Your job contains 1 sequence.
>000236
MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT
IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED
HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK
CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN
DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGL
LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA
FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKV
GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF
YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD
LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD
QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL
TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE
HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT
HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS
KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATV
MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGI
GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML
TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE
FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG
RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC
KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY
VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV
TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED
HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEV
GSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQ
NQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNS
SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA
VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL
KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL
WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK
AMEYVESTLA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000236
(1810 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2088644 - symbol:RRP5 "Ribosomal RNA Processin... 4222 0. 1
RGD|1304933 - symbol:Pdcd11 "programmed cell death 11" sp... 824 1.3e-149 4
MGI|MGI:1341788 - symbol:Pdcd11 "programmed cell death 11... 827 3.0e-149 4
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 952 3.9e-148 3
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 942 5.3e-147 3
UNIPROTKB|F1PLK8 - symbol:PDCD11 "Uncharacterized protein... 925 4.9e-146 3
UNIPROTKB|Q14690 - symbol:PDCD11 "Protein RRP5 homolog" s... 920 4.2e-144 3
UNIPROTKB|F1S842 - symbol:LOC100157027 "Uncharacterized p... 897 1.1e-142 3
UNIPROTKB|F1S843 - symbol:LOC100157027 "Uncharacterized p... 897 1.2e-142 3
UNIPROTKB|F1P3T9 - symbol:PDCD11 "Uncharacterized protein... 739 2.7e-135 3
ZFIN|ZDB-GENE-030131-4076 - symbol:pdcd11 "programmed cel... 646 7.7e-127 4
CGD|CAL0005606 - symbol:orf19.1578 species:5476 "Candida ... 835 2.5e-124 2
SGD|S000004842 - symbol:RRP5 "RNA binding protein involve... 848 1.6e-108 3
ASPGD|ASPL0000042752 - symbol:rrp5 species:162425 "Emeric... 835 4.1e-102 5
POMBASE|SPCC1183.07 - symbol:SPCC1183.07 "U3 snoRNP-assoc... 900 2.0e-87 2
WB|WBGene00002850 - symbol:let-716 species:6239 "Caenorha... 427 7.6e-53 4
DICTYBASE|DDB_G0290181 - symbol:DDB_G0290181 "RNA binding... 503 4.6e-52 4
FB|FBgn0039182 - symbol:CG5728 species:7227 "Drosophila m... 408 8.3e-50 3
DICTYBASE|DDB_G0286941 - symbol:DDB_G0286941 species:4468... 430 1.4e-36 1
TIGR_CMR|SO_2402 - symbol:SO_2402 "ribosomal protein S1" ... 190 2.6e-19 2
UNIPROTKB|P0AG67 - symbol:rpsA "30S ribosomal subunit pro... 185 1.7e-16 4
TIGR_CMR|BA_1519 - symbol:BA_1519 "ribosomal protein S1" ... 221 1.7e-16 2
TIGR_CMR|SPO_0802 - symbol:SPO_0802 "ribosomal protein S1... 163 3.2e-16 4
UNIPROTKB|Q9KQT3 - symbol:VC_1915 "30S ribosomal protein ... 171 2.0e-14 2
TIGR_CMR|VC_1915 - symbol:VC_1915 "ribosomal protein S1" ... 171 2.0e-14 2
TIGR_CMR|CBU_0528 - symbol:CBU_0528 "ribosomal protein S1... 201 4.0e-13 3
UNIPROTKB|O06147 - symbol:rpsA "30S ribosomal protein S1"... 212 4.7e-13 2
UNIPROTKB|Q71X59 - symbol:LMOf2365_2340 "S1 RNA binding d... 173 1.4e-11 1
TIGR_CMR|GSU_2603 - symbol:GSU_2603 "ribosomal protein S1... 173 2.6e-11 2
TIGR_CMR|APH_0273 - symbol:APH_0273 "ribosomal protein S1... 195 7.2e-11 2
TIGR_CMR|CJE_0972 - symbol:CJE_0972 "ribosomal protein S1... 187 1.5e-10 3
TIGR_CMR|NSE_0408 - symbol:NSE_0408 "ribosomal protein S1... 188 5.6e-10 2
TIGR_CMR|CPS_2335 - symbol:CPS_2335 "ribosomal protein S1... 178 1.6e-09 2
TAIR|locus:2145860 - symbol:RPS1 "ribosomal protein S1" s... 159 4.1e-09 3
TIGR_CMR|ECH_0402 - symbol:ECH_0402 "putative ribosomal p... 189 5.2e-09 3
TAIR|locus:2095203 - symbol:AT3G23700 species:3702 "Arabi... 163 2.9e-08 1
TIGR_CMR|BA_5132 - symbol:BA_5132 "general stress protein... 142 2.9e-08 1
POMBASE|SPAC10F6.02c - symbol:prp22 "ATP-dependent RNA he... 125 6.0e-07 2
TIGR_CMR|CHY_1925 - symbol:CHY_1925 "hydroxymethylbutenyl... 153 8.6e-07 1
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 146 6.0e-06 1
UNIPROTKB|P46837 - symbol:yhgF "predicted transcriptional... 145 6.9e-06 2
UNIPROTKB|Q60A39 - symbol:MCA1032 "S1 RNA binding domain ... 130 8.4e-06 2
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 144 8.9e-06 1
UNIPROTKB|Q81VX9 - symbol:BAS0060 "S1 RNA binding domain ... 118 1.0e-05 1
TIGR_CMR|BA_0060 - symbol:BA_0060 "S1 RNA binding domain ... 118 1.0e-05 1
TIGR_CMR|BA_3944 - symbol:BA_3944 "polyribonucleotide nuc... 135 2.4e-05 2
UNIPROTKB|Q0BZL2 - symbol:HNE_2386 "S1 RNA binding domain... 132 3.8e-05 2
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 138 3.9e-05 1
UNIPROTKB|P50849 - symbol:pnp "Polyribonucleotide nucleot... 137 4.7e-05 2
WB|WBGene00003393 - symbol:mog-5 species:6239 "Caenorhabd... 131 5.5e-05 3
UNIPROTKB|Q09530 - symbol:mog-5 "Probable pre-mRNA-splici... 131 5.5e-05 3
UNIPROTKB|Q724J5 - symbol:LMOf2365_0229 "RNA-binding prot... 110 7.3e-05 1
UNIPROTKB|Q9KNL6 - symbol:VC_2716 "Putative uncharacteriz... 146 8.1e-05 3
TIGR_CMR|VC_2716 - symbol:VC_2716 "conserved hypothetical... 146 8.1e-05 3
TAIR|locus:2119946 - symbol:emb2726 "embryo defective 272... 132 0.00026 2
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 131 0.00028 1
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 131 0.00028 1
TIGR_CMR|CBU_0852 - symbol:CBU_0852 "polyribonucleotide n... 134 0.00030 2
TIGR_CMR|CPS_2207 - symbol:CPS_2207 "polyribonucleotide n... 142 0.00038 2
UNIPROTKB|Q3IJ73 - symbol:pnp "Polyribonucleotide nucleot... 135 0.00040 2
UNIPROTKB|Q9KU76 - symbol:pnp "Polyribonucleotide nucleot... 131 0.00082 3
TIGR_CMR|VC_0647 - symbol:VC_0647 "polyribonucleotide nuc... 131 0.00082 3
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 122 0.00095 1
>TAIR|locus:2088644 [details] [associations]
symbol:RRP5 "Ribosomal RNA Processing 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005886 EMBL:CP002686
GO:GO:0005730 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K14792 OMA:LHLADIY
IPI:IPI00527296 RefSeq:NP_187803.4 UniGene:At.50175 PRIDE:F4J8K6
EnsemblPlants:AT3G11964.1 GeneID:820370 KEGG:ath:AT3G11964
Uniprot:F4J8K6
Length = 1896
Score = 4222 (1491.3 bits), Expect = 0., P = 0.
Identities = 867/1496 (57%), Positives = 1076/1496 (71%)
Query: 332 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 391
+KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHSDVKPGMV K KVI+VD+FGAIV
Sbjct: 433 FKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIV 492
Query: 392 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 451
QF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL I
Sbjct: 493 QFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPI 552
Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
LSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VV
Sbjct: 553 LSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVV 612
Query: 512 KCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSK 571
KCR+ S++ ++RI L+ +K + +K K
Sbjct: 613 KCRVTSAVHGTQRITLNDSIKLGSIVSGIIDTITSQAVIVRVK-----------SKSVVK 661
Query: 572 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 631
GTI EHLADH E A ++ S+++PGYE D+LLVLD E +N+ LS+KYSLI A++LPSD
Sbjct: 662 GTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSLIKLAEELPSDF 721
Query: 632 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
+ + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSKA+D +AD+S++++VGQSVR+NI
Sbjct: 722 NQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANI 781
Query: 692 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 751
+DVN E RITLSLKQS C+S DASF+QE+FL++EKI+ LQSS S+ WVE F IGS
Sbjct: 782 VDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGS 841
Query: 752 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 811
+I+G + E ND GVVV+F+ ++V GFI H + GAT+ GSV+ A +LD+++AERLVDL
Sbjct: 842 LIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVNAVVLDISRAERLVDL 901
Query: 812 SLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
SL+ ++ + +L VHQ V+A+VEIVKE +LVLS+PE+ ++
Sbjct: 902 SLRPELLNNLTKEVSNSSKKKRKRGISK--ELEVHQRVSAVVEIVKEQHLVLSIPEHGYT 959
Query: 872 IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXXXXXXX 931
IGYASVSDYNTQK P KQF GQSV+A+V A+ + T+GRLLLLL ++
Sbjct: 960 IGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLTSGRLLLLLDSVSGTSETSRSKRA 1019
Query: 932 XX-XXYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 990
+VGS+V AEITEIKP ELR+ FG F GRIHITEV + ++ + F+ F++GQ
Sbjct: 1020 KKKSSCEVGSVVHAEITEIKPFELRVNFGNSFRGRIHITEVLVNDASTSDEPFAKFRVGQ 1079
Query: 991 TVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKV 1049
+++AR++AK D+KK+ LWELS+KP+ML SE E+ + + GQ V GYVYKV
Sbjct: 1080 SISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFNDTQESEQLEFAAGQCVIGYVYKV 1139
Query: 1050 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1109
D EW L +SR++ A++FILD++ + EL+EF+RRF IGKAV+G+VL+ NKEKK LRLV
Sbjct: 1140 DKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFPIGKAVSGYVLTYNKEKKTLRLVQ 1199
Query: 1110 RPF-------QDGISDKT----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
RP +G KT I D+ FIHEGDI+GGRISKIL GVGGL VQ+GP
Sbjct: 1200 RPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEGDILGGRISKILPGVGGLRVQLGP 1259
Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
+++GRVHFTE+ + V P DPL G+ EGQFVKCKVLEIS + +GT+ +ELS
Sbjct: 1260 YVFGRVHFTEINDSWV--P---------DPLDGFREGQFVKCKVLEISSSSKGTWQIELS 1308
Query: 1219 LRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1276
LR+SLDGMSS + S DL + D K E+IEDLSP+M VQGYVKN SKGCFI+LSR
Sbjct: 1309 LRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNTMSKGCFIILSRT 1367
Query: 1277 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1336
++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEPLSKR+EVTLKT ++ +SE
Sbjct: 1368 VEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGRPKSESY 1427
Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
+L LHVGD++ G+I+RVE +GLFI I+ T +VGLCH+S+LS+D ++N++ Y+AGE V+
Sbjct: 1428 DLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVR 1487
Query: 1397 VKILKVDKEKRRISLGMKSSYFKNDADNLQMXXXXXXXXXXXXXXXYNRSSLLENSSVAV 1456
KILK+D+EK+RISLGMKSSY N D+ +S +L AV
Sbjct: 1488 AKILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPINDPKSEVL----AAV 1543
Query: 1457 QDMDMESEDGG-SLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDXX 1514
D + GG SLVLAQ+ESRAS+PPLEV+LDD E+ D D+ SQNQ A D
Sbjct: 1544 DDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIEETDFDS--SQNQEKLLGANK-DEK 1600
Query: 1515 XXXXXXXXXXXXXXXXXXXXXXXXXXXDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1574
AP DEFE+LVRSSPNSSFVWIKYMAFMLS+
Sbjct: 1601 SKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEFEKLVRSSPNSSFVWIKYMAFMLSL 1660
Query: 1575 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634
AD+EKARSIAERAL+TINIREE EKLNIWVAYFNLENE+GNPPEE+V KVF+RA QYCDP
Sbjct: 1661 ADIEKARSIAERALRTINIREEEEKLNIWVAYFNLENEHGNPPEESVKKVFERARQYCDP 1720
Query: 1635 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWXXXXXXXXXXXXEGVQAVVQRA 1694
KKV+LALLG+YERTEQ KLAD+LL +MIKKFK SCK+W E +Q+VV RA
Sbjct: 1721 KKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCKIWLRKIQSSLKQNEEAIQSVVNRA 1780
Query: 1695 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1754
LL LPRHKHIKFISQTAILEFK GVADRGRS+FEG+L EYPKRTDLWS+YLDQEIRLG+
Sbjct: 1781 LLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGED 1840
Query: 1755 DLIRGLFERAIXXXXXXXXXXXXXXXYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
D+IR LFERAI +LEYEKSVG+EER+EYVKQ+AMEY STLA
Sbjct: 1841 DVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRAMEYANSTLA 1896
Score = 1601 (568.6 bits), Expect = 1.6e-164, P = 1.6e-164
Identities = 319/529 (60%), Positives = 389/529 (73%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILDNEIEANEDNLLPTIFH 63
+NIS GMKL GVV EVN+KD+VI D IE +E+ LL IF
Sbjct: 123 KNISPGMKLLGVVTEVNQKDIVI-SLPGGLRGLVRASEVSDFTDRGIEDDENELLGDIFS 181
Query: 64 VGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIEDHGY 123
VGQLV CIVL+LDDDKKE GKRKIW ++ Q GMV +A VKSIEDHG
Sbjct: 182 VGQLVPCIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHGS 241
Query: 124 ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 183
ILHFGLPS TGF+ ++ N +K G L+QGVV IDR RK+V+LSSDPD+V+KC+T
Sbjct: 242 ILHFGLPSITGFIEISDDG-NQESGMKTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCLT 300
Query: 184 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 243
KDL G+S DLL+PGMMV+ RVQS+LENG++ FLTYF GTVD+FHL+N +WK++YN
Sbjct: 301 KDLSGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEYN 360
Query: 244 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXX 303
Q+K VNARILF+DP+SRAVGLTL+P+++ N+APP HV GDI+D++K
Sbjct: 361 QNKTVNARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKSGLLLE- 419
Query: 304 IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
+PS P TPAYV+ +KEG+ +RVR+LG + +EGLA G LK SAFEG
Sbjct: 420 LPSKPTPTPAYVS---------------FKEGNHIRVRVLGLKQMEGLAVGTLKESAFEG 464
Query: 364 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
VFTHSDVKPGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEFE+ KP KKFKVGAE
Sbjct: 465 PVFTHSDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAE 524
Query: 424 LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
LVFRVLG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWITKIEKHGCFVRFYNG
Sbjct: 525 LVFRVLGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNG 584
Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 532
VQGF PR ELGL+PG +P S++HVG+VVKCR+ S++ ++RI L+ +K
Sbjct: 585 VQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLNDSIK 633
>RGD|1304933 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA;ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 RGD:1304933 GO:GO:0005829
GO:GO:0005634 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:22984 KO:K14792
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 IPI:IPI00870468
RefSeq:NP_001101074.2 UniGene:Rn.136636 ProteinModelPortal:D3ZNI3
Ensembl:ENSRNOT00000027512 GeneID:309458 KEGG:rno:309458
NextBio:660838 ArrayExpress:D3ZNI3 Uniprot:D3ZNI3
Length = 1876
Score = 824 (295.1 bits), Expect = 1.3e-149, Sum P(4) = 1.3e-149
Identities = 257/931 (27%), Positives = 426/931 (45%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL---- 57
+++ GM++ G V EVNE +LV+ NE A E+ L
Sbjct: 78 ESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLEDLL 137
Query: 58 -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVK 116
LP +F G LV C+V LD E GK+ + E ++ GM+LT V
Sbjct: 138 RLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSAEALRPGMLLTGTVS 195
Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
S+EDHGY++ G+ FL E N G K G L VV + VV L
Sbjct: 196 SLEDHGYLVDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGVVSL 255
Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
S + VS + + +++ L+PG++V +VQ + + G+ L+FLT+FTG VD HL+
Sbjct: 256 SVEHSQVSSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFLTFFTGLVDFMHLE- 314
Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
P Y+ + V A IL V P +R V L+L P LH P + + ++G + D
Sbjct: 315 --PKK--MGSYSSKQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTVLDD 370
Query: 289 SKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
+ + + AY +S +++ + + +K GS R RI+ + +
Sbjct: 371 ASVEGFFEKAGAIFRLRDGVL---AYARLSHLSDSKKAFSAEAFKLGSTHRCRIIDYSQM 427
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+ LA L+ S + D+K G +VKGKV+A+ FG +V+ ++ L P H+++
Sbjct: 428 DELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLAD 487
Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
+ P KKF G E+ RVL ++K++ +T KKTLV SKL ++ Y +A L THG
Sbjct: 488 IMMKNPEKKFNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPAITCYEDAKPGLQTHG 547
Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
I +++ +GC V+FYN VQG P+ EL +P +++ GQVVK +++ P+ R+
Sbjct: 548 VIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERML 607
Query: 527 LSF-MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIP--------TE 577
LSF ++ + ++ G +P T
Sbjct: 608 LSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHNIPAFLPTP 667
Query: 578 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIH 635
HL+DH+ + ++ ++ G ++L L ++LL K +L+++ + Q P S I
Sbjct: 668 HLSDHVANGPLLHHWLQTGDTLHRVLCLSQSEKHILLCRKPALVSTVEGGQDPKSLSEIQ 727
Query: 636 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
P ++ G+V +I + G FV+F L+G +P++ D S+ + GQ+V + + +V+
Sbjct: 728 PGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVD 787
Query: 696 SETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGS 751
R+ LSL+ S CS S SF+ LEE + + S L + + G
Sbjct: 788 ESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGM 847
Query: 752 VIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD 810
V++ V E + G VV D+ + + AG +E G + +L V + V
Sbjct: 848 VLDAMVQEVLENGSVVFGGGPVPDLILRASRYHRAGQELEPGQKKKVVVLHVDALKLEVH 907
Query: 811 LSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNH 870
+SL ++R +A HQ IV+ ++E++ V SL E H
Sbjct: 908 VSLHQDLVNR--KARKLRKNSR-------------HQ---GIVQHLEESFAVASLVETGH 949
Query: 871 SIGYASVSDYN-TQKFPQKQFLNGQSVIATV 900
+ ++ +S N T F ++ GQ V T+
Sbjct: 950 LVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 980
Score = 596 (214.9 bits), Expect = 1.3e-149, Sum P(4) = 1.3e-149
Identities = 120/265 (45%), Positives = 170/265 (64%)
Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
P + D+F+RLV SSPNSS +W++YMAF L ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 1606 PESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 1665
Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
VA NLEN YG+ +E++ KVF+RA+QY +P KV L L +Y ++E+ K A EL +M+K
Sbjct: 1666 VALLNLENMYGS--QESLAKVFERAVQYNEPLKVFLHLADIYTKSEKFKEAGELYNRMLK 1723
Query: 1664 KFKHSCKVWXXXXXXXXXXXXEGVQ-AVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
+F+ VW G V+QRAL LP +H+ I + A LEF+ G +R
Sbjct: 1724 RFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPTKEHVDVIVKFAQLEFQLGDVER 1783
Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXYL 1782
+++FE L+ YPKRTD+WS+Y+D I+ G +R +FER I YL
Sbjct: 1784 AKAIFENTLTTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYL 1843
Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1844 DYEKQHGTEKDVQAVKAKALEYVEA 1868
Score = 173 (66.0 bits), Expect = 2.9e-65, Sum P(4) = 2.9e-65
Identities = 49/168 (29%), Positives = 84/168 (50%)
Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
+ +D+ IV+G V + G + + ++ V +L+D +++PEK+F G V
Sbjct: 446 RYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKC 505
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
RVL +P +K++ +TLK + T+ I + G G I RV+ YG + N
Sbjct: 506 RVLLCDPEAKKLIMTLKKT-LVTSKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYN- 563
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
++ GL ELS H+ + E ++ G+ VKV +L + K R+ L K
Sbjct: 564 DVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK 611
Score = 130 (50.8 bits), Expect = 1.3e-149, Sum P(4) = 1.3e-149
Identities = 61/232 (26%), Positives = 104/232 (44%)
Query: 1103 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG--VGGLVVQIGPH- 1159
K+L+ + FQ G + K + D + F+ ++G K+ G G V+++ P+
Sbjct: 1193 KVLKHPDKKFQIGQAIKATVVGPDIPRAFLCLS-LIGPY--KLEEGDVAMGRVLKVLPNK 1249
Query: 1160 -LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
L F + + V Y E +PL+ + + V+C +L + + + LS
Sbjct: 1250 GLTVSFPFGRIGKVSVFHLSDSYSE---EPLTDFCPQKIVRCYILSTAHRM-----LALS 1301
Query: 1219 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
LRSS TN + + ++ P + IED+ +++GYVK++ I L +
Sbjct: 1302 LRSS-----RTNK-ETKSKIEDP--EVNSIEDIQAGQLLRGYVKSILPSSVVIGLGPSVM 1353
Query: 1279 AKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
V S++S E K P GKLV RVL V P +E++L SD+
Sbjct: 1354 GLVKHSHVSQCVSREKELYDKCLPEGKLVTARVLCVNPKKNLIELSLLPSDT 1405
Score = 120 (47.3 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 43/173 (24%), Positives = 77/173 (44%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
ED P + G + V GC + + V LS ++ PE+ F G++V V
Sbjct: 537 EDAKPGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAV 596
Query: 1309 LSVEPLSKRVEVTLKT-SDSRTASQSEINNL---SNLHVGDIVIGQIKRVESYGLFITIE 1364
L+ EP +R+ ++ K S S +S N+ S ++ G +V ++ GL + I
Sbjct: 597 LNCEPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAIL 656
Query: 1365 NTNLVGLCHVSELSEDHVDNIETIY---RAGEKVKVKILKVDKEKRRISLGMK 1414
N+ LS DHV N ++ + G+ + ++L + + ++ I L K
Sbjct: 657 PHNIPAFLPTPHLS-DHVANGPLLHHWLQTGDTLH-RVLCLSQSEKHILLCRK 707
Score = 112 (44.5 bits), Expect = 1.3e-149, Sum P(4) = 1.3e-149
Identities = 49/193 (25%), Positives = 87/193 (45%)
Query: 938 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
+G V I +K + GF G IH++ + DD V + K G+ VTAR+I
Sbjct: 1040 IGDKVTGTIKSVKATHAVVTLDDGFIGCIHVSRILDDVPEGVSPT-TTLKAGKKVTARVI 1098
Query: 998 A----KSNK--PDMKKSF---LWELSIKPSMLT----VSEIGSKLLFEEC-DVSIGQRVT 1043
K++K P F + ELS++PS L S E+ GQ VT
Sbjct: 1099 GGRDVKTSKFLPISHPRFVLTILELSVRPSELKGDYRALNTHSVSPMEKIRQYQAGQTVT 1158
Query: 1044 GYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1101
++ Y V +W + I ++ ++ +L ++ L+ ++F IG+A+ V+ +
Sbjct: 1159 CFLKKYNVMKKWLEVDIEPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQAIKATVVGPDIP 1218
Query: 1102 KKLLRL-VLRPFQ 1113
+ L L ++ P++
Sbjct: 1219 RAFLCLSLIGPYK 1231
Score = 112 (44.5 bits), Expect = 1.0e-62, Sum P(5) = 1.0e-62
Identities = 29/115 (25%), Positives = 57/115 (49%)
Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
T H L L S + L + V+ G+ + + ++ P M++ G+VK++ G F+
Sbjct: 688 TLHRVLCLSQSEKHILLCRKPALVSTVEG-GQDPKSLSEIQPGMLLIGFVKSIKDYGVFV 746
Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
L + +SD +V +P + F G+ V +V +V+ +R+ ++L+ SD
Sbjct: 747 QFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSD 801
Score = 110 (43.8 bits), Expect = 1.7e-147, Sum P(4) = 1.7e-147
Identities = 43/169 (25%), Positives = 77/169 (45%)
Query: 1256 IVQGYV-KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE-- 1312
+ G V K + +KG + KV + +LSD Y E P +F K+V +LS
Sbjct: 1237 VAMGRVLKVLPNKGLTVSFPFGRIGKVSVFHLSDSYSEEPLTDFCPQKIVRCYILSTAHR 1296
Query: 1313 --PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
LS R T K + S+ E+N++ ++ G ++ G +K + + I + +++G
Sbjct: 1297 MLALSLRSSRTNKETKSKI-EDPEVNSIEDIQAGQLLRGYVKSILPSSVVIGL-GPSVMG 1354
Query: 1371 LC---HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
L HVS+ + + G+ V ++L V+ +K I L + S
Sbjct: 1355 LVKHSHVSQCVSREKELYDKCLPEGKLVTARVLCVNPKKNLIELSLLPS 1403
Score = 106 (42.4 bits), Expect = 9.2e-63, Sum P(4) = 9.2e-63
Identities = 41/175 (23%), Positives = 77/175 (44%)
Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGK 1302
+K ++ +V V T G + +L + A + +LSD P G
Sbjct: 628 KKGSTVNTGQLVDVKVLEKTKNGLEVAILPHNIPAFLPTPHLSDHVANGPLLHHWLQTGD 687
Query: 1303 LVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
+ RVL + K + + K + S + +LS + G ++IG +K ++ YG+F+
Sbjct: 688 TLH-RVLCLSQSEKHILLCRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKSIKDYGVFV 746
Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ L GL + +S+ V + G+ V K+ VD+ K+R+ L ++ S
Sbjct: 747 QFPS-GLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLS 800
Score = 102 (41.0 bits), Expect = 2.0e-57, Sum P(3) = 2.0e-57
Identities = 46/209 (22%), Positives = 88/209 (42%)
Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI---EDLSPNMIVQGYVKNVTSKGC 1269
F + +R + + T S S + K + K+ E L P M++ G V ++ G
Sbjct: 143 FSPGMLVRCVVSSLDVTESGKKSVKLSVNPKRVNKVLSAEALRPGMLLTGTVSSLEDHGY 202
Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEK--EFPIGKLVAGRVLSVEPLSKRVEVTLKTSD- 1326
+ + L + Y+ K +F +G+ + V ++ V ++++ S
Sbjct: 203 LVDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGVVSLSVEHSQV 262
Query: 1327 -SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
S A++ + NL+NL G +V Q+++V +GL + T GL L + +
Sbjct: 263 SSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFL-TFFTGLVDFMHLEPKKMGS- 320
Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
Y + + VK IL V R + L ++
Sbjct: 321 ---YSSKQTVKACILCVHPRTRVVRLSLR 346
Score = 100 (40.3 bits), Expect = 1.1e-57, Sum P(4) = 1.1e-57
Identities = 36/178 (20%), Positives = 78/178 (43%)
Query: 1241 PGKHLEKIEDLSPNMIVQ-GYVKNVTSK-GCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1298
PG+ L +I ++ V+ K G L + A LS+LSD + F
Sbjct: 352 PGRPLTRISYQQLGTVLDDASVEGFFEKAGAIFRLRDGVLAYARLSHLSDSKKAFSAEAF 411
Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
+G R++ + + ++L+ S + ++ G IV G++ ++ +G
Sbjct: 412 KLGSTHRCRIIDYSQMDELALLSLRKS----IIAAPFLRYQDIKTGTIVKGKVLALKPFG 467
Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ + + + GL L++ + N E + G++VK ++L D E +++ + +K +
Sbjct: 468 MLVKV-GEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCRVLLCDPEAKKLIMTLKKT 524
Score = 97 (39.2 bits), Expect = 9.2e-63, Sum P(4) = 9.2e-63
Identities = 44/222 (19%), Positives = 96/222 (43%)
Query: 939 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
G++V+ ++ +KP + +K G G + + D +++N F G V R++
Sbjct: 453 GTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADI---MMKNPEKKFNTGDEVKCRVLL 509
Query: 999 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1058
P+ KK + ++K +++T S++ + +E D G + G + +V + L+
Sbjct: 510 CD--PEAKKLIM---TLKKTLVT-SKLPAITCYE--DAKPGLQTHGVIIRVKDYGCLVKF 561
Query: 1059 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1118
++ + + + +R F+ G+ V VL+ K+ + L + G
Sbjct: 562 YNDVQG--LVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK-LLSGSEP 618
Query: 1119 KTVDISNDNMQ-TFIHEGDIVGGRISKILSGVGGLVVQIGPH 1159
K + N + + ++ G +V ++ + GL V I PH
Sbjct: 619 KDESVKNSKKKGSTVNTGQLVDVKVLEKTKN--GLEVAILPH 658
Score = 82 (33.9 bits), Expect = 5.4e-138, Sum P(3) = 5.4e-138
Identities = 80/347 (23%), Positives = 141/347 (40%)
Query: 1091 VTGHVLSIN-KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI------HE---GDIVGG 1140
VTG +L++ K +R+ + + + DK + + + H GD V G
Sbjct: 987 VTGLILAVEGPASKRIRMPAQRDSETVDDKGEEEEEEEEEDLTVRSKKSHSLAIGDKVTG 1046
Query: 1141 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1200
I + + VV + G +H VS L EG P + G+ V
Sbjct: 1047 TIKSVKATHA--VVTLDDGFIGCIH--------VSRILDDVPEG-VSPTTTLKAGKKVTA 1095
Query: 1201 KVLEISRTVRGTFHVELSL-RSSLDGMS-STNSSDLSTDVDTPGKH----LEKIEDLSPN 1254
+V+ R V+ + + +S R L + S S+L D H +EKI
Sbjct: 1096 RVIG-GRDVKTSKFLPISHPRFVLTILELSVRPSELKGDYRALNTHSVSPMEKIRQYQAG 1154
Query: 1255 MIVQGYVK--NVTSKGCFIMLSRKLDAKV--LLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
V ++K NV K + + + ++ LL++LS ++ P+K+F IG+ + V
Sbjct: 1155 QTVTCFLKKYNVMKKWLEVDIEPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQAIKATV-- 1212
Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESYGLFITIENTNLV 1369
V P R + L S I L GD+ +G++ +V + GL ++ +
Sbjct: 1213 VGPDIPRAFLCL----------SLIGPYK-LEEGDVAMGRVLKVLPNKGLTVSFP-FGRI 1260
Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
G V LS+ + + T + + V+ IL R ++L ++SS
Sbjct: 1261 GKVSVFHLSDSYSEEPLTDFCPQKIVRCYILST--AHRMLALSLRSS 1305
Score = 81 (33.6 bits), Expect = 1.2e-137, Sum P(4) = 1.2e-137
Identities = 42/186 (22%), Positives = 80/186 (43%)
Query: 939 GSLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
G + + ++ P + L + F G G++ + ++D S E ++F + V I+
Sbjct: 1235 GDVAMGRVLKVLPNKGLTVSFPFGRIGKVSVFHLSDSYS---EEPLTDFCPQKIVRCYIL 1291
Query: 998 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEW 1053
+ +++ + LS++ S T E SK+ E D+ GQ + GYV +
Sbjct: 1292 STAHR-------MLALSLRSSR-TNKETKSKIEDPEVNSIEDIQAGQLLRGYVKSILPSS 1343
Query: 1054 ALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
++ + + + + S +E + + GK VT VL +N +K L+ L L P
Sbjct: 1344 VVIGLGPSVMGLVKHSHVSQCVSREKELYDKCLPEGKLVTARVLCVNPKKNLIELSLLPS 1403
Query: 1113 QDGISD 1118
G D
Sbjct: 1404 DTGKPD 1409
Score = 80 (33.2 bits), Expect = 1.8e-95, Sum P(4) = 1.8e-95
Identities = 22/94 (23%), Positives = 42/94 (44%)
Query: 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
D R FE + + P + VW Y+ + ++ R I ER + +++ + K
Sbjct: 1780 DVERAKAIFENTLTTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIH-LSLAPKRMKF- 1837
Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
+ Y + E ++G + VK +AL+Y + K
Sbjct: 1838 FFKRYLDYEKQHGTEKDVQAVKA--KALEYVEAK 1869
Score = 78 (32.5 bits), Expect = 1.4e-55, Sum P(2) = 1.4e-55
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 144 NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP------DTVSKCVTKDLKGISIDLLVPG 197
NS D++ G LL+G V+SI + V+ L VS+CV+++ K + L G
Sbjct: 1321 NSIEDIQAGQLLRGYVKSILPSSVVIGLGPSVMGLVKHSHVSQCVSRE-KELYDKCLPEG 1379
Query: 198 MMVSTRVQSI--LENGVMLSFLTYFTGTVDIF 227
+V+ RV + +N + LS L TG D+F
Sbjct: 1380 KLVTARVLCVNPKKNLIELSLLPSDTGKPDVF 1411
Score = 76 (31.8 bits), Expect = 8.0e-54, Sum P(4) = 8.0e-54
Identities = 58/236 (24%), Positives = 100/236 (42%)
Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG-------YDEGQFVKCKVLE 1204
LVV + L G V TE+ + + L+ Q +PL + G V+C V
Sbjct: 98 LVVSLPNGLQGFVQVTEICD-AYTQKLNE-QVAQEEPLEDLLRLPELFSPGMLVRCVVSS 155
Query: 1205 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE-KIEDLSPNMIVQGYVKN 1263
+ T G V+LS+ N LS + PG L + L + GY+ +
Sbjct: 156 LDVTESGKKSVKLSVNPK-----RVNKV-LSAEALRPGMLLTGTVSSLEDH----GYLVD 205
Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
+ G LS + A+ + + G +F +G+ + V ++ V ++++
Sbjct: 206 IGVDGTRAFLSLQ-KAQEYIRQKNKG------AKFKVGQYLTCVVEELKSNGGVVSLSVE 258
Query: 1324 TSD--SRTASQSEINNLSNLHVGDIVIGQIKRVESYGL---FITIENTNLVGLCHV 1374
S S A++ + NL+NL G +V Q+++V +GL F+T T LV H+
Sbjct: 259 HSQVSSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFLTFF-TGLVDFMHL 313
Score = 72 (30.4 bits), Expect = 1.9e-54, Sum P(4) = 1.9e-54
Identities = 70/310 (22%), Positives = 129/310 (41%)
Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ-TFIHEGDIVGGRISKILSGVGGLV 1153
VL +++ +K + L +P +S TV+ D + I G ++ G + I G+
Sbjct: 692 VLCLSQSEKHILLCRKPAL--VS--TVEGGQDPKSLSEIQPGMLLIGFVKSIKDY--GVF 745
Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--FDPLSGYDEGQFVKCKVLEISRTVRG 1211
VQ L G T + + V+ P + EGQ ++ DE + L +S G
Sbjct: 746 VQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLG 805
Query: 1212 -----TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1266
+F + L G+ S S+ S + T + D++P M++ V+ V
Sbjct: 806 DSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQT-------LADMTPGMVLDAMVQEVLE 858
Query: 1267 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
G + + +L ++ Y + ++ P G+ VL V+ L V V+L D
Sbjct: 859 NGSVVFGGGPVPDLILRASR---YHRAGQELEP-GQKKKVVVLHVDALKLEVHVSLH-QD 913
Query: 1327 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNI 1385
++ S H G ++ ++ ES+ + +E +LV +S L++ H D+
Sbjct: 914 LVNRKARKLRKNSR-HQG--IVQHLE--ESFAVASLVETGHLVAFSLISHLNDTFHFDS- 967
Query: 1386 ETIYRAGEKV 1395
E + R G+ V
Sbjct: 968 EKL-RVGQGV 976
Score = 67 (28.6 bits), Expect = 3.9e-53, Sum P(3) = 3.9e-53
Identities = 16/71 (22%), Positives = 37/71 (52%)
Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
+K++++ + S+ + EI +L +L G ++G +K V L +++ N L G V
Sbjct: 54 TKKLKIEKRKSNKSMKEKFEILSLESLCEGMRILGCVKEVNELELVVSLPN-GLQGFVQV 112
Query: 1375 SELSEDHVDNI 1385
+E+ + + +
Sbjct: 113 TEICDAYTQKL 123
Score = 65 (27.9 bits), Expect = 3.3e-54, Sum P(2) = 3.3e-54
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
SS + +K +D + SI+ + G ++ V+SIL + V++ G V H+
Sbjct: 1304 SSRTNKETKSKIEDPEVNSIEDIQAGQLLRGYVKSILPSSVVIGLGPSVMGLVKHSHVSQ 1363
Query: 232 TFPTTNWKND--YNQHKKVNARILFVDPTSRAVGLTLNP 268
D + K V AR+L V+P + L+L P
Sbjct: 1364 CVSREKELYDKCLPEGKLVTARVLCVNPKKNLIELSLLP 1402
Score = 60 (26.2 bits), Expect = 1.1e-53, Sum P(2) = 1.1e-53
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE 143
E +Q G +L YVKSI ++ G PS G + +++++
Sbjct: 1324 EDIQAGQLLRGYVKSILPSSVVIGLG-PSVMGLVKHSHVSQ 1363
Score = 56 (24.8 bits), Expect = 5.4e-61, Sum P(4) = 5.4e-61
Identities = 35/132 (26%), Positives = 61/132 (46%)
Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF--EIVKPGKKFKVGAEL 424
+HS + G V G + +V + A+V G + + + E V P K G ++
Sbjct: 1035 SHS-LAIGDKVTGTIKSVKATHAVVTLDDGFIGCIHVSRILDDVPEGVSPTTTLKAGKKV 1093
Query: 425 VFRVLG---VK-SKRITVTHKK-TLVKSKLAILSSYAEATDRLI-THGW--ITKIEKH-- 474
RV+G VK SK + ++H + L +L++ S + R + TH + KI ++
Sbjct: 1094 TARVIGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGDYRALNTHSVSPMEKIRQYQA 1153
Query: 475 G----CFVRFYN 482
G CF++ YN
Sbjct: 1154 GQTVTCFLKKYN 1165
Score = 56 (24.8 bits), Expect = 6.4e-53, Sum P(3) = 6.4e-53
Identities = 36/147 (24%), Positives = 66/147 (44%)
Query: 397 VKALCPLPHMS-EFEIVK-PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSS 454
++ PL S F+++K P KKF++G + V+G R + L+++
Sbjct: 1179 IRGRIPLLLTSLSFKVLKHPDKKFQIGQAIKATVVGPDIPRAFLC---------LSLIGP 1229
Query: 455 YA-EATDRLITHGWITKI-EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 512
Y E D + G + K+ G V F G G L EP + + ++V+
Sbjct: 1230 YKLEEGD--VAMGRVLKVLPNKGLTVSFPFGRIGKVSVFHLSDSYSEEPLTDFCPQKIVR 1287
Query: 513 CRIMSSIPASRRINLSFMMKPTRVSED 539
C I+S+ A R + LS ++ +R +++
Sbjct: 1288 CYILST--AHRMLALS--LRSSRTNKE 1310
Score = 55 (24.4 bits), Expect = 1.2e-67, Sum P(4) = 1.2e-67
Identities = 42/222 (18%), Positives = 85/222 (38%)
Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLL--EEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 755
TG++ +C S + + L E K +++SK GS + G +++
Sbjct: 588 TGQVVKVAVLNCEPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVN------TGQLVDV 641
Query: 756 KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 815
KV E G+ V+ H+ + F+ L+ V +G ++ + R++ LS
Sbjct: 642 KVLEKTKNGLEVAILPHN-IPAFLPTPHLSDH-VANGPLLHHWLQTGDTLHRVLCLSQSE 699
Query: 816 VFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 875
I R+ ++ + V+ +K+ + + P +
Sbjct: 700 KHILLCRKPALVSTVEGGQDPKSLS-EIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPK 758
Query: 876 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK 917
++ P + F+ GQ+V+A V + S R+LL L+
Sbjct: 759 TIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQ--RMLLSLR 798
Score = 55 (24.4 bits), Expect = 8.1e-53, Sum P(3) = 8.1e-53
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 194 LVPGMMVSTRVQSILEN-GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 252
L G + RV +L N G+ +SF G V +FHL +++ + D+ K V I
Sbjct: 1232 LEEGDVAMGRVLKVLPNKGLTVSFPFGRIGKVSVFHLSDSY-SEEPLTDFCPQKIVRCYI 1290
Query: 253 LFVDPTSRAVGLTL 266
L R + L+L
Sbjct: 1291 L--STAHRMLALSL 1302
Score = 54 (24.1 bits), Expect = 2.9e-65, Sum P(4) = 2.9e-65
Identities = 52/238 (21%), Positives = 92/238 (38%)
Query: 946 ITEIKPLELRLKFGIGFHGRIHITEVND---DKSNV-------VENLF---SNFKIGQTV 992
+ E+ LEL + G G + +TE+ D K N +E+L F G V
Sbjct: 90 VKEVNELELVVSLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLV 149
Query: 993 TARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1052
+ + KKS +LS+ P + +K+L E + G +TG V +++
Sbjct: 150 RCVVSSLDVTESGKKSV--KLSVNPKRV------NKVLSAEA-LRPGMLLTGTVSSLEDH 200
Query: 1053 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
L+ I L A E + +F +G+ +T V + ++ L +
Sbjct: 201 GYLVDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGVVSLSVEHS 260
Query: 1113 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1170
Q + T + S N+ + G +V ++ K+ GL + G V F L+
Sbjct: 261 QVSSAFATEEQSW-NLNNLL-PGLVVRAQVQKVTQF--GLQLNFLTFFTGLVDFMHLE 314
Score = 54 (24.1 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
I G IV G++ + G++V++G + G V L +I + +P ++ G
Sbjct: 450 IKTGTIVKGKVLALKPF--GMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTG------- 500
Query: 1192 YDEGQFVKCKVL 1203
DE VKC+VL
Sbjct: 501 -DE---VKCRVL 508
Score = 54 (24.1 bits), Expect = 9.0e-52, Sum P(3) = 9.0e-52
Identities = 29/130 (22%), Positives = 52/130 (40%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV----ESPEKEFPIGKL 1303
+E L M + G VK V + L L V ++ + D Y E +E P+ L
Sbjct: 77 LESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLEDL 136
Query: 1304 VA-GRVLSVEPLSKRVEVTLKTSDSRTAS------QSEINNLSN---LHVGDIVIGQIKR 1353
+ + S L + V +L ++S S +N + + L G ++ G +
Sbjct: 137 LRLPELFSPGMLVRCVVSSLDVTESGKKSVKLSVNPKRVNKVLSAEALRPGMLLTGTVSS 196
Query: 1354 VESYGLFITI 1363
+E +G + I
Sbjct: 197 LEDHGYLVDI 206
Score = 51 (23.0 bits), Expect = 1.8e-60, Sum P(4) = 1.8e-60
Identities = 36/156 (23%), Positives = 67/156 (42%)
Query: 955 RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1014
RL+ G+ + R+ + ++D K F K+G T RII S ++ L +
Sbjct: 385 RLRDGVLAYARL--SHLSDSKKAFSAEAF---KLGSTHRCRIIDYSQMDELALLSLRKSI 439
Query: 1015 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE 1074
I L +I + + + +++ + G + KV + L S HL A + + +
Sbjct: 440 IAAPFLRYQDIKTGTIVKGKVLAL--KPFGMLVKVGEQMRGLVPSMHL-ADIMMKN---- 492
Query: 1075 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1110
P +++F+ G V VL + E K L + L+
Sbjct: 493 P------EKKFNTGDEVKCRVLLCDPEAKKLIMTLK 522
Score = 50 (22.7 bits), Expect = 6.4e-53, Sum P(3) = 6.4e-53
Identities = 20/84 (23%), Positives = 34/84 (40%)
Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS---KAVDGQRADLSKTYYVGQSVRSN 690
I ++ GYV +I+ + + + G S + V ++ K G+ V +
Sbjct: 1326 IQAGQLLRGYVKSILPSSVVIGLGPSVMGLVKHSHVSQCVSREKELYDKCLPEGKLVTAR 1385
Query: 691 ILDVNSETGRITLSLKQSCCSSTD 714
+L VN + I LSL S D
Sbjct: 1386 VLCVNPKKNLIELSLLPSDTGKPD 1409
Score = 50 (22.7 bits), Expect = 6.4e-53, Sum P(3) = 6.4e-53
Identities = 21/88 (23%), Positives = 37/88 (42%)
Query: 734 SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-------EHSDVYGFITHH-QLA 785
SK E+ +E G ++ G V VV+ +HS V ++ +L
Sbjct: 1313 SKIEDPEVNSIEDIQAGQLLRGYVKSILPSSVVIGLGPSVMGLVKHSHVSQCVSREKELY 1372
Query: 786 GATVESGSVIQAAILDVAKAERLVDLSL 813
+ G ++ A +L V + L++LSL
Sbjct: 1373 DKCLPEGKLVTARVLCVNPKKNLIELSL 1400
Score = 47 (21.6 bits), Expect = 8.9e-143, Sum P(4) = 8.9e-143
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 847 QTVNAIVEI--VKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVM 901
QTV ++ V + +L + + P+ I S + K P K+F GQ++ ATV+
Sbjct: 1155 QTVTCFLKKYNVMKKWLEVDIEPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQAIKATVV 1213
Score = 47 (21.6 bits), Expect = 8.0e-67, Sum P(4) = 8.0e-67
Identities = 25/100 (25%), Positives = 42/100 (42%)
Query: 688 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
+ N+ D+++E G + Q + T L EK +S K E+ +E
Sbjct: 29 QDNLFDISTEEGSVKRKKSQKGPAKTKK-------LKIEKRKSNKSMKEK-FEILSLESL 80
Query: 748 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA 787
G I G V E N+ +VVS + + GF+ ++ A
Sbjct: 81 CEGMRILGCVKEVNELELVVSLP--NGLQGFVQVTEICDA 118
Score = 46 (21.3 bits), Expect = 2.0e-64, Sum P(4) = 2.0e-64
Identities = 37/180 (20%), Positives = 73/180 (40%)
Query: 980 ENLFSNFKIGQTVTARIIA-KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1038
+N + FK+GQ +T + KSN + LS++ S ++ S EE ++
Sbjct: 227 KNKGAKFKVGQYLTCVVEELKSN------GGVVSLSVEHS-----QVSSAFATEEQSWNL 275
Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLF---ILDSAY-EPSELQEFQRRFHIGKAVTGH 1094
+ G V + + + L F ++D + EP ++ + + + V
Sbjct: 276 NNLLPGLVVRAQVQ-KVTQFGLQLNFLTFFTGLVDFMHLEPKKMGSYSSK----QTVKAC 330
Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRISKILSGV 1149
+L ++ +++RL LRP IS + T + + + G G I ++ GV
Sbjct: 331 ILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTVLDDASVEGFFEKAGAIFRLRDGV 390
Score = 42 (19.8 bits), Expect = 8.7e-52, Sum P(2) = 8.7e-52
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 122 GYILHFGLPSFTGFLPRNNLAENSGIDVKP 151
G+I GL S T LP + +S D +P
Sbjct: 1540 GFIWDVGLDSLTPALPLRGESSDSEEDEQP 1569
Score = 41 (19.5 bits), Expect = 1.1e-133, Sum P(3) = 1.1e-133
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
G+K KV +L VD K + + + A L+
Sbjct: 889 GQKKKVVVLHVDALKLEVHVSLHQDLVNRKARKLR 923
Score = 39 (18.8 bits), Expect = 6.1e-142, Sum P(4) = 6.1e-142
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1036 VSIGQRVTGYVYKVDNEWALLTI 1058
++IG +VTG + V A++T+
Sbjct: 1038 LAIGDKVTGTIKSVKATHAVVTL 1060
Score = 37 (18.1 bits), Expect = 1.8e-51, Sum P(3) = 1.8e-51
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
D++ G +++G V ++ ++ V L H+S+
Sbjct: 1325 DIQAGQLLRGYVKSILPSSVVIGLGPSVMGLVKHSHVSQ 1363
>MGI|MGI:1341788 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0043123 "positive
regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
Length = 1862
Score = 827 (296.2 bits), Expect = 3.0e-149, Sum P(4) = 3.0e-149
Identities = 258/931 (27%), Positives = 425/931 (45%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL---- 57
+++ GM++ G V EV+E +LV+ NE A E+ L
Sbjct: 78 ESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLL 137
Query: 58 -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVK 116
LP +F G LV C+V LD E GK+ + + ++ GM+LT V
Sbjct: 138 RLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVS 195
Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
S+EDHGY++ G+ FL E N G K G L VV + VV L
Sbjct: 196 SLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSL 255
Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
S + VS + + +++ L+PG++V +VQ + + G+ L+FLT+F G VD HL+
Sbjct: 256 SVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE- 314
Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
P Y+ ++ V A IL V P +R V L+L P LH P + + ++G + D
Sbjct: 315 --PKK--MGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDD 370
Query: 289 SKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
+ + AY +S +++ + + +K GS + RI+ + +
Sbjct: 371 VPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQM 427
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+ LA L+ S + D+K G VVKG V+A+ FG +V+ +K L P H+++
Sbjct: 428 DELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD 487
Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
+ P KK+ G E+ RVL ++K++ +T KKTLV SKL++++ Y A L THG
Sbjct: 488 IMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHG 547
Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
I +++ +GC V+FYN VQG P+ EL +P ++++ GQVVK ++S P+ R+
Sbjct: 548 VIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERML 607
Query: 527 LSF-MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGY--------SKGTIPTE 577
LSF ++ +R + G + +PT
Sbjct: 608 LSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHNTPAFLPTP 667
Query: 578 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIH 635
HL+DH + ++ ++ G ++L L ++LL K +L+++ + Q P S I
Sbjct: 668 HLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEIQ 727
Query: 636 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
P ++ G+V I E G FV+F L+G +P++ D S+ + GQ+V + + +V+
Sbjct: 728 PGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVD 787
Query: 696 SETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGS 751
R+ LSL+ S CS S SF+ LEE + + S L + + G
Sbjct: 788 ESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGM 847
Query: 752 VIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD 810
V++ VHE D VV S + D+ + + AG VE G + +L V + V
Sbjct: 848 VLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEVH 907
Query: 811 LSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNH 870
+SL ++R HQ IV+ ++E++ V SL E H
Sbjct: 908 VSLHQDLVNRKTRKLRKSSR---------------HQ---GIVQHLEESFAVASLVETGH 949
Query: 871 SIGYASVSDYN-TQKFPQKQFLNGQSVIATV 900
+ ++ +S N T F ++ GQ V T+
Sbjct: 950 LVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 980
Score = 602 (217.0 bits), Expect = 3.0e-149, Sum P(4) = 3.0e-149
Identities = 121/265 (45%), Positives = 170/265 (64%)
Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
P + D+F+RLV SSPNSS +W++YMAF L ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 1593 PESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 1652
Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
VA NLEN YG+ +E++ KVF+RA+QY +P KV L L +Y ++E+ K A EL +M+K
Sbjct: 1653 VALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKYKEAGELYNRMLK 1710
Query: 1664 KFKHSCKVWXXXXXXXXXXXXEGVQ-AVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
+F+ VW G V+QRAL LP +H+ I + A LEF+ G +R
Sbjct: 1711 RFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVER 1770
Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXYL 1782
+++FE LS YPKRTD+WS+Y+D I+ G +R +FER I YL
Sbjct: 1771 AKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIHLSLAPKRMKFFFKRYL 1830
Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1831 DYEKQHGTEKDVQAVKAKALEYVEA 1855
Score = 172 (65.6 bits), Expect = 5.4e-65, Sum P(3) = 5.4e-65
Identities = 48/168 (28%), Positives = 84/168 (50%)
Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
+ D+ +V+G V + G + + ++ V +L+D +++PEK++ G V
Sbjct: 446 RYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKC 505
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
RVL +P +K++ +TLK + T+ S I G G I RV+ YG + N
Sbjct: 506 RVLLCDPEAKKLIMTLKKT-LVTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN- 563
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
++ GL ELS H+ + ET++ G+ VKV +L + K R+ L +
Sbjct: 564 DVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611
Score = 128 (50.1 bits), Expect = 7.8e-144, Sum P(3) = 7.8e-144
Identities = 63/250 (25%), Positives = 109/250 (43%)
Query: 1087 IGKAVTGHV--LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1144
IG + G + L + K+L+ + FQ G + + + D + F+ I R+ +
Sbjct: 1181 IGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYRLEE 1240
Query: 1145 ILSGVGGLVVQIGPH--LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
+G V+++ P+ L F ++ + + Y E PL + + V+C +
Sbjct: 1241 GEVAMGR-VMKVVPNRGLTVSFPFGKIGKVSMFHLSDSYSEA---PLEDFCPQKIVRCYI 1296
Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
L + V + LSLRSS + N ++ P + IED+ +++GYVK
Sbjct: 1297 LSTAHRV-----LALSLRSSRTNRETKNR------IEDP--EINSIEDVKEGQLLRGYVK 1343
Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF-----PIGKLVAGRVLSVEPLSKR 1317
V I L + S++S+ PEKE P GKLV +VL V P+
Sbjct: 1344 CVLPSSVIIGLGPSVLGLAKYSHVSE--CVPPEKELYNGCLPEGKLVTAKVLRVNPMKNL 1401
Query: 1318 VEVTLKTSDS 1327
+E++L SD+
Sbjct: 1402 IELSLLPSDT 1411
Score = 117 (46.2 bits), Expect = 3.0e-149, Sum P(4) = 3.0e-149
Identities = 49/175 (28%), Positives = 83/175 (47%)
Query: 1251 LSPNMIVQGYV-KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
L + G V K V ++G + KV + +LSD Y E+P ++F K+V +L
Sbjct: 1238 LEEGEVAMGRVMKVVPNRGLTVSFPFGKIGKVSMFHLSDSYSEAPLEDFCPQKIVRCYIL 1297
Query: 1310 S----VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
S V LS R T + + +R EIN++ ++ G ++ G +K V + I +
Sbjct: 1298 STAHRVLALSLRSSRTNRETKNRI-EDPEINSIEDVKEGQLLRGYVKCVLPSSVIIGL-G 1355
Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRA----GEKVKVKILKVDKEKRRISLGMKSS 1416
+++GL S +SE V + +Y G+ V K+L+V+ K I L + S
Sbjct: 1356 PSVLGLAKYSHVSEC-VPPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPS 1409
Score = 112 (44.5 bits), Expect = 3.0e-149, Sum P(4) = 3.0e-149
Identities = 49/193 (25%), Positives = 91/193 (47%)
Query: 938 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
+G V I +K + + GF G IH + + DD V + + K G+ VTAR+I
Sbjct: 1046 IGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDDVP-VGTSPTTTLKAGKKVTARVI 1104
Query: 998 A----KSNK--PDMKKSF---LWELSIKPSML--TVSEIG--SKLLFEEC-DVSIGQRVT 1043
K++K P F + ELS++PS L + S + S+ E+ GQ VT
Sbjct: 1105 GGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTVT 1164
Query: 1044 GYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1101
+ Y V +W + I ++ ++ +L ++ L+ ++F +G+A+ V+ +
Sbjct: 1165 CFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVP 1224
Query: 1102 KKLLRL-VLRPFQ 1113
+ L L ++ P++
Sbjct: 1225 RAFLCLSLIGPYR 1237
Score = 107 (42.7 bits), Expect = 4.5e-64, Sum P(4) = 4.5e-64
Identities = 29/115 (25%), Positives = 56/115 (48%)
Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
T H L L S + L + V+ G+ + + ++ P M++ G+VK + G F+
Sbjct: 688 TLHRVLCLSQSERHILLCRKPALVSTVEG-GQDPKSLSEIQPGMLLIGFVKCIKEYGVFV 746
Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
L + +SD +V +P + F G+ V +V +V+ +R+ ++L+ SD
Sbjct: 747 QFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSD 801
Score = 102 (41.0 bits), Expect = 4.4e-58, Sum P(3) = 4.4e-58
Identities = 46/209 (22%), Positives = 89/209 (42%)
Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI---EDLSPNMIVQGYVKNVTSKGC 1269
F + +R + + T S S + K + K+ + L P M++ G V ++ G
Sbjct: 143 FSPGMLVRCVVSSLDVTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVSSLEDHGY 202
Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEK--EFPIGKLVAGRVLSVEPLSKRVEVTLKTSD- 1326
+ + L + Y+ K +F +G+ + V V+ V ++++ S+
Sbjct: 203 LVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSLSVEHSEV 262
Query: 1327 -SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
S A++ + NL+NL G +V Q+++V +GL + T GL L + +
Sbjct: 263 SSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFL-TFFKGLVDFMHLEPKKMGS- 320
Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
Y + + VK IL V R + L ++
Sbjct: 321 ---YSSNQTVKACILCVHPRTRVVRLSLR 346
Score = 99 (39.9 bits), Expect = 7.8e-58, Sum P(5) = 7.8e-58
Identities = 28/111 (25%), Positives = 55/111 (49%)
Query: 1307 RVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
RVL + + + + K + S + +LS + G ++IG +K ++ YG+F+ +
Sbjct: 691 RVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPS 750
Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
L GL + +S+ V + G+ V K+ VD+ K+R+ L ++ S
Sbjct: 751 -GLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLS 800
Score = 81 (33.6 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 60/236 (25%), Positives = 100/236 (42%)
Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG-------YDEGQFVKCKVLE 1204
LVV + L G V TE+ + + L+ Q +PL + G V+C V
Sbjct: 98 LVVSLPNGLQGFVQVTEVCD-AYTQKLNE-QVAQEEPLEDLLRLPELFSPGMLVRCVVSS 155
Query: 1205 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE-KIEDLSPNMIVQGYVKN 1263
+ T G V+LS+ N LS D PG L + L + GY+ +
Sbjct: 156 LDVTESGKKSVKLSVNPK-----RVNKV-LSADALRPGMLLTGTVSSLEDH----GYLVD 205
Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
+ G LS K A+ + + G +F +G+ + V V+ V ++++
Sbjct: 206 IGVGGTRAFLSLK-KAQEYIRQKNKG------AKFKVGQYLTCVVEEVKSNGGVVSLSVE 258
Query: 1324 TSD--SRTASQSEINNLSNLHVGDIVIGQIKRVESYGL---FITIENTNLVGLCHV 1374
S+ S A++ + NL+NL G +V Q+++V +GL F+T LV H+
Sbjct: 259 HSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFK-GLVDFMHL 313
Score = 76 (31.8 bits), Expect = 4.6e-94, Sum P(4) = 4.6e-94
Identities = 22/94 (23%), Positives = 40/94 (42%)
Query: 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
D R FE + + P + VW Y+ + R I ER + +++ + K
Sbjct: 1767 DVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIH-LSLAPKRMKF- 1824
Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
+ Y + E ++G + VK +AL+Y + K
Sbjct: 1825 FFKRYLDYEKQHGTEKDVQAVKA--KALEYVEAK 1856
Score = 76 (31.8 bits), Expect = 4.5e-64, Sum P(4) = 4.5e-64
Identities = 45/225 (20%), Positives = 91/225 (40%)
Query: 938 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
+G++V+ + IKP + +K G G + + D +++N + G V R++
Sbjct: 452 IGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADI---MMKNPEKKYSPGDEVKCRVL 508
Query: 998 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC--DVSIGQRVTGYVYKVDNEWAL 1055
P+ KK + ++K +++T SKL C G + G + +V + +
Sbjct: 509 LCD--PEAKKLIM---TLKKTLVT-----SKLSLITCYEGAKPGLQTHGVIIRVKDYGCI 558
Query: 1056 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1115
+ ++ + + + + F+ G+ V VLS K+ + L R D
Sbjct: 559 VKFYNDVQG--LVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLLSDS 616
Query: 1116 ISDKTVDISNDNMQT-FIHEGDIVGGRISKILSGVGGLVVQIGPH 1159
K + + +T + G +V ++ + GL V I PH
Sbjct: 617 -RPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKT--GLEVAILPH 658
Score = 75 (31.5 bits), Expect = 2.7e-58, Sum P(3) = 2.7e-58
Identities = 59/253 (23%), Positives = 105/253 (41%)
Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--FDPLSGYDEGQFVKCKVLEISRT 1208
G+ VQ L G T + + V+ P + EGQ ++ DE + L +S
Sbjct: 743 GVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDC 802
Query: 1209 VRG-----TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
G +F + L G+ S S+ S + T + D++P M++ V
Sbjct: 803 SLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQT-------LADMTPGMVLDAVVHE 855
Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
V G + S + VL ++ Y + ++ P G+ VL V+ L V V+L
Sbjct: 856 VLEDGSVVFSSDPVPDLVLRASR---YHRAGQEVEP-GQKKKVVVLHVDMLKLEVHVSLH 911
Query: 1324 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HV 1382
D ++ S+ H G ++ ++ ES+ + +E +LV +S L++ H
Sbjct: 912 -QDLVNRKTRKLRK-SSRHQG--IVQHLE--ESFAVASLVETGHLVAFSLISHLNDTFHF 965
Query: 1383 DNIETIYRAGEKV 1395
D+ E + R G+ V
Sbjct: 966 DS-EKL-RVGQGV 976
Score = 73 (30.8 bits), Expect = 4.9e-138, Sum P(3) = 4.9e-138
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKV 1397
+L +GD V G IK V++ + +T+ + VG H S + +D T +AG+KV
Sbjct: 1043 SLAIGDKVTGTIKAVKATHVVVTLAD-GFVGCIHASRILDDVPVGTSPTTTLKAGKKVTA 1101
Query: 1398 KIL 1400
+++
Sbjct: 1102 RVI 1104
Score = 72 (30.4 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 144 NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP------DTVSKCVTKDLKGISIDLLVPG 197
NS DVK G LL+G V+ + + ++ L VS+CV + K + L G
Sbjct: 1327 NSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECVPPE-KELYNGCLPEG 1385
Query: 198 MMVSTRVQSI--LENGVMLSFLTYFTGTVDIF 227
+V+ +V + ++N + LS L TG D+F
Sbjct: 1386 KLVTAKVLRVNPMKNLIELSLLPSDTGRPDVF 1417
Score = 69 (29.3 bits), Expect = 3.6e-137, Sum P(4) = 3.6e-137
Identities = 45/186 (24%), Positives = 75/186 (40%)
Query: 939 GSLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
G + + ++ P L + F G G++ + ++D S F KI V I+
Sbjct: 1241 GEVAMGRVMKVVPNRGLTVSFPFGKIGKVSMFHLSDSYSEAPLEDFCPQKI---VRCYIL 1297
Query: 998 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEW 1053
+ +++ + LS++ S T E +++ E DV GQ + GYV V
Sbjct: 1298 STAHR-------VLALSLRSSR-TNRETKNRIEDPEINSIEDVKEGQLLRGYVKCVLPSS 1349
Query: 1054 ALLTISRH-LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
++ + L + S P E + + GK VT VL +N K L+ L L P
Sbjct: 1350 VIIGLGPSVLGLAKYSHVSECVPPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPS 1409
Query: 1113 QDGISD 1118
G D
Sbjct: 1410 DTGRPD 1415
Score = 62 (26.9 bits), Expect = 5.8e-53, Sum P(3) = 5.8e-53
Identities = 16/71 (22%), Positives = 36/71 (50%)
Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
+K++++ + S + EI +L +L G ++G +K V L +++ N L G V
Sbjct: 54 TKKLKIEKRKSIKSIKEKFEILSLESLCEGMRILGCVKEVSELELVVSLPN-GLQGFVQV 112
Query: 1375 SELSEDHVDNI 1385
+E+ + + +
Sbjct: 113 TEVCDAYTQKL 123
Score = 60 (26.2 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 39/174 (22%), Positives = 73/174 (41%)
Query: 105 VQEGMVLTAYV-KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS-- 161
++EG V V K + + G + F G + +L+++ Q +VR
Sbjct: 1238 LEEGEVAMGRVMKVVPNRGLTVSFPFGKI-GKVSMFHLSDSYSEAPLEDFCPQKIVRCYI 1296
Query: 162 IDRTRKVVYLS---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
+ +V+ LS S + +K +D + SI+ + G ++ V+ +L + V++
Sbjct: 1297 LSTAHRVLALSLRSSRTNRETKNRIEDPEINSIEDVKEGQLLRGYVKCVLPSSVIIGLGP 1356
Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYN----QHKKVNARILFVDPTSRAVGLTLNP 268
G H+ P K YN + K V A++L V+P + L+L P
Sbjct: 1357 SVLGLAKYSHVSECVPPE--KELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLP 1408
Score = 57 (25.1 bits), Expect = 7.3e-53, Sum P(3) = 7.3e-53
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE 143
E V+EG +L YVK + I+ G PS G ++++E
Sbjct: 1330 EDVKEGQLLRGYVKCVLPSSVIIGLG-PSVLGLAKYSHVSE 1369
Score = 56 (24.8 bits), Expect = 4.3e-67, Sum P(4) = 4.3e-67
Identities = 51/253 (20%), Positives = 94/253 (37%)
Query: 710 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
C D S M E LL + +++ + ++K IG+V++G V FG++V
Sbjct: 419 CRIIDYSQMDELALLSLRKSIIAAPFLRYHDIK------IGTVVKGTVLAIKPFGILVKV 472
Query: 770 EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXX 829
E + G + LA +++ + +V L D K + + ++
