RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 000235
(1815 letters)
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 2238 bits (5799), Expect = 0.0
Identities = 1042/1797 (57%), Positives = 1288/1797 (71%), Gaps = 102/1797 (5%)
Query: 4 RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTID 61
+F S + +V VQFGILSP+EIR MSV +IE ET + +P+ GGL DPRLGTID
Sbjct: 5 QFSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTID 64
Query: 62 RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
R+ KC+TC MA+CPGHFGH+ELAKP+FHIGF+ + I+ VC+NC K+ D + KF
Sbjct: 65 RQFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKF 124
Query: 122 KQALKIRNPKNRLKKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNKGGCGAQQPKLTI 180
+ R+PKNRL + + CK K C+ G GGCGA QP +
Sbjct: 125 NDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRK 184
Query: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
+G+++ +K + ++D E K+ L+ V + IS ED LGLN +YAR
Sbjct: 185 DGLRLWGSWKRGKDESDLPE--------KRLLSPLEVHTIFTHISSEDLAHLGLNEQYAR 236
Query: 241 PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
PDWMI+ VLP+PPP VRPS DDLTH+L+ II+ N N+RR E+ GAPAHI+S
Sbjct: 237 PDWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVS 296
Query: 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
E+ QLLQFH+ATY DNE+ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSAR
Sbjct: 297 EYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSAR 356
Query: 351 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
TVIT DP +++D+LGVP SIA LTYPETVTPYNI +L+ELV GP PG AKYIIR
Sbjct: 357 TVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPG---AKYIIR 413
Query: 411 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
D G+R+DLRY K++ D L G++VERH+ DGD V+FNRQPSLHKMS+MGHRI++MPYST
Sbjct: 414 DTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYST 473
Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
FRLNLSVTSPYNADFDGDEMNMHVPQS ETRAE+ E+ MVPK IVSPQSN+PVMGIVQDT
Sbjct: 474 FRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDT 533
Query: 531 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
L G RK + RD F+ ++ MNI++W D+DG +P P ILKP+ LWTGKQ+ +LIIPK IN
Sbjct: 534 LAGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGIN 593
Query: 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
L R + ++ D+ + IE GE++ G + KKT+G S G L+H IW+E GP+
Sbjct: 594 LIRDDDKQSLSNPT-----DSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEIC 648
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
+ F Q +VNYWLL N FSIGIGDTIADA TM+ + T+ +A+ V I+ AQ L
Sbjct: 649 KGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRL 708
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
+PEPG T+ ESFE KV+++LN ARD AG SA+ SL +SNN+K MV AGSKGSFINISQM+
Sbjct: 709 KPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMS 768
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQ VEGKRIPFGF RTLPHF KDD PESRGF+ENSYLRGLTPQEFFFHAM GRE
Sbjct: 769 ACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGRE 828
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKT+ETGYIQRRLVKAMED+MV+YDGTVRN++GD+IQF YGEDG+D+ +E Q
Sbjct: 829 GLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQV 888
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
DSL++ +F+K +R ++ E+ YM +D ++D+ D E +L ADR
Sbjct: 889 FDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIEND----SSVQDLLDEEYTQLVADREL 944
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L I GD+ WPLPVN++R+I NA + F ++ ++P+D+ P +++ +++L +L +
Sbjct: 945 LCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFR 1004
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G D ++ + Q NATL F ILLRS FA KRV+ E+RL + AFEW++GE+E+RF Q++V+PG
Sbjct: 1005 GSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPG 1064
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTPSL+++L
Sbjct: 1065 EMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLM 1124
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
P + + + AKNVQ +E+TTL +VT ATE+ YDPDP T+IEED +FV++++ +PDE++
Sbjct: 1125 PWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEV 1184
Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
K SPWLLR+EL+R M+DKKLSM+ VA KI + F+ DL I+++DNADKLI+R R
Sbjct: 1185 EENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCR 1244
Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------------ 1284
I+ D+ K E +D E+DVFLK IE +ML ++LR
Sbjct: 1245 IIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNITRVYMMEHKIVRQIEDGTF 1304
Query: 1285 -----------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
G+NL M E VDA RT SN +EI+++LGIEA R ALL ELR VI F
Sbjct: 1305 ERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEF 1364
Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
DGSYVNYRHLA+LCD MT RGHLMAITRHGINR +TG +MRCSFEETV+IL+DAA E
Sbjct: 1365 DGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEK 1424
Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSG 1453
D +G++ENIMLGQLAP+GTG +YL+ +ML N + G G T +G
Sbjct: 1425 DDCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGSGMG-TSQLPEGAG 1483
Query: 1454 TPYHDG-MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGY 1512
TPY M+ G++ SP A FSP V G + Y SP
Sbjct: 1484 TPYERSPMVDSGFVGSP-------DAAAFSPLVQGGSEGREGFGDYGLLG-AASPYKGVQ 1535
Query: 1513 SP--TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSP 1570
SP TSP S SPGY TSP YSP+SP Y +SP Y P+SP+YSPTSPSYSPTSPSYSP
Sbjct: 1536 SPGYTSPFSSAMSPGYGLTSPSYSPSSPGY-STSPAYMPSSPSYSPTSPSYSPTSPSYSP 1594
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
TSPSYSPTSPSYS TSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPS
Sbjct: 1595 TSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1654
Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP YSPTSPSYSPTSP+YSPT
Sbjct: 1655 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1714
Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
SP +YSP+SP YSPTSP+YSPTS SYSPTSPSYSP+SP+
Sbjct: 1715 SP-------------SYSPTSPS------YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752
Score = 322 bits (825), Expect = 5e-89
Identities = 157/299 (52%), Positives = 187/299 (62%), Gaps = 32/299 (10%)
Query: 1531 PGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP------ 1584
YS + + + G + +P SP SP + ++SP
Sbjct: 1457 MNYSLGTAVPTLAGSGMGTSQLPEGAGTPY--ERSPMVDSGFVG-SPDAAAFSPLVQGGS 1513
Query: 1585 ----------TSPSYSPTSPSYSP--TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS 1632
+ SP SP TSP S SP Y TSP+YSP+SP Y TSP+Y
Sbjct: 1514 EGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGY-STSPAYM 1572
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
P+SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YS TSP YSPTSPSYSPTSP+YSPTSP
Sbjct: 1573 PSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSP 1632
Query: 1693 SYNPQSAKYSP-SLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
SY+P S YSP S +YSP+SP SP SP YSPTSP+YSPTS SYSPTSPSYSP+SP+YSP
Sbjct: 1633 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1692
Query: 1751 SSPYNAGGGNPDYSPSSPQYSP-SAGYSPSAPGYSPSSTS------QYTPQTNRDDSTT 1802
+SP +P YSP+SP YSP S YSP++P YSP+S S Y+P + T+
Sbjct: 1693 TSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750
Score = 294 bits (753), Expect = 2e-80
Identities = 141/289 (48%), Positives = 165/289 (57%), Gaps = 46/289 (15%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
PT G + + T SP SP + ++SP S +
Sbjct: 1466 PTLAGSGMGTSQLPEGAGTPYERSPMVDS-GFVGSPDAAAFSPLVQGGSEGREGFGDYGL 1524
Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
SP SP Y TSP S SP Y TSP+YSP+SP Y TSP+Y P+SPSYSP
Sbjct: 1525 L-GAASPYKGVQSPGY--TSPFSSAMSPGYGLTSPSYSPSSPGY-STSPAYMPSSPSYSP 1580
Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
TSPSYSPTSPSYSPTSPSYSPTSP+YS TSP YSPTSPSYSPTSP+YSPTSPSY
Sbjct: 1581 TSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSY------ 1634
Query: 1701 YSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGN 1760
SPTSP+YSPTS SYSPTSPSYSP+SP+YSP+SP
Sbjct: 1635 --------------------SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS------ 1668
Query: 1761 PDYSPSSPQYSP-SAGYSPSAPGYSPSS------TSQYTPQTNRDDSTT 1802
YSP+SP YSP S YSP++P YSP+S + Y+P + T+
Sbjct: 1669 --YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1715
Score = 50.5 bits (120), Expect = 6e-06
Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 2/95 (2%)
Query: 1699 AKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
+ + + P L+ + + P + T SP S SP + SP GG
Sbjct: 1453 QDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGG 1512
Query: 1759 GNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
Y SP SP TS ++
Sbjct: 1513 SEGREGFGD--YGLLGAASPYKGVQSPGYTSPFSS 1545
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 2181 bits (5651), Expect = 0.0
Identities = 962/1751 (54%), Positives = 1232/1751 (70%), Gaps = 77/1751 (4%)
Query: 6 PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGET--TERGKPKPGGLSDPRLGTIDRK 63
YS A + V+ VQFG+ SP+E+R +SV +I ET + + K GGL+DPRLG+IDR
Sbjct: 5 QYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
+KC+TC M ECPGHFGH++LAKP+FH+GF+ + + VC +C K+L DE + +Q
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQ 124
Query: 124 ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
AL I++ K R I CK K CE + + ++GGCG QP + +G+
Sbjct: 125 ALAIKDSKKRFAAIWTLCKTKMVCETDVP-----SEDDPTQLVSRGGCGNTQPTIRKDGL 179
Query: 184 KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
K++ +K R D E + L+ E +L + K IS +D LG N ++RP+W
Sbjct: 180 KLVGSWKKDRATGDADE------PELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEW 233
Query: 244 MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
MIL LP+PPPPVRPS DDLT +LA I++ N +L E NGAP H I E
Sbjct: 234 MILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAE 293
Query: 294 QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 294 SLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVI 353
Query: 354 TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
+ DP + +DQ+GVP SIA LTYPE VTPYNI+RL +LV GP+ PG AKY+IRD G
Sbjct: 354 SGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSG 410
Query: 414 QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
R+DLRY K++ D L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRL
Sbjct: 411 DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRL 470
Query: 474 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
NLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L VP IVSPQSN+P MGIVQDTL G
Sbjct: 471 NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCG 530
Query: 534 CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
RK+T RDTFIE D +N+L W D+DG +P P I+KP+PLW+GKQ+ ++ IP I+L R
Sbjct: 531 IRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQR 590
Query: 594 TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
D +L+ D + I G+++ G + KKT+G+S G LIHV+ E GP K
Sbjct: 591 F-----DEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKL 645
Query: 654 LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
G+ Q +VN+WLL N FS GIGDTIAD TM I +TI++AK V ++ K+AQ L +
Sbjct: 646 FGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAK 705
Query: 714 PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
G T+ ESFE+ V + LN ARD+AG A+ +L + NN+K MV AGSKGSFINI+QM+ACV
Sbjct: 706 HGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACV 765
Query: 774 GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
GQQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLI
Sbjct: 766 GQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLI 825
Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
DTAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+ IE Q+LD+
Sbjct: 826 DTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDT 885
Query: 894 LKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT 953
+ + F+K +R ++ + + L E ++ +L+ + D E ++L DR L
Sbjct: 886 IGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFL-R 944
Query: 954 EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
E+ G+++WPLPVN++R+I NAQ+TF +D +PSD+ ++V V LQE L V+ G++
Sbjct: 945 EVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKN 1004
Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
+ AQ++A F LLRS A++RVL+E+RLT++AF+WV+ IE++FL+S+V PGEM+
Sbjct: 1005 EIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMV 1064
Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+PG
Sbjct: 1065 GVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGH 1124
Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
+ +E+AK ++ A+E+TTL+SVT A+E++YDPDP T+I ED E ++ ++ + DE+
Sbjct: 1125 AADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQS 1184
Query: 1194 --KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMN 1251
+ SPWLLR+EL+R M DK L+M V E+I Q F +DL I+++DN +KLI+R R++
Sbjct: 1185 FDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVR 1244
Query: 1252 DEAPKGELNDESAEDDVFLKKIESNMLTEMALR--------------------------- 1284
++ + AE+D LKKIE+ ML + LR
Sbjct: 1245 PKSLD---AETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKE 1301
Query: 1285 --------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
GVNL VM +D R +N I+I+EVLGIEA R AL E+ VI+ DGS
Sbjct: 1302 PEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGS 1361
Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
YVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A AE D
Sbjct: 1362 YVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDC 1421
Query: 1397 RGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPY 1456
RGV+EN++LGQ+APIGTG + +++E L + Q + +E + G S SG
Sbjct: 1422 RGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVN 1481
Query: 1457 HDGMMSPGYLFSPNLR--LSPVTDAQFSPYVG---GMAFSPTSSPGYSPSSPGYSPSSPG 1511
D + +FSP + + F+ Y G G A SP + G +P+SPG+ SSPG
Sbjct: 1482 ADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPG 1541
Query: 1512 YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1571
+SPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSYSPTSPSYSPT
Sbjct: 1542 FSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1601
Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1631
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSP+Y
Sbjct: 1602 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1661
Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSP YSPTSP YSP SP YSP
Sbjct: 1662 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQ 1721
Query: 1692 PSYNPQSAKYS 1702
+ S
Sbjct: 1722 DEQKHNENENS 1732
Score = 330 bits (846), Expect = 1e-91
Identities = 156/269 (57%), Positives = 181/269 (67%), Gaps = 5/269 (1%)
Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
G YS S + S S S + ++ + +
Sbjct: 1465 GQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGA-DYGEATSPF 1523
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
+ +PTSP + +SP +SPTSP YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1524 GAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1583
Query: 1652 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP-SLAYSPS 1710
YSPTSPSYSPTSP+YSPTSP YSPTSPSYSPTSP+YSPTSPSY+P S YSP S +YSP+
Sbjct: 1584 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1643
Query: 1711 SPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ 1769
SP SP SP YSPTSP YSPTS SYSPTSPSYSP+SP+YSP+SP + +P+YSP+SP
Sbjct: 1644 SPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPNYSPTSPS 1702
Query: 1770 YSP-SAGYSPSAPGYSPSSTSQYTPQTNR 1797
YSP S GYSP +P YSP Q +
Sbjct: 1703 YSPTSPGYSPGSPAYSPKQDEQKHNENEN 1731
Score = 259 bits (663), Expect = 8e-70
Identities = 127/266 (47%), Positives = 155/266 (58%), Gaps = 30/266 (11%)
Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
+ G YS S + S S S + ++ +
Sbjct: 1457 QKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGA-D 1515
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
+ + +PTSP + +SP +SPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSP
Sbjct: 1516 YGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSP 1575
Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
SYSPTSP+YSPTSP YSPTSPSYSPTSP+YSPTSPSY
Sbjct: 1576 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----------------------- 1612
Query: 1718 SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP-SAGY 1776
SPTSP+YSPTS SYSPTSPSYSP+SP+YSP+SP +P YSP+SP YSP S Y
Sbjct: 1613 ---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAYSPTSPSY 1668
Query: 1777 SPSAPGYSPSSTSQYTPQTNRDDSTT 1802
SP++P YSP+S Y+P + T+
Sbjct: 1669 SPTSPSYSPTSP-SYSPTSPSYSPTS 1693
Score = 212 bits (541), Expect = 2e-55
Identities = 106/245 (43%), Positives = 129/245 (52%), Gaps = 44/245 (17%)
Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
YS S + S S S + ++ A
Sbjct: 1466 QDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGA-DYGEATSPFG 1524
Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
+ +PTSP + +SP +SPTSP+YSPTSP+YSPTSPSYSPTSP+YSPTSP YSPTSPSY
Sbjct: 1525 AYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1584
Query: 1681 SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS 1740
SPTSP+YSPTSP YSPTSP+YSPTS SYSPTSPS
Sbjct: 1585 SPTSPSYSPTSP--------------------------SYSPTSPSYSPTSPSYSPTSPS 1618
Query: 1741 YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP-SAGYSPSAPGYSPSSTSQYTPQTNRDD 1799
YSP+SP+YSP+SP YSP S YSP++P YSP+S Y+P +
Sbjct: 1619 YSPTSPSYSPTSP---------------SYSPTSPSYSPTSPSYSPTS-PSYSPTSPAYS 1662
Query: 1800 STTKD 1804
T+
Sbjct: 1663 PTSPS 1667
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 1251 bits (3239), Expect = 0.0
Identities = 369/909 (40%), Positives = 521/909 (57%), Gaps = 56/909 (6%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
++ ++FGILSPDEIR+MSV I + E G P G + DPRLG I+ KC TC
Sbjct: 5 NIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGNT 64
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKN 132
+ CPGHFGH+EL +P+ H+GF+K V +++ C C ++ ED+ + + K
Sbjct: 65 LGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKR 124
Query: 133 RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQ 192
+ K + CG +Q K+ +E E +
Sbjct: 125 WPSAARRLTEYVKKTAMK--------------AQVCPHCGEKQFKIKLEKPYNFYEERK- 169
Query: 193 RKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP 252
E LT + L+++ + D ++LG +P +RP+WMIL VLP+P
Sbjct: 170 --------------EGVAKLTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVP 215
Query: 253 PPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
P +RPS DDLTH+L I+R NE L+ GAP II + LLQ+H+AT
Sbjct: 216 PITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVAT 275
Query: 303 YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
YFDNE+PG P + RSGRP++++ RLK KEGR RGNL GKRVDFS+RTVI+PDP I+ID
Sbjct: 276 YFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISID 335
Query: 363 QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
++GVP IA LT PE +TP+NIE+L++ V GP PG Y+IR DG+R+DLRY+K
Sbjct: 336 EVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGA---NYVIRPDGRRIDLRYVK 392
Query: 423 KSSD--HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
+ L GY VERHL DGD VLFNRQPSLH++S+M HR++++ TFRLNL V P
Sbjct: 393 DRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPP 452
Query: 481 YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
YNADFDGDEMN+HVPQS E AE E+M+V K I++P+ P++G QD + G +T +
Sbjct: 453 YNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVK 512
Query: 541 DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW--H 598
T + K+ ++ D + +P IL PR +TGKQV + +PK N A
Sbjct: 513 TTLLTKEEAQQ-ILGVADVKIDLGEPAILAPREYYTGKQVVSAFLPKDFNFHGQANVSSG 571
Query: 599 ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHT 657
K D+ V I+ G LL G KK +G S++H + +E + + + +
Sbjct: 572 PRLCKNEDCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNL 631
Query: 658 QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
+ ++ F++ + D + I + I +AK V NLI++ ++ LEP PGRT
Sbjct: 632 FRVFIRFVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRT 691
Query: 718 MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
+ ES EN + L+ R AG A K L N M G++GS +NI+QM A +GQQ+
Sbjct: 692 LEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQS 751
