BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000236
         (1810 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359481849|ref|XP_002276633.2| PREDICTED: protein RRP5 homolog [Vitis vinifera]
          Length = 1879

 Score = 2622 bits (6795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1323/1821 (72%), Positives = 1528/1821 (83%), Gaps = 81/1821 (4%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            +NIS GMKLWGVVAEVNEKDL I LPGGLRGL RA++A DP+  NEI+  E   LP IFH
Sbjct: 126  KNISPGMKLWGVVAEVNEKDLGISLPGGLRGLVRASEAFDPLFSNEIKDAEGIFLPRIFH 185

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            +GQLVSC+VLQLDDDKKE GKR+IWLSLRLSLL+KG +L+ +QEGMVLTAYVKSIEDHGY
Sbjct: 186  IGQLVSCVVLQLDDDKKEKGKRRIWLSLRLSLLHKGFTLDALQEGMVLTAYVKSIEDHGY 245

Query: 124  ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 183
            ILHFGLPSFTGFLP+++ A+ + I++  G +LQGV+RSID+  KVVYLSSDPDT+SKCVT
Sbjct: 246  ILHFGLPSFTGFLPKSSQADQN-IEINTGQILQGVIRSIDKAHKVVYLSSDPDTISKCVT 304

Query: 184  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 243
            KDLKGISIDLL+PGMMV+ RVQS  ENGVMLSFLTYFTGTVDIFHLQ TFP++NWK+DYN
Sbjct: 305  KDLKGISIDLLIPGMMVNARVQSTFENGVMLSFLTYFTGTVDIFHLQTTFPSSNWKDDYN 364

Query: 244  QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 303
            Q+KKVNARILF+DP++RAVGLTLNP+L++N+APP  VK GDIYD SKV+RVDRGLGLLL+
Sbjct: 365  QNKKVNARILFIDPSTRAVGLTLNPHLVNNKAPPCPVKTGDIYDHSKVIRVDRGLGLLLE 424

Query: 304  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
            +PSTP STP YVT               YKEGS VRVRILGFR+LEGLA G LKASAFEG
Sbjct: 425  VPSTPASTPTYVT---------------YKEGSHVRVRILGFRNLEGLAMGTLKASAFEG 469

Query: 364  LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
             VFTHSDVKPGMVVK KVIAVDSFGAIVQFP GVKALCPL HMSEF+IVKP KKFKVGAE
Sbjct: 470  SVFTHSDVKPGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAE 529

Query: 424  LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
            L+FRVLG KSKRITVTHKKTL+KSKL I+SSY +AT+ LITHGWITKIEKHGCF+RFYNG
Sbjct: 530  LIFRVLGCKSKRITVTHKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNG 589

Query: 484  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
            VQGFAP SELGL+PGC  S MYHVGQVVKCR+  S+PASRRINL           +D+VK
Sbjct: 590  VQGFAPSSELGLEPGCNTSLMYHVGQVVKCRVKGSVPASRRINL-----------NDMVK 638

Query: 544  LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
            LGS+V GVVD VTP+A++V V AKGY KGTI TEHLADH  HA +MKS +KPGYEFDQLL
Sbjct: 639  LGSVVGGVVDRVTPHAIIVNVSAKGYLKGTISTEHLADHQGHAALMKSTLKPGYEFDQLL 698

Query: 604  VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            VLD E +N +LSAKYSLINSAQQLP D + IHPNSVVHGY+CNIIETGCFVRFLGRLTGF
Sbjct: 699  VLDVEGNNFILSAKYSLINSAQQLPLDLTQIHPNSVVHGYICNIIETGCFVRFLGRLTGF 758

Query: 664  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 723
            +PR+K +D QRA  S+ +++GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF+QE+FL
Sbjct: 759  SPRNKVMDDQRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFL 818

Query: 724  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 783
            LEEKIA LQ S    SELKW EGF IG+VIEGK+H++ DFGVV+SFE+++DV+GFITH+Q
Sbjct: 819  LEEKIAKLQLSDSEHSELKWAEGFNIGTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQ 878

Query: 784  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 843
            L   T E GS +QA +LDVAK ERLVDLSLK  F+DR +E +SN QA KKKR+REA K+L
Sbjct: 879  L---TAERGSTVQAVVLDVAKTERLVDLSLKPEFLDRHKEDSSNSQAGKKKRRREAYKEL 935

Query: 844  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 903
              HQTVNAIVEIVKENYLVLSLPEYN++IGYASVSDYNTQKF QKQFL+GQSVIA+VMAL
Sbjct: 936  QPHQTVNAIVEIVKENYLVLSLPEYNYAIGYASVSDYNTQKFAQKQFLHGQSVIASVMAL 995

Query: 904  PSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 962
            PS ST GRLLL+LK++SE TETSSSKRAKKKSSY+VGSLVQAEITEIKPLELRLKFGIGF
Sbjct: 996  PSPSTVGRLLLVLKSVSEATETSSSKRAKKKSSYNVGSLVQAEITEIKPLELRLKFGIGF 1055

Query: 963  HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLT 1021
            HGR+HITEV D+  NV+EN FSNF+IGQTV+ARI+AK+NK +   K+  WELSIKP MLT
Sbjct: 1056 HGRVHITEVCDE--NVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWELSIKPEMLT 1113

Query: 1022 VS-EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1080
             S E+ +KL+  E  +S GQRVTGYVYKV+NEW  LTISRH+KAQLF+LD++ EP+ELQE
Sbjct: 1114 GSIEVENKLVDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTSCEPNELQE 1173

Query: 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ--DGISD-KTVDISN-------DNMQT 1130
            FQ+RF +GKAV+G+VLS NKEKKLLR+VL  F   +G  D K ++I N       +N+  
Sbjct: 1174 FQKRFEVGKAVSGYVLSANKEKKLLRMVLHQFSVSNGTLDGKVLNIDNQHCNPPIENLIP 1233

Query: 1131 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
             IH+GD +GGRISKIL GVGGL+VQIGPHLYG+VHFTELK+  VSDPLSGY E       
Sbjct: 1234 HIHKGDTLGGRISKILPGVGGLLVQIGPHLYGKVHFTELKDSWVSDPLSGYHE------- 1286

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
                GQFVKCKVLEI  + +GT HV+LSL SSL+GM S NS             +EKI++
Sbjct: 1287 ----GQFVKCKVLEIGHSEKGTVHVDLSLWSSLNGMHSPNS------------RVEKIDN 1330

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L  +M+VQGYVKNVTSKGCFI+LSRKLDA++LL+NLSDGYVE PE+EFPIGKLV+GRVLS
Sbjct: 1331 LHSDMLVQGYVKNVTSKGCFILLSRKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLS 1390

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
            VEPLS+RVEVTLKTS + +  +SE+N+ S++ VGDI+ G IKRVESYGLFITI++TN+VG
Sbjct: 1391 VEPLSRRVEVTLKTSSATSVQKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMVG 1450

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1430
            LCH+SELS+DH+ NIET Y+AGE+V  KILKVD+E+ RISLGMK+SY K    N      
Sbjct: 1451 LCHISELSDDHISNIETKYKAGERVAAKILKVDEERHRISLGMKNSYIKETTQNNGF--- 1507

Query: 1431 EESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD- 1489
                     V     S+ LEN+S  +Q++D+E ED    VL+Q+ESRAS+ PLEV+LDD 
Sbjct: 1508 ---------VDDTQLSTFLENNSREIQNLDVEYEDEEYPVLSQVESRASILPLEVDLDDV 1558

Query: 1490 EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDE 1549
               ++D+ + QN  +T+E  TIDEK+ R AKKK KEE+EQEIRAAEERL+  D PRT DE
Sbjct: 1559 NHSNLDDAVGQNHIYTNETNTIDEKSKRRAKKKAKEEKEQEIRAAEERLMLNDVPRTADE 1618

Query: 1550 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1609
            FE+LVR SPNSSF+WIKYMA MLS+AD+EKARSIAERAL+TINIREE+EKLNIW+AYFNL
Sbjct: 1619 FEKLVRGSPNSSFLWIKYMALMLSLADIEKARSIAERALRTINIREESEKLNIWMAYFNL 1678

Query: 1610 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1669
            ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG+YERTEQ+KLADELL KM KKFKHSC
Sbjct: 1679 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGMYERTEQHKLADELLEKMTKKFKHSC 1738

Query: 1670 KVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEG 1729
            KVWLRRVQ +LKQ Q+GVQ V+ RALL LPRHKHIKFISQTAILEFK+GV DRGRSMFEG
Sbjct: 1739 KVWLRRVQNVLKQHQDGVQPVINRALLCLPRHKHIKFISQTAILEFKSGVPDRGRSMFEG 1798

Query: 1730 ILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG 1789
            +L EYPKRTDLWS+YLDQEIRLGD+D+IR LFERAI+LSL P+KMKFLFKKYLEYEKS G
Sbjct: 1799 MLREYPKRTDLWSVYLDQEIRLGDIDIIRALFERAINLSLEPRKMKFLFKKYLEYEKSQG 1858

Query: 1790 EEERIEYVKQKAMEYVESTLA 1810
            +EERIE VK+KAMEY  STLA
Sbjct: 1859 DEERIESVKRKAMEYANSTLA 1879


>gi|297739784|emb|CBI29966.3| unnamed protein product [Vitis vinifera]
          Length = 1862

 Score = 2620 bits (6792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1318/1811 (72%), Positives = 1521/1811 (83%), Gaps = 78/1811 (4%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            +NIS GMKLWGVVAEVNEKDL I LPGGLRGL RA++A DP+  NEI+  E   LP IFH
Sbjct: 126  KNISPGMKLWGVVAEVNEKDLGISLPGGLRGLVRASEAFDPLFSNEIKDAEGIFLPRIFH 185

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            +GQLVSC+VLQLDDDKKE GKR+IWLSLRLSLL+KG +L+ +QEGMVLTAYVKSIEDHGY
Sbjct: 186  IGQLVSCVVLQLDDDKKEKGKRRIWLSLRLSLLHKGFTLDALQEGMVLTAYVKSIEDHGY 245

Query: 124  ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 183
            ILHFGLPSFTGFLP+++ AEN  I++  G +LQGV+RSID+  KVVYLSSDPDT+SKCVT
Sbjct: 246  ILHFGLPSFTGFLPKSSQAEN--IEINTGQILQGVIRSIDKAHKVVYLSSDPDTISKCVT 303

Query: 184  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 243
            KDLKGISIDLL+PGMMV+ RVQS  ENGVMLSFLTYFTGTVDIFHLQ TFP++NWK+DYN
Sbjct: 304  KDLKGISIDLLIPGMMVNARVQSTFENGVMLSFLTYFTGTVDIFHLQTTFPSSNWKDDYN 363

Query: 244  QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 303
            Q+KKVNARILF+DP++RAVGLTLNP+L++N+APP  VK GDIYD SKV+RVDRGLGLLL+
Sbjct: 364  QNKKVNARILFIDPSTRAVGLTLNPHLVNNKAPPCPVKTGDIYDHSKVIRVDRGLGLLLE 423

Query: 304  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
            +PSTP STP YVT+ DVA+EEVRK+EKKYKEGS VRVRILGFR+LEGLA G LKASAFEG
Sbjct: 424  VPSTPASTPTYVTLFDVADEEVRKMEKKYKEGSHVRVRILGFRNLEGLAMGTLKASAFEG 483

Query: 364  LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
             VFTHSDVKPGMVVK KVIAVDSFGAIVQFP GVKALCPL HMSEF+IVKP KKFKVGAE
Sbjct: 484  SVFTHSDVKPGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAE 543

Query: 424  LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
            L+FRVLG KSKRITVTHKKTL+KSKL I+SSY +AT+ LITHGWITKIEKHGCF+RFYNG
Sbjct: 544  LIFRVLGCKSKRITVTHKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNG 603

Query: 484  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
            VQGFAP SELGL+PGC  S MYHVGQVVKCR+  S+PASRRINLSF++KPTR+SEDD+VK
Sbjct: 604  VQGFAPSSELGLEPGCNTSLMYHVGQVVKCRVKGSVPASRRINLSFIIKPTRISEDDMVK 663

Query: 544  LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
            LGS+V GVVD VTP+A++V V AKGY KGTI TEHLADH  HA +MKS +KPGYEFDQLL
Sbjct: 664  LGSVVGGVVDRVTPHAIIVNVSAKGYLKGTISTEHLADHQGHAALMKSTLKPGYEFDQLL 723

Query: 604  VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            VLD E +N +LSAKYSLINSAQQLP D + IHPNSVVHGY+CNIIETGCFVRFLGRLTGF
Sbjct: 724  VLDVEGNNFILSAKYSLINSAQQLPLDLTQIHPNSVVHGYICNIIETGCFVRFLGRLTGF 783

Query: 664  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 723
            +PR+K +D QRA  S+ +++GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF+QE+FL
Sbjct: 784  SPRNKVMDDQRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFL 843

Query: 724  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 783
            LEEKIA LQ S    SELKW EGF IG+VIEGK+H++ DFGVV+SFE+++DV+GFITH+Q
Sbjct: 844  LEEKIAKLQLSDSEHSELKWAEGFNIGTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQ 903

Query: 784  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 843
            L   T E GS +QA +LDVAK ERLVDLSLK  F+DR +E +SN QA KKKR+REA K+L
Sbjct: 904  L---TAERGSTVQAVVLDVAKTERLVDLSLKPEFLDRHKEDSSNSQAGKKKRRREAYKEL 960

Query: 844  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 903
              HQTVNAIVEIVKENYL  S                      +KQFL+GQSVIA+VMAL
Sbjct: 961  QPHQTVNAIVEIVKENYLASSF-------------------IARKQFLHGQSVIASVMAL 1001

Query: 904  PSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 962
            PS ST GRLLL+LK++SE TETSSSKRAKKKSSY+VGSLVQAEITEIKPLELRLKFGIGF
Sbjct: 1002 PSPSTVGRLLLVLKSVSEATETSSSKRAKKKSSYNVGSLVQAEITEIKPLELRLKFGIGF 1061

Query: 963  HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLT 1021
            HGR+HITEV D+  NV+EN FSNF+IGQTV+ARI+AK+NK +   K+  WELSIKP MLT
Sbjct: 1062 HGRVHITEVCDE--NVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWELSIKPEMLT 1119

Query: 1022 VS-EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1080
             S E+ +KL+  E  +S GQRVTGYVYKV+NEW  LTISRH+KAQLF+LD++ EP+ELQE
Sbjct: 1120 GSIEVENKLVDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTSCEPNELQE 1179

Query: 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1140
            FQ+RF +GKAV+G+VLS NKEKKLLR+VL  F              N+   IH+GD +GG
Sbjct: 1180 FQKRFEVGKAVSGYVLSANKEKKLLRMVLHQFS-------------NLIPHIHKGDTLGG 1226

Query: 1141 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1200
            RISKIL GVGGL+VQIGPHLYG+VHFTELK+  VSDPL           SGY EGQFVKC
Sbjct: 1227 RISKILPGVGGLLVQIGPHLYGKVHFTELKDSWVSDPL-----------SGYHEGQFVKC 1275

Query: 1201 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1260
            KVLEI  + +GT HV+LSL SSL+GM S NS             +EKI++L  +M+VQGY
Sbjct: 1276 KVLEIGHSEKGTVHVDLSLWSSLNGMHSPNS------------RVEKIDNLHSDMLVQGY 1323

