RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 000235
(1815 letters)
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 1446 bits (3743), Expect = 0.0
Identities = 779/1469 (53%), Positives = 1025/1469 (69%), Gaps = 72/1469 (4%)
Query: 6 PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
YS A + V+ VQFG+ SP+E+R +SV +I ET + + + K GGL+DPRLG+IDR
Sbjct: 4 QYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRN 63
Query: 64 MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
+KC+TC M ECPGHFGH++LAKP+FH+GF+ + + VC +C K+L DE + +Q
Sbjct: 64 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQ 123
Query: 124 ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
AL I++ K R I CK K CE DVP +D L +GGCG QP + +G+
Sbjct: 124 ALAIKDSKKRFAAIWTLCKTKMVCET----DVPSEDDPTQLVS-RGGCGNTQPTIRKDGL 178
Query: 184 KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
K++ +K R D E + L+ E +L + K IS +D LG N ++RP+W
Sbjct: 179 KLVGSWKKDRATGDADE------PELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEW 232
Query: 244 MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
MIL LP+PPPPVRPS DDLT +LA I++ N +L E NGAP H I E
Sbjct: 233 MILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAE 292
Query: 294 QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 293 SLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVI 352
Query: 354 TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
+ DP + +DQ+GVP SIA LTYPE VTPYNI+RL +LV GP+ PG KY+IRD G
Sbjct: 353 SGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGA---KYVIRDSG 409
Query: 414 QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
R+DLRY K++ D L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRL
Sbjct: 410 DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRL 469
Query: 474 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
NLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L VP IVSPQSN+P MGIVQDTL G
Sbjct: 470 NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCG 529
Query: 534 CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
RK+T RDTFIE D +N+L W D+DG +P P I+KP+PLW+GKQ+ ++ IP I+L R
Sbjct: 530 IRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQR 589
Query: 594 TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
D +L+ D + I G+++ G + KKT+G+S G LIHV+ E GP K
Sbjct: 590 F-----DEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKL 644
Query: 654 LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
G+ Q +VN+WLL N FS GIGDTIAD TM I +TI++AK V ++ K+AQ L +
Sbjct: 645 FGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAK 704
Query: 714 PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
G T+ ESFE+ V + LN ARD+AG A+ +L + NN+K MV AGSKGSFINI+QM+ACV
Sbjct: 705 HGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACV 764
Query: 774 GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
GQQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLI
Sbjct: 765 GQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLI 824
Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
DTAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+ IE Q+LD+
Sbjct: 825 DTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDT 884
Query: 894 LKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT 953
+ + F+K +R ++ + + L E ++ +L+ + D E ++L DR +
Sbjct: 885 IGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDR-KFLR 943
Query: 954 EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
E+ G+++WPLPVN++R+I NAQ+TF +D +PSD+ ++V V LQE L V+ G++
Sbjct: 944 EVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKN 1003
Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
+ AQ++A F LLRS A++RVL+E+RLT++AF+WV+ IE++FL+S+V PGEM+
Sbjct: 1004 EIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMV 1063
Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+PG
Sbjct: 1064 GVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGH 1123
Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
+ +E+AK ++ A+E+TTL+SVT A+E++YDPDP T+I ED E ++ ++ + DE+
Sbjct: 1124 AADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQS 1183