Query: 778 VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
V G+RI G++ RTLPHF D PE+RGF+ +S+ GL P E FFHA GGREGL+DTAV
Sbjct: 752 VRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAV 811
Query: 838 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
+TS++GY+QRRL+ A+ D+ +YDGTVR+ G+VIQ YG+DG+ ++ K
Sbjct: 812 RTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVIQVAYGDDGVFPMYSA-------HGK 864
Query: 898 KSEFDKAFR 906
+ ++ F
Sbjct: 865 TVDVNRIFE 873
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase
subunit A', DNA-directed...; transcription, fusion
protein, chimera protein, multiprotein; 3.30A
{Pyrococcus furiosus}
Length = 436
Score = 574 bits (1482), Expect = 0.0
Identities = 139/414 (33%), Positives = 206/414 (49%), Gaps = 50/414 (12%)
Query: 1 MDTRFPYSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLG 58
M R + +E K + ++FGILSP EIR+MS V++ +T + G P GG+ D R+G
Sbjct: 54 MVIRPKLNLSEGGKVIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMG 113
Query: 59 TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
ID ++CETC ECPGHFGH+ELA+P+ H+GF KT+ I+ S C C +I +++
Sbjct: 114 VIDPGLRCETCGGRAGECPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEE 173
Query: 119 HK-FKQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQP 176
+ + + ++ RN ++ +I+ K K + CGA Q
Sbjct: 174 IEEYMKKIELARNRRSEFNEIIKEIHKKAKE-----------------RMVCPHCGAPQY 216
Query: 177 KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
+ E + E + + N+ + +L V L++I D+D LLGL+P
Sbjct: 217 PIKFEKPTIYWEIRKDEQGNEYRHRL----------MPTEVRDWLEKIPDKDLPLLGLDP 266
Query: 237 KYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPA 286
+ +RP+WM+L VLP+PP RPS DDLTH+L IIR N L++ GAP
Sbjct: 267 EKSRPEWMVLTVLPVPPVTARPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQ 326
Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
II + LLQ+H+ TY +NE PG P A +SGRP+K++ RLK KEGR RGNL G
Sbjct: 327 LIIEDLWDLLQYHVTTYINNEAPGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGGAGS 386
Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP--HP 398
+ + ++ E N+ + E V G H
Sbjct: 387 GAGSGSVLARA-------AFEITVQHLFEAAEKGEVDNLNGVIENVLIGQKHHH 433
>4ayb_C DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_C
4b1o_C 4b1p_Y 2waq_C 2wb1_C 3hkz_C 2pmz_C
Length = 395
Score = 414 bits (1065), Expect = e-131
Identities = 123/432 (28%), Positives = 198/432 (45%), Gaps = 47/432 (10%)
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
E + + L E K A+ + + KE +TR+ + + +
Sbjct: 2 ENVIDEKDKSYLE-EKVKQASNILPQKIVEDLKNLISNKEVLVTRDEIDKIFDLAIKEYS 60
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
+ L+APGE IG VAAQS+GEP TQMTL TFH+AG+ NVTLG+PRL EI++ K TP
Sbjct: 61 EGLIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTP 120
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
++++L KE+A V LEYT + +V +T +
Sbjct: 121 MMTIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDI-------------------- 160
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
+ + ++L+ EM+ DK +++ V + IN+ + ++ N
Sbjct: 161 ------------ASMSIILQLDNEMLKDKGVTVDDVKKAINRLKLGEFVIDESEGN---- 204
Query: 1244 ILRIRIMNDEAPKGELNDESAEDDVFLKKIES---------NMLTEMALRGVNLLAVMCH 1294
L I N ++ + +K I+ + G NL V+
Sbjct: 205 TLNISFANIDSIAALFKLRDKILNTKIKGIKGIKRAIVQKKGDEYIILTDGSNLSGVLSV 264
Query: 1295 EDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRG 1354
+ VD + +N++ EI EV GIEA R ++ E+ V++ G V+ RH+ ++ D MT G
Sbjct: 265 KGVDIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTG 324
Query: 1355 HLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
+ I RHG+ + R +FE TV LLDAA + + +GV ENI++G +GTG
Sbjct: 325 VVRQIGRHGVTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTG 384
Query: 1415 DCSLYLNDEMLK 1426
L + +L+
Sbjct: 385 MVELTM-RPILR 395
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 215 bits (549), Expect = 2e-56
Identities = 156/684 (22%), Positives = 266/684 (38%), Gaps = 133/684 (19%)
Query: 240 RPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
RP+WMIL+ +P+ PP +RP + DL +I N L++ GAP II
Sbjct: 508 RPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIII 567
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
++LQ + DN G P S RP++S+ L K+GR R NL+GKRVD+S
Sbjct: 568 RNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSG 627
Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
R+VI P + + Q G+P +AL L P LK++ E G P K + +
Sbjct: 628 RSVIVVGPQLKLHQCGLPKRMALELFKPFL--------LKKMEEKG-IAPNVKAARRMLE 678
Query: 410 RDDGQRLDL-RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM--------G 460
R + ++ L++ + VL NR P+LH++ I G
Sbjct: 679 RQRDIKDEVWDALEEVIHGKV---------------VLLNRAPTLHRLGIQAFQPVLVEG 723
Query: 461 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
I++ P V +NADFDGD+M +HVP S +AE M+ ++SP S
Sbjct: 724 QSIQLHPL--------VCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASG 775
Query: 521 RPVMGIVQDTLLGCRKIT--KRDTFIEKDVFMN--------------------ILMWWED 558
P+ +D +LG IT +++ F +
Sbjct: 776 EPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETS 835
Query: 559 FDGKVPQPTILKPRPLWT--GKQVFNLIIPKQIN--LFRTAAWHADNDKGILTAGDTLVR 614
L G ++ + T+ + + A +
Sbjct: 836 VGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKV 895
Query: 615 IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGI 674
+ L K +L L++ + +G + + L ++ + + +IGI
Sbjct: 896 AWELIQLDVPQEKNSL----KDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGI 951
Query: 675 GD-TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
D I + K + +A + + + + L T E + +++ Q+
Sbjct: 952 DDAVIPEEK-----KQYLEEADRKLLQIEQAYEMGFL------TDRERY-DQILQLWTET 999
Query: 734 RDEAGSSAQKSLSES---NNLKAMVTAGSKGSFINISQ-------MTACVGQQNVEGKRI 783
++ + K+ E+ N L M +G++G+ I Q M G+
Sbjct: 1000 TEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQ------KPSGETF 1053
Query: 784 PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
+P V +S+ GLT E+F + G R+G DTA++T+++G
Sbjct: 1054 E-------VP--------------VRSSFREGLTVLEYFISSHGARKGGADTALRTADSG 1092
Query: 844 YIQRRLVKAMEDIMVKYD--GTVR 865
Y+ R+LV +I+V+ GT
Sbjct: 1093 YLTRKLVDVTHEIVVREADCGTTN 1116
Score = 67.5 bits (165), Expect = 5e-11
Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV-SAKNVTLGVPRLREIINV 1116
V+ GE +G VAAQSIGEP TQ+T+ TFH GV A ++T G+PR+ E+
Sbjct: 1214 PVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEA 1265
Score = 52.5 bits (126), Expect = 1e-06
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 42/146 (28%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM------------------ 1350
+++E G EAV R L++E++ V G ++ +H+ I+ M
Sbjct: 1334 QLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQ 1393
Query: 1351 ----------------------TYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
++ LM +T+ ++ + SF+ T +L +AA
Sbjct: 1394 VLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTK--SWLSAASFQNTTHVLTEAA 1451
Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTG 1414
+ + D L G+ EN++LG+L P GTG
Sbjct: 1452 IAGKKDELIGLKENVILGRLIPAGTG 1477
Score = 52.1 bits (125), Expect = 2e-06
Identities = 46/266 (17%), Positives = 86/266 (32%), Gaps = 49/266 (18%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRL-GTID---------RKMK 65
V+ + SP++IR S ++E ET KP+ GL D R+ G I ++ +
Sbjct: 8 VRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQR 67
Query: 66 -----CETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADED 117
CE C + + GH+ELA P HI F+K V S + +L
Sbjct: 68 FEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKI-------GTLL---- 116
Query: 118 DHKFKQALKI--------RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG 169
D + ++ +PK + + K + + +E + +
Sbjct: 117 DLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTD--EEYR---ELRYGKQETYPL 171
Query: 170 GCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDC 229
G E + E D L R+ + + R+
Sbjct: 172 PPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYR-FPRRVRVEYVKKERAGLRLPLAA- 229
Query: 230 QLLGLNPKYARPDWMILQVLPIPPPP 255
+ + +P ++ ++
Sbjct: 230 ---WVEKEAYKPGEILAELPEPYLFR 252
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 206 bits (526), Expect = 1e-53
Identities = 155/699 (22%), Positives = 261/699 (37%), Gaps = 162/699 (23%)
Query: 240 RPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
RP+WMIL+ +P+ PP +RP + DL +I N L++ GAP II
Sbjct: 248 RPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIII 307
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
++LQ + DN G P S RP++S+ L K+GR R NL+GKRVD+S
Sbjct: 308 RNEKRMLQEAVDAVIDNGRRGSPVTNPGSERPLRSLTDILSGKQGRFRQNLLGKRVDYSG 367
Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
R+VI P + + Q G+P +AL L P LK++ E P K + +
Sbjct: 368 RSVIVVGPQLKLHQCGLPKRMALELFKPFL--------LKKMEEKA-FAPNVKAARRMLE 418
Query: 410 RDDGQRLDL-RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM--------G 460
R + ++ L++ + VL NR P+LH++ I G
Sbjct: 419 RQRDIKDEVWDALEEVIHGKV---------------VLLNRAPTLHRLGIQAFQPVLVEG 463
Query: 461 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
I++ P V +NADFDGD+M +HVP S +AE M+ ++SP S
Sbjct: 464 QSIQLHPL--------VCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASG 515
Query: 521 RPVMGIVQDTLLGCRKIT--KRDTFIEKDVFMN--------------------ILMWWED 558
P+ +D +LG IT +++ F +
Sbjct: 516 EPLAKPSRDIILGLYYITQVRKEKKGAGMAFATPEEALAAYERGEVALNAPIVVAGRETS 575
Query: 559 FDGKVPQPTILKPRPLWT--GKQVFNLIIPKQINLFRTAAW--HADNDKGILTAGDTLVR 614
L G + + R + + A
Sbjct: 576 VGRLKFVFANPDEALLAVAHGLLDLQDTVTTRYLGRRLETNPGRILFARIVGEAVGDEKV 635
Query: 615 IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL--------------GHTQWL 660
++ + K +L L++ + +G + + L G
Sbjct: 636 AQELIQMDVPQEKNSL----KDLVYQAFLRLGMEKTARLLDALKYYGFTLSTTSG----- 686
Query: 661 VNYWLLQNAFSIGIGD-TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR-TM 718
+IGI D I + K + +A ++ + + + G T
Sbjct: 687 --------IITIGIDDAVIPEEKQ-----RYLEEADRKLRQIEQAYEM-------GFLTD 726
Query: 719 MESFENKVNQVLNTARDEAGSSAQKSLSES---NNLKAMVTAGSKGSFINISQ------- 768
E + ++V Q+ ++ + + E+ N L M +G++G+ I Q
Sbjct: 727 RERY-DQVIQLWTETTEKVTQAVFNNFEENYPFNPLYVMAQSGARGNPQQIRQLCGMRGL 785
Query: 769 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
M G+ +P V +S+ GLT E+F + G
Sbjct: 786 MQ------KPSGETFE-------VP--------------VRSSFREGLTVLEYFISSHGA 818
Query: 829 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 865
R+G DTA++T+++GY+ R+LV +I+V+ GT +
Sbjct: 819 RKGGADTALRTADSGYLTRKLVDVAHEIVVREADCGTTK 857
Score = 68.1 bits (167), Expect = 3e-11
Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV-SAKNVTLGVPRLREI 1113
V+ GE +G VAA+SIGEP TQ+T+ TFH GV ++T G+PR+ E+
Sbjct: 955 PVSIGEAVGVVAAESIGEPGTQLTMRTFHTGGVAVGTDITQGLPRVIEL 1003
Score = 52.7 bits (127), Expect = 1e-06
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 42/146 (28%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM------------------ 1350
+++E G EAV R L+DE++ V G ++ +H+ I+ M
Sbjct: 1075 QLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDKHIEIVVRQMLKYVEVTDPGDSPLLEGQ 1134
Query: 1351 ----------------------TYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
++ LM +T+ ++ + SF+ T +L +AA
Sbjct: 1135 VLEKWDVEALNERLIAEGKVPVAWKPLLMGVTKSALSTKSW--LSAASFQNTTHVLTEAA 1192
Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTG 1414
+ + D L G+ EN++LG+L P GTG
Sbjct: 1193 IAGKKDELIGLKENVILGRLIPAGTG 1218
Score = 42.7 bits (101), Expect = 0.001
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRL-GTID---------RKMK 65
V+ + SP++IR S ++E ET KP+ GL D R+ G I ++ +
Sbjct: 8 VRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQR 67
Query: 66 -----CETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLSIM 102
CE C + GH+ELA P HI F+K V S +
Sbjct: 68 FEGKVCERCGVEVTRSIVRRYRMGHIELATPAAHIWFVKDVPSKI 112
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 197 bits (502), Expect = 1e-50
Identities = 179/700 (25%), Positives = 282/700 (40%), Gaps = 188/700 (26%)
Query: 240 RPDWMILQVLPIPPPPVRP-----------SD--DLTHQLAMIIRHNENLRRQERNGAPA 286
+P+WMIL VLP+ PP +RP SD DL ++ I R+N L+R AP
Sbjct: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV--INRNNR-LKRLLDLAAPD 289
Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
I+ ++LQ + DN G+ T + RP+KS+ +K K+GR R NL+GKRVD
Sbjct: 290 IIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 348
Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
+S R+VIT P + + Q G+P +AL L P +L G K K
Sbjct: 349 YSGRSVITVGPYLRLHQCGLPKKMALELFKPFI--------YGKLELRG-LATTIKAAKK 399
Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM------- 459
+ R++ D+ L + H VL NR P+LH++ I
Sbjct: 400 MVEREEAVVWDI------------LDEVIREHP-----VLLNRAPTLHRLGIQAFEPVLI 442
Query: 460 -GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 518
G I++ P L V + YNADFDGD+M +HVP + E + E LMM I+SP
Sbjct: 443 EGKAIQLHP-----L---VCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494
Query: 519 SNRPVMGIV--QDTLLGCRKIT--KRDTFIEKDVFMN----------------------I 552
+ P+ IV QD +LG +T + E V I
Sbjct: 495 NGEPI--IVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRI 552
Query: 553 LMWWEDFDGKVPQPTILKPRPLWT--GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGD 610
+ +D +G++ T L T G+ + +I+PK + +
Sbjct: 553 TEYEKDANGELVAKTSL----KDTTVGRAILWMIVPKGLP-Y------------------ 589
Query: 611 TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
+++ L KK + +++ + +G F + + ++
Sbjct: 590 --------SIVNQALGKKAI----SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637
Query: 671 SIGIGD-TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
S+GI D I + K ++ IS+A+ V + +Q Q + T E + NKV +
Sbjct: 638 SVGIDDMVIPEKK-----HEIISEAEAEVAEIQEQFQSGLV------TAGERY-NKVIDI 685
Query: 730 LNTARDEAGSSAQKSLSES---------------NNLKAMVTAGSKGSFINISQ------ 768
A D + +L N++ M +G++GS I Q
Sbjct: 686 WAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG 745
Query: 769 -MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
M +G I P + ++ GL ++F G
Sbjct: 746 LMA------KPDGSIIE-------TP--------------ITANFREGLNVLQYFISTHG 778
Query: 828 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 865
R+GL DTA+KT+ +GY+ RRLV +D++V D GT
Sbjct: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHE 818
Score = 66.1 bits (162), Expect = 1e-10
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
++ GE IG +AAQSIGEP TQ+T+ TFH G +++ +++
Sbjct: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954
Score = 51.5 bits (124), Expect = 3e-06
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 44/147 (29%)
Query: 1309 EIIEVLGIEAVRRALLDE---------------------------LRVVISFD-----GS 1336
+I+ + G+ AV R +++E +V + G
Sbjct: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278
Query: 1337 YVNYRHLAILCDTM--------TYRGHLMAITRHGINRNDTGPMMRC-SFEETVDILLDA 1387
V Y + I + TY L+ IT+ + T + SF+ET +L +A
Sbjct: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA---TESFISAASFQETTRVLTEA 1335
Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTG 1414
AV + D LRG+ EN+++G+L P GTG
Sbjct: 1336 AVAGKRDELRGLKENVIVGRLIPAGTG 1362
Score = 42.6 bits (101), Expect = 0.001
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 34/112 (30%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETTE-RG-KPKPGGLSDPRL-GTID---------RKMK 65
++ + SPD IR S +++ ET R KP+ GL R+ G + +++K
Sbjct: 20 IKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLK 79
Query: 66 -----CETC----TAN------MAECPGHFGHLELAKPMFHIGFMKTVLSIM 102
CE C T M GH+ELA P HI F+K++ S +
Sbjct: 80 HRGVICEKCGVEVTQTKVRRERM-------GHIELASPTAHIWFLKSLPSRI 124
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 102 bits (255), Expect = 7e-22
Identities = 97/662 (14%), Positives = 188/662 (28%), Gaps = 191/662 (28%)
Query: 907 FEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLP 966
FE E + +L + D + +DV D L + I S D
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIMSKD-----A 60
Query: 967 VN-LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK----LQERLKVVPGEDPLSVEAQK 1021
V+ RL W T + +M V E + L +K P
Sbjct: 61 VSGTLRLFW----TLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQP------S 106
Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE------MIGC 1075
T + + +V ++ ++R + + L L P + ++G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL----RQALLEL-RPAKNVLIDGVLGS 161
Query: 1076 ----VAAQ------------------SIGEPAT-----QMTLNTFHYAGVSAKNVTLGVP 1108
VA ++ + +M + + + +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 1109 RLREIINVAKKIKTPSLSVFL--KPGVNS--------TKE--RAKNVQCALEYTT-LRSV 1155
++ I+ + L L KP N + A N+ C + TT + V
Sbjct: 222 NIKLRIHSIQA----ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 1156 TEA------TEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE--KISPWL-------L 1200
T+ T + D M +E + Y + +D+ E +P +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 1201 RIELNR-----EMMVDK-----KLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
R L + DK + S+ + ++ D L+ +F I
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPS--------AHI- 387
Query: 1251 NDEAPKGELN---DESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHL 1307
P L+ + + DV + ++ ++ + + T S
Sbjct: 388 ----PTILLSLIWFDVIKSDVMV------VVNKLHKYS------LVEKQPK-ESTISIPS 430
Query: 1308 IEI---IEVLGIEAVRRALLDELRVVISFDG---------SYVNYRHLAILCDTMTYRGH 1355
I + +++ A+ R+++D + +FD Y Y H+ + H
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIG-------H--H 480
Query: 1356 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGD 1415
L I + LD R + + I A +G
Sbjct: 481 LKNIEHPE------------RMTLFRMVFLD---------FRFLEQKIRHDSTAWNASGS 519
Query: 1416 CSLYLND-EMLKNAIELQLPSYMEGL----EFGMTPARSPVSGTPYHD----GMMSP-GY 1465
L + K I P Y + +F + + + Y D +M+
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC-SKYTDLLRIALMAEDEA 578
Query: 1466 LF 1467
+F
Sbjct: 579 IF 580
Score = 72.2 bits (176), Expect = 1e-12
Identities = 72/541 (13%), Positives = 154/541 (28%), Gaps = 160/541 (29%)
Query: 481 YNADFDGDEMNMH----VP---QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ--DTL 531
++ DF+ E + +F + ++ +PK I+S + I+ D +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS---KEEIDHIIMSKDAV 61
Query: 532 LGCRKITKRDTFIEK-----DVFMNILM-----W-WEDFDGKVPQPTILKPR------PL 574
G ++ T + K F+ ++ + + QP+++ L
Sbjct: 62 SGTLRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 575 WTGKQVF---NLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLG 631
+ QVF N+ + R A K +L G G SG K +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV------LG---SG---KTWVA 167
Query: 632 TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL--------------LQNAFSIGIGDT 677
V K +WL LQ +
Sbjct: 168 LDVCLSYKVQ---------CKMDFKI-----FWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 678 IADAKTMETINDTISKAKNNVKNLIKQAQ-DKSL-------EPEPGRTMMESFENKVNQV 729
+ + I I + ++ L+K + L + +F ++
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK----AWNAFNLSC-KI 268
Query: 730 LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
L T R K +++ L A T I +D
Sbjct: 269 LLTTRF-------KQVTDF--LSAATT------------------------THIS---LD 292
Query: 790 RTLPHFTKDDYGPESRGFVENSYLRGLTPQEF---------FFHAMGGREGLIDTAVKTS 840
T D E + + YL PQ+ ++ I + T
Sbjct: 293 HHSMTLTPD----EVKSLLLK-YL-DCRPQDLPREVLTTNPRRLSIIAE--SIRDGLATW 344
Query: 841 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM--DSVWIESQTLDSL--KM 896
+ + + I+ + ++ + ++ + S I + L + +
Sbjct: 345 D--NWKHVNCDKLTTII---ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 897 KKSE----FDKAFRFEMDEENWNPNYMLQEYIDDL--KTIKELRDVFDAEVQKLEADRYQ 950
KS+ +K ++ + E+ + + I + + +L + + + + D Y
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTI---SIPSIYLELKVKLEN--EYALHRSIVDHYN 454
Query: 951 L 951
+
Sbjct: 455 I 455
Score = 71.4 bits (174), Expect = 3e-12
Identities = 95/675 (14%), Positives = 182/675 (26%), Gaps = 215/675 (31%)
Query: 306 NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF--SARTVITPDPTINIDQ 363
+ + A + R ++ S+ + + ++ F S P++
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 364 LGVPWSIALNLTY--PETVTPYNIERLKE-------LVEYGPHPP--------PGKTG-A 405
+ + Y + YN+ RL+ L+E P GKT A
Sbjct: 112 ----YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 406 KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