Query: 1261 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1320
            VKNVTSKGCFI+LSRKLDA++LL+NLSDGYVE PE+EFPIGKLV+GRVLSVEPLS+RVEV
Sbjct: 1324 VKNVTSKGCFILLSRKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLSVEPLSRRVEV 1383

Query: 1321 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1380
            TLKTS + +  +SE+N+ S++ VGDI+ G IKRVESYGLFITI++TN+VGLCH+SELS+D
Sbjct: 1384 TLKTSSATSVQKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMVGLCHISELSDD 1443

Query: 1381 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEV 1440
            H+ NIET Y+AGE+V  KILKVD+E+ RISLGMK+SY K    N               V
Sbjct: 1444 HISNIETKYKAGERVAAKILKVDEERHRISLGMKNSYIKETTQNNGF------------V 1491

Query: 1441 GSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMDNGIS 1499
                 S+ LEN+S  +Q++D+E ED    VL+Q+ESRAS+ PLEV+LDD    ++D+ + 
Sbjct: 1492 DDTQLSTFLENNSREIQNLDVEYEDEEYPVLSQVESRASILPLEVDLDDVNHSNLDDAVG 1551

Query: 1500 QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1559
            QN  +T+E  TIDEK+ R AKKK KEE+EQEIRAAEERL+  D PRT DEFE+LVR SPN
Sbjct: 1552 QNHIYTNETNTIDEKSKRRAKKKAKEEKEQEIRAAEERLMLNDVPRTADEFEKLVRGSPN 1611

Query: 1560 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619
            SSF+WIKYMA MLS+AD+EKARSIAERAL+TINIREE+EKLNIW+AYFNLENEYGNPPEE
Sbjct: 1612 SSFLWIKYMALMLSLADIEKARSIAERALRTINIREESEKLNIWMAYFNLENEYGNPPEE 1671

Query: 1620 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1679
            AVVKVFQRALQYCDPKKVHLALLG+YERTEQ+KLADELL KM KKFKHSCKVWLRRVQ +
Sbjct: 1672 AVVKVFQRALQYCDPKKVHLALLGMYERTEQHKLADELLEKMTKKFKHSCKVWLRRVQNV 1731

Query: 1680 LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1739
            LKQ Q+GVQ V+ RALL LPRHKHIKFISQTAILEFK+GV DRGRSMFEG+L EYPKRTD
Sbjct: 1732 LKQHQDGVQPVINRALLCLPRHKHIKFISQTAILEFKSGVPDRGRSMFEGMLREYPKRTD 1791

Query: 1740 LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1799
            LWS+YLDQEIRLGD+D+IR LFERAI+LSL P+KMKFLFKKYLEYEKS G+EERIE VK+
Sbjct: 1792 LWSVYLDQEIRLGDIDIIRALFERAINLSLEPRKMKFLFKKYLEYEKSQGDEERIESVKR 1851

Query: 1800 KAMEYVESTLA 1810
            KAMEY  STLA
Sbjct: 1852 KAMEYANSTLA 1862


>gi|356533079|ref|XP_003535096.1| PREDICTED: protein RRP5 homolog [Glycine max]
          Length = 1885

 Score = 2371 bits (6145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1200/1811 (66%), Positives = 1463/1811 (80%), Gaps = 61/1811 (3%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            +NI+ GMKLWGVVAEVNEKDLV+ LPGGLRGL  A+DA+DPI D++IE  E   L  +F 
Sbjct: 126  RNITPGMKLWGVVAEVNEKDLVVSLPGGLRGLVHASDAVDPIFDDKIEVGEI-FLSGVFC 184

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            VGQLVSC+VL+LDDDKKE G RKIWLSLRLSLL+K  +L+ VQEGMVL AYVKSIEDHGY
Sbjct: 185  VGQLVSCVVLRLDDDKKEKGSRKIWLSLRLSLLHKNYNLDVVQEGMVLAAYVKSIEDHGY 244

Query: 124  ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 183
            ILHFGLP F GFLP+N+ A   G +VK G LLQG+VRSID+ RKVVYLSSDPDT++K VT
Sbjct: 245  ILHFGLPFFMGFLPKNSSAGWGG-EVKIGKLLQGLVRSIDKVRKVVYLSSDPDTITKSVT 303

Query: 184  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 243
            KDL+G+SIDLLVPGM+V+  V+SILENGVMLSFLTYFTGTVD+FHLQN +P  NWK+  +
Sbjct: 304  KDLRGLSIDLLVPGMLVNACVKSILENGVMLSFLTYFTGTVDLFHLQNIYPGKNWKDKCS 363

Query: 244  QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 303
            + +KV +RILF+DP+SRAVGLTLNP+L+ NRAPPSHVK+GDIYD SKVVRVDRGLGLLL+
Sbjct: 364  ESQKVVSRILFIDPSSRAVGLTLNPHLVQNRAPPSHVKIGDIYDNSKVVRVDRGLGLLLE 423

Query: 304  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
            +PS P  TPA+V+               YKEG+ VRVRILG R+LEG+ATG+LKASA E 
Sbjct: 424  VPSIPEPTPAFVS---------------YKEGNHVRVRILGLRYLEGIATGVLKASALEE 468

Query: 364  LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
             VFTHSDVKPGMVVK K+++VDSFGAIVQ PGGVKALCPL HMSE EI KPGKKFKVGAE
Sbjct: 469  EVFTHSDVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEISKPGKKFKVGAE 528

Query: 424  LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
            LVFRVLG KSKR+TVTHKKTLVKSKL I+SSYA+ATD LITHGWITKIE HGCFVRFYNG
Sbjct: 529  LVFRVLGCKSKRVTVTHKKTLVKSKLGIISSYADATDGLITHGWITKIEVHGCFVRFYNG 588

Query: 484  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
            VQGFAPRSELGL+PG +P ++Y+VGQ VKCR++S IPASRRINL           +D+V 
Sbjct: 589  VQGFAPRSELGLEPGADPGTVYNVGQAVKCRVISCIPASRRINL-----------NDMVT 637

Query: 544  LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
            LGSLVSG VD +T NAVVVYV A G+S+GTI  EHLADH   A +M SV+KPGY FDQLL
Sbjct: 638  LGSLVSGAVDRITSNAVVVYVNASGFSRGTISMEHLADHHGQAILMHSVLKPGYNFDQLL 697

Query: 604  VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            VLD + +NL+LSAK SLI  AQQ+P+D + IHPNSVVHGY+CN+IE+GCFVRFLG LTGF
Sbjct: 698  VLDVKGNNLILSAKSSLIKHAQQIPADINQIHPNSVVHGYICNLIESGCFVRFLGHLTGF 757

Query: 664  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 723
            APR+KA D Q++++ + YY+GQSVRSNI +V+SETGR+TLSLKQ+ CSSTDASF+Q++FL
Sbjct: 758  APRNKAADDQKSNILEAYYIGQSVRSNISNVSSETGRVTLSLKQTACSSTDASFIQDYFL 817

Query: 724  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 783
            +++KIA L+      S+ KW EGF IG V +GKV    D G+V+SFE ++DV+GFI ++Q
Sbjct: 818  MDDKIARLEYCGSGASDTKWDEGFNIGMVAKGKVKAVEDVGLVISFEHYNDVFGFIANYQ 877

Query: 784  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 843
            LAG  +ESGS+++A +LDV KA++LV+L+LK  FI+R +E++ +R   KKKR+REASKDL
Sbjct: 878  LAGTILESGSIVEALVLDVGKADKLVELTLKPEFINRSKESSISR-TNKKKRRREASKDL 936

Query: 844  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 903
             +HQTVNA+VEIVKENYLVLS+PE +++IGYASVSDYN Q+FP KQ+ NGQSV+ATVMAL
Sbjct: 937  VLHQTVNAVVEIVKENYLVLSIPENDYTIGYASVSDYNAQRFPHKQYQNGQSVVATVMAL 996

Query: 904  PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 963
            PS  T+GRLLLL+  ++ET +SS +  KK S   VG+LV+AEIT+IK LEL+LKFG G +
Sbjct: 997  PSPETSGRLLLLVDVVNETSSSSKRTKKKSSYK-VGTLVEAEITDIKTLELKLKFGFGLY 1055

Query: 964  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD-MKKSFLWELSIKPSMLT- 1021
            GRIHITEV     NV+EN FS++K+GQTVTARI+AK N+ D  +K   WELS++P M+T 
Sbjct: 1056 GRIHITEVY--YGNVLENPFSSYKVGQTVTARIVAKPNESDGNRKGSQWELSVRPEMVTG 1113

Query: 1022 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1081
             S+I    + E  +  IGQ V GYVYKV++EW  LTISR+++AQL+ILDSA EPSEL++F
Sbjct: 1114 SSDIDD--VSENLEFKIGQCVAGYVYKVESEWVWLTISRNVRAQLYILDSATEPSELEDF 1171

Query: 1082 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD---GISDKTV-DISNDNMQTFIHEGDI 1137
            Q R+H+G+ V+GH+LS+N EKKLLRLV+RPF     G S++ + ++ + ++  ++HEGDI
Sbjct: 1172 QNRYHVGQPVSGHILSVNMEKKLLRLVVRPFSTLSCGTSEEPLTNVVDKDLTAYVHEGDI 1231

Query: 1138 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1197
            +GGR+SKIL GVGGL+VQ+GP  YG+VHFTEL +  V DPLSGY E Q           F
Sbjct: 1232 LGGRVSKILPGVGGLLVQVGPRTYGKVHFTELADTWVPDPLSGYHEEQ-----------F 1280

Query: 1198 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1257
            VKC VLE+S TV+GT HV+LSL SS   +S  ++      V+   K +EKIEDL P+MIV
Sbjct: 1281 VKCIVLEVSHTVKGTIHVDLSLGSSNVKLSQDSA------VNANSKCVEKIEDLHPDMIV 1334

Query: 1258 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1317
            +GY+KNVTSKGCFIMLSRK+DAK+LLSNLS+ YV+ PEKEFP+GKLV GRV SVEPLS R
Sbjct: 1335 KGYIKNVTSKGCFIMLSRKIDAKILLSNLSEQYVQEPEKEFPVGKLVIGRVTSVEPLSNR 1394

Query: 1318 VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1377
            VEVTLK S +    +SEI +LS  HVGD+V G+IKRVES+GLFI I+NTN+VGLCH+SE+
Sbjct: 1395 VEVTLKMSTAPNIPKSEIIDLSKFHVGDVVSGRIKRVESFGLFIAIDNTNMVGLCHISEI 1454

Query: 1378 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAI 1437
            S++ ++NIE  YRAGE+VK +ILKVD+E+ RISLGMK+SY + +   LQ+ S+EESDE I
Sbjct: 1455 SDNRIENIEANYRAGERVKARILKVDEERHRISLGMKNSYMRGET-VLQIPSKEESDEPI 1513

Query: 1438 EEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMDN 1496
              V      + + +S     ++D+E E     +L+Q + RA +PPL+V LDD +Q D +N
Sbjct: 1514 --VDGMKSITSMNSSLFGTSNIDVEDEINQFPILSQAQERADIPPLDVALDDFDQFDANN 1571

Query: 1497 GISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS 1556
              SQ++ H +E   ++EK+ R  KKK KEERE++IRAAEERLLE D PRT DEFERL+RS
Sbjct: 1572 ANSQSEEHANEEDIVNEKHKRREKKKAKEEREKQIRAAEERLLEDDVPRTADEFERLIRS 1631

Query: 1557 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1616
            SPNSSF WIKYM FM+SMADVEKARSIAERAL+TINIREENEKLNIW AYFNLEN+YGNP
Sbjct: 1632 SPNSSFTWIKYMDFMVSMADVEKARSIAERALRTINIREENEKLNIWKAYFNLENKYGNP 1691

Query: 1617 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRV 1676
             EEAV+KVFQRALQY DPKKV+LALLG+YERTEQ+ LADELL KM KKFKHSCKVWLRR+
Sbjct: 1692 REEAVMKVFQRALQYNDPKKVYLALLGMYERTEQHNLADELLNKMTKKFKHSCKVWLRRI 1751

Query: 1677 QRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1736
            Q LLKQ ++G+Q V+ RA LSLP+HKHIKF SQTAILEFK G  DRGRSMFE IL EYPK
Sbjct: 1752 QSLLKQNKDGIQPVIDRASLSLPKHKHIKFFSQTAILEFKVGFPDRGRSMFEKILREYPK 1811

Query: 1737 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1796
            RTDLWS+YLDQEI+  D D+I  LFERA+SLSLPPKKMKFLFKKYL+YE S G++ERIE 
Sbjct: 1812 RTDLWSVYLDQEIQHKDEDIIHALFERAVSLSLPPKKMKFLFKKYLDYEMSQGDQERIES 1871

Query: 1797 VKQKAMEYVES 1807
            VK+KA+EYVES
Sbjct: 1872 VKRKAIEYVES 1882


>gi|449453908|ref|XP_004144698.1| PREDICTED: protein RRP5 homolog [Cucumis sativus]
          Length = 1898

 Score = 2250 bits (5830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1164/1833 (63%), Positives = 1417/1833 (77%), Gaps = 79/1833 (4%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            +NI+  MK WGVVAEVN+KDLVI LPGGLRGL  AA+A DPIL+ E+E  E +LLP +FH
Sbjct: 119  KNINPRMKFWGVVAEVNKKDLVISLPGGLRGLVSAAEAFDPILEKEVEDTEHDLLPVMFH 178

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            VGQLV C+VL++DDDKKE GKRKIWLSLRLS+LYK  +L+ +QEGMVLT+YVKSIEDHGY
Sbjct: 179  VGQLVPCVVLKVDDDKKESGKRKIWLSLRLSMLYKDFTLDLLQEGMVLTSYVKSIEDHGY 238

Query: 124  ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 183
            ILHFGL SFTGFLP+   +    + +  G LLQ VVRSID+TRKVVY SSD D VS  V 
Sbjct: 239  ILHFGLTSFTGFLPKTKQSGKKSL-LHVGQLLQCVVRSIDKTRKVVYFSSDQDIVSSSVA 297

Query: 184  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 243
            KDLKGISIDLL+PGMMVS RVQS LENG++LSFLTYF GTVD+FHLQN+F ++NWK+ YN
Sbjct: 298  KDLKGISIDLLIPGMMVSARVQSTLENGILLSFLTYFNGTVDMFHLQNSFHSSNWKDFYN 357

Query: 244  QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 303
            Q+ K+NARILF+DP++RAVGLTL P+L+ N+A P HV++GDIYD +KVVRVDRG GLLL+
Sbjct: 358  QNMKMNARILFIDPSTRAVGLTLIPHLVRNKAAPPHVRIGDIYDSAKVVRVDRGFGLLLE 417

Query: 304  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
            +PS+P STP +V+               +KEGS VRVRILGFRHLEGLA G LKASAFEG
Sbjct: 418  VPSSPESTPTFVS---------------FKEGSRVRVRILGFRHLEGLAIGTLKASAFEG 462

Query: 364  LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
             VF++SDVKPG +++ KVI VD FGAIVQFPGG+KALCPL HMSEFEI KP KKFKVGAE
Sbjct: 463  PVFSYSDVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAE 522