Sbjct: 473 GEQ--IKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMT-LKKTLVTSK 529
Query: 830 XXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 889
L QT I+ VK+ ++ YN G + +TQ P +
Sbjct: 530 LSLITCYEGAKPGL---QTHGVIIR-VKDYGCIVKF--YNDVQGLVPKHELSTQHIPDPE 583
Query: 890 --FLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEIT 947
F GQ V V++ S R+LL + + G++ ++
Sbjct: 584 TVFYTGQVVKVAVLSCEPSKE--RMLLSFRLLSDSRPKDPGVESSQKK--TGAVRIGQLV 639
Query: 948 EIKPLELRLKFGI 960
++K LE + K G+
Sbjct: 640 DVKVLE-KTKTGL 651
Score = 56 (24.8 bits), Expect = 3.6e-53, Sum P(3) = 3.6e-53
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
DVK G +++G V V I+ V L H+SE V P K+ G ++
Sbjct: 1331 DVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSE--CVPPEKELYNGCLPEGKL- 1387
Query: 430 GVKSKRITVTHKKTLVKSKLAILSS 454
V +K + V K L++ L++L S
Sbjct: 1388 -VTAKVLRVNPMKNLIE--LSLLPS 1409
Score = 54 (24.1 bits), Expect = 4.0e-52, Sum P(3) = 4.0e-52
Identities = 29/130 (22%), Positives = 53/130 (40%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV----ESPEKEFPIGKL 1303
+E L M + G VK V+ + L L V ++ + D Y E +E P+ L
Sbjct: 77 LESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDL 136
Query: 1304 VA-GRVLSVEPLSKRVEVTLKTSDSRTAS------QSEINNLSN---LHVGDIVIGQIKR 1353
+ + S L + V +L ++S S +N + + L G ++ G +
Sbjct: 137 LRLPELFSPGMLVRCVVSSLDVTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVSS 196
Query: 1354 VESYGLFITI 1363
+E +G + I
Sbjct: 197 LEDHGYLVDI 206
Score = 53 (23.7 bits), Expect = 8.9e-67, Sum P(4) = 8.9e-67
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 853 VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 912
V+ +KE + + P + ++ P + F+ GQ+V+A V + S R+
Sbjct: 736 VKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQ--RM 793
Query: 913 LLLLK 917
LL L+
Sbjct: 794 LLSLR 798
Score = 53 (23.7 bits), Expect = 1.3e-61, Sum P(6) = 1.3e-61
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
G +V G + I G++V++G + G V L +I + +P Y G DE
Sbjct: 453 GTVVKGTVLAIKPF--GILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPG--------DE 502
Query: 1195 GQFVKCKVL 1203
VKC+VL
Sbjct: 503 ---VKCRVL 508
Score = 47 (21.6 bits), Expect = 8.5e-65, Sum P(4) = 8.5e-65
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 946 ITEIKPLELRLKFGIGFHGRIHITEVND 973
+ E+ LEL + G G + +TEV D
Sbjct: 90 VKEVSELELVVSLPNGLQGFVQVTEVCD 117
Score = 46 (21.3 bits), Expect = 4.5e-59, Sum P(4) = 4.5e-59
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 316 TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA---TGILKASAFEGLVFTHSDVK 372
T+ D EE+ + E++ KE + V+ RH + TG +KA +V T +D
Sbjct: 1012 TVDDKGEEKEEEEEEEEKEEENLTVKSKK-RHSLAIGDKVTGTIKAVKATHVVVTLADGF 1070
Query: 373 PGMVVKGKVI 382
G + +++
Sbjct: 1071 VGCIHASRIL 1080
Score = 45 (20.9 bits), Expect = 3.3e-142, Sum P(4) = 3.3e-142
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 880 YNTQKFPQKQFLNGQSVIATVM 901
+ K P K+F GQ++ ATV+
Sbjct: 1198 FKVLKHPDKKFQVGQAIEATVV 1219
Score = 44 (20.5 bits), Expect = 8.5e-65, Sum P(4) = 8.5e-65
Identities = 30/137 (21%), Positives = 58/137 (42%)
Query: 980 ENLFSNFKIGQTVTARII-AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1038
+N + FK+GQ +T + KSN + LS++ S E+ S EE ++
Sbjct: 227 KNKGAKFKVGQYLTCVVEEVKSN------GGVVSLSVEHS-----EVSSAFATEEQSWNL 275
Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLF---ILDSAY-EPSELQEFQRRFHIGKAVTGH 1094
+ G + K + + L F ++D + EP ++ + + V
Sbjct: 276 NNLLPGLLVKAQVQ-KVTQFGLQLNFLTFFKGLVDFMHLEPKKMGSYSSN----QTVKAC 330
Query: 1095 VLSINKEKKLLRLVLRP 1111
+L ++ +++RL LRP
Sbjct: 331 ILCVHPRTRVVRLSLRP 347
Score = 43 (20.2 bits), Expect = 5.4e-65, Sum P(3) = 5.4e-65
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 939 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
G LV+A++ ++ L+L F F G + + K ++ QTV A I+
Sbjct: 281 GLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLEPKK-------MGSYSSNQTVKACIL 332
Score = 42 (19.8 bits), Expect = 7.3e-53, Sum P(3) = 7.3e-53
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 783 QLAGATVESGSVIQAAILDVAKAERLVDLSL 813
+L + G ++ A +L V + L++LSL
Sbjct: 1376 ELYNGCLPEGKLVTAKVLRVNPMKNLIELSL 1406
Score = 41 (19.5 bits), Expect = 1.2e-58, Sum P(4) = 1.2e-58
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 679 KTYYVGQSVRSNILDVNSETGRITLSL 705
K + VGQ++ + ++D + + LSL
Sbjct: 1206 KKFQVGQAIEATVVDPDVPRAFLCLSL 1232
Score = 38 (18.4 bits), Expect = 1.8e-141, Sum P(4) = 1.8e-141
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 1152 LVVQIGPHLYGRVHF--TELKNICVSDPLSGYDEGQ 1185
L V IGP + GR+ T L + P + GQ
Sbjct: 1177 LEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQ 1212
Score = 38 (18.4 bits), Expect = 2.4e-134, Sum P(3) = 2.4e-134
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
+G + A R+L P+ TLK TA
Sbjct: 1071 VGCIHASRILDDVPVGTSPTTTLKAGKKVTA 1101
Score = 38 (18.4 bits), Expect = 5.2e-58, Sum P(6) = 5.2e-58
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 1392 GEKVKVKILKVDKEKRRISLGM 1413
G+K KV +L VD K + + +
Sbjct: 889 GQKKKVVVLHVDMLKLEVHVSL 910
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 952 (340.2 bits), Expect = 3.9e-148, Sum P(3) = 3.9e-148
Identities = 371/1387 (26%), Positives = 612/1387 (44%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL---- 57
+++ GM++ G V EVNE +L I + NE A E+ L
Sbjct: 78 ESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQDLV 137
Query: 58 -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVK 116
LP +F G LV C+V LD K K+ + ET++ GM+LT V
Sbjct: 138 GLPELFSPGMLVRCVVSSLDTTKGS--KKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVS 195
Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
S+EDHGY++ G+ FLP E N G +K G L ++ + +R VV L
Sbjct: 196 SLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGVVTL 255
Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
S VS + + + +++ L+PG++V +VQ + G+ L FL++F+G VD HL
Sbjct: 256 SIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDP 315
Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
T + N ++V A +L V P +RAV L+L P L P + + ++G + D
Sbjct: 316 KKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAVLDD 370
Query: 289 SKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
+ T AY + ++ + + +K G+ + RI+ + +
Sbjct: 371 VPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDYSQM 427
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+ LA L+ S E + D+KPG +VKGKV+ + G +V+ ++ L P H+++
Sbjct: 428 DELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD 487
Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
I P KK+ VG E+ RVL K+K++ +T KKTLV+SKL ++ Y +A L THG
Sbjct: 488 ILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHG 547
Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
+I +++ +GC V+FYN VQG PR EL + +P S+++ GQVVK +++ P+ R+
Sbjct: 548 FILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERML 607
Query: 527 LSFMM--KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX-----XIAKGYSKGTIPTEHL 579
LSF + P + E + G +PT HL
Sbjct: 608 LSFRLLSDPKQEGEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPTAHL 667
Query: 580 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPN 637
+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P S IHP
Sbjct: 668 SDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEIHPG 727
Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
++ G+V NI + G FV+F L+G AP++ D S + GQ+V + + +V+ E
Sbjct: 728 MLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEE 787
Query: 698 TGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVI 753
R+ LSL+ S C+ D S + LEE+ + + S L + + G +
Sbjct: 788 KQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMAL 847
Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVD 810
+ +V E + G V+ F E V G + + + AG +E G +A IL+V + V
Sbjct: 848 DLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKLEVH 905
Query: 811 LSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNH 870
+SL ++R DL AIV+ ++E++ V SL E H
Sbjct: 906 VSLCHDLVNR------------KAKKLKKGSDL------QAIVQHLEESFAVASLVETGH 947
Query: 871 SIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXXXXXX 925
++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 948 LAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVT-GLLLAIEGPAAKRTMRQTRK 1006
Query: 926 XXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 971
D +G +V + IKP + + G G IH + +
Sbjct: 1007 DSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHASHI 1066
Query: 972 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL-- 1029
DD V + + K+G+ VTAR+I DMK +S + T+ E+ +
Sbjct: 1067 LDDVP-VGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSE 1122
Query: 1030 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1089
L E+ ++ + K+ T++ LK + + E +F+ R +
Sbjct: 1123 LKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKKSIMV-KKWLEVEIAPDFRGRIPL-- 1179
Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDK-TVDISNDNMQTFI-------HE---GDIV 1138
+T LS K+L+ + FQ G + K TV ++ + F+ H+ G++
Sbjct: 1180 LLTS--LSF----KVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHKLKKGEVA 1233
Query: 1139 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1198
GR+ K+ + GL V P +GRV + + VSD Y E L + Q V
Sbjct: 1234 MGRVVKV-TPKEGLTVSF-P--FGRVGRVSMFH--VSD---SYSETH---LEDFVPQQVV 1281
Query: 1199 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1258
+C VL + V + LSLRSS TN S D P + IEDL +++
Sbjct: 1282 RCYVLSAATPV-----LTLSLRSS-----RTNPETKSKITD-P--EINSIEDLEEGQLLR 1328
Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLVAGRVLSVEPLS 1315
G+VK+V G + L + ++S + +P ++ P GKL+ +VL +
Sbjct: 1329 GFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLRLNHQE 1388
Query: 1316 KRVEVTL 1322
VE++L
Sbjct: 1389 SLVELSL 1395
Score = 591 (213.1 bits), Expect = 3.9e-148, Sum P(3) = 3.9e-148
Identities = 120/265 (45%), Positives = 172/265 (64%)
Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
P + ++F+RLV SSP+SS +W++YMAF L ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 1605 PESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 1664
Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
VA NLEN YG+ +E++ KVF+RA+QY +P KV L L +Y ++E+ + A EL +M+K
Sbjct: 1665 VALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLK 1722
Query: 1664 KFKHSCKVWXXXXXXXXXXX-XEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
+F+ VW E V+QRAL LP+ +H+ I++ A LEF+ G A+R
Sbjct: 1723 RFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAER 1782
Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXYL 1782
R++FE LS YPKRTD+WS+Y+D I+ G R +FER I YL
Sbjct: 1783 ARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFFKRYL 1842
Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1843 DYEKQHGSEKDVQAVKAKALEYVEA 1867
Score = 180 (68.4 bits), Expect = 8.9e-66, Sum P(2) = 8.9e-66
Identities = 47/168 (27%), Positives = 91/168 (54%)
Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
D+ P +V+G V + G + + +++ V +L+D +++PEK++ +G V RVL
Sbjct: 449 DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508
Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1366
+P +K++ +TLK +T +S++ ++ + G G I RV+ YG + N
Sbjct: 509 LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 563
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
++ GL ELS ++V + E+++ G+ VKV +L + K R+ L +
Sbjct: 564 DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 611
Score = 131 (51.2 bits), Expect = 7.2e-59, Sum P(3) = 7.2e-59
Identities = 41/164 (25%), Positives = 73/164 (44%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
+D P + G++ V GC + + V LS YV PE F G++V V
Sbjct: 537 DDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVV 596
Query: 1309 LSVEPLSKRVEVTLKT-SDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIENT 1366
L+ EP +R+ ++ + SD + + + + G +V ++ GL + +
Sbjct: 597 LNCEPSKERMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPH 656
Query: 1367 NLVGLCHVSELSEDHVDNIETIY---RAGEKV-KVKILKVDKEK 1406
N+ G + LS DHV N +Y + G+ + +V L V +E+
Sbjct: 657 NIPGFLPTAHLS-DHVTNGPLLYHWLQTGDTLHRVLCLSVSEER 699
Score = 124 (48.7 bits), Expect = 7.0e-60, Sum P(2) = 7.0e-60
Identities = 45/179 (25%), Positives = 82/179 (45%)
Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEF 1298
G+ +K + +S +V V T G + +L + + ++LSD P
Sbjct: 622 GQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPTAHLSDHVTNGPLLYHWL 681
Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1357
G + RVL + +RV + K + S + S +H G ++IG +K ++ Y
Sbjct: 682 QTGDTLH-RVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDY 740
Query: 1358 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
G+F+ + L GL + LS+ V + + G+ V K+ VD+EK+R+ L ++ S
Sbjct: 741 GVFVQFPS-GLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLS 798
Score = 112 (44.5 bits), Expect = 6.3e-58, Sum P(3) = 6.3e-58
Identities = 31/115 (26%), Positives = 56/115 (48%)
Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
T H L L S + + L + V+ G++ + ++ P M++ G+VKN+ G F+
Sbjct: 686 TLHRVLCLSVSEERVLLCRKPALVSAVEG-GQNPKSFSEIHPGMLLIGFVKNIKDYGVFV 744
Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
L + LSD +V S F G+ V +V +V+ +R+ ++L+ SD
Sbjct: 745 QFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 799
Score = 109 (43.4 bits), Expect = 2.7e-58, Sum P(2) = 2.7e-58
Identities = 49/209 (23%), Positives = 101/209 (48%)
Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK-GCFI 1271
F + +L++++ G + ++ + L + P K L+K E + G V VT K G +
Sbjct: 1196 FQIGQALKATVVGPAESSKAFLCLSLIGPHK-LKKGE------VAMGRVVKVTPKEGLTV 1248
Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS----VEPLSKRVEVTLKTSDS 1327
+V + ++SD Y E+ ++F ++V VLS V LS R T + S
Sbjct: 1249 SFPFGRVGRVSMFHVSDSYSETHLEDFVPQQVVRCYVLSAATPVLTLSLRSSRTNPETKS 1308
Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDHVDN 1384
+ + EIN++ +L G ++ G +K V+ G+ + + ++ GL HVS+ ++
Sbjct: 1309 KI-TDPEINSIEDLEEGQLLRGFVKSVQPSGVLVGL-GPSVTGLARHPHVSQHNQSKNAP 1366
Query: 1385 IETIYRAGEKVKVKILKVDKEKRRISLGM 1413
+ G+ + K+L+++ ++ + L +
Sbjct: 1367 YDRHLPEGKLLTAKVLRLNHQESLVELSL 1395
Score = 89 (36.4 bits), Expect = 3.4e-56, Sum P(2) = 3.4e-56
Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 1304 VAGRVLSVE-PLSKRVEVTLKTSDSRTASQSE-------INNLSN--LHVGDIVIGQIKR 1353
V G +L++E P +KR + DS T + E + + L +GD+V G +K
Sbjct: 985 VTGLLLAIEGPAAKRT-MRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKS 1043
Query: 1354 VESYGLFITIENTNLVGLCHVSELSED-HVDNIETI-YRAGEKVKVKIL 1400
++ + +T+E+ ++G H S + +D V T + G+KV +++
Sbjct: 1044 IKPTHVVVTLED-GIIGCIHASHILDDVPVGTSPTAKLKVGKKVTARVI 1091
Score = 89 (36.4 bits), Expect = 1.6e-55, Sum P(3) = 1.6e-55
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF-----LPRNNLAENSGID--VKPGLLL 155
E ++EG +L +VKS++ G ++ G PS TG + ++N ++N+ D + G LL
Sbjct: 1319 EDLEEGQLLRGFVKSVQPSGVLVGLG-PSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLL 1377
Query: 156 QGVVRSIDRTRKVVYLSSDPDTVSK 180
V ++ +V LS PD K
Sbjct: 1378 TAKVLRLNHQESLVELSLLPDATGK 1402
Score = 87 (35.7 bits), Expect = 4.4e-95, Sum P(3) = 4.4e-95
Identities = 24/94 (25%), Positives = 46/94 (48%)
Query: 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
DA R FE + P + VW Y+ ++ ++AR+I ER + +++ + K
Sbjct: 1779 DAERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIH-LSLAPKRMKF- 1836
Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
+ Y + E ++G+ + VK +AL+Y + K
Sbjct: 1837 FFKRYLDYEKQHGSEKDVQAVKA--KALEYVEAK 1868
Score = 70 (29.7 bits), Expect = 1.6e-53, Sum P(3) = 1.6e-53
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
+K+++V + S + EI N+ +L G ++G +K V L I++ N L G V
Sbjct: 54 TKKLKVETRQSSKFVREKFEILNVESLCEGMRILGCVKEVNELELAISLPN-GLQGYVQV 112
Query: 1375 SELSEDHVDNI 1385
+E+ + + + +
Sbjct: 113 TEICDAYTEKL 123
Score = 58 (25.5 bits), Expect = 2.8e-52, Sum P(3) = 2.8e-52
Identities = 30/130 (23%), Positives = 51/130 (39%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK----EFPIGKL 1303
+E L M + G VK V I L L V ++ + D Y E + E P+ L
Sbjct: 77 VESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQDL 136
Query: 1304 VA-GRVLSVEPLSKRVEVTLKTSDSR------TASQSEINNL---SNLHVGDIVIGQIKR 1353
V + S L + V +L T+ + + +N + L G ++ G +
Sbjct: 137 VGLPELFSPGMLVRCVVSSLDTTKGSKKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVSS 196
Query: 1354 VESYGLFITI 1363
+E +G + I
Sbjct: 197 LEDHGYLVDI 206
Score = 47 (21.6 bits), Expect = 3.9e-148, Sum P(3) = 3.9e-148
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEK 1406
LSE+ +E YR GE+ + ++ + KEK
Sbjct: 1495 LSEEDDSGVEVYYREGEEAE-EMSMLPKEK 1523
Score = 42 (19.8 bits), Expect = 3.0e-51, Sum P(2) = 3.0e-51
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 122 GYILHFGLPSFTGFLPRNNLAENSGIDVKP 151
G++ GL + T LP + + +S D KP
Sbjct: 1538 GFVWDVGLDTLTPALPPHGDSSDSEEDEKP 1567
Score = 37 (18.1 bits), Expect = 7.2e-59, Sum P(3) = 7.2e-59
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
G+K K IL VD K + + + A L+
Sbjct: 887 GQKKKAVILNVDMLKLEVHVSLCHDLVNRKAKKLK 921
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 942 (336.7 bits), Expect = 5.3e-147, Sum P(3) = 5.3e-147
Identities = 370/1387 (26%), Positives = 612/1387 (44%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL---- 57
+++ GM++ G V EVNE +L I + NE A E+ L
Sbjct: 78 ESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQDLV 137
Query: 58 -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVK 116
LP +F G LV C+V LD K K+ + ET++ GM+LT V
Sbjct: 138 GLPELFSPGMLVRCVVSSLDTTKGS--KKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVS 195
Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
S+EDHGY++ G+ FLP E N G +K G L ++ + +R VV L
Sbjct: 196 SLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGVVTL 255
Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
S VS + + + +++ L+PG++V +VQ + G+ L FL++F+G VD HL
Sbjct: 256 SIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDP 315
Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
T + N ++V A +L V P +RAV L+L P L P + + ++G + D
Sbjct: 316 KKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAVLDD 370
Query: 289 SKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
+ T AY + ++ + + +K G+ + RI+ + +
Sbjct: 371 VPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDYSQM 427
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+ LA L+ S E + D+KPG +VKGKV+ + G +V+ ++ L P H+++
Sbjct: 428 DELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD 487
Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
I P KK+ VG E+ RVL K+K++ +T KKTLV+SKL ++ Y +A L THG
Sbjct: 488 ILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHG 547
Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
+I +++ +GC V+FYN VQG PR EL + +P S+++ GQVVK +++ P+ R+
Sbjct: 548 FILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERML 607
Query: 527 LSFMM--KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX-----XIAKGYSKGTIPTEHL 579
LSF + P + E + G +PT HL
Sbjct: 608 LSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFLPTAHL 667
Query: 580 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPN 637
+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P S IHP
Sbjct: 668 SDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEIHPG 727
Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
++ G+V NI + G FV+F L+G AP++ D S + GQ+V + + +V+ E
Sbjct: 728 MLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEE 787
Query: 698 TGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVI 753
R+ LSL+ S C+ D S + LEE+ + + S L + + G +
Sbjct: 788 KQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMAL 847
Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVD 810
+ +V E + G V+ F E V G + + + AG +E G +A IL+V + V
Sbjct: 848 DLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKLEVH 905
Query: 811 LSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNH 870
+SL ++R DL AIV+ ++E++ V SL E H
Sbjct: 906 VSLCHDLVNR------------KAKKLKKGSDL------QAIVQHLEESFAVASLVETGH 947
Query: 871 SIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXXXXXX 925
++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 948 LAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVT-GLLLAIEGPAAKRTMRQTRK 1006
Query: 926 XXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 971
D +G +V + IKP + + G G IH + +
Sbjct: 1007 DSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHASHI 1066
Query: 972 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL-- 1029
DD V + + K+G+ VTAR+I DMK +S + T+ E+ +
Sbjct: 1067 LDDVP-VGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSE 1122
Query: 1030 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1089
L E+ ++ + K+ T++ LK + ++ E + + R +
Sbjct: 1123 LKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLK-KYNMVKKWLEVEIAPDIRGRIPL-- 1179
Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDK-TVDISNDNMQTFI-------HE---GDIV 1138
+T LS K+L+ + FQ G + K TV ++ + F+ H+ G++
Sbjct: 1180 LLTS--LSF----KVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHKLKKGEVA 1233
Query: 1139 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1198
GR+ K+ + GL V P +GRV + + VSD Y E L + Q V
Sbjct: 1234 MGRVVKV-TPKEGLTVSF-P--FGRVGRVSMFH--VSD---SYSETH---LEDFVPQQVV 1281
Query: 1199 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1258
+C VL + V + LSLRSS TN S D P + IEDL +++
Sbjct: 1282 RCYVLSAATPV-----LTLSLRSS-----RTNPETKSKITD-P--EINSIEDLEEGQLLR 1328
Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLVAGRVLSVEPLS 1315
G+VK+V G + L + ++S + +P ++ P GKL+ +VL +
Sbjct: 1329 GFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLRLNHQE 1388
Query: 1316 KRVEVTL 1322
VE++L
Sbjct: 1389 SLVELSL 1395
Score = 591 (213.1 bits), Expect = 5.3e-147, Sum P(3) = 5.3e-147
Identities = 120/265 (45%), Positives = 172/265 (64%)
Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
P + ++F+RLV SSP+SS +W++YMAF L ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 1605 PESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 1664
Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
VA NLEN YG+ +E++ KVF+RA+QY +P KV L L +Y ++E+ + A EL +M+K
Sbjct: 1665 VALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLK 1722
Query: 1664 KFKHSCKVWXXXXXXXXXXX-XEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
+F+ VW E V+QRAL LP+ +H+ I++ A LEF+ G A+R
Sbjct: 1723 RFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAER 1782
Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXYL 1782
R++FE LS YPKRTD+WS+Y+D I+ G R +FER I YL
Sbjct: 1783 ARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFFKRYL 1842
Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1843 DYEKQHGSEKDVQAVKAKALEYVEA 1867
Score = 180 (68.4 bits), Expect = 8.9e-66, Sum P(2) = 8.9e-66
Identities = 47/168 (27%), Positives = 91/168 (54%)
Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
D+ P +V+G V + G + + +++ V +L+D +++PEK++ +G V RVL
Sbjct: 449 DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508
Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1366
+P +K++ +TLK +T +S++ ++ + G G I RV+ YG + N
Sbjct: 509 LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 563
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
++ GL ELS ++V + E+++ G+ VKV +L + K R+ L +
Sbjct: 564 DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 611
Score = 127 (49.8 bits), Expect = 1.9e-58, Sum P(3) = 1.9e-58
Identities = 40/164 (24%), Positives = 72/164 (43%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
+D P + G++ V GC + + V LS YV PE F G++V V
Sbjct: 537 DDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVV 596
Query: 1309 LSVEPLSKRVEVTLKT-SDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIENT 1366
L+ EP +R+ ++ + SD + + + + G + ++ GL + +
Sbjct: 597 LNCEPSKERMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPH 656
Query: 1367 NLVGLCHVSELSEDHVDNIETIY---RAGEKV-KVKILKVDKEK 1406
N+ G + LS DHV N +Y + G+ + +V L V +E+
Sbjct: 657 NIPGFLPTAHLS-DHVTNGPLLYHWLQTGDTLHRVLCLSVSEER 699
Score = 120 (47.3 bits), Expect = 1.9e-59, Sum P(2) = 1.9e-59
Identities = 44/179 (24%), Positives = 81/179 (45%)
Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEF 1298
G+ +K + +S + V T G + +L + + ++LSD P
Sbjct: 622 GQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFLPTAHLSDHVTNGPLLYHWL 681
Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1357
G + RVL + +RV + K + S + S +H G ++IG +K ++ Y
Sbjct: 682 QTGDTLH-RVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDY 740
Query: 1358 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
G+F+ + L GL + LS+ V + + G+ V K+ VD+EK+R+ L ++ S
Sbjct: 741 GVFVQFPS-GLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLS 798
Score = 112 (44.5 bits), Expect = 6.3e-58, Sum P(3) = 6.3e-58
Identities = 31/115 (26%), Positives = 56/115 (48%)
Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
T H L L S + + L + V+ G++ + ++ P M++ G+VKN+ G F+
Sbjct: 686 TLHRVLCLSVSEERVLLCRKPALVSAVEG-GQNPKSFSEIHPGMLLIGFVKNIKDYGVFV 744
Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
L + LSD +V S F G+ V +V +V+ +R+ ++L+ SD
Sbjct: 745 QFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 799
Score = 109 (43.4 bits), Expect = 2.7e-58, Sum P(2) = 2.7e-58
Identities = 49/209 (23%), Positives = 101/209 (48%)
Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK-GCFI 1271
F + +L++++ G + ++ + L + P K L+K E + G V VT K G +
Sbjct: 1196 FQIGQALKATVVGPAESSKAFLCLSLIGPHK-LKKGE------VAMGRVVKVTPKEGLTV 1248
Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS----VEPLSKRVEVTLKTSDS 1327
+V + ++SD Y E+ ++F ++V VLS V LS R T + S
Sbjct: 1249 SFPFGRVGRVSMFHVSDSYSETHLEDFVPQQVVRCYVLSAATPVLTLSLRSSRTNPETKS 1308
Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDHVDN 1384
+ + EIN++ +L G ++ G +K V+ G+ + + ++ GL HVS+ ++
Sbjct: 1309 KI-TDPEINSIEDLEEGQLLRGFVKSVQPSGVLVGL-GPSVTGLARHPHVSQHNQSKNAP 1366
Query: 1385 IETIYRAGEKVKVKILKVDKEKRRISLGM 1413
+ G+ + K+L+++ ++ + L +
Sbjct: 1367 YDRHLPEGKLLTAKVLRLNHQESLVELSL 1395
Score = 89 (36.4 bits), Expect = 3.4e-56, Sum P(2) = 3.4e-56
Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 1304 VAGRVLSVE-PLSKRVEVTLKTSDSRTASQSE-------INNLSN--LHVGDIVIGQIKR 1353
V G +L++E P +KR + DS T + E + + L +GD+V G +K
Sbjct: 985 VTGLLLAIEGPAAKRT-MRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKS 1043
Query: 1354 VESYGLFITIENTNLVGLCHVSELSED-HVDNIETI-YRAGEKVKVKIL 1400
++ + +T+E+ ++G H S + +D V T + G+KV +++
Sbjct: 1044 IKPTHVVVTLED-GIIGCIHASHILDDVPVGTSPTAKLKVGKKVTARVI 1091
Score = 89 (36.4 bits), Expect = 1.6e-55, Sum P(3) = 1.6e-55
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF-----LPRNNLAENSGID--VKPGLLL 155
E ++EG +L +VKS++ G ++ G PS TG + ++N ++N+ D + G LL
Sbjct: 1319 EDLEEGQLLRGFVKSVQPSGVLVGLG-PSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLL 1377
Query: 156 QGVVRSIDRTRKVVYLSSDPDTVSK 180
V ++ +V LS PD K
Sbjct: 1378 TAKVLRLNHQESLVELSLLPDATGK 1402
Score = 87 (35.7 bits), Expect = 5.9e-94, Sum P(3) = 5.9e-94
Identities = 24/94 (25%), Positives = 46/94 (48%)
Query: 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
DA R FE + P + VW Y+ ++ ++AR+I ER + +++ + K
Sbjct: 1779 DAERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIH-LSLAPKRMKF- 1836
Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
+ Y + E ++G+ + VK +AL+Y + K
Sbjct: 1837 FFKRYLDYEKQHGSEKDVQAVKA--KALEYVEAK 1868
Score = 70 (29.7 bits), Expect = 1.6e-53, Sum P(3) = 1.6e-53
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
+K+++V + S + EI N+ +L G ++G +K V L I++ N L G V
Sbjct: 54 TKKLKVETRQSSKFVREKFEILNVESLCEGMRILGCVKEVNELELAISLPN-GLQGYVQV 112
Query: 1375 SELSEDHVDNI 1385
+E+ + + + +
Sbjct: 113 TEICDAYTEKL 123
Score = 58 (25.5 bits), Expect = 2.8e-52, Sum P(3) = 2.8e-52
Identities = 30/130 (23%), Positives = 51/130 (39%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK----EFPIGKL 1303
+E L M + G VK V I L L V ++ + D Y E + E P+ L
Sbjct: 77 VESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQDL 136
Query: 1304 VA-GRVLSVEPLSKRVEVTLKTSDSR------TASQSEINNL---SNLHVGDIVIGQIKR 1353
V + S L + V +L T+ + + +N + L G ++ G +
Sbjct: 137 VGLPELFSPGMLVRCVVSSLDTTKGSKKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVSS 196
Query: 1354 VESYGLFITI 1363
+E +G + I
Sbjct: 197 LEDHGYLVDI 206
Score = 47 (21.6 bits), Expect = 5.3e-147, Sum P(3) = 5.3e-147
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEK 1406
LSE+ +E YR GE+ + ++ + KEK
Sbjct: 1495 LSEEDDSGVEVYYREGEEAE-EMSMLPKEK 1523
Score = 42 (19.8 bits), Expect = 3.0e-51, Sum P(2) = 3.0e-51
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 122 GYILHFGLPSFTGFLPRNNLAENSGIDVKP 151
G++ GL + T LP + + +S D KP
Sbjct: 1538 GFVWDVGLDTLTPALPPHGDSSDSEEDEKP 1567
Score = 37 (18.1 bits), Expect = 1.9e-58, Sum P(3) = 1.9e-58
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
G+K K IL VD K + + + A L+
Sbjct: 887 GQKKKAVILNVDMLKLEVHVSLCHDLVNRKAKKLK 921
>UNIPROTKB|F1PLK8 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 GO:GO:0006397 GO:GO:0003723
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 CTD:22984
KO:K14792 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:AAEX03015497 EMBL:AAEX03015498 RefSeq:XP_535003.3
Ensembl:ENSCAFT00000016578 GeneID:477810 KEGG:cfa:477810
Uniprot:F1PLK8
Length = 1870
Score = 925 (330.7 bits), Expect = 4.9e-146, Sum P(3) = 4.9e-146
Identities = 364/1396 (26%), Positives = 618/1396 (44%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL---- 57
+++ GM++ G V EV+E +LVI + NE A E+ L
Sbjct: 75 ESLREGMRILGCVKEVHELELVISLPNGLQGFVQATEICDAYTEQLNEQVAQEEPLKDLV 134
Query: 58 -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVK 116
L +F G LV C+V + E GK+ + E ++ GM+LT V
Sbjct: 135 CLSELFSPGMLVRCVVSSVGIT--ESGKKSVKLSLNPKNVNEVLSAEALKPGMLLTGTVS 192
Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
S+EDHGY++ G+ FLP E N G +K G L ++ + VV L
Sbjct: 193 SLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKGNGGVVGL 252
Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
S P VS + + + +++ L+PG++V +VQ + G+ L+FLT+F+G VD HL
Sbjct: 253 SIGPSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLTFFSGLVDFMHLDP 312
Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQ 288
T + N + V A +L V P +RAV L+L P L + + +G + D
Sbjct: 313 KKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRPIFLQPGRSLTRLSCQHLGAVLDD 367
Query: 289 SKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
+ + AY +S +++ + + YK G+ + RI+ + +
Sbjct: 368 VPVQSFFSKAGATFRLKDGAL---AYARLSHLSDSKNIFNAEAYKPGNIHKCRIIDYSQM 424
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+ + L+ S E F + D+KPG +VKG V+ ++ +G +V+ ++ L P H+++
Sbjct: 425 DEMVLLSLRPSIIESQYFRYHDIKPGALVKGTVLTIEPYGMLVKVGEQIRGLIPPMHLAD 484
Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
I P KK+ +G E+ RVL ++K++ +T KKTL++SKL ++ YA+A L THG
Sbjct: 485 ILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGLQTHG 544
Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
+I +++ +GC V+FYN VQG P+ EL + +P +++ GQVVK +++ P+ R+
Sbjct: 545 FILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVVVLNCEPSKERML 604
Query: 527 LSFMM--KPTRV-----SEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHL 579
LSF + P + + + +PT HL
Sbjct: 605 LSFKLLGDPKKEHTGHSQKKRRAISVGQLVDVKVLEKTKDGLEVSVLPHNIPAFLPTPHL 664
Query: 580 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPN 637
+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P + + IHP
Sbjct: 665 SDHVANGPLLYHWLQAGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFAEIHPG 724
Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
++ G+V +I + G FV+F L+G AP++ D S + GQ+V + + +V+ E
Sbjct: 725 MLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEE 784
Query: 698 TGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVI 753
R+ LSL+ S C D S + LEE+ + + S L + + G V+
Sbjct: 785 KQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMVL 844
Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVD 810
+ +V E + G VV F E V G + + + AG VE G + IL+V + V
Sbjct: 845 DLEVQEVLEDGSVV-FSE-GPVSGLVLRASKYHRAGQEVEPGQKKKVVILNVDMLKLEVH 902
Query: 811 LSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNH 870
+SL ++R + HQ AIV+ ++E++ V SL E H
Sbjct: 903 VSLCHDLVNRKPKKLKKGSE---------------HQ---AIVQHLEESFAVASLVETGH 944
Query: 871 SIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXXXXX 929
++ S N T +F ++ GQ V T+ T G LL +
Sbjct: 945 LAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGMT-GFLLAVEGPAAKRTVRQTRK 1003
Query: 930 XXXXXXYD------------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 971
D +G +V + IKP + + G G IH + +
Sbjct: 1004 DSETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHI 1063
Query: 972 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG---SK 1028
DD V + + K+G+TVTAR+I DMK +S + T+ E+ S+
Sbjct: 1064 LDDVP-VGTSPTAKLKVGRTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSE 1119
Query: 1029 LLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIG 1088
L + C ++ + ++ K+ A T+ LK + ++ E + + R +
Sbjct: 1120 LEKDGC-TALNTHSSSHLEKIKQYQAGQTLICFLK-KYNVVKKWLEVEIAPDIRGRIPL- 1176
Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI-------HE---GDIV 1138
+T LS K+L+ + F+ G + K + D+ + F+ H+ G++
Sbjct: 1177 -LLTS--LSF----KVLKHPDKKFRIGQALKATVVGPDSSKAFLCLSLIGPHKLEKGEVA 1229
Query: 1139 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1198
GR+ K+ + GL V P +G++ + + VSD Y E PL + + V
Sbjct: 1230 MGRVVKV-TPKEGLTVSF-P--FGKIGKVSVFH--VSD---SYSE---TPLEDFVPQKIV 1277
Query: 1199 KCKVLEISRTVRGTFHV-ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1257
+C VL T HV LSLRSS TN S D P + I+D+ ++
Sbjct: 1278 RCYVLS------ATGHVLTLSLRSS-----RTNPETKSKITD-P--EINSIQDIQEGQLL 1323
Query: 1258 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVLSV 1311
+GYVK+V G L + V ++S Y SP K+ P GKL+ +VLS+
Sbjct: 1324 RGYVKSVQPHGVLFGLGPSVVGLVQYPHVSQ-Y--SPSKKTLYNRYLPEGKLLTAKVLSL 1380
Query: 1312 EPLSKRVEVTLKTSDS 1327
+ VE++ +D+
Sbjct: 1381 KCQKNLVELSFLPNDT 1396
Score = 600 (216.3 bits), Expect = 4.9e-146, Sum P(3) = 4.9e-146
Identities = 120/265 (45%), Positives = 172/265 (64%)
Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
P + D+F+RL+ SSPNSS +W++YMAF L ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 1601 PESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 1660
Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
VA NLEN YG+ +E++ KVF+RA+QY +P KV L L +Y ++E+ + A EL +M+K
Sbjct: 1661 VALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYNKSEKFQEAGELYNRMLK 1718
Query: 1664 KFKHSCKVWXXXXXXXXXXXXEGVQ-AVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
+F+ VW G V+QRAL LP +H+ I++ A LEF+ G A+R
Sbjct: 1719 RFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDAER 1778
Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXYL 1782
+++FE LS YPKRTD+WS+Y+D I+ G +R +FER I YL
Sbjct: 1779 AKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYL 1838
Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1839 DYEKQHGTEKDVQAVKAKALEYVEA 1863
Score = 177 (67.4 bits), Expect = 5.6e-65, Sum P(3) = 5.6e-65
Identities = 47/168 (27%), Positives = 87/168 (51%)
Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
+ D+ P +V+G V + G + + ++ + +L+D +++PEK++ IG V
Sbjct: 443 RYHDIKPGALVKGTVLTIEPYGMLVKVGEQIRGLIPPMHLADILIKNPEKKYHIGDEVKC 502
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
RVL +P +K++ +TLK + + + I ++ G G I RV+ YG + N
Sbjct: 503 RVLLCDPEAKKLMMTLKKTLIESKLPA-ITCYADAKPGLQTHGFILRVKDYGCIVKFYN- 560
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
++ GL ELS ++V + E ++ G+ VKV +L + K R+ L K
Sbjct: 561 DVQGLVPKHELSAEYVPDPERVFYTGQVVKVVVLNCEPSKERMLLSFK 608
Score = 130 (50.8 bits), Expect = 4.7e-60, Sum P(3) = 4.7e-60
Identities = 59/217 (27%), Positives = 101/217 (46%)
Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK-GCFI 1271
F + +L++++ G S+ + L + P K LEK E + G V VT K G +
Sbjct: 1193 FRIGQALKATVVGPDSSKAF-LCLSLIGPHK-LEKGE------VAMGRVVKVTPKEGLTV 1244
Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS----VEPLSKRVEVTLKTSDS 1327
KV + ++SD Y E+P ++F K+V VLS V LS R T + S
Sbjct: 1245 SFPFGKIGKVSVFHVSDSYSETPLEDFVPQKIVRCYVLSATGHVLTLSLRSSRTNPETKS 1304
Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDHVDN 1384
+ + EIN++ ++ G ++ G +K V+ +G+ + ++VGL HVS+ S
Sbjct: 1305 KI-TDPEINSIQDIQEGQLLRGYVKSVQPHGVLFGL-GPSVVGLVQYPHVSQYSPSKKTL 1362
Query: 1385 IETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
G+ + K+L + +K + L S+ ND
Sbjct: 1363 YNRYLPEGKLLTAKVLSLKCQKNLVEL----SFLPND 1395
Score = 122 (48.0 bits), Expect = 3.2e-59, Sum P(3) = 3.2e-59
Identities = 47/181 (25%), Positives = 81/181 (44%)
Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPI 1300
G +K +S +V V T G + +L + A + +LSD P
Sbjct: 619 GHSQKKRRAISVGQLVDVKVLEKTKDGLEVSVLPHNIPAFLPTPHLSDHVANGP---LLY 675
Query: 1301 GKLVAG----RVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVE 1355
L AG RVL + RV + K + S + N + +H G ++IG +K ++
Sbjct: 676 HWLQAGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFAEIHPGMLLIGFVKSIK 735
Query: 1356 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
YG+F+ + L GL + +S+ V + + G+ V K+ VD+EK+R+ L ++
Sbjct: 736 DYGVFVQFPS-GLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRL 794
Query: 1416 S 1416
S
Sbjct: 795 S 795
Score = 112 (44.5 bits), Expect = 3.6e-58, Sum P(3) = 3.6e-58
Identities = 39/182 (21%), Positives = 83/182 (45%)
Query: 1241 PGKHLEKIEDLSPNMIVQGY-VKNVTSK-GCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1298
PG+ L ++ ++ V++ SK G L A LS+LSD + +
Sbjct: 349 PGRSLTRLSCQHLGAVLDDVPVQSFFSKAGATFRLKDGALAYARLSHLSDSKNIFNAEAY 408
Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
G + R++ + + V ++L+ S +S+ ++ G +V G + +E YG
Sbjct: 409 KPGNIHKCRIIDYSQMDEMVLLSLRPS----IIESQYFRYHDIKPGALVKGTVLTIEPYG 464
Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
+ + + + GL L++ + N E Y G++VK ++L D E +++ + +K +
Sbjct: 465 MLVKV-GEQIRGLIPPMHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLI 523
Query: 1419 KN 1420
++
Sbjct: 524 ES 525
Score = 101 (40.6 bits), Expect = 9.2e-57, Sum P(4) = 9.2e-57
Identities = 46/186 (24%), Positives = 77/186 (41%)
Query: 939 GSLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
G + + ++ P E L + F G G++ + V+D S E +F + V ++
Sbjct: 1226 GEVAMGRVVKVTPKEGLTVSFPFGKIGKVSVFHVSDSYS---ETPLEDFVPQKIVRCYVL 1282
Query: 998 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEW 1053
+ + + LS++ S T E SK+ E D+ GQ + GYV V
Sbjct: 1283 SATGH-------VLTLSLRSSR-TNPETKSKITDPEINSIQDIQEGQLLRGYVKSVQPHG 1334
Query: 1054 ALLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
L + + + + S Y PS+ + R GK +T VLS+ +K L+ L P
Sbjct: 1335 VLFGLGPSVVGLVQYPHVSQYSPSKKTLYNRYLPEGKLLTAKVLSLKCQKNLVELSFLPN 1394
Query: 1113 QDGISD 1118
G D
Sbjct: 1395 DTGKPD 1400
Score = 84 (34.6 bits), Expect = 9.9e-92, Sum P(3) = 9.9e-92
Identities = 23/94 (24%), Positives = 43/94 (45%)
Query: 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
DA R FE + + P + VW Y+ + ++ R I ER + +++ + K
Sbjct: 1775 DAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIH-LSLAPKRMKF- 1832
Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
+ Y + E ++G + VK +AL+Y + K
Sbjct: 1833 FFKRYLDYEKQHGTEKDVQAVKA--KALEYVEAK 1864
Score = 78 (32.5 bits), Expect = 2.3e-54, Sum P(4) = 2.3e-54
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 1304 VAGRVLSVE-PLSKRVEVTLKTSDSRTASQSE-------INNLSN--LHVGDIVIGQIKR 1353
+ G +L+VE P +KR V DS T + E + + L +GD+V G +K
Sbjct: 982 MTGFLLAVEGPAAKRT-VRQTRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKS 1040
Query: 1354 VESYGLFITIENTNLVGLCHVSELSED 1380
++ + +T+E+ ++G H S + +D
Sbjct: 1041 IKPTHVVVTLED-GIIGCIHASHILDD 1066
Score = 77 (32.2 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
Identities = 42/214 (19%), Positives = 85/214 (39%)
Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI---EDLSPNMIVQGYVKNVTSKGC 1269
F + +R + + T S S + K++ ++ E L P M++ G V ++ G
Sbjct: 140 FSPGMLVRCVVSSVGITESGKKSVKLSLNPKNVNEVLSAEALKPGMLLTGTVSSLEDHGY 199
Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEK--EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
+ + L + Y+ K + +G+ + + V+ V +++ S+
Sbjct: 200 LVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKGNGGVVGLSIGPSEV 259
Query: 1328 RTASQSEINN--LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
A +E N L+NL G +V Q+++V GL + T GL L
Sbjct: 260 SAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFL-TFFSGLVDFMHLDPKKAGT- 317
Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
Y + + V+ +L V R + L ++ + +
Sbjct: 318 ---YFSNQAVRACVLCVHPRTRAVRLSLRPIFLQ 348
Score = 66 (28.3 bits), Expect = 9.5e-55, Sum P(2) = 9.5e-55
Identities = 16/82 (19%), Positives = 39/82 (47%)
Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
+K++++ + S + E+ ++ +L G ++G +K V L I++ N L G
Sbjct: 51 TKKLKIEKRESSKSVREKFEVLSVESLREGMRILGCVKEVHELELVISLPN-GLQGFVQA 109
Query: 1375 SELSEDHVDNIETIYRAGEKVK 1396
+E+ + + + + E +K
Sbjct: 110 TEICDAYTEQLNEQVAQEEPLK 131
Score = 60 (26.2 bits), Expect = 1.8e-53, Sum P(3) = 1.8e-53
Identities = 37/131 (28%), Positives = 59/131 (45%)
Query: 110 VLTAYVKSIEDHGYILHFGLPSF-TGFLPRNNLAE---NSGIDVKPGLLLQGVVRSIDRT 165
++ YV S G++L L S T ++ + + NS D++ G LL+G V+S+
Sbjct: 1276 IVRCYVLSAT--GHVLTLSLRSSRTNPETKSKITDPEINSIQDIQEGQLLRGYVKSVQPH 1333
Query: 166 R-------KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL--ENGVMLSF 216
VV L P +K K + L G +++ +V S+ +N V LSF
Sbjct: 1334 GVLFGLGPSVVGLVQYPHVSQYSPSK--KTLYNRYLPEGKLLTAKVLSLKCQKNLVELSF 1391
Query: 217 LTYFTGTVDIF 227
L TG D+F
Sbjct: 1392 LPNDTGKPDVF 1402
Score = 56 (24.8 bits), Expect = 4.3e-52, Sum P(4) = 4.3e-52
Identities = 96/454 (21%), Positives = 174/454 (38%)
Query: 978 VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC--D 1035
+++N + IG V R++ P+ KK + ++K ++ I SKL C D
Sbjct: 486 LIKNPEKKYHIGDEVKCRVLLCD--PEAKKLMM---TLKKTL-----IESKLPAITCYAD 535
Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTG 1093
G + G++ +V + ++ ++ + L + Y P +R F+ G+ V
Sbjct: 536 AKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDP----ERVFYTGQVVKV 591
Query: 1094 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1153
VL+ K+ + L + D + T + + I G +V ++ + GL
Sbjct: 592 VVLNCEPSKERMLLSFKLLGDPKKEHTGH--SQKKRRAISVGQLVDVKVLEKTKD--GLE 647
Query: 1154 VQIGPH-LYGRVHFTELKNICVSDPLSGYDEGQFDPLS-----GYDEGQFVKCKVLEISR 1207
V + PH + + L + + PL + D L EG+ + C+ +
Sbjct: 648 VSVLPHNIPAFLPTPHLSDHVANGPLLYHWLQAGDTLHRVLCLSQSEGRVLLCRKPALVS 707
Query: 1208 TVRG-----TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
TV G F E+ L G + D V P + L+P I+ K
Sbjct: 708 TVEGGQDPKNF-AEIHPGMLLIGFVKS-IKDYGVFVQFPSG----LSGLAPKAIMSD--K 759
Query: 1263 NVTSKGCFIMLSRKLDAKVL-LSNLSDGYVESPE-KEFPIGKLVAGRVLSVEP-LSKRVE 1319
VTS + + + AKV + + S + +G L +L + L +R
Sbjct: 760 FVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQG 819
Query: 1320 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
V S+ + I L+ + G ++ +++ V G + E + GL V S+
Sbjct: 820 VRSLMSNRDSVL---IQTLAEMTPGMVLDLEVQEVLEDGSVVFSEGP-VSGL--VLRASK 873
Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
H E G+K KV IL VD K + + +
Sbjct: 874 YHRAGQEV--EPGQKKKVVILNVDMLKLEVHVSL 905
Score = 55 (24.4 bits), Expect = 6.0e-53, Sum P(3) = 6.0e-53
Identities = 31/130 (23%), Positives = 50/130 (38%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK----EFPIGKL 1303
+E L M + G VK V I L L V + + D Y E + E P+ L
Sbjct: 74 VESLREGMRILGCVKEVHELELVISLPNGLQGFVQATEICDAYTEQLNEQVAQEEPLKDL 133
Query: 1304 VA-GRVLSVEPLSKRV--EVTLKTSDSRTASQS-------EINNLSNLHVGDIVIGQIKR 1353
V + S L + V V + S ++ S E+ + L G ++ G +
Sbjct: 134 VCLSELFSPGMLVRCVVSSVGITESGKKSVKLSLNPKNVNEVLSAEALKPGMLLTGTVSS 193
Query: 1354 VESYGLFITI 1363
+E +G + I
Sbjct: 194 LEDHGYLVDI 203
Score = 47 (21.6 bits), Expect = 4.9e-146, Sum P(3) = 4.9e-146
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 1378 SEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1408
SE+ +E YR GE+ ++ + KEK R
Sbjct: 1492 SEEDDSGVEVYYREGEEEVEEMSVLPKEKPR 1522
Score = 45 (20.9 bits), Expect = 1.5e-52, Sum P(2) = 1.5e-52
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 122 GYILHFGLPSFTGFLPRNNLAENSGIDVKP 151
G+I GL S T LP + +S D KP
Sbjct: 1535 GFIWDVGLDSLTPALPPRGESSDSEEDNKP 1564
Score = 40 (19.1 bits), Expect = 5.6e-65, Sum P(3) = 5.6e-65
Identities = 17/80 (21%), Positives = 33/80 (41%)
Query: 319 DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 378
D++ EE KK ++G ++ +E + FE V + ++ GM +
Sbjct: 31 DISIEEESTKRKKSQKGPAKTKKL----KIEKRESSKSVREKFE--VLSVESLREGMRIL 84
Query: 379 GKVIAVDSFGAIVQFPGGVK 398
G V V ++ P G++
Sbjct: 85 GCVKEVHELELVISLPNGLQ 104
Score = 38 (18.4 bits), Expect = 3.6e-87, Sum P(2) = 3.6e-87
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 1786 KSVGEEERIEYVKQKA 1801
+S GE+ER+ ++KA
Sbjct: 1474 ESAGEQERVNKKQKKA 1489
>UNIPROTKB|Q14690 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
EMBL:CH471066 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL591408
GO:GO:0006364 EMBL:AL139339 InterPro:IPR022967 SMART:SM00316
CTD:22984 eggNOG:COG0539 HOGENOM:HOG000088607 HOVERGEN:HBG108419
KO:K14792 EMBL:D80007 EMBL:AL603983 EMBL:BC049838 EMBL:BC064486
EMBL:BC080560 EMBL:BC111040 EMBL:AY007124 IPI:IPI00400922
RefSeq:NP_055791.1 UniGene:Hs.239499 PDB:1WI5 PDBsum:1WI5
ProteinModelPortal:Q14690 SMR:Q14690 IntAct:Q14690
MINT:MINT-1388150 STRING:Q14690 PhosphoSite:Q14690 DMDM:145559523
SWISS-2DPAGE:Q14690 PaxDb:Q14690 PRIDE:Q14690 DNASU:22984
Ensembl:ENST00000369797 GeneID:22984 KEGG:hsa:22984 UCSC:uc001kwy.1
GeneCards:GC10P105156 H-InvDB:HIX0009176 HGNC:HGNC:13408
HPA:CAB026472 HPA:HPA017924 MIM:612333 neXtProt:NX_Q14690
PharmGKB:PA134909758 InParanoid:Q14690 OMA:LHLADIY
OrthoDB:EOG4XKV63 PhylomeDB:Q14690 ChiTaRS:PDCD11
EvolutionaryTrace:Q14690 GenomeRNAi:22984 NextBio:43819
ArrayExpress:Q14690 Bgee:Q14690 CleanEx:HS_PDCD11
Genevestigator:Q14690 GermOnline:ENSG00000148843 Uniprot:Q14690
Length = 1871
Score = 920 (328.9 bits), Expect = 4.2e-144, Sum P(3) = 4.2e-144
Identities = 352/1383 (25%), Positives = 603/1383 (43%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL---- 57
+++ GM++ G V EVNE +LVI NE E L
Sbjct: 78 ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137
Query: 58 -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVK 116
LP +F G LV C+V L + GK+ + E ++ GM+LT V
Sbjct: 138 HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195
Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
S+EDHGY++ G+ FLP E N G +K G L +V + VV L
Sbjct: 196 SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255
Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
S VS + + + +++ L+PG++V +VQ + G+ L+FLT+FTG VD HL
Sbjct: 256 SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315
Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQ 288
T + N + V A IL V P +R V L+L P L P + + +G + D
Sbjct: 316 KKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370
Query: 289 SKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
+ + AY +S +++ + + +K G+ + RI+ + +
Sbjct: 371 VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+ LA L+ S E + D++PG VVKG V+ + S+G +V+ ++ L P H+++
Sbjct: 428 DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487
Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
+ P KK+ +G E+ RVL ++K++ +T KKTL++SKL +++ YA+A L THG
Sbjct: 488 ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 547
Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
+I +++ +GC V+FYN VQG P+ EL + +P +++ GQVVK +++ P+ R+
Sbjct: 548 FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607
Query: 527 LSFMM--------KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYS-KGTIPTE 577
LSF + +P S+ ++ + +PT
Sbjct: 608 LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTS 667
Query: 578 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIH 635
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P + S IH
Sbjct: 668 HLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIH 727
Query: 636 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
P ++ G+V +I + G F++F L+G AP++ D S + GQ+V + + +V+
Sbjct: 728 PGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVD 787
Query: 696 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIG 750
E R+ LSL+ S C D + + LL + + LQ S + ++ + G
Sbjct: 788 EEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPG 846
Query: 751 SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
++ V E D VV S D+ + + AG VESG + IL+V + V
Sbjct: 847 MFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEV 906
Query: 810 DLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
+SL ++R +A HQ AIV+ +++++ + SL E
Sbjct: 907 HVSLHQDLVNR--KARKLRKGSE-------------HQ---AIVQHLEKSFAIASLVETG 948
Query: 870 HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXXXXX 924
H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 949 HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT-GLLLAVEGPAAKRTMRPTQ 1007
Query: 925 XXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
D +G +V + IKP + + G G IH +
Sbjct: 1008 KDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASH 1067
Query: 971 VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1030
+ DD + K+G+TVTAR+I DMK +S + T+ E+ +
Sbjct: 1068 ILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DMKTFKYLPISHPRFVRTIPELSVRPS 1123
Query: 1031 -FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIG- 1088
E+ ++ + K+ A T++ LK + ++ E + + R +
Sbjct: 1124 ELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLK-KYNVVKKWLEVEIAPDIRGRIPLLL 1182
Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGI-SDKTVDISNDNMQTFIHEGDIVGGRISKILS 1147
+++ VL +K + LR G S KT+ + + EG++ GR+ K+
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHKLEEGEVAMGRVVKVTP 1242
Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
G L V P +G++ + ++ SD Y E PL + + V+C +L +
Sbjct: 1243 NEG-LTVSF-P--FGKIGTVSIFHM--SD---SYSE---TPLEDFVPQKVVRCYILSTAD 1290
Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
V + LSLRSS TN + + V+ P + I+D+ +++GYV ++
Sbjct: 1291 NV-----LTLSLRSS-----RTNP-ETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPH 1337
Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
G F L + S++S K P GKL+ RVL + VE++
Sbjct: 1338 GVFFRLGPSVVGLARYSHVSQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLP 1397
Query: 1325 SDS 1327
D+
Sbjct: 1398 GDT 1400
Score = 595 (214.5 bits), Expect = 4.2e-144, Sum P(3) = 4.2e-144
Identities = 120/265 (45%), Positives = 171/265 (64%)
Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
P + D+F+RLV SSPNSS +W++YMAF L ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 1602 PESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 1661
Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
VA NLEN YG+ +E++ KVF+RA+QY +P KV L L +Y ++E+ + A EL +M+K
Sbjct: 1662 VALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLK 1719
Query: 1664 KFKHSCKVWXXXXXXXXXXXXEGVQ-AVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
+F+ VW V+QRAL LP +H+ I++ A LEF+ G A+R
Sbjct: 1720 RFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAER 1779
Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXYL 1782
+++FE LS YPKRTD+WS+Y+D I+ G +R +FER I YL
Sbjct: 1780 AKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYL 1839
Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1840 DYEKQHGTEKDVQAVKAKALEYVEA 1864
Score = 187 (70.9 bits), Expect = 1.6e-66, Sum P(3) = 1.6e-66
Identities = 52/173 (30%), Positives = 91/173 (52%)
Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
+ D+ P +V+G V + S G + + ++ V +L+D +++PEK++ IG V
Sbjct: 446 RYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKC 505
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITI 1363
RVL +P +K++ +TLK +T +S+ I ++ G G I RV+ YG +
Sbjct: 506 RVLLCDPEAKKLMMTLK----KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKF 561
Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
N N+ GL ELS +++ + E ++ G+ VKV +L + K R+ L K S
Sbjct: 562 YN-NVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613
Score = 139 (54.0 bits), Expect = 1.7e-61, Sum P(3) = 1.7e-61
Identities = 50/190 (26%), Positives = 87/190 (45%)
Query: 1231 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDG 1289
SSD + G +K + ++ +V V T G + +L + A + S+LSD
Sbjct: 613 SSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDH 672
Query: 1290 YVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDI 1346
P G ++ RVL + RV + K + S + N S +H G +
Sbjct: 673 VANGPLLHHWLQAGDILH-RVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGML 731
Query: 1347 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1406
+IG +K ++ YG+FI + L GL + +S+ V + + G+ V K+ VD+EK
Sbjct: 732 LIGFVKSIKDYGVFIQFPS-GLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEK 790
Query: 1407 RRISLGMKSS 1416
+R+ L ++ S
Sbjct: 791 QRMLLSLRLS 800
Score = 129 (50.5 bits), Expect = 1.9e-60, Sum P(3) = 1.9e-60
Identities = 51/208 (24%), Positives = 101/208 (48%)
Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
F V +LR+++ G +SS + G H K+E+ + G V VT ++G +
Sbjct: 1197 FRVGQALRATVVG---PDSSKTLLCLSLTGPH--KLEE---GEVAMGRVVKVTPNEGLTV 1248
Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS----VEPLSKRVEVTLKTSDS 1327
V + ++SD Y E+P ++F K+V +LS V LS R T + S
Sbjct: 1249 SFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYILSTADNVLTLSLRSSRTNPETKS 1308
Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
+ EIN++ ++ G ++ G + ++ +G+F + ++VGL S +S+ H + +
Sbjct: 1309 KV-EDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPSKKA 1365
Query: 1388 IYRA----GEKVKVKILKVDKEKRRISL 1411
+Y G+ + ++L+++ +K + L
Sbjct: 1366 LYNKHLPEGKLLTARVLRLNHQKNLVEL 1393
Score = 88 (36.0 bits), Expect = 4.5e-55, Sum P(4) = 4.5e-55
Identities = 43/186 (23%), Positives = 75/186 (40%)
Query: 939 GSLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
G + + ++ P E L + F G G + I ++D S E +F + V I+
Sbjct: 1230 GEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYS---ETPLEDFVPQKVVRCYIL 1286
Query: 998 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEW 1053
+ ++ + LS++ S T E SK+ E D+ GQ + GYV +
Sbjct: 1287 STADN-------VLTLSLRSSR-TNPETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHG 1338
Query: 1054 ALLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
+ + + S + PS+ + + GK +T VL +N +K L+ L P
Sbjct: 1339 VFFRLGPSVVGLARYSHVSQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPG 1398
Query: 1113 QDGISD 1118
G D
Sbjct: 1399 DTGKPD 1404
Score = 86 (35.3 bits), Expect = 5.9e-56, Sum P(3) = 5.9e-56
Identities = 29/110 (26%), Positives = 55/110 (50%)
Query: 1304 VAGRVLSVE-PLSKR-VEVTLKTSDSRTASQSE-------INNLSN--LHVGDIVIGQIK 1352
V G +L+VE P +KR + T K DS T + E + + L +GD+V G +K
Sbjct: 987 VTGLLLAVEGPAAKRTMRPTQK--DSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVK 1044
Query: 1353 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKIL 1400
++ + +T+E+ ++G H S + +D + T + G+ V +++
Sbjct: 1045 SIKPTHVVVTLED-GIIGCIHASHILDDVPEGTSPTTKLKVGKTVTARVI 1093
Score = 82 (33.9 bits), Expect = 4.0e-90, Sum P(3) = 4.0e-90
Identities = 23/94 (24%), Positives = 42/94 (44%)
Query: 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
DA R FE + + P + VW Y+ + + R I ER + +++ + K
Sbjct: 1776 DAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIH-LSLAPKRMKF- 1833
Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
+ Y + E ++G + VK +AL+Y + K
Sbjct: 1834 FFKRYLDYEKQHGTEKDVQAVKA--KALEYVEAK 1865
Score = 82 (33.9 bits), Expect = 1.5e-55, Sum P(3) = 1.5e-55
Identities = 45/216 (20%), Positives = 91/216 (42%)
Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI---EDLSPNMIVQGYVKNVTSKGC 1269
F + +R + + T+ S + K++ ++ E L P M++ G V ++ G
Sbjct: 143 FSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHGY 202
Query: 1270 FIMLSRKLDA-KVLLSNL-SDGYVESPEK--EFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
+ + +D + L L + Y+ K + +G+ + V V+ V +++ S
Sbjct: 203 LVDIG--VDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHS 260
Query: 1326 DSRTASQSEIN--NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1383
+ TA +E NL+NL G +V Q+++V +GL + T G+ L
Sbjct: 261 EVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFL-TFFTGVVDFMHLDPKKAG 319
Query: 1384 NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
Y + + V+ IL V R + L ++ + +
Sbjct: 320 T----YFSNQAVRACILCVHPRTRVVHLSLRPIFLQ 351
Score = 64 (27.6 bits), Expect = 6.3e-53, Sum P(3) = 6.3e-53
Identities = 16/71 (22%), Positives = 36/71 (50%)
Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
+K++++ + S + EI ++ +L G ++G +K V L I++ N L G V
Sbjct: 54 TKKLKIEKRESSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPN-GLQGFVQV 112
Query: 1375 SELSEDHVDNI 1385
+E+ + + +
Sbjct: 113 TEICDAYTKKL 123
Score = 53 (23.7 bits), Expect = 8.9e-52, Sum P(3) = 8.9e-52