+ YKV+ ++ F L +L + +++
Sbjct: 168 LDVCLS---------------------YKVQCKMDFKIFWL-----NLKNCNSPETVLEM 201
Query: 466 MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE-TRAEVLELMMV---PKCIVSPQSNR 521
+ +L + + + D ++ +AE+ L+ C+
Sbjct: 202 LQ----KLLYQIDPNWTSRSDHSS---NIKLRIHSIQAELRRLLKSKPYENCL------- 247
Query: 522 PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW----WEDFDGKVPQPTILKPRPLWTG 577
+V +V W F+ +L R
Sbjct: 248 ----LVLL-----------------NV------QNAKAWNAFNLSC--KILLTTR----F 274
Query: 578 KQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSL 637
KQV + + D+ LT + LL K L L
Sbjct: 275 KQVTDFLSAATTTHISL-----DHHSMTLTPDEVK------SLLL-----KYLDCRPQDL 318
Query: 638 -----------IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMET 686
+ +I E + A W + W N +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLAT-------W--DNWKHVNC---------------DK 354
Query: 687 INDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES---FENKVN---QVL---------N 731
+ I + N LEP R M + F + +L +
Sbjct: 355 LTTIIESSLNV------------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 732 TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN--------VEGKRI 783
+ SL E ++ ++ I + V +N V+ I
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTIS-------IPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 784 PFGFVDRTLPHFTKDDYGPESRGF----VENSYLRGLTPQEFF-FHAMGGREGLIDTAVK 838
P F L D Y G +E+ L F F + + + +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTA 513
Query: 839 TSETGYIQRRL--VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK- 895
+ +G I L +K + + D + ++ FL ++ I S+ D L+
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP---KIEENLICSKYTDLLRI 570
Query: 896 --MKKSE--FDKAFR 906
M + E F++A +
Sbjct: 571 ALMAEDEAIFEEAHK 585
Score = 61.0 bits (147), Expect = 4e-09
Identities = 78/526 (14%), Positives = 152/526 (28%), Gaps = 164/526 (31%)
Query: 96 KTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKK------------ILDACKN 143
+TVL +++ + + DH L+I + + L++ +L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---- 251
Query: 144 KTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLP 203
+V Q+ + C K++
Sbjct: 252 ----------NV--QNAKA-WNAFNLSC------------KILL---------------- 270
Query: 204 EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSDDLT 263
R + +T IS + + L P + ++L+ L P
Sbjct: 271 --TTRFKQVTDFLSAATTTHISLDH-HSMTLTPDEVKS--LLLKYLDCRP---------- 315
Query: 264 HQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT--YFDNELPGQPRATQRSGRP 321
++L R+ P +S A+ ++ +AT + + +
Sbjct: 316 ----------QDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVN------CDKLTTI 358
Query: 322 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381
I+S + L+ E R F +V P I L + W
Sbjct: 359 IESSLNVLEPAEYRKM---------FDRLSVFPPSAHIPTILLSLIWF------DVIKSD 403
Query: 382 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441
+ + +L +Y ++ + Q + S + L KV+
Sbjct: 404 VMVV--VNKLHKYS------------LV--EKQPKESTI----SIPSIYLELKVKL---- 439
Query: 442 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM-NMHVPQSFET 500
+ +LH+ SI+ H + + L Y G + N+ P+
Sbjct: 440 ------ENEYALHR-SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 501 -RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRK----ITKRDTFIEKDVFMNILMW 555
R L+ + + I + G + +TL + I D E+ +N ++
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER--LVNAIL- 549
Query: 556 WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN 601
DF +P+ NLI K +L R A D
Sbjct: 550 --DF---LPKIEE-------------NLICSKYTDLLRIALMAEDE 577
Score = 36.8 bits (84), Expect = 0.087
Identities = 49/354 (13%), Positives = 92/354 (25%), Gaps = 124/354 (35%)
Query: 22 ILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCT----------A 71
LS +S+ T + K L L + + E T
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVK----SLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK--------FKQ 123
++ + + + + H+ K L+ + N L + +++ F
Sbjct: 336 SIRDGLATWDNWK------HVNCDK--LTTIIESSLNV---L-EPAEYRKMFDRLSVFPP 383
Query: 124 ALKIRNPKNRLK------------KILDACKNKTKCEGGDE---IDVPGQDGEEPLKKNK 168
+ I P L +++ + E + I +P E
Sbjct: 384 SAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL------ 435
Query: 169 GGCGAQQPKLTIEGM-----KMIAEYKAQRKKNDDQEQLPEPVER-----------KQTL 212
K+ +E ++ Y + D + L P K
Sbjct: 436 --------KVKLENEYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 213 TAERV---------LGVLK---RISDEDCQLLG--LN-----PKYARPDWMILQVLPIPP 253
ER+ L+ R G LN Y + P
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP------YICDNDP 539
Query: 254 PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
R + + + + ENL I S++ LL+ IA ++E
Sbjct: 540 KYERLVNAILD---FLPKIEENL-----------ICSKYTDLLR--IALMAEDE 577
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 73.2 bits (179), Expect = 3e-13
Identities = 24/140 (17%), Positives = 37/140 (26%), Gaps = 2/140 (1%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
+ S + + S + +P+ + P +SP S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTL 59
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
SP + P S SP P + + + SP S S P
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119
Query: 1670 SPGYSPTSPSYSPTSPTYSP 1689
P PS + S T
Sbjct: 120 GVLKVPAHPSGNMASFTKHI 139
Score = 72.4 bits (177), Expect = 5e-13
Identities = 21/140 (15%), Positives = 38/140 (27%), Gaps = 2/140 (1%)
Query: 1557 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
+ S + + S + +P+ + P +SP S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTL 59
Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
SP + P S SP P + + + SP S + P
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119
Query: 1677 SPSYSPTSPTYSPTSPSYNP 1696
P P+ + S + +
Sbjct: 120 GVLKVPAHPSGNMASFTKHI 139
Score = 72.1 bits (176), Expect = 8e-13
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 6/136 (4%)
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPT-SPSYSPTSPAYSPTSPGYSPTSP 1678
+ T + S TSP+ S +PS P+ P +SP S SP +
Sbjct: 6 HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65
Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL-SPASPYSPTSPNYSPTSSSYSPT 1737
P S SP P +P+L +S SP+L SP +P S + P +
Sbjct: 66 MGPPFSVISSPMGPHSMSVP--TTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123
Query: 1738 SPSYSPSSPTYSPSSP 1753
P++ +
Sbjct: 124 VPAHPSGNMASFTKHI 139
Score = 71.7 bits (175), Expect = 1e-12
Identities = 22/140 (15%), Positives = 35/140 (25%), Gaps = 2/140 (1%)
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
+ S + + S + +P+ + P +SP S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTL 59
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
SP + P S SP P + + + SP + P
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119
Query: 1684 SPTYSPTSPSYNPQSAKYSP 1703
P PS N S
Sbjct: 120 GVLKVPAHPSGNMASFTKHI 139
Score = 71.7 bits (175), Expect = 1e-12
Identities = 28/132 (21%), Positives = 39/132 (29%), Gaps = 3/132 (2%)
Query: 1547 YSPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSY 1603
+ T + S TSP+ S +PS P+ P +SP S SP +
Sbjct: 8 HVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMG 67
Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
P S SP P + + SP S S P P
Sbjct: 68 PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAH 127
Query: 1664 PAYSPTSPGYSP 1675
P+ + S
Sbjct: 128 PSGNMASFTKHI 139
Score = 70.9 bits (173), Expect = 2e-12
Identities = 27/132 (20%), Positives = 37/132 (28%), Gaps = 3/132 (2%)
Query: 1533 YSPTSPTYSPSSPGYSPTSP--AYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSY 1589
+ + S TSP S +PS P+ P +SP S SP +
Sbjct: 8 HVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMG 67
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
P S SP P + SP + S P P
Sbjct: 68 PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAH 127
Query: 1650 PSYSPTSPSYSP 1661
PS + S +
Sbjct: 128 PSGNMASFTKHI 139
Score = 70.9 bits (173), Expect = 2e-12
Identities = 25/136 (18%), Positives = 35/136 (25%)
Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT 1564
+ S SPT G + PG +SP S SP
Sbjct: 4 HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPI 63
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
+ P S SP P + + + SP S + P
Sbjct: 64 NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123
Query: 1625 SPTSPSYSPTSPSYSP 1640
P PS + S +
Sbjct: 124 VPAHPSGNMASFTKHI 139
Score = 70.9 bits (173), Expect = 2e-12
Identities = 29/127 (22%), Positives = 37/127 (29%), Gaps = 3/127 (2%)
Query: 1540 YSPSSPGYSPTSPAYSPTSPS--YSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSY 1596
+ T S TSP+ S +PS P+ P +SP S SP +
Sbjct: 8 HVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMG 67
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
P S SP P + SP S S P P
Sbjct: 68 PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAH 127
Query: 1657 PSYSPTS 1663
PS + S
Sbjct: 128 PSGNMAS 134
Score = 70.5 bits (172), Expect = 2e-12
Identities = 25/125 (20%), Positives = 35/125 (28%), Gaps = 2/125 (1%)
Query: 1492 PTSSPGYSPS--SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
+S S SP+ G + PG +SP S SP + P
Sbjct: 10 DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPP 69
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
S SP P + + + SP S S P P P+
Sbjct: 70 FSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPS 129
Query: 1610 YSPTS 1614
+ S
Sbjct: 130 GNMAS 134
Score = 70.1 bits (171), Expect = 3e-12
Identities = 24/136 (17%), Positives = 34/136 (25%)
Query: 1498 YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 1557
+ S SPT G + P +SP S SP
Sbjct: 4 HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPI 63
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1617
+ P S SP P + + + SP S S P
Sbjct: 64 NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123
Query: 1618 SPTSPAYSPTSPSYSP 1633
P P+ + S +
Sbjct: 124 VPAHPSGNMASFTKHI 139
Score = 70.1 bits (171), Expect = 3e-12
Identities = 29/131 (22%), Positives = 37/131 (28%), Gaps = 1/131 (0%)
Query: 1475 PVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYS 1534
D FS V SPT + S + PG +SP S SP +
Sbjct: 10 DDDDKMFSTQVNSSLTSPTGRGSMAAPSL-HPSLGPGIGSPGQLHSPISTLSSPINGMGP 68
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
P S SP P + + SP S S P P P
Sbjct: 69 PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP 128
Query: 1595 SYSPTSPSYSP 1605
S + S +
Sbjct: 129 SGNMASFTKHI 139
Score = 70.1 bits (171), Expect = 3e-12
Identities = 26/136 (19%), Positives = 36/136 (26%), Gaps = 4/136 (2%)
Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
+ T S TSPT S S + P +SP S SP
Sbjct: 8 HVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL----HPSLGPGIGSPGQLHSPISTLSSPI 63
Query: 1579 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1638
+ P S SP P + + SP + + P
Sbjct: 64 NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123
Query: 1639 SPTSPSYSPTSPSYSP 1654
P PS + S +
Sbjct: 124 VPAHPSGNMASFTKHI 139
Score = 69.7 bits (170), Expect = 3e-12
Identities = 30/138 (21%), Positives = 44/138 (31%), Gaps = 8/138 (5%)
Query: 1512 YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1571
+ T S TSP + +PS + P +SP S SP
Sbjct: 8 HVDDDDKMFSTQVNSSLTSP--TGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTLSSPI 63
Query: 1572 SPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP 1629
+ P S SP P PT+P+ ++ S +SP +S P
Sbjct: 64 NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSS--EDIKPPLGLNGV 121
Query: 1630 SYSPTSPSYSPTSPSYSP 1647
P PS + S +
Sbjct: 122 LKVPAHPSGNMASFTKHI 139
Score = 69.4 bits (169), Expect = 5e-12
Identities = 26/129 (20%), Positives = 38/129 (29%), Gaps = 1/129 (0%)
Query: 1480 QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT-SPGYSPTSPGYSPTSPGYSPTSP 1538
FS + + + S ++P P+ PG +SP S SP +
Sbjct: 6 HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65
Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
P S SP P + + + SP S S P P
Sbjct: 66 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP 125
Query: 1599 TSPSYSPTS 1607
PS + S
Sbjct: 126 AHPSGNMAS 134
Score = 69.0 bits (168), Expect = 6e-12
Identities = 25/143 (17%), Positives = 36/143 (25%), Gaps = 5/143 (3%)
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
+ + S SPT + P +SP S S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61
Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPY 1720
P + P S SP P PT+P+ + S +P S P
Sbjct: 62 PINGMGPPFSVISSPMGPHSMS-----VPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPL 116
Query: 1721 SPTSPNYSPTSSSYSPTSPSYSP 1743
P S + S +
Sbjct: 117 GLNGVLKVPAHPSGNMASFTKHI 139
Score = 69.0 bits (168), Expect = 8e-12
Identities = 26/139 (18%), Positives = 43/139 (30%), Gaps = 3/139 (2%)
Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
+ S + + S + +P+ + PG +SP S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTL 59
Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
SP + P S SP +S S P +P +S SP S + S + P
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSVP-TTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118
Query: 1747 TYSPSSPYNAGGGNPDYSP 1765
P + G ++
Sbjct: 119 NGVLKVPAHPSGNMASFTK 137
Score = 67.8 bits (165), Expect = 1e-11
Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 6/144 (4%)
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
+ S + + S + +P+ + P +SP S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTL 59
Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
SP + P S SP P S + P+ + +S SP S S + P
Sbjct: 60 SSPINGMGPPFSVISSPMGPH-SMSVPTTP--TLGFSTGSPQLSSPMNPVSSSEDIKPPL 116
Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRL 1714
+ PS + + +
Sbjct: 117 GLN-GVLKVPAHPSGNMASFTKHI 139
Score = 67.8 bits (165), Expect = 2e-11
Identities = 26/143 (18%), Positives = 38/143 (26%), Gaps = 5/143 (3%)
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
+ + S SPT + P +SP S S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61
Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
P + P S SP P PT+PT ++ S S S + P
Sbjct: 62 PINGMGPPFSVISSPMGP-----HSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPL 116
Query: 1714 LSPASPYSPTSPNYSPTSSSYSP 1736
P P+ + S +
Sbjct: 117 GLNGVLKVPAHPSGNMASFTKHI 139
Score = 67.4 bits (164), Expect = 2e-11
Identities = 28/139 (20%), Positives = 43/139 (30%), Gaps = 6/139 (4%)
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
+ T + S TSP + +P+ + P +SP S S
Sbjct: 6 HHHVDDDDKMFSTQVNSSLTSP--TGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTLSS 61
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
P + P S SP P S +PT + + SP +P + + K L
Sbjct: 62 PINGMGPPFSVISSPMGP--HSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119
Query: 1707 YSPSSPRLSPASPYSPTSP 1725
P + S T
Sbjct: 120 GVLKVPAHPSGNMASFTKH 138
Score = 65.9 bits (160), Expect = 7e-11
Identities = 23/134 (17%), Positives = 36/134 (26%), Gaps = 1/134 (0%)
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS 1702
+ S S SPT G + P ++P S S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61
Query: 1703 PSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP-YNAGGGNP 1761
P P +S S +PT + + SP +P S G
Sbjct: 62 PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121
Query: 1762 DYSPSSPQYSPSAG 1775
P+ P + ++
Sbjct: 122 LKVPAHPSGNMASF 135
Score = 65.9 bits (160), Expect = 7e-11
Identities = 27/138 (19%), Positives = 39/138 (28%), Gaps = 3/138 (2%)
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN 1695
+ S S SPT + P +SP S +
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61
Query: 1696 PQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
P + P +S S + P S PT+P ++ S +SP SS
Sbjct: 62 PINGMGPP---FSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118
Query: 1756 AGGGNPDYSPSSPQYSPS 1773
G PS S +
Sbjct: 119 NGVLKVPAHPSGNMASFT 136
Score = 65.5 bits (159), Expect = 9e-11
Identities = 36/146 (24%), Positives = 45/146 (30%), Gaps = 9/146 (6%)
Query: 1673 YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
+ T S TSP+ + + +PSL S SP +SP S SP +
Sbjct: 8 HVDDDDKMFSTQVNSSLTSPT--GRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65
Query: 1733 SYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYT 1792
P S SP P S S P G SP SP S S P +
Sbjct: 66 MGPPFSVISSPMGPH-SMSVPTTPTLGFSTGSP--QLSSPMNPVSSSEDIKPPLGLNGVL 122
Query: 1793 PQTNRDDSTTKDDKNTK----GDKSS 1814
GD+SS
Sbjct: 123 KVPAHPSGNMASFTKHICAICGDRSS 148
Score = 62.8 bits (152), Expect = 5e-10
Identities = 27/131 (20%), Positives = 37/131 (28%), Gaps = 3/131 (2%)
Query: 1468 SPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYS 1527
+ + V + SP G +P+ P PG +SP S SP +
Sbjct: 12 DDKMFSTQVNSSLTSPTGRGSMAAPSLHP---SLGPGIGSPGQLHSPISTLSSPINGMGP 68
Query: 1528 PTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
P S SP P + SP S S P P P
Sbjct: 69 PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP 128
Query: 1588 SYSPTSPSYSP 1598
S + S +
Sbjct: 129 SGNMASFTKHI 139
Score = 61.7 bits (149), Expect = 1e-09
Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 10/138 (7%)
Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSP----SSP 1712
+ T S TSP+ +P+ SP +SP SSP
Sbjct: 6 HHHVDDDDKMFSTQVNSSLTSPT--GRGSMAAPSLHPSLGPGI-GSPGQLHSPISTLSSP 62
Query: 1713 RLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
P+S S P S S PT+P+ S+ + SSP N + D P P
Sbjct: 63 INGMGPPFSVISSPMGPHSMS-VPTTPTLGFSTGSPQLSSPMNPVSSSEDIKP--PLGLN 119
Query: 1773 SAGYSPSAPGYSPSSTSQ 1790
P+ P + +S ++
Sbjct: 120 GVLKVPAHPSGNMASFTK 137
Score = 52.8 bits (126), Expect = 7e-07
Identities = 32/150 (21%), Positives = 46/150 (30%), Gaps = 13/150 (8%)
Query: 1437 MEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
M + T + + SP S +P P +G SP
Sbjct: 1 MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSM---AAPS----LHPSLGPGIGSP--GQ 51
Query: 1497 GYSPSSPGYSPSSPGYSPTSPGYSPTSPG--YSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
+SP S SP + P S SP P PT+P ++ + SSP +S
Sbjct: 52 LHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSS-- 109
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1584
P P PS + S +
Sbjct: 110 EDIKPPLGLNGVLKVPAHPSGNMASFTKHI 139
Score = 45.1 bits (106), Expect = 2e-04
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 11/119 (9%)
Query: 1706 AYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTS-PSYSPS--------SPTYSPSSPYNA 1756
+ ++ + + + + S +P+ PS P SP + SSP N
Sbjct: 6 HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65
Query: 1757 GGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
G P +S S P + P+ P S+ S S+++D K G
Sbjct: 66 MG--PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVL 122
Score = 39.3 bits (91), Expect = 0.010
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 5/80 (6%)
Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
+ T + S T SP+ S ++P P +SP +
Sbjct: 3 HHHHHHVDDDDKMFSTQVNSSLT----SPTGR-GSMAAPSLHPSLGPGIGSPGQLHSPIS 57
Query: 1775 GYSPSAPGYSPSSTSQYTPQ 1794
S G P + +P
Sbjct: 58 TLSSPINGMGPPFSVISSPM 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 2e-09
Identities = 56/329 (17%), Positives = 97/329 (29%), Gaps = 127/329 (38%)
Query: 860 YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENW--NPN 917
Y T +GD+I+F ++TL L + +K F ++ W NP+
Sbjct: 177 YQ-TYHVLVGDLIKFS------------AETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 918 ------YM------------LQ--EYIDDLKTI----KELRDVFDA---EVQKLEADRYQ 950
Y+ +Q Y+ K + ELR Q L
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT---- 279
Query: 951 LATEIATSGDSSWP-----LPVNLKRLIW---NAQKTFKVDPRRPSDMH----------- 991
A IA + SW + + L + + + PS +
Sbjct: 280 -AVAIAETD--SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 992 PMEVVEAVDK--LQERLKVV----PGEDPLSVEAQKNA-----------TLF-FNILLRS 1033
PM + + + +Q+ + P + + + N +L+ N+ LR
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 1034 TFA-----------SKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAA---Q 1079
A S+R LK +RFL P VA+
Sbjct: 396 AKAPSGLDQSRIPFSERKLK---------------FSNRFL-----P------VASPFHS 429
Query: 1080 SIGEPATQMTLNTFHYAGVSAKNVTLGVP 1108
+ PA+ + VS + +P
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Score = 50.4 bits (120), Expect = 7e-06