Query: 424  LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
            L+FRVLG KSKRITVTHKKTLVKSKL +LSSYA+AT  L+THGWITKIEKHGCFVRFYNG
Sbjct: 523  LIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIEKHGCFVRFYNG 582

Query: 484  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
            VQGFAPR ELG++PG +PSS YH+GQV+KCRI SS  +S+RI+L           +  V+
Sbjct: 583  VQGFAPRFELGIEPGSDPSSTYHIGQVIKCRITSSTHSSKRISL-----------NTKVE 631

Query: 544  LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
            LG +V+GVVD +T   V +Y+    YS+G I TEHL+DH  HA+ +KSV+KPGY+FDQLL
Sbjct: 632  LGCIVTGVVDEITETHVTLYINRTDYSRGRISTEHLSDHQAHASSIKSVLKPGYQFDQLL 691

Query: 604  VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            VL  E  +L+LSAK SLI  A  LPSD+SH++P S++HG++CNIIE GCFVRFLGRLTGF
Sbjct: 692  VLAIEGESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICNIIEAGCFVRFLGRLTGF 751

Query: 664  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 723
            +PR+KA+  Q+  L +TYY+GQSVRSN++DV+ ETGRITLSLKQS C STDASF+QE F 
Sbjct: 752  SPRNKAMQDQKLYLRETYYIGQSVRSNVVDVSGETGRITLSLKQSTCFSTDASFIQEFFS 811

Query: 724  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 783
             EEKIA LQS      E  W E F IGSV+EG+V E  D GV +SFE++ DV+GFI  H 
Sbjct: 812  TEEKIAKLQSL----DESNWAEEFAIGSVVEGEVQEVKDIGVTISFEKYHDVFGFIALHG 867

Query: 784  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 843
            L+G+ VE+GS IQAA+LDV+K ERLVDLSLK   +D++   +S+RQ  +KKRK EA KDL
Sbjct: 868  LSGSIVETGSTIQAAVLDVSKTERLVDLSLKPELVDKW-GGSSSRQTNRKKRKAEAPKDL 926

Query: 844  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 903
             ++QTV+ +VE VKENYLVLSLPE+ H+IGYAS  DYNTQ+  QK F  GQSV+ATV+AL
Sbjct: 927  EMNQTVHTVVEAVKENYLVLSLPEFGHAIGYASTYDYNTQRLHQKHFTVGQSVVATVVAL 986

Query: 904  PSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 962
            P  ST GRLLLLLK+ISE   T  SKR++K SS +VGSLV AEI +++PLE+RLKFG+G 
Sbjct: 987  PCPSTFGRLLLLLKSISEAIVTPGSKRSRKNSSCEVGSLVHAEIIDVQPLEMRLKFGVGL 1046

Query: 963  HGRIHITE----VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKP 1017
             GRIH+TE    V++      E  FSNF++GQTV ARI+A++N    K K +LWELS+KP
Sbjct: 1047 RGRIHVTEFCAQVSNTPDEASEAPFSNFRVGQTVVARIVAEANHSASKGKGYLWELSVKP 1106

Query: 1018 SMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1076
             +L   S +G +++ E+   SIGQRVT YV  V+ +WA L ++R + AQLFILDS+ EPS
Sbjct: 1107 EVLKDFSAVGGEIVNEDLGFSIGQRVTAYVSNVNGDWAWLAVTRRVSAQLFILDSSSEPS 1166

Query: 1077 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR---PFQDGISD----KTVDISNDNMQ 1129
            ELQEF + F++GKAV+G++ +I  EKK+LRLVL        G SD    K  ++  D  +
Sbjct: 1167 ELQEFSKHFYVGKAVSGYISNIIGEKKILRLVLHHLSAISSGKSDEENSKISNLPTDVCK 1226

Query: 1130 TFI---HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
              I   +EGDIVGGRISKIL GVGGL+VQIGPHL+GRVH+TEL +  V DPLSGY E   
Sbjct: 1227 KVICHLNEGDIVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPLSGYKE--- 1283

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                    GQFVKCKV+EI+  V+GT H++LSLRSS   +   N    + +    G+   
Sbjct: 1284 --------GQFVKCKVIEITHAVKGTTHIDLSLRSSAGILCQKNIECSNHENIASGR--V 1333

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            KIED+  +M VQGYVKN++ KGCFIMLSR L+AK+LLSNLSDGY+++PEKEFP GKLV G
Sbjct: 1334 KIEDIHAHMEVQGYVKNISPKGCFIMLSRGLEAKILLSNLSDGYIDNPEKEFPTGKLVRG 1393

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            R+LSVEPLSKRVEVTLK+     A +   N+L +   GDI+ G+IKRVES+GLFI+I+NT
Sbjct: 1394 RILSVEPLSKRVEVTLKSVTETGALRGSNNDLRSFSAGDIISGRIKRVESFGLFISIDNT 1453

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            ++VGLCHVSE+S+D V+++E  Y AG+ VK K+LKVD+++ RI+LGMK SY   +   L 
Sbjct: 1454 DVVGLCHVSEVSDDPVESLEFRYHAGDTVKAKVLKVDEKRHRIALGMKRSYI-GERSELC 1512

Query: 1427 MSSEEESDEAIEE---VGSYNRSSLLENSSVAVQDM-----DMESEDGGSLVLAQIESRA 1478
             + EEE ++A +    +G    S   ++SS   +DM     ++E E    L LA  ESRA
Sbjct: 1513 TNMEEEHEDAADGDNFIGETRLSMDPDSSSTKFKDMDDDFDNIEPEQ--PLRLA--ESRA 1568

Query: 1479 SVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEER 1537
             VP LEV LDD ++ DM    S+N+  T    +  EKN+R  KKK KEERE E+RAAEER
Sbjct: 1569 LVPSLEVTLDDIDETDMVTLQSENKELTSGTDS-KEKNDRREKKKAKEEREMEVRAAEER 1627

Query: 1538 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1597
            LL+ ++P T DEFE+LVRSSPNSSFVWIKYM F    ADVEKARSIAERAL+TINIREEN
Sbjct: 1628 LLQNNSPTTVDEFEKLVRSSPNSSFVWIKYMDFF--KADVEKARSIAERALRTINIREEN 1685

Query: 1598 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1657
            EKLN+W+AYFNLENEYGNP E+AV K+FQRALQ  DPKKVHLALLG+YERT Q+ LADEL
Sbjct: 1686 EKLNVWLAYFNLENEYGNPKEDAVTKIFQRALQCNDPKKVHLALLGMYERTNQDNLADEL 1745

Query: 1658 LYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
            L KMIK+FKHSCKVWLRR++ L K++Q  +Q++V RALL LP+ KHIK+ISQTAILEFK 
Sbjct: 1746 LDKMIKRFKHSCKVWLRRMESLFKKKQVEIQSIVNRALLCLPKRKHIKYISQTAILEFKC 1805

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1777
            GVADRGRSMFEGIL EYPKRTDLWSIYLDQEIRLGD D+IR LFERAISLSL PKKMKFL
Sbjct: 1806 GVADRGRSMFEGILREYPKRTDLWSIYLDQEIRLGDKDMIRALFERAISLSLAPKKMKFL 1865

Query: 1778 FKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            FKKYLEYEKSVG+EERIE VKQKA+EYVE+TLA
Sbjct: 1866 FKKYLEYEKSVGDEERIESVKQKALEYVENTLA 1898


>gi|240255326|ref|NP_187803.4| RNA binding protein [Arabidopsis thaliana]
 gi|332641610|gb|AEE75131.1| RNA binding protein [Arabidopsis thaliana]
          Length = 1896

 Score = 2245 bits (5818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1148/1826 (62%), Positives = 1422/1826 (77%), Gaps = 71/1826 (3%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            +NIS GMKL GVV EVN+KD+VI LPGGLRGL RA++  D   D  IE +E+ LL  IF 
Sbjct: 123  KNISPGMKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSD-FTDRGIEDDENELLGDIFS 181

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            VGQLV CIVL+LDDDKKE GKRKIWLSLRLSLL+KG S ++ Q GMV +A VKSIEDHG 
Sbjct: 182  VGQLVPCIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHGS 241

Query: 124  ILHFGLPSFTGFLP-RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 182
            ILHFGLPS TGF+   ++  + SG+  K G L+QGVV  IDR RK+V+LSSDPD+V+KC+
Sbjct: 242  ILHFGLPSITGFIEISDDGNQESGM--KTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCL 299

Query: 183  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 242
            TKDL G+S DLL+PGMMV+ RVQS+LENG++  FLTYF GTVD+FHL+N     +WK++Y
Sbjct: 300  TKDLSGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEY 359

Query: 243  NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL 302
            NQ+K VNARILF+DP+SRAVGLTL+P+++ N+APP HV  GDI+D++KVVR+D+  GLLL
Sbjct: 360  NQNKTVNARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKS-GLLL 418

Query: 303  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 362
            ++PS P  TPAYV+               +KEG+ +RVR+LG + +EGLA G LK SAFE
Sbjct: 419  ELPSKPTPTPAYVS---------------FKEGNHIRVRVLGLKQMEGLAVGTLKESAFE 463

Query: 363  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 422
            G VFTHSDVKPGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEFE+ KP KKFKVGA
Sbjct: 464  GPVFTHSDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGA 523

Query: 423  ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 482
            ELVFRVLG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWITKIEKHGCFVRFYN
Sbjct: 524  ELVFRVLGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYN 583

Query: 483  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 542
            GVQGF PR ELGL+PG +P S++HVG+VVKCR+ S++  ++RI L           +D +
Sbjct: 584  GVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITL-----------NDSI 632

Query: 543  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 602
            KLGS+VSG++D +T  AV+V V +K   KGTI  EHLADH E A ++ S+++PGYE D+L
Sbjct: 633  KLGSIVSGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELDKL 692

Query: 603  LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
            LVLD E +N+ LS+KYSLI  A++LPSD + + PNSVVHGYVCN+IE GCFVRFLGRLTG
Sbjct: 693  LVLDIEGNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGRLTG 752

Query: 663  FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 722
            FAPRSKA+D  +AD+S++++VGQSVR+NI+DVN E  RITLSLKQS C+S DASF+QE+F
Sbjct: 753  FAPRSKAIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYF 812

Query: 723  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 782
            L++EKI+ LQSS    S+  WVE F IGS+I+G + E ND GVVV+F+  ++V GFI  H
Sbjct: 813  LMDEKISDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQH 872

Query: 783  QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 842
             + GAT+  GSV+ A +LD+++AERLVDLSL+   ++   +  SN  + KKKRKR  SK+
Sbjct: 873  HMGGATLVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKE 930

Query: 843  LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 902
            L VHQ V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF  GQSV+A+V A
Sbjct: 931  LEVHQRVSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKA 990

Query: 903  LPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIG 961
            + +  T+GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AEITEIKP ELR+ FG  
Sbjct: 991  VQNPLTSGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAEITEIKPFELRVNFGNS 1050

Query: 962  FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1021
            F GRIHITEV  + ++  +  F+ F++GQ+++AR++AK    D+KK+ LWELS+KP+ML 
Sbjct: 1051 FRGRIHITEVLVNDASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLK 1110

Query: 1022 -VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1080
              SE       E+ + + GQ V GYVYKVD EW  L +SR++ A++FILD++ +  EL+E
Sbjct: 1111 DSSEFNDTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEE 1170

Query: 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQ 1129
            F+RRF IGKAV+G+VL+ NKEKK LRLV RP         +G   KT      I  D+  
Sbjct: 1171 FERRFPIGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDT 1230

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
             FIHEGDI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ +  V DPL G+ EGQ    
Sbjct: 1231 LFIHEGDILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQ---- 1286

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEK 1247
                   FVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL  + D   K  E+
Sbjct: 1287 -------FVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFER 1338

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            IEDLSP+M VQGYVKN  SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV GR
Sbjct: 1339 IEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGR 1398

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            VL+VEPLSKR+EVTLKT ++    +SE  +L  LHVGD++ G+I+RVE +GLFI I+ T 
Sbjct: 1399 VLNVEPLSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTG 1458

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQ 1426
            +VGLCH+S+LS+D ++N++  Y+AGE V+ KILK+D+EK+RISLGMKSSY  N D D  Q
Sbjct: 1459 MVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDDKAQ 1518

Query: 1427 MSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG-SLVLAQIESRASVPPLEV 1485
              SE+ +    + +       L      AV D   +   GG SLVLAQ+ESRAS+PPLEV
Sbjct: 1519 PLSEDNTSMECDPINDPKSEVL-----AAVDDFGFQETSGGTSLVLAQVESRASIPPLEV 1573

Query: 1486 NLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAP 1544
            +LDD E+ D D+  SQNQ     A   DEK+ R  K+K+KEERE++I+AAE RLLE  AP
Sbjct: 1574 DLDDIEETDFDS--SQNQEKLLGANK-DEKSKRREKQKDKEEREKKIQAAEGRLLEHHAP 1630

Query: 1545 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1604
               DEFE+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAERAL+TINIREE EKLNIWV
Sbjct: 1631 ENADEFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWV 1690

Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1664
            AYFNLENE+GNPPEE+V KVF+RA QYCDPKKV+LALLG+YERTEQ KLAD+LL +MIKK
Sbjct: 1691 AYFNLENEHGNPPEESVKKVFERARQYCDPKKVYLALLGVYERTEQYKLADKLLDEMIKK 1750

Query: 1665 FKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1724
            FK SCK+WLR++Q  LKQ +E +Q+VV RALL LPRHKHIKFISQTAILEFK GVADRGR
Sbjct: 1751 FKQSCKIWLRKIQSSLKQNEEAIQSVVNRALLCLPRHKHIKFISQTAILEFKCGVADRGR 1810

Query: 1725 SMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1784
            S+FEG+L EYPKRTDLWS+YLDQEIRLG+ D+IR LFERAISLSLPPKKMKFLFKK+LEY
Sbjct: 1811 SLFEGVLREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKFLEY 1870

Query: 1785 EKSVGEEERIEYVKQKAMEYVESTLA 1810
            EKSVG+EER+EYVKQ+AMEY  STLA
Sbjct: 1871 EKSVGDEERVEYVKQRAMEYANSTLA 1896


>gi|10998136|dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis thaliana]
          Length = 1765

 Score = 2232 bits (5783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1144/1820 (62%), Positives = 1416/1820 (77%), Gaps = 74/1820 (4%)

Query: 10   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 69
            MKL GVV EVN+KD+VI LPGGLRGL RA++  D   D  IE +E+ LL  IF VGQLV 
Sbjct: 1    MKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVP 59

Query: 70   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 129
            CIVL+LDDDKKE GKRKIWLSLRLSLL+KG S ++ Q GMV +A VKSIEDHG ILHFGL
Sbjct: 60   CIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGL 119

Query: 130  PSFTGFLP-RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG 188
            PS TGF+   ++  + SG+  K G L+QGVV  IDR RK+V+LSSDPD+V+KC+TKDL G
Sbjct: 120  PSITGFIEISDDGNQESGM--KTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSG 177

Query: 189  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 248
            +S DLL+PGMMV+ RVQS+LENG++  FLTYF GTVD+FHL+N     +WK++YNQ+K V
Sbjct: 178  MSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTV 237