Identities = 30/130 (23%), Positives = 54/130 (41%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV----ESPEKEFPIGKL 1303
+E L M + G VK V I L L V ++ + D Y E +E P+ L
Sbjct: 77 VESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDL 136
Query: 1304 V-AGRVLSVEPLSKRVEVTLKTSD-SRTASQSEIN--NLSN------LHVGDIVIGQIKR 1353
+ + S L + V +L +D + + + +N N++ L G ++ G +
Sbjct: 137 LHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSS 196
Query: 1354 VESYGLFITI 1363
+E +G + I
Sbjct: 197 LEDHGYLVDI 206
Score = 50 (22.7 bits), Expect = 1.6e-66, Sum P(3) = 1.6e-66
Identities = 28/104 (26%), Positives = 47/104 (45%)
Query: 685 QSV-RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 743
QSV + N+ D+++E G S K+ A + L EK +S++ E+
Sbjct: 25 QSVEQDNLFDISTEEG----STKRKKSQKGPAKTKK---LKIEKRESSKSAREK-FEILS 76
Query: 744 VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA 787
VE G I G V E N+ +V+S + + GF+ ++ A
Sbjct: 77 VESLCEGMRILGCVKEVNELELVISLP--NGLQGFVQVTEICDA 118
Score = 43 (20.2 bits), Expect = 6.3e-53, Sum P(3) = 6.3e-53
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 1391 AGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
+G+K KV IL VD K + + + A L+
Sbjct: 888 SGQKKKVVILNVDLLKLEVHVSLHQDLVNRKARKLR 923
Score = 41 (19.5 bits), Expect = 3.4e-50, Sum P(4) = 3.4e-50
Identities = 17/44 (38%), Positives = 19/44 (43%)
Query: 1157 GPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1199
G L RV KN+ L G D G+ D LS EGQ K
Sbjct: 1374 GKLLTARVLRLNHQKNLVELSFLPG-DTGKPDVLSASLEGQLTK 1416
Score = 39 (18.8 bits), Expect = 4.2e-144, Sum P(3) = 4.2e-144
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
L S+ ED + TI ++ ++ +++ K +KE RI
Sbjct: 1553 LAESSDSEEDEKPHQATIKKSKKERELEKQKAEKELSRI 1591
Score = 37 (18.1 bits), Expect = 6.8e-144, Sum P(3) = 6.8e-144
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
LSE+ ++ YR G++ + + KEK+
Sbjct: 1492 LSEEDDSLVDVYYREGKEEAEETNVLPKEKQ 1522
>UNIPROTKB|F1S842 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011594
ArrayExpress:F1S842 Uniprot:F1S842
Length = 1859
Score = 897 (320.8 bits), Expect = 1.1e-142, Sum P(3) = 1.1e-142
Identities = 359/1395 (25%), Positives = 613/1395 (43%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL---- 57
+++ GM++ G V EVNE +LVI NE A E+ L
Sbjct: 78 ESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYTKKLNEQVAQEEPLQDLV 137
Query: 58 -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVK 116
LP +F G LV C+V L K GK+ + E ++ GM+LT V
Sbjct: 138 GLPELFSPGMLVRCVVSSLGITKS--GKKDVKLSLNPKNVNKVLNPEALKPGMLLTGTVS 195
Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
S+EDHGY++ G+ FLP E N +K G L +++ + + VV L
Sbjct: 196 SLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKDAKLKVGQYLNCIIQEVKGSGGVVSL 255
Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
S VS + + + +++ L+PG++V +VQ + G+ L FL++FTG VD HL
Sbjct: 256 SIGNSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPLGLTLKFLSFFTGLVDFMHLDP 315
Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
T + N + V A +L V P +R V L+L P L P + + ++G + +
Sbjct: 316 KKAGTYFSN-----QPVRACVLCVHPRTRDVRLSLRPTFLQPGRPLTGLSCQQLGAVLED 370
Query: 289 SKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
+ T AY + ++ + + +K G+ + RI+ + +
Sbjct: 371 VPVQGFFGNAGATFRLKD---GTLAYARFNHLSNSKKAFKPETFKPGNIHKCRIIDYSRM 427
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+ + L+ S E + D+KPG +VKGKV+ + +G +V ++ L P H+++
Sbjct: 428 DEMVLLSLRTSVIEAQFLRYHDIKPGALVKGKVLTIKPYGMLVNMGREIRGLVPPMHLAD 487
Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
+ P KK+ VG E+ RVL ++KR+ +T KKTLV+SKL ++ YA+A L THG
Sbjct: 488 ILMKNPEKKYHVGDEVKCRVLLCDPEAKRLMMTLKKTLVESKLPAITCYADAKPGLQTHG 547
Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
+I +++ +GC V+FYN VQG P+ EL + +P S QVVK +++ P+ ++
Sbjct: 548 FILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPESGVVSCQVVKVVVLNCEPSKEKML 607
Query: 527 LSFMMK--PTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX-----XIAKGYSKGTIPTEHL 579
LSF + P + SE + + +PT HL
Sbjct: 608 LSFRLSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLEVAVLPHNIRAFLPTPHL 667
Query: 580 ADHLEHATVMKSVIKPGYEFDQLLVL-DNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 636
+DH+ ++ ++ ++ G ++L L + E N LL K +L+++ + Q P S IHP
Sbjct: 668 SDHVANSPLLYHWLQAGDVLHRVLCLSETEERNELLCRKPALVSAVEGGQDPKSFSEIHP 727
Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
++ G+V +I + G F++F L+G AP++ D S + GQ+V + + +V+
Sbjct: 728 GMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDE 787
Query: 697 ETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGSV 752
E R+ LSL+ S C+ D S + LEE+ + + S L + + G V
Sbjct: 788 EKQRMLLSLRLSDCTLGDQATTSLLLLSQCLEEQQGVRSLMSNRDSVLIQTLAEMTPGMV 847
Query: 753 IEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLV 809
++ +V E + G V+ F E V G + + + AG VESG + IL+V + V
Sbjct: 848 LDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQEVESGQKKKVVILNVDMLKLEV 905
Query: 810 DLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
+SL+ ++R + G +Q A+V+ ++E + V SL E
Sbjct: 906 HVSLRRDLVNRRTKKLRKG---------------GEYQ---AVVQHLEETFAVASLVETG 947
Query: 870 HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXXXXX 924
H ++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 948 HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLSTTEPGVT-GLLLAVEGPAAKRTMRQTR 1006
Query: 925 XXXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
D +G +V + IKP + + G G IH +
Sbjct: 1007 KDSETVDEDEEVDPALVVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIVGCIHASH 1066
Query: 971 VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL- 1029
+ DD V + + K+G+ VTAR+I DMK +S + T+ E+ +
Sbjct: 1067 ILDDVP-VGTSPTTKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPS 1122
Query: 1030 -LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIG 1088
L E+ ++ + K+ A T++ LK + ++ E + + R +
Sbjct: 1123 ELKEDGHTALNTHSVSPLEKIKQYKAGQTVTCFLK-KYNVVKKWLEVEIAPDIRGRIPL- 1180
Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI-------HE---GDIV 1138
L ++ K+L+ + FQ G + K + D+ + F+ H+ G++
Sbjct: 1181 -------LLMSLSFKVLKHPDKKFQIGQALKATVVGPDSSKAFLCLSLIGPHKMEKGEVA 1233
Query: 1139 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1198
GR+ K+ + GL+V P +G++ + + VSD S PL ++ +
Sbjct: 1234 MGRVVKV-TPKEGLMVSF-P--FGKIGKVNIFH--VSDSFSE------TPLETFNLKKIE 1281
Query: 1199 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1258
+C VL + V + LSLRSS TN S VD P + +D+ +++
Sbjct: 1282 RCYVLSNAGPV-----LTLSLRSS-----RTNPDTKSKIVD-P--EINSTQDIEEGQLLR 1328
Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------EKEFPIGKLVAGRVLSVE 1312
GYVK++ G + L + S++S SP +K P GKL+ +VLS+
Sbjct: 1329 GYVKSIQPSGVLLGLGPSVTGLARYSHVSQ---HSPTRNALYDKYLPEGKLLTAKVLSLN 1385
Query: 1313 PLSKRVEVTLKTSDS 1327
VE++ D+
Sbjct: 1386 RRENLVELSFLPGDT 1400
Score = 602 (217.0 bits), Expect = 1.1e-142, Sum P(3) = 1.1e-142
Identities = 121/265 (45%), Positives = 173/265 (65%)
Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
P + D+F+RLV SSPNSS +W++YMAF L ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 1590 PESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 1649
Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
VA NLEN YG+ +E++ KVF+RA+QY +P KV L L +Y ++E+ + A EL +M+K
Sbjct: 1650 VALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLK 1707
Query: 1664 KFKHSCKVWXXXXXXXXXXXXEGVQ-AVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
+F+ VW G V+QRAL LP+ +H+ I++ A LEF+ G A+R
Sbjct: 1708 RFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAER 1767
Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXYL 1782
+++FE LS YPKRTD+WS+Y+D I+ G +R +FER I YL
Sbjct: 1768 AKAIFENTLSTYPKRTDVWSVYIDMIIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYL 1827
Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1828 DYEKQHGTEKDVQAVKAKALEYVEA 1852
Score = 161 (61.7 bits), Expect = 5.7e-65, Sum P(2) = 5.7e-65
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
+ D+ P +V+G V + G + + R++ V +L+D +++PEK++ +G V
Sbjct: 446 RYHDIKPGALVKGKVLTIKPYGMLVNMGREIRGLVPPMHLADILMKNPEKKYHVGDEVKC 505
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
RVL +P +KR+ +TLK + + + I ++ G G I RV+ YG + N
Sbjct: 506 RVLLCDPEAKRLMMTLKKTLVESKLPA-ITCYADAKPGLQTHGFILRVKDYGCIVKFYN- 563
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
++ GL ELS ++V + E+ + + VKV +L + K ++ L + S
Sbjct: 564 DVQGLVPKHELSAEYVPDPESGVVSCQVVKVVVLNCEPSKEKMLLSFRLS 613
Score = 129 (50.5 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 49/190 (25%), Positives = 90/190 (47%)
Query: 1234 LSTDV--DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGY 1290
LS+D ++ G +K L+ +V V + T G + +L + A + +LSD
Sbjct: 612 LSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLEVAVLPHNIRAFLPTPHLSDHV 671
Query: 1291 VESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS--EINNLSNLHVGDI 1346
SP G V RVL + +R E+ + +A + + + S +H G +
Sbjct: 672 ANSPLLYHWLQAGD-VLHRVLCLSETEERNELLCRKPALVSAVEGGQDPKSFSEIHPGML 730
Query: 1347 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1406
+IG ++ ++ YG+FI + L GL + +S+ V + + G+ V K+ VD+EK
Sbjct: 731 LIGFVRSIKDYGVFIQFPS-GLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEK 789
Query: 1407 RRISLGMKSS 1416
+R+ L ++ S
Sbjct: 790 QRMLLSLRLS 799
Score = 111 (44.1 bits), Expect = 1.0e-59, Sum P(2) = 1.0e-59
Identities = 50/208 (24%), Positives = 96/208 (46%)
Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK-GCFI 1271
F + +L++++ G S+ + L + P K +EK E + G V VT K G +
Sbjct: 1197 FQIGQALKATVVGPDSSKAF-LCLSLIGPHK-MEKGE------VAMGRVVKVTPKEGLMV 1248
Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS----VEPLSKRVEVTLKTSDS 1327
KV + ++SD + E+P + F + K+ VLS V LS R T + S
Sbjct: 1249 SFPFGKIGKVNIFHVSDSFSETPLETFNLKKIERCYVLSNAGPVLTLSLRSSRTNPDTKS 1308
Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
+ EIN+ ++ G ++ G +K ++ G+ + + ++ GL S +S+ H
Sbjct: 1309 KIVDP-EINSTQDIEEGQLLRGYVKSIQPSGVLLGL-GPSVTGLARYSHVSQ-HSPTRNA 1365
Query: 1388 IYRA----GEKVKVKILKVDKEKRRISL 1411
+Y G+ + K+L +++ + + L
Sbjct: 1366 LYDKYLPEGKLLTAKVLSLNRRENLVEL 1393
Score = 103 (41.3 bits), Expect = 8.9e-58, Sum P(3) = 8.9e-58
Identities = 44/182 (24%), Positives = 72/182 (39%)
Query: 939 GSLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
G + + ++ P E L + F G G+++I V+D S F+ KI R
Sbjct: 1230 GEVAMGRVVKVTPKEGLMVSFPFGKIGKVNIFHVSDSFSETPLETFNLKKI-----ERCY 1284
Query: 998 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1057
SN + L P T S+I + D+ GQ + GYV + LL
Sbjct: 1285 VLSNAGPVLTLSLRSSRTNPD--TKSKIVDPEINSTQDIEEGQLLRGYVKSIQPSGVLLG 1342
Query: 1058 ISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1116
+ + + S + P+ + + GK +T VLS+N+ + L+ L P G
Sbjct: 1343 LGPSVTGLARYSHVSQHSPTRNALYDKYLPEGKLLTAKVLSLNRRENLVELSFLPGDTGK 1402
Query: 1117 SD 1118
D
Sbjct: 1403 PD 1404
Score = 102 (41.0 bits), Expect = 7.0e-58, Sum P(3) = 7.0e-58
Identities = 23/92 (25%), Positives = 46/92 (50%)
Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
G+ + ++ P M++ G+V+++ G FI L + +SD +V S F G
Sbjct: 716 GQDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEG 775
Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
+ V +V +V+ +R+ ++L+ SD Q+
Sbjct: 776 QTVVAKVTNVDEEKQRMLLSLRLSDCTLGDQA 807
Score = 89 (36.4 bits), Expect = 2.2e-57, Sum P(2) = 2.2e-57
Identities = 30/109 (27%), Positives = 54/109 (49%)
Query: 1304 VAGRVLSVE-PLSKRVEVTLKTSDSRTASQSE-------INNLSN--LHVGDIVIGQIKR 1353
V G +L+VE P +KR + DS T + E + + L +GD+V G +K
Sbjct: 986 VTGLLLAVEGPAAKRT-MRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDMVTGTVKS 1044
Query: 1354 VESYGLFITIENTNLVGLCHVSELSED-HVDNIETI-YRAGEKVKVKIL 1400
++ + +T+E+ +VG H S + +D V T + G+KV +++
Sbjct: 1045 IKPTHVVVTLED-GIVGCIHASHILDDVPVGTSPTTKLKVGKKVTARVI 1092
Score = 89 (36.4 bits), Expect = 2.2e-57, Sum P(2) = 2.2e-57
Identities = 44/208 (21%), Positives = 90/208 (43%)
Query: 1221 SSLDGMSSTNSSDLSTDVDTPGKHLEKI---EDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
SSL G++ + D+ ++ P K++ K+ E L P M++ G V ++ G + +
Sbjct: 154 SSL-GITKSGKKDVKLSLN-P-KNVNKVLNPEALKPGMLLTGTVSSLEDHGYLVDIGVSG 210
Query: 1278 DAKVLLSNLSDGYVESPEKE--FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1335
L + Y+ K+ +G+ + + V+ V +++ S+ A +E
Sbjct: 211 ARAFLPLQKAQEYIRQKNKDAKLKVGQYLNCIIQEVKGSGGVVSLSIGNSEVSAAIATEE 270
Query: 1336 NN--LSNLHVGDIVIGQIKRVESYGLFITIEN--TNLVGLCHVSELSEDHVDNIETIYRA 1391
N L+NL G +V Q+++V GL + + T LV H+ Y +
Sbjct: 271 QNWTLNNLLPGLVVKAQVQKVTPLGLTLKFLSFFTGLVDFMHLDPKKAG-------TYFS 323
Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYFK 1419
+ V+ +L V R + L ++ ++ +
Sbjct: 324 NQPVRACVLCVHPRTRDVRLSLRPTFLQ 351
Score = 86 (35.3 bits), Expect = 2.1e-88, Sum P(3) = 2.1e-88
Identities = 23/94 (24%), Positives = 44/94 (46%)
Query: 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
DA R FE + + P + VW Y+ ++ ++ R I ER + +++ + K
Sbjct: 1764 DAERAKAIFENTLSTYPKRTDVWSVYIDMIIKHGSQKEVRDIFERVIH-LSLAPKRMKF- 1821
Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
+ Y + E ++G + VK +AL+Y + K
Sbjct: 1822 FFKRYLDYEKQHGTEKDVQAVKA--KALEYVEAK 1853
Score = 73 (30.8 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 29/98 (29%), Positives = 49/98 (50%)
Query: 144 NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC--VTKD--LKGISIDLLVP-GM 198
NS D++ G LL+G V+SI + ++ L +++ V++ + D +P G
Sbjct: 1316 NSTQDIEEGQLLRGYVKSIQPSGVLLGLGPSVTGLARYSHVSQHSPTRNALYDKYLPEGK 1375
Query: 199 MVSTRVQSI--LENGVMLSFLTYFTGTVDIFHLQNTFP 234
+++ +V S+ EN V LSFL TG D+F P
Sbjct: 1376 LLTAKVLSLNRRENLVELSFLPGDTGKPDVFSASPRLP 1413
Score = 61 (26.5 bits), Expect = 2.2e-53, Sum P(3) = 2.2e-53
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 1312 EPLS-KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
EP + K+++ + S + EI N +L G ++G +K V L I++ N L G
Sbjct: 50 EPATIKKLKTDKRESSKFVREKFEILNEESLCEGMRILGCVKEVNELELVISLPN-GLQG 108
Query: 1371 LCHVSELSEDHVDNI 1385
V+E+ + + +
Sbjct: 109 CVQVTEICDAYTKKL 123
Score = 45 (20.9 bits), Expect = 7.0e-58, Sum P(3) = 7.0e-58
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 1335 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1394
I L+ + G ++ +++ V G + E + GL V S+ H E +G+K
Sbjct: 836 IQTLAEMTPGMVLDLEVQEVLEDGSVLFSEGP-VPGL--VLRASKYHRAGQEV--ESGQK 890
Query: 1395 VKVKILKVDKEKRRISLGMK 1414
KV IL VD K + + ++
Sbjct: 891 KKVVILNVDMLKLEVHVSLR 910
Score = 43 (20.2 bits), Expect = 1.1e-142, Sum P(3) = 1.1e-142
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
LSE+ +E YR GE+ + KEK+
Sbjct: 1480 LSEEEDSGVEVYYREGEEEVEETGMRPKEKQ 1510
>UNIPROTKB|F1S843 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
ArrayExpress:F1S843 Uniprot:F1S843
Length = 1876
Score = 897 (320.8 bits), Expect = 1.2e-142, Sum P(3) = 1.2e-142
Identities = 357/1394 (25%), Positives = 611/1394 (43%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILD--NEIEANEDNL---- 57
+++ GM++ G V EVNE +LVI NE A E+ L
Sbjct: 78 ESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYTKKLNEQVAQEEPLQDLV 137
Query: 58 -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVK 116
LP +F G LV C+V L K GK+ + E ++ GM+LT V
Sbjct: 138 GLPELFSPGMLVRCVVSSLGITKS--GKKDVKLSLNPKNVNKVLNPEALKPGMLLTGTVS 195
Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
S+EDHGY++ G+ FLP E N +K G L +++ + + VV L
Sbjct: 196 SLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKDAKLKVGQYLNCIIQEVKGSGGVVSL 255
Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
S VS + + + +++ L+PG++V +VQ + G+ L FL++FTG VD HL
Sbjct: 256 SIGNSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPLGLTLKFLSFFTGLVDFMHLDP 315
Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
T + N + V A +L V P +R V L+L P L P + + ++G + +
Sbjct: 316 KKAGTYFSN-----QPVRACVLCVHPRTRDVRLSLRPTFLQPGRPLTGLSCQQLGAVLED 370
Query: 289 SKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
+ T AY + ++ + + +K G+ + RI+ + +
Sbjct: 371 VPVQGFFGNAGATFRLKD---GTLAYARFNHLSNSKKAFKPETFKPGNIHKCRIIDYSRM 427
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+ + L+ S E + D+KPG +VKGKV+ + +G +V ++ L P H+++
Sbjct: 428 DEMVLLSLRTSVIEAQFLRYHDIKPGALVKGKVLTIKPYGMLVNMGREIRGLVPPMHLAD 487
Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
+ P KK+ VG E+ RVL ++KR+ +T KKTLV+SKL ++ YA+A L THG
Sbjct: 488 ILMKNPEKKYHVGDEVKCRVLLCDPEAKRLMMTLKKTLVESKLPAITCYADAKPGLQTHG 547
Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
+I +++ +GC V+FYN VQG P+ EL + +P S QVVK +++ P+ ++
Sbjct: 548 FILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPESGVVSCQVVKVVVLNCEPSKEKML 607
Query: 527 LSFMMK--PTRVSEDXXXXXXXXXXXXXXXXXXXXXXXX-----XIAKGYSKGTIPTEHL 579
LSF + P + SE + + +PT HL
Sbjct: 608 LSFRLSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLEVAVLPHNIRAFLPTPHL 667
Query: 580 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPN 637
+DH+ ++ ++ ++ G ++L L +LL K +L+++ + Q P S IHP
Sbjct: 668 SDHVANSPLLYHWLQAGDVLHRVLCLSETEGRVLLCRKPALVSAVEGGQDPKSFSEIHPG 727
Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
++ G+V +I + G F++F L+G AP++ D S + GQ+V + + +V+ E
Sbjct: 728 MLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEE 787
Query: 698 TGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVI 753
R+ LSL+ S C+ D S + LEE+ + + S L + + G V+
Sbjct: 788 KQRMLLSLRLSDCTLGDQATTSLLLLSQCLEEQQGVRSLMSNRDSVLIQTLAEMTPGMVL 847
Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVD 810
+ +V E + G V+ F E V G + + + AG VESG + IL+V + V
Sbjct: 848 DLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQEVESGQKKKVVILNVDMLKLEVH 905
Query: 811 LSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNH 870
+SL+ ++R + G +Q A+V+ ++E + V SL E H
Sbjct: 906 VSLRRDLVNRRTKKLRKG---------------GEYQ---AVVQHLEETFAVASLVETGH 947
Query: 871 SIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL----LKAIXXXXXX 925
++ S N T +F ++ GQ V T+ T G LL + K
Sbjct: 948 LAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLSTTEPGVT-GLLLAVEGPAAKRTMRQTRK 1006
Query: 926 XXXXXXXXXXYD--------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 971
D +G +V + IKP + + G G IH + +
Sbjct: 1007 DSETVDEDEEVDPALVVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIVGCIHASHI 1066
Query: 972 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL-- 1029
DD V + + K+G+ VTAR+I DMK +S + T+ E+ +
Sbjct: 1067 LDDVP-VGTSPTTKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSE 1122
Query: 1030 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1089
L E+ ++ + K+ A T++ LK + ++ E + + R +
Sbjct: 1123 LKEDGHTALNTHSVSPLEKIKQYKAGQTVTCFLK-KYNVVKKWLEVEIAPDIRGRIPL-- 1179
Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI-------HE---GDIVG 1139
L ++ K+L+ + FQ G + K + D+ + F+ H+ G++
Sbjct: 1180 ------LLMSLSFKVLKHPDKKFQIGQALKATVVGPDSSKAFLCLSLIGPHKMEKGEVAM 1233
Query: 1140 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1199
GR+ K+ + GL+V P +G++ + + VSD S PL ++ + +
Sbjct: 1234 GRVVKV-TPKEGLMVSF-P--FGKIGKVNIFH--VSDSFSE------TPLETFNLKKIER 1281
Query: 1200 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1259
C VL + V + LSLRSS TN S VD P + +D+ +++G
Sbjct: 1282 CYVLSNAGPV-----LTLSLRSS-----RTNPDTKSKIVD-P--EINSTQDIEEGQLLRG 1328
Query: 1260 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------EKEFPIGKLVAGRVLSVEP 1313
YVK++ G + L + S++S SP +K P GKL+ +VLS+
Sbjct: 1329 YVKSIQPSGVLLGLGPSVTGLARYSHVSQ---HSPTRNALYDKYLPEGKLLTAKVLSLNR 1385
Query: 1314 LSKRVEVTLKTSDS 1327
VE++ D+
Sbjct: 1386 RENLVELSFLPGDT 1399
Score = 602 (217.0 bits), Expect = 1.2e-142, Sum P(3) = 1.2e-142
Identities = 121/265 (45%), Positives = 173/265 (65%)
Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
P + D+F+RLV SSPNSS +W++YMAF L ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 1607 PESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 1666
Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
VA NLEN YG+ +E++ KVF+RA+QY +P KV L L +Y ++E+ + A EL +M+K
Sbjct: 1667 VALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLK 1724
Query: 1664 KFKHSCKVWXXXXXXXXXXXXEGVQ-AVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
+F+ VW G V+QRAL LP+ +H+ I++ A LEF+ G A+R
Sbjct: 1725 RFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAER 1784
Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXYL 1782
+++FE LS YPKRTD+WS+Y+D I+ G +R +FER I YL
Sbjct: 1785 AKAIFENTLSTYPKRTDVWSVYIDMIIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYL 1844
Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1845 DYEKQHGTEKDVQAVKAKALEYVEA 1869
Score = 161 (61.7 bits), Expect = 5.8e-65, Sum P(2) = 5.8e-65
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
+ D+ P +V+G V + G + + R++ V +L+D +++PEK++ +G V
Sbjct: 446 RYHDIKPGALVKGKVLTIKPYGMLVNMGREIRGLVPPMHLADILMKNPEKKYHVGDEVKC 505
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
RVL +P +KR+ +TLK + + + I ++ G G I RV+ YG + N
Sbjct: 506 RVLLCDPEAKRLMMTLKKTLVESKLPA-ITCYADAKPGLQTHGFILRVKDYGCIVKFYN- 563
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
++ GL ELS ++V + E+ + + VKV +L + K ++ L + S
Sbjct: 564 DVQGLVPKHELSAEYVPDPESGVVSCQVVKVVVLNCEPSKEKMLLSFRLS 613
Score = 130 (50.8 bits), Expect = 1.1e-61, Sum P(2) = 1.1e-61
Identities = 50/189 (26%), Positives = 88/189 (46%)
Query: 1234 LSTDV--DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGY 1290
LS+D ++ G +K L+ +V V + T G + +L + A + +LSD
Sbjct: 612 LSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLEVAVLPHNIRAFLPTPHLSDHV 671
Query: 1291 VESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIV 1347
SP G V RVL + RV + K + S + + S +H G ++
Sbjct: 672 ANSPLLYHWLQAGD-VLHRVLCLSETEGRVLLCRKPALVSAVEGGQDPKSFSEIHPGMLL 730
Query: 1348 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
IG ++ ++ YG+FI + L GL + +S+ V + + G+ V K+ VD+EK+
Sbjct: 731 IGFVRSIKDYGVFIQFPS-GLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQ 789
Query: 1408 RISLGMKSS 1416
R+ L ++ S
Sbjct: 790 RMLLSLRLS 798
Score = 111 (44.1 bits), Expect = 1.1e-59, Sum P(2) = 1.1e-59
Identities = 50/208 (24%), Positives = 96/208 (46%)
Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK-GCFI 1271
F + +L++++ G S+ + L + P K +EK E + G V VT K G +
Sbjct: 1196 FQIGQALKATVVGPDSSKAF-LCLSLIGPHK-MEKGE------VAMGRVVKVTPKEGLMV 1247
Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS----VEPLSKRVEVTLKTSDS 1327
KV + ++SD + E+P + F + K+ VLS V LS R T + S
Sbjct: 1248 SFPFGKIGKVNIFHVSDSFSETPLETFNLKKIERCYVLSNAGPVLTLSLRSSRTNPDTKS 1307
Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
+ EIN+ ++ G ++ G +K ++ G+ + + ++ GL S +S+ H
Sbjct: 1308 KIVDP-EINSTQDIEEGQLLRGYVKSIQPSGVLLGL-GPSVTGLARYSHVSQ-HSPTRNA 1364
Query: 1388 IYRA----GEKVKVKILKVDKEKRRISL 1411
+Y G+ + K+L +++ + + L
Sbjct: 1365 LYDKYLPEGKLLTAKVLSLNRRENLVEL 1392
Score = 103 (41.3 bits), Expect = 9.3e-58, Sum P(3) = 9.3e-58
Identities = 44/182 (24%), Positives = 72/182 (39%)
Query: 939 GSLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
G + + ++ P E L + F G G+++I V+D S F+ KI R
Sbjct: 1229 GEVAMGRVVKVTPKEGLMVSFPFGKIGKVNIFHVSDSFSETPLETFNLKKI-----ERCY 1283
Query: 998 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1057
SN + L P T S+I + D+ GQ + GYV + LL
Sbjct: 1284 VLSNAGPVLTLSLRSSRTNPD--TKSKIVDPEINSTQDIEEGQLLRGYVKSIQPSGVLLG 1341
Query: 1058 ISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1116
+ + + S + P+ + + GK +T VLS+N+ + L+ L P G
Sbjct: 1342 LGPSVTGLARYSHVSQHSPTRNALYDKYLPEGKLLTAKVLSLNRRENLVELSFLPGDTGK 1401
Query: 1117 SD 1118
D
Sbjct: 1402 PD 1403
Score = 102 (41.0 bits), Expect = 7.3e-58, Sum P(3) = 7.3e-58
Identities = 23/92 (25%), Positives = 46/92 (50%)
Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
G+ + ++ P M++ G+V+++ G FI L + +SD +V S F G
Sbjct: 715 GQDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEG 774
Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
+ V +V +V+ +R+ ++L+ SD Q+
Sbjct: 775 QTVVAKVTNVDEEKQRMLLSLRLSDCTLGDQA 806
Score = 89 (36.4 bits), Expect = 2.2e-57, Sum P(2) = 2.2e-57
Identities = 30/109 (27%), Positives = 54/109 (49%)
Query: 1304 VAGRVLSVE-PLSKRVEVTLKTSDSRTASQSE-------INNLSN--LHVGDIVIGQIKR 1353
V G +L+VE P +KR + DS T + E + + L +GD+V G +K
Sbjct: 985 VTGLLLAVEGPAAKRT-MRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDMVTGTVKS 1043
Query: 1354 VESYGLFITIENTNLVGLCHVSELSED-HVDNIETI-YRAGEKVKVKIL 1400
++ + +T+E+ +VG H S + +D V T + G+KV +++
Sbjct: 1044 IKPTHVVVTLED-GIVGCIHASHILDDVPVGTSPTTKLKVGKKVTARVI 1091
Score = 89 (36.4 bits), Expect = 2.2e-57, Sum P(2) = 2.2e-57
Identities = 44/208 (21%), Positives = 90/208 (43%)
Query: 1221 SSLDGMSSTNSSDLSTDVDTPGKHLEKI---EDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
SSL G++ + D+ ++ P K++ K+ E L P M++ G V ++ G + +
Sbjct: 154 SSL-GITKSGKKDVKLSLN-P-KNVNKVLNPEALKPGMLLTGTVSSLEDHGYLVDIGVSG 210
Query: 1278 DAKVLLSNLSDGYVESPEKE--FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1335
L + Y+ K+ +G+ + + V+ V +++ S+ A +E
Sbjct: 211 ARAFLPLQKAQEYIRQKNKDAKLKVGQYLNCIIQEVKGSGGVVSLSIGNSEVSAAIATEE 270
Query: 1336 NN--LSNLHVGDIVIGQIKRVESYGLFITIEN--TNLVGLCHVSELSEDHVDNIETIYRA 1391
N L+NL G +V Q+++V GL + + T LV H+ Y +
Sbjct: 271 QNWTLNNLLPGLVVKAQVQKVTPLGLTLKFLSFFTGLVDFMHLDPKKAG-------TYFS 323
Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYFK 1419
+ V+ +L V R + L ++ ++ +
Sbjct: 324 NQPVRACVLCVHPRTRDVRLSLRPTFLQ 351
Score = 86 (35.3 bits), Expect = 2.3e-88, Sum P(3) = 2.3e-88
Identities = 23/94 (24%), Positives = 44/94 (46%)
Query: 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
DA R FE + + P + VW Y+ ++ ++ R I ER + +++ + K
Sbjct: 1781 DAERAKAIFENTLSTYPKRTDVWSVYIDMIIKHGSQKEVRDIFERVIH-LSLAPKRMKF- 1838
Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
+ Y + E ++G + VK +AL+Y + K
Sbjct: 1839 FFKRYLDYEKQHGTEKDVQAVKA--KALEYVEAK 1870
Score = 73 (30.8 bits), Expect = 1.3e-54, Sum P(3) = 1.3e-54
Identities = 29/98 (29%), Positives = 49/98 (50%)
Query: 144 NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC--VTKD--LKGISIDLLVP-GM 198
NS D++ G LL+G V+SI + ++ L +++ V++ + D +P G
Sbjct: 1315 NSTQDIEEGQLLRGYVKSIQPSGVLLGLGPSVTGLARYSHVSQHSPTRNALYDKYLPEGK 1374
Query: 199 MVSTRVQSI--LENGVMLSFLTYFTGTVDIFHLQNTFP 234
+++ +V S+ EN V LSFL TG D+F P
Sbjct: 1375 LLTAKVLSLNRRENLVELSFLPGDTGKPDVFSASPRLP 1412
Score = 61 (26.5 bits), Expect = 2.3e-53, Sum P(3) = 2.3e-53
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 1312 EPLS-KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
EP + K+++ + S + EI N +L G ++G +K V L I++ N L G
Sbjct: 50 EPATIKKLKTDKRESSKFVREKFEILNEESLCEGMRILGCVKEVNELELVISLPN-GLQG 108
Query: 1371 LCHVSELSEDHVDNI 1385
V+E+ + + +
Sbjct: 109 CVQVTEICDAYTKKL 123
Score = 45 (20.9 bits), Expect = 7.3e-58, Sum P(3) = 7.3e-58
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 1335 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1394
I L+ + G ++ +++ V G + E + GL V S+ H E +G+K
Sbjct: 835 IQTLAEMTPGMVLDLEVQEVLEDGSVLFSEGP-VPGL--VLRASKYHRAGQEV--ESGQK 889
Query: 1395 VKVKILKVDKEKRRISLGMK 1414
KV IL VD K + + ++
Sbjct: 890 KKVVILNVDMLKLEVHVSLR 909
Score = 43 (20.2 bits), Expect = 1.2e-142, Sum P(3) = 1.2e-142
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
LSE+ +E YR GE+ + KEK+
Sbjct: 1496 LSEEEDSGVEVYYREGEEEVEETGMRPKEKQ 1526
>UNIPROTKB|F1P3T9 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 EMBL:AADN02030831
IPI:IPI00603042 Ensembl:ENSGALT00000013446 Uniprot:F1P3T9
Length = 1841
Score = 739 (265.2 bits), Expect = 2.7e-135, Sum P(3) = 2.7e-135
Identities = 208/744 (27%), Positives = 349/744 (46%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICXXXXXXXX---XXXXXXXXXILDNEI---EANED-N 56
+ + GM G + EV +LVI +L ++ E ED N
Sbjct: 84 KELCEGMLFLGCIKEVTVFELVISLPNGLTGFVPVTHISDAYSELLSKQVTQGELLEDLN 143
Query: 57 LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVK 116
L ++ G LV C+V ++ K G+R I + GM+L+ +V
Sbjct: 144 SLSDLYSPGMLVRCVVTSVE--KSADGRRSIKLSINPKSVNKGLSASALTSGMLLSGFVS 201
Query: 117 SIEDHGYILHFGLPSFTGFLP----RNNL-AENSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
S+EDHGY++ G+ FLP +N + A G D+K G L V+ + +VV L
Sbjct: 202 SVEDHGYLIDIGVSGTHAFLPHQKAQNYIKAVKRGSDLKIGQSLNCVIEEVKNEGRVVRL 261
Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
S+D V+ + + + ++ L+PG++V +VQ + GV L+FL+ FTG VD H+
Sbjct: 262 SADRSEVAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGVSLTFLSSFTGIVDFMHVDP 321
Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
+TN Y+ ++ V A IL PTS+ V LTL LH P+ + ++G + ++
Sbjct: 322 E-KSTN----YSPNQMVKACILSTHPTSKVVRLTLRQAFLHPGGSPNQLSNDRIGAVVEE 376
Query: 289 SKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
S + + A+ +++ +K G + RI+ + +
Sbjct: 377 STVKAFYKQFGAVFQLDDGML---AFARPKHLSKTRKSFKPAAFKAGCKHKCRIIDYSLM 433
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+ + LK E + D+ G V++GKV+++ G V+ G+K L P H+++
Sbjct: 434 DEMCIVSLKHQIIEARFLRYEDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLAD 493
Query: 409 FEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
+ +P KK+ VG E+ RVL K++ +T KKTLV+SKL +LSSY +A LITHG
Sbjct: 494 VILKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLVQSKLPVLSSYEDAEPGLITHG 553
Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
++ + GC V+FYN V+G P++EL +P P ++H GQVVK ++ P R+
Sbjct: 554 FVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQERLL 613
Query: 527 LSFMMKPTRVSEDXXX----------XXXXXXXXXXXXXXXXXXXXXXIAK--GYSKGTI 574
LSF + V E I + G +
Sbjct: 614 LSFRLSSRTVPEGRSECIPKKKQQVKYQIGEMVDVEVLKKNENGLEVSILEDGGNVIAWL 673
Query: 575 PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDAS 632
PT HL+D + ++ ++ ++ G +++ L ++ ++L K ++I++ Q Q+ S
Sbjct: 674 PTVHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVRSFS 733
Query: 633 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
I P ++ GYV ++ G FV F +TG AP+ D D + VGQ+V + ++
Sbjct: 734 EIQPGVLLIGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVM 793
Query: 693 DVNSETGRITLSLKQSCCSSTDAS 716
++ E R+ LSLK S CSS D++
Sbjct: 794 SIDEEKQRVLLSLKVSECSSGDSA 817
Score = 582 (209.9 bits), Expect = 2.7e-135, Sum P(3) = 2.7e-135
Identities = 121/270 (44%), Positives = 169/270 (62%)
Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
P++ D+F+RLV SSPNSS +W++YMAF L ++EKAR++AERAL+TI REE EKLN+W
Sbjct: 1572 PQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQEKLNVW 1631
Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
VA NLEN YG EE ++KVF+RA+QY +P KV L +Y +E+ K A+EL + M++
Sbjct: 1632 VALLNLENMYGT--EETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLR 1689
Query: 1664 KFKHSCKVWXXXXXXXXXXX-XEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
+F+ VW E +++RAL +LP +H+ IS+ A LEF+ G +
Sbjct: 1690 RFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFRFGDPEH 1749
Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXYL 1782
+++FE L+ YPKRTD+WSIY+D I+ G IR +FER I YL
Sbjct: 1750 AKALFESTLNSYPKRTDIWSIYMDIMIKQGSQKEIRDIFERVIHLNLAPKKMKFFFKRYL 1809
Query: 1783 EYEKSVGEEERIEYVKQKAMEYVE--STLA 1810
+YEK G E + VK A+EYVE S+LA
Sbjct: 1810 DYEKKYGTTETVMAVKTAALEYVEAKSSLA 1839
Score = 251 (93.4 bits), Expect = 8.0e-84, Sum P(4) = 8.0e-84
Identities = 140/650 (21%), Positives = 263/650 (40%)
Query: 574 IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDA 631
+PT HL+D + ++ ++ ++ G +++ L ++ ++L K ++I++ Q Q+
Sbjct: 673 LPTVHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVRSF 732
Query: 632 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
S I P ++ GYV ++ G FV F +TG AP+ D D + VGQ+V + +
Sbjct: 733 SEIQPGVLLIGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKV 792
Query: 692 LDVNSETGRITLSLKQSCCSSTDA-----SFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 746
+ ++ E R+ LSLK S CSS D+ S + ++F E+I L + + V
Sbjct: 793 MSIDEEKQRVLLSLKVSECSSGDSAAESFSLLNQYFKEVEEIRNLLRRREESGLARCVCE 852
Query: 747 FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVA 803
+ G ++ V + + G + F V G T + L G V G + +L V
Sbjct: 853 LVPGKELQLVVQDVMEDGSAL-FSGGC-VRGLTVTATRYHLGGKNVIPGEKAKGLVLHVD 910
Query: 804 KAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVL 863
V +SL+ + + + H AIV+ + E + ++
Sbjct: 911 AITSKVYVSLREELLKKRAKQRLTKNSQ--------------HP---AIVQHIAEEFAIV 953
Query: 864 SLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL------ 916
SL + S +N T +F ++ GQ + AT + + ++ G LL +
Sbjct: 954 SLLDSGRLAAIPIASHFNDTFRFDSEKLKVGQRIYAT-LKMVKANDLGVLLAVQDPAKKN 1012
Query: 917 -----KAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 971
+ +G +V + +KP + + G IH + +
Sbjct: 1013 AFVRDRKESETALEETLAAAVKHSLSLGDIVTGTVKSVKPTHVTVAIDDKLTGSIHASRI 1072
Query: 972 NDDKSNVVENLFSNF--KIGQTVTARIIAKSN----------KPDMKKSFLWELSIKPSM 1019
D+ V + F + K GQ VTAR+I + P +S + ELSI+PS
Sbjct: 1073 LDE---VPIHSFPTYTLKAGQKVTARVIGGRDVNTHRYLPITHPHFTRS-VPELSIRPSE 1128
Query: 1020 LT--VSEIGSKLLFEECDVSIGQRVTGYVYKVDN--EWALLTISRHLKAQLFILDSAYEP 1075
+ V + + + GQ VT +V K + W + ++ ++ ++ L +
Sbjct: 1129 IEGEVETMRDDTREKLGPYNTGQTVTCFVRKYNTLKNWLEVEVTPDVRGRVPRLLLSLNT 1188
Query: 1076 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG 1135
L+ ++ F G+A++ V + + L L L Q + G
Sbjct: 1189 KVLKHPEKNFKNGQALSATVTGTDATETNLFLSLTGIQS-----------------LEPG 1231
Query: 1136 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
I G ++K++ +G L + + G+V L + PLS + G+
Sbjct: 1232 TITVGMVAKMIPHIG-LTITLPGGKAGKVSIFHLSDKYTESPLSDFKIGK 1280
Score = 159 (61.0 bits), Expect = 2.7e-135, Sum P(3) = 2.7e-135
Identities = 49/147 (33%), Positives = 75/147 (51%)
Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
PLS + G+ V+C +L G ++LSLR S ++ NS + DV+ +
Sbjct: 1272 PLSDFKIGKVVRCYILS---NENGK--IQLSLRQSR--LNPRNSRKVE-DVE-----ITC 1318
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLV 1304
I+D+ +V+GYVK+VT G F LS L ++L N+S +V+ EK P GKL+
Sbjct: 1319 IKDVKKGQLVRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLL 1378
Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
+VL V VE++L D+ S
Sbjct: 1379 TAKVLDVNKKENHVELSLLPEDTEMPS 1405
Score = 157 (60.3 bits), Expect = 4.5e-135, Sum P(3) = 4.5e-135
Identities = 57/210 (27%), Positives = 102/210 (48%)
Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV-KNVTSKGCFIM 1272
H E + ++ +S+T + +T+ + L I+ L P I G V K + G I
Sbjct: 1193 HPEKNFKNG-QALSATVTGTDATETNL-FLSLTGIQSLEPGTITVGMVAKMIPHIGLTIT 1250
Query: 1273 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS-----DS 1327
L KV + +LSD Y ESP +F IGK+V +LS E + +++++L+ S +S
Sbjct: 1251 LPGGKAGKVSIFHLSDKYTESPLSDFKIGKVVRCYILSNE--NGKIQLSLRQSRLNPRNS 1308
Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
R EI + ++ G +V G +K V G+F + + +L+G +S V +
Sbjct: 1309 RKVEDVEITCIKDVKKGQLVRGYVKSVTPSGVFFGL-SASLLGRILFQNVSPYFVQK-HS 1366
Query: 1388 IYRA----GEKVKVKILKVDKEKRRISLGM 1413
+Y G+ + K+L V+K++ + L +
Sbjct: 1367 LYEKYLPEGKLLTAKVLDVNKKENHVELSL 1396
Score = 157 (60.3 bits), Expect = 1.2e-66, Sum P(5) = 1.2e-66
Identities = 46/173 (26%), Positives = 88/173 (50%)
Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
+ ED+ ++QG V ++ G + ++ + V +L+D ++ PEK++ +G V
Sbjct: 452 RYEDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLADVILKQPEKKYNVGDEVRC 511
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH---VGDIVIGQIKRVESYGLFITI 1363
RVL P K++ +TLK +T QS++ LS+ G I G + +G +
Sbjct: 512 RVLECNPAEKKLFLTLK----KTLVQSKLPVLSSYEDAEPGLITHGFVVCAREFGCIVKF 567
Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
N ++ GL +ELS + + + ++ G+ VKV +LK + ++ R+ L + S
Sbjct: 568 YN-DVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQERLLLSFRLS 619
Score = 116 (45.9 bits), Expect = 2.8e-64, Sum P(6) = 2.8e-64
Identities = 45/182 (24%), Positives = 82/182 (45%)
Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
L ED P +I G+V GC + + V + LS + P+K F G++V
Sbjct: 539 LSSYEDAEPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVV 598
Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTASQ--SEI----NNLSNLHVGDIVIGQIKRVESYG 1358
VL EP +R+ ++ + S SRT + SE +G++V ++ + G
Sbjct: 599 KVMVLKCEPQQERLLLSFRLS-SRTVPEGRSECIPKKKQQVKYQIGEMVDVEVLKKNENG 657
Query: 1359 LFITI--ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV--KILKVDKEKRRISLGMK 1414
L ++I + N++ LS D V N + ++ ++ V +++ + + RI L K
Sbjct: 658 LEVSILEDGGNVIAWLPTVHLS-DFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRK 716
Query: 1415 SS 1416
S+
Sbjct: 717 SA 718
Score = 114 (45.2 bits), Expect = 4.5e-64, Sum P(6) = 4.5e-64
Identities = 27/114 (23%), Positives = 59/114 (51%)
Query: 1304 VAGRVLSVEPLSKRVEVTLKTSD-SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
V RV+ + R+ + K++ S + + + S + G ++IG +++V +G+F+
Sbjct: 697 VLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVRSFSEIQPGVLLIGYVRKVMPFGVFVE 756
Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ GL +S+ V + + + G+ V K++ +D+EK+R+ L +K S
Sbjct: 757 FP-FGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLSLKVS 809
Score = 108 (43.1 bits), Expect = 3.5e-63, Sum P(7) = 3.5e-63
Identities = 28/118 (23%), Positives = 60/118 (50%)
Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
+ ++ P +++ GYV+ V G F+ + ++SD +V + F +G+ V
Sbjct: 729 VRSFSEIQPGVLLIGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTV 788
Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTA-SQSEINNLSNLHVGDI--VIGQIKRVESYGL 1359
+V+S++ +RV ++LK S+ + S +E +L N + ++ + ++R E GL
Sbjct: 789 IAKVMSIDEEKQRVLLSLKVSECSSGDSAAESFSLLNQYFKEVEEIRNLLRRREESGL 846
Score = 102 (41.0 bits), Expect = 2.8e-129, Sum P(3) = 2.8e-129
Identities = 46/179 (25%), Positives = 79/179 (44%)
Query: 939 GSLVQAEITEIKP-LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
G++ + ++ P + L + G G++ I ++D E+ S+FKIG+ V I+
Sbjct: 1231 GTITVGMVAKMIPHIGLTITLPGGKAGKVSIFHLSD---KYTESPLSDFKIGKVVRCYIL 1287
Query: 998 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE--C--DVSIGQRVTGYVYKVDNEW 1053
+ N +LS++ S L K+ E C DV GQ V GYV V
Sbjct: 1288 SNENGKI-------QLSLRQSRLNPRN-SRKVEDVEITCIKDVKKGQLVRGYVKSVTPSG 1339
Query: 1054 ALLTISRHLKAQLFILD-SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1111
+S L ++ + S Y + +++ GK +T VL +NK++ + L L P
Sbjct: 1340 VFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLDVNKKENHVELSLLP 1398
Score = 88 (36.0 bits), Expect = 2.1e-126, Sum P(4) = 2.1e-126
Identities = 45/181 (24%), Positives = 79/181 (43%)
Query: 634 IHPNSVVHGYVCNII-ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
+ P ++ G V +I G + G G D + +G+ VR IL
Sbjct: 1228 LEPGTITVGMVAKMIPHIGLTITLPGGKAGKVSIFHLSDKYTESPLSDFKIGKVVRCYIL 1287
Query: 693 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 752
++E G+I LSL+QS + ++ +++ +E I ++ K +V+ V
Sbjct: 1288 --SNENGKIQLSLRQSRLNPRNSRKVED---VE--ITCIKDVKKGQLVRGYVKSVTPSGV 1340
Query: 753 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
G ++ G ++ F+ S Y F+ H L + G ++ A +LDV K E V+LS
Sbjct: 1341 FFGL--SASLLGRIL-FQNVSP-Y-FVQKHSLYEKYLPEGKLLTAKVLDVNKKENHVELS 1395
Query: 813 L 813
L
Sbjct: 1396 L 1396
Score = 88 (36.0 bits), Expect = 9.5e-54, Sum P(3) = 9.5e-54
Identities = 71/299 (23%), Positives = 131/299 (43%)
Query: 1100 KEKKLLRLVLRPFQD-GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
K+KK + P +D IS + + I + EG + G I ++ V LV+ +
Sbjct: 59 KQKKFKADIKAPAKDIAISIEPLTIKE------LCEGMLFLGCIKEVT--VFELVISLPN 110
Query: 1159 HLYGRVHFTELKNICVSDPLSGY-DEGQF----DPLSG-YDEGQFVKCKVLEISRTVRGT 1212
L G V T + + S+ LS +G+ + LS Y G V+C V + ++ G
Sbjct: 111 GLTGFVPVTHISD-AYSELLSKQVTQGELLEDLNSLSDLYSPGMLVRCVVTSVEKSADGR 169
Query: 1213 FHVELSL--RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
++LS+ +S G+S+ S L++ + G + +ED GY+ ++ G
Sbjct: 170 RSIKLSINPKSVNKGLSA---SALTSGMLLSG-FVSSVED-------HGYLIDIGVSGTH 218
Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
L + A+ + + G + IG+ + + V+ + V ++ S+ +
Sbjct: 219 AFLPHQ-KAQNYIKAVKRG------SDLKIGQSLNCVIEEVKNEGRVVRLSADRSEVAAS 271
Query: 1331 SQSEINN--LSNLHVGDIVIGQIKRVESYGLFITIEN--TNLVGLCHVS-ELSEDHVDN 1384
+E N LSNL G +V Q+++V G+ +T + T +V HV E S ++ N
Sbjct: 272 IATEQQNWTLSNLLPGLVVKAQVQKVAPLGVSLTFLSSFTGIVDFMHVDPEKSTNYSPN 330
Score = 84 (34.6 bits), Expect = 2.2e-127, Sum P(3) = 2.2e-127
Identities = 27/99 (27%), Positives = 50/99 (50%)
Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL--SNLHVGDIVIGQIKRVESYGLFITI 1363
G +L+V+ +K+ +S TA + + +L +GDIV G +K V+ + + I
Sbjct: 1000 GVLLAVQDPAKKNAFVRDRKESETALEETLAAAVKHSLSLGDIVTGTVKSVKPTHVTVAI 1059
Query: 1364 ENTNLVGLCHVSE-LSEDHVDNIETI-YRAGEKVKVKIL 1400
++ L G H S L E + + T +AG+KV +++
Sbjct: 1060 DD-KLTGSIHASRILDEVPIHSFPTYTLKAGQKVTARVI 1097
Score = 83 (34.3 bits), Expect = 2.8e-127, Sum P(3) = 2.8e-127
Identities = 61/286 (21%), Positives = 119/286 (41%)
Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
GDIV G + + + V I L G +H + + + P+ + P
Sbjct: 1040 GDIVTGTVKSVKPT--HVTVAIDDKLTGSIHASRILD---EVPIHSF------PTYTLKA 1088
Query: 1195 GQFVKCKVLEISRTVRGTFHVELS---LRSSLDGMSSTNSSDLSTDVDTPGKHL-EKIED 1250
GQ V +V+ R V ++ ++ S+ +S S++ +V+T EK+
Sbjct: 1089 GQKVTARVIG-GRDVNTHRYLPITHPHFTRSVPELS-IRPSEIEGEVETMRDDTREKLGP 1146
Query: 1251 LSPNMIVQGYVK--NVTSKGCFIMLSRKLDAKV--LLSNLSDGYVESPEKEFPIGKLVAG 1306
+ V +V+ N + ++ + +V LL +L+ ++ PEK F G+ ++
Sbjct: 1147 YNTGQTVTCFVRKYNTLKNWLEVEVTPDVRGRVPRLLLSLNTKVLKHPEKNFKNGQALSA 1206
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI-KRVESYGLFITIEN 1365
V + + ++L T QS L G I +G + K + GL IT+
Sbjct: 1207 TVTGTDATETNLFLSL------TGIQS-------LEPGTITVGMVAKMIPHIGLTITLPG 1253
Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
G + LS+ + ++ + ++ G+ V+ IL + K ++SL
Sbjct: 1254 GK-AGKVSIFHLSDKYTESPLSDFKIGKVVRCYILSNENGKIQLSL 1298
Score = 83 (34.3 bits), Expect = 4.6e-55, Sum P(5) = 4.6e-55
Identities = 38/177 (21%), Positives = 77/177 (43%)
Query: 1228 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1287
S + S+++ + T ++ + +L P ++V+ V+ V G + L + + +
Sbjct: 262 SADRSEVAASIATEQQNWT-LSNLLPGLVVKAQVQKVAPLGVSLTF---LSS---FTGIV 314
Query: 1288 DGYVESPEKE--FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1345
D PEK + ++V +LS P SK V +TL+ + N LSN +G
Sbjct: 315 DFMHVDPEKSTNYSPNQMVKACILSTHPTSKVVRLTLRQAFLHPGGSP--NQLSNDRIGA 372
Query: 1346 IVI-GQIKRV-ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
+V +K + +G +++ ++ LS+ ++AG K K +I+
Sbjct: 373 VVEESTVKAFYKQFGAVFQLDD-GMLAFARPKHLSKTRKSFKPAAFKAGCKHKCRII 428
Score = 79 (32.9 bits), Expect = 1.7e-52, Sum P(3) = 1.7e-52
Identities = 48/187 (25%), Positives = 84/187 (44%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG- 1306
I++L M+ G +K VT I L L V ++++SD Y E K+ G+L+
Sbjct: 83 IKELCEGMLFLGCIKEVTVFELVISLPNGLTGFVPVTHISDAYSELLSKQVTQGELLEDL 142
Query: 1307 RVLS--VEP-LSKRVEVTL--KTSDSRTASQSEIN--------NLSNLHVGDIVIGQIKR 1353
LS P + R VT K++D R + + IN + S L G ++ G +
Sbjct: 143 NSLSDLYSPGMLVRCVVTSVEKSADGRRSIKLSINPKSVNKGLSASALTSGMLLSGFVSS 202
Query: 1354 VESYGLFITI--ENTNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRI 1409
VE +G I I T+ L H + +++++ ++ + + G+ + I +V E R +
Sbjct: 203 VEDHGYLIDIGVSGTHAF-LPH--QKAQNYIKAVKRGSDLKIGQSLNCVIEEVKNEGRVV 259
Query: 1410 SLGMKSS 1416
L S
Sbjct: 260 RLSADRS 266
Score = 78 (32.5 bits), Expect = 1.7e-68, Sum P(6) = 1.7e-68
Identities = 32/129 (24%), Positives = 61/129 (47%)
Query: 939 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
G +V+A++ ++ PL + L F F G + V+ +KS +N+ Q V A I++
Sbjct: 287 GLVVKAQVQKVAPLGVSLTFLSSFTGIVDFMHVDPEKS-------TNYSPNQMVKACILS 339
Query: 999 -----KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEW 1053
K + ++++FL P+ L+ IG+ + EE V + G V+++D+
Sbjct: 340 THPTSKVVRLTLRQAFLHPGG-SPNQLSNDRIGA--VVEESTVKAFYKQFGAVFQLDDGM 396
Query: 1054 ALLTISRHL 1062
+HL
Sbjct: 397 LAFARPKHL 405
Score = 76 (31.8 bits), Expect = 2.2e-52, Sum P(5) = 2.2e-52
Identities = 34/147 (23%), Positives = 59/147 (40%)
Query: 568 GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL 627
G G + HL+D + + S K G + + +L NE+ + LS + S +N
Sbjct: 1253 GGKAGKVSIFHLSDKYTESPL--SDFKIG-KVVRCYILSNENGKIQLSLRQSRLNPRNSR 1309
Query: 628 PSD------ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG--FAPRSKAVDGQRADLSK 679
+ + +V GYV ++ +G F L G Q+ L +
Sbjct: 1310 KVEDVEITCIKDVKKGQLVRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYE 1369
Query: 680 TYYV-GQSVRSNILDVNSETGRITLSL 705
Y G+ + + +LDVN + + LSL
Sbjct: 1370 KYLPEGKLLTAKVLDVNKKENHVELSL 1396
Score = 73 (30.8 bits), Expect = 2.5e-66, Sum P(5) = 2.5e-66
Identities = 45/219 (20%), Positives = 92/219 (42%)
Query: 939 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
G ++Q ++ +KP+ +++K G G + + D +++ + +G V R++
Sbjct: 459 GDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLADV---ILKQPEKKYNVGDEVRCRVL- 514
Query: 999 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1058
+ N P KK FL ++K +++ S++ +E D G G+V ++
Sbjct: 515 ECN-PAEKKLFL---TLKKTLVQ-SKLPVLSSYE--DAEPGLITHGFVVCAREFGCIVKF 567
Query: 1059 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1118
+K + + + EP + + FH G+ V VL +++ L L R + +
Sbjct: 568 YNDVKGLVPKNELSSEPISCPD--KVFHDGQVVKVMVLKCEPQQERLLLSFRLSSRTVPE 625
Query: 1119 -KTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1156
++ I Q G++V + K GL V I
Sbjct: 626 GRSECIPKKKQQVKYQIGEMVDVEVLK--KNENGLEVSI 662
Score = 72 (30.4 bits), Expect = 7.2e-52, Sum P(5) = 7.2e-52
Identities = 25/116 (21%), Positives = 49/116 (42%)
Query: 329 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA-VDSF 387
EK +K G + + G T + + F L S ++PG + G V +
Sbjct: 1195 EKNFKNGQALSATVTG--------TDATETNLFLSLTGIQS-LEPGTITVGMVAKMIPHI 1245
Query: 388 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKT 443
G + PGG + H+S+ P FK+G + +L ++ +I ++ +++
Sbjct: 1246 GLTITLPGGKAGKVSIFHLSDKYTESPLSDFKIGKVVRCYILSNENGKIQLSLRQS 1301
Score = 63 (27.2 bits), Expect = 1.7e-68, Sum P(6) = 1.7e-68
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
IH GD++ G++ L +G + V++ + G V L ++ + P Y+ G
Sbjct: 456 IHTGDVMQGKVLS-LKPIG-MQVKVTDGIKGLVPSMHLADVILKQPEKKYNVG------- 506
Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1223
DE V+C+VLE + + F L+L+ +L
Sbjct: 507 -DE---VRCRVLECNPAEKKLF---LTLKKTL 531
Score = 61 (26.5 bits), Expect = 4.8e-51, Sum P(5) = 4.8e-51
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 410 EIVK-PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
+++K P K FK G L V G + T T+ L S L + S T IT G +
Sbjct: 1189 KVLKHPEKNFKNGQALSATVTGTDA---TETN---LFLS-LTGIQSLEPGT---ITVGMV 1238
Query: 469 TKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRIN 526
K+ H G + G G L D E P S + +G+VV+C I+S+ + +I
Sbjct: 1239 AKMIPHIGLTITLPGGKAGKVSIFHLS-DKYTESPLSDFKIGKVVRCYILSN--ENGKIQ 1295
Query: 527 LS 528
LS
Sbjct: 1296 LS 1297
Score = 60 (26.2 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 34/140 (24%), Positives = 60/140 (42%)
Query: 62 FHVGQLVSCIVLQLDDDKKEIGKRKIWXX---XXXXXXXXXXXXETVQEGMVLTAYVKSI 118
F +G++V C +L ++ K ++ R+ + V++G ++ YVKS+
Sbjct: 1276 FKIGKVVRCYILSNENGKIQLSLRQSRLNPRNSRKVEDVEITCIKDVKKGQLVRGYVKSV 1335
Query: 119 EDHGYILHFGLP-SFTGFLPRNNLA----ENSGIDVK--P-GLLLQGVVRSIDRTRKVVY 170
G + FGL S G + N++ + + K P G LL V +++ V
Sbjct: 1336 TPSG--VFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLDVNKKENHVE 1393
Query: 171 LSSDP-DTVSKCVTKDLKGI 189
LS P DT V + G+
Sbjct: 1394 LSLLPEDTEMPSVLPESLGL 1413
Score = 58 (25.5 bits), Expect = 1.7e-68, Sum P(6) = 1.7e-68
Identities = 31/140 (22%), Positives = 61/140 (43%)
Query: 583 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 642
LE + + PG ++ +S++ S K S+ + AS + ++ G
Sbjct: 139 LEDLNSLSDLYSPGMLVRCVVTSVEKSADGRRSIKLSINPKSVNKGLSASALTSGMLLSG 198
Query: 643 YVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGR 700
+V ++ + G + + F P KA + +A +GQS+ I +V +E GR
Sbjct: 199 FVSSVEDHGYLIDIGVSGTHAFLPHQKAQNYIKAVKRGSDLKIGQSLNCVIEEVKNE-GR 257
Query: 701 IT-LSLKQSCCSSTDASFMQ 719
+ LS +S +++ A+ Q
Sbjct: 258 VVRLSADRSEVAASIATEQQ 277
Score = 56 (24.8 bits), Expect = 8.0e-84, Sum P(4) = 8.0e-84
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
T ++ GM+ G + V F ++ P G+ P+ H+S+
Sbjct: 82 TIKELCEGMLFLGCIKEVTVFELVISLPNGLTGFVPVTHISD 123
Score = 55 (24.4 bits), Expect = 1.6e-65, Sum P(6) = 1.6e-65
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 720 EHFLLEEKIAMLQSSKHNGSELKWV--EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG 777
++ L++E + S KH E +++ E G V++GKV G+ V + + G
Sbjct: 429 DYSLMDEMCIV--SLKHQIIEARFLRYEDIHTGDVMQGKVLSLKPIGMQVKVTD--GIKG 484
Query: 778 FITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFI 818
+ LA ++ G ++ +L+ AE+ + L+LK +
Sbjct: 485 LVPSMHLADVILKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLV 532
Score = 55 (24.4 bits), Expect = 1.6e-65, Sum P(6) = 1.6e-65
Identities = 57/268 (21%), Positives = 105/268 (39%)
Query: 868 YNHSIGYASVSDYNTQKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLK----AIXX 921
YN G ++ +++ P K F +GQ + VM L RLLL + +
Sbjct: 568 YNDVKGLVPKNELSSEPISCPDKVFHDGQ--VVKVMVLKCEPQQERLLLSFRLSSRTVPE 625
Query: 922 XXXXXXXXXXXXXXYDVGSLVQAEITEIKP--LELR-LKFGIGFHGRIHITEVNDDKSNV 978
Y +G +V E+ + LE+ L+ G + ++D +N
Sbjct: 626 GRSECIPKKKQQVKYQIGEMVDVEVLKKNENGLEVSILEDGGNVIAWLPTVHLSDFVANS 685
Query: 979 VENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1038
+ L+ + G V R++ S+K D + L S S + ++ F E +
Sbjct: 686 -KLLWHCLQEGD-VLPRVMCLSDKGD--RIILCRKSAVISAVQEEQVVRS--FSE--IQP 737
Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF----QRRFHIGKAVTGH 1094
G + GYV KV + ++ + A + S +F + F +G+ V
Sbjct: 738 GVLLIGYVRKV------MPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAK 791
Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVD 1122
V+SI++EK+ + L L+ + D +
Sbjct: 792 VMSIDEEKQRVLLSLKVSECSSGDSAAE 819
Score = 53 (23.7 bits), Expect = 1.0e-61, Sum P(4) = 1.0e-61
Identities = 25/87 (28%), Positives = 37/87 (42%)
Query: 194 LVPGMMVSTRVQSILENGVML---SFLTYFTGTVDIFHL--QNTFPTTNWKNDYNQHKKV 248
LVPG + VQ ++E+G L + T T +HL +N P +K
Sbjct: 853 LVPGKELQLVVQDVMEDGSALFSGGCVRGLTVTATRYHLGGKNVIPG----------EKA 902
Query: 249 NARILFVDPTSRAVGLTLNPYLLHNRA 275
+L VD + V ++L LL RA
Sbjct: 903 KGLVLHVDAITSKVYVSLREELLKKRA 929
Score = 52 (23.4 bits), Expect = 2.0e-62, Sum P(3) = 2.0e-62
Identities = 38/154 (24%), Positives = 61/154 (39%)
Query: 108 GMVLTAYVKSIEDHGYILHFGL-PSFTGFLPRNNLAENSGI------DVKPGLLLQGVVR 160
G +T +V+ L + P G +PR L+ N+ + + K G L V
Sbjct: 1150 GQTVTCFVRKYNTLKNWLEVEVTPDVRGRVPRLLLSLNTKVLKHPEKNFKNGQALSATVT 1209
Query: 161 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN-GVMLSFLTY 219
D T ++LS L GI L PG + V ++ + G+ ++
Sbjct: 1210 GTDATETNLFLS-------------LTGIQS--LEPGTITVGMVAKMIPHIGLTITLPGG 1254
Query: 220 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 253
G V IFHL + + T + +D+ K V IL
Sbjct: 1255 KAGKVSIFHLSDKY-TESPLSDFKIGKVVRCYIL 1287
Score = 52 (23.4 bits), Expect = 1.3e-61, Sum P(4) = 1.3e-61
Identities = 28/121 (23%), Positives = 51/121 (42%)
Query: 108 GMVLTAYVKSIEDHGYILHFG--LPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT 165
G L V+ + + G L G + T R +L G +V PG +G+V +D
Sbjct: 856 GKELQLVVQDVMEDGSALFSGGCVRGLTVTATRYHLG---GKNVIPGEKAKGLVLHVDAI 912
Query: 166 RKVVYLSSDPDTVSKCVTKDL-KGISIDLLVPGMMVSTRVQSILENGVM--LSFLTYFTG 222
VY+S + + K + L K +V + + S+L++G + + ++F
Sbjct: 913 TSKVYVSLREELLKKRAKQRLTKNSQHPAIVQHIAEEFAIVSLLDSGRLAAIPIASHFND 972
Query: 223 T 223
T
Sbjct: 973 T 973
Score = 50 (22.7 bits), Expect = 1.3e-65, Sum P(6) = 1.3e-65
Identities = 28/120 (23%), Positives = 52/120 (43%)
Query: 1023 SEIGSKLLFEECDVSIGQRVTGYVYKVD-NEWALLTIS-RHLKAQLFILDSAY-EPSELQ 1079
SE+ + + E+ + ++ + G V K + A L +S L + I+D + +P
Sbjct: 266 SEVAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGVSLTFLSSFTGIVDFMHVDP---- 321
Query: 1080 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDI 1137
E + + V +LS + K++RL LR G S +SND + + E +
Sbjct: 322 EKSTNYSPNQMVKACILSTHPTSKVVRLTLRQAFLHPGGSPN--QLSNDRIGAVVEESTV 379
Score = 49 (22.3 bits), Expect = 4.3e-83, Sum P(4) = 4.3e-83
Identities = 20/101 (19%), Positives = 42/101 (41%)
Query: 133 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 192
TG + +++ DV Q RS RK +D +K + ++ ++I
Sbjct: 25 TGKKAKPKFEQDNLFDVHHEEQTQKRKRSEGDHRKQKKFKADIKAPAKDIAISIEPLTIK 84
Query: 193 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
L GM+ ++ + +++S TG V + H+ + +
Sbjct: 85 ELCEGMLFLGCIKEVTVFELVISLPNGLTGFVPVTHISDAY 125
Score = 47 (21.6 bits), Expect = 1.7e-123, Sum P(3) = 1.7e-123
Identities = 23/86 (26%), Positives = 35/86 (40%)
Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
K DL + VQ K K F+ D K + L + + + +G +V G
Sbjct: 995 KANDLGVLLAVQDPAK----KNAFVR-----DRKESETALEETLAAAVKHSLSLGDIVTG 1045
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQ 1332
V SV+P V + K + S AS+
Sbjct: 1046 TVKSVKPTHVTVAIDDKLTGSIHASR 1071
Score = 47 (21.6 bits), Expect = 3.4e-65, Sum P(5) = 3.4e-65
Identities = 25/110 (22%), Positives = 40/110 (36%)
Query: 842 DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 901
DL + Q++N ++E VK V+ L + AS++ Q + L G V A V
Sbjct: 238 DLKIGQSLNCVIEEVKNEGRVVRLSADRSEVA-ASIAT-EQQNWTLSNLLPGLVVKAQVQ 295
Query: 902 ALPSSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKP 951
+ + G L L + Y +V+A I P
Sbjct: 296 KV---APLGVSLTFLSSFTGIVDFMHVDPEKSTNYSPNQMVKACILSTHP 342
Score = 45 (20.9 bits), Expect = 2.4e-49, Sum P(4) = 2.4e-49
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG---KKFKVGAELVF 426
DVK G +V+G V +V G + ++S + + K K G L
Sbjct: 1321 DVKKGQLVRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTA 1380
Query: 427 RVLGVKSK 434
+VL V K
Sbjct: 1381 KVLDVNKK 1388
Score = 44 (20.5 bits), Expect = 8.7e-122, Sum P(4) = 8.7e-122
Identities = 34/158 (21%), Positives = 59/158 (37%)
Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTG--FAPRSKAVDGQRADLSKTYYV-GQSVRSN 690
+ +V GYV ++ +G F L G Q+ L + Y G+ + +
Sbjct: 1322 VKKGQLVRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAK 1381
Query: 691 ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE----EKIAMLQSSKHNGSELKWV-E 745
+LDVN + + LSL + S + E L E+ + +K E+K +
Sbjct: 1382 VLDVNKKENHVELSLLPE--DTEMPSVLPESLGLPRCGAEEEKREEDNKEKKEEVKMKRK 1439
Query: 746 GFIIGSVIEGKVH---------ESNDFGVVVSFEEHSD 774
+ S E + + ND G+ V + E D
Sbjct: 1440 QRRVNSESEQETKPKKRKFSPADENDSGIEVYYREEED 1477
Score = 42 (19.8 bits), Expect = 1.6e-72, Sum P(3) = 1.6e-72
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 1226 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1285
+SS NSS L + HL+ E + + +K + CF KL+ V L N
Sbjct: 1583 LSSPNSSILW--LQYMAFHLQATEIEKARAVAERALKTI----CFREEQEKLNVWVALLN 1636
Query: 1286 LSDGY 1290
L + Y
Sbjct: 1637 LENMY 1641
Score = 42 (19.8 bits), Expect = 5.1e-62, Sum P(4) = 5.1e-62
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 414 PGKKFKVGAELVFRVLG---VKSKR-ITVTHKK-TLVKSKLAILSSYAEATDRLITHGWI 468
P K G ++ RV+G V + R + +TH T +L+I S E +
Sbjct: 1082 PTYTLKAGQKVTARVIGGRDVNTHRYLPITHPHFTRSVPELSIRPSEIEGEVETMRDDTR 1141
Query: 469 TKIEKHG------CFVRFYNGVQGF 487
K+ + CFVR YN ++ +
Sbjct: 1142 EKLGPYNTGQTVTCFVRKYNTLKNW 1166
Score = 41 (19.5 bits), Expect = 5.1e-63, Sum P(5) = 5.1e-63
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 936 YDVGSLVQAEITEIKPLELRL 956
Y+VG V+ + E P E +L
Sbjct: 503 YNVGDEVRCRVLECNPAEKKL 523
Score = 40 (19.1 bits), Expect = 9.3e-123, Sum P(3) = 9.3e-123
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
GEK K +L VD ++ + ++ K A
Sbjct: 899 GEKAKGLVLHVDAITSKVYVSLREELLKKRA 929
Score = 40 (19.1 bits), Expect = 2.9e-58, Sum P(5) = 2.9e-58
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 1225 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV--TSK 1267
G+S T S + VD EK + SPN +V+ + + TSK
Sbjct: 301 GVSLTFLSSFTGIVDFMHVDPEKSTNYSPNQMVKACILSTHPTSK 345
Score = 38 (18.4 bits), Expect = 5.1e-63, Sum P(5) = 5.1e-63
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 1035 DVSIGQRVTGYVYKVDNEWALLTIS 1059
D+ IGQ + + +V NE ++ +S
Sbjct: 238 DLKIGQSLNCVIEEVKNEGRVVRLS 262
Score = 37 (18.1 bits), Expect = 2.1e-126, Sum P(4) = 2.1e-126
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1103
+L+ E SE +E + K T + K+KK
Sbjct: 1519 VLNQKEESSESEEEEENLQSKKKQTKKEKELEKQKK 1554
Score = 37 (18.1 bits), Expect = 3.4e-65, Sum P(5) = 3.4e-65
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 750 GSVIEGKVHESNDFGVVVSFEEHSDVYGFI--THHQLAGATVESGSVIQAAILD 801
G + G + E F +V+S + + GF+ TH A + + S V Q +L+
Sbjct: 89 GMLFLGCIKEVTVFELVISLP--NGLTGFVPVTHISDAYSELLSKQVTQGELLE 140
Score = 37 (18.1 bits), Expect = 2.7e-62, Sum P(5) = 2.7e-62
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 1013 LSIKPSMLTVSEIGSKLLFEEC 1034
+SI+P LT+ E+ +LF C
Sbjct: 76 ISIEP--LTIKELCEGMLFLGC 95
>ZFIN|ZDB-GENE-030131-4076 [details] [associations]
symbol:pdcd11 "programmed cell death 11"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 ZFIN:ZDB-GENE-030131-4076 GO:GO:0003723 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HOGENOM:HOG000088607 HOVERGEN:HBG108419 OMA:LHLADIY
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 EMBL:CR812943
IPI:IPI00817258 UniGene:Dr.76104 Ensembl:ENSDART00000074342
Ensembl:ENSDART00000124833 Uniprot:B8JIP9
Length = 1816
Score = 646 (232.5 bits), Expect = 7.7e-127, Sum P(4) = 7.7e-127
Identities = 198/839 (23%), Positives = 395/839 (47%)