Query: 1194 --KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMN 1251
+ SPWLLR+EL+R M DK L+M V E+I Q F +DL I+++DN +KLI+R R++
Sbjct: 1184 FDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVR 1243
Query: 1252 DEAPKGELNDESAEDDVFLKKIESNMLTEMALR--------------------------- 1284
PK + AE+D LKKIE+ ML + LR
Sbjct: 1244 ---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKE 1300
Query: 1285 --------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
GVNL VM +D R +N I+I+EVLGIEA R AL E+ VI+ DGS
Sbjct: 1301 PEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGS 1360
Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
YVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A AE D
Sbjct: 1361 YVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDC 1420
Query: 1397 RGVTENIMLGQLAPIGTGDCSLYLNDEML 1425
RGV+EN++LGQ+APIGTG + +++E L
Sbjct: 1421 RGVSENVILGQMAPIGTGAFDVMIDEESL 1449
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 581 bits (1499), Expect = e-179
Identities = 181/854 (21%), Positives = 315/854 (36%), Gaps = 125/854 (14%)
Query: 184 KMIAEYKAQRKKN-DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
+M AE Q K D + E +E + + R KR+ + RP+
Sbjct: 454 RMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLE----VVRAFLDSGNRPE 509
Query: 243 WMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
WMIL+ +P+ PP +RP DL +I N L++ GAP II
Sbjct: 510 WMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNE 569
Query: 293 AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
++LQ + DN G P S RP++S+ L K+GR R NL+GKRVD+S R+V
Sbjct: 570 KRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSV 629
Query: 353 ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
I P + + Q G+P +AL L P + + + V+
Sbjct: 630 IVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAAR---------------- 673
Query: 413 GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
R L++ D E+ + + G VL NR P+LH++ I + ++ + +
Sbjct: 674 ------RMLERQRDIKDEV-WDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQ 726
Query: 473 LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
L+ V +NADFDGD+M +HVP S +AE M+ ++SP S P+ +D +L
Sbjct: 727 LHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIIL 786
Query: 533 GCRKITK-----RDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
G IT+ + +E L E + + P + R G+ + P
Sbjct: 787 GLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPD 846
Query: 588 QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLC-----------------KKTL 630
+ L D + + G +L +
Sbjct: 847 EALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQE 906
Query: 631 GTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDT 690
S L++ + +G + + L ++ + + +IGI D + E
Sbjct: 907 KNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIP----EEKKQY 962
Query: 691 ISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSES-- 748
+ +A + + + + G +++ Q+ ++ + K+ E+
Sbjct: 963 LEEADRKLLQIEQAYEM-------GFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYP 1015
Query: 749 -NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 807
N L M +G++G+ I Q+ + G
Sbjct: 1016 FNPLYVMAQSGARGNPQQIRQLCGLR--------------------GLMQKPSGETFEVP 1055
Query: 808 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNS 867
V +S+ GLT E+F + G R+G DTA++T+++GY+ R+LV +I+V+ +
Sbjct: 1056 VRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTN 1115
Query: 868 LGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDL 927
V F E SL+++K +A + +L ++ L
Sbjct: 1116 YISVPLFQPDEVT-----------RSLRLRKRADIEAGLY---------GRVLAREVEVL 1155
Query: 928 KTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL--PVNLKRLIWNAQKTFKVDPR 985
E D + L P+ P+ + QK + D
Sbjct: 1156 GVRLEEGRYLS------MDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDLS 1209
Query: 986 RPSDMHPMEVVEAV 999
P+ + EAV
Sbjct: 1210 M---ARPVSIGEAV 1220
Score = 245 bits (627), Expect = 4e-66
Identities = 86/434 (19%), Positives = 171/434 (39%), Gaps = 97/434 (22%)
Query: 993 MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
VE + E + + +D + A + +RS + + + ++ +
Sbjct: 1149 AREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQ---TRYGVCQKCYG 1205
Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS-AKNVTLGVPRLR 1111
+ + V+ GE +G VAAQSIGEP TQ+T+ TFH GV+ A ++T G+PR+
Sbjct: 1206 Y------DLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVI 1259
Query: 1112 EIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTI 1171
E+ A++ K ++ + GV +E + + + S + E Y +
Sbjct: 1260 ELFE-ARRPKAKAVISEID-GVVRIEETEEKL-----SVFVESEGFSKE--YKLPKEARL 1310
Query: 1172 IEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDL 1231
+ +D ++V++ + I P ++ L AV + +E
Sbjct: 1311 LVKDGDYVEAGQPLTRGAIDPHQL----LEA-----------KGPEAVERYLVEEIQK-- 1353
Query: 1232 TCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAV 1291
+ R + + +L+D K IE ++ +M ++ V +
Sbjct: 1354 ------------VYRAQGV-------KLHD---------KHIE-IVVRQM-MKYVEV--- 1380
Query: 1292 MCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMT 1351
D R +++E +EA+ L+ E + +
Sbjct: 1381 ---TDPGDSRLLEG---QVLEKWDVEALNERLIAEGK-------------------TPVA 1415
Query: 1352 YRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPI 1411
++ LM +T+ ++ + SF+ T +L +AA+ + D L G+ EN++LG+L P
Sbjct: 1416 WKPLLMGVTKSALSTK--SWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPA 1473
Query: 1412 GTGDCSLYLNDEML 1425
GTG +++
Sbjct: 1474 GTG-SDFVRFTQVV 1486
Score = 42.5 bits (99), Expect = 5e-04
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 40/119 (33%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGET----TERGKPKPGGLSDPRL-GTI-D------ 61
+VR V+ + SP++IR S ++E ET T KP+ GL D R+ G I D
Sbjct: 3 EVRKVRIALASPEKIRSWSYGEVEKPETINYRT--LKPERDGLFDERIFGPIKDYECACG 60
Query: 62 --RKMK-----CETCTANMAECPG-----------HFGHLELAKPMFHIGFMKTVLSIM 102
++ + CE C G GH+ELA P HI F+K V S +
Sbjct: 61 KYKRQRFEGKVCERC--------GVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKI 111
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
[TaxId: 5053]}
Length = 422
Score = 33.1 bits (75), Expect = 0.34
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT-SPSYSPTSPTYSP 1689
+S + T+ + + YS T+ + + A+ T+ PT S+ P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 32.3 bits (73), Expect = 0.56
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT--YSPSS 1544
G +SS ++ + + GYS T+ + + T+ PT PT Y
Sbjct: 357 GYCLKDSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPTIPTSFY---- 411
Query: 1545 PGYSPTSP 1552
PG +P S
Sbjct: 412 PGLTPYSA 419
Score = 32.3 bits (73), Expect = 0.60
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT-SPSYSPTSPSYSP 1640
+S + T+ + + YS T+ A + A+ T+ PT S+ P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 32.0 bits (72), Expect = 0.66
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
+S + T+ + + YS T+ A + + T+ PT P S+ P
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPTIP------TSFYPGL 414
Query: 1699 AKYSP 1703
YS
Sbjct: 415 TPYSA 419
Score = 31.6 bits (71), Expect = 0.85
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSP 1647
+S + T+ + + YS T+ A + A+ T+ PT S+ P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 31.2 bits (70), Expect = 1.1
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT-SPSYSPTSPSYSP 1570
+S T+ + GYS T+ + + T+ PT S+ P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAADL-ATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 31.2 bits (70), Expect = 1.4
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSP 1584
+S T+ T + + GYS T+ A + ++ T+ PT S+ P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 30.8 bits (69), Expect = 1.6
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSP 1612
+S + T+ + + YS T+ + + ++ T+ PT S+ P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 30.8 bits (69), Expect = 1.7
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS--PGYSP 1675
+S T+ + + YS T+ + + ++ T+ PT PTS PG +P
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPT----IPTSFYPGLTP 416
Query: 1676 TSP 1678
S
Sbjct: 417 YSA 419
Score = 29.6 bits (66), Expect = 3.4
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA-YSPTSPAYSP 1626
+S + T+ + + YS T+ + + ++ T+ PT P + P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 29.6 bits (66), Expect = 3.7
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSP 1654