Query: 249  NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 308
            NARILF+DP+SRAVGLTL+P+++ N+APP HV  GDI+D++KVVR+D+  GLLL++PS P
Sbjct: 238  NARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKP 296

Query: 309  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 368
              TPAY    D A +EV KLEKK+KEG+ +RVR+LG + +EGLA G LK SAFEG VFTH
Sbjct: 297  TPTPAYTY--DAAGDEVTKLEKKFKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTH 354

Query: 369  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
            SDVKPGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRV
Sbjct: 355  SDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRV 414

Query: 429  LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
            LG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF 
Sbjct: 415  LGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFV 474

Query: 489  PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLV 548
            PR ELGL+PG +P S++HVG+VVKCR+ S++  ++RI LSFM+KP+ VSEDD +KLGS+V
Sbjct: 475  PRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSEDDSIKLGSIV 534

Query: 549  SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 608
            SG++D +T  AV+V V +K   KGTI  EHLADH E A ++ S+++PGYE D+LLVLD E
Sbjct: 535  SGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIE 594

Query: 609  SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
             +N+ LS+KYSLI  A++LPSD + + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSK
Sbjct: 595  GNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSK 654

Query: 669  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 728
            A+D  +AD+S++++VGQSVR+NI+DVN E  RITLSLKQS C+S DASF+QE+FL++EKI
Sbjct: 655  AIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKI 714

Query: 729  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 788
            + LQSS    S+  WVE F IGS+I+G + E ND GVVV+F+  ++V GFI  H + GAT
Sbjct: 715  SDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGAT 774

Query: 789  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 848
            +  GSV+ A +LD+++AERLVDLSL+   ++   +  SN  + KKKRKR  SK+L VHQ 
Sbjct: 775  LVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQR 832

Query: 849  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 908
            V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF  GQSV+A+V A+ +  T
Sbjct: 833  VSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLT 892

Query: 909  AGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 967
            +GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AE                      
Sbjct: 893  SGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAE---------------------- 930

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIG 1026
               VND  ++  +  F+ F++GQ+++AR++AK    D+KK+ LWELS+KP+ML   SE  
Sbjct: 931  ---VND--ASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFN 985

Query: 1027 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1086
                 E+ + + GQ V GYVYKVD EW  L +SR++ A++FILD++ +  EL+EF+RRF 
Sbjct: 986  DTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFP 1045

Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQTFIHEG 1135
            IGKAV+G+VL+ NKEKK LRLV RP         +G   KT      I  D+   FIHEG
Sbjct: 1046 IGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEG 1105

Query: 1136 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1195
            DI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ +  V DPL G+ EGQ          
Sbjct: 1106 DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQ---------- 1155

Query: 1196 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSP 1253
             FVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL  + D   K  E+IEDLSP
Sbjct: 1156 -FVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSP 1213

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
            +M VQGYVKN  SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEP
Sbjct: 1214 DMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEP 1273

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
            LSKR+EVTLKT ++    +SE  +L  LHVGD++ G+I+RVE +GLFI I+ T +VGLCH
Sbjct: 1274 LSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCH 1333

Query: 1374 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEE 1432
            +S+LS+D ++N++  Y+AGE V+ KILK+D+EK+RISLGMKSSY  N D D  Q  SE+ 
Sbjct: 1334 ISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDN 1393

Query: 1433 SDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG-SLVLAQIESRASVPPLEVNLDD-E 1490
            +    + +       L      AV D   +   GG SLVLAQ+ESRAS+PPLEV+LDD E
Sbjct: 1394 TSMECDPINDPKSEVL-----AAVDDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIE 1448

Query: 1491 QPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEF 1550
            + D D+  SQNQ     A   DEK+ R  K+K+KEERE++I+AAE RLLE  AP   DEF
Sbjct: 1449 ETDFDS--SQNQEKLLGANK-DEKSKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEF 1505

Query: 1551 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1610
            E+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAERAL+TINIREE EKLNIWVAYFNLE
Sbjct: 1506 EKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNLE 1565

Query: 1611 NEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK 1670
            NE+GNPPEE+V KVF+RA QYCDPKKV+LALLG+YERTEQ KLAD+LL +MIKKFK SCK
Sbjct: 1566 NEHGNPPEESVKKVFERARQYCDPKKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCK 1625

Query: 1671 VWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1730
            +WLR++Q  LKQ +E +Q+VV RALL LPRHKHIKFISQTAILEFK GVADRGRS+FEG+
Sbjct: 1626 IWLRKIQSSLKQNEEAIQSVVNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGV 1685

Query: 1731 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1790
            L EYPKRTDLWS+YLDQEIRLG+ D+IR LFERAISLSLPPKKMKFLFKK+LEYEKSVG+
Sbjct: 1686 LREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGD 1745

Query: 1791 EERIEYVKQKAMEYVESTLA 1810
            EER+EYVKQ+AMEY  STLA
Sbjct: 1746 EERVEYVKQRAMEYANSTLA 1765


>gi|297833988|ref|XP_002884876.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330716|gb|EFH61135.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1843

 Score = 2127 bits (5510), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1090/1725 (63%), Positives = 1347/1725 (78%), Gaps = 74/1725 (4%)

Query: 110  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 169
            V +A VKS+EDHGYILHFGLPS +GF+  +N      + +K G L+QGVV  IDR RKVV
Sbjct: 169  VFSANVKSVEDHGYILHFGLPSISGFIEISNDGNQESV-MKTGQLIQGVVTKIDRDRKVV 227

Query: 170  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 229
            +LSSDPD+V+KC+TKDL G+S DLL+PGMMV+ RVQS+LENG++  FLTYF GTVD+FHL
Sbjct: 228  HLSSDPDSVAKCLTKDLNGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHL 287

Query: 230  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 289
            +N     +WK++YNQ+K VNARILF+DP+SRAVGLTLNP+L+ N+APP HV  GDI+D++
Sbjct: 288  KNPLSNKSWKDEYNQNKMVNARILFIDPSSRAVGLTLNPHLVCNKAPPLHVFSGDIFDEA 347

Query: 290  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 349
            KVVR+D+  GLLL++PS PV  PAY++               +KEG+ +RVRILG + +E
Sbjct: 348  KVVRIDKS-GLLLELPSKPVPNPAYIS---------------FKEGNHIRVRILGLKQME 391

Query: 350  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
            GLA G LK SAFEG VFTHSDV+PGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEF
Sbjct: 392  GLAIGTLKESAFEGPVFTHSDVRPGMVTKAKVISVDTFGAIVQFAGGLKAMCPLRHMSEF 451

Query: 410  EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
            E++KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWIT
Sbjct: 452  EVMKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWIT 511

Query: 470  KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
            KIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VVKCR+ S++  SRRI L  
Sbjct: 512  KIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGSRRITL-- 569

Query: 530  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 589
                     +D +KLGS+VSG+VD +T  AV+V V +KG  KGTI TEHLADH + A +M
Sbjct: 570  ---------NDSIKLGSIVSGIVDSITSQAVIVRVKSKGVLKGTISTEHLADHHDQAKLM 620

Query: 590  KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 649
             S+++PGYE D+LLVLD E +NL LS+KYSLI  A++LPSD + + PNSVVHGYVCN+IE
Sbjct: 621  MSLLRPGYELDKLLVLDIEGNNLSLSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIE 680

Query: 650  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
             GCFVRFLGRLTGFAPRSKA+D  RADLS++++VGQSVR+NI+DVN E  RITLSLKQS 
Sbjct: 681  NGCFVRFLGRLTGFAPRSKAIDDPRADLSESFFVGQSVRANIVDVNQEKSRITLSLKQSS 740

Query: 710  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
            C+S DASF+QE+FL++EKI+ LQSS    SE  WVE F IGS+I+G + E ND GVVV+F
Sbjct: 741  CASVDASFVQEYFLMDEKISDLQSSDITKSEYSWVEKFSIGSLIKGTLQEQNDLGVVVNF 800

Query: 770  EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 829
            +  ++V GFI  H + GAT+  GSV+ A +LD+++AERLVDLSL+   I+   +  SN Q
Sbjct: 801  DNINNVLGFIPQHHMGGATMVPGSVVNAVVLDISRAERLVDLSLRPELINNLTKEVSNSQ 860

Query: 830  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 889
              KKKRKR  SK+L VHQ V+A+VEIVKE +LVLS+PE+ +++GYAS+SDYNTQK P KQ
Sbjct: 861  L-KKKRKRGISKELEVHQRVSAVVEIVKEQHLVLSIPEHGYTVGYASLSDYNTQKLPVKQ 919

Query: 890  FLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITE 948
            F  GQSV+A+V A+ +  T+GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AEITE
Sbjct: 920  FSTGQSVVASVEAVQNPLTSGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAEITE 979

Query: 949  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1008
            IKP ELR+ FG  F GRIHITEVND  ++  +  F+ F++GQ+++AR+++K    D+KKS
Sbjct: 980  IKPFELRVNFGNSFRGRIHITEVND--ASTSDEPFAKFRVGQSMSARVVSKPCHTDIKKS 1037

Query: 1009 FLWELSIKPSML-TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1067
             LWELS+KP+ML   SE+      E+ +   GQ V GYVYKVD EW  L ISR++ A++F
Sbjct: 1038 QLWELSVKPAMLRDSSELNDIQESEQLEFVAGQCVNGYVYKVDKEWVWLAISRNVTARIF 1097

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD-------GISDKT 1120
            ILD+A E  EL+EF+R F IGKAV+G+VL+ NKEK+ LRLV RP  D       G   KT
Sbjct: 1098 ILDTACEAHELEEFERHFPIGKAVSGYVLTYNKEKRTLRLVQRPLLDIHKSIANGGGSKT 1157

Query: 1121 ----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1176
                + I  D+   FIHEGDI+GGRISKIL GVGGL VQIGP+++GRVHFTE+ ++ V +
Sbjct: 1158 DKLDISIPGDDGTLFIHEGDILGGRISKILPGVGGLRVQIGPYVFGRVHFTEINDLWVPN 1217

Query: 1177 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDL 1234
            PL G+ EGQ           FVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL
Sbjct: 1218 PLDGFREGQ-----------FVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHISEDL 1266

Query: 1235 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1294
            + + D   K  E+ EDLS +M VQGYVKN  SKGCFI+LSRK++AKV LSNL D +V+ P
Sbjct: 1267 NNN-DNVCKRFERFEDLSLDMGVQGYVKNTMSKGCFIILSRKVEAKVKLSNLCDTFVKEP 1325

Query: 1295 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1354
            EKEFP+GKLV GRVL+VEPLSKR+EVTLKT ++    +SE  ++  LHVGD++ G+IKRV
Sbjct: 1326 EKEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGQPKSESYDMKKLHVGDMISGRIKRV 1385

Query: 1355 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            E YGLFI I+   +VGLCH+++LS+D ++N++  Y+AGE V  KILK+D+EKRRISLGMK
Sbjct: 1386 EPYGLFIDIDQIGMVGLCHITQLSDDRIENVQARYKAGESVSAKILKLDEEKRRISLGMK 1445

Query: 1415 SSYFKNDAD-NLQMSSEEESDEAIEEVGSYNRSSLLENSSV--AVQDMDMESEDGG---- 1467
            SSY  N  D   Q  SEE++DE   E    N      N+ V  AV D   +   GG    
Sbjct: 1446 SSYLMNGDDVKAQPPSEEKADETSMECDPINDP----NTEVLAAVGDFGFQETSGGRHSG 1501

Query: 1468 -SLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKE 1525
             SLVLAQ++SRAS+PPLEV+LDD E+ D DN  +QNQ     A   DEK+ R  K+K+KE
Sbjct: 1502 ASLVLAQVDSRASIPPLEVDLDDIEEMDFDN--NQNQEKLLGADK-DEKSKRREKQKDKE 1558

Query: 1526 EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1585
            ERE++I+AAE RLLE  AP + DEFE+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAE
Sbjct: 1559 EREKKIQAAEGRLLEHHAPESADEFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAE 1618

Query: 1586 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1645
            RAL+TINIREE EKLNIWVAYFNLENE+G+PPEEAV KVF+RA QYCDPKKV+LALLG+Y
Sbjct: 1619 RALRTINIREEEEKLNIWVAYFNLENEHGSPPEEAVKKVFERARQYCDPKKVYLALLGVY 1678

Query: 1646 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIK 1705
            ERTEQ KL D+LL +M+KKFK SCK+WLR++Q  L+Q +EG+Q+VV RALL LPRHKHIK
Sbjct: 1679 ERTEQYKLVDKLLDEMVKKFKQSCKIWLRKIQSSLQQNEEGIQSVVNRALLCLPRHKHIK 1738

Query: 1706 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765
            FISQTAILEFK GVADRGRS+FEG+L EYPKRTDLWS+YLDQEIRLG+VD+IR LFERAI
Sbjct: 1739 FISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEVDVIRSLFERAI 1798

Query: 1766 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            SLSLPPKKMKFLFKK+LEYE+SVGEEER EYVKQ+A+EY +STLA
Sbjct: 1799 SLSLPPKKMKFLFKKFLEYERSVGEEERAEYVKQRALEYAKSTLA 1843



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 200/480 (41%), Gaps = 75/480 (15%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD-------------------- 43
           +NIS GMKL GVV EVN+KD+VI LPGGLRGL RA++A D                    
Sbjct: 122 KNISPGMKLLGVVIEVNQKDIVISLPGGLRGLVRASEASDFTDLGIEVFSANVKSVEDHG 181

Query: 44  -------PILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKK--EIGKRKIWLSLRLS 94
                  P +   IE + D    ++   GQL+  +V ++D D+K   +      ++  L+
Sbjct: 182 YILHFGLPSISGFIEISNDGNQESVMKTGQLIQGVVTKIDRDRKVVHLSSDPDSVAKCLT 241

Query: 95  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG----FLPRNNLAENSGID-V 149
               G+S + +  GM++ A V+S+ ++G +  F L  F G    F  +N L+  S  D  
Sbjct: 242 KDLNGMSFDLLIPGMMVNARVQSVLENGILFDF-LTYFNGTVDLFHLKNPLSNKSWKDEY 300

Query: 150 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 209
               ++   +  ID + + V L+ +P  V        K   + +    +    +V  I +
Sbjct: 301 NQNKMVNARILFIDPSSRAVGLTLNPHLVCN------KAPPLHVFSGDIFDEAKVVRIDK 354

Query: 210 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL--- 266
           +G++L   +               P   + + + +   +  RIL +         TL   
Sbjct: 355 SGLLLELPS------------KPVPNPAYIS-FKEGNHIRVRILGLKQMEGLAIGTLKES 401

Query: 267 ---NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 323
               P   H+   P  V       ++KV+ VD   G ++          A   +  ++E 
Sbjct: 402 AFEGPVFTHSDVRPGMVT------KAKVISVDT-FGAIVQFAG---GLKAMCPLRHMSEF 451

Query: 324 EVRKLEKKYKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKV 381
           EV K  KK+K G+ +  R+LG +      T    L  S    ++ +++D   G+V  G +
Sbjct: 452 EVMKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLP-ILSSYTDATEGLVTHGWI 510

Query: 382 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 439
             ++  G  V+F  GV+   P   +       P   F VG  +  RV      S+RIT+ 
Sbjct: 511 TKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGSRRITLN 570