Query: 1 MYPQNISAGMKLWGVVAEVNEKDLVICXXXXXXXXX---XXXXXXXXILDNEIEANE--D 55
++ ++++ G + G V EV++ ++V+ IL+++++ ++ +
Sbjct: 73 LHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAYTNILNDKLDTDDGLE 132
Query: 56 NLLPT--IFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTA 113
++P +F +G L+ C+V LD K+ G + ++ M L+
Sbjct: 133 EVVPLSKLFTLGMLIRCVVSSLDSAKE--GHISLKLSINPKDVNKALNSVALKPAMTLSG 190
Query: 114 YVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 173
V+S+EDHGY++ G+ FLP+ + + + V +L+ ++ + + +VV LS
Sbjct: 191 CVESVEDHGYLVDIGIGGTKAFLPKKSTSSKQDLYVGQYVLV--LIEDVKDSGRVVRLSQ 248
Query: 174 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
+P + K + +G ++D L+PG+++ V+ + +G++++FL+ FTG VD HL
Sbjct: 249 NPQALVKACAQTKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLSSFTGVVDFLHLDEDK 308
Query: 234 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRAPPSHV--KVGDIYDQS 289
+T Y++ +++ ARIL+V P++R VGL+L +LL H +VG++
Sbjct: 309 EST-----YSKGQEILARILYVQPSTRQVGLSLRSHLLPPGGAVLDLHFSERVGEVVQGC 363
Query: 290 KXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV-RILGFRHL 348
+ + + A+V ++ +E +L+ + + RI+ + +
Sbjct: 364 QMTSLHHYSGALMKMLD---GSRAFVH-RNLLKEPKEELDTNHLMSQTQHILRIINYSPI 419
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
E + L+ S+ E F+ D+K G +V+G V + G V+ ++ + P H+++
Sbjct: 420 EQIYQATLRWSSIETPFFSCQDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLAD 479
Query: 409 FEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
+ P KKF G ++ RVL V++++ + +T KK LV+S L I SY++A I+HG
Sbjct: 480 VTLKNPEKKFYPGLKVKCRVLLVEAQKKLLILTRKKALVESTLPIFQSYSDARPGRISHG 539
Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
++ I++ GC VRFY V+G P EL + P ++ VGQVVK +++ + +
Sbjct: 540 FVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEKKMLR 599
Query: 527 LSFM-MKPTRVSEDXXXXXXXXXXXXXXXXX---XXXXXXXXIAKGYSKGTIPTEHLADH 582
LSF + V E+ I + +PT HL+DH
Sbjct: 600 LSFKSVTEEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEVSIIPEEVQAFLPTTHLSDH 659
Query: 583 LEHATVMKSVIKPGYEFDQLLVLDN-ESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSV 639
+ + + ++ G L+ L N + ++L+ K L + +P + S +
Sbjct: 660 VTNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLKAYIEDGAIPKNFSELQVGMQ 719
Query: 640 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
+ G+V NI+ G F+ F + G AP + D + S + + Q+V + + +++ E
Sbjct: 720 MVGWVKNIMPYGVFISFPYGVFGLAPIANMGDQFIKETSGIFDIDQTVVAKVTNLDEEKQ 779
Query: 700 RITLSLKQSCCSSTDASFMQEHFL-LEEKIAMLQSSKHNG-SELKW-VEGFIIGSVIEGK 756
R +SLK S S ++ F L+E+ + + G S++ W + +G ++
Sbjct: 780 RFLVSLKLSELSLSENEFHTRLIQGLKERRNISEMRAGRGDSDVLWKLSALTVGDQMKMI 839
Query: 757 VHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
V ++ + G V+++ ++ S V + + G + G + A IL + + V +SL+
Sbjct: 840 VGDTTEDGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKLNAVILHIDFVKSQVHVSLR 898
Score = 577 (208.2 bits), Expect = 7.7e-127, Sum P(4) = 7.7e-127
Identities = 117/265 (44%), Positives = 168/265 (63%)
Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
P FERL+ SSP+SS +W++YMAF L +E+AR++AERAL+TI+ REE EKLNIW
Sbjct: 1547 PDNSTAFERLLLSSPDSSLLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEKLNIW 1606
Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
VA NLEN YG P +++ KVF+RA+QYC+P V+ L +Y ++E+ K A+ L M+K
Sbjct: 1607 VAMLNLENMYGTP--DSLQKVFERAIQYCEPLLVYQQLADIYAKSEKIKEAESLYKSMVK 1664
Query: 1664 KFKHSCKVWXXXXXXXXXXX-XEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
+F+ V+ + A++QRAL SL +H+ I++ A LEF+ G +++
Sbjct: 1665 RFRQDKAVYLSYGTFLLRQRQSDAANALLQRALQSLSSKEHVDLIARFARLEFQFGNSEK 1724
Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXYL 1782
+SMF+ +L+ YPKRTDLWS+++D ++ G +R LF+R I YL
Sbjct: 1725 AKSMFDKVLTTYPKRTDLWSVFIDLMVKHGSQKEVRELFDRVIHLSVSVKKIKFFFKRYL 1784
Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
EYEK G E I+ VKQKA+EYVES
Sbjct: 1785 EYEKKNGTPETIQVVKQKALEYVES 1809
Score = 175 (66.7 bits), Expect = 3.6e-65, Sum P(3) = 3.6e-65
Identities = 49/180 (27%), Positives = 91/180 (50%)
Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
+ ++TP +D+ IV+G V ++ G ++ + + + +L+D +++PE
Sbjct: 430 SSIETP---FFSCQDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPE 486
Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1355
K+F G V RVL VE K + +T K + + + S+ G I G + ++
Sbjct: 487 KKFYPGLKVKCRVLLVEAQKKLLILTRKKALVESTLPI-FQSYSDARPGRISHGFVVCIK 545
Query: 1356 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
+G + ++ GL + EL+ + V N E ++ G+ VKVK+LK D+EK+ + L KS
Sbjct: 546 EFGCIVRFYE-DVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEKKMLRLSFKS 604
Score = 157 (60.3 bits), Expect = 7.7e-127, Sum P(4) = 7.7e-127
Identities = 45/143 (31%), Positives = 76/143 (53%)
Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
PL Y EGQ ++C V+E + ++ F+V SLR S + + D+ V+ P ++
Sbjct: 1225 PLESYKEGQIIRCHVIE--QKIK-EFNV--SLRPS---RLNKDKHDI---VEDP--EIQS 1271
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLV 1304
I D+ ++GYV +V +G F+ LSR + +VL N + Y+ P+ K LV
Sbjct: 1272 IADIKEGQSIRGYVSSVNDQGIFLRLSRTITGRVLFQNATKYYMNDPKVLIKHVGQNALV 1331
Query: 1305 AGRVLSVEPLSKRVEVTLKTSDS 1327
A +VLSV+ + V ++L + D+
Sbjct: 1332 AAKVLSVDSENLHVNLSLLSKDT 1354
Score = 133 (51.9 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
Identities = 74/325 (22%), Positives = 140/325 (43%)
Query: 1097 SINKEKKLLRLVLRPF--QDGISDKTVDISNDNMQTFIHEGDI-VGGRISKILSGVGGLV 1153
++ K+KK ++ P + + ++ + ++ +H D+ VG + + V
Sbjct: 36 AVKKKKKAVKQDEAPKSKKQKVDEENIKLNTTTTVQILHLRDLTVGTLMLGCVKEVSDFE 95
Query: 1154 VQIG-PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1212
V +G P G V + + NIC D + + D G +E + K+ + +R
Sbjct: 96 VVVGLPS--GLVGYLPICNIC--DAYTNILNDKLDTDDGLEEVVPLS-KLFTLGMLIRC- 149
Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
V SL S+ +G S S DV+ K L + L P M + G V++V G +
Sbjct: 150 --VVSSLDSAKEGHISLKLSINPKDVN---KALNSVA-LKPAMTLSGCVESVEDHGYLVD 203
Query: 1273 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS-RTAS 1331
+ K L S S +++ +G+ V + V+ + V ++ + +
Sbjct: 204 IGIG-GTKAFLPKKST----SSKQDLYVGQYVLVLIEDVKDSGRVVRLSQNPQALVKACA 258
Query: 1332 QSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1390
Q++ L NL G ++ G +KRV +GL +T ++ G+ L ED E+ Y
Sbjct: 259 QTKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLSS-FTGVVDFLHLDEDK----ESTYS 313
Query: 1391 AGEKVKVKILKVDKEKRRISLGMKS 1415
G+++ +IL V R++ L ++S
Sbjct: 314 KGQEILARILYVQPSTRQVGLSLRS 338
Score = 122 (48.0 bits), Expect = 8.2e-120, Sum P(4) = 8.2e-120
Identities = 40/174 (22%), Positives = 80/174 (45%)
Query: 1251 LSPNMIVQGYVKNVTS-KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
L P M V+ + KG + L + L++LSD Y E P + + G+++ V
Sbjct: 1181 LEPGMNTLAMVQKIQPHKGLMLALPYENTGLAHLTDLSDSYTEKPLESYKEGQIIRCHV- 1239
Query: 1310 SVEPLSKRVEVTLKTS----DSRTASQS-EINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
+E K V+L+ S D + EI +++++ G + G + V G+F+ +
Sbjct: 1240 -IEQKIKEFNVSLRPSRLNKDKHDIVEDPEIQSIADIKEGQSIRGYVSSVNDQGIFLRLS 1298
Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYR-AGEK--VKVKILKVDKEKRRISLGMKS 1415
T + G ++ ++++ + + + G+ V K+L VD E ++L + S
Sbjct: 1299 RT-ITGRVLFQNATKYYMNDPKVLIKHVGQNALVAAKVLSVDSENLHVNLSLLS 1351
Score = 114 (45.2 bits), Expect = 2.2e-60, Sum P(4) = 2.2e-60
Identities = 35/149 (23%), Positives = 66/149 (44%)
Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
+ D P I G+V + GC + + V + L+ V +PE+ F +G++V
Sbjct: 526 QSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVK 585
Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
+VL + K + ++ K+ + +I + VG +V ++ R GL ++I
Sbjct: 586 VKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKFDFI-VGKMVDARVCRKVLNGLEVSIIP 644
Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEK 1394
+ + LS DHV N ++ A E+
Sbjct: 645 EEVQAFLPTTHLS-DHVTNCLPLWMALEE 672
Score = 106 (42.4 bits), Expect = 5.3e-61, Sum P(4) = 5.3e-61
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
N S L VG ++G +K + YG+FI+ + GL ++ + + + I+ + V
Sbjct: 710 NFSELQVGMQMVGWVKNIMPYGVFISFPY-GVFGLAPIANMGDQFIKETSGIFDIDQTVV 768
Query: 1397 VKILKVDKEKRRISLGMKSS 1416
K+ +D+EK+R + +K S
Sbjct: 769 AKVTNLDEEKQRFLVSLKLS 788
Score = 99 (39.9 bits), Expect = 3.9e-54, Sum P(4) = 3.9e-54
Identities = 98/450 (21%), Positives = 173/450 (38%)
Query: 330 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP-----GMVVKGKVIAV 384
KK+ GSC+ V++ + E LA G S ++ H KP G ++K V +
Sbjct: 952 KKFSVGSCLDVKV-DDPNCEDLA-GFPLIS-YQSSNAKHEQHKPNEERLGELMKVTVKKL 1008
Query: 385 DSFGAIVQFPGGVKALCPLPHMSEFEIVK--PGKKFKVGAELVFRVLGVKSKR----ITV 438
+ +V P G + + EF + P KVG E+ RV+G ++ R + +
Sbjct: 1009 KALCVLVNLPSGNTGRVHVSQILEFPDIGSCPTSVLKVGMEMEARVIGGRAVRAHNFLAI 1068
Query: 439 TH--------KKTLVKSKLAI------LSSYAEATDRL-ITHGWITKIEKHGCFVR--FY 481
+H + + ++SKL + L Y D + +I K + V+
Sbjct: 1069 SHPDYNISIPELSFLESKLKVSDMVNKLEKYKPGDDIICFPSKYIKKEQLLEVHVKPDIM 1128
Query: 482 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXX 541
V A ++LGL P ++ GQ + +++S P + I S + T E
Sbjct: 1129 GAVPLLAMCNKLGLSK--HPQRLFKPGQALSAKVVSVDP-KKPIQFSLSLTGTHKLEPGM 1185
Query: 542 XXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
+A Y + HL D L + K + Y+ Q
Sbjct: 1186 NTLAMVQKIQPHKGLM-------LALPYENTGLA--HLTD-LSDSYTEKPL--ESYKEGQ 1233
Query: 602 LL---VLDNESSNLLLSAKYSLINSAQQ-LPSDA-----SHIHPNSVVHGYVCNIIETGC 652
++ V++ + +S + S +N + + D + I + GYV ++ + G
Sbjct: 1234 IIRCHVIEQKIKEFNVSLRPSRLNKDKHDIVEDPEIQSIADIKEGQSIRGYVSSVNDQGI 1293
Query: 653 FVRFLGRLTG---FAPRSKAVDGQRADLSKTYYVGQS--VRSNILDVNSETGRITLSLKQ 707
F+R +TG F +K L K +VGQ+ V + +L V+SE + LSL
Sbjct: 1294 FLRLSRTITGRVLFQNATKYYMNDPKVLIK--HVGQNALVAAKVLSVDSENLHVNLSLLS 1351
Query: 708 SCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
D + E L ++ + KH+
Sbjct: 1352 KDTGKPD--LLPESLELPLRLTGEEKEKHD 1379
Score = 97 (39.2 bits), Expect = 5.3e-57, Sum P(3) = 5.3e-57
Identities = 27/110 (24%), Positives = 57/110 (51%)
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
R+++ P+ + + TL+ S T S ++ VG IV G + ++ +G+++ I
Sbjct: 412 RIINYSPIEQIYQATLRWSSIETPFFS----CQDIKVGQIVEGTVTDLQKHGVYVRI-GE 466
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
++ G+ L++ + N E + G KVK ++L V+ +K+ + L K +
Sbjct: 467 HIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLLVEAQKKLLILTRKKA 516
Score = 95 (38.5 bits), Expect = 5.6e-117, Sum P(4) = 5.6e-117
Identities = 43/182 (23%), Positives = 82/182 (45%)
Query: 944 AEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 1002
A + +I+P + L L G H+T+++D + E ++K GQ + +I + K
Sbjct: 1189 AMVQKIQPHKGLMLALPYENTGLAHLTDLSD---SYTEKPLESYKEGQIIRCHVIEQKIK 1245
Query: 1003 PDMKKSFLWELSIKPSMLTVSE---IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1059
+ +S++PS L + + + D+ GQ + GYV V+++ L +S
Sbjct: 1246 E-------FNVSLRPSRLNKDKHDIVEDPEIQSIADIKEGQSIRGYVSSVNDQGIFLRLS 1298
Query: 1060 RHLKAQ-LFILDSAYEPSELQEFQRRFHIGK--AVTGHVLSINKEKKLLRLVLRPFQDGI 1116
R + + LF + Y ++ + + H+G+ V VLS++ E + L L G
Sbjct: 1299 RTITGRVLFQNATKYYMNDPKVLIK--HVGQNALVAAKVLSVDSENLHVNLSLLSKDTGK 1356
Query: 1117 SD 1118
D
Sbjct: 1357 PD 1358
Score = 89 (36.4 bits), Expect = 2.4e-116, Sum P(4) = 2.4e-116
Identities = 26/138 (18%), Positives = 70/138 (50%)
Query: 1289 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1348
G + P++ F G+ ++ +V+SV+P K ++ +L S T + L G +
Sbjct: 1141 GLSKHPQRLFKPGQALSAKVVSVDP-KKPIQFSL----SLTGTHK-------LEPGMNTL 1188
Query: 1349 GQIKRVESY-GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
+++++ + GL + + N GL H+++LS+ + + Y+ G+ ++ + ++++ +
Sbjct: 1189 AMVQKIQPHKGLMLALPYEN-TGLAHLTDLSDSYTEKPLESYKEGQIIRCHV--IEQKIK 1245
Query: 1408 RISLGMKSSYFKNDADNL 1425
++ ++ S D ++
Sbjct: 1246 EFNVSLRPSRLNKDKHDI 1263
Score = 87 (35.7 bits), Expect = 5.0e-59, Sum P(4) = 5.0e-59
Identities = 26/112 (23%), Positives = 53/112 (47%)
Query: 1225 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1284
G+ T L ++ G + +L M + G+VKN+ G FI + ++
Sbjct: 689 GIVLTKKPHLKAYIED-GAIPKNFSELQVGMQMVGWVKNIMPYGVFISFPYGVFGLAPIA 747
Query: 1285 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1336
N+ D +++ F I + V +V +++ +R V+LK S+ + S++E +
Sbjct: 748 NMGDQFIKETSGIFDIDQTVVAKVTNLDEEKQRFLVSLKLSEL-SLSENEFH 798
Score = 79 (32.9 bits), Expect = 2.6e-66, Sum P(4) = 2.6e-66
Identities = 40/159 (25%), Positives = 68/159 (42%)
Query: 1031 FEEC-DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1089
F C D+ +GQ V G V + + I H++ + + A L+ +++F+ G
Sbjct: 436 FFSCQDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLA--DVTLKNPEKKFYPGL 493
Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK---IL 1146
V VL + +KKLL L + + + T+ I Q++ D GRIS +
Sbjct: 494 KVKCRVLLVEAQKKLLILTRKK---ALVESTLPI----FQSY---SDARPGRISHGFVVC 543
Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
G +V+ + G V EL V++P + GQ
Sbjct: 544 IKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQ 582
Score = 76 (31.8 bits), Expect = 2.2e-74, Sum P(4) = 2.2e-74
Identities = 19/86 (22%), Positives = 43/86 (50%)
Query: 1550 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1609
F++++ + P + +W ++ M+ ++ R + +R + +++ + K + Y
Sbjct: 1729 FDKVLTTYPKRTDLWSVFIDLMVKHGSQKEVRELFDRVIH-LSVSVKKIKF-FFKRYLEY 1786
Query: 1610 ENEYGNPPEEAVVKVFQRALQYCDPK 1635
E + G P VVK Q+AL+Y + K
Sbjct: 1787 EKKNGTPETIQVVK--QKALEYVESK 1810
Score = 76 (31.8 bits), Expect = 5.4e-66, Sum P(4) = 5.4e-66
Identities = 48/221 (21%), Positives = 96/221 (43%)
Query: 938 VGSLVQAEITEIKPLELRLKFGIGFHG---RIHITEVNDDKSNVVENLFSNFKIGQTVTA 994
VG +V+ +T+++ + ++ G G RIH+ +V ++N F G V
Sbjct: 444 VGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVT------LKNPEKKFYPGLKVKC 497
Query: 995 RIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1054
R++ + KK + L+ K +++ E + D G+ G+V +
Sbjct: 498 RVLLVEAQ---KKLLI--LTRKKALV---ESTLPIFQSYSDARPGRISHGFVVCIKEFGC 549
Query: 1055 LLTISRHLKA----QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1110
++ +K Q ++ P EL F +G+ V VL ++EKK+LRL +
Sbjct: 550 IVRFYEDVKGLVPMQELTTETVTNPEEL------FFVGQVVKVKVLKCDEEKKMLRLSFK 603
Query: 1111 PFQDGISDKTVDISNDNMQTF-IHEGDIVGGRIS-KILSGV 1149
++++ D+ + + F G +V R+ K+L+G+
Sbjct: 604 ----SVTEE--DVREEQIAKFDFIVGKMVDARVCRKVLNGL 638
Score = 75 (31.5 bits), Expect = 7.7e-127, Sum P(4) = 7.7e-127
Identities = 57/270 (21%), Positives = 114/270 (42%)
Query: 938 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
+G L++ + ++K L + + G GR+H++++ + ++ S K+G + AR+I
Sbjct: 997 LGELMKVTVKKLKALCVLVNLPSGNTGRVHVSQILEFP-DIGSCPTSVLKVGMEMEARVI 1055
Query: 998 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV-YKVDNEWALL 1056
+ +FL +S +++ E+ F E + + V YK ++ +
Sbjct: 1056 G--GRAVRAHNFL-AISHPDYNISIPELS----FLESKLKVSDMVNKLEKYKPGDD-IIC 1107
Query: 1057 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1116
S+++K + +L+ +P + K L ++K + L +P Q +
Sbjct: 1108 FPSKYIKKEQ-LLEVHVKPDIMGAVPLLAMCNK------LGLSKHPQRL---FKPGQ-AL 1156
Query: 1117 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL--VVQIGPHLYGRVHFTELKNICV 1174
S K V + D + + G K+ G+ L V +I PH G + +N +
Sbjct: 1157 SAKVVSV--DPKKPIQFSLSLTGTH--KLEPGMNTLAMVQKIQPHK-GLMLALPYENTGL 1211
Query: 1175 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1204
+ D PL Y EGQ ++C V+E
Sbjct: 1212 AHLTDLSDSYTEKPLESYKEGQIIRCHVIE 1241
Score = 67 (28.6 bits), Expect = 2.6e-66, Sum P(4) = 2.6e-66
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 743 W-VEGFIIGSVIEGKVHESNDFGVVVSF-EEHSDVYGFITHHQLAGATVESGSVIQAAIL 800
W ++ + G +I G V G++V+F + V F+ + +T G I A IL
Sbjct: 264 WTLDNLLPGLLIHGCVKRVTPHGLIVTFLSSFTGVVDFLHLDEDKESTYSKGQEILARIL 323
Query: 801 DVAKAERLVDLSLKT 815
V + R V LSL++
Sbjct: 324 YVQPSTRQVGLSLRS 338
Score = 66 (28.3 bits), Expect = 1.8e-114, Sum P(4) = 1.8e-114
Identities = 38/162 (23%), Positives = 63/162 (38%)
Query: 1088 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKI 1145
G+ + HV I ++ K + LRP + DK + + +Q+ I EG + G +S +
Sbjct: 1232 GQIIRCHV--IEQKIKEFNVSLRPSRLN-KDKHDIVEDPEIQSIADIKEGQSIRGYVSSV 1288
Query: 1146 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
G+ +++ + GRV F ++DP + + V KVL +
Sbjct: 1289 NDQ--GIFLRLSRTITGRVLFQNATKYYMNDPKV--------LIKHVGQNALVAAKVLSV 1338
Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
HV LSL S G L + G+ EK
Sbjct: 1339 DSE---NLHVNLSLLSKDTGKPDLLPESLELPLRLTGEEKEK 1377
Score = 65 (27.9 bits), Expect = 7.5e-65, Sum P(4) = 7.5e-65
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 1092 TGHVLSINKEKKLLRLV-LRPFQDGISDKTVDISNDNMQTF----IHEGDIVGGRISKIL 1146
T H++S + + +LR++ P + I T+ S+ F I G IV G ++ +
Sbjct: 400 TNHLMS--QTQHILRIINYSPIEQ-IYQATLRWSSIETPFFSCQDIKVGQIVEGTVTDLQ 456
Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
G+ V+IG H+ G + L ++ + +P E +F P G VKC+VL
Sbjct: 457 KH--GVYVRIGEHIRGMIPRIHLADVTLKNP-----EKKFYP------GLKVKCRVL 500
Score = 64 (27.6 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 46/177 (25%), Positives = 79/177 (44%)
Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGIDVKP-GLLLQG-VVRS 161
++ GM A V+ I+ H ++ LP TG +L+++ KP +G ++R
Sbjct: 1181 LEPGMNTLAMVQKIQPHKGLM-LALPYENTGLAHLTDLSDS--YTEKPLESYKEGQIIRC 1237
Query: 162 --IDRTRKVVYLSSDPDTVSKC---VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 216
I++ K +S P ++K + +D + SI + G + V S+ + G+ L
Sbjct: 1238 HVIEQKIKEFNVSLRPSRLNKDKHDIVEDPEIQSIADIKEGQSIRGYVSSVNDQGIFLRL 1297
Query: 217 LTYFTGTVDIFHLQNTFPTTNWKND-------YNQHKKVNARILFVDPTSRAVGLTL 266
TG V +F QN T + ND Q+ V A++L VD + V L+L
Sbjct: 1298 SRTITGRV-LF--QNA--TKYYMNDPKVLIKHVGQNALVAAKVLSVDSENLHVNLSL 1349
Score = 63 (27.2 bits), Expect = 5.0e-73, Sum P(4) = 5.0e-73
Identities = 19/85 (22%), Positives = 35/85 (41%)
Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXX--XYLEY 1784
FE +L P + LW Y+ ++ ++ R + ERA+ L
Sbjct: 1553 FERLLLSSPDSSLLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEKLNIWVAMLNL 1612
Query: 1785 EKSVGEEERIEYVKQKAMEYVESTL 1809
E G + ++ V ++A++Y E L
Sbjct: 1613 ENMYGTPDSLQKVFERAIQYCEPLL 1637
Score = 60 (26.2 bits), Expect = 4.3e-50, Sum P(4) = 4.3e-50
Identities = 28/141 (19%), Positives = 60/141 (42%)
Query: 308 PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE---GLATGILKASAFEGL 364
P ++D+++ K + YKEG +R ++ + E L L + +
Sbjct: 1205 PYENTGLAHLTDLSDSYTEKPLESYKEGQIIRCHVIEQKIKEFNVSLRPSRLNKDKHDIV 1264
Query: 365 ----VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK- 419
+ + +D+K G ++G V +V+ G ++ + + +++ + P K
Sbjct: 1265 EDPEIQSIADIKEGQSIRGYVSSVNDQGIFLRLSRTITGRVLFQNATKYYMNDPKVLIKH 1324
Query: 420 VG--AELVFRVLGVKSKRITV 438
VG A + +VL V S+ + V
Sbjct: 1325 VGQNALVAAKVLSVDSENLHV 1345
Score = 49 (22.3 bits), Expect = 5.1e-64, Sum P(4) = 5.1e-64
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 146 GIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 175
G+++ PG L V+ ID + V++S P
Sbjct: 870 GVNLTPGCKLNAVILHIDFVKSQVHVSLRP 899
Score = 48 (22.0 bits), Expect = 5.2e-124, Sum P(4) = 5.2e-124
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 848 TVNAIVEIVKENYLVLSLPEYNHSIGYAS-VSDYNTQKFPQKQFLNGQSV 896
T+ + +I L+L+LP N + + + +SD T+K P + + GQ +
Sbjct: 1187 TLAMVQKIQPHKGLMLALPYENTGLAHLTDLSDSYTEK-PLESYKEGQII 1235
Score = 48 (22.0 bits), Expect = 2.5e-64, Sum P(4) = 2.5e-64
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 939 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
G L+ + + P L + F F G + +++DK E+ +S GQ + ARI+
Sbjct: 272 GLLIHGCVKRVTPHGLIVTFLSSFTGVVDFLHLDEDK----ESTYSK---GQEILARIL 323
Score = 43 (20.2 bits), Expect = 1.7e-123, Sum P(4) = 1.7e-123
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 859 NYLVLSLPEYNHSI 872
N+L +S P+YN SI
Sbjct: 1064 NFLAISHPDYNISI 1077
Score = 43 (20.2 bits), Expect = 1.5e-62, Sum P(4) = 1.5e-62
Identities = 52/287 (18%), Positives = 114/287 (39%)
Query: 868 YNHSIGYASVSDYNTQKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXX 925
Y G + + T+ P++ F GQ + V L L L K++
Sbjct: 554 YEDVKGLVPMQELTTETVTNPEELFFVGQ--VVKVKVLKCDEEKKMLRLSFKSVTEEDVR 611
Query: 926 XXXXXXXXXXYDVGSLVQAEITE--IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 983
+ VG +V A + + LE+ + + T ++D +N + L+
Sbjct: 612 EEQIAKFD--FIVGKMVDARVCRKVLNGLEVSI-IPEEVQAFLPTTHLSDHVTNCLP-LW 667
Query: 984 SNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVT 1043
+ G T+ ++ +N KK + L+ KP + E G+ + ++ +G ++
Sbjct: 668 MALEEGDTI-CNLMCLTNYK--KKGIV--LTKKPHLKAYIEDGA-IPKNFSELQVGMQMV 721
Query: 1044 GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1103
G+V + ++ + I + + ++E F I + V V ++++EK+
Sbjct: 722 GWVKNIMPYGVFISFPYGVFGLAPIANMGDQ--FIKETSGIFDIDQTVVAKVTNLDEEKQ 779
Query: 1104 LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
+ L+ +S+ + +S + T + +G IS++ +G G
Sbjct: 780 RFLVSLK-----LSE--LSLSENEFHTRLIQGLKERRNISEMRAGRG 819
Score = 41 (19.5 bits), Expect = 1.3e-63, Sum P(4) = 1.3e-63
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 938 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 981
VG+L+ + E+ E+ + G G + I + D +N++ +
Sbjct: 80 VGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAYTNILND 123
Score = 40 (19.1 bits), Expect = 3.6e-123, Sum P(4) = 3.6e-123
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 855 IVKENYLVLSL-PEYNHSIGY-ASVSDYNTQKFPQKQFLNGQSVIATVMAL 903
I KE L + + P+ ++ A + K PQ+ F GQ++ A V+++
Sbjct: 1113 IKKEQLLEVHVKPDIMGAVPLLAMCNKLGLSKHPQRLFKPGQALSAKVVSV 1163
Score = 39 (18.8 bits), Expect = 2.1e-63, Sum P(4) = 2.1e-63
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 979 VENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1038
V+NLF + + + P KK + E +IK + T +I D+++
Sbjct: 26 VDNLFDTPAKAVKKKKKAVKQDEAPKSKKQKVDEENIKLNTTTTVQI-----LHLRDLTV 80
Query: 1039 GQRVTGYVYKVDN 1051
G + G V +V +
Sbjct: 81 GTLMLGCVKEVSD 93
Score = 39 (18.8 bits), Expect = 6.5e-48, Sum P(3) = 6.5e-48
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 5 NISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILDNEIEANEDNLLPTIFHV 64
+I G + G V+ VN++ + + + N+ +L I HV
Sbjct: 1274 DIKEGQSIRGYVSSVNDQGIFLRLSRTITGRVLFQNATKYYM------NDPKVL--IKHV 1325
Query: 65 GQ--LVSCIVLQLDDDKKEI 82
GQ LV+ VL +D + +
Sbjct: 1326 GQNALVAAKVLSVDSENLHV 1345
Score = 38 (18.4 bits), Expect = 1.6e-111, Sum P(4) = 1.6e-111
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 1016 KPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
K S S+ G ++ F E D ++ + +G V
Sbjct: 1434 KKSKKEDSDSGVEVFFRETDETVSDKKSGKV 1464
>CGD|CAL0005606 [details] [associations]
symbol:orf19.1578 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0032040 "small-subunit
processome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386
CGD:CAL0005606 GO:GO:0003723 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:AACQ01000008 EMBL:AACQ01000007 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 KO:K14792
RefSeq:XP_722479.1 RefSeq:XP_722620.1 ProteinModelPortal:Q5ALK0
STRING:Q5ALK0 GeneID:3635820 GeneID:3635933 KEGG:cal:CaO19.1578
KEGG:cal:CaO19.9151 Uniprot:Q5ALK0
Length = 1722
Score = 835 (299.0 bits), Expect = 2.5e-124, Sum P(2) = 2.5e-124
Identities = 209/680 (30%), Positives = 348/680 (51%)
Query: 1153 VVQIGP-HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
+++I P H+ + + + V+D L+ Y + + D + ++ +V KVL+I T +
Sbjct: 1067 IIKIKPNHVLVELGNNVIASSFVTDALNDYSD-KLDHV--FNVNDYVSAKVLDIDSTNK- 1122
Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
+ +SLR+ G SD K + I DL+ +++G+VKN+++ G ++
Sbjct: 1123 --RISVSLRTDKAG------SD---------KVINSISDLTRGQVIKGFVKNISNNGVYV 1165
Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
L R + A V +S+LSD Y++ + F + V G++++ + R+ +TLK S+
Sbjct: 1166 SLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKIVNCKQ-EGRILMTLKESEVN-GE 1223
Query: 1332 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYR 1390
+ +L +GDI G + +G+F+ ++ T N+ GLCH SE+SE+ VDN+++++
Sbjct: 1224 LKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGTVNVSGLCHHSEISENDVDNVKSLFG 1283
Query: 1391 AGEKVKVKILKVDKEKRRISLGMKSSYF-------KNDADNLQMXXXXXXXXXXXXXXXY 1443
G++VKVKILK+D EKR++SLGMK+SYF ND ++++M +
Sbjct: 1284 TGDRVKVKILKIDSEKRQLSLGMKASYFITDSGKEDNDDEDVEMEDASEVGEEEEEGEDH 1343
Query: 1444 NRSSLLENSSVAVQD----MDMESED-GGSLVLAQIESRASVPPLEVNLDDEQPDMDNGI 1498
S E D MD++ D S Q + L L D I
Sbjct: 1344 EESESEEEKEEEDDDDDDIMDVDDNDENDSEDEEQSADESQEKSLSTGLSTNGFDWTASI 1403
Query: 1499 SQNQGHTDEAKTIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAPRTPDEFERLVRSSP 1558
+Q DE + D AP++ +FERL+ +P
Sbjct: 1404 L-DQADEDEESSDDDTDFTESSKKKSKKKSKSAVEDKTGDLNTRAPQSTADFERLLIGNP 1462
Query: 1559 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1618
NSS +W+ YM+F L +++V+KAR I ERAL+TIN REE EKLNIW+A NLEN +G +
Sbjct: 1463 NSSILWMNYMSFQLQLSEVDKAREIGERALKTINYREEQEKLNIWIALLNLENTFGT--D 1520
Query: 1619 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWXXXXXX 1678
E++ F++++QY D +H L+ +Y+ +E+ A +L +M KKF W
Sbjct: 1521 ESLEDTFKKSIQYMDSFTMHEKLVNIYKMSEKFDQAKQLFNRMTKKFGKVLNTWVLYGSF 1580
Query: 1679 XXXXXXEG-VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1737
+ + ++ +AL LP+ +HI+ + + A LEF+ G ++GRS+FEG++++ PKR
Sbjct: 1581 LLDQNSQDEMHEILAKALNILPKREHIELVKKFAQLEFQKGDPEQGRSLFEGLVADAPKR 1640
Query: 1738 TDLWSIYLDQEIRLG-------DVDL---IRGLFERAIXXXXXXXXXXXXXXXYLEYEKS 1787
DLW++Y+DQEI+ D D+ + LFER + +L YE+
Sbjct: 1641 IDLWNVYIDQEIKQDNKTSDEDDTDIKSKVEDLFERVLSKKITRKQAKFFFNKWLNYEED 1700
Query: 1788 VGEEERIEYVKQKAMEYVES 1807
+E I VK KA EYV++
Sbjct: 1701 KQDENMIARVKSKAAEYVQN 1720
Score = 482 (174.7 bits), Expect = 2.5e-124, Sum P(2) = 2.5e-124
Identities = 187/772 (24%), Positives = 325/772 (42%)
Query: 61 IFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIED 120
IF +G + + +D K K++I + + +L VKSIED
Sbjct: 180 IFKLGSWLKAKITTSHEDYKN--KKRIELTIEPESVNENLEVDDLIVNNILQCSVKSIED 237
Query: 121 HGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSDPDT 177
HG IL G ++GF+ L N+ IDV PGL++ + S R + L T
Sbjct: 238 HGIILDTGKQEYSGFISNKELT-NAQIDVNTIVPGLVILCSIASKPSGR-TINLKPTTAT 295
Query: 178 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 237
VS T SID + PG++V + + ENG++ GT+ + +QN F
Sbjct: 296 VSAKKTTVSTISSIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQN-FELKE 354
Query: 238 WKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIYDQ 288
K+ Y V AR+L V + T + + L++ P++L S + +G ++DQ
Sbjct: 355 LKHKYAIGSTVKARVLAVLLKNGTKKLI-LSILPHVLQLGDDSSQTEALEAFPIGHVFDQ 413
Query: 289 SKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
K S+ + I ++ + L Y GS + R++GF +
Sbjct: 414 VKVIGNDKHYVYVSF-----GSSSLFGQIHQSKFDDNKSL-LDYSIGSTHKSRVIGFNEV 467
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPH 405
+ L ++ + DV G ++ +++ V D G V+F K P
Sbjct: 468 DNLLILTFESKVIDAEYLNVRDVPIGKLLPNVEILKVLEDGVGINVKFFDEFKGFVPGNQ 527
Query: 406 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL-AILSSYAEATDRLIT 464
MS+ ++V P +KF+VG + R+L KR VT +K LV + ILS +A T
Sbjct: 528 MSDIKLVYPERKFRVGTKTKGRLLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGFKT 587
Query: 465 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
+ + K +GC V F+ ++ F P++E+ + SS +GQ+VK RI+ +R
Sbjct: 588 NAIVEKFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDVNKEQKR 647
Query: 525 INLSFM----MKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA 580
+ ++ + + +E + + +G I L+
Sbjct: 648 LVVTLKQSSELSNAQKNEISKLVSGKSIVKTVVVEKTKDSVLVELEGSHLRGVIYDGQLS 707
Query: 581 D-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSAQQ--LPSDASHIH 635
D + E + + G E ++L+LD + + ++ +AK SLI++++ P + S I
Sbjct: 708 DGNYEQNRALAKRLAIG-ETLEVLILDKDLKARTVIATAKKSLIDASKSKSFPVEFSDIA 766
Query: 636 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
N VV GYV ++ G FV F GRLTG DLSK ++ QS+ +L V+
Sbjct: 767 VNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCRVLSVD 826
Query: 696 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKI-AMLQSSKHNGSELKWVEGFIIGSVIE 754
E R L+L S + D + + +KI A Q + +K V+G + +
Sbjct: 827 KENERFLLTLNNSSSFTKDDEQLIKPIDATKKIVADYQPGETTKVVIKAVKGTQLNVQLA 886
Query: 755 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 806
+ D + F+ D+ HQ ++ + G + ++ + A+
Sbjct: 887 DNLQGRVD--ITQCFKSIKDIKNL---HQPLASSFQKGETLDVKVIGIHDAK 933
Score = 237 (88.5 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 172/797 (21%), Positives = 314/797 (39%)
Query: 604 VLDNESSNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
+L+ L++ + +L+N ++ SD + V + GC V F G L
Sbjct: 550 LLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGFKTNAIVEKFVPNGCIVSFFGNLKA 609
Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 722
F P+++ + D S +GQ V+ ILDVN E R+ ++LKQS ++ S Q++
Sbjct: 610 FLPKTEISETFVQDASSYLKIGQIVKVRILDVNKEQKRLVVTLKQS----SELSNAQKN- 664
Query: 723 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 782
+I+ L S K I+ +V+ K +S V+V E S + G I
Sbjct: 665 ----EISKLVSGKS-----------IVKTVVVEKTKDS----VLVELEG-SHLRGVIYDG 704
Query: 783 QLAGATVESGSVIQAAILDVAKAERLV---DLSLKTVFIDRFREAXXXXXXXXXXXXXXX 839
QL+ E + + E L+ DL +TV +
Sbjct: 705 QLSDGNYEQNRALAKRLAIGETLEVLILDKDLKARTVIATAKKSLIDASKSKSFPVEFS- 763
Query: 840 XXDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIAT 899
D+ V+ V V+ V L ++ + A N + K+F QS+
Sbjct: 764 --DIAVNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCR 821
Query: 900 VMALPSSSTAGRLLL-----LLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLEL 954
V+++ + L L K Y G + I +K +L
Sbjct: 822 VLSVDKENERFLLTLNNSSSFTKDDEQLIKPIDATKKIVADYQPGETTKVVIKAVKGTQL 881
Query: 955 RLKFGIGFHGRIHITE----VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1010
++ GR+ IT+ + D K N+ + L S+F+ G+T+ ++I + + +FL
Sbjct: 882 NVQLADNLQGRVDITQCFKSIKDIK-NLHQPLASSFQKGETLDVKVIGIHDAKN--HTFL 938
Query: 1011 ---WELSIKPSMLTVS----EIGSKLL--FEECDVSIGQRVTGYVYKVDNEWALLTISRH 1061
S + ++L +S +I +KLL + D G V +V + N ++IS
Sbjct: 939 PITHRKSNRTTILELSLNNPQINNKLLTDLKLADFKQGDEVLAFVNNITNGMVWVSISPT 998
Query: 1062 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP-----FQDGI 1116
+K ++ +LD + S Q+ + IG A+ V ++ + ++L L R F+D
Sbjct: 999 IKGRIPMLDLTEDGSIFQDIDNKLPIGNAINVKVKQVDLQHQILVLTARKNFIEKFEDVR 1058
Query: 1117 SDKT-----VDISNDNMQTFIHEGDIVGGRISKILSGVGGL---VVQIGPHLYGRVHFTE 1168
D+T + I +++ + I ++ L+ V + ++ +V +
Sbjct: 1059 QDQTYPARIIKIKPNHVLVELGNNVIASSFVTDALNDYSDKLDHVFNVNDYVSAKVLDID 1118
Query: 1169 LKNICVSDPLSGYDEGQ---FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1225
N +S L G + +S GQ +K V IS G + +SL S+
Sbjct: 1119 STNKRISVSLRTDKAGSDKVINSISDLTRGQVIKGFVKNISNN--GVY---VSLGRSIYA 1173
Query: 1226 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1285
+ SDLS D+ K + PN V G + N +G +M ++ + L
Sbjct: 1174 L--VRVSDLS---DSYLKDWQNF--FKPNQPVIGKIVNCKQEGRILMTLKESEVNGELK- 1225
Query: 1286 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV--TLKTSD---SRTASQSEINNLSN 1340
+ + IG + G V S V++ T+ S S+++++N+ +
Sbjct: 1226 -----IMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGTVNVSGLCHHSEISENDVDNVKS 1280
Query: 1341 LH-VGDIVIGQIKRVES 1356
L GD V +I +++S
Sbjct: 1281 LFGTGDRVKVKILKIDS 1297
Score = 169 (64.5 bits), Expect = 5.3e-53, Sum P(2) = 5.3e-53
Identities = 38/172 (22%), Positives = 90/172 (52%)
Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
+EK ED+ + + + + L + A +++ + Y + + F + V
Sbjct: 1051 IEKFEDVRQDQTYPARIIKIKPNHVLVELGNNVIASSFVTDALNDYSDKLDHVFNVNDYV 1110
Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
+ +VL ++ +KR+ V+L+T + S IN++S+L G ++ G +K + + G+++++
Sbjct: 1111 SAKVLDIDSTNKRISVSLRTD--KAGSDKVINSISDLTRGQVIKGFVKNISNNGVYVSL- 1167
Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
++ L VS+LS+ ++ + + ++ + V KI+ K++ RI + +K S
Sbjct: 1168 GRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKIVNC-KQEGRILMTLKES 1218
Score = 141 (54.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 57/233 (24%), Positives = 111/233 (47%)
Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
GQ VK ++L++++ + + ++L+ S + +S+ +++S V GK + K
Sbjct: 631 GQIVKVRILDVNKEQK---RLVVTLKQSSE-LSNAQKNEISKLVS--GKSIVK------T 678
Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSV 1311
++V+ +V + + L + LSDG E K IG+ + +L
Sbjct: 679 VVVEKTKDSVLVE----LEGSHLRGVIYDGQLSDGNYEQNRALAKRLAIGETLEVLILDK 734
Query: 1312 EPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
+ ++ V T K S + S+S S++ V D+V G +K V S GLF+T L G
Sbjct: 735 DLKARTVIATAKKSLIDASKSKSFPVEFSDIAVNDVVRGYVKSVTSLGLFVTFTG-RLTG 793
Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR--ISLGMKSSYFKND 1421
L ++++ +++ + + + ++L VDKE R ++L SS+ K+D
Sbjct: 794 LILAKYVTKNANEDLSKKFHKYQSINCRVLSVDKENERFLLTLNNSSSFTKDD 846
Score = 136 (52.9 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 45/168 (26%), Positives = 81/168 (48%)
Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
N IV+ +V N GC + L A + + +S+ +V+ IG++V R+L V
Sbjct: 588 NAIVEKFVPN----GCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDVNK 643
Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY--GLFITIENTNLVGL 1371
KR+ VTLK S + +Q N +S L G ++ + VE + + +E ++L G+
Sbjct: 644 EQKRLVVTLKQSSELSNAQK--NEISKLVSGKSIVKTVV-VEKTKDSVLVELEGSHLRGV 700
Query: 1372 CHVSELSEDHVDNIETIYRA---GEKVKVKILKVDKEKRRISLGMKSS 1416
+ +LS+ + + + + GE ++V IL D + R + K S
Sbjct: 701 IYDGQLSDGNYEQNRALAKRLAIGETLEVLILDKDLKARTVIATAKKS 748
Score = 124 (48.7 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 46/179 (25%), Positives = 86/179 (48%)
Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
+ D++ N +V+GYVK+VTS G F+ + +L +L ++ E K+F + +
Sbjct: 761 EFSDIAVNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINC 820
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEIN---NLSNLHVGDIVIGQ-----IKRVESYG 1358
RVLSV+ ++R +TL S S T ++ + + V D G+ IK V+
Sbjct: 821 RVLSVDKENERFLLTLNNSSSFTKDDEQLIKPIDATKKIVADYQPGETTKVVIKAVKGTQ 880
Query: 1359 LFITIENTNLVGLCHVSEL--SEDHVDNIE----TIYRAGEKVKVKILKVDKEKRRISL 1411
L + + + NL G +++ S + N+ + ++ GE + VK++ + K L
Sbjct: 881 LNVQLAD-NLQGRVDITQCFKSIKDIKNLHQPLASSFQKGETLDVKVIGIHDAKNHTFL 938
Score = 92 (37.4 bits), Expect = 3.6e-83, Sum P(2) = 3.6e-83
Identities = 72/336 (21%), Positives = 138/336 (41%)
Query: 842 DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 901
DL V+ + V+ ++++ ++L + +S G+ S + + + G ++ ++
Sbjct: 221 DLIVNNILQCSVKSIEDHGIILDTGKQEYS-GFISNKELTNAQIDVNTIVPGLVILCSIA 279
Query: 902 ALPSSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRLK-FGI 960
+ PS T L A G +V A I ++ L K +G+
Sbjct: 280 SKPSGRTIN--LKPTTATVSAKKTTVSTISSIDSIQPGVIVDALINDVTENGLVTKVYGL 337
Query: 961 GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1020
G I ++++ + + ++ L + IG TV AR++A K KK L SI P +L
Sbjct: 338 -VDGTIALSQIQNFE---LKELKHKYAIGSTVKARVLAVLLKNGTKKLIL---SILPHVL 390
Query: 1021 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF--ILDSAYEPSE- 1077
+ + S+ E IG V V + N+ + +S + LF I S ++ ++
Sbjct: 391 QLGDDSSQTEALEA-FPIGH-VFDQVKVIGNDKHYVYVSFG-SSSLFGQIHQSKFDDNKS 447
Query: 1078 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1137
L ++ IG V+ N+ LL L F+ K +D N++ + G +
Sbjct: 448 LLDYS----IGSTHKSRVIGFNEVDNLLILT---FES----KVIDAEYLNVRD-VPIGKL 495
Query: 1138 VGG-RISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1172
+ I K+L G+ V+ G V ++ +I
Sbjct: 496 LPNVEILKVLEDGVGINVKFFDEFKGFVPGNQMSDI 531
Score = 78 (32.5 bits), Expect = 1.1e-81, Sum P(2) = 1.1e-81
Identities = 46/237 (19%), Positives = 97/237 (40%)
Query: 316 TISDVAEEEVRKLEKKYKEGSCVRVRIL----GFRHLEGLATGILKASAFEGLVFTHSDV 371
T E+E L K +K GS ++ +I +++ + + I S E L D+
Sbjct: 165 TFKSKTEKEFPDLFKIFKLGSWLKAKITTSHEDYKNKKRIELTIEPESVNENLEV--DDL 222
Query: 372 KPGMVVKGKVIAVDSFGAIV-----QFPGGVKALCPLPHMSEFEIVKPGKKF--KVGAEL 424
+++ V +++ G I+ ++ G + + + PG + ++
Sbjct: 223 IVNNILQCSVKSIEDHGIILDTGKQEYSGFISNKELTNAQIDVNTIVPGLVILCSIASKP 282
Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
R + +K TV+ KKT V + +SS +I I + ++G + Y V
Sbjct: 283 SGRTINLKPTTATVSAKKTTVST----ISSIDSIQPGVIVDALINDVTENGLVTKVYGLV 338
Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI--PASRRINLSFMMKPTRVSED 539
G S++ E Y +G VK R+++ + ++++ LS + ++ +D
Sbjct: 339 DGTIALSQIQNFELKELKHKYAIGSTVKARVLAVLLKNGTKKLILSILPHVLQLGDD 395
Score = 54 (24.1 bits), Expect = 6.4e-41, Sum P(2) = 6.4e-41
Identities = 36/201 (17%), Positives = 79/201 (39%)
Query: 939 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
G +++ + I + + G + + +++++D +N F K Q V +I+
Sbjct: 1148 GQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFF---KPNQPVIGKIV- 1203
Query: 999 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1058
+ K+ +++K S + E+ F+ D+ IG G V + + +
Sbjct: 1204 -----NCKQEGRILMTLKESEVN-GELKIMKTFD--DLQIGDIFEGTVTSTTDFGVFVKL 1255
Query: 1059 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1118
+ S +++ + F G V +L I+ EK+ L L ++ I+D
Sbjct: 1256 DGTVNVSGLCHHSEISENDVDNVKSLFGTGDRVKVKILKIDSEKRQLSLGMKASYF-ITD 1314
Query: 1119 KTVDISNDNMQTFIHEGDIVG 1139
+ ND+ + + VG
Sbjct: 1315 SGKE-DNDDEDVEMEDASEVG 1334
Score = 48 (22.0 bits), Expect = 1.6e-78, Sum P(2) = 1.6e-78
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 52 ANEDNLLPTIFHVGQLVSCIVLQLDDDKK 80
ANED L FH Q ++C VL +D + +
Sbjct: 804 ANED--LSKKFHKYQSINCRVLSVDKENE 830
Score = 47 (21.6 bits), Expect = 2.0e-78, Sum P(2) = 2.0e-78
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 981 NLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKP 1017
+LF FK+G + A+I ++ D K EL+I+P
Sbjct: 176 DLFKIFKLGSWLKAKIT--TSHEDYKNKKRIELTIEP 210
>SGD|S000004842 [details] [associations]
symbol:RRP5 "RNA binding protein involved in synthesis of
both 18S and 5.8S rRNAs" species:4932 "Saccharomyces cerevisiae"
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0032040 "small-subunit processome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
Pfam:PF00575 PROSITE:PS50126 SMART:SM00386 SGD:S000004842
GO:GO:0005730 GO:GO:0008266 EMBL:BK006946 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z49939
GO:GO:0030686 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472
InterPro:IPR022967 SMART:SM00316 GO:GO:0000464 GO:GO:0000480
eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
HOGENOM:HOG000167551 OrthoDB:EOG4N07P1 PIR:S57596
RefSeq:NP_013956.1 ProteinModelPortal:Q05022 SMR:Q05022
DIP:DIP-6535N IntAct:Q05022 MINT:MINT-680694 STRING:Q05022
PaxDb:Q05022 PeptideAtlas:Q05022 EnsemblFungi:YMR229C GeneID:855269
KEGG:sce:YMR229C CYGD:YMR229c OMA:FYGNVRG NextBio:978879
Genevestigator:Q05022 GermOnline:YMR229C Uniprot:Q05022
Length = 1729
Score = 848 (303.6 bits), Expect = 1.6e-108, Sum P(3) = 1.6e-108
Identities = 236/770 (30%), Positives = 386/770 (50%)
Query: 1061 HLKAQLFILDSAYEPSELQEFQ------RRFHIGKAVTGHVLSINKEKKLLRLVLRP-FQ 1113
H ++ +L+ + +PSEL+ + +IG+ +TG V N L L + P +
Sbjct: 970 HKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVN--NSSGNHLWLTISPVLK 1027
Query: 1114 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG-PHLYGRVHFT-ELKN 1171
IS +D++ DN F + V S + V + + G + G+ H +
Sbjct: 1028 ARIS--LLDLA-DNDSNFSENIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDINMST 1084
Query: 1172 ICVSDPLSGY-----DEGQFDPLSGYDEG-QFVKCKVLEISRTVRGTFHVELS--LRSSL 1223
I V D L G ++ L G F+ + + S T++ F +++ + +++
Sbjct: 1085 IKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFEDKINNVIPTTV 1144
Query: 1224 DGMSSTNSS-DLSTDVDTPG-KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1281
+ N +LS T + ++ EDL IV G VKNV KG F+ LSRK++A V
Sbjct: 1145 LSVDEQNKKIELSLRPATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFV 1204
Query: 1282 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1341
+S LSD Y++ +K + + V G+V++ + S R+ +TL+ S+ + S++
Sbjct: 1205 PVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDS-RISLTLRESEIN-GDLKVLKTYSDI 1262
Query: 1342 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
GD+ G IK V +G+F+ ++NT N+ GL H++E+++ +++ ++ G++VK +L
Sbjct: 1263 KAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVL 1322
Query: 1401 KVDKEKRRISLGMKSSYFKNDADNLQMXXXXXXXXXXXXXXXYNRSSLLENSSVAVQDMD 1460
K + EK++ISL +K+S+F +A+ + + ++ ++ D D
Sbjct: 1323 KTNPEKKQISLSLKASHFSKEAE---LASTTTTTTTVDQLEKEDEDEVMADAGF--NDSD 1377
Query: 1461 MESEDGG-SLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDXXXXXXX 1519
ES+ G + +A + S L ++ D I +Q +E D
Sbjct: 1378 SESDIGDQNTEVADRKPETSSDGLSLSAGF---DWTASIL-DQAQEEEESDQDQEDFTEN 1433
Query: 1520 XXXXXXXXXXXXXXXXXXXXXXDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEK 1579
AP + +FERL+ +PNSS VW+ YMAF L ++++EK
Sbjct: 1434 KKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEK 1493
Query: 1580 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1639
AR +AERAL+TIN REE EKLNIW+A NLEN +G EE + +VF RA QY D +H
Sbjct: 1494 ARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSYTIHT 1551
Query: 1640 ALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWXXXXXXXXXXXXEG-VQAVVQRALLS 1697
LLG+YE +E+ A EL KKF +W E + ++ AL +
Sbjct: 1552 KLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKA 1611
Query: 1698 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1757
LP+ HI+ + + A LEF G +RGRS+FEG++++ PKR DLW++Y+DQE++ D +
Sbjct: 1612 LPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKV 1671
Query: 1758 RGLFERAIXXXXXXXXXXXXXXXYLEYEKSVGEEERIEYVKQKAMEYVES 1807
LFER I +L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1672 EDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721
Score = 221 (82.9 bits), Expect = 2.3e-40, Sum P(3) = 2.3e-40
Identities = 80/246 (32%), Positives = 121/246 (49%)
Query: 938 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTAR 995
+GS+V+A+I +K +L + HGR+ I EV D + + SN+K + +
Sbjct: 894 IGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVK 953
Query: 996 IIA----KSNK--P---DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
II KS+K P + K+ + ELS+KPS L E+ +K L EE ++IGQ +TG+V
Sbjct: 954 IIGNHDVKSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSL-EE--INIGQELTGFV 1010
Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLL 1105
LTIS LKA++ +LD A S E + F +G A+ V SI++E
Sbjct: 1011 NNSSGNHLWLTISPVLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE---- 1066
Query: 1106 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1165
F + I VDI NM T I GD + GR+ KI +++ +G + G
Sbjct: 1067 ----HGFVNAIGKSHVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTGISF 1116
Query: 1166 FTELKN 1171
T+ N
Sbjct: 1117 ITDALN 1122
Score = 207 (77.9 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 128/611 (20%), Positives = 234/611 (38%)
Query: 447 SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
++L ++S+Y A + T I + +GC + F+ G+ GF P SE+ P
Sbjct: 589 NELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPE 648
Query: 503 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXX 562
+GQ V +++ RRI + + + ++
Sbjct: 649 EHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTK 708
Query: 563 XXIAKGYS----KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSA 616
+ +G I HL+D +E ++ G E L++ D + +S
Sbjct: 709 DSVIVEIPDVGLRGVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSL 768
Query: 617 KYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
K SLI A++ LP D ++ + +H Y+ +I + G FV F G+ G S AVD
Sbjct: 769 KSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVD 828
Query: 672 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 731
+ D+SK +Y+ QSV +L + + + LSLK A ++E ++K+
Sbjct: 829 SRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLK--------APKVKEE---KKKVESN 877
Query: 732 QSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITH 781
+ S W + IGS+++ K+ + N V+++ H D Y IT
Sbjct: 878 IEDPVDSSIKSW-DDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITD 936
Query: 782 HQLAGATVESGSVIQAAIL---DVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXX 838
+ + + VI+ I+ DV K+ + + ++ K +
Sbjct: 937 KKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTK 995
Query: 839 XXXDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVI 897
++ + Q + V N+L L++ P I ++D N F + N +SV
Sbjct: 996 SLEEINIGQELTGFVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVF 1050
Query: 898 ATVMALPSS-STAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRL 956
AL ++ R + AI VG + + +I + L
Sbjct: 1051 PLGSALQVKVASIDREHGFVNAIGKSHVDINMSTIK-----VGDELPGRVLKIAEKYVLL 1105
Query: 957 KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIK 1016
G G IT+ +D S ++ F + KI + +++ + KK ELS++
Sbjct: 1106 DLGNKVTGISFITDALNDFSLTLKEAFED-KINNVIPTTVLSVDEQN--KKI---ELSLR 1159
Query: 1017 PSMLTVSEIGS 1027
P+ I S
Sbjct: 1160 PATAKTRSIKS 1170
Score = 197 (74.4 bits), Expect = 1.6e-108, Sum P(3) = 1.6e-108
Identities = 60/214 (28%), Positives = 104/214 (48%)
Query: 47 DNEIEANEDNLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWXXXXXXXXXXXX 100
D + + ++ N LP + FH+GQ + C V++ L+ K+ K++I
Sbjct: 190 DEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNIYA 249
Query: 101 XXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VV 159
+ V+ + A VKSIEDHG L GLP FTGF+ + + + PG + G +
Sbjct: 250 DEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNIT 306
Query: 160 RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 219
+ DR+ +V + D +K +T+ SID ++PG +V +SI +NG+
Sbjct: 307 KKSDRS--IVVNTDFSDKKNK-ITQIS---SIDAIIPGQIVDLLCESITKNGIAGKVFGL 360
Query: 220 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 253
+G V++ HL+ TF + K+ + + RI+
Sbjct: 361 VSGVVNVSHLR-TFSEEDLKHKFVIGSSIRCRII 393
Score = 195 (73.7 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 92/472 (19%), Positives = 213/472 (45%)
Query: 960 IGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSM 1019
+G G I++ ++D + +IG +T +I K + + ++ +S+K S+
Sbjct: 718 VGLRGVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTR-----TRVFNMSLKSSL 772
Query: 1020 LTVSEIGS-KLLFEEC-DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSE 1077
+ ++ + L +++ D++ + Y+ + ++ L ++ + K +L S S
Sbjct: 773 IKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKG--LFVAFNGKFIGLVLPSYAVDSR 830
Query: 1078 LQEFQRRFHIGKAVTGHVLSIN-KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1136
+ + F+I ++VT ++L + K +K L + P K D + + I D
Sbjct: 831 DIDISKAFYINQSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWD 890
Query: 1137 --IVGGRISKILSGV--GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
+G + + V L V + +L+GRV E+ + + ++ D+ Q PLS Y
Sbjct: 891 DLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFD--TYEEIT--DKKQ--PLSNY 944
Query: 1193 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
+ +K K++ + V+ H L + + S S +++ + H + +E+++
Sbjct: 945 KKDDVIKVKIIG-NHDVKS--HKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEIN 1001
Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG---YVESPEKEFPIGKLVAGRVL 1309
+ G+V N + ++ +S L A++ L +L+D + E+ E FP+G + +V
Sbjct: 1002 IGQELTGFVNNSSGNHLWLTISPVLKARISLLDLADNDSNFSENIESVFPLGSALQVKVA 1061
Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
S++ V K S +IN +S + VGD + G++ ++ + + + N +
Sbjct: 1062 SIDREHGFVNAIGK-------SHVDIN-MSTIKVGDELPGRVLKIAEKYVLLDLGN-KVT 1112
Query: 1370 GLCHVSELSEDHVDNIETIY--RAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
G+ +++ D ++ + + + +L VD++ ++I L ++ + K
Sbjct: 1113 GISFITDALNDFSLTLKEAFEDKINNVIPTTVLSVDEQNKKIELSLRPATAK 1164
Score = 173 (66.0 bits), Expect = 1.6e-108, Sum P(3) = 1.6e-108
Identities = 66/274 (24%), Positives = 120/274 (43%)
Query: 369 SDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
+D+ G ++ ++ +V S G ++ F G KA P H+S+ +V P +KFK+G+++
Sbjct: 505 NDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKG 564
Query: 427 RVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFV 478
RV+ V S+ + VT KK+LV ++L ++S+Y A + T I + +GC +
Sbjct: 565 RVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCII 624
Query: 479 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 538
F+ G+ GF P SE+ P +GQ V +++ RRI + + + ++
Sbjct: 625 SFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQ 684
Query: 539 DXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYS----KGTIPTEHLAD-HLEHATVMKSVI 593
+ +G I HL+D +E +
Sbjct: 685 QKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGLRGVIYVGHLSDSRIEQNRAQLKKL 744
Query: 594 KPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ 626
+ G E L++ D + +S K SLI A++
Sbjct: 745 RIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKK 778
Score = 149 (57.5 bits), Expect = 2.1e-17, Sum P(5) = 2.1e-17
Identities = 49/186 (26%), Positives = 93/186 (50%)
Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
A+A + +H D+K G +V G V V+ G V V+A P+ +S+ +K KK
Sbjct: 1161 ATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSD-SYLKEWKK 1219
Query: 418 FKVGAELVF-RVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 475
F + V +V+ + RI++T +++ + L +L +Y++ + G I + G
Sbjct: 1220 FYKPMQYVLGKVVTCDEDSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSVTDFG 1279
Query: 476 CFVRFYN--GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 533
FV+ N V G A +E+ + S+++ VG VK ++ + P ++I+LS +K
Sbjct: 1280 VFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLS--LKA 1337
Query: 534 TRVSED 539
+ S++
Sbjct: 1338 SHFSKE 1343
Score = 140 (54.3 bits), Expect = 4.0e-18, Sum P(4) = 4.0e-18
Identities = 61/249 (24%), Positives = 114/249 (45%)
Query: 1177 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1236
PL D P + G VK +V+ ++ RG HV +L+ SL + N L +
Sbjct: 541 PLHISDTRLVYPERKFKIGSKVKGRVISVNS--RGNVHV--TLKKSLVNIED-NELPLVS 595
Query: 1237 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1296
+ EK E +Q + N GC I L + S +S+ +V+ PE+
Sbjct: 596 TYENAKNIKEKNEKTLAT--IQVFKPN----GCIISFFGGLSGFLPNSEISEVFVKRPEE 649
Query: 1297 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD--IVIGQIKRV 1354
+G+ V ++L V+ +R+ T K S+ + A Q + + N+ G I + I++
Sbjct: 650 HLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKD--TIENIVPGRTIITVHVIEKT 707
Query: 1355 ESYGLFITIENTNLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKR-RI-SL 1411
+ + + I + L G+ +V LS+ ++ N + + ++ L +DK+ R R+ ++
Sbjct: 708 KD-SVIVEIPDVGLRGVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNM 766
Query: 1412 GMKSSYFKN 1420
+KSS K+
Sbjct: 767 SLKSSLIKD 775
Score = 124 (48.7 bits), Expect = 2.4e-20, Sum P(4) = 2.4e-20
Identities = 40/138 (28%), Positives = 66/138 (47%)
Query: 574 IPTEHLADHLEHATVMKSVIKP-GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 632
+P L+D + K KP Y +++ D E S + L+ + S IN ++ S
Sbjct: 1204 VPVSKLSD--SYLKEWKKFYKPMQYVLGKVVTCD-EDSRISLTLRESEINGDLKVLKTYS 1260
Query: 633 HIHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 690
I V G + ++ + G FV+ +TG A ++ D + DLS + VG V++
Sbjct: 1261 DIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAI 1320
Query: 691 ILDVNSETGRITLSLKQS 708
+L N E +I+LSLK S
Sbjct: 1321 VLKTNPEKKQISLSLKAS 1338
Score = 103 (41.3 bits), Expect = 4.7e-28, Sum P(3) = 4.7e-28
Identities = 55/234 (23%), Positives = 105/234 (44%)
Query: 938 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
VG + + +I + L G G IT+ +D S ++ F + KI + ++
Sbjct: 1087 VGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KINNVIPTTVL 1145
Query: 998 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1057
+ + KK ELS++P+ I S E D+ G+ V G V V+++ +
Sbjct: 1146 SVDEQN--KKI---ELSLRPATAKTRSIKS----HE-DLKQGEIVDGIVKNVNDKGIFVY 1195
Query: 1058 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS 1117
+SR K + F+ S S L+E+++ + + V G V++ +++ ++ L LR +
Sbjct: 1196 LSR--KVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSRI-SLTLRESEINGD 1252
Query: 1118 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTEL 1169
K + +D I GD+ G I + G+ V++ ++ G H TE+
Sbjct: 1253 LKVLKTYSD-----IKAGDVFEGTIKSVTDF--GVFVKLDNTVNVTGLAHITEI 1299
Score = 100 (40.3 bits), Expect = 9.7e-28, Sum P(3) = 9.7e-28
Identities = 46/185 (24%), Positives = 88/185 (47%)
Query: 965 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE 1024
RI + ++ D+ SN EN+ S F +G + ++ + D + F V+
Sbjct: 1029 RISLLDLADNDSNFSENIESVFPLGSALQVKVASI----DREHGF------------VNA 1072
Query: 1025 IG-SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS-ELQE-F 1081
IG S + + +G + G V K+ ++ LL + + FI D+ + S L+E F
Sbjct: 1073 IGKSHVDINMSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAF 1132
Query: 1082 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI-SNDNMQTFIHEGDIVGG 1140
+ + I + VLS++++ K + L LRP + KT I S+++++ +G+IV G
Sbjct: 1133 EDK--INNVIPTTVLSVDEQNKKIELSLRP----ATAKTRSIKSHEDLK----QGEIVDG 1182
Query: 1141 RISKI 1145
+ +
Sbjct: 1183 IVKNV 1187
Score = 95 (38.5 bits), Expect = 2.9e-18, Sum P(3) = 2.9e-18
Identities = 38/190 (20%), Positives = 84/190 (44%)
Query: 1246 EKIEDLSPNM-IVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGYVESPE---KEFPI 1300
+ IE++ P I+ +V T + + L + + +LSD +E K+ I
Sbjct: 687 DTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGLRGVIYVGHLSDSRIEQNRAQLKKLRI 746
Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI----NNLSNLHVGDIVIGQIKRVES 1356
G + G V+ + ++ ++LK+S + A + + +++ +L+ + IK +
Sbjct: 747 GTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISD 806
Query: 1357 YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
GLF+ N +GL S + +I + + V V +L+ D + ++ L +K+
Sbjct: 807 KGLFVAF-NGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLKAP 865
Query: 1417 YFKNDADNLQ 1426
K + ++
Sbjct: 866 KVKEEKKKVE 875
Score = 87 (35.7 bits), Expect = 4.2e-15, Sum P(4) = 4.2e-15
Identities = 46/240 (19%), Positives = 103/240 (42%)
Query: 307 TPVSTPAYVTISDVAEEEVR---KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
+PV A +++ D+A+ + +E + GS ++V++ G I K+
Sbjct: 1023 SPV-LKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN 1081
Query: 364 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH-MSEFEI-VKPGKKFKVG 421
+ S +K G + G+V+ + ++ V + + +++F + +K + K+
Sbjct: 1082 M----STIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFEDKIN 1137
Query: 422 AELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 479
+ VL V ++K+I ++ + K++ + S+ + I G + + G FV
Sbjct: 1138 NVIPTTVLSVDEQNKKIELSLRPATAKTRS--IKSHEDLKQGEIVDGIVKNVNDKGIFVY 1195
Query: 480 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
V+ F P S+L E Y Q V ++++ SR +S ++ + ++ D
Sbjct: 1196 LSRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR---ISLTLRESEINGD 1252
Score = 86 (35.3 bits), Expect = 2.2e-99, Sum P(3) = 2.2e-99
Identities = 45/209 (21%), Positives = 86/209 (41%)
Query: 246 KKVNARILFVDPTSRAVGLTLNP-YLLHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXI 304
+ +++R+L P L+ +P YL + + +G++ +
Sbjct: 472 ENLSSRVLGYSPVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIF 531
Query: 305 PST-PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA-FE 362
S P + ISD + E+K+K GS V+ R++ + + K+ E
Sbjct: 532 NGQFKASVPP-LHISDT---RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587
Query: 363 G----LVFTHSDVKPGMVVKGKVIA-VDSF---GAIVQFPGGVKALCPLPHMSEFEIVKP 414
LV T+ + K K +A + F G I+ F GG+ P +SE + +P
Sbjct: 588 DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647
Query: 415 GKKFKVGAELVFRVLGVKS--KRITVTHK 441
+ ++G ++ ++L V + +RI T K
Sbjct: 648 EEHLRLGQTVIVKLLDVDADRRRIIATCK 676
Score = 85 (35.0 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 27/107 (25%), Positives = 51/107 (47%)
Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
+L +D ++ + LS + + + + + S + +V G V N+ + G FV ++
Sbjct: 1144 VLSVDEQNKKIELSLRPATAKT-RSIKSHED-LKQGEIVDGIVKNVNDKGIFVYLSRKVE 1201
Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
F P SK D + K Y Q V ++ + E RI+L+L++S
Sbjct: 1202 AFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCD-EDSRISLTLRES 1247
Score = 79 (32.9 bits), Expect = 3.2e-83, Sum P(2) = 3.2e-83
Identities = 37/149 (24%), Positives = 67/149 (44%)
Query: 113 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLL-QGV----VRSIDRTRK 167
AY+KSI D G + F F G + + ++ ID+ + Q V +R+ D+ +K
Sbjct: 799 AYIKSISDKGLFVAFN-GKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQK 857
Query: 168 VVYLSSDPDTVS--KCVTKDLKG---ISI---DLLVPGMMVSTRVQSILENGVMLSFLTY 219
+ P K V +++ SI D L G +V +++S+ +N + +
Sbjct: 858 FLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKKNQLNVILAAN 917
Query: 220 FTGTVDIFHLQNTFPT-TNWKNDYNQHKK 247
G VDI + +T+ T+ K + +KK
Sbjct: 918 LHGRVDIAEVFDTYEEITDKKQPLSNYKK 946
Score = 73 (30.8 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 725 EEKIAM-LQSSKHNGS--ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 781
+ +I++ L+ S+ NG LK G V EG + DFGV V + +V G
Sbjct: 1237 DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHI 1296
Query: 782 HQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 814
++A E G ++A +L ++ + LSLK
Sbjct: 1297 TEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLK 1336
Score = 70 (29.7 bits), Expect = 7.7e-82, Sum P(3) = 7.7e-82
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 974 DKSNVVENLFSNFKIGQTVTARIIAKSN-KPDMKKSFLW--ELSIKPSMLTV 1022
DKSN + NL F IGQ + +I ++ +P KKS EL+I+PS + +
Sbjct: 196 DKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNI 247
Score = 69 (29.3 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 40/187 (21%), Positives = 81/187 (43%)