+S + T+ + YS T+ A + ++ T+ PT S+ P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 29.6 bits (66), Expect = 3.9
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSP 1668
+S T+ + YS T+ + + ++ T+ PT S+ P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 29.6 bits (66), Expect = 4.3
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA-YSPTSPAYSP 1619
+S + T+ + + YS T+ + + ++ T+ PT P + P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 28.5 bits (63), Expect = 7.7
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSP 1591
+S T ++ + YS T+ + + ++ T+ PT S+ P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 28.5 bits (63), Expect = 8.7
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSP 1598
SS T+ + YS T+ + + ++ T+ PT S+ P YS
Sbjct: 362 DSSSHTSYTTTSTVTAAPSGYSATTMAA-DLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 160
Score = 31.2 bits (70), Expect = 0.68
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 1652 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
Y P Y +P + T G+ T+P+ + + + + S SL SPS+
Sbjct: 82 YFQCQPKYGLFAPVHKVTKIGFPSTTPAKAKANAVRRVMATT--------SASLKRSPSA 133
Query: 1712 PRLSPASPYSPTSPNYSPTSSSYSPTS 1738
LS S + + + + + TS
Sbjct: 134 SSLSSMSSVASSVSSRPSRTGLLTETS 160
>d1g8ta_ d.4.1.2 (A:) Sm endonuclease {Serratia marcescens [TaxId:
615]}
Length = 241
Score = 30.5 bits (68), Expect = 1.4
Identities = 26/163 (15%), Positives = 44/163 (26%), Gaps = 8/163 (4%)
Query: 462 RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
+ L + + NA D + S ++ L + PQ +
Sbjct: 56 KTDPALNPADTLAPADYTGANAALKVDRGHQAPLASLAGVSDWESLNYLSNIT--PQKSD 113
Query: 522 PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
G RK+ R +E GK+P P K +F
Sbjct: 114 LNQGAWARLEDQERKLIDRADISSVYTVTG--PLYERDMGKLPGTQKAHTIPSAYWKVIF 171
Query: 582 NLIIPKQINLFRTAAWHADNDKGILTA-GDTLVRIEKGELLSG 623
P AA+ D + V +++ E +G
Sbjct: 172 INNSPAVN---HYAAFLFDQNTPKGADFCQFRVTVDEIEKRTG 211
>g1jmu.1 e.35.1.1 (A:,B:) Membrane penetration protein mu1 {Reovirus
[TaxId: 10891]}
Length = 666
Score = 30.7 bits (69), Expect = 1.8
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP--TSPSYSPTSPSY 1652
+ P++ + S P+ S + +P + S TSP TS T+
Sbjct: 10 VFKPSAETSSTAVPSLSLSPGMLNPGGVPWIAIGDETSVTSPGALRRMTSKDIPETAIIN 69
Query: 1653 SPTSPSYSPTSPAYSPTS 1670
+ S P+ A P +
Sbjct: 70 TDNSSGAVPSESALVPYN 87
Score = 29.1 bits (65), Expect = 6.0
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSY 1596
+ PS+ S P+ S + +P + S TSP TS T+
Sbjct: 10 VFKPSAETSSTAVPSLSLSPGMLNPGGVPWIAIGDETSVTSPGALRRMTSKDIPETAIIN 69
Query: 1597 SPTSPSYSPTSPAYSPTS 1614
+ S P+ A P +
Sbjct: 70 TDNSSGAVPSESALVPYN 87
Score = 28.4 bits (63), Expect = 9.7
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP--TSPSYSPTSPSY 1638
+ P++ + S PS S + +P + S TSP TS T+
Sbjct: 10 VFKPSAETSSTAVPSLSLSPGMLNPGGVPWIAIGDETSVTSPGALRRMTSKDIPETAIIN 69
Query: 1639 SPTSPSYSPTSPSYSPTS 1656
+ S P+ + P +
Sbjct: 70 TDNSSGAVPSESALVPYN 87
>d1lnla1 a.86.1.1 (A:-3-304) Mollusc hemocyanin {Mollusca (Rapana
thomasiana) [TaxId: 29165]}
Length = 307
Score = 30.2 bits (67), Expect = 2.0
Identities = 10/114 (8%), Positives = 27/114 (23%)
Query: 1659 YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
+ + T+P +A + +L+
Sbjct: 93 IPYWDTVVPQEDLPAFFNDEIWDDALFHANFTNPFNGADIDFNHQKIARDINVDKLAKEG 152
Query: 1719 PYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
P + ++ + + ++ + GG +YS Y+
Sbjct: 153 PKGYDTWSFKQYIYALEQEDYCDFEVQFEIAHNAIHAWVGGTEEYSMGHLHYAS 206
>d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal
domain {Mycoplasma pneumoniae [TaxId: 2104]}
Length = 132
Score = 28.9 bits (65), Expect = 2.7
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 26/85 (30%)
Query: 990 MHPMEVVEAVDKLQERLKVVPGEDPLS----VEAQKNATL----FFNILLRSTFASKRVL 1041
M + V E +++ Q+ + ++ G S V K F+ V
Sbjct: 1 MKKLLVKELIEQFQDCVNLIDGHTNTSNVIRVPGLKRVVFEMLGLFS------SQIGSVA 54
Query: 1042 KEHRLTREAFEWVIGEIESRFLQSL 1066
++G+ E FL
Sbjct: 55 ------------ILGKREFGFLSQK 67
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 30.1 bits (66), Expect = 3.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 1288 LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