>gi|222636634|gb|EEE66766.1| hypothetical protein OsJ_23484 [Oryza sativa Japonica Group]
          Length = 1898

 Score = 1960 bits (5077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1021/1817 (56%), Positives = 1338/1817 (73%), Gaps = 63/1817 (3%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            +NIS  MKLWGVV EVN+KD+V+ LPGG+RG  R+ +  D       + +E ++   + H
Sbjct: 135  KNISPNMKLWGVVIEVNQKDIVVSLPGGMRGFVRSEEVHDITSQETRKDSEGSICADVVH 194

Query: 64   VGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 121
            VGQLV CIVL++DDD KE GK  +++WLSLRLS +YKGLSL+ +Q+GMVLTA VKSIEDH
Sbjct: 195  VGQLVPCIVLRVDDDNKE-GKVNKRVWLSLRLSRIYKGLSLDAIQDGMVLTAQVKSIEDH 253

Query: 122  GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 181
            GYILHFG+ SF+GF+P+   A+     ++ G L+Q VV++ID+ R++V+LSSD D +SK 
Sbjct: 254  GYILHFGVSSFSGFMPK---ADRESAKIESGQLIQCVVKAIDKAREIVHLSSDEDLLSKS 310

Query: 182  VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 241
            + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFLTYFTGT DIF+L N+FP+ +WK+D
Sbjct: 311  IIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFLTYFTGTADIFNLSNSFPSGSWKDD 370

Query: 242  YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 301
            Y ++KKVNARILFVDP++RAVGLTLN  LL  + P  +VK G+IYD+++V+R+D+  GL 
Sbjct: 371  YIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPSINVKAGEIYDKARVLRMDKRAGLF 430

Query: 302  LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 361
            L+IPS P  +P +V+I DV++++V+ +EKK+KEGS  RVR+LG RHLEG+A G LK SAF
Sbjct: 431  LEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSMARVRVLGVRHLEGVAIGTLKESAF 489

Query: 362  EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-IVKPGKKFKV 420
            EG VFTH+DVKPGMVV+ KV+ V+ FGAIVQF  GVKALCPLPHMSE E +VKP KKFKV
Sbjct: 490  EGSVFTHADVKPGMVVRAKVVTVEPFGAIVQFSSGVKALCPLPHMSELEHVVKPPKKFKV 549

Query: 421  GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 480
            G EL FRVLG KSKRITVT KK+LVKSKL +L+SYA+A   L+THGWITKIEKHGCFV+F
Sbjct: 550  GVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYADAKIGLLTHGWITKIEKHGCFVKF 609

Query: 481  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
            YNGVQGF  RSELGL+PG E  ++YHVGQVVKCR++S +PASR+IN++F++   RV + D
Sbjct: 610  YNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVVSVVPASRKINVTFLISTNRVIQAD 669

Query: 541  LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 600
              K+GS+VSGVV+ +TP AVVV V   G+ KG+I  EHLADH   A  +K+++KPG+EF 
Sbjct: 670  TPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILNEHLADHRGQAAQLKNLLKPGHEFS 727

Query: 601  QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
            +LLVLD E  NL+LSAK SLIN A  +PS+ S +H  SV HGYVCNIIE GCFVRFLG L
Sbjct: 728  ELLVLDVEGQNLVLSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGCFVRFLGHL 787

Query: 661  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            TGF+P+ KAVD     LS  +YVGQSVRS+IL+VN+E+ R+ LSL+QS CSS D SF+Q 
Sbjct: 788  TGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNAESARVKLSLQQSMCSSADCSFVQG 847

Query: 721  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 780
            +FLL++KI  L+ S  + S   W+  F IG+++EG+V    ++GV+++F+ H DV G I 
Sbjct: 848  YFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGEVGAIEEYGVILNFQSHPDVVGLIE 907

Query: 781  HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 840
            HHQL  ++VE GS ++  ++D++    +V++SLK+  +      + ++  +KKKR R A 
Sbjct: 908  HHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSELV-----RSVSKVGKKKKRHRAAV 960

Query: 841  KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATV 900
             DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A + DYN+Q  P   + NGQ +   V
Sbjct: 961  MDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAPLMDYNSQLLPCCNYENGQRITVVV 1020

Query: 901  MALPSSSTAGRLLLLLKAISETETSSSKRAKKKS-SYDVGSLVQAEITEIKPLELRLKFG 959
             ++PSS   GRLLLL KA  +  + SS +  KK   + VGSLV+AEI +IKPLEL LKFG
Sbjct: 1021 GSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSDFKVGSLVEAEIIDIKPLELLLKFG 1080

Query: 960  IGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPS 1018
               HGRIHITEV DD SN  +  FS  +IG++V ARI+A++       K+  WELSI+PS
Sbjct: 1081 SNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQARIVAEAEHSGKGGKNSKWELSIRPS 1138

Query: 1019 MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1078
            +L            E   SIG  V  YV KVD EW  LT+SR + A LFILDS+ EP EL
Sbjct: 1139 LLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWIWLTVSRDVMAHLFILDSSAEPGEL 1198

Query: 1079 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RPFQDGISDKTVDISNDNMQTFIHEG 1135
            ++FQ+R+ +G+AV G ++ +N+EK+LLRL     +   + I +    +S     T   +G
Sbjct: 1199 EKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQSLPENIGETQKPLSATVEHT--KQG 1256

Query: 1136 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1195
            DI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +  V +P+SG+ EGQ          
Sbjct: 1257 DIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVDSWVQEPISGFHEGQ---------- 1306

Query: 1196 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
             FVKCKVL++SR+  G+  V+LSLRSS+   +S  S  L  D        EKI DL P  
Sbjct: 1307 -FVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQSRRLFDDSRIRTSRFEKINDLCPGT 1364

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
             V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YVE+P+ +FP+G LV GRVLS EP S
Sbjct: 1365 EVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQNDFPVGLLVHGRVLSSEPQS 1424

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             +VEV+L+ +    + +S+  + S+LHVGDI+ GQ+KRVES+GLF+TI+ + LV LCHVS
Sbjct: 1425 GKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVTIQGSELVALCHVS 1484

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
            ELS++ V +I + ++AG+K+       D+E+ R+S+GMK SY   D+     +S++E DE
Sbjct: 1485 ELSDEPVLDIHSCHKAGDKI-------DEERHRVSIGMKKSYIGPDSTG--DTSDDEDDE 1535

Query: 1436 AIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD 1495
             + E  S N                M  +   +LVL + ESRASV PL+V+LD+ +    
Sbjct: 1536 IVPEEISRNPV--------------MGRDRNHALVLPKPESRASVLPLQVSLDESEGSDQ 1581

Query: 1496 NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVR 1555
               ++ Q   +  +  D+K+N+  K+K +++RE EI A EER L++D P+TPDEFE+LVR
Sbjct: 1582 ENDNKGQEIANGTEVDDKKSNKRLKEKARKQRELEISALEERALQRDIPQTPDEFEKLVR 1641

Query: 1556 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1615
            SSPNSSFVWI YMAF+L +ADV+KAR++AERAL+TINIREE EKLN+WVAYFNLENEYG+
Sbjct: 1642 SSPNSSFVWINYMAFLLDLADVDKARAVAERALRTINIREEEEKLNVWVAYFNLENEYGS 1701

Query: 1616 PPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR 1675
            P E+AV K+FQRALQYCDPKKVHLALL +YERTEQ  LADELL +M K+FK SCK+WLR 
Sbjct: 1702 PREDAVKKIFQRALQYCDPKKVHLALLAMYERTEQYTLADELLDRMTKRFKTSCKIWLRC 1761

Query: 1676 VQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE 1733
            +Q  LKQ +  E ++ +V+RALLSLP+ K  KF+SQTAILEFK GV + GRS FE IL E
Sbjct: 1762 IQLSLKQSKDVECIKLIVKRALLSLPQSKRRKFLSQTAILEFKCGVPEEGRSRFELILRE 1821

Query: 1734 YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1793
            YPKRTDLWS+YLDQEIRLGD ++IR LFER   LSLPPKKMKFLFKKYLEYEKS G+EER
Sbjct: 1822 YPKRTDLWSVYLDQEIRLGDTEIIRALFERVTCLSLPPKKMKFLFKKYLEYEKSQGDEER 1881

Query: 1794 IEYVKQKAMEYVESTLA 1810
            IE+VKQKA+EYV+S+LA
Sbjct: 1882 IEHVKQKALEYVQSSLA 1898


>gi|242043296|ref|XP_002459519.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
 gi|241922896|gb|EER96040.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
          Length = 1862

 Score = 1938 bits (5021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1015/1819 (55%), Positives = 1330/1819 (73%), Gaps = 115/1819 (6%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            +NIS  MKLWGVV EVN+KD+V+ LPGG+RG  R+ D  D  L    + +E++L   + H
Sbjct: 140  KNISPNMKLWGVVIEVNQKDIVLSLPGGIRGFVRSEDVCDIALQENRKDSENSLCAKVVH 199

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            VGQLV CIVL++DDDKKE                          G VL A VKSIEDHGY
Sbjct: 200  VGQLVPCIVLRVDDDKKE--------------------------GKVLAAQVKSIEDHGY 233

Query: 124  ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 183
            ILHFG+ SF+GF+ +++  EN  I+ +   L+  VV++ID+TR +V+LSSD D + K + 
Sbjct: 234  ILHFGVSSFSGFMQKDD-KENVKIERRQ--LMHCVVKAIDKTRAIVHLSSDEDLLCKSII 290

Query: 184  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 243
            KDLKG+SID L+PGMMV+ RV S+LENGVMLSFLTYF+GTVDIF+L N+FP+ NWK+DY+
Sbjct: 291  KDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFLTYFSGTVDIFNLLNSFPSGNWKDDYS 350

Query: 244  QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 303
            ++KKVNARILFVDP++RAVGLTLN +LLH   PP ++K GDIYD+SKV+RVD+  GL L+
Sbjct: 351  KNKKVNARILFVDPSTRAVGLTLNKHLLHLEVPPINLKAGDIYDKSKVLRVDKKAGLFLE 410

Query: 304  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
            IPS P  +P +++I DV++++ + LEK +KEGS +RVRILG R+LEG+A G +K SAFEG
Sbjct: 411  IPS-PTPSPGFISIHDVSDKDAKNLEK-FKEGSSLRVRILGVRNLEGVAIGTVKDSAFEG 468

Query: 364  LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-IVKPGKKFKVGA 422
             VFTH DVKPGM+V+ KV  V+ FGAIVQF  GVKALCPLPHMSE E +VKP KKFKVGA
Sbjct: 469  SVFTHDDVKPGMLVRAKVATVEPFGAIVQFSSGVKALCPLPHMSELEHVVKPPKKFKVGA 528

Query: 423  ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 482
            EL+FRVLG KSKR+TVT+KK+LVKSKL +L+SYA+A   L+THGWITKIEKHGCFV+FYN
Sbjct: 529  ELLFRVLGCKSKRVTVTYKKSLVKSKLDVLASYADAKIGLVTHGWITKIEKHGCFVKFYN 588

Query: 483  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 542
            GVQGF  RS+LGL+ G E  ++YHVGQVVKCRI++ IPASR++N+SF++   RV   D  
Sbjct: 589  GVQGFVSRSDLGLEAGTEAENVYHVGQVVKCRIINVIPASRKLNVSFVISHNRVIPIDTP 648

Query: 543  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 602
            KLGS+VSGVV+ +TP AVVV V   G+SKGTI  EHLADH                    
Sbjct: 649  KLGSIVSGVVERLTPAAVVVSV--NGFSKGTILNEHLADHH------------------- 687

Query: 603  LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
               D E  NL+LSAK+SLIN A  +PS+ S +HP  VVHGY+CNIIE+GCFVRFLG LTG
Sbjct: 688  ---DIEGHNLVLSAKHSLINCANDIPSEISQMHPGVVVHGYICNIIESGCFVRFLGHLTG 744

Query: 663  FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 722
            F+P+ KAVD +   LS  +YVGQSVRS+IL V +ET R+ LSL+QS CSSTD+SF+Q +F
Sbjct: 745  FSPKDKAVDRRIERLSDAFYVGQSVRSHILSVTAETARVKLSLQQSMCSSTDSSFIQGYF 804

Query: 723  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 782
            LL++KIA L+ S ++     W   F IGS++EG+V    ++G++++F++H DV G I HH
Sbjct: 805  LLDQKIAALKYSSND-----WAHTFGIGSLVEGEVGAIEEYGIILNFKDHLDVVGLIEHH 859

Query: 783  QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 842
            QL G++VE GS ++  +LD++    +V+LSLK   I   R        +KKKR+R A  D
Sbjct: 860  QLGGSSVEVGSSVKGLVLDLSDG--VVNLSLKPELIGSVRNV-----GKKKKRQRAAVAD 912

Query: 843  LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 902
            L +H+ VNA+VEI+K +YLVLS+PEYN++IG+A + DYN+Q  P   + NGQ +   V  
Sbjct: 913  LELHEEVNAVVEIIKGSYLVLSIPEYNYAIGFAPLMDYNSQLLPHHHYDNGQRITVVVGN 972

Query: 903  LPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIG 961
            +PSS ++GRL+LL KA ++ +  S SKRAKKKS Y +GSLV+AEI +IKPLEL L+FG  
Sbjct: 973  IPSSDSSGRLILLPKASAQYSALSESKRAKKKSGYKIGSLVEAEIIDIKPLELLLQFGGN 1032

Query: 962  FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK--KSFLWELSIKPSM 1019
             HGRIHITEV +  S+  E+ FS  +IGQ +TARI+A++ +P  K  K+F WELSI+P +
Sbjct: 1033 LHGRIHITEVPEKDSD--EHPFSKLRIGQKLTARIVAEA-EPSGKSGKNFKWELSIRPCI 1089

Query: 1020 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1079
            +   E       +E   +  + V  YV KVD EW  LT+SR++ A LF+LDS+ EPSEL+
Sbjct: 1090 VN-GEFDELTAQKEQKHTTNEIVRAYVVKVDKEWVWLTVSRNVMAHLFVLDSSSEPSELK 1148

Query: 1080 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD-ISNDNMQTF--IHEGD 1136
            EFQ+RF  G+AV G V+++N+EK+LLRL  +   +  +   +D I       F    +GD
Sbjct: 1149 EFQQRFSEGQAVKGRVINVNREKRLLRL--KALDNQCTQLNIDEIQQSKSSVFEQTKQGD 1206

Query: 1137 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1196
            I+GGR+ KIL GVGGLVVQIGPHL GRVH+TE+ +  V++PLSG+ EGQ           
Sbjct: 1207 IIGGRVQKILPGVGGLVVQIGPHLRGRVHYTEIVDSWVTEPLSGFHEGQ----------- 1255

Query: 1197 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1256
            FVKCKVL +SR+  G+  V+LSLRSS + +  +N+S L  D+ T    +EKI+DL P   
Sbjct: 1256 FVKCKVLSVSRSSEGSLRVDLSLRSS-NLIRDSNNSGLVDDLATCTSRIEKIKDLLPGTE 1314

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            ++GYVKNV SKGCFIM+SR ++A++ LSNLSD YVE+P+K+FP+G LV GRVLS +P S 
Sbjct: 1315 IKGYVKNVNSKGCFIMISRMVEARITLSNLSDEYVENPQKDFPVGMLVHGRVLSTDPSSG 1374