Query: 1244 HLEKIED-LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD---GYVESPEK-EF 1298
H+ K+ED L + + T + C I + D++ L L D G V S E
Sbjct: 412 HILKLEDALRSTEGLDAFPIGYTFESCSI---KGRDSEYLYLALDDDRLGKVHSSRVGEI 468
Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG-QIKRVESY 1357
+ ++ RVL P+ ++ ++D + + +++ +G+++ +I V S
Sbjct: 469 ENSENLSSRVLGYSPVD---DIYQLSTDPKYLKLKYLRT-NDIPIGELLPSCEITSVSSS 524
Query: 1358 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1417
G+ + I N +S+ + E ++ G KVK +++ V+ + + + +K S
Sbjct: 525 GIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISVNS-RGNVHVTLKKSL 583
Query: 1418 FKNDADN 1424
N DN
Sbjct: 584 V-NIEDN 589
Score = 65 (27.9 bits), Expect = 1.1e-27, Sum P(4) = 1.1e-27
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 954 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1013
++L + G HITE+ D K E+L + F +G V A I+ K+N P+ K+ L
Sbjct: 1282 VKLDNTVNVTGLAHITEIADKKP---EDLSALFGVGDRVKA-IVLKTN-PEKKQI---SL 1333
Query: 1014 SIKPS 1018
S+K S
Sbjct: 1334 SLKAS 1338
Score = 63 (27.2 bits), Expect = 5.8e-97, Sum P(3) = 5.8e-97
Identities = 40/172 (23%), Positives = 74/172 (43%)
Query: 606 DNESSNLLLSAKYSLINSAQQLPSDASHI-----HPNSVVHGYV---CNIIE---TGCFV 654
+N SS +L YS ++ QL +D ++ N + G + C I +G +
Sbjct: 472 ENLSSRVL---GYSPVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIEL 528
Query: 655 R-FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
+ F G+ P D + + + +G V+ ++ VNS G + ++LK+S +
Sbjct: 529 KIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISVNSR-GNVHVTLKKSLVNIE 587
Query: 714 D-----ASFMQEHFLLEEK----IAMLQSSKHNGSELKW---VEGFIIGSVI 753
D S + ++EK +A +Q K NG + + + GF+ S I
Sbjct: 588 DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEI 639
Score = 54 (24.1 bits), Expect = 5.1e-96, Sum P(3) = 5.1e-96
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 938 VGSLVQA-EITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 995
+G L+ + EIT + + LK G F + ++D + E FKIG V R
Sbjct: 509 IGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPER---KFKIGSKVKGR 565
Query: 996 IIAKSNKPD----MKKSFL 1010
+I+ +++ + +KKS +
Sbjct: 566 VISVNSRGNVHVTLKKSLV 584
Score = 52 (23.4 bits), Expect = 8.3e-96, Sum P(3) = 8.3e-96
Identities = 29/132 (21%), Positives = 59/132 (44%)
Query: 971 VNDDK-SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL 1029
++DD+ V + + + +++R++ S D +++LS P L + + +
Sbjct: 452 LDDDRLGKVHSSRVGEIENSENLSSRVLGYSPVDD-----IYQLSTDPKYLKLKYLRTN- 505
Query: 1030 LFEECDVSIGQRVTGY-VYKVDNEWALLTI-SRHLKAQLFILDSAYEPSELQEFQRRFHI 1087
D+ IG+ + + V + L I + KA + L + + L +R+F I
Sbjct: 506 -----DIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHIS--DTRLVYPERKFKI 558
Query: 1088 GKAVTGHVLSIN 1099
G V G V+S+N
Sbjct: 559 GSKVKGRVISVN 570
Score = 51 (23.0 bits), Expect = 1.1e-80, Sum P(4) = 1.1e-80
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 622 NSAQQLPS-DASHIHPNSVVHGYVC-NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 679
N Q+ S DA I P +V +C +I + G + G ++G S DL
Sbjct: 324 NKITQISSIDA--IIPGQIVD-LLCESITKNGIAGKVFGLVSGVVNVSHLRTFSEEDLKH 380
Query: 680 TYYVGQSVRSNIL 692
+ +G S+R I+
Sbjct: 381 KFVIGSSIRCRII 393
Score = 51 (23.0 bits), Expect = 3.0e-26, Sum P(4) = 3.0e-26
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 944 AEITEI---KPLELRLKFGIGFHGRIHITEVNDDKSNV 978
A ITEI KP +L FG+G + + + N +K +
Sbjct: 1294 AHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQI 1331
Score = 50 (22.7 bits), Expect = 1.6e-81, Sum P(3) = 1.6e-81
Identities = 31/157 (19%), Positives = 59/157 (37%)
Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAI--VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 422
++ D+ ++ V +++ GA V PG + FE + PG F +G
Sbjct: 247 IYADEDLVKSTSIQCAVKSIEDHGATLDVGLPGFTGFIAK-KDFGNFEKLLPGAVF-LG- 303
Query: 423 ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 482
+ + I V + K+K+ +SS I I K+G + +
Sbjct: 304 ----NITKKSDRSIVVNTDFSDKKNKITQISSIDAIIPGQIVDLLCESITKNGIAGKVFG 359
Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
V G S L + + +G ++CRI++ +
Sbjct: 360 LVSGVVNVSHLRTFSEEDLKHKFVIGSSIRCRIIACL 396
Score = 46 (21.3 bits), Expect = 7.7e-82, Sum P(3) = 7.7e-82
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+K G + G++ A+ + F G+ L H+SE
Sbjct: 116 LKNGSSLLGQISAITKQDLCITFTDGISGYVNLTHISE 153
Score = 45 (20.9 bits), Expect = 1.2e-08, Sum P(4) = 1.2e-08
Identities = 51/222 (22%), Positives = 92/222 (41%)
Query: 1155 QIGPHLYGRVHFTELK-NICVS--DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
+IG + GRV + N+ V+ L ++ + +S Y+ + +K K + T++
Sbjct: 557 KIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATIQ- 615
Query: 1212 TFHVELSLRSSLDGMSS--TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
F + S G+S NS V P +HL L +IV+ + +V +
Sbjct: 616 VFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLR----LGQTVIVK--LLDVDAD-- 667
Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
R++ A +SN ++ +++ I +V GR + V V KT DS
Sbjct: 668 ----RRRIIATCKVSN-----EQAAQQKDTIENIVPGRTIIT------VHVIEKTKDSVI 712
Query: 1330 ASQSEINNLSNLHVGDIVIGQIK--RVESYGLFITIENTNLV 1369
++ ++VG + +I+ R + L I E T LV
Sbjct: 713 VEIPDVGLRGVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLV 754
Score = 43 (20.2 bits), Expect = 7.3e-95, Sum P(3) = 7.3e-95
Identities = 25/123 (20%), Positives = 49/123 (39%)
Query: 351 LATGILKASAFEGLVFTHSDVKP---GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 407
L + ++K + E L T+ DVK + + + ++ G V F G L +
Sbjct: 768 LKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAV 827
Query: 408 EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS-KLAILSSYAEATDRLIT 464
+ + K F + + +L K+++ ++ K VK K + S+ + D I
Sbjct: 828 DSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIK 887
Query: 465 HGW 467
W
Sbjct: 888 -SW 889
Score = 41 (19.5 bits), Expect = 2.6e-81, Sum P(3) = 2.6e-81
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 674 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
+ DL T+ G S N+ ++ E I L + S TDA+
Sbjct: 131 KQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAA 173
Score = 41 (19.5 bits), Expect = 3.1e-25, Sum P(4) = 3.1e-25
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 796 QAAILDVAKAERLVDLSLKTVFIDRFRE 823
Q + ++ KA L + +LKT+ FRE
Sbjct: 1485 QLQLSEIEKARELAERALKTI---NFRE 1509
Score = 40 (19.1 bits), Expect = 1.6e-79, Sum P(4) = 1.6e-79
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 804
E + G+V G + + +D +VV+ + SD IT A + G ++ + K
Sbjct: 293 EKLLPGAVFLGNITKKSDRSIVVN-TDFSDKKNKITQISSIDAIIP-GQIVDLLCESITK 350
Score = 40 (19.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 1463 SEDGGSLVLAQIESRASVPPLEVN 1486
S G L + + +ASVPPL ++
Sbjct: 522 SSSGIELKIFNGQFKASVPPLHIS 545
Score = 39 (18.8 bits), Expect = 1.2e-93, Sum P(4) = 1.2e-93
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 246 KKVNARILFVDPTSRAVGLTLNPYLLHNR 274
K ++ + LFV + +GL L Y + +R
Sbjct: 802 KSISDKGLFVAFNGKFIGLVLPSYAVDSR 830
Score = 39 (18.8 bits), Expect = 1.2e-93, Sum P(4) = 1.2e-93
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 317 ISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEG-----LATGILKASAFEGLVFTHS 369
+ D EE K + YK+ ++V+I+G ++ + I KAS E L S
Sbjct: 927 VFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLPITHKISKASVLE-LSMKPS 985
Query: 370 DVK 372
++K
Sbjct: 986 ELK 988
Score = 39 (18.8 bits), Expect = 5.5e-23, Sum P(4) = 5.5e-23
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 750 GSVIEGKVHESNDFGVVV 767
G +++G V ND G+ V
Sbjct: 1177 GEIVDGIVKNVNDKGIFV 1194
Score = 38 (18.4 bits), Expect = 2.9e-80, Sum P(4) = 2.9e-80
Identities = 27/149 (18%), Positives = 48/149 (32%)
Query: 468 ITKIEKHGCFVRF-YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
+ IE HG + G GF + + G P +++ +G + K S + +N
Sbjct: 263 VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKLLPGAVF-LGNITKKSDRSIV-----VN 316
Query: 527 LSFMMKPTRVSE-DXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEH 585
F K ++++ G G + HL E
Sbjct: 317 TDFSDKKNKITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLRTFSEE 376
Query: 586 ATVMKSVIKPGYEFDQLLVLDNESSNLLL 614
K VI + L+N+S + +L
Sbjct: 377 DLKHKFVIGSSIRCRIIACLENKSGDKVL 405
Score = 37 (18.1 bits), Expect = 1.0e-91, Sum P(3) = 1.0e-91
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 315 VTISDVAEEEVRKLEKKYKEGSCVRVRIL 343
V +S + L+ K+ GS +R RI+
Sbjct: 365 VNVSHLRTFSEEDLKHKFVIGSSIRCRII 393
Score = 37 (18.1 bits), Expect = 3.1e-21, Sum P(3) = 3.1e-21
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 1698 LPRHKHIKFISQTAILEFKNG 1718
+P H +IK IS + NG
Sbjct: 795 VPMHAYIKSISDKGLFVAFNG 815
>ASPGD|ASPL0000042752 [details] [associations]
symbol:rrp5 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005634 EMBL:BN001307 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
EMBL:AACD01000034 eggNOG:COG0539 KO:K14792 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 OMA:FYGNVRG RefSeq:XP_659751.1
ProteinModelPortal:Q5BBD3 STRING:Q5BBD3
EnsemblFungi:CADANIAT00008825 GeneID:2875769 KEGG:ani:AN2147.2
Uniprot:Q5BBD3
Length = 1780
Score = 835 (299.0 bits), Expect = 4.1e-102, Sum P(5) = 4.1e-102
Identities = 214/645 (33%), Positives = 353/645 (54%)
Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
D + DP Y + + V+ ++ + + R + LSLR S +SS S V P
Sbjct: 1168 DFSKADP-HAYHKNEVVRSCIIGVDKANR---KIHLSLRPS-KVLSS------SLPVQDP 1216
Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
+ +E + N I++G+V+ V+ G F+ + + A + +S+LSD Y++ + F +G
Sbjct: 1217 --EITSMEQVKVNDIIRGFVRQVSDGGLFVTVGHNIVAFIRISDLSDSYLKEWKDSFQVG 1274
Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
+LV GRV V+P +K+++++LK S + ++ I L +L G IV G++++VE +G FI
Sbjct: 1275 QLVKGRVTLVDPENKKLQMSLKDSVLDPSYKAPIT-LYDLKPGQIVTGKVRKVEQFGAFI 1333
Query: 1362 TIE-NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1420
I+ ++N+ GLCH +E+++ V++ T+Y G+ VK K+LKVD+++ +IS G+K+SYF +
Sbjct: 1334 VIDGSSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKVDRDQGKISFGLKASYFND 1393
Query: 1421 DADNLQMXXXXXXXXXXXXXXXYNRSSLLEN--------SSVAVQDMDMESEDGGSLVLA 1472
DA++ + + L E+ S V++ MD+E E G
Sbjct: 1394 DAED-ESSGNEDSDSDGVSLDSFGGVELEESGESDEDDDSDVSMGGMDLEDESGSEESEE 1452
Query: 1473 QIESRASV--PPLEVNLDD-EQPDMD-NGISQNQGHTDEAKTIDXXXXXXXXXXXXXXXX 1528
+ E A V P ++ D NG +Q+ DEA D
Sbjct: 1453 EEEGDAVVDEPTNKIRKGGLGAVGFDWNGNTQDD--EDEAMQSDSDDEDKGIQKKRKHRQ 1510
Query: 1529 XXXXXXXXXXXXXDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1588
+ P++ ++ERL+ PNSS +W+KYMAF L + +VEKAR IAERAL
Sbjct: 1511 PEILVDRTGELDANGPQSVADYERLLLGEPNSSLLWLKYMAFQLELGEVEKAREIAERAL 1570
Query: 1589 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1648
+TI I ++ EKLNIWVA NLEN YG+ ++ + +VF+RA QY D ++++ L +Y ++
Sbjct: 1571 RTITIGQDTEKLNIWVAMLNLENTYGD--DDTLEEVFKRACQYNDTQEIYERLTSIYIQS 1628
Query: 1649 EQNKLADELLYKMIKK--FKHSCKVWXXXXXXXXXXXX--EGVQAVVQRALLSLPRHKHI 1704
+N+ ADEL +KK F +S K + + + ++ RAL SLP++ H+
Sbjct: 1629 GKNEKADELFKTALKKKVFPNSPKFFINYATFLYDTMAAPDRGRGLLSRALQSLPKNTHV 1688
Query: 1705 KFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
+ S+ A LEF+ NG +RGR++FEG+LS +PKR DLW++ LD EI+ GDV+ R F+
Sbjct: 1689 ETTSKFAQLEFRSPNGDVERGRTVFEGLLSSFPKRVDLWNVLLDLEIKNGDVEQARFFFK 1748
Query: 1763 RAIXXXXXXXXXXXXXXXYLEYEKSVGEEERIEYVKQKAMEYVES 1807
+ +L++E+ G+E+ +E +K KA EYV+S
Sbjct: 1749 K-----------------WLDFEEKKGDEKTVEEIKAKAAEYVKS 1776
Score = 196 (74.1 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 43/172 (25%), Positives = 95/172 (55%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
+DLS M++ V VT K + L+ L V L N++D + ++ + ++V +
Sbjct: 1128 DDLSVGMVLPTRVTRVTDKQVIMQLNNTLVGAVDLINMADDFSKADPHAYHKNEVVRSCI 1187
Query: 1309 LSVEPLSKRVEVTLKTSDSRTAS----QSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
+ V+ ++++ ++L+ S ++S EI ++ + V DI+ G +++V GLF+T+
Sbjct: 1188 IGVDKANRKIHLSLRPSKVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVTVG 1247
Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ N+V +S+LS+ ++ + ++ G+ VK ++ VD E +++ + +K S
Sbjct: 1248 H-NIVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDS 1298
Score = 191 (72.3 bits), Expect = 4.1e-102, Sum P(5) = 4.1e-102
Identities = 59/225 (26%), Positives = 106/225 (47%)
Query: 314 YVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 370
+V +S +A+ +V + +K G+ R++G+ ++ L + + D
Sbjct: 483 FVHVSRLADGQVETISSDHGPFKVGTTHEARVVGYSAIDNLYSLSFERKVINQPFLRLED 542
Query: 371 VKPGMVVK---GKVIAVDS--FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
V G VVK KV+ +S G IV G+ P H ++ + P KKF+ G +
Sbjct: 543 VTLGAVVKVTITKVLVGESGVTGLIVSLTDGITGFIPSVHFADTRLQFPEKKFREGLSIT 602
Query: 426 FRVLGVK-SKR-ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
RVL V KR + +T KK+L+ ++ A+ Y + + G I I +G V+FY
Sbjct: 603 ARVLSVNLEKREVRLTLKKSLLNTEAAVWKDYRDILPGAQSPGTIINILPNGAVVQFYGN 662
Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
V+G+ SE+ +PS + +GQVV ++ + ++++S
Sbjct: 663 VRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHALNVDASQGKLSVS 707
Score = 182 (69.1 bits), Expect = 7.1e-100, Sum P(4) = 7.1e-100
Identities = 87/431 (20%), Positives = 166/431 (38%)
Query: 45 ILDNEIEANEDNL-LPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWXXXXXXXXXXXX 100
+L+ + +++E+ L F++GQ + V+ + + D K++I
Sbjct: 198 MLEEDEDSDEEEFDLHDYFYLGQYLRTYVVSVGNKSADASSKSKKRIELSIDPRSANTGL 257
Query: 101 XXETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPGLLLQG 157
+ + A V S+EDHG ++ G+ GF+ + + +K G +
Sbjct: 258 QKTDLVVNAAVQASVVSVEDHGLVMDLGIEGTDVRGFMSSKEIDPRTDYSTIKEGSVFLC 317
Query: 158 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS--IDLLVPGMMVSTRVQSILENGVMLS 215
+V + V+ LS++ + ++ I+ VPG+ + + G++
Sbjct: 318 MVTGQNANGNVIKLSANLQSSGSIKKSHFLSVAPTINSFVPGVAAEILLTDVSSTGMIGK 377
Query: 216 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTL----NPY 269
+ TVD+ H T+ Y+ K+ RI P S +G ++ +
Sbjct: 378 IMGMLDTTVDLVHSGGATGKTDLTKKYHNGAKIKGRISCTFPGSEPYKIGFSMLDHVQKF 437
Query: 270 LLHNRAPPSH---VKVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVR 326
P S + + ++ I ST +V +S +A+ +V
Sbjct: 438 SAEGHGPNSSDDAPAISAVIPEATIVNVDPGLGVYVKIGST--KHMGFVHVSRLADGQVE 495
Query: 327 KLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK---GK 380
+ +K G+ R++G+ ++ L + + DV G VVK K
Sbjct: 496 TISSDHGPFKVGTTHEARVVGYSAIDNLYSLSFERKVINQPFLRLEDVTLGAVVKVTITK 555
Query: 381 VIAVDS--FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITV 438
V+ +S G IV G+ P H ++ + P KKF+ G + RVL V ++ V
Sbjct: 556 VLVGESGVTGLIVSLTDGITGFIPSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREV 615
Query: 439 THKKTLVKSKL 449
+ TL KS L
Sbjct: 616 --RLTLKKSLL 624
Score = 176 (67.0 bits), Expect = 6.7e-29, Sum P(3) = 6.7e-29
Identities = 128/597 (21%), Positives = 250/597 (41%)
Query: 847 QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ--KFPQKQFLNGQSVIATVMALP 904
Q+ I+ I+ N V+ Y + G+ SVS+ + K P + F GQ + V AL
Sbjct: 642 QSPGTIINILP-NGAVVQF--YGNVRGWLSVSEMSEAYIKDPSQHFKLGQ--VVNVHALN 696
Query: 905 SSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKP--LELRLKFGIGF 962
++ G+L + + G V + E + LRL+ G
Sbjct: 697 VDASQGKLSVSCR---DQSLLADSYRTAFKTIQPGQSVTGTVFEKSDDYVLLRLEDLGGL 753
Query: 963 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1022
R+ + +V D ++ + S ++GQ + ++ ++ L ++ + S+
Sbjct: 754 VARLGVGQVADGSASKRSSTLSKIRVGQKLNELVVLDVHRAHR----LIHVTNRASLKKA 809
Query: 1023 SEIGSK-LLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1081
++ G+ FE D+ G VTG++ + + L + E S EF
Sbjct: 810 TKEGNMPSTFE--DLREGAEVTGFIRNITPTGLFVQFLGGLIGLVPRRLVGSEDSNKSEF 867
Query: 1082 QR-RFHIGKAVTGHVLSINKEKKLLRLV------LRPFQDGI--SDKTVDISNDNM---- 1128
+ F + A T H L + + +L + P ++ S K + D
Sbjct: 868 GKANFQVVSA-TVHSLDTDFRRFILSMDPAEATHAGPKKESTKKSAKETAAAGDESLANP 926
Query: 1129 --QTFIHEGDIVGGRISKI-LSGVGG--LVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
+T + DI GR+ K ++ V G + V++ ++ GR+ +E+ + + +S D+
Sbjct: 927 VDETLKAKSDITVGRVLKCKINSVKGTQINVKLADNVQGRIDVSEVFDSW--EDIS--DK 982
Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS--STNSSDLSTDVDTP 1241
Q PL + GQ + KVL + R ++ +S R+ + S + D TP
Sbjct: 983 KQ--PLKHFRPGQVITAKVLGL-HDARSYTYLPISHRTGKFNVYELSMKPKFVKADNATP 1039
Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD--GYVESPEKEFP 1299
+++++ S + G+V NV++ ++ LS + ++ + SD + EK++P
Sbjct: 1040 -LTIDQVQAGSSSF---GFVNNVSNDFFWVSLSPNVRGRLRFIDASDDISLLADIEKQYP 1095
Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
IG + RV V+ ++++ + +SE +L VG ++ ++ RV +
Sbjct: 1096 IGCALKFRVTGVDAEKGHIDLSAR-------ERSESLTFDDLSVGMVLPTRVTRVTDKQV 1148
Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ + NT LVG + +++D Y E V+ I+ VDK R+I L ++ S
Sbjct: 1149 IMQLNNT-LVGAVDLINMADDFSKADPHAYHKNEVVRSCIIGVDKANRKIHLSLRPS 1204
Score = 161 (61.7 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 59/257 (22%), Positives = 120/257 (46%)
Query: 187 KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 246
+ ++ D L GM++ TRV + + V++ G VD+ ++ + F + + Y++++
Sbjct: 1123 ESLTFDDLSVGMVLPTRVTRVTDKQVIMQLNNTLVGAVDLINMADDFSKAD-PHAYHKNE 1181
Query: 247 KVNARILFVDPTSRAVGLTLNPY-LLHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXIP 305
V + I+ VD +R + L+L P +L + P ++ + +Q K
Sbjct: 1182 VVRSCIIGVDKANRKIHLSLRPSKVLSSSLPVQDPEITSM-EQVKVNDIIRGFVRQVSDG 1240
Query: 306 STPVSTP----AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE-GLATGIL 356
V+ A++ ISD+++ +++ + ++ G V+ R+ + L+ L +L
Sbjct: 1241 GLFVTVGHNIVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVL 1300
Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKALCPLPHMSEFEIVKP 414
S ++ + T D+KPG +V GKV V+ FGA + G V LC M++ +
Sbjct: 1301 DPS-YKAPI-TLYDLKPGQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDA 1358
Query: 415 GKKFKVGAELVFRVLGV 431
++ G + +VL V
Sbjct: 1359 RTLYEEGDAVKAKVLKV 1375
Score = 150 (57.9 bits), Expect = 8.3e-28, Sum P(4) = 8.3e-28
Identities = 73/314 (23%), Positives = 139/314 (44%)
Query: 938 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
VG ++ +T + ++ ++ G + + + DD S + + + V + II
Sbjct: 1132 VGMVLPTRVTRVTDKQVIMQLNNTLVGAVDLINMADDFSKADPHAYHK---NEVVRSCII 1188
Query: 998 AKSNKPDMKKSFLWELSIKPSMLTVSEI---GSKLLFEECDVSIGQRVTGYVYKVDNEWA 1054
+K + K LS++PS + S + ++ E V + + G+V +V +
Sbjct: 1189 GV-DKANRKI----HLSLRPSKVLSSSLPVQDPEITSME-QVKVNDIIRGFVRQVSDGGL 1242
Query: 1055 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1114
+T+ ++ A FI S S L+E++ F +G+ V G V ++ E K L++ L+
Sbjct: 1243 FVTVGHNIVA--FIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLK---- 1296
Query: 1115 GISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1172
D +D S T + G IV G++ K+ +V+ ++ G H TE+ +
Sbjct: 1297 ---DSVLDPSYKAPITLYDLKPGQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADT 1353
Query: 1173 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1232
V D + L Y+EG VK KVL++ R +G + L++S + + S
Sbjct: 1354 RVEDART---------L--YEEGDAVKAKVLKVDRD-QGK--ISFGLKASYFNDDAEDES 1399
Query: 1233 DLSTDVDTPGKHLE 1246
+ D D+ G L+
Sbjct: 1400 SGNEDSDSDGVSLD 1413
Score = 140 (54.3 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 60/305 (19%), Positives = 129/305 (42%)
Query: 416 KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 475
K++ +G L FRV GV +++ H + + L+ + + + ++ +T++
Sbjct: 1092 KQYPIGCALKFRVTGVDAEK---GHIDLSARERSESLT-FDDLSVGMVLPTRVTRVTDKQ 1147
Query: 476 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
++ N + G + D YH +VV+ I+ A+R+I+LS ++P++
Sbjct: 1148 VIMQLNNTLVGAVDLINMADDFSKADPHAYHKNEVVRSCIIGVDKANRKIHLS--LRPSK 1205
Query: 536 VSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPT--EHLADHLEHATVMKSVI 593
V + + G T ++ + + + S +
Sbjct: 1206 VLSSSLPVQDPEITSMEQVKVNDIIRGF-VRQVSDGGLFVTVGHNIVAFIRISDLSDSYL 1264
Query: 594 KP---GYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 645
K ++ QL+ ++D E+ L +S K S+++ + + P + P +V G V
Sbjct: 1265 KEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVLDPSYKAPITLYDLKPGQIVTGKVR 1324
Query: 646 NIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703
+ + G F+ G ++G R++ D + D Y G +V++ +L V+ + G+I+
Sbjct: 1325 KVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKVDRDQGKISF 1384
Query: 704 SLKQS 708
LK S
Sbjct: 1385 GLKAS 1389
Score = 133 (51.9 bits), Expect = 5.8e-91, Sum P(5) = 5.8e-91
Identities = 83/361 (22%), Positives = 146/361 (40%)
Query: 197 GMMVSTRVQSIL--ENGV---MLSFLTYFTGTVDIFHLQNT---FPTTNWKNDYNQHKKV 248
G +V + +L E+GV ++S TG + H +T FP + + + +
Sbjct: 546 GAVVKVTITKVLVGESGVTGLIVSLTDGITGFIPSVHFADTRLQFP----EKKFREGLSI 601
Query: 249 NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXIPSTP 308
AR+L V+ R V LTL LL+ A DI ++ +
Sbjct: 602 TARVLSVNLEKREVRLTLKKSLLNTEAAVWK-DYRDILPGAQSPGTIINILPNGAVVQFY 660
Query: 309 VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG-LATGILKASAFEGLVFT 367
+ ++++S+++E ++ + +K G V V L +G L+ S T
Sbjct: 661 GNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHALNVDASQGKLSVSCRDQSLLADSYRT 720
Query: 368 -HSDVKPGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGK---KFKVG 421
++PG V G V +++ GG+ A + +++ K K +VG
Sbjct: 721 AFKTIQPGQSVTGTVFEKSDDYVLLRLEDLGGLVARLGVGQVADGSASKRSSTLSKIRVG 780
Query: 422 AEL-VFRVLGV-KSKR-ITVTHKKTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGC 476
+L VL V ++ R I VT++ +L K+ + S++ + + G+I I G
Sbjct: 781 QKLNELVVLDVHRAHRLIHVTNRASLKKATKEGNMPSTFEDLREGAEVTGFIRNITPTGL 840
Query: 477 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 536
FV+F G+ G PR +G + + QVV + S RR LS M P
Sbjct: 841 FVQFLGGLIGLVPRRLVGSEDSNKSEFGKANFQVVSATVHSLDTDFRRFILS--MDPAEA 898
Query: 537 S 537
+
Sbjct: 899 T 899
Score = 129 (50.5 bits), Expect = 1.1e-88, Sum P(5) = 1.1e-88
Identities = 64/248 (25%), Positives = 109/248 (43%)
Query: 943 QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1000
+A I + P L + +K G H G +H++ + D + + + FK+G T AR++ S
Sbjct: 459 EATIVNVDPGLGVYVKIGSTKHMGFVHVSRLADGQVETISSDHGPFKVGTTHEARVVGYS 518
Query: 1001 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV---DNEWALLT 1057
+ L+ LS + + I L E DV++G V + KV ++ L
Sbjct: 519 AIDN-----LYSLSFERKV-----INQPFLRLE-DVTLGAVVKVTITKVLVGESGVTGLI 567
Query: 1058 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS 1117
+S FI + + LQ +++F G ++T VLS+N EK+ +RL L+ +
Sbjct: 568 VSLTDGITGFIPSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKK---SLL 624
Query: 1118 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP 1177
+ + D I G G I IL G VVQ ++ G + +E+ + DP
Sbjct: 625 NTEAAVWKDYRD--ILPGAQSPGTIINILPN--GAVVQFYGNVRGWLSVSEMSEAYIKDP 680
Query: 1178 LSGYDEGQ 1185
+ GQ
Sbjct: 681 SQHFKLGQ 688
Score = 124 (48.7 bits), Expect = 7.1e-100, Sum P(4) = 7.1e-100
Identities = 35/136 (25%), Positives = 67/136 (49%)
Query: 572 GTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD 630
G IP+ H AD + + G ++L ++ E + L+ K SL+N+ + D
Sbjct: 576 GFIPSVHFAD--TRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKKSLLNTEAAVWKD 633
Query: 631 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 690
I P + G + NI+ G V+F G + G+ S+ + D S+ + +GQ V +
Sbjct: 634 YRDILPGAQSPGTIINILPNGAVVQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVH 693
Query: 691 ILDVNSETGRITLSLK 706
L+V++ G++++S +
Sbjct: 694 ALNVDASQGKLSVSCR 709
Score = 120 (47.3 bits), Expect = 4.1e-102, Sum P(5) = 4.1e-102
Identities = 50/199 (25%), Positives = 94/199 (47%)
Query: 591 SVIKPGYEFDQLLVLDNESSNLLLSA--KYSLINSAQQ--LPSDASHIHPNSVVHGYVCN 646
S I+ G + ++L+VLD ++ L+ + SL + ++ +PS + + V G++ N
Sbjct: 775 SKIRVGQKLNELVVLDVHRAHRLIHVTNRASLKKATKEGNMPSTFEDLREGAEVTGFIRN 834
Query: 647 IIETGCFVRFLGRLTGFAPRSK--AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
I TG FV+FLG L G PR + D +++ K + Q V + + ++++ R LS
Sbjct: 835 ITPTGLFVQFLGGLIGLVPRRLVGSEDSNKSEFGKANF--QVVSATVHSLDTDFRRFILS 892
Query: 705 LKQSCCSSTDASFMQEHFL--LEEKIAMLQSSKHNGSE--LKWVEGFIIGSVIEGKVHES 760
+ + +T A +E +E A S N + LK +G V++ K++
Sbjct: 893 MDPA--EATHAGPKKESTKKSAKETAAAGDESLANPVDETLKAKSDITVGRVLKCKINSV 950
Query: 761 NDFGVVVSFEEHSDVYGFI 779
G ++ + +V G I
Sbjct: 951 K--GTQINVKLADNVQGRI 967
Score = 99 (39.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 35/175 (20%), Positives = 77/175 (44%)
Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
D+ P G + N+ G + + + +S +S+ Y++ P + F +G++V L
Sbjct: 636 DILPGAQSPGTIINILPNGAVVQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHAL 695
Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI-KRVESYGLFITIENTNL 1368
+V+ ++ V+ + D + S + G V G + ++ + Y L + L
Sbjct: 696 NVDASQGKLSVSCR--DQSLLADSYRTAFKTIQPGQSVTGTVFEKSDDYVLLRLEDLGGL 753
Query: 1369 VGLCHVSELSEDHVDN-IETI--YRAGEKV-KVKILKVDKEKRRISLGMKSSYFK 1419
V V ++++ T+ R G+K+ ++ +L V + R I + ++S K
Sbjct: 754 VARLGVGQVADGSASKRSSTLSKIRVGQKLNELVVLDVHRAHRLIHVTNRASLKK 808
Score = 90 (36.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 111/563 (19%), Positives = 222/563 (39%)
Query: 884 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQ 943
+FP+K+F G S+ A V+++ RL L K++ G+
Sbjct: 589 QFPEKKFREGLSITARVLSVNLEKREVRLTLK-KSLLNTEAAVWKDYRDILP---GAQSP 644
Query: 944 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 1003
I I P ++F G + ++E+++ +++ +FK+GQ V +
Sbjct: 645 GTIINILPNGAVVQFYGNVRGWLSVSEMSEA---YIKDPSQHFKLGQVVNVHAL----NV 697
Query: 1004 DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR--H 1061
D + L +S + L + F+ + GQ VTG V++ +++ LL +
Sbjct: 698 DASQGKL-SVSCRDQSLLADSY--RTAFKT--IQPGQSVTGTVFEKSDDYVLLRLEDLGG 752
Query: 1062 LKAQLFILDSAY-EPSELQEFQRRFHIGKAVTGHV-LSINKEKKLLRLVLRPF-----QD 1114
L A+L + A S+ + +G+ + V L +++ +L+ + R ++
Sbjct: 753 LVARLGVGQVADGSASKRSSTLSKIRVGQKLNELVVLDVHRAHRLIHVTNRASLKKATKE 812
Query: 1115 GISDKTVDISNDNMQTFIHEGDIVG-GRISKILSGVGGLVVQ--IGPHLYGRVHFTELKN 1171
G T + + + +I G + L G+ GLV + +G + F +
Sbjct: 813 GNMPSTFEDLREGAEVTGFIRNITPTGLFVQFLGGLIGLVPRRLVGSEDSNKSEFGKANF 872
Query: 1172 ICVSDPLSGYDEGQFDPLSGYDEGQFVKC--KVLEISRTVRGTFHV-ELSLRSSLDGMSS 1228
VS + D + D + K ++ + T + SL + +D
Sbjct: 873 QVVSATVHSLDTDFRRFILSMDPAEATHAGPKKESTKKSAKETAAAGDESLANPVDETLK 932
Query: 1229 TNSSDLSTDVDTPGKHLE-KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1287
S D+ T G+ L+ KI + I NV + I +S D+ ++S
Sbjct: 933 AKS-----DI-TVGRVLKCKINSVKGTQINVKLADNVQGR---IDVSEVFDS---WEDIS 980
Query: 1288 DGYVESPEKEFPIGKLVAGRVLSVE--------PLSKRV------EVTLKTSDSRTASQS 1333
D + P K F G+++ +VL + P+S R E+++K + + +
Sbjct: 981 DK--KQPLKHFRPGQVITAKVLGLHDARSYTYLPISHRTGKFNVYELSMKPKFVKADNAT 1038
Query: 1334 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRA 1391
+ + + G G + V + ++++ + N+ G + S+D + +IE Y
Sbjct: 1039 PLT-IDQVQAGSSSFGFVNNVSNDFFWVSL-SPNVRGRLRFIDASDDISLLADIEKQYPI 1096
Query: 1392 GEKVKVKILKVDKEKRRISLGMK 1414
G +K ++ VD EK I L +
Sbjct: 1097 GCALKFRVTGVDAEKGHIDLSAR 1119
Score = 88 (36.0 bits), Expect = 4.0e-13, Sum P(4) = 4.0e-13
Identities = 39/164 (23%), Positives = 71/164 (43%)
Query: 602 LLVLDNESSNLLLSAKYSLINSAQ---QLPSDAS--HIHPNSVVHGYVCNIIETGCFVRF 656
++ +D + + LS + S + S+ Q P S + N ++ G+V + + G FV
Sbjct: 1187 IIGVDKANRKIHLSLRPSKVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVTV 1246
Query: 657 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
+ F S D + ++ VGQ V+ + V+ E ++ +SLK S D S
Sbjct: 1247 GHNIVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVL---DPS 1303
Query: 717 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 760
+ L + K + + K ++ VE F VI+G + S
Sbjct: 1304 YKAPITLYDLKPGQIVTGK-----VRKVEQFGAFIVIDGSSNVS 1342
Score = 81 (33.6 bits), Expect = 2.9e-83, Sum P(5) = 2.9e-83
Identities = 62/286 (21%), Positives = 112/286 (39%)
Query: 133 TGFLPRNNLAENS----GIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK--CVTKDL 186
TGF+P + A+ + GL + V S++ ++ V L+ ++ V KD
Sbjct: 575 TGFIPSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKKSLLNTEAAVWKDY 634
Query: 187 KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF---PTTNWK--ND 241
+ D+L PG + +IL NG ++ F G + + + + P+ ++K
Sbjct: 635 R----DIL-PGAQSPGTIINILPNGAVVQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQV 689
Query: 242 YNQHK-KVNARILFVDPTSRAVGLTLNPY-LLHNRAPPSHVKVGDIYDQSKXXXXXXXXX 299
N H V+A + + R L + Y P G ++++S
Sbjct: 690 VNVHALNVDASQGKLSVSCRDQSLLADSYRTAFKTIQPGQSVTGTVFEKSDDYVLLRLED 749
Query: 300 XXXXIPSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV-RILGFRHLEGLATGILK 357
+ V A + S + + ++ +K E + V R H+ A+ LK
Sbjct: 750 LGGLVARLGVGQVADGSASKRSSTLSKIRVGQKLNELVVLDVHRAHRLIHVTNRAS--LK 807
Query: 358 ASAFEG-LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 402
+ EG + T D++ G V G + + G VQF GG+ L P
Sbjct: 808 KATKEGNMPSTFEDLREGAEVTGFIRNITPTGLFVQFLGGLIGLVP 853
Score = 81 (33.6 bits), Expect = 3.7e-83, Sum P(5) = 3.7e-83
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 650 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
TG V +TGF P D + K + G S+ + +L VN E + L+LK+S
Sbjct: 564 TGLIVSLTDGITGFIPSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKKSL 623
Query: 710 CSSTDASFMQEH 721
+ T+A+ +++
Sbjct: 624 LN-TEAAVWKDY 634
Score = 71 (30.1 bits), Expect = 5.2e-97, Sum P(5) = 5.2e-97
Identities = 25/102 (24%), Positives = 42/102 (41%)
Query: 614 LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-- 671
LS K + + P + S G+V N+ +V + G A D
Sbjct: 1025 LSMKPKFVKADNATPLTIDQVQAGSSSFGFVNNVSNDFFWVSLSPNVRGRLRFIDASDDI 1084
Query: 672 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
AD+ K Y +G +++ + V++E G I LS ++ S T
Sbjct: 1085 SLLADIEKQYPIGCALKFRVTGVDAEKGHIDLSARERSESLT 1126
Score = 71 (30.1 bits), Expect = 4.4e-18, Sum P(3) = 4.4e-18
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 750 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV 802
G ++ GKV + FG + + S+V G ++A VE G ++A +L V
Sbjct: 1316 GQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKV 1375
Query: 803 AKAERLVDLSLKTVFID 819
+ + + LK + +
Sbjct: 1376 DRDQGKISFGLKASYFN 1392
Score = 61 (26.5 bits), Expect = 4.1e-102, Sum P(5) = 4.1e-102
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 186 LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 232
++G+S LVPG ++ +V SI + + +S TG V + + T
Sbjct: 144 IEGLSFKRLVPGALILGQVSSINAHNIGISLPNNLTGYVPLTSVSKT 190
Score = 61 (26.5 bits), Expect = 5.1e-82, Sum P(5) = 5.1e-82
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-AENSGIDV--KPGL-LLQGV 158
E ++EG +T ++++I G + F L G +PR + +E+S K ++
Sbjct: 820 EDLREGAEVTGFIRNITPTGLFVQF-LGGLIGLVPRRLVGSEDSNKSEFGKANFQVVSAT 878
Query: 159 VRSIDRTRKVVYLSSDP 175
V S+D + LS DP
Sbjct: 879 VHSLDTDFRRFILSMDP 895
Score = 60 (26.2 bits), Expect = 1.1e-88, Sum P(5) = 1.1e-88
Identities = 32/111 (28%), Positives = 48/111 (43%)
Query: 591 SVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQLPSDASHIHP--NSVVHGYVCNI 647
S IK G F ++ N + N++ LSA +L +S S + P NS V G I
Sbjct: 307 STIKEGSVFLCMVTGQNANGNVIKLSA--NLQSSGSIKKSHFLSVAPTINSFVPGVAAEI 364
Query: 648 I-----ETGCFVRFLGRL--TGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
+ TG + +G L T S G + DL+K Y+ G ++ I
Sbjct: 365 LLTDVSSTGMIGKIMGMLDTTVDLVHSGGATG-KTDLTKKYHNGAKIKGRI 414
Score = 55 (24.4 bits), Expect = 3.3e-15, Sum P(4) = 3.3e-15
Identities = 24/120 (20%), Positives = 50/120 (41%)
Query: 707 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 766
+SC D + + H L + S E+ +E + +I G V + +D G+
Sbjct: 1184 RSCIIGVDKANRKIHLSLRPSKVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLF 1243
Query: 767 VSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFID 819
V+ H+ + FI L+ + ++ G +++ + V + + +SLK +D
Sbjct: 1244 VTVG-HN-IVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVLD 1301
Score = 54 (24.1 bits), Expect = 6.0e-88, Sum P(5) = 6.0e-88
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
K EGL F + PG ++ G+V ++++ + P + PL +S+
Sbjct: 140 KGVRIEGLSFKR--LVPGALILGQVSSINAHNIGISLPNNLTGYVPLTSVSK 189
Score = 52 (23.4 bits), Expect = 4.2e-87, Sum P(3) = 4.2e-87
Identities = 32/167 (19%), Positives = 71/167 (42%)
Query: 636 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
P +++ G V +I + LTG+ P + + + K + D++
Sbjct: 154 PGALILGQVSSINAHNIGISLPNNLTGYVPLTSVSKTLESKIEKMLEEDEDSDEEEFDLH 213
Query: 696 SE--TGRITLSLKQSCCS-STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 752
G+ + S + S DAS + + ++++ S + G L+ + ++ +
Sbjct: 214 DYFYLGQYLRTYVVSVGNKSADASSKSKKRI---ELSIDPRSANTG--LQKTD-LVVNAA 267
Query: 753 IEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAG----ATVESGSV 794
++ V D G+V+ E +DV GF++ ++ +T++ GSV
Sbjct: 268 VQASVVSVEDHGLVMDLGIEGTDVRGFMSSKEIDPRTDYSTIKEGSV 314
Score = 48 (22.0 bits), Expect = 1.2e-87, Sum P(5) = 1.2e-87
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 505 YHVGQVVKCRIMSSIPASRRINLSFMM 531
YH G +K RI + P S + F M
Sbjct: 404 YHNGAKIKGRISCTFPGSEPYKIGFSM 430
Score = 47 (21.6 bits), Expect = 5.1e-82, Sum P(5) = 5.1e-82
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE-FEIV----KPGKKFKVGAE 423
SD+ G V+K K+ +V V+ V+ + + + +E + +P K F+ G
Sbjct: 935 SDITVGRVLKCKINSVKGTQINVKLADNVQGRIDVSEVFDSWEDISDKKQPLKHFRPGQV 994
Query: 424 LVFRVLGVKSKR 435
+ +VLG+ R
Sbjct: 995 ITAKVLGLHDAR 1006
Score = 44 (20.5 bits), Expect = 4.1e-102, Sum P(5) = 4.1e-102
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 794 VIQAAILDVAKAERLVDLSLK 814
V+++ I+ V KA R + LSL+
Sbjct: 1182 VVRSCIIGVDKANRKIHLSLR 1202
Score = 41 (19.5 bits), Expect = 8.1e-79, Sum P(3) = 8.1e-79
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 970 EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP---DMKKSFLWELSIKP 1017
E ++D +L F +GQ + +++ NK K ELSI P
Sbjct: 200 EEDEDSDEEEFDLHDYFYLGQYLRTYVVSVGNKSADASSKSKKRIELSIDP 250
Score = 39 (18.8 bits), Expect = 8.1e-100, Sum P(5) = 8.1e-100
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 306 STPVSTPAYVTISDVAEEEVRKLEKKYKE 334
S P + YV ++ V++ K+EK +E
Sbjct: 173 SLPNNLTGYVPLTSVSKTLESKIEKMLEE 201
Score = 39 (18.8 bits), Expect = 8.9e-94, Sum P(5) = 8.9e-94
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 495 LDPGCEPSSMYHVGQVVKCRIMS 517
+D + S VG+V+KC+I S
Sbjct: 927 VDETLKAKSDITVGRVLKCKINS 949
Score = 37 (18.1 bits), Expect = 1.1e-88, Sum P(5) = 1.1e-88
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
R EL +DP + + VV + +S+
Sbjct: 243 RIELSIDPRSANTGLQKTDLVVNAAVQASV 272
Score = 37 (18.1 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 936 YDVGSLVQAEITEIKPLELRLKFGI 960
Y+ G V+A++ ++ + ++ FG+
Sbjct: 1362 YEEGDAVKAKVLKVDRDQGKISFGL 1386
>POMBASE|SPCC1183.07 [details] [associations]
symbol:SPCC1183.07 "U3 snoRNP-associated protein Rrp5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005730
"nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0030515 "snoRNA binding" evidence=ISO]
[GO:0032040 "small-subunit processome" evidence=ISO] [GO:0042134
"rRNA primary transcript binding" evidence=ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 SMART:SM00386
PomBase:SPCC1183.07 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0030515 GO:GO:0006397
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006364 GO:GO:0042134 GO:GO:0032040
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 eggNOG:COG0539
KO:K14792 OMA:LHLADIY PIR:T40847 RefSeq:NP_587890.1
ProteinModelPortal:O74835 STRING:O74835 EnsemblFungi:SPCC1183.07.1
GeneID:2538897 KEGG:spo:SPCC1183.07 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 NextBio:20800076 Uniprot:O74835
Length = 1690
Score = 900 (321.9 bits), Expect = 2.0e-87, Sum P(2) = 2.0e-87
Identities = 252/801 (31%), Positives = 402/801 (50%)
Query: 1031 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS--ELQEFQRR---F 1085
F + D I RV G ++ N L IS + + F L+ + PS ++ F + F
Sbjct: 915 FHKGD-KIRVRVLG-IHDSRNH-KFLPISHRVSPKQF-LELSVRPSILNMEPFSMKEPQF 970
Query: 1086 HIGKAVTGHVLSINKEKKLLRLVLRPFQDG---ISDKTVDISNDN-MQTFIHEGD----- 1136
G VTG V +++KE + + L P +G I D T D+ N +Q G
Sbjct: 971 KKGDEVTGFVNNVSKE--CVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKAIKCY 1028
Query: 1137 IVGGRISKILSGVGGL--VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
+V S LS +G L + P T + L G+ G+ + +D+
Sbjct: 1029 VVNAEDSITLSAIGPLQGFENLTPGSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDMFDD 1088
Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
+ + V G + + + + +S+ NS S V+ K + ++DL
Sbjct: 1089 YDILPETKFTRNNLV-GVCVLSVDVPNRKVALSARNSRTQSQPVEIKDKEINSVDDLKIG 1147
Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
I +G+V NV ++G F+ + L A+V + L D +++ + F + +LV G ++ ++
Sbjct: 1148 DICRGFVCNVANQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDND 1207
Query: 1315 SKRVEVTLKTSDSRTASQSEINN-LSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLC 1372
SKR+E++LK S+ SEI +++ VG + G + +V YG+ I I+ T N+VGLC
Sbjct: 1208 SKRIEMSLK--QSKIKDSSEITKTFADIAVGSNLDGTVVKVGDYGVLIRIDGTDNIVGLC 1265
Query: 1373 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMXXXXX 1432
H SE+++ V NI +Y +G+KV+ +L VD EKRRI+LG+KSSYF +D+D + M
Sbjct: 1266 HKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLKSSYFDSDSD-ISMSDNEE 1324
Query: 1433 XXXXXXXXXXYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQP 1492
++S E S V +D D++SE+ +L A E ++E+P
Sbjct: 1325 DVEMRSE----DQSDTSE-SEVGSKD-DVQSEEVENLESAGDED-----------EEEEP 1367
Query: 1493 D--MDNGISQNQGHTDEAKTIDXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXDAPRTPD 1548
NG G T K D + P T
Sbjct: 1368 SALQANGFDWTDGSTVFDKLADDTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEIPSTAA 1427
Query: 1549 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1608
+FER + SSPNSS +WI YMA+ L++ ++++AR + +RAL TIN REE+EKLN+W+A N
Sbjct: 1428 DFERQLLSSPNSSLLWISYMAYHLNLNELQEAREVGKRALSTINYREEDEKLNVWMALLN 1487
Query: 1609 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1668
LE YG E+++ +VF+ A YCD V+ L G+ + + LADE + M+K FK
Sbjct: 1488 LEVAYGT--EDSLKEVFKEACAYCDALIVYEKLCGILIKGGKVDLADEYMQLMLKNFKQV 1545
Query: 1669 CKVWXXXXXXXXXXX-XEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1727
VW E +++R+L SLP+ +H+ I + AILEFKNG +RGR++F
Sbjct: 1546 PSVWIQYATFLLNNDKAEKAHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPERGRTIF 1605
Query: 1728 EGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXYLEYEKS 1787
EG+LS YPKR DLW++ +D E++ D ++R LF+R + +L YEK+
Sbjct: 1606 EGLLSSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKWLAYEKN 1665
Query: 1788 VGEEERIEYVKQKAMEYVEST 1808
+G++E E VK++A+EYV +
Sbjct: 1666 IGDDEGAEQVKRRAIEYVSES 1686
Score = 498 (180.4 bits), Expect = 8.0e-42, Sum P(2) = 8.0e-42
Identities = 250/1110 (22%), Positives = 444/1110 (40%)
Query: 47 DNEIEANEDNL-----LPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIWXXXXXXXXXXXX 100
DN ED L L ++ VGQ V V L ++ + GKR I
Sbjct: 158 DNAATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDANGSA 217
Query: 101 -XXETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVV 159
G ++ A V SIEDHG + G+ ++TGFL + ++ N V+ LL V+
Sbjct: 218 PEAADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKKHI--NDFPFVEGQSLLCSVI 275
Query: 160 RSIDRTRKVVYLSSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLT 218
DR + +LS ++ TK L+ + S+ ++PG ++ V I E+GV+ ++
Sbjct: 276 SKEDR---IFHLS-----LTATSTKALEVMPSVQAILPGDYINVLVTDIKESGVIAKYMG 327
Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVG-----LTLNPYL 270
T DI+H + + ++ + K V AR+LFV DP AV LT N +
Sbjct: 328 VVDVTSDIYH-SSPVKGEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSFLPHVLTFN-FA 385
Query: 271 LHNRAPPSHVKVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVT-ISDVAEEEVRKLE 329
N P + +G I + +K + +S A+++ +SD +
Sbjct: 386 TPNTPHPDQLDIGFIVNAAKVTYVSSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPNS 445
Query: 330 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 389
YK S RI+ + +++ L + S D++ G V G + + G
Sbjct: 446 GPYKVDSTHEARIINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVDGTIAKLIPQGI 505
Query: 390 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKS 447
+V G+ L P HM++ + P ++FKVG+ + RVL V KR+ +T KK+L+ +
Sbjct: 506 VVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNT 565
Query: 448 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 507
L ++ Y +AT T G + +I + G V FYN V+ F P SE+ + + V
Sbjct: 566 DLPLIYDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKV 625
Query: 508 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAK 567
GQ + I+S P +R++ + + +
Sbjct: 626 GQTLSVTIVSCDPENRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDL 685
Query: 568 GYS-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINS 623
G G I L D L + + + ++ + ++LVL ++S L LS K SL+ +
Sbjct: 686 GDKVTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEA 745
Query: 624 AQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 681
A++ +P + + + G+V N G FV F L P++ + S Y
Sbjct: 746 AKENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKAYISEEYVPVPSAVY 805
Query: 682 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA-SFMQEHFLLEEKI--AMLQSSKHNG 738
QSV L V + +S K A FM+ + ++ + + ++ +
Sbjct: 806 KPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPVDETIKKTYDYVA 865
Query: 739 SELKWVEGFIIGSVIEGKVH---ESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 795
++ W ++ S +++ +N G V E D +G I G I
Sbjct: 866 GKITWA---VVTSAKASQLNVDLAANVHGRV-DVSEVFDNFGEIVDPNKPLKRFHKGDKI 921
Query: 796 QAAILDV--AKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIV 853
+ +L + ++ + + +S + V +F E V V
Sbjct: 922 RVRVLGIHDSRNHKFLPISHR-VSPKQFLELSVRPSILNMEPFSMKEPQFKKGDEVTGFV 980
Query: 854 EIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGR 911
V + + +SL P N I ++ D QK F G+++ V+ S T
Sbjct: 981 NNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKAIKCYVVNAEDSIT--- 1037
Query: 912 LLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 971
L AI GS + ++T + L+ GR+ ++
Sbjct: 1038 ----LSAIGPLQGFENLTP--------GSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDM 1085
Query: 972 NDDKSNVVENLFS-NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1030
DD + E F+ N +G V + + P+ K + S S EI K +
Sbjct: 1086 FDDYDILPETKFTRNNLVGVCVLSVDV-----PNRKVALSARNSRTQSQPV--EIKDKEI 1138
Query: 1031 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1090
D+ IG G+V V N+ +TI +L A++ I ++ + +++++ FH+ +
Sbjct: 1139 NSVDDLKIGDICRGFVCNVANQGLFVTIGHNLIARVKI-GELFD-TFIKDWKPHFHVNQL 1196
Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKT 1120
V G ++ I+ + K + + L+ Q I D +
Sbjct: 1197 VKGSIVGIDNDSKRIEMSLK--QSKIKDSS 1224
Score = 178 (67.7 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 63/255 (24%), Positives = 114/255 (44%)
Query: 1174 VSDPLSGYDEGQFDPLSGYDE-GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST-NS 1231
VS L + + +SG+ + KV IS G + V+ + + + S N
Sbjct: 409 VSSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPN-SGPYKVDSTHEARIINYSYVDNL 467
Query: 1232 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1291
LS + +IED+ V G + + +G + +S ++ V ++++D +
Sbjct: 468 YILSFQQSVLNQQFLRIEDIEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTHMADIAL 527
Query: 1292 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1351
+ PE+ F +G V RVLS L KRV +TLK S T I + G +G +
Sbjct: 528 QFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNT-DLPLIYDYEQATPGTQTVGTL 586
Query: 1352 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
R+ G + N+ + VSE+SE ++ + ++ G+ + V I+ D E R++ +
Sbjct: 587 ARIFEDGAIVEFYNS-VRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKMRV 645
Query: 1412 GMKSSYFKNDADNLQ 1426
G + + DA L+
Sbjct: 646 GCREQSW--DAKRLE 658
Score = 154 (59.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 72/326 (22%), Positives = 132/326 (40%)
Query: 429 LGVKSKRITVTHKKTLVKSKLAILSSYAEAT--DRLITHGWITKIEKHGCFVRFYNGVQG 486
LG K V + ++ S + L + T RL+ G +T + + G ++ + G
Sbjct: 1021 LGKAIKCYVVNAEDSITLSAIGPLQGFENLTPGSRLV--GKVTNVNEAGAILQLPGHMSG 1078
Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXX 546
R ++ D P + + +V ++S +R++ LS T+
Sbjct: 1079 RVSRIDMFDDYDILPETKFTRNNLVGVCVLSVDVPNRKVALSARNSRTQSQPVEIKDKEI 1138
Query: 547 XXXXXXXXXXXXXXXXXXIAKGYSKGTIPT--EHLADHLEHATVMKSVIK---PGYEFDQ 601
+A ++G T +L ++ + + IK P + +Q
Sbjct: 1139 NSVDDLKIGDICRGFVCNVA---NQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQ 1195
Query: 602 LLV-----LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
L+ +DN+S + +S K S I + ++ + I S + G V + + G +R
Sbjct: 1196 LVKGSIVGIDNDSKRIEMSLKQSKIKDSSEITKTFADIAVGSNLDGTVVKVGDYGVLIRI 1255
Query: 657 LG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
G + G +S+ D ++SK Y G VR+++LDV+SE RI L LK S S
Sbjct: 1256 DGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLKSSYFDSDS 1315
Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSE 740
M ++ EE + M + + SE
Sbjct: 1316 DISMSDN---EEDVEMRSEDQSDTSE 1338
Score = 123 (48.4 bits), Expect = 6.9e-05, Sum P(4) = 6.9e-05
Identities = 40/177 (22%), Positives = 77/177 (43%)
Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF---- 1298
K LE+ E++ ++ G V T + L K+ + L L DG + K
Sbjct: 655 KRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDKVTGVITLGQLCDGDLNKCSKVMNKLR 714
Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESY 1357
KL VL + K + ++LK S A ++ + N+++L G G ++ ++
Sbjct: 715 ASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRMPINITDLKEGIKYFGFVRNATTF 774
Query: 1358 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
G+F+ + LV L + +SE++V +Y+ + V L V+ + + + K
Sbjct: 775 GVFVEFCD-GLVALVPKAYISEEYVPVPSAVYKPQQSVTCVCLSVELSQEKAFMSFK 830
Score = 117 (46.2 bits), Expect = 0.00027, Sum P(4) = 0.00027
Identities = 34/180 (18%), Positives = 83/180 (46%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
E +P G + + G + + A + +S +S+ Y+ + F +G+ ++ +
Sbjct: 574 EQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTI 633
Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
+S +P ++++ V + S A + E N+ G ++ G + + + + + + +
Sbjct: 634 VSCDPENRKMRVGCR-EQSWDAKRLE--RFENIKAGSVLSGIVLQKTEDSVIVDLGD-KV 689
Query: 1369 VGLCHVSELSEDHVDNIETIY---RAGEKV-KVKILKVDKEKRRISLGMKSSYFKNDADN 1424
G+ + +L + ++ + RA K+ +V +L+ D K+ ISL +K S + +N
Sbjct: 690 TGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKEN 749
Score = 64 (27.6 bits), Expect = 2.0e-87, Sum P(2) = 2.0e-87
Identities = 42/193 (21%), Positives = 80/193 (41%)
Query: 633 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP----------RSKAVDGQRADLSKTYY 682
+I P S++ G + I V LTG+ P R ++D D + T
Sbjct: 105 NITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNAATEE 164
Query: 683 V-GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 741
G + +++D+ + +S+ +T + + H L L+ NGS
Sbjct: 165 EDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTG-KRHIELS-----LKPQDANGSAP 218
Query: 742 KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY-GFITHHQLAGATVESGSVIQAAIL 800
+ + F+ GS+I+ V D G+V F+ + Y GF++ + G + ++
Sbjct: 219 EAAD-FVAGSMIQAVVSSIEDHGIV--FDIGINNYTGFLSKKHINDFPFVEGQSLLCSV- 274
Query: 801 DVAKAERLVDLSL 813
++K +R+ LSL
Sbjct: 275 -ISKEDRIFHLSL 286
Score = 61 (26.5 bits), Expect = 6.9e-05, Sum P(4) = 6.9e-05
Identities = 29/92 (31%), Positives = 43/92 (46%)
Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
I G V G I+K++ G+VV I + G V T + +I + QF P
Sbjct: 487 IEVGQFVDGTIAKLIPQ--GIVVTISEGINGLVPSTHMADIAL----------QF-PERR 533
Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1223
+ G VKC+VL + +R V L+L+ SL
Sbjct: 534 FKVGSSVKCRVLS-TNVLRK--RVLLTLKKSL 562
Score = 59 (25.8 bits), Expect = 3.9e-87, Sum P(3) = 3.9e-87
Identities = 36/156 (23%), Positives = 62/156 (39%)
Query: 946 ITEIKP-LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD 1004
IT I L RL I H + +D N + +L +K+GQ V + A ++
Sbjct: 138 ITNISDKLSDRLD-SIDNHAEDNAATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENT 196
Query: 1005 MK--KSFLWELSIKP-----SMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD-NEWALL 1056
K K + ELS+KP S ++ + + + SI G V+ + N +
Sbjct: 197 TKTGKRHI-ELSLKPQDANGSAPEAADFVAGSMIQAVVSSIEDH--GIVFDIGINNYTGF 253
Query: 1057 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1092
+H+ F+ + S + + R FH+ T
Sbjct: 254 LSKKHINDFPFVEGQSLLCSVISKEDRIFHLSLTAT 289
Score = 55 (24.4 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 939 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 982
GSL+ +I +I L+L + G + IT ++D S+ ++++
Sbjct: 109 GSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSI 152
Score = 51 (23.0 bits), Expect = 3.9e-87, Sum P(3) = 3.9e-87
Identities = 7/41 (17%), Positives = 22/41 (53%)
Query: 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+ ++ PG ++ G++ +++ V P + P+ ++S+
Sbjct: 103 YKNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISD 143
Score = 46 (21.3 bits), Expect = 1.3e-86, Sum P(3) = 1.3e-86
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVI 26
+NI+ G + G +A++N DL +
Sbjct: 104 KNITPGSLILGQIAQINTLDLAV 126
Score = 44 (20.5 bits), Expect = 2.5e-85, Sum P(2) = 2.5e-85
Identities = 31/178 (17%), Positives = 66/178 (37%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILDNEIEANEDNLLPTIFH 63
+NI AG L G+V + E +++ + D ++ ++ +
Sbjct: 661 ENIKAGSVLSGIVLQKTEDSVIV----DLGDKVTGVITLGQLCDGDLNKCS-KVMNKLRA 715
Query: 64 VGQLVSCIVLQLDDDKKEIG-KRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIEDHG 122
+L +VL+ D KK I K ++EG+ +V++ G
Sbjct: 716 STKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRMPINITDLKEGIKYFGFVRNATTFG 775
Query: 123 YILHFGLPSFTGFLPRNNLAEN-----SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 175
+ F +P+ ++E S + KP + V S++ +++ ++S P
Sbjct: 776 VFVEF-CDGLVALVPKAYISEEYVPVPSAV-YKPQQSVTCVCLSVELSQEKAFMSFKP 831
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 721 HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF--GVVVSFEEHSDVYGF 778
H LLE + L S+H G +E F I G G++ S+ + D++
Sbjct: 1566 HGLLERSLQSLPKSEHVGI----IEKFAILEFKNGDPERGRTIFEGLLSSYPKRLDLWNV 1621
Query: 779 I 779
+
Sbjct: 1622 L 1622
>WB|WBGene00002850 [details] [associations]
symbol:let-716 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0040010 GO:GO:0008406 GO:GO:0002119
GO:GO:0003723 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0007276
InterPro:IPR022967 SMART:SM00316 EMBL:FO080367 eggNOG:COG0539
KO:K14792 GeneTree:ENSGT00390000012228 PIR:E88481
RefSeq:NP_498398.1 ProteinModelPortal:Q18038 SMR:Q18038
STRING:Q18038 PaxDb:Q18038 EnsemblMetazoa:C16A3.3 GeneID:175906
KEGG:cel:CELE_C16A3.3 CTD:175906 WormBase:C16A3.3
HOGENOM:HOG000018736 InParanoid:Q18038 OMA:NMEVAYG NextBio:890242
Uniprot:Q18038
Length = 1743
Score = 427 (155.4 bits), Expect = 7.6e-53, Sum P(4) = 7.6e-53
Identities = 92/266 (34%), Positives = 152/266 (57%)
Query: 1545 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1604
++ ++ RLVRS PNS+ WI+YM+ + +D+ AR AE AL IN E +E L IW
Sbjct: 1470 KSEEDHSRLVRSDPNSAINWIEYMSHFIEKSDLAAARKTAEEALGAINPTESDELLKIWT 1529
Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1664
AY N+E YG+ V KVF+RA + + VH L +Y++ E+N A ++L +M+KK
Sbjct: 1530 AYLNMEVAYGDAA--TVQKVFERACKNANAYTVHKTLSKIYQKFEKNAEATQILEQMVKK 1587
Query: 1665 FK-HSCKVWXXXXXXXXXXXXE-GVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVAD 1721
F+ + +VW + + ++ RAL S P+ +H++ IS+ A LEFK+G A+
Sbjct: 1588 FRANQLEVWTLLAEHLMTQNDQKAARELLPRALKSAPKAQQHVQLISKFAQLEFKHGDAE 1647
Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXY 1781
RGR++ EG+++ +PK+TDLW +Y + ++ ++ R + ERA +
Sbjct: 1648 RGRTLLEGLVTAHPKKTDLWLVYAEAVLKHLGIEHARKVLERACNLGFSIHKMRPLYKKW 1707
Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVES 1807
LE E G+ +E VK KA +++++
Sbjct: 1708 LEMESKHGDAAAVELVKAKAEKFLQA 1733
Score = 188 (71.2 bits), Expect = 7.6e-53, Sum P(4) = 7.6e-53
Identities = 114/534 (21%), Positives = 213/534 (39%)
Query: 9 GMKLWGVVAEVNEKDLVICXXXXXXXXXXXXXXXXXILDNEIEANEDNL-LPTIFHVGQL 67
G+ +GVV+EV + +++ E+ NE+ + + F +GQ+
Sbjct: 72 GLTGFGVVSEVFDDGVLLHTAGTHTVKIHASEVSKKF--TEL-FNEEKIEIKNAFQLGQM 128
Query: 68 VSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIEDHGYILHF 127
V V+ K+ K K+ + G+VL V SIE+ G IL
Sbjct: 129 VPFRVIS---KKQGNDKGKVKGTCNPARLNKHLSPNMLAAGLVLHTAVVSIEEKGAILDV 185
Query: 128 GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLK 187
GL TGF+ ++ +G+ K G+ L +VR + T +VV ++S + + +T K
Sbjct: 186 GLDQITGFIEKSQFPA-AGL--KEGMPL--IVRVLSSTSRVVKVTSFVEQDNLNMTSCEK 240
Query: 188 GISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 246
+ ++ L+PG ++ + GV+++ G I +N P +N K
Sbjct: 241 -LQLNHLMPGTILECEPTGDAVTAGVIVNI---GNGLKGILPRRNLPPRLR-ENPEKLGK 295
Query: 247 KVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVGDIYDQSKXXXXXXXXXXX 301
+ A ++F S+ + L +P + + R + +GD +
Sbjct: 296 AIRAIVMFCQQNSKILVLNAHPDIVAASRIEKRTSFEGISIGDKVKCTVIDVLPTKSMVY 355
Query: 302 XXIPSTPVSTPAYVTISDVAE-EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA 360
+P+ +S E+ ++ +Y+ G+ R+ GFR+ + T +
Sbjct: 356 FALPAIDGKKSLVTAVSSRGLLEKPDQVSTEYEVGTEKLCRVTGFRYADRSITISTRKDI 415
Query: 361 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--F 418
+ + D K G V+ +V V G VKA PL +S+ + K +
Sbjct: 416 LNQKITKYQDAKCGDVLDARVHHVAKSGVYFMVCNFVKAFAPLSMLSDKPLPAQKMKNIY 475
Query: 419 KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 476
KVG E+ RV + + K + VT +++++ K ++S E + I K+ G
Sbjct: 476 KVGTEVKCRVWQICDERKNLIVTCRESILGLKSPSVNSVQELEIGVTVPCVIRKVFPTGV 535
Query: 477 FVR-FYNGVQGFAPRSELGLD-PGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
+ +N + G R E + PG ++ + V V K + R +N S
Sbjct: 536 LLLGTFNNICGVL-RKESAVHLPGTPKNNDFVVANVEKIEDNRVVFVLRDVNPS 588
Score = 88 (36.0 bits), Expect = 6.7e-38, Sum P(3) = 6.7e-38
Identities = 35/143 (24%), Positives = 64/143 (44%)
Query: 1231 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1290
S +ST D + + K +D ++ V +V G + M+ + A LS LSD
Sbjct: 406 SITISTRKDILNQKITKYQDAKCGDVLDARVHHVAKSGVYFMVCNFVKAFAPLSMLSDKP 465
Query: 1291 VESPEKE--FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1348
+ + + + + +G V RV + K + VT + S S S +N++ L +G V
Sbjct: 466 LPAQKMKNIYKVGTEVKCRVWQICDERKNLIVTCRESILGLKSPS-VNSVQELEIGVTVP 524
Query: 1349 GQIKRVESYGLFITIENTNLVGL 1371
I++V G+ + N+ G+
Sbjct: 525 CVIRKVFPTGVLLLGTFNNICGV 547
Score = 78 (32.5 bits), Expect = 3.7e-16, Sum P(4) = 3.7e-16
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
DA R E LV + P + +W+ Y +L +E AR + ERA N+ K+
Sbjct: 1645 DAERGRTLLEGLVTAHPKKTDLWLVYAEAVLKHLGIEHARKVLERAC---NLGFSIHKMR 1701
Query: 1602 -IWVAYFNLENEYGNPPEEAVVK 1623
++ + +E+++G+ +VK
Sbjct: 1702 PLYKKWLEMESKHGDAAAVELVK 1724
Score = 77 (32.2 bits), Expect = 7.6e-53, Sum P(4) = 7.6e-53
Identities = 46/204 (22%), Positives = 86/204 (42%)
Query: 970 EVNDDKSNVV--ENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1027
EVN + + ENL + K+ + K +M+++ + + K L ++ +
Sbjct: 1128 EVNPVWTGTISRENLSDDLKVTAADGGIVDLALKKGEMREAKITAVDRKNMSLKLTLDTA 1187
Query: 1028 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF--ILDSAYEPSELQEFQRRF 1085
+ FE IG VTG V+ V + L +S +A L + YE E + + +
Sbjct: 1188 EEAFE-----IGASVTGRVFFVSKTYIRLKLSSGQQAVLTPTAITDKYETIE-KITENQL 1241
Query: 1086 HIGKAVTGHVLSINKEKKLLRLVLRP-FQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1144
GK V + ++ + +VL+ F +D + D+ + EGD G +
Sbjct: 1242 TDGKLVDVVCAKLQEKPRRYFVVLKNRFNSKSTDAKRQLLLDSK--LMKEGDQYDGIVEN 1299
Query: 1145 ILSGVGGLVVQIGPHLYGRVHFTE 1168
+ G L +++GP + GR+ E
Sbjct: 1300 --ASKGSLFIELGPGVSGRIPVNE 1321
Score = 76 (31.8 bits), Expect = 1.2e-37, Sum P(4) = 1.2e-37
Identities = 28/143 (19%), Positives = 66/143 (46%)
Query: 1280 KVLLSNLSD-GYVESPEK---EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1335
K L++ +S G +E P++ E+ +G RV + +T+ T + +I
Sbjct: 365 KSLVTAVSSRGLLEKPDQVSTEYEVGTEKLCRVTGFRYADR--SITISTR--KDILNQKI 420
Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--DNIETIYRAGE 1393
+ GD++ ++ V G++ + N + +S LS+ + ++ IY+ G
Sbjct: 421 TKYQDAKCGDVLDARVHHVAKSGVYFMVCNF-VKAFAPLSMLSDKPLPAQKMKNIYKVGT 479
Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
+VK ++ ++ E++ + + + S
Sbjct: 480 EVKCRVWQICDERKNLIVTCRES 502
Score = 64 (27.6 bits), Expect = 7.6e-53, Sum P(4) = 7.6e-53
Identities = 38/153 (24%), Positives = 67/153 (43%)
Query: 626 QLPSDASHIHPNSVVHGYVCNII-ETGCFVRFLGRLTGFAPRSKAVDGQRA-DLSKTYYV 683
+LP + V+ G V +I G FV +G +G K ++ + A + S+ V
Sbjct: 702 KLPKKIDELKVGKVIVGIVGQVITNVGVFVELVGG-SGLV--GKVLERKNAKNTSELLEV 758
Query: 684 GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 743
GQ + I +++ T + S C+ + E L + + +L+S E+KW
Sbjct: 759 GQVIVGTIESIDT-TKK---SFLIDPCTDLETG---ELMLKKYALPLLESIVE---EVKW 808
Query: 744 V---EGFII-GSVIEGKVHESNDFGVVVSFEEH 772
+ + I GS + GKV + D +V FE +
Sbjct: 809 LAEQSNYPIPGSKVNGKVTKELDDLTLVEFEHN 841
Score = 61 (26.5 bits), Expect = 4.3e-35, Sum P(3) = 4.3e-35
Identities = 34/117 (29%), Positives = 49/117 (41%)
Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRK---LDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
LSPNM+ G V + + + K LD V L ++ G++E + +FP L G
Sbjct: 158 LSPNMLAAGLVLHTA----VVSIEEKGAILD--VGLDQIT-GFIE--KSQFPAAGLKEGM 208
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLS--NLHVGDIVIGQIKRVESYGLFIT 1362
L V LS V TS Q +N S L + ++ G I E G +T
Sbjct: 209 PLIVRVLSSTSRVVKVTS---FVEQDNLNMTSCEKLQLNHLMPGTILECEPTGDAVT 262