L+ + +EDV R + L I LG+E R LL
Sbjct: 15 LIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELL 51
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 131
Score = 28.2 bits (63), Expect = 4.3
Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 683 TMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQ 742
M+ ++D+ + + LI+ A++ + + + + F N+++ A S
Sbjct: 10 VMDHVSDSFLETNVPLLVLIEAAKNGNEKE--VKEYAQVFREHANKLIEVANLACSISNN 67
Query: 743 KSLSE 747
+ +
Sbjct: 68 EEGVK 72
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15
[TaxId: 1409]}
Length = 197
Score = 29.0 bits (65), Expect = 4.5
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 13/50 (26%)
Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIH---------VIWEEVGPDAA 650
+ R+E G +L +G +H VIWE+VG DA
Sbjct: 41 KPIFRLEAG----ASLKNVVIGAPAADGVHCYGDCTITNVIWEDVGEDAL 86
>d1js8a1 a.86.1.1 (A:2503-2791) Mollusc hemocyanin {Giant octopus
(Octopus dofleini) [TaxId: 267067]}
Length = 289
Score = 28.7 bits (63), Expect = 6.8
Identities = 9/111 (8%), Positives = 27/111 (24%), Gaps = 2/111 (1%)
Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTS-PSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
+ P + T+ + ++ + SP +
Sbjct: 82 AKGSHVGIPYWDWTTTFANLPVLVTEEKDNSFHHAHIDVANTDTTRSPRAQLFDDPDKGD 141
Query: 1722 PTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
+ + + ++ ++ GG+ Y S+ Y+
Sbjct: 142 KSFFYRQIALALEQTDFCDFEIQFE-IGHNAIHSWVGGSSPYGMSTLHYTS 191
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 28.2 bits (63), Expect = 8.5
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 673 GIGDTIADAKTMETINDTISKAKN-NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
G G+ + + M +N I K N + L+ +A+ E + E V+N
Sbjct: 136 GTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVE---VLREIKRLGRLPVVN 192
Query: 732 TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
A + A +L M+ G+ G F+
Sbjct: 193 FAAGGVTTPADAAL--------MMHLGADGVFVG 218
>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 145
Score = 27.4 bits (60), Expect = 8.9
Identities = 10/62 (16%), Positives = 14/62 (22%)
Query: 1709 PSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
PS RL S +S S ++P + P
Sbjct: 81 PSPLRLENIRIQQEQKRKRFHGGKSSGNSSSSLGEMVSGTFRATPTTTAKQKQKVTKHIP 140
Query: 1769 QY 1770
Y
Sbjct: 141 PY 142
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
{Methylobacterium extorquens [TaxId: 408]}
Length = 596
Score = 28.4 bits (62), Expect = 9.5
Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 5/46 (10%)
Query: 337 RGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTP 382
N FS I N+ QL W+ + L P
Sbjct: 18 GKNYDSNN--FSDLKQINKG---NVKQLRPAWTFSTGLLNGHEGAP 58
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
Length = 560
Score = 28.4 bits (62), Expect = 9.7
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 337 RGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTP 382
+R FS I N+ LG+ W + L+ T TP
Sbjct: 22 GRTYAEQR--FSPLKQIDAS---NVRSLGLAWYMDLDNTRGLEATP 62
>d1i5pa3 f.1.3.1 (A:1-263) delta-Endotoxin (insectocide), N-terminal
domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA
[TaxId: 29339]}
Length = 263
Score = 27.9 bits (62), Expect = 10.0
Identities = 11/83 (13%), Positives = 24/83 (28%)
Query: 618 GELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 677
L + L +I+ + + L T+ +N L + + +
Sbjct: 58 SSFLLKKVGSLIGKRILSELWGIIFPSGSTNLMQDILRETEQFLNQRLNTDTLARVNAEL 117
Query: 678 IADAKTMETINDTISKAKNNVKN 700
I + N + N +N
Sbjct: 118 IGLQANIREFNQQVDNFLNPTQN 140
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.388
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,885,701
Number of extensions: 351637
Number of successful extensions: 1002
Number of sequences better than 10.0: 1
Number of HSP's gapped: 971
Number of HSP's successfully gapped: 44
Length of query: 1815
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1717
Effective length of database: 1,062,056
Effective search space: 1823550152
Effective search space used: 1823550152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.2 bits)