Query: 1317 RVEVTL-KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            RVE +L KT+ S+     +I+  S+LHVGDI+ GQ+KRVES+GLF+TI  + LVGLCHVS
Sbjct: 1375 RVEASLRKTTGSKLEKLDDIS-YSDLHVGDIIDGQVKRVESFGLFVTIRRSELVGLCHVS 1433

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
            ELS++ V +I + Y+AG+ VK KILK+D+++ R+SLGMK SYF  D+D    ++++E DE
Sbjct: 1434 ELSDEPVVDINSCYKAGDMVKAKILKIDEKRHRVSLGMKKSYF--DSDLTADTNDDEDDE 1491

Query: 1436 AIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDM 1494
                       S L + SVA Q ++  +    SLV  + E  ASVPPL+V+LD+ E  D+
Sbjct: 1492 -----------SALMDISVAPQMVEYHNR---SLVNRKAEPIASVPPLQVSLDESECSDL 1537

Query: 1495 -DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERL 1553
             DN  ++     +  +   +KN++  KK+ +++RE EI A EER L+ D P+TPD+FE+L
Sbjct: 1538 EDNNNNKGPEIANGTEANAKKNDKQLKKEARKQRELEISAMEERALQGDVPQTPDDFEKL 1597

Query: 1554 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1613
            VRSSPNSSFVWIKYMA +L +ADVEKAR++AERAL+TI  REE EKLN+WVAYFNLENEY
Sbjct: 1598 VRSSPNSSFVWIKYMATLLDLADVEKARAVAERALKTIIPREEEEKLNVWVAYFNLENEY 1657

Query: 1614 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1673
            G+P E+AV KVFQRALQYCDPKK+HLALL +YERTEQ +LADELL +M K+FK SCK+WL
Sbjct: 1658 GSPREDAVKKVFQRALQYCDPKKLHLALLAMYERTEQYELADELLDRMTKRFKTSCKIWL 1717

Query: 1674 RRVQRLLKQQQE--GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1731
             R+Q  LKQ ++   ++++V RALLSLP  K IKF+SQTAILEFK GV + GRS FE IL
Sbjct: 1718 CRIQFALKQGKDVACIKSIVNRALLSLPHRKRIKFLSQTAILEFKCGVPEEGRSRFELIL 1777

Query: 1732 SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1791
             EYPKRTDLWS+YLDQEIRLGD+++IR LFER   L+LPPKKM+FLFKKYL +EKS+GE+
Sbjct: 1778 REYPKRTDLWSVYLDQEIRLGDIEVIRALFERVTCLTLPPKKMQFLFKKYLNFEKSLGED 1837

Query: 1792 -ERIEYVKQKAMEYVESTL 1809
             ERI++V+QKA+EYV+S+L
Sbjct: 1838 NERIQFVQQKAIEYVQSSL 1856


>gi|218199275|gb|EEC81702.1| hypothetical protein OsI_25303 [Oryza sativa Indica Group]
          Length = 1848

 Score = 1870 bits (4843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 991/1817 (54%), Positives = 1300/1817 (71%), Gaps = 113/1817 (6%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            +NIS  MKLWGVV EVN+KD+V+ LPGG+RG  R+ +  D       + +E ++   + H
Sbjct: 135  KNISPNMKLWGVVIEVNQKDIVVSLPGGMRGFVRSEEVHDITSQETRKDSEGSICADVVH 194

Query: 64   VGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 121
            VGQLV CIVL++DDD KE GK  +++WLSLRLS +YKGLSL+ +Q+GMVLTA VKSIEDH
Sbjct: 195  VGQLVPCIVLRVDDDNKE-GKVNKRVWLSLRLSRIYKGLSLDAIQDGMVLTAQVKSIEDH 253

Query: 122  GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 181
            GYILHFG+ SF+GF+P+   A+     ++ G L+Q VV++ID+ R++V+LSSD D +SK 
Sbjct: 254  GYILHFGVSSFSGFMPK---ADRESAKIESGQLIQCVVKAIDKAREIVHLSSDEDLLSKS 310

Query: 182  VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 241
            + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFLTYFTGT DIF+L N+FP+ +WK+D
Sbjct: 311  IIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFLTYFTGTADIFNLSNSFPSGSWKDD 370

Query: 242  YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 301
            Y ++KKVNARILFVDP++RAVGLTLN  LL  + P  +VK G+IYD+++V+R+D+  GL 
Sbjct: 371  YIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPSINVKAGEIYDKARVLRMDKRAGLF 430

Query: 302  LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 361
            L+IPS P  +P +V+I DV++++V+ +EKK+KEGS  RVR+LG RHLEG+A G LK SAF
Sbjct: 431  LEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSMARVRVLGVRHLEGVAIGTLKESAF 489

Query: 362  EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-IVKPGKKFKV 420
            EG VFTH+DVKPGMVV+ KV+ V+ FGAIVQF  GVKALCPLPHMSE E +VKP KKFKV
Sbjct: 490  EGSVFTHADVKPGMVVRAKVVTVEPFGAIVQFSSGVKALCPLPHMSELEHVVKPPKKFKV 549

Query: 421  GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 480
            G EL FRVLG KSKRITVT KK+LVKSKL +L+SYA+A   L+THGWITKIEKHGCFV+F
Sbjct: 550  GVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYADAKIGLLTHGWITKIEKHGCFVKF 609

Query: 481  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
            YNGVQGF  RSELGL+PG E  ++YHVGQVVKCR++S +PASR+IN++F++   RV + D
Sbjct: 610  YNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVVSVVPASRKINVTFLISTNRVIQAD 669

Query: 541  LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 600
              K+GS+VSGVV+ +TP AVVV V   G+ KG+I  EHLADH                  
Sbjct: 670  TPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILNEHLADHR----------------- 710

Query: 601  QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
                 D E  NL+LSAK SLIN A  +PS+ S +H  SV HGYVCNIIE GCFVRFLG L
Sbjct: 711  -----DVEGQNLVLSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGCFVRFLGHL 765

Query: 661  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            TGF+P+ KAVD     LS  +YVGQSVRS+IL+VN+E+ R+ LSL+QS CSS D SF+Q 
Sbjct: 766  TGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNAESARVKLSLQQSMCSSADCSFVQG 825

Query: 721  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 780
            +FLL++KI  L+ S  + S   W+  F IG+++EG+V    ++GV+++F+ H DV G I 
Sbjct: 826  YFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGEVGAIEEYGVILNFQSHPDVVGLIE 885

Query: 781  HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 840
            HHQL  ++VE GS ++  ++D++    +V++SLK+  +      + ++  +KKKR R A 
Sbjct: 886  HHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSELV-----RSVSKVGKKKKRHRAAV 938

Query: 841  KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATV 900
             DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A + DYN+Q  P   + NGQ +   V
Sbjct: 939  MDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAPLMDYNSQLLPCCNYENGQRITVVV 998

Query: 901  MALPSSSTAGRLLLLLKAISETETSSSKRAKKKS-SYDVGSLVQAEITEIKPLELRLKFG 959
             ++PSS   GRLLLL KA  +  + SS +  KK   + VGSLV+AEI +IKPLEL LKFG
Sbjct: 999  GSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSDFKVGSLVEAEIIDIKPLELLLKFG 1058

Query: 960  IGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPS 1018
               HGRIHITEV DD SN  +  FS  +IG++V ARI+A++       K+  WELSI+PS
Sbjct: 1059 SNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQARIVAEAEHSGKGGKNSKWELSIRPS 1116

Query: 1019 MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1078
            +L            E   SIG  V  YV KVD EW  LT+SR + A LFILDS+ EP EL
Sbjct: 1117 LLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWIWLTVSRDVMAHLFILDSSAEPGEL 1176

Query: 1079 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RPFQDGISDKTVDISNDNMQTFIHEG 1135
            ++FQ+R+ +G+AV G ++ +N+EK+LLRL     +   + I +    +S     T   +G
Sbjct: 1177 EKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQSLPENIGETQKPLSATVEHT--KQG 1234

Query: 1136 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1195
            DI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +  V +P+SG+ EGQ          
Sbjct: 1235 DIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVDSWVQEPISGFHEGQ---------- 1284

Query: 1196 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
             FVKCKVL++SR+  G+  V+LSLRSS+   +S  S  L  D        EKI DL P  
Sbjct: 1285 -FVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQSRRLFDDSRIRTSRFEKINDLCPGT 1342

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
             V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YVE+P+ +FP+G LV GRVLS EP S
Sbjct: 1343 EVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQNDFPVGLLVHGRVLSSEPQS 1402

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             +VEV+L+ +    + +S+  + S+LHVGDI+ GQ+KRVES+GLF+TI+ + LV LCHVS
Sbjct: 1403 GKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVTIQGSELVALCHVS 1462

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
            ELS++ V +I + ++AG+K+       D+E+ R+S+GMK SY   D+     +S++E DE
Sbjct: 1463 ELSDEPVLDIHSCHKAGDKI-------DEERHRVSIGMKKSYIGPDSTG--DTSDDEDDE 1513

Query: 1436 AIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD 1495
             + E  S N                M  +   +LVL + ESRASV PL+V+LD+ +    
Sbjct: 1514 IVPEEISRNPV--------------MGRDRNHALVLPKPESRASVLPLQVSLDESEGSDQ 1559

Query: 1496 NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVR 1555
               ++ Q   + A+  D+K+N+  K+K +++RE EI A EER L++D P+TPDEFE+LVR
Sbjct: 1560 ENDNKGQEIANGAEVDDKKSNKRLKEKARKQRELEISALEERALQRDIPQTPDEFEKLVR 1619

Query: 1556 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1615
            SSPNSSFVWI YMAF+L +ADV+KAR++AERAL+TINIREE EKLN+WVAYFNLENEYG+
Sbjct: 1620 SSPNSSFVWINYMAFLLDLADVDKARAVAERALRTINIREEEEKLNVWVAYFNLENEYGS 1679

Query: 1616 PPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR 1675
            P E+AV K+FQRALQYCDPKKVHLALL +YERTEQ  LADELL +M K+FK SCK+WLR 
Sbjct: 1680 PREDAVKKIFQRALQYCDPKKVHLALLAMYERTEQYTLADELLDRMTKRFKTSCKIWLRC 1739

Query: 1676 VQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE 1733
            +Q  LKQ +  E ++ +V+RALLSLP+ K IKF+SQTAILEFK GV + GRS FE IL E
Sbjct: 1740 IQLSLKQSKDVECIKLIVKRALLSLPQSKRIKFLSQTAILEFKCGVPEEGRSRFELILRE 1799

Query: 1734 YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1793
            YPKRTDLWS+YLDQ                            FLFKKYLEYEKS G+EER
Sbjct: 1800 YPKRTDLWSVYLDQ----------------------------FLFKKYLEYEKSQGDEER 1831

Query: 1794 IEYVKQKAMEYVESTLA 1810
            IE+VKQKA+EYV+S+LA
Sbjct: 1832 IEHVKQKALEYVQSSLA 1848


>gi|357124172|ref|XP_003563778.1| PREDICTED: protein RRP5 homolog [Brachypodium distachyon]
          Length = 1668

 Score = 1802 bits (4668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 940/1714 (54%), Positives = 1236/1714 (72%), Gaps = 101/1714 (5%)

Query: 110  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 169
            VLTA VKS+EDHGYIL+FG+ +F+GF+P+    +   + ++ G L+Q VV++ID+ R ++
Sbjct: 43   VLTAQVKSVEDHGYILYFGVSTFSGFMPK---CDKETVKIESGQLVQCVVKAIDKARAII 99

Query: 170  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 229
            +LS D D +SK + KDLKG+SID L+PGMM++ RV ++LENGVMLSFLTYFTGT DIF+L
Sbjct: 100  HLSCDEDLLSKSIIKDLKGLSIDHLIPGMMMNARVHTVLENGVMLSFLTYFTGTADIFNL 159

Query: 230  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 289
             N+FP+ NWK+DY+++KKVNARILFVDP++RAVGLTLN +LL    PP +VKVG+IY++S
Sbjct: 160  SNSFPSGNWKDDYSKNKKVNARILFVDPSTRAVGLTLNQHLLRFEVPPVNVKVGEIYERS 219

Query: 290  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 349
            +V+R+D+  GL L+IPS P  +P +V+I DV++++V+K+EKK+KEGS  RVR+LG RHLE
Sbjct: 220  RVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKKVEKKFKEGSITRVRVLGVRHLE 278

Query: 350  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
            G+A G LK SAFEG VFTH+DVKPGMV                F GGVKALCPL HMSE 
Sbjct: 279  GVALGTLKDSAFEGSVFTHADVKPGMV----------------FAGGVKALCPLRHMSEL 322

Query: 410  E-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
            + +VKP KKFKVGAEL+FRVLG KSKRITVT+KK+LVKSKL +L+SYA+A   L+THGWI
Sbjct: 323  DNVVKPPKKFKVGAELLFRVLGCKSKRITVTYKKSLVKSKLEVLASYADAKIGLVTHGWI 382

Query: 469  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
            TKIEKHGCFVRFYNGV+GF  RSELGL+PG E  S+YHVGQVVKCRI+S +PAS ++N+S
Sbjct: 383  TKIEKHGCFVRFYNGVKGFVSRSELGLEPGTEAGSVYHVGQVVKCRIVSVVPASMKLNVS 442

Query: 529  FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 588
            F     R+ + D  K+G++VS VV+ +TP AVVV V   G+SKG+I  EHLADH      
Sbjct: 443  FATSSNRIIQADTAKVGTIVSAVVERLTPAAVVVSV--NGFSKGSILDEHLADHH----- 495

Query: 589  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 648
                             D E  NL+LSAK SLINSA  +PS+ S +   +VVHGY+CNII
Sbjct: 496  -----------------DTEGQNLILSAKQSLINSANDIPSEISQMQAGAVVHGYICNII 538

Query: 649  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            E GCFVRFLG LTGF+P+ KAVD     LS  ++VGQSVRS+IL+VN+E+ R+ LSL+QS
Sbjct: 539  EAGCFVRFLGHLTGFSPKDKAVDIPMEKLSAAFFVGQSVRSHILNVNAESARLKLSLQQS 598

Query: 709  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 768
             CSS D SFMQ +FLL++KIA ++ S  + S   W +   IGS+++G+V    ++GV+++
Sbjct: 599  VCSSPDCSFMQGYFLLDQKIAEMKYSGSSTSH-DWKKSLGIGSLVKGEVGAVEEYGVILN 657

Query: 769  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            F++H DV G I HHQL G+TV+ GS ++  I+D++    +V+LSLK   I      + + 
Sbjct: 658  FKDHPDVVGLIEHHQLGGSTVKVGSSVKGLIVDLSDG--VVNLSLKPELI-----GSVSM 710

Query: 829  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQK 888
              +KKKR R A  DL +H+ VNA+VEIVKE+Y+VLS+PEYNH+IG+A + DYN+Q  P  
Sbjct: 711  DGKKKKRHRAAVLDLELHEEVNAVVEIVKESYVVLSVPEYNHAIGFAPLMDYNSQLLPHH 770