Score = 60 (26.2 bits), Expect = 4.4e-51, Sum P(4) = 4.4e-51
Identities = 35/141 (24%), Positives = 60/141 (42%)
Query: 1292 ESPEKEFP---IGKLVAGRVLSVEPLSK--RV-EVTLKTSDSRTAS--QSEINNLSNLHV 1343
E+P EF + K V R++ SK R+ E+T+ S + S ++ SN +
Sbjct: 1048 ENPLDEFVKRNVRKAVIVRIIGFIKSSKGPRIAELTMIPSKIQAGKVRASNLSYKSNYKI 1107
Query: 1344 GDIV--IGQIKRVESYGLFITIENTNLVGLCHVSELSED----HVDN--IETIYRAGEKV 1395
GD+V G E L + + N G LS+D D ++ + GE
Sbjct: 1108 GDVVKCFGANTMTEKQELKVEV-NPVWTGTISRENLSDDLKVTAADGGIVDLALKKGEMR 1166
Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
+ KI VD++ + L + ++
Sbjct: 1167 EAKITAVDRKNMSLKLTLDTA 1187
Score = 59 (25.8 bits), Expect = 1.2e-37, Sum P(4) = 1.2e-37
Identities = 34/123 (27%), Positives = 56/123 (45%)
Query: 1176 DPLSGY-DEGQFDPLSGYDEGQFVKCKVLE-ISRTVRGTFHVELSLRSSLDGMSSTNSSD 1233
D ++G+ ++ QF P +G EG + +VL SR V+ T VE D ++ T+
Sbjct: 188 DQITGFIEKSQF-PAAGLKEGMPLIVRVLSSTSRVVKVTSFVEQ------DNLNMTSCEK 240
Query: 1234 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1293
L + PG LE + + + + G + N+ G +L R+ NL E+
Sbjct: 241 LQLNHLMPGTILEC--EPTGDAVTAGVIVNI-GNGLKGILPRR--------NLPPRLREN 289
Query: 1294 PEK 1296
PEK
Sbjct: 290 PEK 292
Score = 57 (25.1 bits), Expect = 4.0e-52, Sum P(4) = 4.0e-52
Identities = 27/108 (25%), Positives = 48/108 (44%)
Query: 606 DNESSNLLLSAKY------SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL-- 657
D E+ L+L KY S++ + L +++ P S V+G V ++ V F
Sbjct: 783 DLETGELMLK-KYALPLLESIVEEVKWLAEQSNYPIPGSKVNGKVTKELDDLTLVEFEHN 841
Query: 658 GR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
G+ + G P K VD ++ KT + ++D+N T + L+
Sbjct: 842 GKKIAGILP--KMVDDKKTT-EKTKKKKATKSFIVVDINHSTNEVVLA 886
Score = 53 (23.7 bits), Expect = 1.9e-35, Sum P(5) = 1.9e-35
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 136 LPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL 194
L R N A+N+ ++ G ++ G + SID T+K + DP T + LK ++ LL
Sbjct: 744 LERKN-AKNTSELLEVGQVIVGTIESIDTTKKSFLI--DPCTDLETGELMLKKYALPLL 799
Score = 50 (22.7 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 34/140 (24%), Positives = 62/140 (44%)
Query: 1201 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1260
++LE+ + + GT +E S+D + D TD++T L+K IV+
Sbjct: 754 ELLEVGQVIVGT--IE-----SIDTTKKSFLIDPCTDLETGELMLKKYALPLLESIVEE- 805
Query: 1261 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1320
VK + + + + K++ KV L D + E GK +AG + + K E
Sbjct: 806 VKWLAEQSNYPIPGSKVNGKVT-KELDDLTLVEFEHN---GKKIAGILPKMVDDKKTTEK 861
Query: 1321 TLKTSDSRTASQSEINNLSN 1340
T K +++ +IN+ +N
Sbjct: 862 TKKKKATKSFIVVDINHSTN 881
Score = 50 (22.7 bits), Expect = 6.9e-36, Sum P(4) = 6.9e-36
Identities = 20/91 (21%), Positives = 38/91 (41%)
Query: 569 YSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL 627
+ K P L+D A MK++ K G E ++ + +E NL+++ + S++
Sbjct: 451 FVKAFAPLSMLSDKPLPAQKMKNIYKVGTEVKCRVWQICDERKNLIVTCRESILGLKSPS 510
Query: 628 PSDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
+ + V + + TG V LG
Sbjct: 511 VNSVQELEIGVTVPCVIRKVFPTG--VLLLG 539
Score = 49 (22.3 bits), Expect = 1.6e-48, Sum P(3) = 1.6e-48
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 1294 PEK--EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN----LHVGDIV 1347
P+K E +GK++ G V V + V V L E N N L VG ++
Sbjct: 704 PKKIDELKVGKVIVGIVGQVIT-NVGVFVELVGGSGLVGKVLERKNAKNTSELLEVGQVI 762
Query: 1348 IGQIKRVES 1356
+G I+ +++
Sbjct: 763 VGTIESIDT 771
Score = 47 (21.6 bits), Expect = 9.8e-50, Sum P(4) = 9.8e-50
Identities = 61/316 (19%), Positives = 107/316 (33%)
Query: 731 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-EHSDVY-GFITHHQLAG-- 786
+Q+ K S L + + IG V+ K +N + E + V+ G I+ L+
Sbjct: 1089 IQAGKVRASNLSYKSNYKIGDVV--KCFGANTMTEKQELKVEVNPVWTGTISRENLSDDL 1146
Query: 787 -ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAXXXXXXXXXXXXXXXXXDLGV 845
T G ++ A+ K E K +DR ++G
Sbjct: 1147 KVTAADGGIVDLAL---KKGEMR---EAKITAVDR-----KNMSLKLTLDTAEEAFEIGA 1195
Query: 846 HQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSD-YNT-QKFPQKQFLNGQSVIATVMA 902
+V V V + Y+ L L ++ +++D Y T +K + Q +G+ V
Sbjct: 1196 --SVTGRVFFVSKTYIRLKLSSGQQAVLTPTAITDKYETIEKITENQLTDGKLVDVVCAK 1253
Query: 903 LPSSSTAGRLLLLLKAIXXXXXXXXXXXXXXXXYDVGSLVQAEITEIKPLELRLKFGIGF 962
L ++L + G + L ++ G G
Sbjct: 1254 LQEKPRRYFVVLKNRFNSKSTDAKRQLLLDSKLMKEGDQYDGIVENASKGSLFIELGPGV 1313
Query: 963 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1022
GRI + E N D + N + + I K + ++K W ++KP
Sbjct: 1314 SGRIPVNEENQDLLEIGTNSVIRVTVVKVAKNEITLKLDDILIRK---W--TVKPDRKRT 1368
Query: 1023 SE----IGSKL-LFEE 1033
S + SK+ L EE
Sbjct: 1369 SSKSEGVPSKVALLEE 1384
Score = 47 (21.6 bits), Expect = 6.7e-38, Sum P(3) = 6.7e-38
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 961 GFHG-RIHITEVNDDKSNVV--ENL-FSN-FKIGQTVTARIIAKSNKPDMKK 1007
G H +IH +EV+ + + E + N F++GQ V R+I+K D K
Sbjct: 93 GTHTVKIHASEVSKKFTELFNEEKIEIKNAFQLGQMVPFRVISKKQGNDKGK 144
Score = 46 (21.3 bits), Expect = 1.2e-49, Sum P(4) = 1.2e-49
Identities = 30/107 (28%), Positives = 45/107 (42%)
Query: 1229 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ----GYVKNVTSKGCFIMLSRKLDAKVLLS 1284
T +L +V+ E+LS ++ V G V KG M K+ A V
Sbjct: 1120 TEKQELKVEVNPVWTGTISRENLSDDLKVTAADGGIVDLALKKG--EMREAKITA-VDRK 1176
Query: 1285 NLSDGY-VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
N+S +++ E+ F IG V GRV V + + LK S + A
Sbjct: 1177 NMSLKLTLDTAEEAFEIGASVTGRVFFVS----KTYIRLKLSSGQQA 1219
Score = 43 (20.2 bits), Expect = 2.4e-34, Sum P(4) = 2.4e-34
Identities = 28/98 (28%), Positives = 41/98 (41%)
Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
G G VKC V+++ T + + L ++DG S L T V + G LEK +
Sbjct: 333 GISIGDKVKCTVIDVLPT-KSMVYFALP---AIDGKKS-----LVTAVSSRGL-LEKPDQ 382
Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1288
+S V G T K C + R D + +S D
Sbjct: 383 VSTEYEV-G-----TEKLCRVTGFRYADRSITISTRKD 414
Score = 42 (19.8 bits), Expect = 2.5e-34, Sum P(5) = 2.5e-34
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 54 EDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRK 86
+D L H G+ ++ I+ ++ DDKK K K
Sbjct: 831 DDLTLVEFEHNGKKIAGILPKMVDDKKTTEKTK 863
Score = 42 (19.8 bits), Expect = 3.1e-34, Sum P(4) = 3.1e-34
Identities = 18/88 (20%), Positives = 34/88 (38%)
Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
D G + V+ V + +KA + + +P Q+ + + +G V
Sbjct: 425 DAKCGDVLDARVHHVAKSGVYFMVCNFVKAFAPLSMLSDKPLPAQKMKNIYKVGTEVKCR 484
Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVD 1122
V I E+K L + R G+ +V+
Sbjct: 485 VWQICDERKNLIVTCRESILGLKSPSVN 512
Score = 42 (19.8 bits), Expect = 3.1e-34, Sum P(4) = 3.1e-34
Identities = 30/124 (24%), Positives = 47/124 (37%)
Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGR--VHFTELKNICVSDPLSGYDE 1183
D T DI+ +I+K G V+ H + V+F + PLS +
Sbjct: 404 DRSITISTRKDILNQKITKYQDAKCGDVLDARVHHVAKSGVYFMVCNFVKAFAPLSMLSD 463
Query: 1184 GQF--DPLSG-YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS--TNS-SDLSTD 1237
+ Y G VKC+V +I + ++ R S+ G+ S NS +L
Sbjct: 464 KPLPAQKMKNIYKVGTEVKCRVWQICDERKNLI---VTCRESILGLKSPSVNSVQELEIG 520
Query: 1238 VDTP 1241
V P
Sbjct: 521 VTVP 524
Score = 40 (19.1 bits), Expect = 5.5e-36, Sum P(4) = 5.5e-36
Identities = 27/130 (20%), Positives = 54/130 (41%)
Query: 984 SNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDVSIGQR 1041
+ K G + R+++ +++ SF+ + ++ + ++ + EC+ + G
Sbjct: 202 AGLKEGMPLIVRVLSSTSRVVKVTSFVEQDNLNMTSCEKLQLNHLMPGTILECEPT-GDA 260
Query: 1042 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1101
VT V ++ I LK IL P L+E + +GKA+ V+ +
Sbjct: 261 VTAGV--------IVNIGNGLKG---ILPRRNLPPRLRENPEK--LGKAIRAIVMFCQQN 307
Query: 1102 KKLLRLVLRP 1111
K+L L P
Sbjct: 308 SKILVLNAHP 317
Score = 39 (18.8 bits), Expect = 3.0e-50, Sum P(4) = 3.0e-50
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 503 SMYHVGQVVKC 513
S Y +G VVKC
Sbjct: 1103 SNYKIGDVVKC 1113
Score = 39 (18.8 bits), Expect = 3.7e-31, Sum P(4) = 3.7e-31
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 130 PSFTGFLPRNNLAEN-------SGI-DV--KPGLLLQGVVRSIDRTRKVVYLSSD 174
P +TG + R NL+++ GI D+ K G + + + ++DR + L+ D
Sbjct: 1131 PVWTGTISRENLSDDLKVTAADGGIVDLALKKGEMREAKITAVDRKNMSLKLTLD 1185
Score = 38 (18.4 bits), Expect = 2.5e-37, Sum P(4) = 2.5e-37
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 3 PQNISAGMKLWGVVAEVNEKDLVI 26
P ++AG+ L V + EK ++
Sbjct: 160 PNMLAAGLVLHTAVVSIEEKGAIL 183
Score = 38 (18.4 bits), Expect = 2.5e-37, Sum P(4) = 2.5e-37
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 538
+EL + E + + +GQ+V R++S + + + P R+++
Sbjct: 109 TELFNEEKIEIKNAFQLGQMVPFRVISKKQGNDKGKVKGTCNPARLNK 156
>DICTYBASE|DDB_G0290181 [details] [associations]
symbol:DDB_G0290181 "RNA binding S1 domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0290181 GO:GO:0003723
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000158
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 KO:K14792
RefSeq:XP_635864.1 ProteinModelPortal:Q54GG4
EnsemblProtists:DDB0238055 GeneID:8627520 KEGG:ddi:DDB_G0290181
OMA:QRNIWIA Uniprot:Q54GG4
Length = 909
Score = 503 (182.1 bits), Expect = 4.6e-52, Sum P(4) = 4.6e-52
Identities = 107/275 (38%), Positives = 165/275 (60%)
Query: 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1602
AP P +FER++ +PNSS++WIK+M++ L ++++ KAR I ERA++ I + E+ NI
Sbjct: 635 APEGPQDFERMILGTPNSSYIWIKFMSYYLGLSEINKAREIGERAIKKIIPTQVLEQRNI 694
Query: 1603 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1662
W+A +NLEN YG P ++++K+FQR++QY DPK ++L ++ + E T + + +E +
Sbjct: 695 WIAMYNLENLYGTP--DSLLKLFQRSIQYQDPKTMYLTIINILENTGKFERTEEYFKMLF 752
Query: 1663 KKF-KHSCKVWXXXXXXXXX-XXXEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1720
KK KHS KVW E +++ RAL LP+ K IK I++ A LE+K G
Sbjct: 753 KKDGKHSAKVWCRYGEFLLKCNNIEVFNSILSRALEILPKKKQIKVINKFAQLEYKLGDI 812
Query: 1721 DRGRSMFEGILSEYPKRTDLWSIYLDQEIR-----LGDVDL---IRGLFERAIXXXXXXX 1772
+RGR++FEG++S YP RTD+W+IYLD E+R +L IR LF R I
Sbjct: 813 ERGRTIFEGLVSNYPNRTDIWNIYLDMELRDKESIKSSKELKEKIRMLFNRTIALKVSDR 872
Query: 1773 XXXXXXXXYLEYEKSVGEEERIEYVKQKAMEYVES 1807
+L++EK G VK+ A+++VES
Sbjct: 873 NIKQFFKRFLQFEKEFGSNFTTNEVKKLAIKFVES 907
Score = 119 (46.9 bits), Expect = 4.6e-52, Sum P(4) = 4.6e-52
Identities = 43/161 (26%), Positives = 78/161 (48%)
Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
D + V G+V T + + L +L A + + ++ + S + +G+LV V+
Sbjct: 321 DFTVGAQVWGFVIEKTQQIIRVELKGQLIAILQVEDVGPFLLSSCD----VGRLVRV-VI 375
Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
S EP +E +L+ + + V DI+ +I +++YGLF+ +N +
Sbjct: 376 SSEPT---IEGSLQVVKAHLHVDKTALTPKTIEVNDIIPLEIISIKNYGLFV--KNKKVS 430
Query: 1370 GLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRR 1408
GL H+SEL ++ VD I+ +Y GE V K + +K K +
Sbjct: 431 GLAHISELDDEPVDPEQIDKLYSVGEFVLGKCIGKEKNKEK 471
Score = 81 (33.6 bits), Expect = 4.0e-48, Sum P(4) = 4.0e-48
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 1332 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1391
+ I+N + VGDI+IG IK V + + + + N NL G + +L+++ N +IY+
Sbjct: 215 KESISN-EKMKVGDIMIGLIKEVGNLSIKVQLYN-NLSGEVRLIDLNDELRTNPLSIYKT 272
Query: 1392 GEKVKVKILKVDKE 1405
+ V + + KE
Sbjct: 273 DTLIMVCVKSIGKE 286
Score = 68 (29.0 bits), Expect = 5.9e-46, Sum P(2) = 5.9e-46
Identities = 22/116 (18%), Positives = 50/116 (43%)
Query: 1302 KLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
K V + ++ P S T K+ + + ++ EIN +G+ + +K + + +
Sbjct: 19 KKVITKPTTISPKSTTTSTTTKSIPKNEKIVNKKEINENDKFKIGNKIEVCVKEIRDFEV 78
Query: 1360 FITIENTNLVGLCHVSE--LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
T E+ +G HV L + +++ + G + I+ ++ + I+L M
Sbjct: 79 ITTFED--YIGKLHVCNIPLPDKEGESVLNSIKKGNTLNCFIVSIEPTAKIITLTM 132
Score = 61 (26.5 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 1717 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765
N VA G FE ++ P + +W ++ + L +++ R + ERAI
Sbjct: 632 NNVAPEGPQDFERMILGTPNSSYIWIKFMSYYLGLSEINKAREIGERAI 680
Score = 59 (25.8 bits), Expect = 4.6e-52, Sum P(4) = 4.6e-52
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 737 NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 772
N E+ + F IG+ IE V E DF V+ +FE++
Sbjct: 50 NKKEINENDKFKIGNKIEVCVKEIRDFEVITTFEDY 85
Score = 56 (24.8 bits), Expect = 0.00054, Sum P(4) = 0.00054
Identities = 19/80 (23%), Positives = 37/80 (46%)
Query: 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFML-SMADVEKARSIAE--RAL--QTINIREE 1596
D R FE LV + PN + +W Y+ L ++ ++ + E R L +TI ++
Sbjct: 811 DIERGRTIFEGLVSNYPNRTDIWNIYLDMELRDKESIKSSKELKEKIRMLFNRTIALKVS 870
Query: 1597 NEKLN-IWVAYFNLENEYGN 1615
+ + + + E E+G+
Sbjct: 871 DRNIKQFFKRFLQFEKEFGS 890
Score = 53 (23.7 bits), Expect = 3.2e-45, Sum P(4) = 3.2e-45
Identities = 70/341 (20%), Positives = 145/341 (42%)
Query: 938 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD-KSNVVENLFSNFKIGQTVTARI 996
VG ++ I E+ L ++++ G + + ++ND+ ++N + ++ I V +
Sbjct: 225 VGDIMIGLIKEVGNLSIKVQLYNNLSGEVRLIDLNDELRTNPLSIYKTDTLI--MVCVKS 282
Query: 997 IAKSN-KPDMKKSFL----WEL--------SIKPSMLTVSEIGSKL---LFEECDVSIGQ 1040
I K KS L WE+ S+K S+ T +G+++ + E+ I
Sbjct: 283 IGKEGILLSTYKSLLGLKTWEMNPKYKHQRSVKRSITTDFTVGAQVWGFVIEKTQQIIRV 342
Query: 1041 RVTGY---VYKVDNEWALLTISRHLKAQLFILDSAYEPS---ELQEFQRRFHIGK-AVTG 1093
+ G + +V++ L S + + ++ S+ EP+ LQ + H+ K A+T
Sbjct: 343 ELKGQLIAILQVEDVGPFLLSSCDVGRLVRVVISS-EPTIEGSLQVVKAHLHVDKTALTP 401
Query: 1094 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1153
+ +N L + ++ + G+ K +S + + + + +I K+ S VG V
Sbjct: 402 KTIEVNDIIPLEIISIKNY--GLFVKNKKVSGLAHISELDDEPVDPEQIDKLYS-VGEFV 458
Query: 1154 VQ--IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
+ IG T K + D Q+ + +D+ ++ EI + ++
Sbjct: 459 LGKCIGKEKNKEKGKTIFKFTLKPEHFQSIDMEQYLKCN-WDQEDPIE----EIYQPLKP 513
Query: 1212 TFHVE-LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
T + L ++S L T SDL+T ++ K+ K+E +
Sbjct: 514 TKIISTLPIKSFL-----TQLSDLTTTINNNNKNKNKLETI 549
Score = 52 (23.4 bits), Expect = 8.3e-52, Sum P(3) = 8.3e-52
Identities = 39/201 (19%), Positives = 81/201 (40%)
Query: 322 EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 381
++E + K+G+ + I+ +E A I+ + FE L K G V V
Sbjct: 98 DKEGESVLNSIKKGNTLNCFIVS---IEPTAK-IITLTMFEQLKPQSKQFKVGQQVDAIV 153
Query: 382 IAVDSFGAIVQF--P---GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRI 436
+ S I + P G ++ + ++S+F+ +K F + + + +G+ +K
Sbjct: 154 YGLTSVNEITCWISPTQIGTIEIISNFKNISQFKSLKEKNTF---VKCLIKSIGIDNKIY 210
Query: 437 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 496
K+++ K+ + D +I G I ++ V+ YN + G +L +
Sbjct: 211 LSIGKESISNEKMKV-------GDIMI--GLIKEVGNLSIKVQLYNNLSGEVRLIDLNDE 261
Query: 497 PGCEPSSMYHVGQVVKCRIMS 517
P S+Y ++ + S
Sbjct: 262 LRTNPLSIYKTDTLIMVCVKS 282
Score = 51 (23.0 bits), Expect = 2.1e-44, Sum P(3) = 2.1e-44
Identities = 27/106 (25%), Positives = 50/106 (47%)
Query: 335 GSCVRVRILGFRHLEGLATGILKASAF-EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 393
G VRV I +EG + ++KA + T ++ ++ ++I++ ++G V+
Sbjct: 368 GRLVRVVISSEPTIEG-SLQVVKAHLHVDKTALTPKTIEVNDIIPLEIISIKNYGLFVKN 426
Query: 394 PGGVKALCPLPHMSEF--EIVKP---GKKFKVGAELVFRVLGVKSK 434
K + L H+SE E V P K + VG ++ + +G K K
Sbjct: 427 ----KKVSGLAHISELDDEPVDPEQIDKLYSVGEFVLGKCIG-KEK 467
Score = 49 (22.3 bits), Expect = 1.7e-51, Sum P(3) = 1.7e-51
Identities = 22/94 (23%), Positives = 42/94 (44%)
Query: 197 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK---VNARIL 253
G + V+ I + V+ +F Y G + + ++ P ++ N KK +N I+
Sbjct: 63 GNKIEVCVKEIRDFEVITTFEDYI-GKLHVCNIP--LPDKEGESVLNSIKKGNTLNCFIV 119
Query: 254 FVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYD 287
++PT++ + LT+ L + KVG D
Sbjct: 120 SIEPTAKIITLTMFEQL---KPQSKQFKVGQQVD 150
Score = 45 (20.9 bits), Expect = 2.1e-44, Sum P(4) = 2.1e-44
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
GK E + I+ G +K V + + L L +V L +L+D +P +
Sbjct: 214 GKESISNEKMKVGDIMIGLIKEVGNLSIKVQLYNNLSGEVRLIDLNDELRTNPLSIYKTD 273
Query: 1302 KLVAGRVLSV 1311
L+ V S+
Sbjct: 274 TLIMVCVKSI 283
Score = 43 (20.2 bits), Expect = 7.3e-51, Sum P(3) = 7.3e-51
Identities = 26/98 (26%), Positives = 40/98 (40%)
Query: 108 GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGI--DVKPGLLLQGVVRS 161
G + VK I D I F + G L N+ E + +K G L + S
Sbjct: 63 GNKIEVCVKEIRDFEVITTF--EDYIGKLHVCNIPLPDKEGESVLNSIKKGNTLNCFIVS 120
Query: 162 IDRTRKVVYLSSDPDTVSKCVTKDLK-GISIDLLVPGM 198
I+ T K++ L+ K +K K G +D +V G+
Sbjct: 121 IEPTAKIITLTMFEQL--KPQSKQFKVGQQVDAIVYGL 156
Score = 39 (18.8 bits), Expect = 4.6e-52, Sum P(4) = 4.6e-52
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 886 PQ-KQFLNGQSVIATVMALPS 905
PQ KQF GQ V A V L S
Sbjct: 138 PQSKQFKVGQQVDAIVYGLTS 158
>FB|FBgn0039182 [details] [associations]
symbol:CG5728 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 EMBL:AE014297 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000381 InterPro:IPR022967
SMART:SM00316 eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
EMBL:AY061461 RefSeq:NP_651245.1 UniGene:Dm.1316 SMR:Q9VC94
STRING:Q9VC94 EnsemblMetazoa:FBtr0084632 GeneID:42899
KEGG:dme:Dmel_CG5728 UCSC:CG5728-RA FlyBase:FBgn0039182
InParanoid:Q9VC94 OMA:NEKSFPR OrthoDB:EOG4JQ2CH GenomeRNAi:42899
NextBio:831166 Uniprot:Q9VC94
Length = 1430
Score = 408 (148.7 bits), Expect = 8.3e-50, Sum P(3) = 8.3e-50
Identities = 85/263 (32%), Positives = 149/263 (56%)
Query: 1546 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1605
T D++ERLV + PN+S W+KY+AF+LS ++EKAR++A RA+ TI+ RE E N+W A
Sbjct: 1166 TIDQYERLVIAQPNNSISWLKYIAFLLSNTEIEKARALARRAISTISFRETQELRNMWSA 1225
Query: 1606 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1665
N+E Y N ++ V + AL DP +++++++ + ++ ++ +L ++ KF
Sbjct: 1226 LLNMELVYSNNFDD----VLKEALNCNDPLEIYISVVDILKKNKRKDRLSSVLTTVLNKF 1281
Query: 1666 KHSCKVWXXXXXXXX-XXXXEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1724
K +VW + V ++QRAL +LP +HI I A L K+ D +
Sbjct: 1282 KTELRVWPVAAEAYFWLGKSDQVHNLLQRALRALPNQEHIPCIVSFAKLYAKHDNNDMAQ 1341
Query: 1725 SMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXYLEY 1784
++ + +++ YPKR D+WS+Y+D I+ G +D R + ERA+ YL+
Sbjct: 1342 TLLDDVVTSYPKRIDIWSVYVDMLIKAGLIDSARNVLERAVVQKLKPNKMQVIYKKYLQL 1401
Query: 1785 EKSVGEEERIEYVKQKAMEYVES 1807
E++ G + + VKQ+A ++V++
Sbjct: 1402 EENHGTDATVAKVKQQAEQWVKN 1424
Score = 228 (85.3 bits), Expect = 8.3e-50, Sum P(3) = 8.3e-50
Identities = 173/803 (21%), Positives = 313/803 (38%)
Query: 51 EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMV 110
+ +E + L +F +G++V ++ + K + G+ + +++++G +
Sbjct: 121 DTSEYHDLTELFQLGRIVYGKAIKTE--KLDTGRVSLLLSLKPADVHGNLHHKSIKKGFI 178
Query: 111 LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVV 169
+ V +HGY++ G+ F+P A+ + L ++ V + T V
Sbjct: 179 FSGAVAEALEHGYVIESGVQGLQAFVPCEKPAQKLHVGQLAFLKVKTVHHDTHQSTCTCV 238
Query: 170 YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY-FTGTVDIFH 228
+ D + K ++D ++PG +V +V L++G+ S + F+ V+ H
Sbjct: 239 QVEQDQLRI-----KSQNETNLDYILPGSIVKFKVAKHLKDGLKGSIMNESFSAYVNEHH 293
Query: 229 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH--------- 279
L N T + Y ++ NAR+L+V P ++ V LTLN + A
Sbjct: 294 LANALDTLD---AYELNEDYNARVLYVMPLTKLVYLTLNLDIKTGAAVAKDQDEEEQEVE 350
Query: 280 -VKVGDIYDQSKXXXXXXXXXXXXXIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGS 336
+KVG + +++K + +Y +I + K E KY +
Sbjct: 351 PIKVGSVVEKAKVLRLGSGGVVLL-LNKKLKGIISYGSIRGNFKGNYDKDEVLSKYGRKT 409
Query: 337 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF--GAIVQFP 394
+VRILG+ +E L + +F D+ G +V K+ D G V+
Sbjct: 410 KHKVRILGYDVIESLYYCSDDPNVVNEKLFCLEDINAGDLVTAKIFKKDDKIKGWSVRI- 468
Query: 395 GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAIL 452
G V + + +F + P ++ VG L RVL V ++R V+++ + + IL
Sbjct: 469 GKVNGI-----LEQFYLA-PNVRYDVGQSLKCRVLEVNAERKICYVSNRAEYLGKGIKIL 522
Query: 453 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 512
+ YA A + G + + E V+F NG++G R L E SS + GQ K
Sbjct: 523 TDYASAHVGNVYMGTVVRCEDTYVLVKFGNGIKGVLHRQNLK-----ENSSFFE-GQTTK 576
Query: 513 CRIMSSIPASRRINL---SFMMK---PTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIA 566
RI++ + L F + P ++ +
Sbjct: 577 FRILTRNKDQITLTLPEDKFQLGEICPVEITNALDAGLEVKITFAAEDDEEDEDGNPKLE 636
Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
+ G IP L+DHLE V G D ++ N S L Y + Q
Sbjct: 637 EFV--GLIPLRLLSDHLELLHAQMRVHPAGSYTDAACIMQNIFS--LRDVPYF----SGQ 688
Query: 627 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF-APRSKAVDGQRADLSKTYYVG- 684
L D + ++ YV + T V + + + P V R + K V
Sbjct: 689 LTKDWQSVQVGDIIRSYVKHA--TDQVVDLMVCVRNYNKPVKVHVKMLRLNAVKNAPVEL 746
Query: 685 ---QSVRSNILDVNSETGRITLSLKQSCCSS---TDASFMQEHFLLEEKIAMLQSSKHNG 738
Q + +L ET +T+S K + S +D + + E +L E +A +++
Sbjct: 747 VPEQLLWVKVLSKEVETKTLTVSAKLTDVWSGDLSDTAKLVEGYLNE--VAQIKAGLEEA 804
Query: 739 SE--LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV-ESGSVI 795
S K+ G I V +G +ND+ V + E + V + + A E GS
Sbjct: 805 SAPISKYSVGEKINVVFKGIDATTNDW--VYTVEGNGKVSALLLSSLVGTAKAPEMGSKH 862
Query: 796 QAAILDVAKAERLVDLSLKTVFI 818
+A IL + + ++ +S K + I
Sbjct: 863 EAVILWIEYSSDVLLISNKKLDI 885
Score = 75 (31.5 bits), Expect = 3.5e-34, Sum P(3) = 3.5e-34
Identities = 34/179 (18%), Positives = 81/179 (45%)
Query: 1235 STDVDTPGKHLEKIEDLSPNMIVQGYV--KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1292
S D + + L +ED++ +V + K+ KG + + + ++ + + +
Sbjct: 428 SDDPNVVNEKLFCLEDINAGDLVTAKIFKKDDKIKGWSVRIGK-------VNGILEQFYL 480
Query: 1293 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1352
+P + +G+ + RVL V K V+ + ++ + + ++ HVG++ +G +
Sbjct: 481 APNVRYDVGQSLKCRVLEVNAERKICYVSNR-AEYLGKGIKILTDYASAHVGNVYMGTVV 539
Query: 1353 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
R E + + N + G+ H L E+ + + G+ K +IL +K++ ++L
Sbjct: 540 RCEDTYVLVKFGN-GIKGVLHRQNLKEN------SSFFEGQTTKFRILTRNKDQITLTL 591
Score = 74 (31.1 bits), Expect = 4.4e-34, Sum P(3) = 4.4e-34
Identities = 53/257 (20%), Positives = 112/257 (43%)
Query: 1169 LKNICVSDPLSGY-DE----GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1223
LK +++ S Y +E D L Y+ + +VL + + + L+L +L
Sbjct: 276 LKGSIMNESFSAYVNEHHLANALDTLDAYELNEDYNARVLYVMPLTKLVY---LTL--NL 330
Query: 1224 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1283
D T ++ ++ D D + +E I+ S ++ + V + S G ++L++KL +
Sbjct: 331 D--IKTGAA-VAKDQDEEEQEVEPIKVGS--VVEKAKVLRLGSGGVVLLLNKKLKGIISY 385
Query: 1284 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV-EVTLKTSDSRTASQSEINNLSNLH 1342
++ + + +K+ + K V L V E SD ++ L +++
Sbjct: 386 GSIRGNFKGNYDKDEVLSKYGRKTKHKVRILGYDVIESLYYCSDDPNVVNEKLFCLEDIN 445
Query: 1343 VGDIVIGQI-KRVESY-GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
GD+V +I K+ + G + I N G+ L+ N+ Y G+ +K ++L
Sbjct: 446 AGDLVTAKIFKKDDKIKGWSVRIGKVN--GILEQFYLAP----NVR--YDVGQSLKCRVL 497
Query: 1401 KVDKEKRRISLGMKSSY 1417
+V+ E++ + ++ Y
Sbjct: 498 EVNAERKICYVSNRAEY 514
Score = 73 (30.8 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV---------ESPEKE- 1297
++ L +M+V G VK +T+ I L ++ A+ L++++SD Y ++ E
Sbjct: 68 MDTLQEDMLVMGVVKELTATALQIALPGRMFARTLVADISDAYTRVAKAAMSGDTSEYHD 127
Query: 1298 ----FPIGKLVAGRVLSVEPLSK-RVEVTL 1322
F +G++V G+ + E L RV + L
Sbjct: 128 LTELFQLGRIVYGKAIKTEKLDTGRVSLLL 157
Score = 66 (28.3 bits), Expect = 4.6e-34, Sum P(4) = 4.6e-34
Identities = 43/190 (22%), Positives = 81/190 (42%)
Query: 985 NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE----IGSKLLFEECDVSIGQ 1040
NFK G +++K + K + + S+ S+ + KL E D++ G
Sbjct: 391 NFK-GNYDKDEVLSKYGRKTKHKVRILGYDVIESLYYCSDDPNVVNEKLFCLE-DINAGD 448
Query: 1041 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1100
VT ++K D++ ++ R K IL+ Y + R+ +G+++ VL +N
Sbjct: 449 LVTAKIFKKDDKIKGWSV-RIGKVN-GILEQFYLAPNV-----RYDVGQSLKCRVLEVNA 501
Query: 1101 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1160
E+K+ + R G K + I D H G++ G + + ++V+ G +
Sbjct: 502 ERKICYVSNRAEYLG---KGIKILTDYASA--HVGNVYMGTVVRCEDTY--VLVKFGNGI 554
Query: 1161 YGRVHFTELK 1170
G +H LK
Sbjct: 555 KGVLHRQNLK 564
Score = 60 (26.2 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 938 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
VG++ + + + +KFG G G +H + N+ EN S+F GQT RI+
Sbjct: 530 VGNVYMGTVVRCEDTYVLVKFGNGIKGVLH-------RQNLKEN--SSFFEGQTTKFRIL 580
Query: 998 AKSNK 1002
+ NK
Sbjct: 581 TR-NK 584
Score = 56 (24.8 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 1340 NLHVGDIVIGQIKRV--ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
++ VGDI+ +K + L + + N N HV L + V N + + V
Sbjct: 695 SVQVGDIIRSYVKHATDQVVDLMVCVRNYNKPVKVHVKMLRLNAVKNAPVELVPEQLLWV 754
Query: 1398 KILKVDKEKRRISLGMK 1414
K+L + E + +++ K
Sbjct: 755 KVLSKEVETKTLTVSAK 771
Score = 56 (24.8 bits), Expect = 4.6e-34, Sum P(4) = 4.6e-34
Identities = 26/100 (26%), Positives = 49/100 (49%)
Query: 1256 IVQGYVKNVTSKGCFIMLS-RKLD--AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
I++ YVK+ T + +M+ R + KV + L V++ E +L+ +VLS E
Sbjct: 701 IIRSYVKHATDQVVDLMVCVRNYNKPVKVHVKMLRLNAVKNAPVELVPEQLLWVKVLSKE 760
Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1352
+K + V+ K +D + S+ L ++ ++ QIK
Sbjct: 761 VETKTLTVSAKLTDVWSGDLSDTAKLVEGYLNEVA--QIK 798
Score = 40 (19.1 bits), Expect = 3.5e-34, Sum P(3) = 3.5e-34
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 856 VKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNG--QSVIATVM--ALPSSSTAGR 911
VKEN L E N + S N + + G + + AT + ALP A
Sbjct: 42 VKENLLSYETEEQNGQLEAFSAETLNMDTLQEDMLVMGVVKELTATALQIALPGRMFART 101
Query: 912 LL 913
L+
Sbjct: 102 LV 103
Score = 38 (18.4 bits), Expect = 5.4e-11, Sum P(3) = 5.4e-11
Identities = 7/52 (13%), Positives = 27/52 (51%)
Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
++ L + + S ++ ++ + N+++ + D+V KR++ + +++
Sbjct: 1311 ALRALPNQEHIPCIVSFAKLYAKHDNNDMAQTLLDDVVTSYPKRIDIWSVYV 1362
Score = 37 (18.1 bits), Expect = 8.3e-50, Sum P(3) = 8.3e-50
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 975 KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSF 1009
K+ VVE + + K Q +T I+ + K + K F
Sbjct: 1035 KAEVVEKITNGQKKTQPLTNGIVKEKPKQNGKLFF 1069
>DICTYBASE|DDB_G0286941 [details] [associations]
symbol:DDB_G0286941 species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
dictyBase:DDB_G0286941 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000092
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 RefSeq:XP_637477.1
ProteinModelPortal:Q54L26 EnsemblProtists:DDB0187202 GeneID:8625876
KEGG:ddi:DDB_G0286941 InParanoid:Q54L26 OMA:IEPLEMI Uniprot:Q54L26
Length = 804
Score = 430 (156.4 bits), Expect = 1.4e-36, P = 1.4e-36
Identities = 128/482 (26%), Positives = 220/482 (45%)
Query: 61 IFHVGQLVSCIVLQLDDDKKEIGKRKIWXXXXXXXXXXXXXXETVQEGMVLTAYVKSIED 120
+F+ GQ++ C ++ L D G + +T E M + ++SI+D
Sbjct: 234 MFYKGQMLKCAIVGLTDHHTIEG---LHCTLRPELVNVGSSIDTFSEDMTIHGCIESIQD 290
Query: 121 HGYILHFGLPSFTGFLPRNNLA----ENSGIDVKP---GLLLQGVVRSIDRTRKVVYLSS 173
GYI+ FG + GFL +N + S D G ++ +++SID++ K L+
Sbjct: 291 KGYIVSFGSKDYNGFLEFSNTCYYYPDQSSDDQNQLYIGQPIESLIQSIDKSTKTFKLTI 350
Query: 174 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
VS+ K+ + I+++ + GM+V T+V +L NG+ L FL +F G + I H QN
Sbjct: 351 SHPLVSRSTIKNSETITMESIKAGMLVETKVLRVLSNGLHLGFLDFFAGDIFILHSQNPI 410
Query: 234 PTTNWKNDYNQHKKVNARILFVDPTSRAVGL-TLN------PYLLHNRAPPSHVKVGDIY 286
T Y +++ V ARILFVD + +GL TL PY P +V+ G +
Sbjct: 411 ET------YKENQGVKARILFVDQVHKRIGLSTLGHVLGFKPYPFGTTKPGQYVESGKLT 464
Query: 287 DQSKXXXXXXXXXXXXXIPSTPVSTP----AYVTISDVAE--EEVRKLEKKYKEGSCV-- 338
+ + S P+ P Y+ I ++ ++ K ++K+ +
Sbjct: 465 IERIEPLEMIVTTESTVVQSNPMKAPLLLRGYIHIEELESGVNDLTKASNQFKKTEPLEK 524
Query: 339 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 398
R R+ HL+G+ T + E ++++D+ GMVV+G + V + V+ +
Sbjct: 525 RCRVKHLDHLDGMVTYTARTRELEKKFYSYNDLSCGMVVQGVIRYVRADSLEVELATSIH 584
Query: 399 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYA 456
+ HM++ I P + FKVGA + R++ V+ KR+ +T KK+L+ S+ I++
Sbjct: 585 GVVARHHMADTNITDPLEFFKVGATVKVRIINVEPDKKRLQLTLKKSLIYSEYPIITDKN 644
Query: 457 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 516
I+HG ITK + FV FYN G L + VG+ V + +
Sbjct: 645 TTPIGTISHGIITKTTRFLVFVSFYNNSFGVVEAQNLSNSKIESVQKQFPVGRTVLAKTL 704
Query: 517 SS 518
S
Sbjct: 705 FS 706
Score = 159 (61.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 51/223 (22%), Positives = 98/223 (43%)
Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
K DLS M+VQG ++ V + + L+ + V +++D + P + F +G
Sbjct: 549 KKFYSYNDLSCGMVVQGVIRYVRADSLEVELATSIHGVVARHHMADTNITDPLEFFKVGA 608
Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
V R+++VEP KR+++TLK S + I + + +G I G I + + +F++
Sbjct: 609 TVKVRIINVEPDKKRLQLTLKKS-LIYSEYPIITDKNTTPIGTISHGIITKTTRFLVFVS 667
Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
N N G+ LS +++++ + G V K L + K + L + + +D
Sbjct: 668 FYN-NSFGVVEAQNLSNSKIESVQKQFPVGRTVLAKTLFSESSKSQPGLPL-TLVIDDDD 725
Query: 1423 DNLQMXXXXXXXXXXXXXXXYNRSSLLENSSVAVQDMDMESED 1465
N Q N+ +EN V + ++ E ++
Sbjct: 726 FNSQPQPNSNKKSNNSNNKKENKK--VENKKVEEEKVEEEGKE 766
Score = 72 (30.4 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 55/268 (20%), Positives = 111/268 (41%)
Query: 939 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD-----KSNVV---ENLFS-NFKIG 989
G +V A ++ +++ + G G + E++D K + EN S NF+
Sbjct: 165 GMVVLATFEQVTEMDITISLPFGLKGYVKFNEISDSFTEWMKETLKREDENEKSTNFRKM 224
Query: 990 QTVTARIIAKSNKPDMKKSFLWELS----IKPSMLTVS----EIGSKL-LFEECDVSIGQ 1040
+ ++ ++ K M K + L+ I+ T+ +GS + F E D++I
Sbjct: 225 KIISDQVRKMFYKGQMLKCAIVGLTDHHTIEGLHCTLRPELVNVGSSIDTFSE-DMTIH- 282
Query: 1041 RVTGYVYKVDNEWALLTI-SRHLKAQLFILDSAYE-PSELQEFQRRFHIGKAVTGHVLSI 1098
G + + ++ +++ S+ L ++ Y P + + Q + +IG+ + + SI
Sbjct: 283 ---GCIESIQDKGYIVSFGSKDYNGFLEFSNTCYYYPDQSSDDQNQLYIGQPIESLIQSI 339
Query: 1099 NKEKKLLRLVL-RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1157
+K K +L + P +S T+ S I G +V ++ ++LS GL +
Sbjct: 340 DKSTKTFKLTISHPL---VSRSTIKNSETITMESIKAGMLVETKVLRVLSN--GLHLGFL 394
Query: 1158 PHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
G + +N P+ Y E Q
Sbjct: 395 DFFAGDIFILHSQN-----PIETYKENQ 417
Score = 56 (24.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 47/169 (27%), Positives = 69/169 (40%)
Query: 651 GCF--VRFLGRLTGFAPRSKAVDGQRADLSKT--YYVGQSVRSNILDVNS-ETGRITLSL 705
GC ++ G + F SK +G + S T YY QS S+ D N G+ SL
Sbjct: 283 GCIESIQDKGYIVSFG--SKDYNGF-LEFSNTCYYYPDQS--SD--DQNQLYIGQPIESL 335
Query: 706 KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 765
QS ST F L ++ S SE +E G ++E KV G+
Sbjct: 336 IQSIDKSTKT------FKLTISHPLVSRSTIKNSETITMESIKAGMLVETKVLRVLSNGL 389
Query: 766 VVSFEEH--SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
+ F + D+ FI H Q T + ++A IL V + + + LS
Sbjct: 390 HLGFLDFFAGDI--FILHSQNPIETYKENQGVKARILFVDQVHKRIGLS 436
Score = 43 (20.2 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 43/223 (19%), Positives = 86/223 (38%)
Query: 320 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGL-VFTHSDVKPGMVVK 378
+ ++VRK+ K + C V + +EGL + G + T S+ M +
Sbjct: 226 IISDQVRKMFYKGQMLKCAIVGLTDHHTIEGLHCTLRPELVNVGSSIDTFSE---DMTIH 282
Query: 379 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK------KFKVGAELVFRVLGV- 431
G + ++ G IV F G K S P + + +G + + +
Sbjct: 283 GCIESIQDKGYIVSF--GSKDYNGFLEFSNTCYYYPDQSSDDQNQLYIGQPIESLIQSID 340
Query: 432 ---KSKRITVTH---KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
K+ ++T++H ++ +K+ I +A ++ + ++ +G + F +
Sbjct: 341 KSTKTFKLTISHPLVSRSTIKNSETITMESIKAG--MLVETKVLRVLSNGLHLGFLDFFA 398
Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
G ++ + P Y Q VK RI+ +RI LS
Sbjct: 399 G-----DIFILHSQNPIETYKENQGVKARILFVDQVHKRIGLS 436
Score = 42 (19.8 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 718 MQEHFLLEEKIAMLQSSKHN-GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 776
+ +H +E L+ N GS ++ F I G + D G +VSF D
Sbjct: 248 LTDHHTIEGLHCTLRPELVNVGSS---IDTFSEDMTIHGCIESIQDKGYIVSFGS-KDYN 303
Query: 777 GFI 779
GF+
Sbjct: 304 GFL 306
Score = 37 (18.1 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
D+ GMVV V + P G+K +S+
Sbjct: 161 DLHTGMVVLATFEQVTEMDITISLPFGLKGYVKFNEISD 199
>TIGR_CMR|SO_2402 [details] [associations]
symbol:SO_2402 "ribosomal protein S1" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000044052
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
RefSeq:NP_717992.1 ProteinModelPortal:Q8EEI0 SMR:Q8EEI0
GeneID:1170119 KEGG:son:SO_2402 PATRIC:23524423 Uniprot:Q8EEI0
Length = 555
Score = 190 (71.9 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 84/344 (24%), Positives = 140/344 (40%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
+++ G VKG V + +GA V GGV L + M+ + P + VG E+ +VL
Sbjct: 188 NLQEGQAVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246
Query: 430 GVKSKRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
+R V+ K L + L I Y E T +T G +T + +GCFV GV+G
Sbjct: 247 KYDRERTRVSLGLKQLGEDPWLEISKRYPENTK--LT-GRVTNLTDYGCFVEIEEGVEGL 303
Query: 488 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXX 546
SE+ + PS + ++G V+ ++ RRI+L T +D
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYNK 363
Query: 547 XXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 604
G G + HL+D + T +V K G E +++
Sbjct: 364 GDKVSGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNGTGEDAVSEYKKGDEIHAVVL 420
Query: 605 -LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
+D E + L K + + +D ++VHG V + G V + G+
Sbjct: 421 SVDPERERISLGVKQTEDDPFNAYLADKKK---GTIVHGTVSAVDAKGVTVELADTVEGY 477
Query: 664 APRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
R + +R D S Y VG ++ + + V+ + I+LS+K
Sbjct: 478 I-RVADISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIK 520
Score = 189 (71.6 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 48/172 (27%), Positives = 96/172 (55%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
V G +K++T G FI L +D V LS++S +G E E+ G + VLSV+P
Sbjct: 367 VSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPER 426
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
+R+ + +K ++ + L++ G IV G + V++ G+ + + +T + G V+
Sbjct: 427 ERISLGVKQTEDDPFNAY----LADKKKGTIVHGTVSAVDAKGVTVELADT-VEGYIRVA 481
Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
++S + +++ T+Y G+ ++ K + VD++ R ISL +K+ K++A+ ++
Sbjct: 482 DISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIKA---KDEAEEKEV 530
Score = 171 (65.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 47/165 (28%), Positives = 85/165 (51%)
Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVE 1312
N + G V N+T GCF+ + ++ V +S + P K +G V VL ++
Sbjct: 277 NTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDID 336
Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
+R+ + LK +T + N GD V G+IK + +G+FI ++ + GL
Sbjct: 337 EERRRISLGLK--QCKTNPWDDFATRYNK--GDKVSGKIKSITDFGIFIGLDG-GIDGLV 391
Query: 1373 HVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
H+S++S + ++ + Y+ G+++ +L VD E+ RISLG+K +
Sbjct: 392 HLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERERISLGVKQT 436
Score = 165 (63.1 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 49/169 (28%), Positives = 86/169 (50%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+E+L V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 186 LENLQEGQAVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEIVNVGDEINVK 244
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
VL + RV + LK + N + G++ + YG F+ IE
Sbjct: 245 VLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKL----TGRVTNLTDYGCFVEIEE-G 299
Query: 1368 LVGLCHVSELSEDHVDNIET--IYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ GL HVSE+ + NI + G++V+V +L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLK 347
Score = 157 (60.3 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 61/206 (29%), Positives = 95/206 (46%)
Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI-EDLSPNM-IVQGYVKN---VTSKGC 1269
V+++L S DG T S LEK ED + I+ G VK V G
Sbjct: 68 VDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELNGI 127
Query: 1270 FIMLSRKL-DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
L L D + + ++E E EF + KL R V +S+R + ++S R
Sbjct: 128 RAFLPGSLVDVRPVRDT---AHLEYKELEFKVIKLDQKRNNVV--VSRRAVIESESSAER 182
Query: 1329 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
A L NL G V G +K + YG F+ + + GL H+++++ V + I
Sbjct: 183 DAL------LENLQEGQAVKGIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEI 234
Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMK 1414
G+++ VK+LK D+E+ R+SLG+K
Sbjct: 235 VNVGDEINVKVLKYDRERTRVSLGLK 260
Score = 133 (51.9 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 79/361 (21%), Positives = 152/361 (42%)
Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
A FE + T + +PG +V+G V+A+++ +V G+K+ P+P +F+ + +
Sbjct: 6 ADLFEQSLQT-LEFRPGSIVRGTVVAIEN--GMVLVDAGLKSESPIP-AEQFKNAQGVLE 61
Query: 418 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 475
VG E+ + V+ ++ +K +L E + +I G I K G
Sbjct: 62 IAVGDEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVI--GIINGKVKGG 119
Query: 476 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMM 531
V NG++ F P S + + P + + + + +V+K + +++ SRR + +
Sbjct: 120 FTVEL-NGIRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRR---AVIE 175
Query: 532 KPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATVMK 590
+ D + G G + +A ++H +
Sbjct: 176 SESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPS--- 232
Query: 591 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNII 648
++ G E + ++L D E + + L K + L + S +P N+ + G V N+
Sbjct: 233 EIVNVGDEINVKVLKYDRERTRVSLGLKQ--LGEDPWL--EISKRYPENTKLTGRVTNLT 288
Query: 649 ETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLK 706
+ GCFV + G S+ +D ++ SK +G V +LD++ E RI+L LK
Sbjct: 289 DYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLK 347
Query: 707 Q 707
Q
Sbjct: 348 Q 348
Score = 103 (41.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 68/342 (19%), Positives = 129/342 (37%)
Query: 376 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
++ GKV G V+ G++A P + + V+ + EL F+V+ + KR
Sbjct: 111 IINGKVKG----GFTVEL-NGIRAFLP-GSLVDVRPVRDTAHLEY-KELEFKVIKLDQKR 163
Query: 436 ITVT-HKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 489
V ++ +++S+ A+L + E G + + +G FV GV G
Sbjct: 164 NNVVVSRRAVIESESSAERDALLENLQEGQ---AVKGIVKNLTDYGAFVDL-GGVDGLLH 219
Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDXXXXXXXXX 548
+++ PS + +VG + +++ R++L + E
Sbjct: 220 ITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTK 279
Query: 549 XXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDN 607
I +G +G + + D V+ G E + L++ +D
Sbjct: 280 LTGRVTNLTDYGCFVEIEEGV-EGLVHVSEM-DWTNKNIHPSKVVNLGDEVEVLVLDIDE 337
Query: 608 ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 667
E + L K N A+ + V G + +I + G F+ G + G S
Sbjct: 338 ERRRISLGLKQCKTNPWDDF---ATRYNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLS 394
Query: 668 K-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
+ +G D Y G + + +L V+ E RI+L +KQ+
Sbjct: 395 DISWNGTGEDAVSEYKKGDEIHAVVLSVDPERERISLGVKQT 436
Score = 80 (33.2 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 17/88 (19%), Positives = 43/88 (48%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+ D IV G V V +KG + L+ ++ + ++++S +E + +G + +
Sbjct: 445 LADKKKGTIVHGTVSAVDAKGVTVELADTVEGYIRVADISRERIEDASTVYSVGDAIEAK 504
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEI 1335
+ V+ ++ + +++K D A + E+
Sbjct: 505 FMGVDRKNRSISLSIKAKDE--AEEKEV 530
Score = 71 (30.1 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 34/186 (18%), Positives = 83/186 (44%)
Query: 936 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 995
Y+ G V +I I + + G G +H+++++ + + E+ S +K G + A
Sbjct: 361 YNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTG--EDAVSEYKKGDEIHAV 418
Query: 996 IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1055
++ S P+ ++ L +K T + + L D G V G V VD +
Sbjct: 419 VL--SVDPERERI---SLGVKQ---TEDDPFNAYL---ADKKKGTIVHGTVSAVDAKGVT 467
Query: 1056 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1115
+ ++ ++ + + D + E +++ + +G A+ + ++++ + + L ++ +D
Sbjct: 468 VELADTVEGYIRVADISRE--RIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIKA-KDE 524
Query: 1116 ISDKTV 1121
+K V
Sbjct: 525 AEEKEV 530
Score = 58 (25.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 750 GSVIEGKVHESNDFGVVVSFEEHSDVY---GFITHHQLAGA-TVES-GSVIQAAILDVAK 804
G+++ G V + GV V + + Y I+ ++ A TV S G I+A + V +
Sbjct: 451 GTIVHGTVSAVDAKGVTVELADTVEGYIRVADISRERIEDASTVYSVGDAIEAKFMGVDR 510
Query: 805 AERLVDLSLK 814
R + LS+K
Sbjct: 511 KNRSISLSIK 520
Score = 54 (24.1 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 16/68 (23%), Positives = 27/68 (39%)
Query: 753 IEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 806
+ G+V D+G V EE H + + V G ++ +LD+ +
Sbjct: 280 LTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEER 339
Query: 807 RLVDLSLK 814
R + L LK
Sbjct: 340 RRISLGLK 347
Score = 51 (23.0 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 20/79 (25%), Positives = 31/79 (39%)
Query: 750 GSVIEGKVHESNDFGVVVSFEE------H-SDVYGFITHHQLAGATVESGSVIQAAILDV 802
G + GK+ DFG+ + + H SD+ T A + + G I A +L V
Sbjct: 364 GDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGED-AVSEYKKGDEIHAVVLSV 422
Query: 803 AKAERLVDLSLKTVFIDRF 821
+ L +K D F
Sbjct: 423 DPERERISLGVKQTEDDPF 441
Score = 39 (18.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 792 GSVIQAAILDVAKAERLVDLSLKT 815
GS+++ ++ + LVD LK+
Sbjct: 21 GSIVRGTVVAIENGMVLVDAGLKS 44
>UNIPROTKB|P0AG67 [details] [associations]
symbol:rpsA "30S ribosomal subunit protein S1"
species:83333 "Escherichia coli K-12" [GO:2000766 "negative
regulation of cytoplasmic translation" evidence=IEP;IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006412
"translation" evidence=IMP] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003729 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 PDB:2BH8 PDBsum:2BH8 GO:GO:0022627
GO:GO:2000766 EMBL:X04864 EMBL:X00785 EMBL:V00352 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 EMBL:V00342 PIR:F64830 RefSeq:NP_415431.1
RefSeq:YP_489183.1 PDB:2KHI PDB:2KHJ PDBsum:2KHI PDBsum:2KHJ
ProteinModelPortal:P0AG67 SMR:P0AG67 DIP:DIP-35884N IntAct:P0AG67
MINT:MINT-1315122 PhosSite:P010447 SWISS-2DPAGE:P0AG67 PaxDb:P0AG67
PRIDE:P0AG67 EnsemblBacteria:EBESCT00000004097
EnsemblBacteria:EBESCT00000004098 EnsemblBacteria:EBESCT00000004099
EnsemblBacteria:EBESCT00000017224 GeneID:12934066 GeneID:945536
KEGG:ecj:Y75_p0883 KEGG:eco:b0911 PATRIC:32117035 EchoBASE:EB0893
EcoGene:EG10900 BioCyc:EcoCyc:EG10900-MONOMER
BioCyc:ECOL316407:JW0894-MONOMER EvolutionaryTrace:P0AG67
Genevestigator:P0AG67 Uniprot:P0AG67
Length = 557
Score = 185 (70.2 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 90/355 (25%), Positives = 160/355 (45%)
Query: 1073 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1132
+E S L+E + R G V G V++I+K+ L+ L+ + I + N + I
Sbjct: 9 FEES-LKEIETR--PGSIVRGVVVAIDKDVVLVDAGLKS-ESAIPAE--QFKNAQGELEI 62
Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI----CVSDPLSGYDEGQFD- 1187
GD V + + G G ++ T K V+ ++G +G F
Sbjct: 63 QVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTV 122
Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVE---LSLRS-SLDGMSSTN--SSDLSTDVDTP 1241
L+G F+ ++++ R VR T H+E L + LD + S + +
Sbjct: 123 ELNGIRA--FLPGSLVDV-RPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENS 179
Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
+ + +E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G
Sbjct: 180 AERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEIVNVG 238
Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
+ +VL + RV + LK + + G + G++ + YG F+
Sbjct: 239 DEITVKVLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFV 294
Query: 1362 TIENTNLVGLCHVSELSEDHVDNIET--IYRAGEKVKVKILKVDKEKRRISLGMK 1414
IE + GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 295 EIEE-GVEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
Score = 178 (67.7 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 49/160 (30%), Positives = 86/160 (53%)
Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1317
G V N+T GCF+ + ++ V +S + P K +G +V VL ++ +R
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRR 341
Query: 1318 VEVTLKTSDSRTASQ-SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
+ + LK + Q +E +N GD V G+IK + +G+FI ++ + GL H+S+
Sbjct: 342 ISLGLKQCKANPWQQFAETHNK-----GDRVEGKIKSITDFGIFIGLDG-GIDGLVHLSD 395
Query: 1377 LSEDHVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMK 1414
+S + V E + Y+ G+++ +L+VD E+ RISLG+K
Sbjct: 396 ISWN-VAGEEAVREYKKGDEIAAVVLQVDAERERISLGVK 434
Score = 171 (65.3 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 82/343 (23%), Positives = 139/343 (40%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
+++ GM VKG V + +GA V GGV L + M+ + P + VG E+ +VL
Sbjct: 188 NLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 246
Query: 430 GVKSKRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
+R V+ K L + +AI Y E T +T G +T + +GCFV GV+G
Sbjct: 247 KFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTK--LT-GRVTNLTDYGCFVEIEEGVEGL 303
Query: 488 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXX 546
SE+ + PS + +VG VV+ ++ RRI+L +K + +
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLG--LKQCKANP-WQQFAET 360
Query: 547 XXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV 604
I G G HL+D + ++V K G E +++
Sbjct: 361 HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVL 420
Query: 605 -LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
+D E + L K + + + ++V G V + G V + G+
Sbjct: 421 QVDAERERISLGVKQL---AEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGY 477
Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
S+A + D + VG V + V+ + I+LS++
Sbjct: 478 LRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 520
Score = 166 (63.5 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 49/169 (28%), Positives = 88/169 (52%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1315
V+G +K++T G FI L +D V LS++S E +E+ G +A VL V+
Sbjct: 367 VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
+R+ + +K ++ NN L+ G IV G++ V++ G + + + + G
Sbjct: 427 ERISLGVKQ-----LAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRA 480
Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
SE S D V++ + G++V+ K VD++ R ISL +++ K++AD
Sbjct: 481 SEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRA---KDEAD 526
Score = 92 (37.4 bits), Expect = 2.7e-15, Sum P(4) = 2.7e-15
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 642 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETG 699
G V N+ + GCFV + G S+ +D ++ SK VG V +LD++ E
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR 340
Query: 700 RITLSLKQSCCSSTDASFMQEH 721
RI+L LKQ C ++ F + H
Sbjct: 341 RISLGLKQ-CKANPWQQFAETH 361
Score = 79 (32.9 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 29/112 (25%), Positives = 53/112 (47%)
Query: 598 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVR 655
EF +++ LD + +N+++S + ++I S D ++ V G V N+ + G FV
Sbjct: 153 EF-KVIKLDQKRNNVVVSRR-AVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVD 210
Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
LG + G + + S+ VG + +L + E R++L LKQ
Sbjct: 211 -LGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQ 261
Score = 76 (31.8 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 31/131 (23%), Positives = 62/131 (47%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 430 GVKS---KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
V+ + + K ++ + + +Y +A +T G I K G V NG++
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDA--ETVT-GVINGKVKGGFTVEL-NGIRA 129
Query: 487 FAPRSELGLDP 497
F P S + + P
Sbjct: 130 FLPGSLVDVRP 140
Score = 69 (29.3 bits), Expect = 2.7e-15, Sum P(4) = 2.7e-15
Identities = 33/155 (21%), Positives = 64/155 (41%)
Query: 376 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
V+ GKV G V+ G++A P + + V+ + G EL F+V+ + KR
Sbjct: 111 VINGKVKG----GFTVEL-NGIRAFLP-GSLVDVRPVRDTLHLE-GKELEFKVIKLDQKR 163
Query: 436 --ITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 492
+ V+ + + A E + + G + + +G FV GV G ++
Sbjct: 164 NNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITD 222
Query: 493 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
+ PS + +VG + +++ R++L
Sbjct: 223 MAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Score = 65 (27.9 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 750 GSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVA 803
G+ + G+V D+G V EE H + + V G V++ +LD+
Sbjct: 277 GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDID 336
Query: 804 KAERLVDLSLK 814
+ R + L LK
Sbjct: 337 EERRRISLGLK 347
Score = 60 (26.2 bits), Expect = 5.0e-06, Sum P(5) = 5.0e-06
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 750 GSVIEGKVHESNDFGVVVSFEEHSD--VYGFITHHQLAGATV----ESGSVIQAAILDV- 802
G +EGK+ DFG+ + + D V+ +AG + G I A +L V
Sbjct: 364 GDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVD 423
Query: 803 AKAERLVDLSLKTVFIDRF 821
A+ ER + L +K + D F
Sbjct: 424 AERER-ISLGVKQLAEDPF 441
Score = 57 (25.1 bits), Expect = 5.0e-06, Sum P(5) = 5.0e-06
Identities = 21/92 (22%), Positives = 39/92 (42%)
Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
IV G V V +KG + L+ ++ + S S VE +G V + V+ +
Sbjct: 453 IVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKN 512
Query: 1316 KRVEVTLKTSDSR-------TASQSEINNLSN 1340
+ + ++++ D T ++ E N SN
Sbjct: 513 RAISLSVRAKDEADEKDAIATVNKQEDANFSN 544
Score = 47 (21.6 bits), Expect = 2.7e-15, Sum P(4) = 2.7e-15
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 147 IDVKPGLLLQGVVRSIDR 164
I+ +PG +++GVV +ID+
Sbjct: 16 IETRPGSIVRGVVVAIDK 33
Score = 47 (21.6 bits), Expect = 0.00037, Sum P(4) = 0.00037
Identities = 30/184 (16%), Positives = 79/184 (42%)
Query: 936 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 995
++ G V+ +I I + + G G +H+++++ + + E +K G + A
Sbjct: 361 HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAG--EEAVREYKKGDEIAAV 418
Query: 996 IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1055
++ + D ++ + L +K L + + + G VTG V VD + A
Sbjct: 419 VL----QVDAERERI-SLGVK--QLAEDPFNNWVALNKK----GAIVTGKVTAVDAKGAT 467
Query: 1056 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1115
+ ++ ++ L +++ + +++ +G V ++++ + + L +R +D
Sbjct: 468 VELADGVEGYLRASEASRD--RVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRA-KDE 524
Query: 1116 ISDK 1119
+K
Sbjct: 525 ADEK 528
Score = 46 (21.3 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 42/246 (17%), Positives = 87/246 (35%)
Query: 768 SFEEHSDVYGFITHHQLAGATVESGSV---IQAAILDVAKAERLV-----DLSLKTVFID 819
++E+ V G I G TVE + + +++DV + +L K + +D
Sbjct: 101 AYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLD 160
Query: 820 RFREAXXXXXXXXXXXXXXXXXDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI------G 873
+ R D Q + + E ++ +V +L +Y + G
Sbjct: 161 QKRNNVVVSRRAVIESENSAERD----QLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDG 216
Query: 874 YASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIXXXXXXXXXXXX 931
++D + K P + G + V+ T R+ L LK +
Sbjct: 217 LLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERT--RVSLGLKQLGEDPWVAIAKR- 273
Query: 932 XXXXYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 991
Y G+ + +T + ++ G G +H++E++ N+ + N +G
Sbjct: 274 ----YPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVN--VGDV 327
Query: 992 VTARII 997
V ++
Sbjct: 328 VEVMVL 333
Score = 41 (19.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 792 GSVIQAAILDVAKAERLVDLSLKT 815
GS+++ ++ + K LVD LK+
Sbjct: 21 GSIVRGVVVAIDKDVVLVDAGLKS 44
Score = 39 (18.8 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 971 VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1030
+ + S + L N + G V I K N D +F+ +L +L ++++ K +
Sbjct: 174 IESENSAERDQLLENLQEGMEVKG--IVK-NLTDYG-AFV-DLGGVDGLLHITDMAWKRV 228
Query: 1031 FEECD-VSIGQRVTGYVYKVDNE 1052
+ V++G +T V K D E
Sbjct: 229 KHPSEIVNVGDEITVKVLKFDRE 251
Score = 39 (18.8 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 24/103 (23%), Positives = 46/103 (44%)
Query: 961 GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSF-LWELSIKPSM 1019
G G +HIT++ + V++ +G +T +++ K ++ + S L +L P +
Sbjct: 213 GVDGLLHITDMAWKR---VKHPSEIVNVGDEITVKVL-KFDRERTRVSLGLKQLGEDPWV 268
Query: 1020 LTVSEI--GSKL------LFEE-CDVSIGQRVTGYVYKVDNEW 1053
G+KL L + C V I + V G V+ + +W
Sbjct: 269 AIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW 311
>TIGR_CMR|BA_1519 [details] [associations]
symbol:BA_1519 "ribosomal protein S1" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 KO:K02945 HOGENOM:HOG000044053 ProtClustDB:PRK06676
RefSeq:NP_843970.1 RefSeq:YP_018142.1 RefSeq:YP_027677.1
ProteinModelPortal:Q81SX5 DNASU:1083667
EnsemblBacteria:EBBACT00000012330 EnsemblBacteria:EBBACT00000016288
EnsemblBacteria:EBBACT00000024070 GeneID:1083667 GeneID:2817299
GeneID:2849711 KEGG:ban:BA_1519 KEGG:bar:GBAA_1519 KEGG:bat:BAS1408
OMA:DMMEEIN BioCyc:BANT260799:GJAJ-1482-MONOMER
BioCyc:BANT261594:GJ7F-1544-MONOMER Uniprot:Q81SX5
Length = 382
Score = 221 (82.9 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 57/186 (30%), Positives = 101/186 (54%)
Query: 1237 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1296
+++ K E I L +V+G V+ +T G F+ + +D V +S +S VE P +
Sbjct: 172 ELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGG-VDGLVHISQISHERVEQPSE 230
Query: 1297 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVE 1355
G+ V +VLSV+ ++R+ +++K A N+ + GDI G +KR+
Sbjct: 231 VLEQGQKVKVKVLSVDADTQRISLSIKA-----AQPGPWENVGGEVKAGDIREGVVKRLV 285
Query: 1356 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
++G F+ I + GL HVS+++ HV N + G++VKVK+L+V ++RISL +K
Sbjct: 286 TFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKE 344
Query: 1416 SYFKND 1421
+ +N+
Sbjct: 345 ALEENN 350
Score = 173 (66.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 47/179 (26%), Positives = 91/179 (50%)
Query: 1238 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1297
VD +E E + + VK++ + G + L + + S + YVE +
Sbjct: 87 VDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLVVDLGVR--GFIPASLVEVHYVED-FTD 143
Query: 1298 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1357
+ GK +A +++ ++ RV ++ K + +S+L GD+V G ++R+ +
Sbjct: 144 YK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDF 202
Query: 1358 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
G F+ + + GL H+S++S + V+ + G+KVKVK+L VD + +RISL +K++
Sbjct: 203 GAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 146 (56.5 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 48/175 (27%), Positives = 84/175 (48%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
S +K G VV+G V + FGA V GGV L + +S + +P + + G ++ +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242
Query: 429 LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
L V + +RI+++ K + +A D I G + ++ G FV GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299
Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM--MKPTRVSED 539
S++ P+ + +GQ VK +++ A +RI+LS ++ V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354
Score = 63 (27.2 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 35/141 (24%), Positives = 59/141 (41%)
Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
++ +G VTG V KV+ + L+ + + D SEL HI KA
Sbjct: 14 ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELANV----HIEKA--SD 60
Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
V+ +++ +L + L +S + VD +Q + G + + I++G GL
Sbjct: 61 VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118
Query: 1153 VVQIG-----PHLYGRVHFTE 1168
VV +G P VH+ E
Sbjct: 119 VVDLGVRGFIPASLVEVHYVE 139
Score = 38 (18.4 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 1083 RRFHIGKAVTGHVLSINKEKKLL 1105
+ +G VTG V + +EK++L
Sbjct: 13 KELQVGDVVTGSVTKV-EEKQVL 34
Score = 37 (18.1 bits), Expect = 8.7e-14, Sum P(2) = 8.7e-14
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 791 SGSVIQAAILDVAKAERLVDLSLK 814
SG V + D+ +VDL ++
Sbjct: 102 SGHVFDVTVKDIVNGGLVVDLGVR 125
>TIGR_CMR|SPO_0802 [details] [associations]
symbol:SPO_0802 "ribosomal protein S1" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 OMA:SRRYPQG
RefSeq:YP_166055.1 ProteinModelPortal:Q5LVA0 SMR:Q5LVA0
GeneID:3195039 KEGG:sil:SPO0802 PATRIC:23374881 Uniprot:Q5LVA0
Length = 558
Score = 163 (62.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 48/174 (27%), Positives = 88/174 (50%)
Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
E I +L+ V G VKN+T G F+ L +D + +++++ V P + IG+ V
Sbjct: 188 EVIGNLTEGQTVDGVVKNITEYGAFVDLGG-VDGLLHVTDMAWRRVNHPNEILNIGETVK 246
Query: 1306 GRVLSVEPLSKRVEVTLKT-SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
+V+ + + R+ + +K + L ++H G ++ + YG F+ +E