Identities = 73/408 (17%), Positives = 118/408 (28%), Gaps = 154/408 (37%)
Query: 591 LFRTAAWHADNDKGILTA----GDTLVRIEKGEL-----LSGTLCKKTLGTSTGSLIHVI 641
LFR + + ++ G+T E EL L + S +L +I
Sbjct: 145 LFRAVG---EGNAQLVAIFGGQGNTDDYFE--ELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 642 WEEVGPDAARKFLGHT----QWLVN-------YWLLQNAFS---IGI------------- 674
A K +WL N +LL S IG+
Sbjct: 200 RT---TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 675 ------------GDT-----------IADAKTMETINDTISKAKNNVKNLI-------KQ 704
G T IA+ + E+ ++ KA + L +
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA---ITVLFFIGVRCYEA 313
Query: 705 AQDKSLEPEPGRTMMESFEN-----------------KVNQVLNTARDEAGSSAQKSLSE 747
+ SL P + +S EN +V +N + Q +S
Sbjct: 314 YPNTSLPPS---ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 748 SNNLKAMVTAGS----KGSFINISQMTACVGQ-QNVEGKRIPFG-----FVDRTLP---- 793
N K +V +G G + + + A G Q+ RIPF F +R LP
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS----RIPFSERKLKFSNRFLPVASP 426
Query: 794 -HFTKDDYGPESRGFVENSYLRG--------LTPQEFFFHAMGGREGLIDTAVKTSETGY 844
H S L L F+A + + V + G
Sbjct: 427 FH---------S------HLLVPASDLINKDLVKNNVSFNA----KDI-QIPVYDTFDGS 466
Query: 845 --------IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
I R+V + + VK++ T + ++ F G G +
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF--GPGGASGL 512
Score = 49.7 bits (118), Expect = 1e-05
Identities = 75/467 (16%), Positives = 137/467 (29%), Gaps = 160/467 (34%)
Query: 1147 LEYTTLR-SVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAP--EKISPWLLRIE 1203
L + +L + T ++ + + ++E +F K E P E A E +P E
Sbjct: 11 LSHGSLEHVLLVPTASFF----IASQLQE--QFNKILPE-PTEGFAADDEPTTP----AE 59
Query: 1204 L--------NREMMVDKKLSMAAVAEKINQEFDDD---------LTCIFNDDNADKLILR 1246
L + + K V EF++ L +N L+
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 1247 ---IR-------IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMAL---RGVNLLAVMC 1293
I+ + K SA + + +A+ +G
Sbjct: 120 KELIKNYITARIMAKRPFDKKS---NSA----LFRAVGEGNAQLVAIFGGQGNT------ 166
Query: 1294 HED-VDARR---TTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSY------------ 1337
+D + R T + L+ + I+ L + +R + + +
Sbjct: 167 -DDYFEELRDLYQTYHVLVGDL----IKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 1338 ------VNYRHLA--------ILCDTMTYRGHLMAITR-HGINRNDTGPMMRCSFEETVD 1382
+Y L I + H + + G + ++ + +
Sbjct: 222 PSNTPDKDY--LLSIPISCPLI---GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 1383 ILLDAAVFAESD----YLRGVTENIMLGQLAPIGTGDC-----SLYLNDEMLKNAIELQ- 1432
++ A AE+D + V + + L IG C + L +L++++E
Sbjct: 277 LVT-AVAIAETDSWESFFVSVRK--AITVLFFIGV-RCYEAYPNTSLPPSILEDSLENNE 332
Query: 1433 -LPSYM---EGLEF-------GMTPARSP-----------------VSGTPYHDGMMSPG 1464
+PS M L T + P VSG P S
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP-----QS-- 385
Query: 1465 YLFSPNLRL----SPVTDAQ----FS---PYVGGMAFSPTSSPGYSP 1500
L+ NL L +P Q FS F P +SP +S
Sbjct: 386 -LYGLNLTLRKAKAPSGLDQSRIPFSERKL-KFSNRFLPVASPFHSH 430
Score = 48.1 bits (114), Expect = 3e-05
Identities = 84/552 (15%), Positives = 151/552 (27%), Gaps = 204/552 (36%)
Query: 979 TFKVDPRRPSDMHPMEVVEAVDKLQER-LKVVP--------GEDPLSVEAQKNATLFFNI 1029
V P+ +LQE+ K++P ++P + A L
Sbjct: 19 VLLV----PTASFF-----IASQLQEQFNKILPEPTEGFAADDEPTTP-----AELVGKF 64
Query: 1030 LLRSTFASKRVLKEHR-LTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT-- 1086
L + S V + + E E+ +L+ G I +AA+ + E T
Sbjct: 65 L---GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE-----GNDIHALAAKLLQENDTTL 116
Query: 1087 ---QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAK-- 1141
+ + + A + AK + S S + + A+
Sbjct: 117 VKTKELIKNYITARIMAK----------------RPFDKKSNSALFR---AVGEGNAQLV 157
Query: 1142 -------NVQCALE-----YTTLRS-----VTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
N E Y T + + E + +I ++ K + +
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET------LSELIRTTLDAEKVFTQ 211
Query: 1185 -------------MPDEDI---APEKIS----------------------PWLLRIELNR 1206
PD+D P IS P LR L
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIP--ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 1207 EMMVDKKLSMAAV--AEKINQEFDDDLTCIFNDDNADKLILRI--RIMNDEAPKGELNDE 1262
+ L A + F + A ++ I R + P L
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFV------SVRKAITVLFFIGVRC-YEAYPNTSLPPS 322
Query: 1263 SAEDDVFL-KKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
ED + + + S ML ++ + V + +
Sbjct: 323 ILEDSLENNEGVPSPML---SISNLTQEQVQDY---------------------VNKTNS 358
Query: 1322 ALLDELRVVISFDGSYVN-YRHLAILCDTMTYRGH---LMAITRH--------GINRNDT 1369
L +V IS VN ++L ++ G L + G++++
Sbjct: 359 HLPAGKQVEISL----VNGAKNL-VVS------GPPQSLYGLNLTLRKAKAPSGLDQS-- 405
Query: 1370 GPMMRCSFEE-----TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEM 1424
R F E + L A+ F S L ++ I L + +
Sbjct: 406 ----RIPFSERKLKFSNRFLPVASPF-HSHLLVPASDLI-NKDLV-----------KNNV 448
Query: 1425 LKNAIELQLPSY 1436
NA ++Q+P Y
Sbjct: 449 SFNAKDIQIPVY 460
Score = 44.3 bits (104), Expect = 4e-04
Identities = 59/325 (18%), Positives = 96/325 (29%), Gaps = 115/325 (35%)
Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI---APEKIS-----PWLLRIELN-REM 1208
A +VW D K Y DI P ++ RI N M
Sbjct: 1642 AQDVWNRAD----------NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 1209 MVDKKLSMAAVAEKINQEFDDDLT-CIFNDDNADKLILRIRIMNDEAPKGELNDESAEDD 1267
+ + + EKI +E ++ T F + KG L+
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTF-----------------RSEKGLLS------- 1727
Query: 1268 VFLKKIESNMLTE-----MALRGVNLLAVMCHE-DVDARRTTSNH-------LIEIIEVL 1314
T+ + L + + + A T + H L + +V+
Sbjct: 1728 ----------ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM--AITRHGINRNDTGPM 1372
IE + VV YRG M A+ R + R++ G M
Sbjct: 1778 SIE-------SLVEVV--------------------FYRGMTMQVAVPRDELGRSNYG-M 1809
Query: 1373 MRC-------SF-EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDC------SL 1418
+ SF +E + +++ + V N+ Q GD +
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV-AA-GDLRALDTVTN 1867
Query: 1419 YLNDEMLKN--AIELQLPSYMEGLE 1441
LN L+ IELQ +E +E
Sbjct: 1868 VLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 39.6 bits (92), Expect = 0.012
Identities = 45/284 (15%), Positives = 81/284 (28%), Gaps = 102/284 (35%)
Query: 713 EPGRTM-MESFENKVNQVLNTAR---DEAGSSAQKSLSES------NNLKAMVT--AGSK 760
E G M M+ ++ A+ + A + + + S NN + G K
Sbjct: 1628 EQG--MGMDLYKTS-----KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 761 GSFI--NISQMTACVGQQNVEGKRIP---FGFVDRTLPHFTKDDYGPE------------ 803
G I N S M + V+GK F ++ +T +
Sbjct: 1681 GKRIRENYSAMI---FETIVDGKLKTEKIFKEINEHSTSYT--FRSEKGLLSATQFTQPA 1735
Query: 804 -------------SRGFV------------ENS------------------YLRGLTPQE 820
S+G + E + + RG+T Q
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 821 FFFHAMGGREGLIDTAVKTSE--TGYIQRRLVKAMEDIMVKYDGTVR----NSLGD--VI 872
GR A+ + Q L +E + + V N V
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 873 QFLYGE-DGMDSVWIESQTLDSLKMKKSEFDK---AFRFEMDEE 912
G+ +D+V + L+ +K++K + + + E E
Sbjct: 1856 A---GDLRALDTV---TNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 60.3 bits (145), Expect = 3e-09
Identities = 36/225 (16%), Positives = 63/225 (28%), Gaps = 13/225 (5%)
Query: 1414 GDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRL 1473
G CS L ++ + Q + + + P+R MS P
Sbjct: 166 GSCSRALEHKVDLEDYKNQQKQLEQVIAINLLPSRDI---QYLPILKMSTITGPVPREFK 222
Query: 1474 SPVTDA----QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPT 1529
S + +A + + + G + G +P SP P +
Sbjct: 223 SQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRK-PGTSSIGNV 281
Query: 1530 SPGY----SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
+PG S + PG + T P S +P + + P
Sbjct: 282 NPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPG 341
Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
S ++ +++ S S P S P+SP
Sbjct: 342 SAGTWNPGRPEPGSAGTWNTGSSGSSSFRPD-SSGHGNIRPSSPD 385
Score = 58.0 bits (139), Expect = 2e-08
Identities = 30/197 (15%), Positives = 50/197 (25%), Gaps = 3/197 (1%)
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
+ + P+ S + S +P + T
Sbjct: 190 QVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLE-MQQTKMVLETF 248
Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSP 1716
G +P SP TS + SY P S+ P S
Sbjct: 249 GGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWN 308
Query: 1717 ASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGY 1776
P S ++ +++P P P S G P+ + + S+G
Sbjct: 309 PGRPEPGSAGTWNPGRPEPGSAGTWNPGRP--EPGSAGTWNPGRPEPGSAGTWNTGSSGS 366
Query: 1777 SPSAPGYSPSSTSQYTP 1793
S P S + +
Sbjct: 367 SSFRPDSSGHGNIRPSS 383
Score = 30.6 bits (68), Expect = 5.5
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 15/115 (13%)
Query: 1443 GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSS 1502
G + +P P G +PG P P + ++P P S+ ++P
Sbjct: 289 GSSGTWNPGRPEPGSAGTWNPG---RPE----PGSAGTWNPGRPE----PGSAGTWNPGR 337
Query: 1503 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 1557
P P S G ++ ++ S G S P S G S T
Sbjct: 338 PE--PGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPD--SSGHGNIRPSSPDWGT 388
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 56.6 bits (135), Expect = 8e-09
Identities = 22/155 (14%), Positives = 34/155 (21%), Gaps = 2/155 (1%)
Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
SP +P P+ T + P SPS P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
+ T + P S + P + + P + S + S P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
+ G P Y
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTAT 154
Score = 56.2 bits (134), Expect = 1e-08
Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 3/149 (2%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
SPA +P P+ T + P SPS P P P T
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGP---PVPPPPKHTPSKEVKQEQI 58
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
S + P +P+ P+ + + + + + + S S +
Sbjct: 59 LSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETF 118
Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
+ T S P + Q+
Sbjct: 119 PATVNGTVEGGSGAGRLDLPPGFMFKVQA 147
Score = 55.1 bits (131), Expect = 3e-08
Identities = 20/144 (13%), Positives = 33/144 (22%), Gaps = 2/144 (1%)
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
SP+ +P P+ T + P SPS P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
+ T + P S + P + + P A S + P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAY 1707
+ P +
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMF 143
Score = 55.1 bits (131), Expect = 3e-08
Identities = 24/157 (15%), Positives = 34/157 (21%), Gaps = 2/157 (1%)
Query: 1529 TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
SP +P P T A P SPS P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
+ T + P S + P + A P + S + S P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
+ P Y+ T
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDT 156
Score = 53.5 bits (127), Expect = 9e-08
Identities = 23/143 (16%), Positives = 41/143 (28%), Gaps = 3/143 (2%)
Query: 1585 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
SP+ +P P+ T A P SP+ P P P T
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGP---PVPPPPKHTPSKEVKQEQI 58
Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
S ++ P +P+ PA + G + + T + + S + +
Sbjct: 59 LSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETF 118
Query: 1705 LAYSPSSPRLSPASPYSPTSPNY 1727
A + + P +
Sbjct: 119 PATVNGTVEGGSGAGRLDLPPGF 141
Score = 53.2 bits (126), Expect = 1e-07
Identities = 22/157 (14%), Positives = 33/157 (21%), Gaps = 2/157 (1%)
Query: 1522 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
SP +P P + P SP+ P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
+ T + P S + P + A P A S + S P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
+ P Y+ T
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDT 156
Score = 52.8 bits (125), Expect = 2e-07
Identities = 21/157 (13%), Positives = 33/157 (21%), Gaps = 2/157 (1%)
Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
SP +P P T P SP+ P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
+ T + P S + P + + P A S + + P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
+ P Y+ T
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDT 156
Score = 52.8 bits (125), Expect = 2e-07
Identities = 25/164 (15%), Positives = 43/164 (26%), Gaps = 8/164 (4%)
Query: 1599 TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
SP+ +P PA T A P SPS P P P T
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGP---PVPPPPKHTPSKEVKQEQI 58
Query: 1659 YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
S + P +P+ P+ + + + + ++ PA
Sbjct: 59 LSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAAS-----EAASSSLPAV 113
Query: 1719 PYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPD 1762
+ T S P + + ++ + D
Sbjct: 114 VVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTD 157
Score = 51.6 bits (122), Expect = 5e-07
Identities = 20/157 (12%), Positives = 32/157 (20%), Gaps = 2/157 (1%)
Query: 1501 SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS 1560
SP +P P T P SP P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
+ T + P S + P + + P + S + + P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
+ P Y+ T
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDT 156
Score = 50.5 bits (119), Expect = 1e-06
Identities = 21/157 (13%), Positives = 32/157 (20%), Gaps = 2/157 (1%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
SP +P P T P SP P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
+ T + P S + P + + P + S + S P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
+ P Y+ T
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDT 156
Score = 49.7 bits (117), Expect = 2e-06
Identities = 20/147 (13%), Positives = 35/147 (23%), Gaps = 1/147 (0%)
Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
SP+ +P P+ T + P SP+ P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
+ S + A P + P ++ S + S P+ + +
Sbjct: 62 FEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPAT 121
Query: 1754 YNAGGGNPDYSPSSPQYSPSAGYSPSA 1780
N P + A
Sbjct: 122 VNGTVEGGS-GAGRLDLPPGFMFKVQA 147
Score = 49.3 bits (116), Expect = 3e-06
Identities = 20/144 (13%), Positives = 33/144 (22%), Gaps = 4/144 (2%)
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
SPA +P P+ T + + SP+ P P +P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGA----TLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQ 57
Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
S S S + P P + + +S
Sbjct: 58 ILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVET 117
Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDY 1763
+ + T S P +
Sbjct: 118 FPATVNGTVEGGSGAGRLDLPPGF 141
Score = 48.9 bits (115), Expect = 4e-06
Identities = 24/160 (15%), Positives = 43/160 (26%), Gaps = 1/160 (0%)
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
SP+ +P P T + P SP+ P P K++PS
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPV-PPPPKHTPSKEVKQEQILS 60
Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
+ P +P+ + + + + A P+ + A
Sbjct: 61 LFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPA 120
Query: 1775 GYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSS 1814
+ + G S + P D T D+
Sbjct: 121 TVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQ 160
Score = 47.0 bits (110), Expect = 2e-05
Identities = 20/144 (13%), Positives = 35/144 (24%), Gaps = 4/144 (2%)
Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
SP+ +P P+ T + P SPS P P +PS
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGP----PVPPPPKHTPSKEVKQEQ 57
Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
+ + +S P + +S + +S
Sbjct: 58 ILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVET 117
Query: 1747 TYSPSSPYNAGGGNPDYSPSSPQY 1770
+ + GG P +
Sbjct: 118 FPATVNGTVEGGSGAGRLDLPPGF 141
Score = 37.8 bits (86), Expect = 0.017
Identities = 23/147 (15%), Positives = 39/147 (26%), Gaps = 4/147 (2%)
Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYS 1728
SP +P P T + P+S PS P S
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKS----PSQLRKGPPVPPPPKHTPSKEVKQEQ 57
Query: 1729 PTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSST 1788
S P S ++P+ + AGG P P + ++ + S+ T
Sbjct: 58 ILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVET 117
Query: 1789 SQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
T + + + +
Sbjct: 118 FPATVNGTVEGGSGAGRLDLPPGFMFK 144
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 55.5 bits (133), Expect = 9e-08
Identities = 18/134 (13%), Positives = 31/134 (23%), Gaps = 7/134 (5%)
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPAYSPTSPAYSP 1619
+S + S P S S + + + P P P + P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG--YSPTS 1677
+ + P+ T+ P + + PA PG + P
Sbjct: 63 DTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 1678 PSYSPTSPTYSPTS 1691
S
Sbjct: 122 EPDPVRVEEVSRRI 135
Score = 55.1 bits (132), Expect = 1e-07
Identities = 16/134 (11%), Positives = 31/134 (23%), Gaps = 7/134 (5%)
Query: 1529 TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSP 1584
+S + S P S + + + + P P P + P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 1585 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS--YSPTS 1642
+ + + P+ T+ P A + P+ P + P
Sbjct: 63 DTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 1643 PSYSPTSPSYSPTS 1656
S
Sbjct: 122 EPDPVRVEEVSRRI 135
Score = 54.8 bits (131), Expect = 2e-07
Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 3/126 (2%)
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY-SPTSPSYSPTSPSYSPTSPSYSPTSP 1650
+S + S P S + + + + + P + P+ P + P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 1651 SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPS 1710
PT PG + +P+ S P + + P L + P
Sbjct: 63 DTVTGDSVLQRILRG--PTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120
Query: 1711 SPRLSP 1716
Sbjct: 121 PEPDPV 126
Score = 54.8 bits (131), Expect = 2e-07
Identities = 18/134 (13%), Positives = 31/134 (23%), Gaps = 7/134 (5%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYS----PTSPGYSPTSPTYSPSSPGYSP 1549
SS + S G P S + + + P P P + G P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTS 1607
+ + P+ T+ P + + P+ P + P
Sbjct: 63 DTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 1608 PAYSPTSPAYSPTS 1621
S
Sbjct: 122 EPDPVRVEEVSRRI 135
Score = 54.0 bits (129), Expect = 3e-07
Identities = 16/137 (11%), Positives = 30/137 (21%), Gaps = 6/137 (4%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
+S + S P S S + + + P P P +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAAL---HPPVTVPDPAPPPPPAPAAG 59
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA--YS 1667
P + + P+ T+ P + + P+ P +
Sbjct: 60 NPPDTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118
Query: 1668 PTSPGYSPTSPSYSPTS 1684
P S
Sbjct: 119 PVPEPDPVRVEEVSRRI 135
Score = 53.2 bits (127), Expect = 5e-07
Identities = 19/137 (13%), Positives = 32/137 (23%), Gaps = 6/137 (4%)
Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
SS + S G P S + + + + P P P +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAAL---HPPVTVPDPAPPPPPAPAAG 59
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA--YS 1625
P + + + P+ T+ P A + PA P +
Sbjct: 60 NPPDTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118
Query: 1626 PTSPSYSPTSPSYSPTS 1642
P S
Sbjct: 119 PVPEPDPVRVEEVSRRI 135
Score = 52.5 bits (125), Expect = 8e-07
Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 6/128 (4%)
Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
+S + S P S S + + + A P P P +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDF---LAALHPPVTVPDPAPPPPPAPAAG 59
Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS--YN 1695
P + + + P+ T+ G P + + P P ++
Sbjct: 60 NPPDTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118
Query: 1696 PQSAKYSP 1703
P
Sbjct: 119 PVPEPDPV 126
Score = 51.7 bits (123), Expect = 1e-06
Identities = 19/134 (14%), Positives = 33/134 (24%), Gaps = 9/134 (6%)
Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPAYSP 1668
+S + S P S S + + + P P P + P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 1669 TSPGYSPTSPSYSPTSPTYSPTS---PSYNPQSAKYSPSLAYSPSSP-RLSPASPYSPTS 1724
+ + PT T+ P+ + A +P + R P + P
Sbjct: 63 DTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 1725 PNYSPTSSSYSPTS 1738
S
Sbjct: 122 EPDPVRVEEVSRRI 135
Score = 46.7 bits (110), Expect = 6e-05
Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 9/125 (7%)
Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSPGYSPTSPSYSPTSP 1685
+S + S P S S + + + + P T P +P P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPP--VTVPDPAPPPPPAPA--- 57
Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS 1745
+P + P+ P + +P P + + +P + +
Sbjct: 58 ---AGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPG 114
Query: 1746 PTYSP 1750
+ P
Sbjct: 115 LYHHP 119
Score = 33.2 bits (75), Expect = 0.89
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 1710 SSPRLSPA-SPYSPTSPNYSPTSSSYSPTSPSY-SPSSPTYSPSSPYNAGGGNPDYSPSS 1767
SS S P + S+S + + + + P + P P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 1768 PQYSPSAGYSPSAPGYSPSSTSQYTP 1793
+ + G + T+ P
Sbjct: 63 DTVTGDSVLQRILRGPTGPGTTSLAP 88
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 56.1 bits (134), Expect = 1e-07
Identities = 27/198 (13%), Positives = 46/198 (23%), Gaps = 13/198 (6%)
Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
S + + + + T + + PG + S + S P+ P +
Sbjct: 3 SGKKAAAAAAAAAAAATGTEAGPGTAGGS-----ENGSEVAAQPAGLSGPAEVGPGAVGE 57
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
P + SP P S A P + + +P TS
Sbjct: 58 RTPRKKEPPRA------SPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTS 111
Query: 1643 PSYSP-TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
S + YS P P +P N +
Sbjct: 112 RRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEE-NESEPEE 170
Query: 1702 SPSLAYSPSSPRLSPASP 1719
+ + RL
Sbjct: 171 PSGVEGAAFQSRLPHDRM 188
Score = 55.8 bits (133), Expect = 1e-07
Identities = 27/185 (14%), Positives = 40/185 (21%), Gaps = 12/185 (6%)
Query: 1489 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
A + T + P + G S + G S + +P
Sbjct: 15 AAAATGTEA--------GPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPP 66
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTS 1607
SP P S + P + + +P TS S
Sbjct: 67 RASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDES 126
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPA 1665
A YS P P +P + P + P
Sbjct: 127 LANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENE-SEPEEPSGVEGAAFQSRLPH 185
Query: 1666 YSPTS 1670
TS
Sbjct: 186 DRMTS 190
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 55.0 bits (132), Expect = 1e-07
Identities = 23/155 (14%), Positives = 37/155 (23%), Gaps = 11/155 (7%)
Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
S + +S + S S + Y + SP S P
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65
Query: 1616 --AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT---------SP 1664
Y S S P + SP S SY +SP+ P
Sbjct: 66 LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPD 125
Query: 1665 AYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
+ + + S ++ + A
Sbjct: 126 EPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMA 160
Score = 51.2 bits (122), Expect = 2e-06
Identities = 22/155 (14%), Positives = 38/155 (24%), Gaps = 5/155 (3%)
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
S + +S + S S + Y + SP S + P
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65
Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
+ + P+ S Y+ SP S SY +SP P
Sbjct: 66 LQGYQTYGHFPSRAIKSEYPDPYTS-----SPESIMGYSYMDSYQTSSPASIPHLILELL 120
Query: 1697 QSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
+ P + + + S +
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGL 155
Score = 50.8 bits (121), Expect = 2e-06
Identities = 22/156 (14%), Positives = 34/156 (21%), Gaps = 7/156 (4%)
Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1561
S + +S + S + Y S SP S P
Sbjct: 8 SQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQ 67
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
+ + P+ S P + SP S SY +SPA P
Sbjct: 68 GYQTYGHFPSRAIKSEY-----PDPYTSSPESIMGYSYMDSYQTSSPASIP--HLILELL 120
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
+ + S +
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLM 156
Score = 50.4 bits (120), Expect = 3e-06
Identities = 23/149 (15%), Positives = 33/149 (22%), Gaps = 5/149 (3%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
P+ S +S G A PT SP S + +
Sbjct: 8 SQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQ 67
Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY-----SPTS 1635
Y S S P + SP S +Y +SPA P
Sbjct: 68 GYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEP 127
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
+ + S +
Sbjct: 128 QVQAKIMAYLQQEQANRSKHEKLSTFGLM 156
Score = 49.2 bits (117), Expect = 9e-06
Identities = 23/111 (20%), Positives = 32/111 (28%), Gaps = 3/111 (2%)
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
S + +S + S S + Y + SP S T P
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65
Query: 1693 SYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
Q+ + PS A P SP S SY +SP+ P
Sbjct: 66 LQGYQTYGHFPSRAIKSEYP---DPYTSSPESIMGYSYMDSYQTSSPASIP 113
Score = 48.5 bits (115), Expect = 1e-05
Identities = 22/154 (14%), Positives = 32/154 (20%), Gaps = 4/154 (2%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
S + SS + S + Y + SP S P
Sbjct: 5 EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64
Query: 1552 P--AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
Y S S P + SP S SY +SP+ P
Sbjct: 65 SLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIP--HLILELLKC 122
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
+ + S +
Sbjct: 123 EPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLM 156
Score = 44.2 bits (104), Expect = 3e-04
Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 3/107 (2%)
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
S + +S + S + Y + +P S P +
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65
Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
S + P + SP S +Y SSP
Sbjct: 66 LQGYQTYGHFPSRAIKSE---YPDPYTSSPESIMGYSYMDSYQTSSP 109
Score = 37.3 bits (86), Expect = 0.045
Identities = 17/134 (12%), Positives = 28/134 (20%), Gaps = 6/134 (4%)
Query: 1454 TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYS 1513
+ ++ L + SP + S + S GY S +
Sbjct: 29 SASKGLPLNHAALPPTDYDRSPFVTSPISMTMP----PHGSLQGYQTYGHFPSRAIKSEY 84
Query: 1514 PTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP 1573
P SP S Y +SP P +
Sbjct: 85 PDPYTSSPESIMGYSYMDSYQTSSPASIPHL--ILELLKCEPDEPQVQAKIMAYLQQEQA 142
Query: 1574 SYSPTSPSYSPTSP 1587
+ S +
Sbjct: 143 NRSKHEKLSTFGLM 156
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion,
viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A
{Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A*
Length = 703
Score = 48.8 bits (116), Expect = 2e-05
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 1514 PTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP 1573
P +P SP +PG + + + T +P + G +PT P + + +P P
Sbjct: 2 PAAPT-SPGTPGVAAATQAANGGPATPAPPALGAAPTGDP----KPKKNKKPKNPTPPRP 56
Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
+ + + + T ++ P
Sbjct: 57 AGDNATVAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 48.8 bits (116), Expect = 2e-05
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
P +PT SP +PG + + A + + +P + +PT P + + +P P
Sbjct: 2 PAAPT-SPGTPGVAAATQAANGGPATPAPPALGAAPTGDP----KPKKNKKPKNPTPPRP 56
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
+ + + + T + P
Sbjct: 57 AGDNATVAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 46.1 bits (109), Expect = 1e-04
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
SP +PG + ++ + +P P G P +P +P PA +
Sbjct: 7 SPGTPGVAAATQAANGGPA--TPAPPALGAAPTGDPKPKKNKKPKNP--TPPRPAGDNAT 62
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
+ + T ++ P
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 44.6 bits (105), Expect = 3e-04
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
+PTSP + + + + +P +P+ P +P P+ +
Sbjct: 4 APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNP-TPPRPAGDNAT 62
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
A + T ++ P
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 43.8 bits (103), Expect = 5e-04
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 5/96 (5%)
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
P +P SP +P + + + + + P P+ + P + + +P P
Sbjct: 2 PAAPT-SPGTPGVAAATQAANGGPAT--PAPPA--LGAAPTGDPKPKKNKKPKNPTPPRP 56
Query: 1609 AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
A + A + T ++ P
Sbjct: 57 AGDNATVAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 43.8 bits (103), Expect = 6e-04
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 1/90 (1%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
+PTSPG + + ++ G T + + P + + +P P+ +
Sbjct: 4 APTSPGTPGVAAA-TQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
+ + T + P
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 43.4 bits (102), Expect = 6e-04
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 1/90 (1%)
Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
+PTSP P A + + T + + P + + +P P+ +
Sbjct: 4 APTSPGT-PGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62
Query: 1664 PAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
A + T + P
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 43.4 bits (102), Expect = 7e-04
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 2/113 (1%)
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
+PTSP + + + + +P +P+ P P G + T
Sbjct: 4 APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATV 63
Query: 1678 PSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS--PYSPTSPNYS 1728
+ T + + N + Y + + P P NY+
Sbjct: 64 AAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYT 116
Score = 43.4 bits (102), Expect = 8e-04
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
+PTSP + + + + +P +P+ P +P PA +
Sbjct: 4 APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNP-TPPRPAGDNAT 62
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
A + T ++ P
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 42.6 bits (100), Expect = 0.001
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 1/89 (1%)
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
+PTSP P A + + T + + P + + +P P+ +
Sbjct: 4 APTSPGT-PGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62
Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
+ + T ++ P
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPP 91
Score = 42.6 bits (100), Expect = 0.001
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
+PTSP + + + + +P +P+ P +P PA +
Sbjct: 4 APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNP-TPPRPAGDNAT 62
Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
+ + T ++ P
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 42.3 bits (99), Expect = 0.002
Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 1/90 (1%)
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
+PTSP + + + + +P +P P +P P+ +
Sbjct: 4 APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNP-TPPRPAGDNAT 62
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
+ + T ++ P
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 41.9 bits (98), Expect = 0.002
Identities = 12/110 (10%), Positives = 29/110 (26%), Gaps = 3/110 (2%)
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
+PTSP + + + + T + + P + + +P P+ +
Sbjct: 4 APTSPGTPGVAAA-TQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62
Query: 1650 PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS--PSYNPQ 1697
+ + T + P T + P+
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEG 112
Score = 41.9 bits (98), Expect = 0.002
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 4/91 (4%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
+ +PG + ++ + +P P G P +PT P P
Sbjct: 6 TSPGTPGVAAATQAANGGPA--TPAPPALGAAPTGDPKPKKNKKPKNPT--PPRPAGDNA 61
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
+ A + T ++ P
Sbjct: 62 TVAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 41.5 bits (97), Expect = 0.003
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
+P+SPG PG + + + +P P P +P +P
Sbjct: 4 APTSPGT----PGVAAATQAANGGPA--TPAPPALGAAPTGDPKPKKNKKPKNP--TPPR 55
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1595
P+ + + + T ++ P
Sbjct: 56 PAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 41.1 bits (96), Expect = 0.004
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
P +P SP +P + + A + + P P+ + P + + +P P
Sbjct: 2 PAAPT-SPGTPGVAAATQAANGGPAT--PAPPA--LGAAPTGDPKPKKNKKPKNPTPPRP 56
Query: 1665 AYSPTSPGYSPTSPSYSPTSPTYSPTSPSY 1694
A + + T ++
Sbjct: 57 AGDNATVAAGHATLREHLRDIKAENTDANF 86
Score = 38.8 bits (90), Expect = 0.022
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 4/94 (4%)
Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS-YNPQSAKYSPSLAYSPSSPRLSPASP 1719
P +P SP +PG + + + + +P P+ + P P +P +
Sbjct: 2 PAAPT-SPGTPGVAAATQAANGGPA--TPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58
Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
+ T T + + + + Y P
Sbjct: 59 DNATVAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 37.2 bits (86), Expect = 0.056
Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 2/112 (1%)
Query: 1698 SAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNA- 1756
+A SP ++ + + P +P P + + P +PT + NA
Sbjct: 3 AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62
Query: 1757 -GGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKN 1807
G+ + P+ + + R T + +N
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114
>1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II;
guanylyltransferase, transcription, capping, CTD, mRNA;
HET: SEP G GTP; 2.70A {Candida albicans}
Length = 26
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1554 YSPTSPSYSPTSPSYSPTSPS 1574
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1561 YSPTSPSYSPTSPSYSPTSPS 1581
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1568 YSPTSPSYSPTSPSYSPTSPS 1588
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1575 YSPTSPSYSPTSPSYSPTSPS 1595
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1582 YSPTSPSYSPTSPSYSPTSPS 1602
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1624 YSPTSPSYSPTSPSYSPTSPS 1644
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1631 YSPTSPSYSPTSPSYSPTSPS 1651
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1638 YSPTSPSYSPTSPSYSPTSPS 1658
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 41.5 bits (97), Expect = 3e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Query: 1673 YSPTSPSYSPTSPTYSPTSPS 1693
YSPTSPSYSPTSP+YSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 41.5 bits (97), Expect = 3e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Query: 1589 YSPTSPSYSPTSPSYSPTSPA 1609
YSPTSPSYSPTSPSYSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 41.5 bits (97), Expect = 3e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Query: 1645 YSPTSPSYSPTSPSYSPTSPA 1665
YSPTSPSYSPTSPSYSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 41.1 bits (96), Expect = 4e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Query: 1547 YSPTSPAYSPTSPSYSPTSPS 1567
YSPTSP+YSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 41.1 bits (96), Expect = 4e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Query: 1617 YSPTSPAYSPTSPSYSPTSPS 1637
YSPTSP+YSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 41.1 bits (96), Expect = 4e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Query: 1596 YSPTSPSYSPTSPAYSPTSPA 1616
YSPTSPSYSPTSP+YSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 40.7 bits (95), Expect = 5e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Query: 1610 YSPTSPAYSPTSPAYSPTSPS 1630
YSPTSP+YSPTSP+YSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 40.7 bits (95), Expect = 6e-05
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1659 YSPTSPAYSPTSPGYSPTSPS 1679
YSPTSP+YSPTSP YSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 40.7 bits (95), Expect = 6e-05
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1666 YSPTSPGYSPTSPSYSPTSPT 1686
YSPTSP YSPTSPSYSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 40.3 bits (94), Expect = 7e-05
Identities = 18/21 (85%), Positives = 21/21 (100%)
Query: 1603 YSPTSPAYSPTSPAYSPTSPA 1623
YSPTSP+YSPTSP+YSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 40.3 bits (94), Expect = 7e-05
Identities = 19/20 (95%), Positives = 20/20 (100%)
Query: 1652 YSPTSPSYSPTSPAYSPTSP 1671
YSPTSPSYSPTSP+YSPTSP
Sbjct: 1 YSPTSPSYSPTSPSYSPTSP 20
Score = 40.0 bits (93), Expect = 1e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Query: 1519 YSPTSPGYSPTSPGYSPTSPT 1539
YSPTSP YSPTSP YSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 39.2 bits (91), Expect = 2e-04
Identities = 17/21 (80%), Positives = 20/21 (95%)
Query: 1533 YSPTSPTYSPSSPGYSPTSPA 1553
YSPTSP+YSP+SP YSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 39.2 bits (91), Expect = 2e-04
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 1512 YSPTSPGYSPTSPGYSPTSP 1531
YSPTSP YSPTSP YSPTSP
Sbjct: 1 YSPTSPSYSPTSPSYSPTSP 20
Score = 39.2 bits (91), Expect = 2e-04
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 1540 YSPSSPGYSPTSPAYSPTSPS 1560
YSP+SP YSPTSP+YSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 38.4 bits (89), Expect = 4e-04
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1720 YSPTSPNYSPTSSSYSPTSPS 1740
YSPTSP+YSPTS SYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 38.4 bits (89), Expect = 4e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Query: 1526 YSPTSPGYSPTSPTYSPSSP 1545
YSPTSP YSPTSP+YSP+SP
Sbjct: 1 YSPTSPSYSPTSPSYSPTSP 20
Score = 38.4 bits (89), Expect = 4e-04
Identities = 17/20 (85%), Positives = 20/20 (100%)
Query: 1734 YSPTSPSYSPSSPTYSPSSP 1753
YSPTSPSYSP+SP+YSP+SP
Sbjct: 1 YSPTSPSYSPTSPSYSPTSP 20
Score = 38.0 bits (88), Expect = 5e-04
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 1505 YSPSSPGYSPTSPGYSPTSP 1524
YSP+SP YSPTSP YSPTSP
Sbjct: 1 YSPTSPSYSPTSPSYSPTSP 20
Score = 37.3 bits (86), Expect = 0.001
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 1727 YSPTSSSYSPTSPSYSPSSPT 1747
YSPTS SYSPTSPSYSP+SP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 36.9 bits (85), Expect = 0.001
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 1498 YSPSSPGYSPSSPGYSPTSP 1517
YSP+SP YSP+SP YSPTSP
Sbjct: 1 YSPTSPSYSPTSPSYSPTSP 20
Score = 34.2 bits (78), Expect = 0.010
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 1680 YSPTSPTYSPTSPSYNPQS 1698
YSPTSP+YSPTSPSY+P S
Sbjct: 1 YSPTSPSYSPTSPSYSPTS 19
Score = 31.1 bits (70), Expect = 0.17
Identities = 15/21 (71%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
Query: 1490 FSPTSSPGYSPSSPGYSPSSP 1510
+SPTS P YSP+SP YSP+SP
Sbjct: 1 YSPTS-PSYSPTSPSYSPTSP 20
Score = 29.9 bits (67), Expect = 0.34
Identities = 15/21 (71%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 1707 YSPSSPRLSPASP-YSPTSPN 1726
YSP+SP SP SP YSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
Score = 28.8 bits (64), Expect = 0.98
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 1687 YSPTSPSYNPQSAKYSPS 1704
YSPTSPSY+P S YSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPT 18
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 46.4 bits (109), Expect = 3e-05
Identities = 21/162 (12%), Positives = 29/162 (17%), Gaps = 3/162 (1%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
S P PG P G P G P +
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP--HGGGWGQ-PHGGGWGQPH 58
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1618
P P+ P + + + + A Y
Sbjct: 59 GGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYM 118
Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
S P S Y + P Y P +
Sbjct: 119 LGSAMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSN 160
Score = 45.2 bits (106), Expect = 6e-05
Identities = 22/160 (13%), Positives = 30/160 (18%), Gaps = 8/160 (5%)
Query: 1509 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY----SPTSPSYSPT 1564
S G++ Y PG P G P P +
Sbjct: 2 SKKRPKPGGGWNTGGSRY----PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQP 57
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
P P+ P + A + + A Y
Sbjct: 58 HGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGY 117
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
S P S Y + P Y P
Sbjct: 118 MLGSAMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQ 157
Score = 44.1 bits (103), Expect = 2e-04
Identities = 22/157 (14%), Positives = 32/157 (20%), Gaps = 3/157 (1%)
Query: 1483 PYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSP 1542
GG + PG P G P G P G+
Sbjct: 7 KPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP--HGGGWGQ-PHGGGWGQPHGGGWG 63
Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
G P P+ P + + + + + Y S
Sbjct: 64 QPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAM 123
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
P S Y + P Y P +
Sbjct: 124 SRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSN 160
Score = 44.1 bits (103), Expect = 2e-04
Identities = 22/167 (13%), Positives = 33/167 (19%), Gaps = 7/167 (4%)
Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG 1546
G P G++ Y PG P G P P G
Sbjct: 1 GSKKRPKPGGGWNTGGSRY----PGQGSPGGNRYPPQGGGGWGQPHGGGWGQ---PHGGG 53
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
+ P P+ P + + + + +
Sbjct: 54 WGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGG 113
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
Y S P S Y + P Y P +
Sbjct: 114 LGGYMLGSAMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSN 160
Score = 43.7 bits (102), Expect = 2e-04
Identities = 19/159 (11%), Positives = 29/159 (18%), Gaps = 4/159 (2%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPAY 1610
S P + P + P P P +
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
P P+ P + + + + + Y S
Sbjct: 62 WGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGS 121
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSP 1709
P S Y + P Y P YS
Sbjct: 122 AMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSN 160
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune
system; NMR {Homo sapiens}
Length = 512
Score = 45.0 bits (106), Expect = 2e-04
Identities = 38/290 (13%), Positives = 65/290 (22%), Gaps = 25/290 (8%)
Query: 1514 PTSPGYSPTSPGYSPTSPGYSPTSPTYSP---SSPGYSPTSPAYSPTSPSYSPTSPSYSP 1570
S + + S P + GY PTS + + S ++
Sbjct: 126 HVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPE 185
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
S S ++P Y + S S P SP +S +
Sbjct: 186 IQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQP 245
Query: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTY 1687
S + +P + + + T S T P
Sbjct: 246 QAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQP------LGV 299
Query: 1688 SPTSPSYNPQSAKYSPSLA-----YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS 1742
+P+ + + L+ + S S
Sbjct: 300 YLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNG-SQS 358
Query: 1743 PSSPTYSPSSPYNAGG------GNPDY-SPSSPQYSPSAGYSPSAPGYSP 1785
S P S +NAG +P A +P +
Sbjct: 359 QHSRLTLPRSLWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNL 408
Score = 41.9 bits (98), Expect = 0.002
Identities = 28/195 (14%), Positives = 55/195 (28%), Gaps = 7/195 (3%)
Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS---PSYSPTSPSYSPTSPAYSPTSPGYSP 1675
S A + + S P S + Y PTS + + S +
Sbjct: 126 HVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPE 185
Query: 1676 TSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYS 1735
S + ++P + +Y + ++ S + P SP +S +
Sbjct: 186 IQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRW--PESPKAQASSVPTA 243
Query: 1736 PTSPSYSPSSPTYSPSSPYNAGGGNPDY--SPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
S + T +P++ N G G + + +P P ++
Sbjct: 244 QPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLT 303
Query: 1794 QTNRDDSTTKDDKNT 1808
+D T
Sbjct: 304 PAVQDLWLRDKATFT 318
Score = 41.2 bits (96), Expect = 0.003
Identities = 47/336 (13%), Positives = 82/336 (24%), Gaps = 41/336 (12%)
Query: 1449 SPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS 1508
P + + L + + VT + Y+G + + P Y S
Sbjct: 141 ISGCRHPKDNSPVVLACLIT-GYHPTSVT---VTWYMGTQSQPQRTFPEIQRRDSYYMTS 196
Query: 1509 SPGYSPTSPGYSPT-------SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1561
S +P + S P SP SS + S +
Sbjct: 197 SQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATT 256
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPAYSPTSPAYSPT 1620
+P + + + T S T +P +
Sbjct: 257 APATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTP---AVQDLWLRD 313
Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
++ + PT ++ + S S P S
Sbjct: 314 KATFTCFVVGSDLKDAHLTWEVAGKVPTGGVE--EGLLERHSNGSQSQHSRLTLPRSLWN 371
Query: 1681 SPTSPTYSPTSPSY-NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPN---------YSP- 1729
+ TS T + PS + A +P L+ + P +SP
Sbjct: 372 AGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPP 431
Query: 1730 -------------TSSSYSPTSPSYSPSSPTYSPSS 1752
+S ++P P P S T+ S
Sbjct: 432 NILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWS 467
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase,
rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB:
3odx_A
Length = 536
Score = 44.3 bits (104), Expect = 3e-04
Identities = 22/122 (18%), Positives = 28/122 (22%), Gaps = 4/122 (3%)
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
P P + P T PS A +PG S S
Sbjct: 42 EPQVPDFRHLKAEVDAEKPG--ATDRKGGVGMPSRDRNIGAPGQDTPGVSLHPLSLDSPD 99
Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYSPSSPRL--SPASPYSPTSPNYSPTSSSYSPTSPSYS 1742
+P S+ P S + P A SP + S P
Sbjct: 100 REPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEP 159
Query: 1743 PS 1744
P
Sbjct: 160 PG 161
Score = 43.5 bits (102), Expect = 6e-04
Identities = 19/122 (15%), Positives = 25/122 (20%), Gaps = 2/122 (1%)
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
P P + P T PS + +P S S
Sbjct: 42 EPQVPDFRHLKAEVDAEKPG--ATDRKGGVGMPSRDRNIGAPGQDTPGVSLHPLSLDSPD 99
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
+P S P S S + + SP S P
Sbjct: 100 REPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEP 159
Query: 1661 PT 1662
P
Sbjct: 160 PG 161
Score = 42.7 bits (100), Expect = 0.001
Identities = 20/138 (14%), Positives = 29/138 (21%), Gaps = 4/138 (2%)
Query: 1581 SYSPTSPSYSPTSPSY-SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
+ S + P P + P T PS +
Sbjct: 25 TKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKP--GATDRKGGVGMPSRDRNIGAPG 82
Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP-SYSPTSPTYSPTSPSYNPQS 1698
+P S S +P S P S S +P T
Sbjct: 83 QDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPG 142
Query: 1699 AKYSPSLAYSPSSPRLSP 1716
+ P + P P
Sbjct: 143 DEGEPGRSGLELEPEEPP 160
Score = 42.0 bits (98), Expect = 0.002
Identities = 27/173 (15%), Positives = 37/173 (21%), Gaps = 8/173 (4%)
Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP 1545
G F G S S + + G P P + P
Sbjct: 4 SGRNFFRKKVMGNRRSDEPAKTKKGLSSILDA--ARWNRG-EPQVPDFRHLKAEVDAEKP 60
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
G T PS + +P S S +P S P
Sbjct: 61 G--ATDRKGGVGMPSRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGP 118
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
S +P S A + + P S P + P
Sbjct: 119 MSL--ESLAPPESTDEGAETESPEPGDEGEPGRSGLELE-PEEPPGWRELVPP 168
Score = 42.0 bits (98), Expect = 0.002
Identities = 20/147 (13%), Positives = 29/147 (19%), Gaps = 4/147 (2%)
Query: 1588 SYSPTSPSYSPTSPSY-SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
+ S + P P + P T PS +
Sbjct: 25 TKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKP--GATDRKGGVGMPSRDRNIGAPG 82
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
+P S S +P S P S S P + A+
Sbjct: 83 QDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMS-LESLAPPESTDEGAETESPEP 141
Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSS 1733
P S P +
Sbjct: 142 GDEGEPGRSGLELEPEEPPGWRELVPP 168
Score = 41.2 bits (96), Expect = 0.004
Identities = 19/122 (15%), Positives = 25/122 (20%), Gaps = 2/122 (1%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
P P + P T PS + +P S S
Sbjct: 42 EPQVPDFRHLKAEVDAEKPG--ATDRKGGVGMPSRDRNIGAPGQDTPGVSLHPLSLDSPD 99
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
+P S P S S + + SP S P
Sbjct: 100 REPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEP 159
Query: 1668 PT 1669
P
Sbjct: 160 PG 161
Score = 40.1 bits (93), Expect = 0.008
Identities = 19/139 (13%), Positives = 27/139 (19%), Gaps = 3/139 (2%)
Query: 1539 TYSPSSPGYSPTSPAY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
T S P P + P T PS +
Sbjct: 25 TKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPG--ATDRKGGVGMPSRDRNIGAPG 82
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
+P S + +P S P S S + + SP
Sbjct: 83 QDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPG 142
Query: 1658 SYSPTSPAYSPTSPGYSPT 1676
+ P P
Sbjct: 143 DEGEPGRSGLELEPEEPPG 161
Score = 37.4 bits (86), Expect = 0.043
Identities = 23/155 (14%), Positives = 35/155 (22%), Gaps = 16/155 (10%)
Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
PA + S + ++ P P + P T PS
Sbjct: 21 EPAKTKKGLSSILDAARWNRGEPQ----VPDFRHLKAEVDAEKP--GATDRKGGVGMPSR 74
Query: 1681 SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS--SSYSPTS 1738
+P + S SP P + + SP S S
Sbjct: 75 DRNIGAPGQDTPGVSLHPL--------SLDSPDREPGADAPLELGDSSPQGPMSLESLAP 126
Query: 1739 PSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
P + P + G P+ P
Sbjct: 127 PESTDEGAETESPEPGDEGEPGRSGLELEPEEPPG 161
Score = 37.4 bits (86), Expect = 0.048
Identities = 16/145 (11%), Positives = 35/145 (24%), Gaps = 5/145 (3%)
Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
P + S + ++ P + A P + N
Sbjct: 21 EPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNIGA 80
Query: 1730 TSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTS 1789
+P S + + SSPQ P + S + P +
Sbjct: 81 PGQD----TPGVSLHPLSLDSPDREPGADAPLELGDSSPQ-GPMSLESLAPPESTDEGAE 135
Query: 1790 QYTPQTNRDDSTTKDDKNTKGDKSS 1814
+P+ + + + ++
Sbjct: 136 TESPEPGDEGEPGRSGLELEPEEPP 160
Score = 35.8 bits (82), Expect = 0.16
Identities = 17/129 (13%), Positives = 24/129 (18%), Gaps = 3/129 (2%)
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
P P + P T PS + +P S +
Sbjct: 42 EPQVPDFRHLKAEVDAEKPG--ATDRKGGVGMPSRDRNIGAPGQDTPGVSLHPLSLDSPD 99
Query: 1671 PGYSPTSPSYSPTSPTYSPTSP-SYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
+P S P S S P + + SP P
Sbjct: 100 REPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEP 159
Query: 1730 TSSSYSPTS 1738
Sbjct: 160 PGWRELVPP 168
>2b5l_C Nonstructural protein V; DDB1, SV5-V, beta propeller, propeller
cluster, zinc finger, protein binding/viral protein
complex; 2.85A {Simian virus 5} PDB: 2hye_B*
Length = 222
Score = 41.9 bits (97), Expect = 0.001
Identities = 20/149 (13%), Positives = 33/149 (22%), Gaps = 4/149 (2%)
Query: 1501 SSPGYSPSSPGYSPTSPGYSP---TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 1557
S SS G + PG + + + P A P
Sbjct: 29 SQQVTGTSSLGKNTIPPGVTGLLTNAAEAKIQESTNHQKGSVGGGAKPKKPRPKIAIVPA 88
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1617
P P +P S S + S SY + +
Sbjct: 89 DDKTVPGKPIPNPLLGLDSTPSTQTVLDLSGKTLPSGSYKGVKLAKFGKENLMTRFIEE- 147
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
+P + + + + YS
Sbjct: 148 PRENPIATSSPIDFKRGRDTGGFHRREYS 176
Score = 40.7 bits (94), Expect = 0.002
Identities = 20/150 (13%), Positives = 32/150 (21%), Gaps = 4/150 (2%)
Query: 1493 TSSPGYSPSSPGYSPSSPGYSP---TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
TS SS G + PG + + P P
Sbjct: 28 TSQQVTGTSSLGKNTIPPGVTGLLTNAAEAKIQESTNHQKGSVGGGAKPKKPRPKIAIVP 87
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
P P +P S S + S SY + +
Sbjct: 88 ADDKTVPGKPIPNPLLGLDSTPSTQTVLDLSGKTLPSGSYKGVKLAKFGKENLMTRFIEE 147
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
+P + + + + YS
Sbjct: 148 -PRENPIATSSPIDFKRGRDTGGFHRREYS 176
Score = 38.8 bits (89), Expect = 0.009
Identities = 19/144 (13%), Positives = 32/144 (22%), Gaps = 4/144 (2%)
Query: 1492 PTSSPGYSPSSPGYSP---SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
TSS G + PG + ++ P P+
Sbjct: 34 GTSSLGKNTIPPGVTGLLTNAAEAKIQESTNHQKGSVGGGAKPKKPRPKIAIVPADDKTV 93
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
P P +P S S + S SY + + +P
Sbjct: 94 PGKPIPNPLLGLDSTPSTQTVLDLSGKTLPSGSYKGVKLAKFGKENLMTRFIEE-PRENP 152
Query: 1609 AYSPTSPAYSPTSPAYSPTSPSYS 1632
+ + + YS
Sbjct: 153 IATSSPIDFKRGRDTGGFHRREYS 176
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 41.1 bits (95), Expect = 0.002
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 1/99 (1%)
Query: 1504 GYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSP 1563
G+ P + + S + + SP SP+S + T+ + + P +P
Sbjct: 223 GHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQS-VGSVPFSAP 281
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
T + + S +P S S + + +S S
Sbjct: 282 TERTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSNS 320
Score = 40.7 bits (94), Expect = 0.003
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 1635 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSY 1694
S Y + + + ++ + + P +PT T + S
Sbjct: 234 SLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESV 293
Query: 1695 NPQSAKYSPSLAYSPSSPRLSPASPYSPTS 1724
NP S +P+ + + +PYS S
Sbjct: 294 NPVS---TPASVEYHAGMKSLNKAPYSSNS 320
Score = 36.4 bits (83), Expect = 0.076
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
S + + SP SP + +++ + + P +PT + + + +P S
Sbjct: 240 ERSYQRAVITNRPGSVSPIKSP-TSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVST 298
Query: 1693 SYNPQSAKYSPSLAYSPSSPR 1713
+ + SL +P S
Sbjct: 299 PASVEYHAGMKSLNKAPYSSN 319
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
PDB: 3eb7_A
Length = 589
Score = 41.4 bits (96), Expect = 0.003
Identities = 27/198 (13%), Positives = 48/198 (24%), Gaps = 5/198 (2%)
Query: 1498 YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 1557
Y+ Y + S T + +S ++
Sbjct: 243 YTDPIGAIGAQGSWYDSAPSFNTLESTFIRGKHLFDFITRLSIYTGRSSFSASNYLKKWI 302
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----YSPTSPSYSPTSPAYSPT 1613
S S + +Y TS S + T S ++ TS Y +
Sbjct: 303 GHQISSQPIGGSIQTQTYGTTSGSSVIATQQIGFTGFDVYKTLSTAGVLFAYTSKYYGVS 362
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPAYSPTSPG 1672
+ P + S P + P+Y S + +
Sbjct: 363 KVVFDAIYPDNKYKTTFTYNPGSEGIGAQEKDSEVELPPETLDQPNYEAYSHRLNYVTFI 422
Query: 1673 YSPTSPSYSPTSPTYSPT 1690
+P P +S T + T
Sbjct: 423 RNPDVPVFSWTHRSADRT 440
Score = 39.4 bits (91), Expect = 0.012
Identities = 27/154 (17%), Positives = 45/154 (29%), Gaps = 12/154 (7%)
Query: 1493 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSS-PGYSPTS 1551
T +S S+ S G S + Y TS + + Y S
Sbjct: 287 TGRSSFSASNYLKKWIGHQISSQPIGGSIQTQTYGTTSGSSVIATQQIGFTGFDVYKTLS 346
Query: 1552 PAYSPTSPSYSPTSPS----YSPTSPSYSPTSPSYSPTSPSYSPTS-------PSYSPTS 1600
A + + S + + T+ +Y+P S P +
Sbjct: 347 TAGVLFAYTSKYYGVSKVVFDAIYPDNKYKTTFTYNPGSEGIGAQEKDSEVELPPETLDQ 406
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
P+Y S + + +P P +S T S T
Sbjct: 407 PNYEAYSHRLNYVTFIRNPDVPVFSWTHRSADRT 440
Score = 39.0 bits (90), Expect = 0.015
Identities = 32/214 (14%), Positives = 51/214 (23%), Gaps = 11/214 (5%)
Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
P T Y+ + Y + S T S
Sbjct: 227 MRTYPMETKAQLTREVYTDPIGAIGAQGSWYDSAPSFNTLESTFIRGKHLFDFITRLSIY 286
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
S+S ++ S S + +Y TS S + T
Sbjct: 287 TGRSSFSASNYLKKWIGHQISSQPIGGSIQTQTYGTTSGSSVIATQQIGFTG------FD 340
Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
Y S A + S Y + Y+P + + S
Sbjct: 341 VYKTLSTAGVLFAYTSKYYGVSKVVFDAIYPDNK---YKTTFTYNPGSEGIGAQEKDSEV 397
Query: 1718 S--PYSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
P + PNY S + + +P P +S
Sbjct: 398 ELPPETLDQPNYEAYSHRLNYVTFIRNPDVPVFS 431
Score = 33.3 bits (75), Expect = 0.89
Identities = 23/189 (12%), Positives = 38/189 (20%)
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS 1625
P T Y+ + Y + S T +
Sbjct: 227 MRTYPMETKAQLTREVYTDPIGAIGAQGSWYDSAPSFNTLESTFIRGKHLFDFITRLSIY 286
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
S+S ++ S S + +Y TS + + T T
Sbjct: 287 TGRSSFSASNYLKKWIGHQISSQPIGGSIQTQTYGTTSGSSVIATQQIGFTGFDVYKTLS 346
Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS 1745
T + + Y+P S P +
Sbjct: 347 TAGVLFAYTSKYYGVSKVVFDAIYPDNKYKTTFTYNPGSEGIGAQEKDSEVELPPETLDQ 406
Query: 1746 PTYSPSSPY 1754
P Y S
Sbjct: 407 PNYEAYSHR 415
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase;
HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1
d.93.1.1 d.144.1.7
Length = 535
Score = 41.0 bits (96), Expect = 0.004
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 14/116 (12%)
Query: 1711 SPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY 1770
S + P S + P + + ++ S P+S G + ++P++ +
Sbjct: 2 SNKSKPKDA-SQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEP 60
Query: 1771 SPSAGYSPSAPGYSPSSTSQ-------------YTPQTNRDDSTTKDDKNTKGDKS 1813
G++ S SP Y +T D S K ++ + +
Sbjct: 61 KLFGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNT 116
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 39.4 bits (91), Expect = 0.004
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 885 WIESQT-----LDSL-KMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFD 938
W E Q LD+ K+ + E+ + + +++E WN E ++ K R
Sbjct: 90 WREEQRKRLQELDAASKVMEQEWREKAKKDLEE--WNQRQ--SEQVE--KNKINNRIADK 143
Query: 939 AEVQKLEAD 947
A Q+ +AD
Sbjct: 144 AFYQQPDAD 152
Score = 32.1 bits (72), Expect = 1.1
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 702 IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSE 747
I QA + EPE R E ++ + D A ++ E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQE-----LDAASKVMEQEWRE 114
Score = 30.5 bits (68), Expect = 3.3
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 14/84 (16%)
Query: 1152 LRSVTEATEVW---YDPDPMGTIIEE-DVEFVKSYYEMPDEDIAPEKISPWLLRIELNRE 1207
L E+ W ++E D E ++ A + + W R E
Sbjct: 80 LTQEPESIRKWREEQRKR-----LQELDAASKVMEQEWREK--AKKDLEEWNQRQS---E 129
Query: 1208 MMVDKKLSMAAVAEKINQEFDDDL 1231
+ K++ + Q+ D D+
Sbjct: 130 QVEKNKINNRIADKAFYQQPDADI 153
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.8 bits (89), Expect = 0.004
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 997 EAVDKLQERLKV-VPGEDP-LSVEAQKNATL 1025
+A+ KLQ LK+ P L++ AT+
Sbjct: 20 QALKKLQASLKLYADDSAPALAI----KATM 46
Score = 29.5 bits (65), Expect = 5.9
Identities = 6/13 (46%), Positives = 7/13 (53%), Gaps = 3/13 (23%)
Query: 1694 YNPQSAKYSPSLA 1706
Y SA P+LA
Sbjct: 32 YADDSA---PALA 41
>1w99_A Pesticidial crystal protein CRY4BA; membrane pore, BIO-insecticide,
dipteran specificity, conformational change; 1.75A
{Bacillus thuringiensis serovarisraelensis}
Length = 558
Score = 40.6 bits (94), Expect = 0.005
Identities = 31/175 (17%), Positives = 56/175 (32%), Gaps = 7/175 (4%)
Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
T+ SP+S S + + + ++ T+ Y S +S T+ S
Sbjct: 210 TALVESPSSKSIAALEAALTRDVHLFTWLKRVDFWTNTIYQ-DLRFLSANKIGFSYTNSS 268
Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS---PTSPSY 1694
S Y + S + S Y + +SPS T + T SY
Sbjct: 269 AMQESGIYGSSGFG-SNLTHQIQLNSNVYKTSITDT--SSPSNRVTKMDFYKIDGTLASY 325
Query: 1695 NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
N L + + +P PT +Y+ S Y+ + +++
Sbjct: 326 NSNITPTPEGLRTTFFGFSTNENTPNQPTVNDYTHILSYIKTDVIDYNSNRVSFA 380
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 38.4 bits (89), Expect = 0.022
Identities = 19/110 (17%), Positives = 31/110 (28%), Gaps = 10/110 (9%)
Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
+ + T P S + + + + + + + Y+P
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397
Query: 1732 SSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAP 1781
Y P P Y G P P PQ +P G P+AP
Sbjct: 398 QGYPPQGY----------PPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAP 437
Score = 36.4 bits (84), Expect = 0.088
Identities = 15/101 (14%), Positives = 22/101 (21%), Gaps = 4/101 (3%)
Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP--GYSPTSP 1678
+ T +S + + + P GY+P
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQ 398
Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
Y P P P P P PA+P
Sbjct: 399 GYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQ--GAPPAAP 437
Score = 32.6 bits (74), Expect = 1.4
Identities = 13/103 (12%), Positives = 19/103 (18%), Gaps = 4/103 (3%)
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
+ + S +P+ + P P
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPP-- 396
Query: 1650 PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
P P P GY P P P +P
Sbjct: 397 PQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQG--APPAAP 437
Score = 32.2 bits (73), Expect = 1.9
Identities = 12/102 (11%), Positives = 18/102 (17%)
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
+ + S +P+ + P P
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQ 398
Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
P GY P P P+ PQ
Sbjct: 399 GYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQG 440
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 38.1 bits (88), Expect = 0.027
Identities = 26/180 (14%), Positives = 48/180 (26%), Gaps = 10/180 (5%)
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
+ T Y + + +P PS + +
Sbjct: 288 FDWTILKYQQSQIASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAP 347
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
P S + + S + P + S +S + +SS + P
Sbjct: 348 PPIASVGTLAKQKAPVGNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTSEP 407
Query: 1744 SSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTK 1803
S + +SP A SSP S SS+++++ +S K
Sbjct: 408 SRTRATDASP-GAFRRTSGPQKSSPVNSAEP---------KHSSSARHSSNVKNYESALK 457
Score = 38.1 bits (88), Expect = 0.027
Identities = 32/174 (18%), Positives = 53/174 (30%), Gaps = 4/174 (2%)
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
+ T Y + A +P PS P+ S + +S
Sbjct: 288 FDWTILKYQQSQIASAPPRAVGHGAGPS-GLAPPALQNDRQSGVDEGRTSGWSSMDRRRA 346
Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPN-YS 1728
P + +P + S S P + + S SS R + +S +
Sbjct: 347 PPPIASVGTLAKQKAPVGNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTSE 406
Query: 1729 PTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPG 1782
P+ + + SP + SSP N P +S S+ S Y + G
Sbjct: 407 PSRTRATDASPGAFRRTSGPQKSSPVN--SAEPKHSSSARHSSNVKNYESALKG 458
Score = 31.1 bits (70), Expect = 3.7
Identities = 19/123 (15%), Positives = 28/123 (22%), Gaps = 2/123 (1%)
Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPG 1504
SG D +P + S S+ S
Sbjct: 329 GVDEGRTSGWSSMDRRRAPPPIASVGTLAKQKAPVGNDASFSKEPVISASNFLGRSSGSS 388
Query: 1505 YSPSSPGYSPTSPG--YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS 1562
P+ P P+ + SPG + SSP S S S +
Sbjct: 389 RRPAVSSSRDVMPIDTSEPSRTRATDASPGAFRRTSGPQKSSPVNSAEPKHSSSARHSSN 448
Query: 1563 PTS 1565
+
Sbjct: 449 VKN 451
>1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus
thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Length = 589
Score = 38.3 bits (88), Expect = 0.028
Identities = 33/223 (14%), Positives = 54/223 (24%), Gaps = 16/223 (7%)
Query: 1524 PGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY-----SPTSPSYSPTSPSYSPT 1578
T ++ T Y PT S P Y ++
Sbjct: 226 IRLYSKGVKTELTRDIFTDPI-FSLNTLQEYGPTFLSIENSIRKPHLFDYLQGIEFHTRL 284
Query: 1579 SPSYSPTS--PSYSPTSPSYSPT-SPSYSPTSPAY-SPTSPAYSPTSPAYSPTSPSYSPT 1634
P Y +S P+ S + TSP Y ++ S + + T
Sbjct: 285 QPGYFGKDSFNYWSGNYVETRPSIGSSKTITSPFYGDKSTEPVQKLSFDGQKVYRTIANT 344
Query: 1635 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSY 1694
+ P Y + + + S + + S P +
Sbjct: 345 DVAAWPNGKVYLGVTKVDFSQYDDQKNETSTQTYDSKRNNGHVSAQD--SIDQLPPETTD 402
Query: 1695 NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPT 1737
P YS L Y+ T P ++ T S
Sbjct: 403 EPLEKAYSHQLNYA----ECFLMQDRRGTIPFFTWTHRSVDFF 441
Score = 31.8 bits (71), Expect = 2.4
Identities = 32/224 (14%), Positives = 59/224 (26%), Gaps = 20/224 (8%)
Query: 1455 PYHDGMMSPGYLFSPNLR--LSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGY 1512
P++D + + + R + + + G F + P Y +
Sbjct: 222 PFYDIRLYSKGVKTELTRDIFTDPIFSLNTLQEYGPTFLSIENSIRKPHLFDYLQGIEFH 281
Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY-SPTSPSYSPTSPSYSPT 1571
+ PGY ++ S Y T P+ S + TSP Y ++ S
Sbjct: 282 TRLQPGYFGK-DSFNYWSGNYVETRPSIGSSK---TITSPFYGDKSTEPVQKLSFDGQKV 337
Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS--P 1629
+ + T + P Y + + + S + A P
Sbjct: 338 YRTIANTDVAAWPNGKVYLGVTKVDFSQYDDQKNETSTQTYDSKRNNGHVSAQDSIDQLP 397
Query: 1630 SYSPTSPSYSPTS-----------PSYSPTSPSYSPTSPSYSPT 1662
+ P S T P ++ T S
Sbjct: 398 PETTDEPLEKAYSHQLNYAECFLMQDRRGTIPFFTWTHRSVDFF 441
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 37.5 bits (87), Expect = 0.049
Identities = 19/140 (13%), Positives = 42/140 (30%), Gaps = 1/140 (0%)
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
+P P+ + + ++ + T+ + + + S S++ + T+
Sbjct: 2 APGKPTIAWGNTKFAIVEVDQAATAYNNLVKVKNAADVSVSWNLWNGDTGTTAKVLLNGK 61
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
A+S S S T+ Y + + S + + G S +P
Sbjct: 62 EAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEIVVADTDG-SHLAPLKE 120
Query: 1682 PTSPTYSPTSPSYNPQSAKY 1701
P P + Y
Sbjct: 121 PLLEKNKPYKQNSGKVVGSY 140
Score = 34.8 bits (80), Expect = 0.33
Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 1/134 (0%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
+P P + + ++ + T+ + + + S S++ + T+
Sbjct: 2 APGKPTIAWGNTKFAIVEVDQAATAYNNLVKVKNAADVSVSWNLWNGDTGTTAKVLLNGK 61
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPAY 1666
A+S S S T+ Y + + S T + T S+
Sbjct: 62 EAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEIVVADTDGSHLAPLKEP 121
Query: 1667 SPTSPGYSPTSPSY 1680
+
Sbjct: 122 LLEKNKPYKQNSGK 135
Score = 34.8 bits (80), Expect = 0.33
Identities = 15/134 (11%), Positives = 35/134 (26%), Gaps = 1/134 (0%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
+P P + + ++ + T+ + + S S++ + T+
Sbjct: 2 APGKPTIAWGNTKFAIVEVDQAATAYNNLVKVKNAADVSVSWNLWNGDTGTTAKVLLNGK 61
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYSPTSPSYSPTSPSY 1645
++S S S T+ Y + A T + T S+
Sbjct: 62 EAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEIVVADTDGSHLAPLKEP 121
Query: 1646 SPTSPSYSPTSPSY 1659
+
Sbjct: 122 LLEKNKPYKQNSGK 135
Score = 33.6 bits (77), Expect = 0.65
Identities = 15/134 (11%), Positives = 38/134 (28%), Gaps = 1/134 (0%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
+P P+ + + ++ + T+ + + + S S++ + T+
Sbjct: 2 APGKPTIAWGNTKFAIVEVDQAATAYNNLVKVKNAADVSVSWNLWNGDTGTTAKVLLNGK 61
Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPAYSPTSPGY 1673
A+S S S T+ Y + + S T + T ++
Sbjct: 62 EAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEIVVADTDGSHLAPLKEP 121
Query: 1674 SPTSPSYSPTSPTY 1687
+
Sbjct: 122 LLEKNKPYKQNSGK 135
Score = 33.6 bits (77), Expect = 0.68
Identities = 17/141 (12%), Positives = 44/141 (31%), Gaps = 3/141 (2%)
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
+P P + + ++ + T+ + + + S S++ + T+
Sbjct: 2 APGKPTIAWGNTKFAIVEVDQAATAYNNLVKVKNAADVSVSWNLWNGDTGTTAKVLLNGK 61
Query: 1678 PSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPT 1737
++S S S T+ + +Y +A + + + + S +P
Sbjct: 62 EAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEIVVAD---TDGSHLAPL 118
Query: 1738 SPSYSPSSPTYSPSSPYNAGG 1758
+ Y +S G
Sbjct: 119 KEPLLEKNKPYKQNSGKVVGS 139
Score = 32.5 bits (74), Expect = 1.5
Identities = 13/130 (10%), Positives = 36/130 (27%), Gaps = 1/130 (0%)
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
+P P+ + + ++ + T+ + + S +++ + T+
Sbjct: 2 APGKPTIAWGNTKFAIVEVDQAATAYNNLVKVKNAADVSVSWNLWNGDTGTTAKVLLNGK 61
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPGYSPTSPSYSPTSPTYSPTSPSY 1694
++S S S T+ Y + T + T ++
Sbjct: 62 EAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEIVVADTDGSHLAPLKEP 121
Query: 1695 NPQSAKYSPS 1704
+ K
Sbjct: 122 LLEKNKPYKQ 131
Score = 31.3 bits (71), Expect = 3.5
Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 4/138 (2%)
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
+P P+ + + ++ + T+ + + S S++ + T+
Sbjct: 2 APGKPTIAWGNTKFAIVEVDQAATAYNNLVKVKNAADVSVSWNLWNGDTGTTAKVLLNGK 61
Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSP 1716
++S S S T+ Y + S +A + S L+P
Sbjct: 62 EAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADG---CTASDATEIVVADTDGSH-LAP 117
Query: 1717 ASPYSPTSPNYSPTSSSY 1734
+S
Sbjct: 118 LKEPLLEKNKPYKQNSGK 135
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 36.4 bits (84), Expect = 0.083
Identities = 38/246 (15%), Positives = 63/246 (25%), Gaps = 43/246 (17%)
Query: 1545 PGYSPTSPAYSPTSPSYSPTSPSYSPTSPS----------YSPTSPSY---SPTSPSYSP 1591
G + + S PS P +PS TS Y P + S S
Sbjct: 119 KGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH 178
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPT---SPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
T P+ +S YS +S P+S + T + + P++ + S P
Sbjct: 179 TFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPP 238
Query: 1649 SPSYSPTS-PSYSPTSPAYSPTSP------------GYSPTSPS-----YSPTSPTYSPT 1690
P+ PS P T S P Y ++
Sbjct: 239 CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK 298
Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPAS---------PYSPTSPNYSPTSSSYSPTSPSY 1741
+ Q ++ + P + + + P P
Sbjct: 299 TKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQV 358
Query: 1742 SPSSPT 1747
P+
Sbjct: 359 YTLPPS 364
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 36.7 bits (85), Expect = 0.091
Identities = 15/64 (23%), Positives = 26/64 (40%)
Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSP 1722
+ + SP + S + + + PS+NPQ A P Y P + + P +
Sbjct: 2 TTSESPDAYTESFGAHTIVKPAGPPRVGQPSWNPQRASSMPVNRYRPFAEEVEPIRLRNR 61
Query: 1723 TSPN 1726
T P+
Sbjct: 62 TWPD 65
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 36.5 bits (84), Expect = 0.096
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 1288 LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
L+ + +EDV R + L I LG+E R LL L I
Sbjct: 15 LIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIY 59
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 35.6 bits (82), Expect = 0.17
Identities = 36/192 (18%), Positives = 59/192 (30%), Gaps = 29/192 (15%)
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPS----------YSPTSPAYSPTSPAYSPTSPAYS 1625
T +P+ + PS + + P + + + +
Sbjct: 104 KVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVE- 162
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPAYSPTSPGYSPTSPSYSPTS 1684
T+ ++ Y + SY +P + SYS + S +PT S S
Sbjct: 163 -TTKPSKQSNNKY--AASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKG 219
Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP----NYSPTSSSYSPTSPS 1740
P+ P +PS S + +L Y P N +S T P+
Sbjct: 220 PSVFPLAPSSKSTSGGTA-ALGCL--------VKDYFPQPVTVSWNSGALTSGVH-TFPA 269
Query: 1741 YSPSSPTYSPSS 1752
SS YS SS
Sbjct: 270 VLQSSGLYSLSS 281
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 34.9 bits (79), Expect = 0.24
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
+P + T S PT SPS QS +S S + PT+P+ S
Sbjct: 3 TPLSAITVRSM-EGPPTVQQQSPSVIRQSPTQRR-----KTSTTSSTSRAPPPTNPDASS 56
Query: 1730 TSSSYSPTSPSYSPS 1744
+SSS++ + + S
Sbjct: 57 SSSSFAVPTIHFKES 71
>3zue_A VP1, capsid structural protein VP60; CAGE design, molecular switch,
protein engineering, structural polymorphism; 10.30A
{Rabbit hemorrhagic disease virus}
Length = 579
Score = 34.9 bits (79), Expect = 0.31
Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 8/228 (3%)
Query: 1497 GYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP 1556
G+S G + + + + G + +P + G+ S P
Sbjct: 286 GWSSPRFADIDHRRGSASYPGNNATNVLQFWYANAGSAVDNPISQVAPDGFPDMSF--VP 343
Query: 1557 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
+ P + + S + T +Y + +P + + + + +
Sbjct: 344 FNGPGIPAAGWVGFGAIWNSNSGAPNVTTVQAYELGFATGAPGNLQPTTNTSGAQTVAKS 403
Query: 1617 YSPTSPAYS--PTSPSYSPTSPSYSPTSPSYSPTSPS----YSPTSPSYSPTSPAYSPTS 1670
+ P + +P + + + T +P +P+ +P
Sbjct: 404 IYAVVTGTAQNPAGLFVMASGVISTPNANAITYTPQPDRIVTTPGTPAAAPVGKNTPIMF 463
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
+ + T+ + S T Q + L+ + S L P
Sbjct: 464 ASVVRRTGDVNATAGSASGTQYGTGSQPLPVTIGLSLNNYSSSLMPGQ 511
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A
{Homo sapiens}
Length = 211
Score = 34.0 bits (78), Expect = 0.33
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 1506 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1565
+P P + G S SP T+ S PT S S S T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1566 PS 1567
S
Sbjct: 209 TS 210
Score = 33.6 bits (77), Expect = 0.35
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
+P PS + S SP + + A PT S S S T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1636 PS 1637
S
Sbjct: 209 TS 210
Score = 33.6 bits (77), Expect = 0.35
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
+P PS + S SP + + A PT + S S S T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1643 PS 1644
S
Sbjct: 209 TS 210
Score = 33.2 bits (76), Expect = 0.52
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
+P PS + S SP + + PT + S S + T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1692 PS 1693
S
Sbjct: 209 TS 210
Score = 32.8 bits (75), Expect = 0.62
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
+P P + S SP ++ + + PT + S S S T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1601 PS 1602
S
Sbjct: 209 TS 210
Score = 32.8 bits (75), Expect = 0.67
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
+P P+ + G S SP ++ + + PT + S S S T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1594 PS 1595
S
Sbjct: 209 TS 210
Score = 32.8 bits (75), Expect = 0.67
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
+P P+ + S SP ++ + + PT + S S S T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1608 PA 1609
+
Sbjct: 209 TS 210
Score = 32.8 bits (75), Expect = 0.68
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 1520 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1579
+P P + G S SP + + + PT + S S S T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1580 PS 1581
S
Sbjct: 209 TS 210
Score = 32.8 bits (75), Expect = 0.70
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
+P PS + S SP + + + PT + S S S T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1650 PS 1651
S
Sbjct: 209 TS 210
Score = 32.4 bits (74), Expect = 1.0
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
+P PS + S SP ++ + A PT S S + T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1629 PS 1630
S
Sbjct: 209 TS 210
Score = 32.0 bits (73), Expect = 1.1
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
+P PS + S SP ++ + A PT S S S T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1685 PT 1686
+
Sbjct: 209 TS 210
Score = 32.0 bits (73), Expect = 1.1
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
+P PS + S SP ++ + + PT + S S S T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1657 PS 1658
S
Sbjct: 209 TS 210
Score = 32.0 bits (73), Expect = 1.4
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
+P PS + S SP ++ + + PT + S S + T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1615 PA 1616
+
Sbjct: 209 TS 210
Score = 31.3 bits (71), Expect = 2.1
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
+P PS + S SP ++ + + PT S S + T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1622 PA 1623
+
Sbjct: 209 TS 210
Score = 30.9 bits (70), Expect = 2.8
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
+P P+ + S SP ++ + + PT + S S S T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1664 PA 1665
+
Sbjct: 209 TS 210
Score = 29.7 bits (67), Expect = 6.0
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
+P P+ + S SP ++ + + PT + S S + T+
Sbjct: 150 NPQPPSCQGEAAG-SSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVATA 208
Query: 1671 P 1671
Sbjct: 209 T 209
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 34.1 bits (78), Expect = 0.38
Identities = 30/145 (20%), Positives = 41/145 (28%), Gaps = 16/145 (11%)
Query: 1513 SPTSPGYSPTSPGYSPTSP----------GYSPTSPTYSPSSPGYSP---TSPAYSPTSP 1559
S P P +P TS Y P T S +S + T PA +S
Sbjct: 117 STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSG 176
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
YS +S T PS S + +Y + P + P S
Sbjct: 177 LYSLSS---VVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSG 233
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPS 1644
P P PS + +
Sbjct: 234 GGSGGQPREPQVYTLPPSRDELTKN 258
>1r5s_A GAP junction alpha-1 protein; CX43CT, membrane protein; NMR {Rattus
norvegicus} SCOP: f.50.1.1
Length = 132
Score = 32.1 bits (71), Expect = 0.71
Identities = 22/128 (17%), Positives = 40/128 (31%)
Query: 1678 PSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPT 1737
P SP+ SP +N S+ +P SP +L + + NY+ +S +
Sbjct: 2 PLGSPSKDCGSPKYAYFNGCSSPTAPLSPMSPPGYKLVTGDRNNSSCRNYNKQASEQNWA 61
Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNR 1797
+ S + + S+ N+ D+ + A P +
Sbjct: 62 NYSAEQNRMGQAGSTISNSHAQPFDFPDDNQNAKKVAAGHELQPLAIVDQRPSSRASSRA 121
Query: 1798 DDSTTKDD 1805
DD
Sbjct: 122 SSRPRPDD 129
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 32.9 bits (74), Expect = 0.98
Identities = 24/135 (17%), Positives = 39/135 (28%), Gaps = 8/135 (5%)
Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
P + + T + S S S+ +P S + + +
Sbjct: 245 PGGNEITRGGSTSYGTGSETESPRNPSSAGSWNSGSS--GPGSTGNRNPGSSGTGGTATW 302
Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
P SS T S SS T + G NP + + G S +S
Sbjct: 303 KPGSSGPGSTGSWNSGSSGTG------STGNQNPGSPRPGSTGTWNPGSSERGSAGHWTS 356
Query: 1788 TSQYTPQTNRDDSTT 1802
S + T + S +
Sbjct: 357 ESSVSGSTGQWHSES 371
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3
Length = 422
Score = 32.8 bits (75), Expect = 1.0
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP-SYS 1681
AY +S + T+ + + YS T+ + + + A+ T+ PT P S+
Sbjct: 353 AYGSGYCLKDSSSHTSYTTTSTVTAAPSGYSATTMA-ADLATAFGLTASIPIPTIPTSFY 411
Query: 1682 PTSPTYSP 1689
P YS
Sbjct: 412 PGLTPYSA 419
Score = 32.1 bits (73), Expect = 1.8
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSP 1584
+S T+ T + + GYS T+ A + + ++ T+ PT P S+ P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMA-ADLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 32.1 bits (73), Expect = 2.0
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP-SYSPTSPSYSP 1640
+S + T+ + + YS T+ A + + A+ T+ PT P S+ P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMA-ADLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 32.1 bits (73), Expect = 2.1
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
+S + T+ + + YS T+ A + + + T+ PT P S+ P
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMA-ADLATAFGLTASIPIPTIP------TSFYPGL 414
Query: 1699 AKYSP 1703
YS
Sbjct: 415 TPYSA 419
Score = 31.3 bits (71), Expect = 3.0
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA-YS 1611
AY +S + T+ + + YS T+ + + + ++ T+ PT P +
Sbjct: 353 AYGSGYCLKDSSSHTSYTTTSTVTAAPSGYSATTMA-ADLATAFGLTASIPIPTIPTSFY 411
Query: 1612 PTSPAYSP 1619
P YS
Sbjct: 412 PGLTPYSA 419
Score = 31.3 bits (71), Expect = 3.0
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
+S + T+ + + YS T+ A + + A+ T+ PT P S+ P
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMA-ADLATAFGLTASIPIPTIP------TSFYPGL 414
Query: 1650 PSYSP 1654
YS
Sbjct: 415 TPYSA 419
Score = 31.3 bits (71), Expect = 3.6
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 1493 TSSPGYSPSSPGYSPSSPGYSPTSPGYS-PTSPGYSPTSPGYSPTSPTYSPSS---PGYS 1548
+ SS ++ + GYS T T+ G + + P + + PG +