Query: 889  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 948
             + NGQ +   V ++PSS  +GRL+LL K   +    SS R  KK S  VGSLV+AE+ +
Sbjct: 771  HYDNGQRITVVVGSIPSSDPSGRLILLPKTSGQGSGLSSSRKAKKLSDKVGSLVEAEVID 830

Query: 949  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS-NKPDMKK 1007
            IKPLEL +KFG+  HGRIHITEV +D  +  E+ FS  +IGQ + AR++A++ +  +  +
Sbjct: 831  IKPLELIVKFGVNHHGRIHITEVLEDDCS--EHPFSKLRIGQKIHARVVAQAEHSANSGR 888

Query: 1008 SFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1067
               WELSI+PS+L         L  + + S+   V  YV KVD EW  LT+SR++ A LF
Sbjct: 889  KLKWELSIRPSVLQGESKQLNALENKSNHSVNGIVRAYVVKVDREWVWLTVSRNVTAHLF 948

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
            ILDS+ EP EL+EFQ+R+ +G+AV G+++ +N+EKKLLRL  +   +    K +D +   
Sbjct: 949  ILDSSVEPIELKEFQQRYRVGQAVKGYIIGVNREKKLLRL--KALDNQAMLKNIDDTQKP 1006

Query: 1128 MQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1184
            + +      EGDI+GGRI KIL GVGGL++QIGPHL+GRVH+TE+ +  V +PLSG+ EG
Sbjct: 1007 ISSIAEHTKEGDIIGGRIQKILPGVGGLLIQIGPHLHGRVHYTEIVDSWVPEPLSGFHEG 1066

Query: 1185 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1244
                       QFVKCKVL +SR   G+  VELSLRSS+   S   S  L  D  T    
Sbjct: 1067 -----------QFVKCKVLAVSRPSEGSVRVELSLRSSILCTSHDPSRKLVDDSATCTTR 1115

Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
             E + DLSP   V+GYVKNV +KGCFIMLSR ++A+++LSNLSD YVE+P+K+F +G LV
Sbjct: 1116 FENVNDLSPGSEVKGYVKNVNAKGCFIMLSRMIEARIILSNLSDEYVENPQKDFSVGMLV 1175

Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
             GRVLS EPLS +VEV+L+      + +S+  + S+LHVGDI+ GQ+KRVESYGLF+TI+
Sbjct: 1176 HGRVLSAEPLSGKVEVSLRKGTGSKSQKSDGISYSDLHVGDIIDGQVKRVESYGLFVTIQ 1235

Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN---D 1421
            ++ LVGLCHVSELS++ V +I + Y+AG+ VK KILK+D+E+RR+SLGMK SYF +   D
Sbjct: 1236 SSELVGLCHVSELSDEPVLDINSCYKAGDMVKAKILKIDEERRRVSLGMKKSYFVSGLTD 1295

Query: 1422 ADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVP 1481
              N     +E     I  V                   +M S+   +LV+ + E RASV 
Sbjct: 1296 GINDDDDDDERVPMDINHVP------------------EMSSDLNSALVVPEPEPRASVL 1337

Query: 1482 PLEVNLDD-EQPDMDNGISQNQGH--TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERL 1538
            PL+V+LD+ E  D D   S ++G    +   +I +K+++  K+K +++RE +I A EER 
Sbjct: 1338 PLQVSLDEYEGSDQD---SDDKGPKIANGTGSIVQKSDKRLKEKARKQRELDISALEERA 1394

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L+KD P+TPDEFE+LVRSSPNSSFVWI YMAF+L +ADVEKARS+AERAL+TIN+REE E
Sbjct: 1395 LQKDIPKTPDEFEKLVRSSPNSSFVWINYMAFLLDLADVEKARSVAERALRTINMREEEE 1454

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLN+WVAYFNLENEYG P E+AV K+FQRA+QYCDPKKVHLALLG+YERT+Q++LADEL 
Sbjct: 1455 KLNVWVAYFNLENEYGCPREDAVKKIFQRAMQYCDPKKVHLALLGMYERTDQHELADELF 1514

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1716
             +M K+FK SCK+WLRR+Q  LKQ +  E +++++ RALLSLP+ K IKF+SQTAILEFK
Sbjct: 1515 DRMTKRFKTSCKIWLRRIQFSLKQGRDVEYIKSIINRALLSLPQSKRIKFLSQTAILEFK 1574

Query: 1717 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1776
             GV + GRS FE IL EYPKRTDLWS+YLDQEIRLGD D+IR LF+R   LSLPPKKMKF
Sbjct: 1575 CGVPEEGRSRFELILREYPKRTDLWSVYLDQEIRLGDTDVIRALFDRVTCLSLPPKKMKF 1634

Query: 1777 LFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            LFKKYL YEKS G+ ER+E V QKA EY + + A
Sbjct: 1635 LFKKYLAYEKSQGDRERMELVMQKATEYAKISQA 1668



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 39/168 (23%)

Query: 10  MKLWGVVAEVNEKDLVICLPGGLRGLARAADALD-------PILDNEIEANEDNLLPTIF 62
           MKLWGVV EVN+KD+++ LPGG+RG  R  +  D        +L  ++++ ED+     F
Sbjct: 1   MKLWGVVIEVNQKDVIVSLPGGMRGFVRKDEVSDLALHGNHKVLTAQVKSVEDHGYILYF 60

Query: 63  HV-------------------GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL------- 96
            V                   GQLV C+V  +D       +  I LS    LL       
Sbjct: 61  GVSTFSGFMPKCDKETVKIESGQLVQCVVKAIDK-----ARAIIHLSCDEDLLSKSIIKD 115

Query: 97  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 144
            KGLS++ +  GM++ A V ++ ++G +L F L  FTG     NL+ +
Sbjct: 116 LKGLSIDHLIPGMMMNARVHTVLENGVMLSF-LTYFTGTADIFNLSNS 162


>gi|33235571|dbj|BAC79783.2| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group]
 gi|50508626|dbj|BAD31015.1| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group]
          Length = 1668

 Score = 1795 bits (4649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 948/1709 (55%), Positives = 1235/1709 (72%), Gaps = 91/1709 (5%)

Query: 110  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 169
            VLTA VKSIEDHGYILHFG+ SF+GF+P+   A+     ++ G L+Q VV++ID+ R++V
Sbjct: 43   VLTAQVKSIEDHGYILHFGVSSFSGFMPK---ADRESAKIESGQLIQCVVKAIDKAREIV 99

Query: 170  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 229
            +LSSD D +SK + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFLTYFTGT DIF+L
Sbjct: 100  HLSSDEDLLSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFLTYFTGTADIFNL 159

Query: 230  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 289
             N+FP+ +WK+DY ++KKVNARILFVDP++RAVGLTLN  LL  + P  +VK G+IYD++
Sbjct: 160  SNSFPSGSWKDDYIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPSINVKAGEIYDKA 219

Query: 290  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 349
            +V+R+D+  GL L+IPS P  +P +V+I DV++++V+ +EKK+KEGS  RVR+LG RHLE
Sbjct: 220  RVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSMARVRVLGVRHLE 278

Query: 350  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
            G+A G LK SAFEG VFTH+DVKPGMV                F  GVKALCPLPHMSE 
Sbjct: 279  GVAIGTLKESAFEGSVFTHADVKPGMV----------------FSSGVKALCPLPHMSEL 322

Query: 410  E-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
            E +VKP KKFKVG EL FRVLG KSKRITVT KK+LVKSKL +L+SYA+A   L+THGWI
Sbjct: 323  EHVVKPPKKFKVGVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYADAKIGLLTHGWI 382

Query: 469  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
            TKIEKHGCFV+FYNGVQGF  RSELGL+PG E  ++YHVGQVVKCR++S +PASR+IN++
Sbjct: 383  TKIEKHGCFVKFYNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVVSVVPASRKINVT 442

Query: 529  FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 588
            F++   RV + D  K+GS+VSGVV+ +TP AVVV V   G+ KG+I  EHLADH      
Sbjct: 443  FLISTNRVIQADTPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILNEHLADHR----- 495

Query: 589  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 648
                             D E  NL+LSAK SLIN A  +PS+ S +H  SV HGYVCNII
Sbjct: 496  -----------------DVEGQNLVLSAKQSLINCASDIPSEISQMHAGSVFHGYVCNII 538

Query: 649  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            E GCFVRFLG LTGF+P+ KAVD     LS  +YVGQSVRS+IL+VN+E+ R+ LSL+QS
Sbjct: 539  EAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNAESARVKLSLQQS 598

Query: 709  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 768
             CSS D SF+Q +FLL++KI  L+ S  + S   W+  F IG+++EG+V    ++GV+++
Sbjct: 599  MCSSADCSFVQGYFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGEVGAIEEYGVILN 658

Query: 769  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            F+ H DV G I HHQL  ++VE GS ++  ++D++    +V++SLK+  +      + ++
Sbjct: 659  FQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSELV-----RSVSK 711

Query: 829  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQK 888
              +KKKR R A  DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A + DYN+Q  P  
Sbjct: 712  VGKKKKRHRAAVMDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAPLMDYNSQLLPCC 771

Query: 889  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS-SYDVGSLVQAEIT 947
             + NGQ +   V ++PSS   GRLLLL KA  +  + SS +  KK   + VGSLV+AEI 
Sbjct: 772  NYENGQRITVVVGSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSDFKVGSLVEAEII 831

Query: 948  EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK- 1006
            +IKPLEL LKFG   HGRIHITEV DD SN  +  FS  +IG++V ARI+A++       
Sbjct: 832  DIKPLELLLKFGSNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQARIVAEAEHSGKGG 889

Query: 1007 KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1066
            K+  WELSI+PS+L            E   SIG  V  YV KVD EW  LT+SR + A L
Sbjct: 890  KNSKWELSIRPSLLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWIWLTVSRDVMAHL 949

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RPFQDGISDKTVDI 1123
            FILDS+ EP EL++FQ+R+ +G+AV G ++ +N+EK+LLRL     +   + I +    +
Sbjct: 950  FILDSSAEPGELEKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQSLPENIGETQKPL 1009

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            S     T   +GDI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +  V +P+SG+ E
Sbjct: 1010 SATVEHT--KQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVDSWVQEPISGFHE 1067

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
            GQ           FVKCKVL++SR+  G+  V+LSLRSS+   +S  S  L  D      
Sbjct: 1068 GQ-----------FVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQSRRLFDDSRIRTS 1115

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
              EKI DL P   V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YVE+P+ +FP+G L
Sbjct: 1116 RFEKINDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQNDFPVGLL 1175

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            V GRVLS EP S +VEV+L+ +    + +S+  + S+LHVGDI+ GQ+KRVES+GLF+TI
Sbjct: 1176 VHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVTI 1235

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
            + + LV LCHVSELS++ V +I + ++AG+KVK KILK+D+E+ R+S+GMK SY   D+ 
Sbjct: 1236 QGSELVALCHVSELSDEPVLDIHSCHKAGDKVKAKILKIDEERHRVSIGMKKSYIGPDST 1295

Query: 1424 NLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPL 1483
                +S++E DE + E  S N                M  +   +LVL + ESRASV PL
Sbjct: 1296 G--DTSDDEDDEIVPEEISRNPV--------------MGRDRNHALVLPKPESRASVLPL 1339

Query: 1484 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA 1543
            +V+LD+ +       ++ Q   +  +  D+K+N+  K+K +++RE EI A EER L++D 
Sbjct: 1340 QVSLDESEGSDQENDNKGQEIANGTEVDDKKSNKRLKEKARKQRELEISALEERALQRDI 1399

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P+TPDEFE+LVRSSPNSSFVWI YMAF+L +ADV+KAR++AERAL+TINIREE EKLN+W
Sbjct: 1400 PQTPDEFEKLVRSSPNSSFVWINYMAFLLDLADVDKARAVAERALRTINIREEEEKLNVW 1459

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            VAYFNLENEYG+P E+AV K+FQRALQYCDPKKVHLALL +YERTEQ  LADELL +M K
Sbjct: 1460 VAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLAMYERTEQYTLADELLDRMTK 1519

Query: 1664 KFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            +FK SCK+WLR +Q  LKQ +  E ++ +V+RALLSLP+ K  KF+SQTAILEFK GV +
Sbjct: 1520 RFKTSCKIWLRCIQLSLKQSKDVECIKLIVKRALLSLPQSKRRKFLSQTAILEFKCGVPE 1579

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
             GRS FE IL EYPKRTDLWS+YLDQEIRLGD ++IR LFER   LSLPPKKMKFLFKKY
Sbjct: 1580 EGRSRFELILREYPKRTDLWSVYLDQEIRLGDTEIIRALFERVTCLSLPPKKMKFLFKKY 1639

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            LEYEKS G+EERIE+VKQKA+EYV+S+LA
Sbjct: 1640 LEYEKSQGDEERIEHVKQKALEYVQSSLA 1668



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 29/161 (18%)

Query: 10  MKLWGVVAEVNEKDLVICLPGGLRGLARAADALD-------PILDNEIEANEDNLLPTIF 62
           MKLWGVV EVN+KD+V+ LPGG+RG  R+ +  D        +L  ++++ ED+     F
Sbjct: 1   MKLWGVVIEVNQKDIVVSLPGGMRGFVRSEEVHDITSQETRKVLTAQVKSIEDHGYILHF 60

Query: 63  HV-------------------GQLVSCIVLQLDDDKK--EIGKRKIWLSLRLSLLYKGLS 101
            V                   GQL+ C+V  +D  ++   +   +  LS  +    KGLS
Sbjct: 61  GVSSFSGFMPKADRESAKIESGQLIQCVVKAIDKAREIVHLSSDEDLLSKSIIKDLKGLS 120

Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA 142
           ++ +  GM++ A V S+ ++G +L F L  FTG     NL+
Sbjct: 121 IDHLIPGMMVNARVHSVLENGVMLSF-LTYFTGTADIFNLS 160


>gi|255581558|ref|XP_002531584.1| programmed cell death protein, putative [Ricinus communis]
 gi|223528780|gb|EEF30787.1| programmed cell death protein, putative [Ricinus communis]
          Length = 1330

 Score = 1769 bits (4583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 916/1365 (67%), Positives = 1086/1365 (79%), Gaps = 90/1365 (6%)

Query: 490  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 549
            RSELG++PG + SSMYHVGQVVKCR++SS+PASRRINLSF MKPTRV +++ +KLGS+V+
Sbjct: 12   RSELGIEPGNDASSMYHVGQVVKCRVLSSLPASRRINLSFTMKPTRVPKEEALKLGSVVA 71

Query: 550  GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 609
            GVV+ VT NAV+VYV +KGY++G I TEHLAD  E A + KSV+KPGYEFDQLLVLD E+
Sbjct: 72   GVVEKVTSNAVIVYVNSKGYTRGIISTEHLADRHEQAALFKSVLKPGYEFDQLLVLDIEN 131

Query: 610  SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
            +NL+LSAKYSL+NSA QLPSD + IHP S+VHGY+CN+I+TGCFVRFLGRLTGF+P+SKA
Sbjct: 132  NNLVLSAKYSLVNSAHQLPSDLTEIHPQSIVHGYICNLIDTGCFVRFLGRLTGFSPKSKA 191