Sbjct: 247 VQVIKINKDTHRISLGMKQLQEDPWDLVGAKYPLESVHTG-----RVTNITDYGAFVELE 301
Query: 1365 NTNLVGLCHVSELSEDHVDNIET--IYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ GL HVSE+S N+ I ++V+V +L++D KRR+SLG+K +
Sbjct: 302 -PGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVEVMVLEIDGAKRRVSLGLKQT 353
Score = 158 (60.7 bits), Expect = 3.2e-16, Sum P(4) = 3.2e-16
Identities = 52/195 (26%), Positives = 89/195 (45%)
Query: 1223 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN-MIVQGYVKNVTSKGCFIMLSRKLDAKV 1281
+DG S L + P E + P +V+G VKN+T G FI L +D V
Sbjct: 339 IDGAKRRVSLGLKQTMRNPW---EVFAETHPEGTVVEGEVKNITEFGLFIGLPGDIDGMV 395
Query: 1282 LLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1340
LS+LS D E + + G +V V V+ +R+ +++K+ +++ +
Sbjct: 396 HLSDLSWDERGEDAIQNYRKGDMVKAVVSEVDIDKERISLSIKSVGGDKFAEA----VGG 451
Query: 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
+ G I+ + +E G I +E + S+LS D D + G+KV V++
Sbjct: 452 VKRGSIITVNVTAIEDGG--IEVEYEGMKSFIRRSDLSRDRADQRPERFSVGDKVDVRVT 509
Query: 1401 KVDKEKRRISLGMKS 1415
VD + RR+ L +K+
Sbjct: 510 NVDSKTRRLGLSIKA 524
Score = 150 (57.9 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 32/89 (35%), Positives = 54/89 (60%)
Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
+SR ++E+ + NL G V G +K + YG F+ + + GL HV++++ V++
Sbjct: 180 ESRAEQRAEV--IGNLTEGQTVDGVVKNITEYGAFVDLGGVD--GLLHVTDMAWRRVNHP 235
Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
I GE VKV+++K++K+ RISLGMK
Sbjct: 236 NEILNIGETVKVQVIKINKDTHRISLGMK 264
Score = 106 (42.4 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 42/176 (23%), Positives = 75/176 (42%)
Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
IL+ S E ++ G V G V + +GA V GGV L + M+ + P
Sbjct: 177 ILEESRAEQRAEVIGNLTEGQTVDGVVKNITEYGAFVDL-GGVDGLLHVTDMAWRRVNHP 235
Query: 415 GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
+ +G + +V+ + + RI++ K+ L + ++ A+ + G +T I
Sbjct: 236 NEILNIGETVKVQVIKINKDTHRISLGMKQ-LQEDPWDLVG--AKYPLESVHTGRVTNIT 292
Query: 473 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
+G FV GV+G SE+ P + Q V+ ++ A RR++L
Sbjct: 293 DYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDGAKRRVSL 348
Score = 104 (41.7 bits), Expect = 3.2e-16, Sum P(4) = 3.2e-16
Identities = 30/108 (27%), Positives = 54/108 (50%)
Query: 601 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
Q+L +D N+++S + L S A+Q ++ V G V NI E G FV LG
Sbjct: 159 QILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLTEGQTVDGVVKNITEYGAFVD-LGG 217
Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
+ G + + ++ +G++V+ ++ +N +T RI+L +KQ
Sbjct: 218 VDGLLHVTDMAWRRVNHPNEILNIGETVKVQVIKINKDTHRISLGMKQ 265
Score = 72 (30.4 bits), Expect = 9.5e-06, Sum P(4) = 9.5e-06
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 750 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA----GATV----ESGSVIQAAILD 801
G+V+EG+V +FG+ + D+ G + L+ G G +++A + +
Sbjct: 368 GTVVEGEVKNITEFGLFIGLP--GDIDGMVHLSDLSWDERGEDAIQNYRKGDMVKAVVSE 425
Query: 802 VAKAERLVDLSLKTVFIDRFREA 824
V + + LS+K+V D+F EA
Sbjct: 426 VDIDKERISLSIKSVGGDKFAEA 448
Score = 67 (28.6 bits), Expect = 3.2e-16, Sum P(4) = 3.2e-16
Identities = 42/176 (23%), Positives = 78/176 (44%)
Query: 361 FEGLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK- 416
FE L+ F + G VVKGKVIA+++ AI+ G K + + EF PG+
Sbjct: 9 FEALLNESFEMDTPEEGSVVKGKVIAIEAGQAIIDV--GYKMEGRV-ELKEF--ANPGEA 63
Query: 417 -KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA---ILSSYAEATDRLITHGWITKIE 472
+ +G E+ + ++ R + + + + A + +YA+ D+ + +++
Sbjct: 64 PEISIGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYAD--DQRVEGAIFGRVK 121
Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ---VVKC-RIMSSIPASRR 524
G F G F P S++ + P + + + Q ++K R +I SRR
Sbjct: 122 --GGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRR 175
Score = 63 (27.2 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 37/172 (21%), Positives = 74/172 (43%)
Query: 939 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
G++V+ E+ I L + G +H+++++ D+ E+ N++ G V A +
Sbjct: 368 GTVVEGEVKNITEFGLFIGLPGDIDGMVHLSDLSWDERG--EDAIQNYRKGDMVKAVV-- 423
Query: 999 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1058
++ D+ K + LSIK +V G K V G +T V ++ + +
Sbjct: 424 --SEVDIDKERI-SLSIK----SVG--GDKFAEAVGGVKRGSIITVNVTAIE-DGGIEVE 473
Query: 1059 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1110
+K+ FI S + RF +G V V +++ + + L L ++
Sbjct: 474 YEGMKS--FIRRSDLSRDRADQRPERFSVGDKVDVRVTNVDSKTRRLGLSIK 523
Score = 62 (26.9 bits), Expect = 9.2e-11, Sum P(3) = 9.2e-11
Identities = 30/131 (22%), Positives = 57/131 (43%)
Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
GQ V G V + A + + + L + D A+ + +IG+ V V+ I
Sbjct: 196 GQTVDGVVKNITEYGAFVDLGG-VDGLLHVTDMAWR--RVNHPNEILNIGETVKVQVIKI 252
Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
NK+ + L ++ Q+ D + +++ +H G R++ I G V++ P
Sbjct: 253 NKDTHRISLGMKQLQEDPWDLVG--AKYPLES-VHTG-----RVTNITDY--GAFVELEP 302
Query: 1159 HLYGRVHFTEL 1169
+ G VH +E+
Sbjct: 303 GVEGLVHVSEM 313
Score = 62 (26.9 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 31/133 (23%), Positives = 57/133 (42%)
Query: 1076 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI--H 1133
SE+ ++ H GK ++S ++E +++ L + + +S + + F H
Sbjct: 311 SEMSWTKKNVHPGK-----IVSTSQEVEVMVLEIDGAKRRVSLGLKQTMRNPWEVFAETH 365
Query: 1134 -EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
EG +V G + I GL + + + G VH ++L +DE D + Y
Sbjct: 366 PEGTVVEGEVKNITEF--GLFIGLPGDIDGMVHLSDLS----------WDERGEDAIQNY 413
Query: 1193 DEGQFVKCKVLEI 1205
+G VK V E+
Sbjct: 414 RKGDMVKAVVSEV 426
Score = 55 (24.4 bits), Expect = 3.2e-16, Sum P(4) = 3.2e-16
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 751 SVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAK 804
SV G+V D+G V E H + + G V + ++ +L++
Sbjct: 282 SVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDG 341
Query: 805 AERLVDLSLK 814
A+R V L LK
Sbjct: 342 AKRRVSLGLK 351
Score = 55 (24.4 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
EG +V G++ I +G ++ +G + GRV E N + +S DE
Sbjct: 24 EGSVVKGKVIAIEAGQA--IIDVGYKMEGRVELKEFANPGEAPEISIGDE 71
Score = 47 (21.6 bits), Expect = 2.0e-15, Sum P(4) = 2.0e-15
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 936 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV 978
Y + S+ +T I ++ G G +H++E++ K NV
Sbjct: 278 YPLESVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNV 320
Score = 46 (21.3 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 788 TVESGSVIQAAILDVAKAERLVDLSLK 814
T E GSV++ ++ + + ++D+ K
Sbjct: 21 TPEEGSVVKGKVIAIEAGQAIIDVGYK 47
Score = 40 (19.1 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 1032 EECDVSIGQRVTGYVYKVDNEWALLTISRHL 1062
E ++SIG V Y+ +N ISR +
Sbjct: 62 EAPEISIGDEVEVYLRAAENARGEAVISREM 92
Score = 39 (18.8 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 939 GSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
GS+V+ ++ I+ + + G GR+ + E
Sbjct: 25 GSVVKGKVIAIEAGQAIIDVGYKMEGRVELKE 56
Score = 39 (18.8 bits), Expect = 9.5e-06, Sum P(4) = 9.5e-06
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 1116 ISDKTVDISNDNMQTFIHEGDI 1137
I D +++ + M++FI D+
Sbjct: 465 IEDGGIEVEYEGMKSFIRRSDL 486
Score = 39 (18.8 bits), Expect = 0.00040, Sum P(4) = 0.00040
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGG 1151
D ++ + E DI RIS + VGG
Sbjct: 417 DMVKAVVSEVDIDKERISLSIKSVGG 442
>UNIPROTKB|Q9KQT3 [details] [associations]
symbol:VC_1915 "30S ribosomal protein S1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
PIR:B82141 RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 171 (65.3 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 51/171 (29%), Positives = 87/171 (50%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
+ G V N+T GCF+ + ++ V +S + P K +G V VL ++
Sbjct: 280 LSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEER 339
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
+R+ + LK + QS + GD V G+IK + +G+FI +E + GL H+S
Sbjct: 340 RRISLGLKQCKANPW-QSFAEAQAK---GDKVTGKIKSITDFGIFIGLEG-GIDGLVHLS 394
Query: 1376 ELSEDHVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1424
++S + V E + ++ G+++ +L VD E+ RISLG+K +ND N
Sbjct: 395 DISWN-VPGEEAVREFKKGDEISAVVLAVDAERERISLGIKQ--MENDPFN 442
Score = 170 (64.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 50/171 (29%), Positives = 87/171 (50%)
Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
E +E L V+G VKN+T G F+ L +D + +++++ V+ P + +G +
Sbjct: 184 ELLETLQEGTEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
+VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 243 VKVLKFDRDRTRVSLGLK----QLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEE 298
Query: 1366 TNLVGLCHVSELSEDHVDNIET--IYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ GL HVSE+ + NI + G++V+V +L +D+E+RRISLG+K
Sbjct: 299 -GVEGLVHVSEMDWTN-KNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLK 347
Score = 164 (62.8 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 48/172 (27%), Positives = 90/172 (52%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1315
V G +K++T G FI L +D V LS++S E +EF G ++ VL+V+
Sbjct: 367 VTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAER 426
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
+R+ + +K ++ + +N G +V G + V++ G I +E+ + G S
Sbjct: 427 ERISLGIKQMENDPFNAYVSDNKK----GALVNGTVTAVDAKGATIELED-GVEGYIRAS 481
Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
E+S D +++ I G+KV+ K VD++ R I+L +K+ K++A+ ++
Sbjct: 482 EVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKA---KDEAEEQEV 530
Score = 162 (62.1 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 82/342 (23%), Positives = 133/342 (38%)
Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
++ G VKG V + +GA V GGV L + M+ + P + VG E++ +VL
Sbjct: 189 LQEGTEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLK 247
Query: 431 VKSKRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
R V+ K L + +AI Y E +L G +T + +GCFV GV+G
Sbjct: 248 FDRDRTRVSLGLKQLGEDPWVAIAKRYPEG-HKL--SGRVTNLTDYGCFVEIEEGVEGLV 304
Query: 489 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXX 547
SE+ + PS + +VG V+ ++ RRI+L +K + +
Sbjct: 305 HVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLG--LKQCKANP-WQSFAEAQ 361
Query: 548 XXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL-LV 604
I G G HL+D + ++V K G E + L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLA 421
Query: 605 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 664
+D E + L K + SD ++V+G V + G + + G+
Sbjct: 422 VDAERERISLGIKQMENDPFNAYVSDNKK---GALVNGTVTAVDAKGATIELEDGVEGYI 478
Query: 665 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
S+ + D S VG V + V+ + I LS+K
Sbjct: 479 RASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIK 520
Score = 140 (54.3 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 56/206 (27%), Positives = 96/206 (46%)
Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI--VQGYVKN---VTSKGC 1269
V+++L + DG T S LEK + + +I + G VK V G
Sbjct: 68 VDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGI 127
Query: 1270 FIMLSRKL-DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
L L D + + ++E+ E EF + KL R V +S+R + ++S R
Sbjct: 128 RAFLPGSLVDVRPIRDT---AHLENKELEFKVIKLDQKRNNVV--VSRRAVIESESSVER 182
Query: 1329 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
E+ L L G V G +K + YG F+ + + GL H+++++ V + I
Sbjct: 183 ----DEL--LETLQEGTEVKGIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEI 234
Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMK 1414
G+++ VK+LK D+++ R+SLG+K
Sbjct: 235 VNVGDEILVKVLKFDRDRTRVSLGLK 260
Score = 135 (52.6 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 49/204 (24%), Positives = 91/204 (44%)
Query: 335 GSCVRVRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 393
G V V +L ++ G+ + A F + K G V GK+ ++ FG +
Sbjct: 325 GDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAK-GDKVTGKIKSITDFGIFIGL 383
Query: 394 PGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL 449
GG+ L H+S+ PG ++FK G E+ VL V ++R ++ + + +
Sbjct: 384 EGGIDGLV---HLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERERIS--LGIKQMEN 438
Query: 450 AILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 508
++Y + + +G +T ++ G + +GV+G+ SE+ D + S + +VG
Sbjct: 439 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 498
Query: 509 QVVKCRIMSSIPASRRINLSFMMK 532
V+ + +R INLS K
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAK 522
Score = 112 (44.5 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 78/374 (20%), Positives = 154/374 (41%)
Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
A FE + + + G +VKG V+A+++ +V G+K+ +P +F+ +
Sbjct: 6 AQLFEEFL-NETQFQQGTIVKGTVVAIENGYVLVD--AGLKSESAIP-AEQFKNAAGELE 61
Query: 418 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILS-SYAEATDRL-ITHGWITKIEK 473
+VG+++ + V+ ++ +K +L +Y EA + I +G K++
Sbjct: 62 VQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIING---KVK- 117
Query: 474 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSF 529
G F NG++ F P S + + P + + + + +V+K + +++ SRR +
Sbjct: 118 -GGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRR---AV 173
Query: 530 MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATV 588
+ + V D + G G + +A ++H +
Sbjct: 174 IESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPS- 232
Query: 589 MKSVIKPGYEF-DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 647
++ G E ++L D + + + L K + A + G V N+
Sbjct: 233 --EIVNVGDEILVKVLKFDRDRTRVSLGLKQL---GEDPWVAIAKRYPEGHKLSGRVTNL 287
Query: 648 IETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSL 705
+ GCFV + G S+ +D ++ SK VG V +LD++ E RI+L L
Sbjct: 288 TDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGL 346
Query: 706 KQSCCSSTDASFMQ 719
KQ C ++ SF +
Sbjct: 347 KQ-CKANPWQSFAE 359
Score = 67 (28.6 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 19/88 (21%), Positives = 38/88 (43%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+ D +V G V V +KG I L ++ + S +S +E +G V +
Sbjct: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEI 1335
V+ ++ + +++K D A + E+
Sbjct: 505 FTGVDRKNRVINLSIKAKDE--AEEQEV 530
Score = 58 (25.5 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 17/71 (23%), Positives = 28/71 (39%)
Query: 750 GSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVA 803
G + G+V D+G V EE H + + V G ++ +LD+
Sbjct: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDID 336
Query: 804 KAERLVDLSLK 814
+ R + L LK
Sbjct: 337 EERRRISLGLK 347
Score = 56 (24.8 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 750 GSVIEGKVHESNDFGVVVSFEE------H-SDVYGFITHHQLAGATVESGSVIQAAILDV 802
G + GK+ DFG+ + E H SD+ + + A + G I A +L V
Sbjct: 364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEE-AVREFKKGDEISAVVLAV 422
Query: 803 -AKAERLVDLSLKTVFIDRF 821
A+ ER + L +K + D F
Sbjct: 423 DAERER-ISLGIKQMENDPF 441
Score = 38 (18.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 790 ESGSVIQAAILDVAKAERLVDLSLKT 815
+ G++++ ++ + LVD LK+
Sbjct: 19 QQGTIVKGTVVAIENGYVLVDAGLKS 44
>TIGR_CMR|VC_1915 [details] [associations]
symbol:VC_1915 "ribosomal protein S1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945 OMA:QLGQDPW
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 PIR:B82141
RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 171 (65.3 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 51/171 (29%), Positives = 87/171 (50%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
+ G V N+T GCF+ + ++ V +S + P K +G V VL ++
Sbjct: 280 LSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEER 339
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
+R+ + LK + QS + GD V G+IK + +G+FI +E + GL H+S
Sbjct: 340 RRISLGLKQCKANPW-QSFAEAQAK---GDKVTGKIKSITDFGIFIGLEG-GIDGLVHLS 394
Query: 1376 ELSEDHVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1424
++S + V E + ++ G+++ +L VD E+ RISLG+K +ND N
Sbjct: 395 DISWN-VPGEEAVREFKKGDEISAVVLAVDAERERISLGIKQ--MENDPFN 442
Score = 170 (64.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 50/171 (29%), Positives = 87/171 (50%)
Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
E +E L V+G VKN+T G F+ L +D + +++++ V+ P + +G +
Sbjct: 184 ELLETLQEGTEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
+VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 243 VKVLKFDRDRTRVSLGLK----QLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEE 298
Query: 1366 TNLVGLCHVSELSEDHVDNIET--IYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ GL HVSE+ + NI + G++V+V +L +D+E+RRISLG+K
Sbjct: 299 -GVEGLVHVSEMDWTN-KNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLK 347
Score = 164 (62.8 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 48/172 (27%), Positives = 90/172 (52%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1315
V G +K++T G FI L +D V LS++S E +EF G ++ VL+V+
Sbjct: 367 VTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAER 426
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
+R+ + +K ++ + +N G +V G + V++ G I +E+ + G S
Sbjct: 427 ERISLGIKQMENDPFNAYVSDNKK----GALVNGTVTAVDAKGATIELED-GVEGYIRAS 481
Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
E+S D +++ I G+KV+ K VD++ R I+L +K+ K++A+ ++
Sbjct: 482 EVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKA---KDEAEEQEV 530
Score = 162 (62.1 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 82/342 (23%), Positives = 133/342 (38%)
Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
++ G VKG V + +GA V GGV L + M+ + P + VG E++ +VL
Sbjct: 189 LQEGTEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLK 247
Query: 431 VKSKRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
R V+ K L + +AI Y E +L G +T + +GCFV GV+G
Sbjct: 248 FDRDRTRVSLGLKQLGEDPWVAIAKRYPEG-HKL--SGRVTNLTDYGCFVEIEEGVEGLV 304
Query: 489 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXX 547
SE+ + PS + +VG V+ ++ RRI+L +K + +
Sbjct: 305 HVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLG--LKQCKANP-WQSFAEAQ 361
Query: 548 XXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQL-LV 604
I G G HL+D + ++V K G E + L
Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLA 421
Query: 605 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 664
+D E + L K + SD ++V+G V + G + + G+
Sbjct: 422 VDAERERISLGIKQMENDPFNAYVSDNKK---GALVNGTVTAVDAKGATIELEDGVEGYI 478
Query: 665 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
S+ + D S VG V + V+ + I LS+K
Sbjct: 479 RASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIK 520
Score = 140 (54.3 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 56/206 (27%), Positives = 96/206 (46%)
Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI--VQGYVKN---VTSKGC 1269
V+++L + DG T S LEK + + +I + G VK V G
Sbjct: 68 VDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGI 127
Query: 1270 FIMLSRKL-DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
L L D + + ++E+ E EF + KL R V +S+R + ++S R
Sbjct: 128 RAFLPGSLVDVRPIRDT---AHLENKELEFKVIKLDQKRNNVV--VSRRAVIESESSVER 182
Query: 1329 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
E+ L L G V G +K + YG F+ + + GL H+++++ V + I
Sbjct: 183 ----DEL--LETLQEGTEVKGIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEI 234
Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMK 1414
G+++ VK+LK D+++ R+SLG+K
Sbjct: 235 VNVGDEILVKVLKFDRDRTRVSLGLK 260
Score = 135 (52.6 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 49/204 (24%), Positives = 91/204 (44%)
Query: 335 GSCVRVRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 393
G V V +L ++ G+ + A F + K G V GK+ ++ FG +
Sbjct: 325 GDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAK-GDKVTGKIKSITDFGIFIGL 383
Query: 394 PGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL 449
GG+ L H+S+ PG ++FK G E+ VL V ++R ++ + + +
Sbjct: 384 EGGIDGLV---HLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERERIS--LGIKQMEN 438
Query: 450 AILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 508
++Y + + +G +T ++ G + +GV+G+ SE+ D + S + +VG
Sbjct: 439 DPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVG 498
Query: 509 QVVKCRIMSSIPASRRINLSFMMK 532
V+ + +R INLS K
Sbjct: 499 DKVEAKFTGVDRKNRVINLSIKAK 522
Score = 112 (44.5 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 78/374 (20%), Positives = 154/374 (41%)
Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
A FE + + + G +VKG V+A+++ +V G+K+ +P +F+ +
Sbjct: 6 AQLFEEFL-NETQFQQGTIVKGTVVAIENGYVLVD--AGLKSESAIP-AEQFKNAAGELE 61
Query: 418 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILS-SYAEATDRL-ITHGWITKIEK 473
+VG+++ + V+ ++ +K +L +Y EA + I +G K++
Sbjct: 62 VQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIING---KVK- 117
Query: 474 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSF 529
G F NG++ F P S + + P + + + + +V+K + +++ SRR +
Sbjct: 118 -GGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRR---AV 173
Query: 530 MMKPTRVSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATV 588
+ + V D + G G + +A ++H +
Sbjct: 174 IESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPS- 232
Query: 589 MKSVIKPGYEF-DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 647
++ G E ++L D + + + L K + A + G V N+
Sbjct: 233 --EIVNVGDEILVKVLKFDRDRTRVSLGLKQL---GEDPWVAIAKRYPEGHKLSGRVTNL 287
Query: 648 IETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSL 705
+ GCFV + G S+ +D ++ SK VG V +LD++ E RI+L L
Sbjct: 288 TDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGL 346
Query: 706 KQSCCSSTDASFMQ 719
KQ C ++ SF +
Sbjct: 347 KQ-CKANPWQSFAE 359
Score = 67 (28.6 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 19/88 (21%), Positives = 38/88 (43%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+ D +V G V V +KG I L ++ + S +S +E +G V +
Sbjct: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEI 1335
V+ ++ + +++K D A + E+
Sbjct: 505 FTGVDRKNRVINLSIKAKDE--AEEQEV 530
Score = 58 (25.5 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 17/71 (23%), Positives = 28/71 (39%)
Query: 750 GSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVA 803
G + G+V D+G V EE H + + V G ++ +LD+
Sbjct: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDID 336
Query: 804 KAERLVDLSLK 814
+ R + L LK
Sbjct: 337 EERRRISLGLK 347
Score = 56 (24.8 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 750 GSVIEGKVHESNDFGVVVSFEE------H-SDVYGFITHHQLAGATVESGSVIQAAILDV 802
G + GK+ DFG+ + E H SD+ + + A + G I A +L V
Sbjct: 364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEE-AVREFKKGDEISAVVLAV 422
Query: 803 -AKAERLVDLSLKTVFIDRF 821
A+ ER + L +K + D F
Sbjct: 423 DAERER-ISLGIKQMENDPF 441
Score = 38 (18.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 790 ESGSVIQAAILDVAKAERLVDLSLKT 815
+ G++++ ++ + LVD LK+
Sbjct: 19 QQGTIVKGTVVAIENGYVLVDAGLKS 44
>TIGR_CMR|CBU_0528 [details] [associations]
symbol:CBU_0528 "ribosomal protein S1" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 eggNOG:COG0539 RefSeq:NP_819560.2
ProteinModelPortal:Q83E09 SMR:Q83E09 PRIDE:Q83E09 GeneID:1208413
KEGG:cbu:CBU_0528 PATRIC:17929757 HOGENOM:HOG000044052 KO:K02945
OMA:QLGQDPW ProtClustDB:PRK06299 BioCyc:CBUR227377:GJ7S-531-MONOMER
TIGRFAMs:TIGR00717 Uniprot:Q83E09
Length = 551
Score = 201 (75.8 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 52/180 (28%), Positives = 96/180 (53%)
Query: 1237 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1296
+ +T + ++E+L ++G +KN+T G F+ L +D + +++++ G V+ P
Sbjct: 171 EAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGG-VDGLLHITDMAWGRVKHPSD 229
Query: 1297 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1356
+G V +VL + KRV + +K ++ E V V G++ +
Sbjct: 230 LLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIE----RRYPVNSRVFGKVTNITD 285
Query: 1357 YGLFITIENTNLVGLCHVSELSEDHVDNIET--IYRAGEKVKVKILKVDKEKRRISLGMK 1414
YG F+ +E + GL H SEL + NI + ++GE+V+V +L++D+E+RRISLG+K
Sbjct: 286 YGCFVKLEE-GVEGLVHTSELDWTN-KNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIK 343
Score = 170 (64.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 55/173 (31%), Positives = 87/173 (50%)
Query: 1247 KIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLV 1304
KIE P N V G V N+T GCF+ L ++ V S L P K G+ V
Sbjct: 265 KIERRYPVNSRVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEV 324
Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI-GQIKRVESYGLFITI 1363
VL ++ +R+ + +K R Q + H D I G+++ + +G+FI +
Sbjct: 325 EVMVLEIDEERRRISLGIKQC-KRNPWQE----FAEKHEKDEKITGKVRSITDFGMFIGL 379
Query: 1364 ENTNLVGLCHVSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
E ++ GL H+S++S E + I Y+ G++V+ IL +D E+ RISLG+K
Sbjct: 380 EG-DIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERERISLGIK 430
Score = 162 (62.1 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 42/126 (33%), Positives = 68/126 (53%)
Query: 1289 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1348
GY+E E +F I K+ R V +S+R + +TS R A L L G +
Sbjct: 141 GYLEDKEIDFKIIKMDQRRNNVV--VSRRAVMEAETSAERQA------RLEELQEGQEIK 192
Query: 1349 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1408
G IK + YG F+ + + GL H+++++ V + + G++V VK+LK D++K+R
Sbjct: 193 GVIKNITDYGAFVDLGGVD--GLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKR 250
Query: 1409 ISLGMK 1414
+SLGMK
Sbjct: 251 VSLGMK 256
Score = 142 (55.0 bits), Expect = 4.0e-13, Sum P(3) = 4.0e-13
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
+++ G +KG + + +GA V GGV L + M+ + P VG E+ +VL
Sbjct: 184 ELQEGQEIKGVIKNITDYGAFVDL-GGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVL 242
Query: 430 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
KR+++ K+ L A + R+ G +T I +GCFV+ GV+G
Sbjct: 243 KFDRDKKRVSLGMKQ-LADDPWAKIERRYPVNSRVF--GKVTNITDYGCFVKLEEGVEGL 299
Query: 488 APRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
SEL + PS + G+ V+ ++ RRI+L
Sbjct: 300 VHTSELDWTNKNIHPSKVVQSGEEVEVMVLEIDEERRRISL 340
Score = 127 (49.8 bits), Expect = 4.0e-13, Sum P(3) = 4.0e-13
Identities = 38/162 (23%), Positives = 82/162 (50%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEP 1313
+ G V+++T G FI L +D V LS++S + ES E + + G V +L ++P
Sbjct: 363 ITGKVRSITDFGMFIGLEGDIDGLVHLSDIS--WTESGEEAIRNYKKGDEVQAVILGIDP 420
Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
+R+ + +K + + + + ++ ++K VES + + + ++G
Sbjct: 421 ERERISLGIKQLEGDPFMEF----VESYDKDAVIQAKVKEVESKQAVLELAD-QVLGQMR 475
Query: 1374 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
+++ + D V ++ G++V VKI+ VD++ R I++ K+
Sbjct: 476 LADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKA 517
Score = 116 (45.9 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 71/344 (20%), Positives = 133/344 (38%)
Query: 372 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
K G +VKG +I G V V+A P + + PG + E+ F+++ +
Sbjct: 99 KAGEMVKGVIIERVKGGFTVDL-NSVRAFLPGSLVDVKPVRDPG--YLEDKEIDFKIIKM 155
Query: 432 KSKRITVT-HKKTLVKSKLAI--LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
+R V ++ +++++ + + E + G I I +G FV GV G
Sbjct: 156 DQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDL-GGVDGLL 214
Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDXXXXXXXX 547
+++ PS + +VG V +++ +R++L + ++
Sbjct: 215 HITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNS 274
Query: 548 XXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 606
+ +G +G + T L D V++ G E + +L +D
Sbjct: 275 RVFGKVTNITDYGCFVKLEEGV-EGLVHTSEL-DWTNKNIHPSKVVQSGEEVEVMVLEID 332
Query: 607 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
E + L K N Q+ H + + G V +I + G F+ G + G
Sbjct: 333 EERRRISLGIKQCKRNPWQEFAE--KH-EKDEKITGKVRSITDFGMFIGLEGDIDGLVHL 389
Query: 667 SK---AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
S G+ A + Y G V++ IL ++ E RI+L +KQ
Sbjct: 390 SDISWTESGEEA--IRNYKKGDEVQAVILGIDPERERISLGIKQ 431
Score = 103 (41.3 bits), Expect = 4.7e-06, Sum P(4) = 4.7e-06
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDV 694
NS V G V NI + GCFV+ + G S+ +D ++ SK G+ V +L++
Sbjct: 273 NSRVFGKVTNITDYGCFVKLEEGVEGLVHTSE-LDWTNKNIHPSKVVQSGEEVEVMVLEI 331
Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 728
+ E RI+L +KQ C + F ++H +EKI
Sbjct: 332 DEERRRISLGIKQ-CKRNPWQEFAEKHEK-DEKI 363
Score = 81 (33.6 bits), Expect = 3.8e-10, Sum P(4) = 3.8e-10
Identities = 25/112 (22%), Positives = 60/112 (53%)
Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
+E +E + ++Q VK V SK + L+ ++ ++ L++ + V+ +E +G V
Sbjct: 438 MEFVESYDKDAVIQAKVKEVESKQAVLELADQVLGQMRLADYTYDRVKDLTQELNVGDEV 497
Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSR----TASQSEINNLSNLHVGDIVIGQIK 1352
A ++++V+ ++ + V+ K + R T + S++ + L GD++ +I+
Sbjct: 498 AVKIVNVDRKNRLINVSHKAVEGRSEKGTRTVSDVPTKTTL--GDLLKEKIQ 547
Score = 65 (27.9 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 749 IGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDV 802
+ S + GKV D+G V EE H+ + + V+SG ++ +L++
Sbjct: 272 VNSRVFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEI 331
Query: 803 AKAERLVDLSLK 814
+ R + L +K
Sbjct: 332 DEERRRISLGIK 343
Score = 60 (26.2 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 19/78 (24%), Positives = 42/78 (53%)
Query: 939 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF-----SNFKIGQTVT 993
G+LV+A + E++P + + G+ G I +E +++ +V + F S+ G+T
Sbjct: 21 GALVKATVVEVRPDRVIVNAGLKSEGIIPASEFRNEEPHVGDEFFVVIEASDNGFGETRL 80
Query: 994 ARIIAKSNKP--DMKKSF 1009
+R A+ K +++K++
Sbjct: 81 SREKARRAKAWSELEKAY 98
Score = 60 (26.2 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 14/67 (20%), Positives = 33/67 (49%)
Query: 936 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 995
YD +++QA++ E++ + L+ G++ + + D+ V++L +G V +
Sbjct: 444 YDKDAVIQAKVKEVESKQAVLELADQVLGQMRLADYTYDR---VKDLTQELNVGDEVAVK 500
Query: 996 IIAKSNK 1002
I+ K
Sbjct: 501 IVNVDRK 507
Score = 59 (25.8 bits), Expect = 3.8e-10, Sum P(4) = 3.8e-10
Identities = 22/78 (28%), Positives = 33/78 (42%)
Query: 753 IEGKVHESNDFGVVVSFEE------H-SDVYGFITHHQLAGATVESGSVIQAAILDVAKA 805
I GKV DFG+ + E H SD+ + + A + G +QA IL +
Sbjct: 363 ITGKVRSITDFGMFIGLEGDIDGLVHLSDI-SWTESGEEAIRNYKKGDEVQAVILGIDPE 421
Query: 806 ERLVDLSLKTVFIDRFRE 823
+ L +K + D F E
Sbjct: 422 RERISLGIKQLEGDPFME 439
Score = 49 (22.3 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 741 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-----THHQLAGATVES--GS 793
+++VE + +VI+ KV E V+ + V G + T+ ++ T E G
Sbjct: 438 MEFVESYDKDAVIQAKVKEVESKQAVLELADQ--VLGQMRLADYTYDRVKDLTQELNVGD 495
Query: 794 VIQAAILDVAKAERLVDLSLKTV 816
+ I++V + RL+++S K V
Sbjct: 496 EVAVKIVNVDRKNRLINVSHKAV 518
Score = 42 (19.8 bits), Expect = 4.0e-13, Sum P(3) = 4.0e-13
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 327 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 373
+LEK YK G V+ I+ R G + AF L + DVKP
Sbjct: 93 ELEKAYKAGEMVKGVIIE-RVKGGFTVDLNSVRAF--LPGSLVDVKP 136
Score = 40 (19.1 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 936 YDVGSLVQAEITEIKPLELRLKFGI 960
Y G VQA I I P R+ GI
Sbjct: 405 YKKGDEVQAVILGIDPERERISLGI 429
Score = 37 (18.1 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 676 DLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
DL++ VG V I++V+ + I +S K
Sbjct: 486 DLTQELNVGDEVAVKIVNVDRKNRLINVSHK 516
>UNIPROTKB|O06147 [details] [associations]
symbol:rpsA "30S ribosomal protein S1" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 EMBL:BX842577 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
KO:K02945 PIR:D70559 RefSeq:NP_216146.1 RefSeq:NP_336122.1
RefSeq:YP_006515019.1 ProteinModelPortal:O06147 SMR:O06147
PhosSite:P12061590 PRIDE:O06147 EnsemblBacteria:EBMYCT00000003837
EnsemblBacteria:EBMYCT00000072148 GeneID:13316409 GeneID:885188
GeneID:924199 KEGG:mtc:MT1666 KEGG:mtu:Rv1630 KEGG:mtv:RVBD_1630
PATRIC:18125426 TubercuList:Rv1630 HOGENOM:HOG000044053 OMA:WQQFART
ProtClustDB:PRK07899 Uniprot:O06147
Length = 481
Score = 212 (79.7 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 51/172 (29%), Positives = 94/172 (54%)
Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
E + +L I +G V ++ + G F+ L +D V +S LS +++ P + +G V
Sbjct: 201 EFLNNLQKGTIRKGVVSSIVNFGAFVDLGG-VDGLVHVSELSWKHIDHPSEVVQVGDEVT 259
Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1364
VL V+ +RV ++LK + + + + H +G IV G++ ++ +G F+ +E
Sbjct: 260 VEVLDVDMDRERVSLSLKATQ-----EDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVE 314
Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ GL H+SEL+E HV+ + + G+ VK++ +D E+RRISL +K +
Sbjct: 315 E-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365
Score = 162 (62.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 34/117 (29%), Positives = 67/117 (57%)
Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
IGK + +++ ++ V ++ + +T S+ L+NL G I G + + ++G
Sbjct: 165 IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGA 224
Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
F+ + + GL HVSELS H+D+ + + G++V V++L VD ++ R+SL +K++
Sbjct: 225 FVDLGGVD--GLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKAT 279
Score = 130 (50.8 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 46/162 (28%), Positives = 75/162 (46%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
++++ G + KG V ++ +FGA V GGV L + +S I P + +VG E+ V
Sbjct: 204 NNLQKGTIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEV 262
Query: 429 LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
L V +R++++ K T ++A I G +TK+ G FVR G++G
Sbjct: 263 LDVDMDRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEG 319
Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
SEL P + VG +++ RRI+LS
Sbjct: 320 LVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLS 361
Score = 124 (48.7 bits), Expect = 0.00073, P = 0.00073
Identities = 81/393 (20%), Positives = 159/393 (40%)
Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
G +V+G ++ VD ++ + + P +S V P + VG E+ VL +
Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95
Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
K R+ ++ K+ + + + E + + G + ++ K G + G++GF P S
Sbjct: 96 KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151
Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDXXXX 543
E+ +P ++G+ ++ +I+ +++ SRR L R SE
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVR-SE--FLN 204
Query: 544 XXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
+ G G + L+ H++H + V++ G E +
Sbjct: 205 NLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261
Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
+L +D + + LS K + Q+ P + H +V G V ++ G FVR
Sbjct: 262 VLDVDMDRERVSLSLK-----ATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 316
Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD----A 715
+ G S+ + + VG ++D++ E RI+LSLKQ+ T+ A
Sbjct: 317 IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEFDPA 376
Query: 716 SF-MQEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
+ M + + +E+ + + +W+EGF
Sbjct: 377 KYGMADSY--DEQGNYIFPEGFDAETNEWLEGF 407
Score = 46 (21.3 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 14/76 (18%), Positives = 30/76 (39%)
Query: 633 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
+ + +V G + + + + G P + D ++ VG V + +L
Sbjct: 32 YFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVL 91
Query: 693 DVNSETGRITLSLKQS 708
+ GR+ LS K++
Sbjct: 92 TKEDKEGRLILSKKRA 107
Score = 45 (20.9 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 792 GSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
G +++ I+ V + E L+D+ KT + RE
Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARE 67
Score = 45 (20.9 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 316 TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGM 375
TI V +EV L+ YK + R L +H + E LV T D K G
Sbjct: 42 TIVKVDRDEVL-LDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED-KEGR 99
Query: 376 VVKGK 380
++ K
Sbjct: 100 LILSK 104
>UNIPROTKB|Q71X59 [details] [associations]
symbol:LMOf2365_2340 "S1 RNA binding domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AE017262 GenomeReviews:AE017262_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
RefSeq:YP_014929.1 ProteinModelPortal:Q71X59 STRING:Q71X59
GeneID:2799400 KEGG:lmf:LMOf2365_2340 PATRIC:20326043
eggNOG:COG1098 HOGENOM:HOG000217052 KO:K07570 OMA:KSIHDIA
ProtClustDB:PRK08059 Uniprot:Q71X59
Length = 117
Score = 173 (66.0 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 32/79 (40%), Positives = 54/79 (68%)
Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
+S VGD+V G+I ++SYG F+ ++N+ GL H+SE++ V +I G++VKV
Sbjct: 1 MSTFKVGDVVSGKIAGIQSYGAFVALDNSTQ-GLVHISEITHGFVKDIHDFLEVGQEVKV 59
Query: 1398 KILKVDKEKRRISLGMKSS 1416
KIL +D+EK +ISL ++++
Sbjct: 60 KILDIDEEKNKISLSIRAT 78
>TIGR_CMR|GSU_2603 [details] [associations]
symbol:GSU_2603 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 RefSeq:NP_953648.2
GeneID:2686316 KEGG:gsu:GSU2603 PATRIC:22028059
BioCyc:GSUL243231:GH27-2582-MONOMER Uniprot:Q749Y9
Length = 586
Score = 173 (66.0 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
Identities = 47/160 (29%), Positives = 82/160 (51%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
V G V ++T G F+ L ++ V +S +S + P +G V VL ++ +
Sbjct: 305 VSGRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGN 364
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
+R+ + LK + + +Q E VG + GQIK + +G+FI ++ + GL HVS
Sbjct: 365 RRISLGLKQAQANPWTQLE----EKYPVGTKLEGQIKSITDFGVFIGVDE-GIDGLVHVS 419
Query: 1376 ELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
++S + + +Y G+ V+ +L VD E R+SLG+K
Sbjct: 420 DISWTKRIKHPGEVYAKGQTVQAVVLNVDAENERLSLGIK 459
Score = 168 (64.2 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 47/178 (26%), Positives = 90/178 (50%)
Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
G E + +L+ +G VKN+T G F+ + +D + ++++S G + P + G
Sbjct: 205 GVRTETLANLAEGQTREGVVKNITDYGAFVDIGG-VDGLLHVTDMSWGRLGHPSEMLKPG 263
Query: 1302 KLVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
++ ++L + ++ + LK T D A + + VGD V G++ + YG
Sbjct: 264 DKLSVKILKYDQEKGKISLGLKQITPDPWLAVEQKFQ------VGDRVSGRVVSMTDYGA 317
Query: 1360 FITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
F+ ++ + GL HVSE+S + + + G++V+ +L +D RRISLG+K +
Sbjct: 318 FVALDE-GVEGLVHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRRISLGLKQA 374
Score = 156 (60.0 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 43/160 (26%), Positives = 86/160 (53%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
++G +K++T G FI + +D V +S++S ++ P + + G+ V VL+V+ +
Sbjct: 392 LEGQIKSITDFGVFIGVDEGIDGLVHVSDISWTKRIKHPGEVYAKGQTVQAVVLNVDAEN 451
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
+R+ + +K T + + G V G++ V +G+F+ IE + GL HVS
Sbjct: 452 ERLSLGIK---QLTPDPWSVIP-ATYRPGTRVRGKVTSVTDFGVFLEIEE-GIEGLVHVS 506
Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
ELS + V + + G+++ +L VD +++I+L +K+
Sbjct: 507 ELSREKVASPKDFASVGDELDAVVLSVDDVEKKIALSVKA 546
Score = 142 (55.0 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 45/130 (34%), Positives = 71/130 (54%)
Query: 1285 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1344
NL D Y+ ++ F + KL R V LS+RV + + R ++E L+NL G
Sbjct: 168 NL-DKYIGVTDR-FKVLKLNKKRGNIV--LSRRVLL----EEERAGVRTE--TLANLAEG 217
Query: 1345 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1404
G +K + YG F+ I + GL HV+++S + + + + G+K+ VKILK D+
Sbjct: 218 QTREGVVKNITDYGAFVDIGGVD--GLLHVTDMSWGRLGHPSEMLKPGDKLSVKILKYDQ 275
Query: 1405 EKRRISLGMK 1414
EK +ISLG+K
Sbjct: 276 EKGKISLGLK 285
Score = 134 (52.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 81/367 (22%), Positives = 147/367 (40%)
Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
T +++ G +G V + +GA V GGV L + MS + P + K G +L
Sbjct: 210 TLANLAEGQTREGVVKNITDYGAFVDI-GGVDGLLHVTDMSWGRLGHPSEMLKPGDKLSV 268
Query: 427 RVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
++L ++ I++ K+ LA+ + + DR+ G + + +G FV GV
Sbjct: 269 KILKYDQEKGKISLGLKQITPDPWLAVEQKF-QVGDRV--SGRVVSMTDYGAFVALDEGV 325
Query: 485 QGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXX 543
+G SE+ PS + VG V+ ++ +RRI+L +K + +
Sbjct: 326 EGLVHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRRISLG--LKQAQANP-WTQL 382
Query: 544 XXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD--- 600
+ G +G H++D + K + PG +
Sbjct: 383 EEKYPVGTKLEGQIKSITDFGVFIGVDEGIDGLVHVSD----ISWTKRIKHPGEVYAKGQ 438
Query: 601 --QLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
Q +VL D E+ L L K + +P A++ P + V G V ++ + G F+
Sbjct: 439 TVQAVVLNVDAENERLSLGIKQLTPDPWSVIP--ATY-RPGTRVRGKVTSVTDFGVFLEI 495
Query: 657 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK--QSCCSSTD 714
+ G S+ + A VG + + +L V+ +I LS+K Q+ +
Sbjct: 496 EEGIEGLVHVSELSREKVASPKDFASVGDELDAVVLSVDDVEKKIALSVKALQAAAEKAE 555
Query: 715 A-SFMQE 720
S+MQ+
Sbjct: 556 LESYMQD 562
Score = 108 (43.1 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 70/345 (20%), Positives = 138/345 (40%)
Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGV 431
G +V+GK+ G V GV+A P S+ ++ +PG +G F+VL +
Sbjct: 131 GGIVEGKITGKVKGGLTVDI--GVQAFLPA---SQVDL-RPGGNLDKYIGVTDRFKVLKL 184
Query: 432 KSKR--ITVTHKKTLVKSKLAILS-SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
KR I ++ + L + + + + + A + G + I +G FV GV G
Sbjct: 185 NKKRGNIVLSRRVLLEEERAGVRTETLANLAEGQTREGVVKNITDYGAFVDI-GGVDGLL 243
Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDXXXXXXXX 547
+++ PS M G + +I+ +I+L + P
Sbjct: 244 HVTDMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKISLGLKQITPDPWLAVEQKFQVGD 303
Query: 548 XXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFDQLLV- 604
+ +G +G + ++ L H + + +V G E + +++
Sbjct: 304 RVSGRVVSMTDYGAFVALDEGV-EGLVHVSEMSWTKRLRHPSDLLTV---GDEVETVVLG 359
Query: 605 LDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGF 663
+D + + L K + N QL +P + + G + +I + G F+ + G
Sbjct: 360 IDTGNRRISLGLKQAQANPWTQLEEK----YPVGTKLEGQIKSITDFGVFIGVDEGIDGL 415
Query: 664 APRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
S +R + Y GQ+V++ +L+V++E R++L +KQ
Sbjct: 416 VHVSDISWTKRIKHPGEVYAKGQTVQAVVLNVDAENERLSLGIKQ 460
Score = 91 (37.1 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 99/415 (23%), Positives = 157/415 (37%)
Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
G VVKGKV+ + + +V G K+ +P + EF +VG E V +
Sbjct: 47 GEVVKGKVVHISNDYVLVDI--GYKSEGSIP-VEEFLDEAGNLTVQVGDE----VKALFE 99
Query: 434 KRITVTHKKTLVKSKLAILSSY----AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 489
++ L K K LS++ A + I G IT K G V GVQ F P
Sbjct: 100 RKENQKGYAVLSKRKADRLSAWDSIDAAGGEGGIVEGKITGKVKGGLTVDI--GVQAFLP 157
Query: 490 RSELGLDPGCEPSSMYHVG---QVVKC-RIMSSIPASRRINLSFMMKPTRVSEDXXXXXX 545
S++ L PG V +V+K + +I SRR+ L R +E
Sbjct: 158 ASQVDLRPGGNLDKYIGVTDRFKVLKLNKKRGNIVLSRRVLLEEERAGVR-TETLANLAE 216
Query: 546 XXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
I G G + ++ L H + M +KPG + ++L
Sbjct: 217 GQTREGVVKNITDYGAFVDI--GGVDGLLHVTDMSWGRLGHPSEM---LKPGDKLSVKIL 271
Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
D E + L K I L + V G V ++ + G FV + G
Sbjct: 272 KYDQEKGKISLGLKQ--ITPDPWLAVEQK-FQVGDRVSGRVVSMTDYGAFVALDEGVEGL 328
Query: 664 APRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 722
S+ +R S VG V + +L +++ RI+L LKQ+ + + ++E +
Sbjct: 329 VHVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRRISLGLKQA--QANPWTQLEEKY 386
Query: 723 LLEEKI-AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 776
+ K+ ++S G + EG I+G VH S D + +VY
Sbjct: 387 PVGTKLEGQIKSITDFGVFIGVDEG------IDGLVHVS-DISWTKRIKHPGEVY 434
Score = 70 (29.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 750 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV 802
G+ + GKV DFGV + EE + G + +L+ V S G + A +L V
Sbjct: 476 GTRVRGKVTSVTDFGVFLEIEE--GIEGLVHVSELSREKVASPKDFASVGDELDAVVLSV 533
Query: 803 AKAERLVDLSLKTV 816
E+ + LS+K +
Sbjct: 534 DDVEKKIALSVKAL 547
Score = 49 (22.3 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1074 EPSEL-QEFQRRFHIGKAVTGHVLSINKEKKLL 1105
E +EL QE R H+G+ V G V+ I+ + L+
Sbjct: 32 EFAELFQESIRHHHVGEVVKGKVVHISNDYVLV 64
Score = 46 (21.3 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 1569 AFMLSMADVEKARSIAERALQTINIREENE 1598
A +LS+ DVEK +++ +ALQ + E E
Sbjct: 528 AVVLSVDDVEKKIALSVKALQAAAEKAELE 557
Score = 38 (18.4 bits), Expect = 9.8e-08, Sum P(3) = 9.8e-08
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 505 YHVGQVVKCRIM 516
+HVG+VVK +++
Sbjct: 44 HHVGEVVKGKVV 55
Score = 37 (18.1 bits), Expect = 4.7e-05, Sum P(3) = 4.7e-05
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 936 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 972
+ VG V + + + G G +H++E++
Sbjct: 299 FQVGDRVSGRVVSMTDYGAFVALDEGVEGLVHVSEMS 335
>TIGR_CMR|APH_0273 [details] [associations]
symbol:APH_0273 "ribosomal protein S1" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR002792 PROSITE:PS50926
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_504887.1 ProteinModelPortal:Q2GL64 STRING:Q2GL64
GeneID:3930767 KEGG:aph:APH_0273 PATRIC:20949120
BioCyc:APHA212042:GHPM-305-MONOMER Uniprot:Q2GL64
Length = 542
Score = 195 (73.7 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 48/174 (27%), Positives = 91/174 (52%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRK-----LDAKVLLSNLSDGYVESPEKEFPIGK 1302
+ L IV+G VK++T G FI + +D + ++++S V P F G+
Sbjct: 201 LSTLEEGSIVEGKVKSITKYGVFIEIHESPTVGVVDGLLHITDISWSRVSHPSAVFSCGQ 260
Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
V +++ ++ ++++ + +K + + E VG I G + +E YG+F+
Sbjct: 261 TVRAKIIRIDRENRKISLGVKQLEESPWANVE----ERYPVGSIHKGTVTSIEDYGIFVE 316
Query: 1363 IENTNLVGLCHVSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+E T + GL HVSE+S H+ + ++ GE+++VK+L +D K R+SL +K
Sbjct: 317 LE-TGVEGLIHVSEVSWVRSHLP-VNQLFMRGEEIEVKVLSIDATKNRMSLSIK 368
Score = 174 (66.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 38/119 (31%), Positives = 68/119 (57%)
Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
+GK R+L ++ V V+ K + + ++ + LS L G IV G++K + YG+
Sbjct: 163 LGKKQKFRILKMDKKQGNVVVSRKAVLEESLADAKDSFLSTLEEGSIVEGKVKSITKYGV 222
Query: 1360 FITIENTNLVG----LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
FI I + VG L H++++S V + ++ G+ V+ KI+++D+E R+ISLG+K
Sbjct: 223 FIEIHESPTVGVVDGLLHITDISWSRVSHPSAVFSCGQTVRAKIIRIDRENRKISLGVK 281
Score = 122 (48.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 45/177 (25%), Positives = 89/177 (50%)
Query: 1248 IEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES--PEKE-FPIGKL 1303
+E+ P I +G V ++ G F+ L ++ + +S +S +V S P + F G+
Sbjct: 291 VEERYPVGSIHKGTVTSIEDYGIFVELETGVEGLIHVSEVS--WVRSHLPVNQLFMRGEE 348
Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
+ +VLS++ R+ +++K ++ H VG IV ++K + + G+F++
Sbjct: 349 IEVKVLSIDATKNRMSLSIKR-----CKENPWEAFIEKHPVGSIVNTKVKSIGNLGMFVS 403
Query: 1363 I--ENTN--LVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ ++TN + GL +ELS ++ Y G+ ++ KIL V + +I LG+K
Sbjct: 404 LTDDDTNSGIEGLIRSTELSWSGSPESALKRYNIGDCLQAKILMVSANRNKIDLGVK 460
Score = 55 (24.4 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 24/104 (23%), Positives = 52/104 (50%)
Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
+GK +L ++K++ + +V R + ++++ + D+ + + EG IV G++ I
Sbjct: 163 LGKKQKFRILKMDKKQGNV-VVSRK---AVLEESLADAKDSFLSTLEEGSIVEGKVKSIT 218
Query: 1147 SGVGGLVVQI--GPHLY---GRVHFTELKNICVSDPLSGYDEGQ 1185
G+ ++I P + G +H T++ VS P + + GQ
Sbjct: 219 KY--GVFIEIHESPTVGVVDGLLHITDISWSRVSHPSAVFSCGQ 260
Score = 45 (20.9 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 37/132 (28%), Positives = 53/132 (40%)
Query: 676 DLSKTYYVGQSVRSNILDVNSETGRI---TLSLKQSCCSSTDASFMQEHF--LLEEKIAM 730
DL KT V S +LD G I T+ K S + DA E L E ++
Sbjct: 15 DLDKTDLA--DVLSELLDGGPREGEIIEGTVICKDSGYITVDAGLKSEGVVSLREFELGE 72
Query: 731 LQSSKHNGSELKW----VEGFIIGSVI---EGKVHESNDFGVVVSFEEHSDVYGFITHHQ 783
+ GS++K EG GSV+ E V + + + E+ D+ G I
Sbjct: 73 GKQDIEVGSKVKLYLEKTEGKS-GSVVLSREKAVRDELWQKLEQAAAENLDIEGVIFGSI 131
Query: 784 LAGATVESGSVI 795
G TV+ G V+
Sbjct: 132 KCGFTVDVGGVV 143
Score = 40 (19.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISR 1060
D+ +G +V Y+ K + + + +SR
Sbjct: 76 DIEVGSKVKLYLEKTEGKSGSVVLSR 101
>TIGR_CMR|CJE_0972 [details] [associations]
symbol:CJE_0972 "ribosomal protein S1" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 ProtClustDB:PRK06299
RefSeq:YP_178970.1 ProteinModelPortal:Q5HUR5 STRING:Q5HUR5
GeneID:3231483 KEGG:cjr:CJE0972 PATRIC:20043727 OMA:SRRYPQG
BioCyc:CJEJ195099:GJC0-992-MONOMER Uniprot:Q5HUR5
Length = 556
Score = 187 (70.9 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 49/182 (26%), Positives = 91/182 (50%)
Query: 1234 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVE 1292
LS P E + L ++ V N+ G F+ L ++ + +S +S D ++
Sbjct: 268 LSIKAALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIK 327
Query: 1293 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1352
+P+ G+ + V+ + P +R+ V+L+ SR + + + + D+V G+I
Sbjct: 328 NPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEF----MKSYKIADVVEGEIT 383
Query: 1353 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1412
V S+G F+ + + GL H + S D D + + G+K+KVKI+K+D+E ++ISL
Sbjct: 384 SVTSFGAFVKLGG--IEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLS 441
Query: 1413 MK 1414
K
Sbjct: 442 AK 443
Score = 178 (67.7 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 51/177 (28%), Positives = 94/177 (53%)
Query: 1243 KHLEKIEDLSPNMIVQGYVKNV-TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
K +E I++ N VK V +KG I++ D + L G+ E+ IG
Sbjct: 105 KVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDEN-DVEFFLPKSQYGFKETNNI---IG 160
Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
K +++ ++ + + V+ K + D R + INN++ D++ G +K++ +YG+
Sbjct: 161 KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQE--DLIEGIVKKITTYGM 218
Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
F+ + + GL H SE+S N T+Y+ G+KV VK++K DKE++ +SL +K++
Sbjct: 219 FVDVGGVD--GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAA 273
Score = 163 (62.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 51/214 (23%), Positives = 108/214 (50%)
Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM-IVQGYVK 1262
E + + TF V++ ++ D S S + D D K E I +++ +++G VK
Sbjct: 154 ETNNIIGKTFKVKI-IKIDKDEQSIIVSRKKTLD-DERRKRKELINNVAQQEDLIEGIVK 211
Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
+T+ G F+ + +D V S +S +P + G V +V+ + K + +++
Sbjct: 212 KITTYGMFVDVGG-VDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSI 270
Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-H 1381
K + SEI + L VGD + + +E YG F+ + N ++ G H+SE+S D +
Sbjct: 271 KAA--LPDPWSEIKD--TLDVGDTIKVIVSNIEPYGAFVDLGN-DIEGFLHISEISWDKN 325
Query: 1382 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
+ N + G+++ V++++++ +RR+ + +++
Sbjct: 326 IKNPKDYINKGQEIDVEVIEINPNERRLRVSLRN 359
Score = 146 (56.5 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 72/338 (21%), Positives = 134/338 (39%)
Query: 376 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
+++G V + ++G V GGV L +S V PG +K G ++ +V+ +R
Sbjct: 205 LIEGIVKKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKER 263
Query: 436 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI----TKIEKHGCFVRFYNGVQGFAPRS 491
H +K+ A+ ++E D L I + IE +G FV N ++GF S
Sbjct: 264 ---KHLSLSIKA--ALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHIS 318
Query: 492 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXX 550
E+ D + P + GQ + ++ P RR+ +S +R D
Sbjct: 319 EISWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPF-DEFMKSYKIADV 377
Query: 551 XXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNES 609
+ G +G + E + + K G + +++ +D E+
Sbjct: 378 VEGEITSVTSFGAFVKLGGIEGLLHNEDAS--WDRNDKCKDKFSQGDKIKVKIIKIDEEN 435
Query: 610 SNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
+ LSAK +NS+ + + IH +V G + +I + G FV + +
Sbjct: 436 QKISLSAKE--LNSSPV--QEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKED 491
Query: 669 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
+L +G + + I+ ++ + RI LS+K
Sbjct: 492 ISTSMLENLK----IGDDIEAAIVFIDEKKNRIRLSVK 525
Score = 118 (46.6 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 80/344 (23%), Positives = 136/344 (39%)
Query: 418 FKVGAELVFRVLGVKSKRITVTHKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGC 476
F VG + V+G + R ++HKK L K K + + +Y E D + T + K K G
Sbjct: 75 FNVGDSIKVAVMGSRGGRSLLSHKKALRKEKVIEFIKNYQENQDDIFTVKVVGK-NKGGL 133
Query: 477 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 536
V N V+ F P+S+ G E +++ +G+ K +I+ + I +S K T
Sbjct: 134 IVVDENDVEFFLPKSQYGFK---ETNNI--IGKTFKVKIIKIDKDEQSIIVS--RKKTLD 186
Query: 537 SEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVM--KSVIK 594
E + K + G D L H + + K +
Sbjct: 187 DE-----RRKRKELINNVAQQEDLIEGIVKKITTYGMFVDVGGVDGLVHYSEISYKGPVN 241
Query: 595 PG--Y-EFDQLLV----LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 647
PG Y E D++ V D E +L LS K +L + ++ D + + V NI
Sbjct: 242 PGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPDPWSEI-KDTLDV--GDTIKVIVSNI 298
Query: 648 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLK 706
G FV + GF S+ + K Y GQ + ++++N R+ +SL+
Sbjct: 299 EPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLR 358
Query: 707 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW--VEGFI 748
D FM+ + + + + S G+ +K +EG +
Sbjct: 359 NLLSRPFD-EFMKSYKIADVVEGEITSVTSFGAFVKLGGIEGLL 401
Score = 89 (36.4 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 26/114 (22%), Positives = 57/114 (50%)
Query: 1240 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1299
+P + KI + IV+G ++++ G F+ LS+ +DA + ++S +E+
Sbjct: 448 SPVQEYAKIHKVGD--IVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLEN----LK 501
Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ--SEINNLSNLHVGDIVIGQI 1351
IG + ++ ++ R+ +++K + +EINN + +GDI+ Q+
Sbjct: 502 IGDDIEAAIVFIDEKKNRIRLSVKNLVRIKEREVLNEINNDDKVTLGDIIKDQL 555
Score = 80 (33.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 25/102 (24%), Positives = 55/102 (53%)
Query: 726 EKIAMLQSSKHNGSELK-WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL 784
+KI+ L + + N S ++ + + +G +++G + + DFGV V ++ D I +
Sbjct: 436 QKIS-LSAKELNSSPVQEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDA--LIHKEDI 492
Query: 785 AGATVES---GSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
+ + +E+ G I+AAI+ + + + + LS+K + + RE
Sbjct: 493 STSMLENLKIGDDIEAAIVFIDEKKNRIRLSVKNLVRIKERE 534
Score = 56 (24.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 936 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 995
+ VG +V+ I +IK + ++ IH K ++ ++ N KIG + A
Sbjct: 457 HKVGDIVKGTIRDIKDFGVFVELSKNVDALIH-------KEDISTSMLENLKIGDDIEAA 509
Query: 996 IIAKSNKPDMKKSFLWELSIKPSMLTVSE 1024
I+ D KK+ + LS+K +++ + E
Sbjct: 510 IVFI----DEKKNRI-RLSVK-NLVRIKE 532
Score = 54 (24.1 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 15/68 (22%), Positives = 31/68 (45%)
Query: 451 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 510
+L ++ ++ + T G I +I+ +V +G SE+ G +++VG
Sbjct: 24 LLEAFDKSREEATTEGVIVEIKNDEVYVDIGKKSEGILALSEI---QGDNSKLLFNVGDS 80
Query: 511 VKCRIMSS 518
+K +M S
Sbjct: 81 IKVAVMGS 88
Score = 50 (22.7 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 946 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 988
I EIK E+ + G G + ++E+ D S ++ N+ + K+
Sbjct: 41 IVEIKNDEVYVDIGKKSEGILALSEIQGDNSKLLFNVGDSIKV 83
Score = 42 (19.8 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 16/79 (20%), Positives = 34/79 (43%)
Query: 752 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAK 804
+IEG V + +G+ F + V G + + +++ G + G + ++ K
Sbjct: 205 LIEGIVKKITTYGM---FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDK 261
Query: 805 AERLVDLSLKTVFIDRFRE 823
+ + LS+K D + E
Sbjct: 262 ERKHLSLSIKAALPDPWSE 280
Score = 40 (19.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 1080 EFQRRFHIGKAVTGHVLSINKEKKLLRLV-LRPFQDGISDKTVDISNDNMQTFIHEGDIV 1138
EF + + I V G + S+ ++L + D + D ND + +GD +
Sbjct: 367 EFMKSYKIADVVEGEITSVTSFGAFVKLGGIEGLLHN-EDASWD-RNDKCKDKFSQGDKI 424
Query: 1139 GGRISKI 1145
+I KI
Sbjct: 425 KVKIIKI 431
>TIGR_CMR|NSE_0408 [details] [associations]
symbol:NSE_0408 "ribosomal protein S1" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR InterPro:IPR022967 SMART:SM00316
eggNOG:COG0539 HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW
RefSeq:YP_506295.1 ProteinModelPortal:Q2GE01 STRING:Q2GE01
GeneID:3932255 KEGG:nse:NSE_0408 PATRIC:22680873
ProtClustDB:CLSK2527828 BioCyc:NSEN222891:GHFU-431-MONOMER
Uniprot:Q2GE01
Length = 553
Score = 188 (71.2 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 48/162 (29%), Positives = 88/162 (54%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