Sbjct: 356 SGYCLKDSSSHTSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTSFYPGLT 415
Query: 1549 PTSP 1552
P S
Sbjct: 416 PYSA 419
Score = 31.3 bits (71), Expect = 3.7
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP-SYSPTSPSYSP 1570
+S T+ + GYS T+ + + T+ PT P S+ P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAADLA-TAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 30.9 bits (70), Expect = 3.9
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 1609 AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
AY +S T+ + + YS T+ + + + ++ T+ PT P
Sbjct: 353 AYGSGYCLKDSSSHTSYTTTSTVTAAPSGYSATTMA-ADLATAFGLTASIPIPTIPT--S 409
Query: 1669 TSPGYSPTSP 1678
PG +P S
Sbjct: 410 FYPGLTPYSA 419
Score = 30.9 bits (70), Expect = 4.2
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSP 1601
S +S S T+ S +PS + + + ++ T+ PT P S+ P
Sbjct: 356 SGYCLKDSSSHTSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTSFYPGLT 415
Query: 1602 SYSP 1605
YS
Sbjct: 416 PYSA 419
Score = 30.5 bits (69), Expect = 5.3
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA-YSPTSPAYSP 1626
+S + T+ + + YS T+ + + + ++ T+ PT P + P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMA-ADLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 30.5 bits (69), Expect = 5.9
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
+S + T+ + YS T+ A + + ++ T+ PT P S+ P
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMA-ADLATAFGLTASIPIPTIP------TSFYPGL 414
Query: 1657 PSYSP 1661
YS
Sbjct: 415 TPYSA 419
Score = 30.5 bits (69), Expect = 6.0
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT-YSPSSPGYSP 1549
+S Y+ +S + S + T + + T+ PT PT + P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA--DLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 29.8 bits (67), Expect = 9.7
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSP 1598
S S Y+ TS + S + T + + ++ T+ PT P S+ P YS
Sbjct: 363 SSSHTSYTTTSTVTAAPSGYSATTMAA--DLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
>3m1c_A GH, envelope glycoprotein H; glycoprotein H, GH/GL, envelope protein,
HER simplex virus, disulfide bond, HOST cell MEMB HOST
endosome; HET: NAG XYL; 3.00A {Human herpesvirus 2}
Length = 762
Score = 33.0 bits (74), Expect = 1.0
Identities = 35/233 (15%), Positives = 62/233 (26%), Gaps = 14/233 (6%)
Query: 1520 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1579
P PG P + S P P P + S++P + + +
Sbjct: 52 FPRDPGQLLYIPKTYLLGRPRNASLPELPEAGPTSRPPAEVTQLKGLSHNPGASALLRSR 111
Query: 1580 P--SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS-PTSP 1636
+++ T P + P +P P PA +P P+ + +
Sbjct: 112 AWVTFAAAPDREGLTFPRGDDGATERHPDGRRNAP-----PPGPPAGTPRHPTTNLSIAH 166
Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
++ + + +P Y S + P T + Y
Sbjct: 167 LHNASVTWLAARGLLRTPGRYVYLSPSASTWPVG--VWTTGGLAFGCD--AALVRARYGK 222
Query: 1697 QSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
S+ SP P P T + +P P+ P Y
Sbjct: 223 GFMGLVISMRDSP--PAEIIVVPADKTLARVGNPTDENAPAVLPGPPAGPRYR 273
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex;
3.15A {Homo sapiens} SCOP: a.4.5.21
Length = 157
Score = 31.7 bits (71), Expect = 1.1
Identities = 8/65 (12%), Positives = 15/65 (23%)
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
+ + + + S +S P P +S +
Sbjct: 85 FVSYPEILNMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYIH 144
Query: 1607 SPAYS 1611
S YS
Sbjct: 145 SGLYS 149
Score = 30.5 bits (68), Expect = 2.7
Identities = 8/65 (12%), Positives = 14/65 (21%)
Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
+ + + + S +S P P +S
Sbjct: 85 FVSYPEILNMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYIH 144
Query: 1677 SPSYS 1681
S YS
Sbjct: 145 SGLYS 149
Score = 30.1 bits (67), Expect = 3.6
Identities = 9/65 (13%), Positives = 16/65 (24%)
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
+ + + + S +S P PG +S +
Sbjct: 85 FVSYPEILNMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYIH 144
Query: 1684 SPTYS 1688
S YS
Sbjct: 145 SGLYS 149
Score = 30.1 bits (67), Expect = 3.7
Identities = 8/65 (12%), Positives = 14/65 (21%)
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
+ + + + S +S P P +S
Sbjct: 85 FVSYPEILNMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYIH 144
Query: 1614 SPAYS 1618
S YS
Sbjct: 145 SGLYS 149
Score = 30.1 bits (67), Expect = 3.7
Identities = 8/65 (12%), Positives = 14/65 (21%)
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
+ + + S +S P P +S +
Sbjct: 85 FVSYPEILNMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYIH 144
Query: 1663 SPAYS 1667
S YS
Sbjct: 145 SGLYS 149
Score = 30.1 bits (67), Expect = 3.9
Identities = 8/52 (15%), Positives = 10/52 (19%)
Query: 1695 NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
P+ P S +S P P SS
Sbjct: 88 YPEILNMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSR 139
Score = 30.1 bits (67), Expect = 4.2
Identities = 8/65 (12%), Positives = 14/65 (21%)
Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
+ + + + S +S P P +S
Sbjct: 85 FVSYPEILNMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYIH 144
Query: 1621 SPAYS 1625
S YS
Sbjct: 145 SGLYS 149
Score = 29.4 bits (65), Expect = 7.5
Identities = 8/65 (12%), Positives = 14/65 (21%)
Query: 1540 YSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1599
+ + + S +S P P +S +
Sbjct: 85 FVSYPEILNMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYIH 144
Query: 1600 SPSYS 1604
S YS
Sbjct: 145 SGLYS 149
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural
genomics, the center for structural genomics of I
diseases, csgid; 1.87A {Listeria monocytogenes}
Length = 249
Score = 32.5 bits (74), Expect = 1.1
Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 8/134 (5%)
Query: 909 MDEENWNPNYMLQEYIDDLKT----IKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
+D+ ++ N L L I+ + D ++ + + E T D S
Sbjct: 70 LDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSN 129
Query: 965 LPVNLKRLIWNAQKTFKVDPRRPSDMHPME---VVEAVDKLQERLKVVPGEDPLSVEAQK 1021
R +W K + + ++M E + E+ D L V P S EAQ
Sbjct: 130 PYEEEARKLW-GDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQL 188
Query: 1022 NATLFFNILLRSTF 1035
FF+ L +
Sbjct: 189 EIDHFFHYLNDTHG 202
>1ciy_A Cryia(A); toxin, ICP; 2.25A {Bacillus thuringiensis} SCOP: b.18.1.3
b.77.2.1 f.1.3.1
Length = 590
Score = 32.9 bits (74), Expect = 1.1
Identities = 23/214 (10%), Positives = 49/214 (22%), Gaps = 19/214 (8%)
Query: 1419 YLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTD 1478
+ QL + S + + +L ++ TD
Sbjct: 221 NYDSRRYPIRTVSQLTREIYTNPVLENFDGSFRGMAQRIEQNIRQPHLMDILNSITIYTD 280
Query: 1479 AQFSPYVGG---MAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP-------TSPGYSP 1528
+ SP G + P + + P + +SP Y
Sbjct: 281 VHRGFNYWSGHQITASPVGFSGPEFAFPLFGNAGNAAPPVLVSLTGLGIFRTLSSPLYRR 340
Query: 1529 TSPGYSPTSPTYS--PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
G P + + + P++ + P + P + S
Sbjct: 341 IILGSGPNNQELFVLDGTEFSFASLTTNLPSTIYRQRGTVDSLDVIPPQDNSVPPRAGFS 400
Query: 1587 -------PSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
Y+ +P++S +
Sbjct: 401 HRLSHVTMLSQAAGAVYTLRAPTFSWQHRSAEFN 434
Score = 31.3 bits (70), Expect = 3.7
Identities = 16/141 (11%), Positives = 35/141 (24%), Gaps = 1/141 (0%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
SP P + +P + SP S +
Sbjct: 295 ASPVGFSGPEFAFPLFGNAGNAAPPVLVSLTGLGIFRTLSSPLYRRIILGSGPNNQELFV 354
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
T +++ + P++ + P + P + S S +
Sbjct: 355 LDGTEFSFASLTT-NLPSTIYRQRGTVDSLDVIPPQDNSVPPRAGFSHRLSHVTMLSQAA 413
Query: 1670 SPGYSPTSPSYSPTSPTYSPT 1690
Y+ +P++S +
Sbjct: 414 GAVYTLRAPTFSWQHRSAEFN 434
>3lat_A Bifunctional autolysin; amidase, ATLE, peptidoglycan hydrolase, cell
WALL biogenesis/degradation, multifunctional enzyme,
secreted; 1.70A {Staphylococcus epidermidis}
Length = 213
Score = 31.7 bits (71), Expect = 1.6
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 1717 ASPYSPTSPNYSPTSSSY--------SPTSPSYSPSSPTYSPSSPYNAGGGNPDY 1763
+S + + P Y+P +S + +P +Y P Y G G P+
Sbjct: 2 SSQKTSSLPKYTPKVNSSINNYIRKKNMKAPRIEEDYTSYFPKYGYRNGVGRPEG 56
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 32.2 bits (72), Expect = 1.8
Identities = 13/158 (8%), Positives = 27/158 (17%), Gaps = 29/158 (18%)
Query: 1507 PSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSP 1566
P + + P S S ++ + S P + S ++
Sbjct: 651 LKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLH 710
Query: 1567 --SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------------------- 1603
+ P + + S
Sbjct: 711 NVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQD 770
Query: 1604 ------SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
S + + T P T +
Sbjct: 771 TPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNV 808
>1th1_C APC protein, adenomatous polyposis coli protein; protein-protein
complex, cell adhesion/antitumor protein complex; HET:
TPO SEP; 2.50A {Homo sapiens}
Length = 179
Score = 31.2 bits (69), Expect = 2.2
Identities = 28/165 (16%), Positives = 45/165 (27%), Gaps = 6/165 (3%)
Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
Y +P S S S + S + P S SP+ SP
Sbjct: 9 KSPPEHYVQETPLMFSRCTSVSSLDSFESRSIASSVQSEPCSGMVSGIISPSDLPDSPG- 67
Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS 1688
PS S T P T+ + + +PT+ + + +
Sbjct: 68 ---QTMPPSRSKTPPPPPQTAQTKREVPKNKAPTAEKRESGPKQAAVNAAVQRVQVLPDA 124
Query: 1689 PTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSS 1733
T + +S S + S S+ LS P+
Sbjct: 125 DTLLHFATESTPDGFSCSSSLSA--LSLDEPFIQKDVELRIMPPV 167
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 31.6 bits (71), Expect = 2.4
Identities = 6/45 (13%), Positives = 8/45 (17%)
Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1577
+ S+ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 31.6 bits (71), Expect = 2.7
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 31.6 bits (71), Expect = 2.7
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 31.2 bits (70), Expect = 3.1
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1612
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 31.2 bits (70), Expect = 3.1
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 31.2 bits (70), Expect = 3.7
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1652 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 31.2 bits (70), Expect = 3.8
Identities = 8/55 (14%), Positives = 9/55 (16%), Gaps = 3/55 (5%)
Query: 1488 MAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSP 1542
MA S+ P SP Y S
Sbjct: 1 MAHHHHHHVDDDDKMY---QSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 30.8 bits (69), Expect = 4.2
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1540 YSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1584
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 30.8 bits (69), Expect = 4.5
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP 1675
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 30.8 bits (69), Expect = 4.7
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 30.0 bits (67), Expect = 7.4
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 30.0 bits (67), Expect = 7.4
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 30.0 bits (67), Expect = 7.4
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 30.0 bits (67), Expect = 7.9
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 30.0 bits (67), Expect = 8.0
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSP 1689
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 30.0 bits (67), Expect = 8.2
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 29.7 bits (66), Expect = 9.6
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
+ ++ P SP Y S
Sbjct: 8 HVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 29.7 bits (66), Expect = 10.0
Identities = 7/56 (12%), Positives = 13/56 (23%), Gaps = 5/56 (8%)
Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
+ + P+SP Y + P PS++
Sbjct: 2 AHHHHHHVDDDDKMYQ-----SAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 31.5 bits (72), Expect = 2.7
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 11/131 (8%)
Query: 1673 YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
Y P S S PTSP P +P+++ S + Y ++ SP P + +
Sbjct: 298 YLPNSVSKLPTSPP--PQTPAWDDFDR--SKNFTYRITAAMGSPKPPVKFNRRIFLLNTQ 353
Query: 1733 SYSPTSPSYSPSSPTY-SPSSP------YNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSP 1785
+ ++ + + P +P YN P +P +
Sbjct: 354 NVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTR 413
Query: 1786 SSTSQYTPQTN 1796
Y +
Sbjct: 414 IGNGVYQFKIG 424
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex;
2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Length = 171
Score = 30.6 bits (68), Expect = 2.7
Identities = 7/59 (11%), Positives = 13/59 (22%)
Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPY 1720
+ P P Y P + ++ + P P + A
Sbjct: 2 KHHHHHPMVPSYDSFDSEDYPAALPNHKPKGTFKDYVRDRADLNKDKPVIPAAALAGYT 60
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 30.4 bits (68), Expect = 3.1
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 1509 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY 1568
+ P++ + + S SPS+ S S S S S T
Sbjct: 106 TKIGFPSTTPAKAKANAVRRVMAT-TSASLKRSPSASSLSSMSSVASSVSSRPSRTGLLT 164
Query: 1569 SPTSPS 1574
+ PS
Sbjct: 165 ETSGPS 170
Score = 30.1 bits (67), Expect = 4.4
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYS 1708
PS +P + + TS SPS S S S S + S +
Sbjct: 110 FPSTTPAKAKANAVRRVMATTSASLKR-SPSASSLSSMSSVASSVSSRPSRTGLLTETSG 168
Query: 1709 PSS 1711
PSS
Sbjct: 169 PSS 171
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 30.9 bits (71), Expect = 3.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 752 KAMVTAGSKGSFINISQMTACVGQQNV 778
+ M+ G GS +N+S M A V N+
Sbjct: 120 RDMINRGVPGSIVNVSSMVAHVTFPNL 146
>3rj1_G Mediator of RNA polymerase II transcription subun; RNA polymeras II,
POL II, head module, head, regulator, helical bundle;
4.30A {Saccharomyces cerevisiae}
Length = 295
Score = 30.9 bits (68), Expect = 3.5
Identities = 11/104 (10%), Positives = 31/104 (29%), Gaps = 4/104 (3%)
Query: 1538 PTYSPSSPGYS---PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
+ PS G PT + + T+ + + S S + + + +
Sbjct: 192 IEFQPSQ-GVHYKVPTDTSTTATAATNGNNAGGGSNKSSVRPTGGANMATVPSTTNVNMT 250
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1638
+ + + + + T+ + ++P+Y
Sbjct: 251 VNTMGTGGQTIDNGTGRTGNGNMGITTEMLDKLMVTSIRSTPNY 294
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert
beta barrel domain hydrolase; HET: PMS; 1.40A
{Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Length = 441
Score = 30.9 bits (70), Expect = 4.0
Identities = 22/177 (12%), Positives = 42/177 (23%), Gaps = 10/177 (5%)
Query: 1510 PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS 1569
PG + S T G S S P + + + +
Sbjct: 201 PGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINAS------AT 254
Query: 1570 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP 1629
+ S+S + + S P + A + YS S
Sbjct: 255 GALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYS-NSA 313
Query: 1630 SYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
+P + S + + + + ++ G Y+ TS
Sbjct: 314 LPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYE-YYNGTS 369
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase
inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB:
1t6g_A 2b42_A 3hd8_A
Length = 381
Score = 30.9 bits (69), Expect = 4.0
Identities = 27/163 (16%), Positives = 44/163 (26%), Gaps = 6/163 (3%)
Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
+SP+ + +P P+ S S + AY + + S S T
Sbjct: 44 PPAEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFV 103
Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPT-----SPNYSPT-SSSYSPTSPS 1740
+ T S A +PS S + S P +S +
Sbjct: 104 ANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANR 163
Query: 1741 YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGY 1783
+ PT P GG P + +P +
Sbjct: 164 FLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAH 206
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 29.6 bits (66), Expect = 4.3
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 1516 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1575
S G S S S +PT S+ +PT+ +P + S S +P+S +
Sbjct: 2 SSGSSGMSM--LKPSGLKAPTKILKPGSTALKTPTAVV-APVEKTISSEKASSTPSSETQ 58
Query: 1576 SPTSPSY 1582
+
Sbjct: 59 EEFVDDF 65
Score = 29.6 bits (66), Expect = 4.4
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
S G S S S +P+ ++ +PT+ +P + S S +P+S +
Sbjct: 2 SSGSSGMSM--LKPSGLKAPTKILKPGSTALKTPTAVV-APVEKTISSEKASSTPSSETQ 58
Query: 1583 SPTSPSY 1589
+
Sbjct: 59 EEFVDDF 65
Score = 28.8 bits (64), Expect = 8.8
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
+ S S +PT ++ +PT+ +P + S S +P+S +
Sbjct: 6 SGMSMLKPSGLKAPTKILKPGSTALKTPTAVV-APVEKTISSEKASSTPSSETQEEFVDD 64
Query: 1652 Y 1652
+
Sbjct: 65 F 65
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 30.5 bits (70), Expect = 4.6
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 752 KAMVTAGSKGSFINISQMTACVGQQNV 778
+ ++ G G+ +N+S + N
Sbjct: 120 RGLIARGVPGAIVNVSSQCSQRAVTNH 146
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 30.5 bits (69), Expect = 5.3
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 1311 IEVLGIEAVRRALLDELRVVISF-DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1369
IE+ V+ + + ISF G V+ H IL + I + +
Sbjct: 230 IEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILA--TGFDATKNPIVQQLFVTTNQ 287
Query: 1370 GPMMRCSFEET 1380
+ E T
Sbjct: 288 DIKLTTHDEST 298
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 30.1 bits (67), Expect = 5.6
Identities = 12/61 (19%), Positives = 17/61 (27%)
Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
SP + + S P+SP S P N S + +P
Sbjct: 162 MKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTP 221
Query: 1747 T 1747
T
Sbjct: 222 T 222
>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_W
Length = 130
Score = 29.1 bits (65), Expect = 5.6
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 975 NAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE-----DPLSVEAQKNATLFFNI 1029
+F +D +P + ME+ LQER+KV G+ D ++V K +
Sbjct: 18 KGSVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKV---TV 74
Query: 1030 LLRSTFASKRVLK 1042
F SKR LK
Sbjct: 75 TSDGAF-SKRYLK 86
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 30.3 bits (68), Expect = 6.8
Identities = 6/52 (11%), Positives = 12/52 (23%)
Query: 1736 PTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
P + + + Y P S ++P+ Y
Sbjct: 47 PGYVWDNKNECEGAAEETYQELNYEPSISADKLTWTPTRLAKTVFNTYEDDD 98
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 29.8 bits (68), Expect = 6.9
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 751 LKAMVTAGSKGSFINISQMTACVGQQNV 778
++ M G S IN+S + VG ++
Sbjct: 125 IQRMKNKGLGASIINMSSIEGFVGDPSL 152
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR
kinase/phosphatase, HPRK/P, P-loop, walker A BOX,
catabolite repression; 2.50A {Mycoplasma pneumoniae}
SCOP: c.98.2.1 c.91.1.2
Length = 312
Score = 29.5 bits (66), Expect = 9.5
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 26/85 (30%)
Query: 990 MHPMEVVEAVDKLQERLKVVPGED----PLSVEAQKNATL----FFNILLRSTFASKRVL 1041
M + V E +++ Q+ + ++ G + V K F+ V
Sbjct: 1 MKKLLVKELIEQFQDCVNLIDGHTNTSNVIRVPGLKRVVFEMLGLFS------SQIGSVA 54
Query: 1042 KEHRLTREAFEWVIGEIESRFLQSL 1066
++G+ E FL
Sbjct: 55 ------------ILGKREFGFLSQK 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.388
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 28,076,067
Number of extensions: 1796851
Number of successful extensions: 5488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4381
Number of HSP's successfully gapped: 400
Length of query: 1815
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1708
Effective length of database: 3,714,246
Effective search space: 6343932168
Effective search space used: 6343932168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (28.9 bits)