V G + GC + + L+A + S+L V P +G + R+L ++P +
Sbjct: 132 VMGVILYTIKSGCIVEVEG-LNAFLPNSHLDVRPVSDPATL--VGVKLKFRILKMDPKTG 188
Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG----LC 1372
++ V+ + + + +S + GDI+ G++K + SYG+F+ I ++ VG L
Sbjct: 189 KIFVSRRKALGAVHEAARSEYISTIKEGDIIDGRVKSIASYGVFVQIHESDKVGVVDGLL 248
Query: 1373 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+V+++S V + +IY G++V+VK++ VD EK RISLG+K
Sbjct: 249 YVNDISWARVTHPSSIYSVGQEVRVKVIAVDPEKGRISLGVK 290
Score = 158 (60.7 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 46/175 (26%), Positives = 90/175 (51%)
Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIML--SRKL---DAKVLLSNLSDGYVESPEKEFPI 1300
E I + I+ G VK++ S G F+ + S K+ D + ++++S V P + +
Sbjct: 208 EYISTIKEGDIIDGRVKSIASYGVFVQIHESDKVGVVDGLLYVNDISWARVTHPSSIYSV 267
Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGL 1359
G+ V +V++V+P R+ + +K +++ ++S + G++ G + VE YG+
Sbjct: 268 GQEVRVKVIAVDPEKGRISLGVKQ-----LTENPWKDVSKKYTPGNVYPGVVTSVEDYGI 322
Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
F+ +E + GL H E+S + ++ KV V +L VD+E +I+L +K
Sbjct: 323 FVRLEE-GVEGLVHSGEISWTRE---KPLFLPNSKVNVMLLSVDEEGHKIALSVK 373
Score = 133 (51.9 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 77/345 (22%), Positives = 136/345 (39%)
Query: 377 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSK 434
V G ++ G IV+ G + A P H+ + P VG +L FR+L + K+
Sbjct: 132 VMGVILYTIKSGCIVEVEG-LNAFLPNSHLDVRPVSDPATL--VGVKLKFRILKMDPKTG 188
Query: 435 RITVTHKKTLVKSKLAILSSYAEAT-DRLITHGWITKIEKHGCFVRFYNG-----VQGFA 488
+I V+ +K L A S Y + I G + I +G FV+ + V G
Sbjct: 189 KIFVSRRKALGAVHEAARSEYISTIKEGDIIDGRVKSIASYGVFVQIHESDKVGVVDGLL 248
Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXX 548
+++ PSS+Y VGQ V+ ++++ P RI+L +D
Sbjct: 249 YVNDISWARVTHPSSIYSVGQEVRVKVIAVDPEKGRISLGVKQLTENPWKDVSKKYTPGN 308
Query: 549 XXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDN 607
+ +G + + ++ E K + P + + LL +D
Sbjct: 309 VYPGVVTSVEDYGIFVRLEEGVEGLVHSGEISWTRE-----KPLFLPNSKVNVMLLSVDE 363
Query: 608 ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL----GRLTGF 663
E + LS K N ++ DA + VV V I ++G + L + G+
Sbjct: 364 EGHKIALSVKQCSDNPWKKF-LDAYGL--GVVVKCKVVEITDSGIVLTLLDPGYSYVRGY 420
Query: 664 APRSKAVDGQ--RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
+ Q R +L K + +G V + ++ VN + GR+ ++K
Sbjct: 421 VRLANISWSQNPRKEL-KRFTIGDEVEAKLVHVNPDRGRVMFNIK 464
Score = 127 (49.8 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 84/372 (22%), Positives = 151/372 (40%)
Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
F+ S ++ G +V+G + ++ +V G+K+ +P + +F + G +VG++++
Sbjct: 38 FSDSLIREGDMVEGVIKSISPHFVLVNL--GLKSEGKIP-VQQFHDL--GT-LEVGSKII 91
Query: 426 FRVLGVK--SKRITVTHKKTLVKSKL--AILSSYAEATDRLITHGWITKIEKHGCFVRFY 481
V + S + +++ K L K K+ + Y +D + G I K GC V
Sbjct: 92 VYVEKTETGSGNLVLSYTKAL-KQKVWNRLYEMYLNGSDEDVM-GVILYTIKSGCIVEV- 148
Query: 482 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP------ASRRINLSFMMKPTR 535
G+ F P S L + P +P+++ VG +K RI+ P SRR L + + R
Sbjct: 149 EGLNAFLPNSHLDVRPVSDPATL--VGVKLKFRILKMDPKTGKIFVSRRKALGAVHEAAR 206
Query: 536 VSEDXXXXXXXXXXXXXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVM--KSVI 593
SE I + G + + + A V S+
Sbjct: 207 -SEYISTIKEGDIIDGRVKSIASYGVFVQIHESDKVGVVDGLLYVNDISWARVTHPSSIY 265
Query: 594 KPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 652
G E +++ +D E + L K N + + + P +V G V ++ + G
Sbjct: 266 SVGQEVRVKVIAVDPEKGRISLGVKQLTENPWKDVSKKYT---PGNVYPGVVTSVEDYGI 322
Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS-VRSNILDVNSETGRITLSLKQSCCS 711
FVR + G S + R K ++ S V +L V+ E +I LS+KQ C
Sbjct: 323 FVRLEEGVEGLV-HSGEISWTR---EKPLFLPNSKVNVMLLSVDEEGHKIALSVKQ-CSD 377
Query: 712 STDASFMQEHFL 723
+ F+ + L
Sbjct: 378 NPWKKFLDAYGL 389
Score = 70 (29.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 32/132 (24%), Positives = 60/132 (45%)
Query: 1239 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK----LDAKVLLSNLSDGYVESP 1294
D P K ++ ++V+ V +T G + L + V L+N+S + ++P
Sbjct: 377 DNPWKKF--LDAYGLGVVVKCKVVEITDSGIVLTLLDPGYSYVRGYVRLANIS--WSQNP 432
Query: 1295 EKE---FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1351
KE F IG V +++ V P RV +K + + +S ++ DI+ ++
Sbjct: 433 RKELKRFTIGDEVEAKLVHVNPDRGRVMFNIKYVEYDPFEEF----ISRVNEKDIINAKV 488
Query: 1352 KRVESYGLFITI 1363
RVE G++I +
Sbjct: 489 IRVEDDGIYIEV 500
Score = 54 (24.1 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 727 KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE--HSDVYGFI 779
KIA+ + K+++ + +G V++ KV E D G+V++ + +S V G++
Sbjct: 367 KIALSVKQCSDNPWKKFLDAYGLGVVVKCKVVEITDSGIVLTLLDPGYSYVRGYV 421
Score = 48 (22.0 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 1189 LSGYDEGQFVKCKVLEIS 1206
L Y G VKCKV+EI+
Sbjct: 384 LDAYGLGVVVKCKVVEIT 401
Score = 44 (20.5 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 939 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 973
G +V+ I I P + + G+ G+I + + +D
Sbjct: 46 GDMVEGVIKSISPHFVLVNLGLKSEGKIPVQQFHD 80
Score = 44 (20.5 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 27/115 (23%), Positives = 49/115 (42%)
Query: 953 ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1012
EL+ +F IG + VN D+ V+ N+ + + I++ N+ D+ + +
Sbjct: 435 ELK-RFTIGDEVEAKLVHVNPDRGRVMFNI--KY-VEYDPFEEFISRVNEKDIINAKVIR 490
Query: 1013 LSIKPSMLTVSEIGSKLLFEECDVS---IGQRVTGYVYKVDNEWALLTISRHLKA 1064
+ + V E G + + DVS +GQ ++ V D+ L I KA
Sbjct: 491 VEDDGIYIEVRE-GLEFFTAQSDVSRLTVGQHLSFVVCSKDHYSVKLEIITDEKA 544
Score = 39 (18.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 1118 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV---HFTELKNICV 1174
D T + + I EGD+V G I I ++V +G G++ F +L + V
Sbjct: 29 DFTTILEERFSDSLIREGDMVEGVIKSISPHF--VLVNLGLKSEGKIPVQQFHDLGTLEV 86
Query: 1175 SDPLSGYDE 1183
+ Y E
Sbjct: 87 GSKIIVYVE 95
>TIGR_CMR|CPS_2335 [details] [associations]
symbol:CPS_2335 "ribosomal protein S1" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 RefSeq:YP_269055.1 ProteinModelPortal:Q482G3
SMR:Q482G3 STRING:Q482G3 GeneID:3519189 KEGG:cps:CPS_2335
PATRIC:21467761 BioCyc:CPSY167879:GI48-2400-MONOMER Uniprot:Q482G3
Length = 553
Score = 178 (67.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 88/360 (24%), Positives = 166/360 (46%)
Query: 1073 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1132
+E S L+E + R G + G ++++NK+ ++ G+ ++V IS D +
Sbjct: 9 FEES-LKEIETR--PGSIIRGTIVAVNKDNVIV-------DAGLKSESV-ISIDQFKNAA 57
Query: 1133 HEGDIV-GGRISKILS----GVGGLVV---QIGPHLYGRV--HFTELKNICVSDPLSGYD 1182
E ++V G I L G G ++ + H +V E K + ++G
Sbjct: 58 GEVEVVVGDEIDVALDATDDGFGETILSREKAKRHEAWQVLEKAYEEKETVIG-VINGKV 116
Query: 1183 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE---LSLRS-SLDGMSSTNSSDLSTDV 1238
+G F + D F+ ++++ R VR T H+E L + LD + +
Sbjct: 117 KGGFT-VEVSDIRAFLPGSLVDV-RPVRDTAHLEGKPLEFKVIKLDQKRNNVVVSRRAVI 174
Query: 1239 DTPG--KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1296
+ G + E +E L+ V+G VKN+T G F+ L +D + +++++ V+ P +
Sbjct: 175 EAEGSAERDELLESLAEGQEVKGIVKNLTDYGAFVDLGG-IDGLLHITDMAWKRVKHPSE 233
Query: 1297 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1356
+G + +VL + RV + +K + + + G + G++ +
Sbjct: 234 IVNVGDEIQVKVLKFDRERTRVSLGMK----QLGEDPWVAIANRYPEGSKLSGRVTNLTD 289
Query: 1357 YGLFITIENTNLVGLCHVSELSEDHVDNIET--IYRAGEKVKVKILKVDKEKRRISLGMK 1414
YG F+ I+ + GL HVSE+ + NI + G+ V+V +L++D+E+RRISLG+K
Sbjct: 290 YGCFVEIQE-GVEGLVHVSEMDWTN-KNIHPSKVVNLGDTVEVLVLEIDEERRRISLGLK 347
Score = 177 (67.4 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 49/172 (28%), Positives = 89/172 (51%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
+ G V N+T GCF+ + ++ V +S + P K +G V VL ++
Sbjct: 280 LSGRVTNLTDYGCFVEIQEGVEGLVHVSEMDWTNKNIHPSKVVNLGDTVEVLVLEIDEER 339
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
+R+ + LK A+ E N + GD V G+IK + +G+FI ++ + GL H+S
Sbjct: 340 RRISLGLKQC---IANPWE-EFAKNFNKGDKVSGKIKSITDFGIFIGLDG-GIDGLVHLS 394
Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
++S + Y+ G+++ +L+VD E+ RISLG+K + ++D N+ +
Sbjct: 395 DISWAGGEEAVRDYKKGDEIDAIVLQVDPERERISLGVKQA--EDDPFNMYL 444
Score = 174 (66.3 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 46/167 (27%), Positives = 90/167 (53%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
V G +K++T G FI L +D V LS++S E +++ G + VL V+P +
Sbjct: 367 VSGKIKSITDFGIFIGLDGGIDGLVHLSDISWAGGEEAVRDYKKGDEIDAIVLQVDPERE 426
Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
R+ + +K ++ + L++ G IV G++ V++ G I + + + G VS+
Sbjct: 427 RISLGVKQAEDDPFNMY----LADKKKGAIVTGKVTEVDAKGATILLAES-VEGYLRVSD 481
Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
+S + +++ T+ + G+ V+ + + VD++ R ISL +K+ K+ AD
Sbjct: 482 ISVERIEDASTVLKVGDDVEARFMGVDRKNRTISLSIKA---KDQAD 525
Score = 171 (65.3 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 81/340 (23%), Positives = 139/340 (40%)
Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
G VKG V + +GA V GG+ L + M+ + P + VG E+ +VL
Sbjct: 192 GQEVKGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRVKHPSEIVNVGDEIQVKVLKFDR 250
Query: 434 KRITVT-HKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
+R V+ K L + +AI + Y E + +L G +T + +GCFV GV+G S
Sbjct: 251 ERTRVSLGMKQLGEDPWVAIANRYPEGS-KL--SGRVTNLTDYGCFVEIQEGVEGLVHVS 307
Query: 492 ELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXX 550
E+ + PS + ++G V+ ++ RRI+L +K ++
Sbjct: 308 EMDWTNKNIHPSKVVNLGDTVEVLVLEIDEERRRISLG--LKQC-IANPWEEFAKNFNKG 364
Query: 551 XXXXXXXXXXXXXXIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQLLV-LDN 607
I G G HL+D + A ++V K G E D +++ +D
Sbjct: 365 DKVSGKIKSITDFGIFIGLDGGIDGLVHLSD-ISWAGGEEAVRDYKKGDEIDAIVLQVDP 423
Query: 608 ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 667
E + L K + + +D ++V G V + G + + G+ R
Sbjct: 424 ERERISLGVKQAEDDPFNMYLADKKK---GAIVTGKVTEVDAKGATILLAESVEGYL-RV 479
Query: 668 KAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
+ +R D S VG V + + V+ + I+LS+K
Sbjct: 480 SDISVERIEDASTVLKVGDDVEARFMGVDRKNRTISLSIK 519
Score = 101 (40.6 bits), Expect = 9.4e-06, Sum P(3) = 9.4e-06
Identities = 79/394 (20%), Positives = 151/394 (38%)
Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
G V G + V A + PG + + P+ + E KP +FKV R V S
Sbjct: 114 GKVKGGFTVEVSDIRAFL--PGSLVDVRPVRDTAHLE-GKP-LEFKVIKLDQKRNNVVVS 169
Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
+R + + + + +L L S AE + G + + +G FV G+ G +++
Sbjct: 170 RRAVIEAEGSAERDEL--LESLAEGQE---VKGIVKNLTDYGAFVDL-GGIDGLLHITDM 223
Query: 494 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDXXXXXXXXXXXXXX 553
PS + +VG ++ +++ R++L MK ++ ED
Sbjct: 224 AWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLG--MK--QLGEDPWVAIANRYPEGSK 279
Query: 554 XXXXXXXXXXX-----IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDN 607
I +G +G + + D V+ G + L++ +D
Sbjct: 280 LSGRVTNLTDYGCFVEIQEGV-EGLVHVSEM-DWTNKNIHPSKVVNLGDTVEVLVLEIDE 337
Query: 608 ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 667
E + L K + N ++ A + + V G + +I + G F+ G + G S
Sbjct: 338 ERRRISLGLKQCIANPWEEF---AKNFNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLS 394
Query: 668 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 727
+ + Y G + + +L V+ E RI+L +KQ+ D F +L ++K
Sbjct: 395 DISWAGGEEAVRDYKKGDEIDAIVLQVDPERERISLGVKQA----EDDPFNM--YLADKK 448
Query: 728 IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 761
+ + K + K ++ +EG + S+
Sbjct: 449 KGAIVTGKVTEVDAKGAT-ILLAESVEGYLRVSD 481
Score = 88 (36.0 bits), Expect = 9.4e-06, Sum P(3) = 9.4e-06
Identities = 21/94 (22%), Positives = 47/94 (50%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+ D IV G V V +KG I+L+ ++ + +S++S +E +G V R
Sbjct: 444 LADKKKGAIVTGKVTEVDAKGATILLAESVEGYLRVSDISVERIEDASTVLKVGDDVEAR 503
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1341
+ V+ ++ + +++K D ++ ++NL+ +
Sbjct: 504 FMGVDRKNRTISLSIKAKDQADEREA-MDNLNQV 536
Score = 51 (23.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 399
+ +PG +++G ++AV+ IV G+K+
Sbjct: 17 ETRPGSIIRGTIVAVNKDNVIVD--AGLKS 44
Score = 41 (19.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 5/23 (21%), Positives = 16/23 (69%)
Query: 147 IDVKPGLLLQGVVRSIDRTRKVV 169
I+ +PG +++G + ++++ +V
Sbjct: 16 IETRPGSIIRGTIVAVNKDNVIV 38
>TAIR|locus:2145860 [details] [associations]
symbol:RPS1 "ribosomal protein S1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0003723 GO:GO:0005840
GO:GO:0009579 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945
EMBL:AF370232 EMBL:AY059914 EMBL:AY088230 EMBL:AY142540
IPI:IPI00524792 RefSeq:NP_850903.1 UniGene:At.24389
ProteinModelPortal:Q93VC7 SMR:Q93VC7 STRING:Q93VC7
World-2DPAGE:0003:Q93VC7 PRIDE:Q93VC7 ProMEX:Q93VC7
EnsemblPlants:AT5G30510.1 GeneID:833138 KEGG:ath:AT5G30510
TAIR:At5g30510 HOGENOM:HOG000232530 InParanoid:Q93VC7 OMA:SEISHEH
PhylomeDB:Q93VC7 ProtClustDB:CLSN2680335 ArrayExpress:Q93VC7
Genevestigator:Q93VC7 Uniprot:Q93VC7
Length = 416
Score = 159 (61.0 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 40/115 (34%), Positives = 68/115 (59%)
Query: 1302 KLVAGRVLSVE-PLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGL 1359
K A +L E PL K VEV + + +++ + ++ + L +G +V+G ++ ++ YG
Sbjct: 221 KAAAEELLEKEIPL-KFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGA 279
Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
FI I N GL HVS++S D V +I T+ + G+ +KV IL D+++ R+SL K
Sbjct: 280 FIDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTK 332
Score = 60 (26.2 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 37/158 (23%), Positives = 66/158 (41%)
Query: 1021 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1080
TV + + + + + IG RV G V+K D AL+ IS A L + + + E
Sbjct: 81 TVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDISAKSSAYLSVEQACIHRIKHVE 140
Query: 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1140
+ G ++ N+ L L LR Q +++ + + E IV
Sbjct: 141 -EAGIVPGMVEEFVIIGENESDDSLLLSLRNIQ-------YELAWERCRQLQAEDVIVKA 192
Query: 1141 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1178
++ I + GGLV + L G V F+++ + ++ L
Sbjct: 193 KV--IGANKGGLVALV-EGLRGFVPFSQISSKAAAEEL 227
Score = 60 (26.2 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 50/205 (24%), Positives = 83/205 (40%)
Query: 306 STPVSTPAYVTISDVAEEEVRKLE-KKYKEGSCVRVRILGFRHLEGLATGILK-ASAFEG 363
S VS ++ + + +LE KK E + R R +EG+A + A+A E
Sbjct: 35 SASVSPTIVAAVAMSSGQTKERLELKKMFEDAYERCRT---SPMEGVAFTVDDFAAAIEQ 91
Query: 364 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG------GVKALC--PLPHMSEFEIVKPG 415
F +S++ G VKG V D+ GA+V V+ C + H+ E IV PG
Sbjct: 92 YDF-NSEI--GTRVKGTVFKTDANGALVDISAKSSAYLSVEQACIHRIKHVEEAGIV-PG 147
Query: 416 KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 475
+ E V ++G ++ ++ +LA + +I + K G
Sbjct: 148 ----MVEEFV--IIGENESDDSLLLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGG 201
Query: 476 CFVRFYNGVQGFAPRSELGLDPGCE 500
V G++GF P S++ E
Sbjct: 202 -LVALVEGLRGFVPFSQISSKAAAE 225
Score = 45 (20.9 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 140 NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD-PDTVSKCVTKDLKGIS 190
N +N V P ++ V S +T++ + L D +C T ++G++
Sbjct: 29 NFPQNKSASVSP-TIVAAVAMSSGQTKERLELKKMFEDAYERCRTSPMEGVA 79
Score = 41 (19.5 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 882 TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLL 914
++ FPQ + + I +A+ S T RL L
Sbjct: 27 SKNFPQNKSASVSPTIVAAVAMSSGQTKERLEL 59
Score = 39 (18.8 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 16/74 (21%), Positives = 35/74 (47%)
Query: 749 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH---HQLAG---ATVESGSVIQAAILDV 802
IG+ ++G V +++ G +V S Y + H++ A + G V + I+
Sbjct: 98 IGTRVKGTVFKTDANGALVDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGE 157
Query: 803 AKAERLVDLSLKTV 816
+++ + LSL+ +
Sbjct: 158 NESDDSLLLSLRNI 171
>TIGR_CMR|ECH_0402 [details] [associations]
symbol:ECH_0402 "putative ribosomal protein S1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_507222.1 ProteinModelPortal:Q2GH61 STRING:Q2GH61
GeneID:3927480 KEGG:ech:ECH_0402 PATRIC:20576281
BioCyc:ECHA205920:GJNR-403-MONOMER Uniprot:Q2GH61
Length = 567
Score = 189 (71.6 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 49/174 (28%), Positives = 94/174 (54%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRK-----LDAKVLLSNLSDGYVESPEKEFPIGK 1302
+ L+ I++G VK++T G FI + +D + ++++S V P F G+
Sbjct: 225 LSQLNEGDIIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQ 284
Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFI 1361
V +++ ++ +K++ + +K + +S +N+ + V I G + +E YG+F+
Sbjct: 285 TVKTKIIKIDRENKKISLGVKQLE-----ESPWSNIEKKYPVDSIHKGIVTSIEEYGVFV 339
Query: 1362 TIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+E T + GL HVSE+S + I ++ GE+++VK+L +D K R+SL MK
Sbjct: 340 ELE-TGIEGLVHVSEVSWTKNSLPINQLFMRGEEIQVKVLSIDTAKSRMSLSMK 392
Score = 179 (68.1 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 38/119 (31%), Positives = 69/119 (57%)
Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
+GK R+L ++ + V+ K + + ++ LS L+ GDI+ G++K + YG+
Sbjct: 187 LGKKQKFRILKMDKKQGNIVVSRKAILEESLADAKSLYLSQLNEGDIIEGKVKSITKYGV 246
Query: 1360 FITIENTNLVG----LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
FI I + VG L H++++S V + ++ G+ VK KI+K+D+E ++ISLG+K
Sbjct: 247 FIEIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVKTKIIKIDRENKKISLGVK 305
Score = 40 (19.1 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 968 ITEVNDDKSNVVENLFSNFKIGQTVTAR-IIA 998
+ E + K +V +FS+ K G TV + ++A
Sbjct: 137 LEEAAEKKEDVEGVIFSSIKCGYTVDIKGVVA 168
Score = 39 (18.8 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 149 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 208
VK G +++G + ID+ Y++ D S+ + LK + + + ++V+ L
Sbjct: 57 VKEGQIIEGTIICIDKG----YVTIDSGLKSESIVS-LKEFELGDDYQNISIGSKVKLYL 111
Query: 209 E 209
E
Sbjct: 112 E 112
>TAIR|locus:2095203 [details] [associations]
symbol:AT3G23700 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP;RCA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006098 "pentose-phosphate
shunt" evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009773 "photosynthetic electron transport in photosystem I"
evidence=RCA] [GO:0009902 "chloroplast relocation" evidence=RCA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0015995 "chlorophyll biosynthetic process" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0042742 "defense response to
bacterium" evidence=RCA] [GO:0042793 "transcription from plastid
promoter" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0005634 GO:GO:0009570 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009409 EMBL:AP000377 GO:GO:0003723
GO:GO:0005840 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 UniGene:At.6667
eggNOG:COG0539 EMBL:AY049283 EMBL:AY139796 IPI:IPI00535895
RefSeq:NP_566737.1 ProteinModelPortal:Q9LK47 SMR:Q9LK47
IntAct:Q9LK47 STRING:Q9LK47 PaxDb:Q9LK47 PRIDE:Q9LK47
EnsemblPlants:AT3G23700.1 GeneID:821951 KEGG:ath:AT3G23700
TAIR:At3g23700 HOGENOM:HOG000264640 InParanoid:Q9LK47 OMA:GLYHLTG
PhylomeDB:Q9LK47 ProtClustDB:CLSN2688704 Genevestigator:Q9LK47
Uniprot:Q9LK47
Length = 392
Score = 163 (62.4 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 42/128 (32%), Positives = 69/128 (53%)
Query: 1292 ESPEKEF-PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ 1350
+ P+K I K + G L V+ + E + A + + N++VGD+ G+
Sbjct: 145 KEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQ--NVNVGDVFNGR 202
Query: 1351 IKRVESYGLFITIENTN----LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1406
+ VE YG FI + + L GL HVSE+S D+V ++ + R G++V+V + +DKEK
Sbjct: 203 VGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEK 262
Query: 1407 RRISLGMK 1414
RI+L +K
Sbjct: 263 SRITLSIK 270
>TIGR_CMR|BA_5132 [details] [associations]
symbol:BA_5132 "general stress protein 13" species:198094
"Bacillus anthracis str. Ames" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006950 "response to stress" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681
PROSITE:PS50126 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07570 ProtClustDB:PRK08059 RefSeq:NP_847318.1
RefSeq:YP_021786.1 RefSeq:YP_031013.1 ProteinModelPortal:Q81K73
DNASU:1084499 EnsemblBacteria:EBBACT00000012496
EnsemblBacteria:EBBACT00000016095 EnsemblBacteria:EBBACT00000023270
GeneID:1084499 GeneID:2815743 GeneID:2848785 KEGG:ban:BA_5132
KEGG:bar:GBAA_5132 KEGG:bat:BAS4770 OMA:ETPDHTE
BioCyc:BANT260799:GJAJ-4848-MONOMER
BioCyc:BANT261594:GJ7F-5009-MONOMER Uniprot:Q81K73
Length = 114
Score = 142 (55.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 24/73 (32%), Positives = 48/73 (65%)
Query: 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1403
G +V G++ ++ YG F+ ++ GL H+SE++ +V +I + G+ V+VK+L +D
Sbjct: 8 GVVVTGKVTGIQDYGAFVALD-AETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVLSID 66
Query: 1404 KEKRRISLGMKSS 1416
+E R++SL +K++
Sbjct: 67 EEHRKMSLSLKAA 79
>POMBASE|SPAC10F6.02c [details] [associations]
symbol:prp22 "ATP-dependent RNA helicase Prp22"
species:4896 "Schizosaccharomyces pombe" [GO:0000390 "spliceosomal
complex disassembly" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR003029 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690
PROSITE:PS50126 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
PomBase:SPAC10F6.02c GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005681 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643
InterPro:IPR011709 Pfam:PF07717 GO:GO:0004004 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GO:GO:0000390 KO:K12818
OMA:NAWCYEN PIR:T37496 RefSeq:NP_593253.1 ProteinModelPortal:O42643
IntAct:O42643 STRING:O42643 PRIDE:O42643
EnsemblFungi:SPAC10F6.02c.1 GeneID:2542978 KEGG:spo:SPAC10F6.02c
OrthoDB:EOG45TGW9 NextBio:20804011 Uniprot:O42643
Length = 1168
Score = 125 (49.1 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 64/258 (24%), Positives = 116/258 (44%)
Query: 1172 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE-LSLRSSLDGMSSTN 1230
I + D YDE + + LS G+F + ISR ++ + + + +G +S N
Sbjct: 36 INLHDQSKNYDEFKNNVLSC--GGEFTDSFLQNISRLIKEIKPKDDIPTDNVNNGSNSVN 93
Query: 1231 --SSDL-STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1287
S DL S DVD +H K + P + + N+ + ++ +D LS L+
Sbjct: 94 GASHDLDSKDVDK--QHQRK---MFPGLSIPNSTNNLRDRPA--LMDNAMDELEELSTLA 146
Query: 1288 -----DGYVESPEKEFPIGKLVAGRVLSVEPL---SKRVEVTLKTSDSRTASQSEINNLS 1339
D E+ + G + R S+ P R ++ ++ SR+ S+ + N
Sbjct: 147 KTRRNDRDSRRDERHYLNG-IRERRERSISPSFSHHSRTSISGQSHSSRS-SRGPLLNAP 204
Query: 1340 NLHVGDIVIGQIKRVESYGLFITIEN--TNLVGLCHVSELS-EDHVDNIETIYRAGEKVK 1396
L+ G I G + ++ +G F+T++ GL H+S + +D+ G+ V
Sbjct: 205 TLY-G-IYSGVVSGIKDFGAFVTLDGFRKRTDGLVHISNIQLNGRLDHPSEAVSYGQPVF 262
Query: 1397 VKILKVDKEKRRISLGMK 1414
VK++++D+ +RISL MK
Sbjct: 263 VKVIRIDESAKRISLSMK 280
Score = 88 (36.0 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 23/87 (26%), Positives = 44/87 (50%)
Query: 1574 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1633
MAD +++ + ++ + E L+I +A ++ N + P E+ QRA Q+ +
Sbjct: 926 MADFPMEPQLSKVLITSVELGCSEEMLSI-IAMLSVPNIWSRPREKQQEADRQRA-QFAN 983
Query: 1634 PKKVHLALLGLYERTEQNKLADELLYK 1660
P+ HL LL +Y + N+ +D Y+
Sbjct: 984 PESDHLTLLNVYTTWKMNRCSDNWCYE 1010
>TIGR_CMR|CHY_1925 [details] [associations]
symbol:CHY_1925 "hydroxymethylbutenyl pyrophosphate
reductase/ribosomal protein S1" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0015968 "stringent response"
evidence=ISS] [GO:0042380 "hydroxymethylbutenyl pyrophosphate
reductase activity" evidence=ISS] [GO:0046677 "response to
antibiotic" evidence=ISS] HAMAP:MF_00191 InterPro:IPR000110
InterPro:IPR003029 InterPro:IPR003451 Pfam:PF00575 Pfam:PF02401
PRINTS:PR00681 PROSITE:PS50126 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0016491 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 GO:GO:0051538 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0019288 GO:GO:0050992 KO:K03527 TIGRFAMs:TIGR00216
eggNOG:COG0761 KO:K02945 RefSeq:YP_360744.1
ProteinModelPortal:Q3AAU0 STRING:Q3AAU0 GeneID:3726742
KEGG:chy:CHY_1925 PATRIC:21276941 HOGENOM:HOG000057927 OMA:KLIEDPW
ProtClustDB:PRK00087 BioCyc:CHYD246194:GJCN-1924-MONOMER
Uniprot:Q3AAU0
Length = 653
Score = 153 (58.9 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 47/160 (29%), Positives = 75/160 (46%)
Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
+K G VKGKV + FGA V GG + L +S V+P + +VG EL VL
Sbjct: 461 LKEGSKVKGKVTKIMPFGAFVDL-GGFEGLLRAQDISWQRNVRPEEHLQVGQELEVVVLE 519
Query: 431 VKSKRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 489
V + V+ K L + E + + G + KI +HG + + G++G+ P
Sbjct: 520 VDRHNLKVSLGLKQLTPDPWQKIPD--ELKEGAVLEGTVVKILRHGLILELFPGIEGYLP 577
Query: 490 RSELGLDPGCEP-SSMYHVGQVVKCRIMSSIPASRRINLS 528
E + EP Y VGQ ++ +I++ P +++ LS
Sbjct: 578 ARETEAEN--EPLMKKYQVGQKMEVKILTLKPLEKKMTLS 615
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 146 (56.5 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 66/266 (24%), Positives = 114/266 (42%)
Query: 1549 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN-IREENE---KLNIWV 1604
++E V+++P++ W Y+ + S AD + R + ERA+ I I+E+ + +W+
Sbjct: 318 QYEEEVKANPHNYDAWFDYLRLVESDADADTVREVYERAIANIPPIQEKRHWRRYIYLWI 377
Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA----LLGLYERTEQN-KLADELLY 1659
Y E PE +V++ L+ KK A L G +E ++N + A L
Sbjct: 378 NYALYEELEVKDPERTR-QVYKACLELIPHKKFTFAKIWLLYGQFEIRQKNLQNARRGLG 436
Query: 1660 KMIKKFKHSCKVWXXXXXXXXXXXXEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKN 1717
I K + + + + ++ L P + IKF IL
Sbjct: 437 TAIGKCPKNKLFKGYIELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETIL---- 492
Query: 1718 GVADRGRSMFEGILSEYPKRTD----LWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXX 1773
G DR R++FE + + P R D LW Y+D EI + D RGL++R +
Sbjct: 493 GDTDRSRAIFELAIGQ-P-RLDMPEVLWKSYIDFEIEQEEYDNTRGLYKRLLQRTQHVKV 550
Query: 1774 XXXXXXXYLEYEKSVGEEERIEYVKQ 1799
Y ++E S+ E+R++ +Q
Sbjct: 551 WIS----YAQFELSIDTEDRVQRCRQ 572
>UNIPROTKB|P46837 [details] [associations]
symbol:yhgF "predicted transcriptional accessory protein"
species:83333 "Escherichia coli K-12" [GO:0016788 "hydrolase
activity, acting on ester bonds" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006139 EMBL:U18997 GO:GO:0003723
GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 PIR:B65136 RefSeq:NP_417866.4
RefSeq:YP_492025.1 ProteinModelPortal:P46837 SMR:P46837
DIP:DIP-12337N IntAct:P46837 MINT:MINT-1288997 PRIDE:P46837
EnsemblBacteria:EBESCT00000002880 EnsemblBacteria:EBESCT00000016404
GeneID:12932731 GeneID:947911 KEGG:ecj:Y75_p3769 KEGG:eco:b3407
PATRIC:32122250 EchoBASE:EB2768 EcoGene:EG12932
HOGENOM:HOG000270497 KO:K06959 ProtClustDB:CLSK862831
BioCyc:EcoCyc:G7746-MONOMER BioCyc:ECOL316407:JW3370-MONOMER
Genevestigator:P46837 Uniprot:P46837
Length = 773
Score = 145 (56.1 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 31/88 (35%), Positives = 57/88 (64%)
Query: 1328 RTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
+TA ++ + +++L G I+ G + V ++G F+ I + GL H+S LS V++
Sbjct: 634 KTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDI-GVHQDGLVHISSLSNKFVEDPH 692
Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMK 1414
T+ +AG+ VKVK+L+VD +++RI+L M+
Sbjct: 693 TVVKAGDIVKVKVLEVDLQRKRIALTMR 720
Score = 135 (52.6 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
+E + DL P MI++G V NVT+ G F+ + D V +S+LS+ +VE P G +V
Sbjct: 642 VETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIV 701
Query: 1305 AGRVLSVEPLSKRVEVTLKTSD 1326
+VL V+ KR+ +T++ +
Sbjct: 702 KVKVLEVDLQRKRIALTMRLDE 723
Score = 53 (23.7 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 18/89 (20%), Positives = 36/89 (40%)
Query: 711 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 770
+ T A+ ++L E+ A + + W ++ +V+ GK E F F+
Sbjct: 153 ADTKAALDGARYILMERFAEDAALLAKVRDYLWKNAHLVSTVVSGKEEEGAKFRDY--FD 210
Query: 771 EHSDVYGFITHHQLAGATVESGSVIQAAI 799
H + +H LA + V+Q ++
Sbjct: 211 HHEPLSTVPSHRALAMFRGRNEGVLQLSL 239
Score = 38 (18.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 795 IQAAILDVAKAERLVDLSLKTVFIDRFRE 823
IQA V A RL+D FI R+R+
Sbjct: 14 IQARPEQVDAAVRLLDEGNTVPFIARYRK 42
Score = 37 (18.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 616 AKYSLINSAQQLPSDASHIHPNS 638
A + IN P DAS +HP +
Sbjct: 551 AGFLRINHGDN-PLDASTVHPEA 572
>UNIPROTKB|Q60A39 [details] [associations]
symbol:MCA1032 "S1 RNA binding domain protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
GO:GO:0006139 GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AE017282
GenomeReviews:AE017282_GR InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:YP_113508.1
ProteinModelPortal:Q60A39 SMR:Q60A39 GeneID:3102226
KEGG:mca:MCA1032 PATRIC:22605872 Uniprot:Q60A39
Length = 735
Score = 130 (50.8 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 31/97 (31%), Positives = 56/97 (57%)
Query: 1328 RTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
+TA E + +L G + G + V ++G F+ + + GL H+S L++ V +
Sbjct: 601 KTARFKEGVTEPKDLEPGMRLEGVVTNVTNFGAFVDV-GVHQDGLVHISHLADRFVRDPR 659
Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
+ +AG+ V+VK+L+VD +RRI+L M+S K +A+
Sbjct: 660 EVVKAGDVVQVKVLEVDIPRRRIALSMRSDAAKGEAE 696
Score = 114 (45.2 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
+DL P M ++G V NVT+ G F+ + D V +S+L+D +V P + G +V +V
Sbjct: 613 KDLEPGMRLEGVVTNVTNFGAFVDVGVHQDGLVHISHLADRFVRDPREVVKAGDVVQVKV 672
Query: 1309 LSVEPLSKRVEVTLKTSDS 1327
L V+ +R+ ++++ SD+
Sbjct: 673 LEVDIPRRRIALSMR-SDA 690
Score = 67 (28.6 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 740 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAI 799
E W EG ++ S+++GK F +EE + G +H LA + V+ + +
Sbjct: 149 EKVWSEGLLVSSLVDGKAEGGAKFKDYFDYEEA--LAGIPSHRALALLRGRNEGVL-SLV 205
Query: 800 LDVAKAE 806
L VAK E
Sbjct: 206 LRVAKDE 212
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 144 (55.7 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 64/266 (24%), Positives = 112/266 (42%)
Query: 1549 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN-IREEN---EKLNIWV 1604
++E V+++P++ W Y+ + S AD E R + ERA+ + I+E+ + +W+
Sbjct: 335 QYEEEVKANPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQEKRYWKRYIYLWI 394
Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL----YERTEQN-KLADELLY 1659
Y E PE +V+Q ++ KK A + L +E ++N LA L
Sbjct: 395 NYALYEELEAKDPERTR-QVYQACIELLPHKKFTFAKIWLLYAQFEIRQKNLPLARRALG 453
Query: 1660 KMIKKFKHSCKVWXXXXXXXXXXXXEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKN 1717
I K + + + + ++ L P + IKF IL
Sbjct: 454 TSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFAPENCTSWIKFAELETIL---- 509
Query: 1718 GVADRGRSMFEGILSEYPKRTD----LWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXX 1773
G DR R+++E +S+ P R D LW Y+D EI + + R L+ R +
Sbjct: 510 GDIDRARAIYELAISQ-P-RLDMPEVLWKSYIDFEIEQEEYEKTRNLYRRLLQRTQHVKV 567
Query: 1774 XXXXXXXYLEYEKSVGEEERIEYVKQ 1799
+ ++E S G+EE + +Q
Sbjct: 568 WIS----FAQFELSAGKEESLSKCRQ 589
>UNIPROTKB|Q81VX9 [details] [associations]
symbol:BAS0060 "S1 RNA binding domain protein" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 118 (46.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 22/77 (28%), Positives = 50/77 (64%)
Query: 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1399
++ VG + G++ + ++G F+ + L GL H+SE+++++V +I + G++V+VK+
Sbjct: 2 SIEVGSKLQGKVTGITNFGAFVELPE-GLTGLVHISEVADNYVKDINDHLKVGDQVEVKV 60
Query: 1400 LKVDKEKRRISLGMKSS 1416
+ V+K+ + I L +K +
Sbjct: 61 INVEKDGK-IGLSIKKA 76
>TIGR_CMR|BA_0060 [details] [associations]
symbol:BA_0060 "S1 RNA binding domain protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 118 (46.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 22/77 (28%), Positives = 50/77 (64%)
Query: 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1399
++ VG + G++ + ++G F+ + L GL H+SE+++++V +I + G++V+VK+
Sbjct: 2 SIEVGSKLQGKVTGITNFGAFVELPE-GLTGLVHISEVADNYVKDINDHLKVGDQVEVKV 60
Query: 1400 LKVDKEKRRISLGMKSS 1416
+ V+K+ + I L +K +
Sbjct: 61 INVEKDGK-IGLSIKKA 76
>TIGR_CMR|BA_3944 [details] [associations]
symbol:BA_3944 "polyribonucleotide nucleotidyltransferase"
species:198094 "Bacillus anthracis str. Ames" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:NP_846188.1 RefSeq:YP_020583.1
RefSeq:YP_029909.1 ProteinModelPortal:Q81WM8 IntAct:Q81WM8
DNASU:1086877 EnsemblBacteria:EBBACT00000009810
EnsemblBacteria:EBBACT00000017999 EnsemblBacteria:EBBACT00000024497
GeneID:1086877 GeneID:2814451 GeneID:2852317 KEGG:ban:BA_3944
KEGG:bar:GBAA_3944 KEGG:bat:BAS3658
BioCyc:BANT260799:GJAJ-3716-MONOMER
BioCyc:BANT261594:GJ7F-3832-MONOMER Uniprot:Q81WM8
Length = 712
Score = 135 (52.6 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 26/74 (35%), Positives = 49/74 (66%)
Query: 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
+ VG+I G++KRVE +G F+ + + GL H+SEL+ + V +E + + G+ + VK++
Sbjct: 620 VQVGEIYEGKVKRVEKFGAFVELFSGK-DGLVHISELALERVGKVEDVVKIGDVITVKVI 678
Query: 1401 KVDKEKRRISLGMK 1414
++DK+ R ++L K
Sbjct: 679 EIDKQGR-VNLSRK 691
Score = 57 (25.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 24/88 (27%), Positives = 41/88 (46%)
Query: 737 NGSEL-KWVEGFIIGSVIEGKVHESNDF-GVVVSFEEHSDVYGFITHHQLAGATVESGSV 794
NG+ L ++ + ++ + K ++ DF + V++EE G I G G
Sbjct: 29 NGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP----GGFIKREGRP 84
Query: 795 IQAAILDVAKAERLVDLSLKTVFIDRFR 822
+ AIL A RL+D ++ +F D FR
Sbjct: 85 SEKAIL----ASRLIDRPIRPLFADGFR 108
>UNIPROTKB|Q0BZL2 [details] [associations]
symbol:HNE_2386 "S1 RNA binding domain protein"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:CP000158 GenomeReviews:CP000158_GR
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_761081.1 ProteinModelPortal:Q0BZL2 SMR:Q0BZL2
STRING:Q0BZL2 GeneID:4287336 KEGG:hne:HNE_2386 PATRIC:32217623
ProtClustDB:CLSK2531628 BioCyc:HNEP228405:GI69-2408-MONOMER
Uniprot:Q0BZL2
Length = 771
Score = 132 (51.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
++K+ DL P M ++G V NVT+ G F+ + D V +S +SD +++ P G++V
Sbjct: 651 IDKVTDLKPGMRLEGVVTNVTAFGAFVDIGVHQDGLVHISEMSDTFIKDPHDAVKTGQVV 710
Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSR 1328
+ V+ V+ KR+ +++K R
Sbjct: 711 SVTVMEVDVARKRIGLSMKQGGKR 734
Score = 59 (25.8 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 714 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 773
DA+ +L E+IA E W EG + S+++GK E F F+E
Sbjct: 166 DAALEGARDILVERIAETPRLVGKVRETVWKEGKLGSSLVKGKEQEGAKFSDYFDFDE-- 223
Query: 774 DVYGFITHHQLA 785
V +H LA
Sbjct: 224 PVTQMPSHRALA 235
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 138 (53.6 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 57/257 (22%), Positives = 107/257 (41%)
Query: 1566 KYMAFMLSMADVEKARS--IAERALQTIN-IREENEKLNIWVAYFNLENEYGNPPEEAVV 1622
K++AF D E + +R Q + +R+ + W Y LE GN ++ +
Sbjct: 304 KFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEESVGN--KDRIR 361
Query: 1623 KVFQRALQYCDPKK--------VHLAL-LGLYER--TEQNKLADELLYKMIKKFKHS--- 1668
++++RA+ P + ++L + L+E TE + ++ + +K HS
Sbjct: 362 EIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTRDVYRECLKLIPHSKFS 421
Query: 1669 -CKVWXXXXXXXXXXXX-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
K+W G + ++ A+ P+ K K + +E + G DR R +
Sbjct: 422 FAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDKIFKKYIE---IELQLGNMDRCRKL 478
Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXXXXXXXXXYLEYEK 1786
+E L P+ WS Y + E L + + R +FE AI Y+++E
Sbjct: 479 YERYLEWSPENCYAWSKYAELERSLVETERARAIFELAISQPALDMPELLWKA-YIDFEI 537
Query: 1787 SVGEEERIEYVKQKAME 1803
S GE ER + ++ ++
Sbjct: 538 SEGELERTRALYERLLD 554
>UNIPROTKB|P50849 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 GO:GO:0030420 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 EMBL:U29668 EMBL:Z80835 PIR:S70691
RefSeq:NP_389551.1 ProteinModelPortal:P50849 SMR:P50849
IntAct:P50849 EnsemblBacteria:EBBACT00000003076 GeneID:939646
KEGG:bsu:BSU16690 PATRIC:18975145 GenoList:BSU16690
BioCyc:BSUB:BSU16690-MONOMER Uniprot:P50849
Length = 705
Score = 137 (53.3 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 25/75 (33%), Positives = 50/75 (66%)
Query: 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
+ VG + +G++KR+E +G F+ I + GL H+SEL+ + V +E + + G+++ VK+
Sbjct: 620 VEVGQLYLGKVKRIEKFGAFVEIFSGK-DGLVHISELALERVGKVEDVVKIGDEILVKVT 678
Query: 1401 KVDKEKRRISLGMKS 1415
++DK+ R ++L K+
Sbjct: 679 EIDKQGR-VNLSRKA 692
Score = 52 (23.4 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 737 NGSEL-KWVEGFIIGSVIEGKVHESNDF-GVVVSFEEHSDVYGFITHHQLAGATVESGSV 794
NG+ + ++ + ++ + K + DF + V++EE G I G G
Sbjct: 29 NGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP----GGFIKREGRP 84
Query: 795 IQAAILDVAKAERLVDLSLKTVFIDRFR 822
+ A+L A RL+D ++ +F D FR
Sbjct: 85 SEKAVL----ASRLIDRPIRPLFADGFR 108
Score = 43 (20.2 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 22/72 (30%), Positives = 29/72 (40%)
Query: 440 HKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAP-RSELGLDP 497
H + +K ILS + RLIT K+ G GV P SE+GL P
Sbjct: 286 HDEDTIKQVKQILSKLVKNEVRRLITE---EKVRPDG------RGVDQIRPLSSEVGLLP 336
Query: 498 GCEPSSMYHVGQ 509
S ++ GQ
Sbjct: 337 RTHGSGLFTRGQ 348
>WB|WBGene00003393 [details] [associations]
symbol:mog-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
Length = 1200
Score = 131 (51.2 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 1343 VGDIVIGQIKRVESYGLFITIEN--TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
+G I G++ ++S+G FIT+E GL H+S++ + V + + + GE VKVK+
Sbjct: 233 IGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIRNERVQTVADVLKRGENVKVKVN 292
Query: 1401 KVDKEKRRISLGMKSSYFKNDADNL 1425
K++ K ISL MK +N ++L
Sbjct: 293 KIENGK--ISLSMKE-VDQNSGEDL 314
Score = 65 (27.9 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 1574 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1633
MA+ S+++ + ++++ E L I VA N++N + P E+ Q+ ++
Sbjct: 955 MAEFPLEPSLSKLLIMSVDLGCSEEVLTI-VAMLNVQNIFYRPKEKQD-HADQKKAKFHQ 1012
Query: 1634 PKKVHLALLGLY 1645
P+ HL LL +Y
Sbjct: 1013 PEGDHLTLLAVY 1024
Score = 47 (21.6 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 1458 DM-DMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTI 1511
DM D + E G VL + + +E+ L +++PD G + + K +
Sbjct: 386 DMPDFDEEMG---VLRNYDDESDGEDIEIELVEDEPDFLRGYGKGGAEIEPVKVV 437
Score = 43 (20.2 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 1471 LAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKT 1510
L+ +E R S+P + + + +DN I G T KT
Sbjct: 531 LSMVEQRESLPIFALKKNLMEAMIDNQILVVVGETGSGKT 570
>UNIPROTKB|Q09530 [details] [associations]
symbol:mog-5 "Probable pre-mRNA-splicing factor
ATP-dependent RNA helicase mog-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
Length = 1200
Score = 131 (51.2 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 1343 VGDIVIGQIKRVESYGLFITIEN--TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
+G I G++ ++S+G FIT+E GL H+S++ + V + + + GE VKVK+
Sbjct: 233 IGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIRNERVQTVADVLKRGENVKVKVN 292
Query: 1401 KVDKEKRRISLGMKSSYFKNDADNL 1425
K++ K ISL MK +N ++L
Sbjct: 293 KIENGK--ISLSMKE-VDQNSGEDL 314
Score = 65 (27.9 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 1574 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1633
MA+ S+++ + ++++ E L I VA N++N + P E+ Q+ ++
Sbjct: 955 MAEFPLEPSLSKLLIMSVDLGCSEEVLTI-VAMLNVQNIFYRPKEKQD-HADQKKAKFHQ 1012
Query: 1634 PKKVHLALLGLY 1645
P+ HL LL +Y
Sbjct: 1013 PEGDHLTLLAVY 1024
Score = 47 (21.6 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 1458 DM-DMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTI 1511
DM D + E G VL + + +E+ L +++PD G + + K +
Sbjct: 386 DMPDFDEEMG---VLRNYDDESDGEDIEIELVEDEPDFLRGYGKGGAEIEPVKVV 437
Score = 43 (20.2 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 1471 LAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKT 1510
L+ +E R S+P + + + +DN I G T KT
Sbjct: 531 LSMVEQRESLPIFALKKNLMEAMIDNQILVVVGETGSGKT 570
>UNIPROTKB|Q724J5 [details] [associations]
symbol:LMOf2365_0229 "RNA-binding protein" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0003723 EMBL:AE017262
GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG1098
HOGENOM:HOG000217052 RefSeq:YP_012839.1 ProteinModelPortal:Q724J5
STRING:Q724J5 GeneID:2797347 KEGG:lmf:LMOf2365_0229 PATRIC:20321637
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 Uniprot:Q724J5
Length = 142
Score = 110 (43.8 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 21/82 (25%), Positives = 50/82 (60%)
Query: 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1399
++ VG+ + G++ + ++G F+ +E GL H+SE+++++V +I I G++V VK+
Sbjct: 2 SIEVGNKLQGKVTGITNFGAFVELEGGK-TGLVHISEVADNYVKDINDILTVGDEVTVKV 60
Query: 1400 LKVDKEKRRISLGMKSSYFKND 1421
+ + + + I L ++ + + D
Sbjct: 61 MNIGDDGK-IGLSIRKAVDRPD 81
>UNIPROTKB|Q9KNL6 [details] [associations]
symbol:VC_2716 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006281 GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 KO:K06959 PIR:E82042 RefSeq:NP_232343.1
ProteinModelPortal:Q9KNL6 SMR:Q9KNL6 DNASU:2615544 GeneID:2615544
KEGG:vch:VC2716 PATRIC:20084450 ProtClustDB:CLSK2298315
Uniprot:Q9KNL6
Length = 773
Score = 146 (56.5 bits), Expect = 8.1e-05, Sum P(3) = 8.1e-05
Identities = 30/88 (34%), Positives = 59/88 (67%)
Query: 1328 RTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
+TA+ +E I+ +S+L VG ++ G + V ++G F+ I + GL H+S L++ + +
Sbjct: 634 KTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDI-GVHQDGLVHISALTDRFISDPR 692
Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ +AG+ VKVK+++VD +++RI+L M+
Sbjct: 693 EVVKAGDIVKVKVMEVDVQRKRIALSMR 720
Score = 45 (20.9 bits), Expect = 8.1e-05, Sum P(3) = 8.1e-05
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 489 PRSELGLDPG 498
PR+ LGLDPG
Sbjct: 325 PRATLGLDPG 334
Score = 43 (20.2 bits), Expect = 8.1e-05, Sum P(3) = 8.1e-05
Identities = 20/107 (18%), Positives = 40/107 (37%)
Query: 597 YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
Y +L + + ++ L S+ Q ++ I P S+ G + + +
Sbjct: 423 YSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKR 482
Query: 657 LGRLTGFAPRSKAVDGQRAD---LSKTYYVGQSVRSNILDVNSETGR 700
L + + VD A L++ + ++ NI+D E GR
Sbjct: 483 LDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGR 529
>TIGR_CMR|VC_2716 [details] [associations]
symbol:VC_2716 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 KO:K06959 PIR:E82042
RefSeq:NP_232343.1 ProteinModelPortal:Q9KNL6 SMR:Q9KNL6
DNASU:2615544 GeneID:2615544 KEGG:vch:VC2716 PATRIC:20084450
ProtClustDB:CLSK2298315 Uniprot:Q9KNL6
Length = 773
Score = 146 (56.5 bits), Expect = 8.1e-05, Sum P(3) = 8.1e-05
Identities = 30/88 (34%), Positives = 59/88 (67%)
Query: 1328 RTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
+TA+ +E I+ +S+L VG ++ G + V ++G F+ I + GL H+S L++ + +
Sbjct: 634 KTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAFVDI-GVHQDGLVHISALTDRFISDPR 692
Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ +AG+ VKVK+++VD +++RI+L M+
Sbjct: 693 EVVKAGDIVKVKVMEVDVQRKRIALSMR 720
Score = 45 (20.9 bits), Expect = 8.1e-05, Sum P(3) = 8.1e-05
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 489 PRSELGLDPG 498
PR+ LGLDPG
Sbjct: 325 PRATLGLDPG 334
Score = 43 (20.2 bits), Expect = 8.1e-05, Sum P(3) = 8.1e-05
Identities = 20/107 (18%), Positives = 40/107 (37%)
Query: 597 YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
Y +L + + ++ L S+ Q ++ I P S+ G + + +
Sbjct: 423 YSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKR 482
Query: 657 LGRLTGFAPRSKAVDGQRAD---LSKTYYVGQSVRSNILDVNSETGR 700
L + + VD A L++ + ++ NI+D E GR
Sbjct: 483 LDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGR 529
>TAIR|locus:2119946 [details] [associations]
symbol:emb2726 "embryo defective 2726" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003746 "translation elongation factor activity"
evidence=IEA;ISS] [GO:0006414 "translational elongation"
evidence=IEA;ISS] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0042744
"hydrogen peroxide catabolic process" evidence=RCA] HAMAP:MF_00050
InterPro:IPR000449 InterPro:IPR001816 InterPro:IPR003029
InterPro:IPR009060 InterPro:IPR014039 InterPro:IPR018101
Pfam:PF00575 Pfam:PF00627 Pfam:PF00889 PROSITE:PS01126
PROSITE:PS01127 PROSITE:PS50126 GO:GO:0046686 GO:GO:0009570
EMBL:CP002687 EMBL:AL078470 EMBL:AL161574 GO:GO:0009941
GO:GO:0003746 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SUPFAM:SSF46934 InterPro:IPR022967 SMART:SM00316 KO:K02357
Gene3D:3.30.479.20 PANTHER:PTHR11741 SUPFAM:SSF54713
TIGRFAMs:TIGR00116 HSSP:P43895 EMBL:AY056792 IPI:IPI00541725
PIR:T08961 RefSeq:NP_567820.1 UniGene:At.21764
ProteinModelPortal:Q9SZD6 SMR:Q9SZD6 STRING:Q9SZD6 PRIDE:Q9SZD6
ProMEX:Q9SZD6 EnsemblPlants:AT4G29060.1 GeneID:829027
KEGG:ath:AT4G29060 TAIR:At4g29060 HOGENOM:HOG000244107
InParanoid:Q9SZD6 OMA:DDLAMQV PhylomeDB:Q9SZD6
Genevestigator:Q9SZD6 Uniprot:Q9SZD6
Length = 953
Score = 132 (51.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 34/108 (31%), Positives = 63/108 (58%)
Query: 1315 SKRVEVTLKTSDSR-TAS---QSEINNLSN--LHVGDIVIGQIKRVESYGLFITIENTNL 1368
S++ + TS SR TA +SE+ + N L G G+++ ++ +G F+
Sbjct: 101 SEKSDAPAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDF-GAFT 159
Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
GL HVS+LS++ V ++ ++ G++VKV++++ D E +RISL M+ +
Sbjct: 160 DGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADIESKRISLTMREN 207
Score = 103 (41.3 bits), Expect = 0.00074, Sum P(3) = 0.00074
Identities = 29/97 (29%), Positives = 46/97 (47%)
Query: 1241 PGKHLE----KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1296
PG+ E K E+L P G V+ + G F+ D V +S LSD +V+
Sbjct: 119 PGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSS 178
Query: 1297 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
IG+ V R++ + SKR+ +T++ +D QS
Sbjct: 179 VVTIGQEVKVRLVEADIESKRISLTMRENDDPPKRQS 215
Score = 73 (30.8 bits), Expect = 0.00074, Sum P(3) = 0.00074
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE---TIYRAGEKVKVKIL 1400
G ++ G +K + G FITI G +E ++D + ++ + +AG++VKV++L
Sbjct: 248 GQMLDGVVKNLTRSGAFITIGEGE-EGFLPTAEEADDGIGSMMMGGSSLQAGQEVKVRVL 306
Query: 1401 KVDKEKRRISLGMK 1414
++ + R++L MK
Sbjct: 307 RI--ARGRVTLTMK 318
Score = 53 (23.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 1448 LLENSSVAV--QDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHT 1505
++E +A +D E E+ + A E+ VPP+ +E+ ++N I N T
Sbjct: 407 VVEEEVIATKAEDDSPEKEEQTETLAAAAEAEEVVPPIPETKSEEEI-VENSIPPNSA-T 464
Query: 1506 DEAKT 1510
DE +
Sbjct: 465 DEVSS 469
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 131 (51.2 bits), Expect = 0.00028, P = 0.00028
Identities = 64/266 (24%), Positives = 112/266 (42%)
Query: 1549 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN-IREENE-K--LNIWV 1604
++E V+++P++ W Y+ + S A+ E R + ERA+ + I+E+ K + +W+
Sbjct: 467 QYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWI 526
Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA----LLGLYERTEQN-KLADELLY 1659
Y E PE +V+Q +L+ KK A L +E ++N LA L
Sbjct: 527 NYALYEELEAKDPERTR-QVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALG 585
Query: 1660 KMIKKFKHSCKVWXXXXXXXXXXXXEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKN 1717
I K + + + + ++ L P + IKF IL
Sbjct: 586 TSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETIL---- 641
Query: 1718 GVADRGRSMFEGILSEYPKRTD----LWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXX 1773
G DR R+++E +S+ P R D LW Y+D EI + + R L+ R +
Sbjct: 642 GDIDRARAIYELAISQ-P-RLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKV 699
Query: 1774 XXXXXXXYLEYEKSVGEEERIEYVKQ 1799
+ ++E S G+E + +Q
Sbjct: 700 WIS----FAQFELSSGKEGSLTKCRQ 721
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 131 (51.2 bits), Expect = 0.00028, P = 0.00028
Identities = 64/266 (24%), Positives = 112/266 (42%)
Query: 1549 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN-IREENE-K--LNIWV 1604
++E V+++P++ W Y+ + S A+ E R + ERA+ + I+E+ K + +W+
Sbjct: 479 QYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWI 538
Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA----LLGLYERTEQN-KLADELLY 1659
Y E PE +V+Q +L+ KK A L +E ++N LA L
Sbjct: 539 NYALYEELEAKDPERTR-QVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALG 597
Query: 1660 KMIKKFKHSCKVWXXXXXXXXXXXXEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKN 1717
I K + + + + ++ L P + IKF IL
Sbjct: 598 TSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETIL---- 653
Query: 1718 GVADRGRSMFEGILSEYPKRTD----LWSIYLDQEIRLGDVDLIRGLFERAIXXXXXXXX 1773
G DR R+++E +S+ P R D LW Y+D EI + + R L+ R +
Sbjct: 654 GDIDRARAIYELAISQ-P-RLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKV 711
Query: 1774 XXXXXXXYLEYEKSVGEEERIEYVKQ 1799
+ ++E S G+E + +Q
Sbjct: 712 WIS----FAQFELSSGKEGSLTKCRQ 733
>TIGR_CMR|CBU_0852 [details] [associations]
symbol:CBU_0852 "polyribonucleotide
nucleotidyltransferase" species:227377 "Coxiella burnetii RSA 493"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_819872.1
ProteinModelPortal:Q83D87 SMR:Q83D87 PRIDE:Q83D87 GeneID:1208745
KEGG:cbu:CBU_0852 PATRIC:17930401
BioCyc:CBUR227377:GJ7S-847-MONOMER Uniprot:Q83D87
Length = 696
Score = 134 (52.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 24/98 (24%), Positives = 58/98 (59%)
Query: 1318 VEVTLKTSDSRTASQSEINNLS-NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
+++ T++ A++ I L+ + +G + G + ++ +G F+ I N GL H+S+
Sbjct: 598 IKIAAHTTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQIL-PNTQGLVHISQ 656
Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
++++ V+N+ G+ ++VK++++D++ R + L MK
Sbjct: 657 IAQERVENVRDYLEEGQVIRVKVIEIDRQGR-VRLSMK 693
Score = 47 (21.6 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 990 QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1022
+T+T+R+I + +P K F E+ + ++L+V
Sbjct: 87 ETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSV 119
Score = 42 (19.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 885 FPQKQFLNGQSVIATVMALPS 905
FP K F N VIATV+++ S
Sbjct: 102 FP-KGFTNEVQVIATVLSVDS 121
>TIGR_CMR|CPS_2207 [details] [associations]
symbol:CPS_2207 "polyribonucleotide
nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
Length = 705
Score = 142 (55.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 32/119 (26%), Positives = 66/119 (55%)
Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS-NLHVGDIVIGQIKRVESYGLFITIE 1364
G + +E V++ + + + + I L+ + VG + G++ R+ +G F+ +
Sbjct: 584 GTTIEIED-DGTVKIAATSGEQAEDAINRIKALTAEIEVGTLYTGKVVRIVDFGAFVNVL 642
Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
GL H+S++SE+ V+N+ + G++VKVK+L+VD++ R + L +K + K A+
Sbjct: 643 -PGKDGLVHISQISEERVNNVSEVLTEGQEVKVKVLEVDRQGR-VRLSIKEAMEKPAAE 699
Score = 38 (18.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 10/42 (23%), Positives = 25/42 (59%)
Query: 990 QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS-EIGSKLL 1030
+T+ AR+I + +P + F E+ + ++++V+ EI ++
Sbjct: 88 ETLIARLIDRPIRPLFPEGFTNEVQVIITVVSVNPEIAPDII 129
>UNIPROTKB|Q3IJ73 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
KEGG:pha:PSHAa1001 PATRIC:32295529
BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
Length = 708
Score = 135 (52.6 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 36/109 (33%), Positives = 63/109 (57%)
Query: 1320 VTLKTSDSRTASQ--SEINNLS-NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
+ + +D +A+ S I L+ L VG I G++ R+ +G F+ I GL H+S+
Sbjct: 597 IKIAATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNIL-PGKDGLVHISQ 655
Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKR-RISL--GMKSSYFKNDA 1422
+S + V+N+ G++VKVK+L+VD++ R R+S+ M+S+ DA
Sbjct: 656 ISTERVNNVTDHLSEGQEVKVKVLEVDRQGRVRLSIKEAMESAAPAADA 704
Score = 45 (20.9 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 989 GQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1023
G+T+ AR+I + +P F+ E+ + ++++V+
Sbjct: 86 GETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVN 120
>UNIPROTKB|Q9KU76 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR009019 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 131 (51.2 bits), Expect = 0.00082, Sum P(3) = 0.00082
Identities = 30/118 (25%), Positives = 62/118 (52%)
Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS-NLHVGDIVIGQIKRVESYGLFITIE 1364
G + +E +++ D + I ++ + VG I G++ R+ +G F+TI
Sbjct: 585 GTTIEIED-DGTIKIAATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTIL 643
Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
GL H+S++++ V+ + G++V+VK+L++D++ R + L MK + +DA
Sbjct: 644 -PGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEIDRQGR-VRLSMKEAVETSDA 699
Score = 50 (22.7 bits), Expect = 0.00082, Sum P(3) = 0.00082
Identities = 25/118 (21%), Positives = 51/118 (43%)
Query: 989 GQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK 1048
G+T+ AR+I + +P F E+ + ++++V+ + S ++G +
Sbjct: 88 GETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDIISMIGTSAALAISGLPF- 146
Query: 1049 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH-VLSINKEKKLL 1105
+ + H+ QL + PSE + Q R + A T + VL + E ++L
Sbjct: 147 -NGPIGAARVG-HIDGQLVL-----NPSEKELKQSRLDLVVAGTDNAVLMVESEAQIL 197
Score = 42 (19.8 bits), Expect = 0.00082, Sum P(3) = 0.00082
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 347 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK---VIAVDSFGAIVQFPGGVKALCPL 403
H L TG++ A ++ T D + V GK V+ D F V + A +
Sbjct: 15 HTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKI 74
Query: 404 P 404
P
Sbjct: 75 P 75
>TIGR_CMR|VC_0647 [details] [associations]
symbol:VC_0647 "polyribonucleotide nucleotidyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 131 (51.2 bits), Expect = 0.00082, Sum P(3) = 0.00082
Identities = 30/118 (25%), Positives = 62/118 (52%)
Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS-NLHVGDIVIGQIKRVESYGLFITIE 1364
G + +E +++ D + I ++ + VG I G++ R+ +G F+TI
Sbjct: 585 GTTIEIED-DGTIKIAATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTIL 643
Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
GL H+S++++ V+ + G++V+VK+L++D++ R + L MK + +DA
Sbjct: 644 -PGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEIDRQGR-VRLSMKEAVETSDA 699
Score = 50 (22.7 bits), Expect = 0.00082, Sum P(3) = 0.00082
Identities = 25/118 (21%), Positives = 51/118 (43%)
Query: 989 GQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK 1048
G+T+ AR+I + +P F E+ + ++++V+ + S ++G +
Sbjct: 88 GETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDIISMIGTSAALAISGLPF- 146
Query: 1049 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH-VLSINKEKKLL 1105
+ + H+ QL + PSE + Q R + A T + VL + E ++L
Sbjct: 147 -NGPIGAARVG-HIDGQLVL-----NPSEKELKQSRLDLVVAGTDNAVLMVESEAQIL 197
Score = 42 (19.8 bits), Expect = 0.00082, Sum P(3) = 0.00082
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 347 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK---VIAVDSFGAIVQFPGGVKALCPL 403
H L TG++ A ++ T D + V GK V+ D F V + A +
Sbjct: 15 HTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLTVNYQERTYAAGKI 74
Query: 404 P 404
P
Sbjct: 75 P 75
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 122 (48.0 bits), Expect = 0.00095, P = 0.00095
Identities = 55/230 (23%), Positives = 97/230 (42%)
Query: 1550 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1609
++R V+ P W KY+ + +++ AR I ER + + + W+ +
Sbjct: 129 WDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWM------DWSPDQQAWLCFIKF 182
Query: 1610 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE-RTEQNKLAD---ELLYKMIKKF 1665
E Y N E + +++R + C PK +E + Q LA E +M+K
Sbjct: 183 ELRY-NEIERSR-SIYERFV-LCHPKASSFIRYAKFEMKNSQVSLARIVYERAIEMLKDV 239
Query: 1666 KHSCKVWXXXXXXXXXXXXEGVQA--VVQRALLSLPRHK----HIKFISQTAILEFKNGV 1719
+ ++ E +A + + AL +P+ + + KF++ K G+
Sbjct: 240 EEEAEMIFVAFAEFEELCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNKEGI 299
Query: 1720 AD----RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765
D R + +EG + + P D W Y+ E LGD D IR ++ERAI
Sbjct: 300 DDAIVGRRKLQYEGEVRKNPLNYDSWFDYISLEETLGDKDRIREVYERAI 349
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1810 1637 0.00084 125 3 11 22 0.41 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 63
No. of states in DFA: 625 (66 KB)
Total size of DFA: 604 KB (2269 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 133.13u 0.11s 133.24t Elapsed: 00:00:09
Total cpu time: 133.19u 0.11s 133.30t Elapsed: 00:00:09
Start: Tue May 21 01:30:22 2013 End: Tue May 21 01:30:31 2013