Query: 670  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 729
            +D Q+A LS+ +Y+GQSVRSNI+DV+SET RIT+SLKQS CSSTDASF+QE+FL+EEK+A
Sbjct: 192  MDNQKAQLSEAFYIGQSVRSNIIDVSSETNRITVSLKQSSCSSTDASFLQEYFLVEEKVA 251

Query: 730  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 789
             LQSS   G +LKWVEGF IG+V+E KV ES + G+VVSF++++DV GFITH+QL G TV
Sbjct: 252  ELQSSDSKGPDLKWVEGFNIGTVVEAKVEESKEVGIVVSFDKYNDVLGFITHYQLGGTTV 311

Query: 790  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 849
            E+GS I+AA+LDVAK E LVDLSLK  F+D+  +  SN Q  KKKRKRE  K+L V+Q+V
Sbjct: 312  ETGSTIRAAVLDVAKTEHLVDLSLKPEFLDKCTDEKSNSQTHKKKRKREVLKNLEVYQSV 371

Query: 850  NAIVEIVKENYL----------------------------VLSLPEYNHSIGYASVSDYN 881
             A+VEIVKENY+                            VLS+PE+N+ IGYASVSDYN
Sbjct: 372  TAVVEIVKENYMASALFFPLDDRCCTNSNVSSCSSVPLKQVLSIPEHNYIIGYASVSDYN 431

Query: 882  TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDVGS 940
             QK PQKQFLNGQSV+ATVMALPSSSTAGRLLLLLK+ISE TETSS+K+AKKKSSY +GS
Sbjct: 432  IQKLPQKQFLNGQSVVATVMALPSSSTAGRLLLLLKSISEITETSSTKKAKKKSSYKIGS 491

Query: 941  LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1000
            LVQA                         EVNDD    +E+ F++FKIGQTVTARI+AK+
Sbjct: 492  LVQA-------------------------EVNDD--CFLEDPFTSFKIGQTVTARIVAKT 524

Query: 1001 NKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1059
            +K D  K+ LWELSIKP +LT   E   KL+ +E + S G R+TGYVYKVD+EWA LTIS
Sbjct: 525  SKAD--KNQLWELSIKPKVLTDFWESEDKLMSKEFEFSSGHRITGYVYKVDSEWAWLTIS 582

Query: 1060 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD----- 1114
            RHLKAQLFILDSA EPSELQEFQ+RF +GKAV+G+VLS NKEK LLRLV RP        
Sbjct: 583  RHLKAQLFILDSACEPSELQEFQKRFFVGKAVSGYVLSYNKEKTLLRLVQRPLCAVSCIH 642

Query: 1115 ------GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1168
                    +D   ++  DN   +I EGDIVGG+ISKILSGVGG++VQIGPH++G+VH+TE
Sbjct: 643  VNGEALNKNDAQNEVRRDNAAAYIQEGDIVGGKISKILSGVGGVLVQIGPHVHGKVHYTE 702

Query: 1169 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1228
            L+   V +P           L GY EGQFVKCKVLEISR+ +GT H++LSLR SLDGM S
Sbjct: 703  LQESWVPNP-----------LDGYREGQFVKCKVLEISRSDKGTTHIDLSLRFSLDGMLS 751

Query: 1229 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1288
             NSS+LS + D   + +EKI+DL PN +VQGYVKNV  KGCFI LSRK+DAK+LLSNLSD
Sbjct: 752  QNSSELSKNAD---QRVEKIDDLQPNTVVQGYVKNVAPKGCFIFLSRKIDAKILLSNLSD 808

Query: 1289 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1348
             +V SPE+EFPIGKLV GRVLSVEPLSKRVEVTLK  ++++  +SE+N+LS L+VGD   
Sbjct: 809  EFVVSPEEEFPIGKLVTGRVLSVEPLSKRVEVTLK-KNAKSTGKSELNDLSRLNVGDTAS 867

Query: 1349 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1408
            G+IKRVE YGLFI I++TNLVGLCHVSELS+DHVD++ET YRAGEKV  +ILKVD E+RR
Sbjct: 868  GRIKRVEPYGLFIAIDHTNLVGLCHVSELSDDHVDSVETKYRAGEKVTARILKVDVERRR 927

Query: 1409 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN--RSSLLENSSVAVQDMDMESEDG 1466
            ISLG+K+    ND D L   S+EES +AI E G+ +   S    +SS A++ MD+ESE+ 
Sbjct: 928  ISLGIKNLDNGNDTDIL--PSQEESSDAISENGTTDDGDSKPHYSSSPAIEGMDIESENE 985

Query: 1467 GSLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKE 1525
               VLA  ESRAS+PPL V LDD E  D+D+ ISQ Q   D+ K  DEK+ R AKKK KE
Sbjct: 986  EHAVLAHAESRASIPPLNVTLDDVEHSDVDDTISQTQEQIDKTKIADEKDTRQAKKKVKE 1045

Query: 1526 EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1585
            EREQEIRAAEERLLEKD PRT DEFE+LV  SPN+SFVWIKYMAFML +AD+EKARSIAE
Sbjct: 1046 EREQEIRAAEERLLEKDIPRTADEFEKLVHGSPNNSFVWIKYMAFMLDLADIEKARSIAE 1105

Query: 1586 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1645
            RAL+TIN REENEKLN+WVAYFNLENEYGNPPEEAV  VFQRALQYCDPKKVHLALLG+Y
Sbjct: 1106 RALRTINFREENEKLNVWVAYFNLENEYGNPPEEAVKNVFQRALQYCDPKKVHLALLGVY 1165

Query: 1646 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIK 1705
            ERTEQ+KLADELL +M+KKFK SCK+WLRRVQR LKQ+Q+GVQ+ V+RALLSLPRHKHIK
Sbjct: 1166 ERTEQHKLADELLDRMVKKFKISCKIWLRRVQRHLKQEQDGVQSTVKRALLSLPRHKHIK 1225

Query: 1706 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765
            FISQ AILEFK GV DRGRSMFEGIL EYPKRTDLWS+YLDQEIRLGDVD+ R LFERA 
Sbjct: 1226 FISQAAILEFKCGVPDRGRSMFEGILREYPKRTDLWSVYLDQEIRLGDVDVTRTLFERAT 1285

Query: 1766 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            SLSLP KKM+FLFKKYLEYEKSVG+EE+IE VK+KAMEYVEST+A
Sbjct: 1286 SLSLPAKKMQFLFKKYLEYEKSVGDEEQIESVKKKAMEYVESTMA 1330



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 15/169 (8%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQF--PGGVKALCPLPHMSEFE--------IVKPGKKFKV 420
           +K G VV G V  V S   IV     G  + +    H+++          ++KPG +F  
Sbjct: 64  LKLGSVVAGVVEKVTSNAVIVYVNSKGYTRGIISTEHLADRHEQAALFKSVLKPGYEFDQ 123

Query: 421 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 480
                  VL +++  + ++ K +LV S   + S   E   + I HG+I  +   GCFVRF
Sbjct: 124 -----LLVLDIENNNLVLSAKYSLVNSAHQLPSDLTEIHPQSIVHGYICNLIDTGCFVRF 178

Query: 481 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
              + GF+P+S+   +   + S  +++GQ V+  I+     + RI +S 
Sbjct: 179 LGRLTGFSPKSKAMDNQKAQLSEAFYIGQSVRSNIIDVSSETNRITVSL 227



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 20/216 (9%)

Query: 332 YKEGSCVRVRILGFRHLEGLATGILKASAF--EGLVFTHS---------------DVKPG 374
           Y+EG  V+ ++L     +   T I  +  F  +G++  +S               D++P 
Sbjct: 715 YREGQFVKCKVLEISRSDKGTTHIDLSLRFSLDGMLSQNSSELSKNADQRVEKIDDLQPN 774

Query: 375 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK-- 432
            VV+G V  V   G  +     + A   L ++S+  +V P ++F +G  +  RVL V+  
Sbjct: 775 TVVQGYVKNVAPKGCFIFLSRKIDAKILLSNLSDEFVVSPEEEFPIGKLVTGRVLSVEPL 834

Query: 433 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF-YNGVQGFAPRS 491
           SKR+ VT KK    +  + L+  +         G I ++E +G F+   +  + G    S
Sbjct: 835 SKRVEVTLKKNAKSTGKSELNDLSRLNVGDTASGRIKRVEPYGLFIAIDHTNLVGLCHVS 894

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
           EL  D      + Y  G+ V  RI+      RRI+L
Sbjct: 895 ELSDDHVDSVETKYRAGEKVTARILKVDVERRRISL 930


>gi|356498361|ref|XP_003518021.1| PREDICTED: protein RRP5 homolog [Glycine max]
          Length = 2174

 Score = 1617 bits (4186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 810/1226 (66%), Positives = 986/1226 (80%), Gaps = 52/1226 (4%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            +NI+ GMKLWGVVAEVNEKDLV+ LPGGLRGL  A+DA+DPI D++IE  E   L  +F 
Sbjct: 262  KNITPGMKLWGVVAEVNEKDLVVSLPGGLRGLVHASDAVDPIFDDKIEVGEI-FLSGVFC 320

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            VGQLVSC+VL+LDDDKKE G RKIWLSLRLSLL+K  +L+ VQEGMVL AYVKSIEDHGY
Sbjct: 321  VGQLVSCVVLRLDDDKKEKGSRKIWLSLRLSLLHKNYNLDVVQEGMVLAAYVKSIEDHGY 380

Query: 124  ILHFGLPSFTGFLPRNNLA-ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 182
            ILHFGLPSF GFLP+N+ A + S   +K G LLQG+VR+ID+ RKVVYLSSDPDT+SK V
Sbjct: 381  ILHFGLPSFLGFLPKNSSAGKKSSNYLKIGKLLQGLVRTIDKVRKVVYLSSDPDTMSKSV 440

Query: 183  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 242
            TKDL+G+SIDLLVPGM+V+ RV+SILENGVMLSFLTYFTGTVD+FHLQN +P TNWK+  
Sbjct: 441  TKDLRGLSIDLLVPGMLVNARVKSILENGVMLSFLTYFTGTVDLFHLQNIYPGTNWKDKC 500

Query: 243  NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL 302
            ++ +KV +RILF+DP+SRAVGLTLNP+L+ NRAPPSHVK+GDIYD SKVVRVDRGLGLLL
Sbjct: 501  SESQKVVSRILFIDPSSRAVGLTLNPHLVQNRAPPSHVKIGDIYDNSKVVRVDRGLGLLL 560

Query: 303  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 362
            ++PS P  TPA+V+               YKEG+ VRVRILG R+LEG+ATG+LKASA E
Sbjct: 561  EVPSIPEPTPAFVS---------------YKEGNRVRVRILGLRYLEGIATGVLKASALE 605

Query: 363  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 422
              VFTHSDVKPGMVVK K+++VDSFGAIVQ PGGVKALCPL HMSE EI KPGKKFKVGA
Sbjct: 606  EEVFTHSDVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEISKPGKKFKVGA 665

Query: 423  ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 482
            ELVFRVLG KSKR+TVTHKKTLVKSKL I+SSYA+ATD LITHGWITKIE HGCFVRFYN
Sbjct: 666  ELVFRVLGCKSKRVTVTHKKTLVKSKLGIISSYADATDGLITHGWITKIEVHGCFVRFYN 725

Query: 483  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 542
            GVQGFAPRSELGL+PG +P ++Y+VGQVVKCR++S IPASRRINL           +D+V
Sbjct: 726  GVQGFAPRSELGLEPGADPGTVYNVGQVVKCRVISCIPASRRINL-----------NDMV 774

Query: 543  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 602
             LGSLVSGVVD +T NAVVVYV A G+S+GTI  EHLADH   A +M S +KPGY FDQL
Sbjct: 775  TLGSLVSGVVDRITSNAVVVYVNASGFSRGTISMEHLADHHGQAILMHSRLKPGYNFDQL 834

Query: 603  LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
            LVLD + +NL+LSAK SLI  AQQ+P+D + IHPNSVVHGY+CN+IE+GCFVRFLG LTG
Sbjct: 835  LVLDVKGNNLILSAKSSLIKHAQQIPADINQIHPNSVVHGYICNLIESGCFVRFLGHLTG 894

Query: 663  FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 722
            FAPR+KA D Q++++ + YY+GQSVRSNI +V+SETGR+TLSLKQ+ CSSTDASF+Q++F
Sbjct: 895  FAPRNKAADDQKSNILEAYYIGQSVRSNISNVSSETGRVTLSLKQTACSSTDASFIQDYF 954

Query: 723  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 782
            L+++KIA LQ      S+ KW EGF IG V +GKV +  D G+ +SFE+H+DV+GFI ++
Sbjct: 955  LMDDKIAKLQYWGSGASDSKWDEGFNIGMVAKGKVKDVEDVGLAISFEKHNDVFGFIANY 1014

Query: 783  QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 842
            QLAG  +ESGSV++A +LDVAKA++LV+L+LK  FI+R +E+ S     KKKR+REASKD
Sbjct: 1015 QLAGTILESGSVVEALVLDVAKADKLVELTLKPEFINRSKES-STSHTNKKKRRREASKD 1073

Query: 843  LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 902
            L +HQTVNA+VEIVKENYLVLS+PE +++IGYASVSDYN Q+FP KQ+ NGQSV+ATVMA
Sbjct: 1074 LVLHQTVNAVVEIVKENYLVLSIPENDYTIGYASVSDYNAQRFPHKQYQNGQSVVATVMA 1133

Query: 903  LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 962
            LPS  T+GRLLLL   ++ T +S   + K      VG+LV+AEIT+IK LEL+LKFG G 
Sbjct: 1134 LPSPETSGRLLLLPNEVNGTSSSKRTKKKSSYK--VGTLVEAEITDIKTLELKLKFGFGL 1191

Query: 963  HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD-MKKSFLWELSIKPSMLT 1021
            HGRIHITEV +   +V+EN FS +K+GQTVTARI+AK N+ D  +K   WELS++  M+T
Sbjct: 1192 HGRIHITEVQN--GSVLENPFSCYKVGQTVTARIVAKPNESDGNRKGSQWELSVRSEMVT 1249

Query: 1022 -VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1080
              S+I    + E  +  IGQ V GYVYKV++EW  LTISR+++AQL+ILDSA EPSEL++
Sbjct: 1250 GSSDIDD--VSENLEFKIGQCVAGYVYKVESEWIWLTISRNVRAQLYILDSAIEPSELED 1307

Query: 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD---GISDKT-VDISNDNMQTFIHEGD 1136
            FQ R+H+G+ V+GHVLS+N EKKLLRLV+RPF     G S++  +++ +  +    HEGD
Sbjct: 1308 FQNRYHVGQPVSGHVLSVNMEKKLLRLVVRPFSTLPCGTSEEPHINVVDKGLTAHFHEGD 1367

Query: 1137 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1196
            I+GGR+SKIL  VGGL+VQ+GP  YG+VHFTEL +  V DPL           SGY EGQ
Sbjct: 1368 ILGGRVSKILPSVGGLLVQVGPRTYGKVHFTELADTLVPDPL-----------SGYHEGQ 1416

Query: 1197 FVKCKVLEISRTVRGTFHVELSLRSS 1222
            FVKC VLE+S TV+GT HV+LSLRSS
Sbjct: 1417 FVKCVVLEVSHTVKGTIHVDLSLRSS 1442



 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/573 (70%), Positives = 474/573 (82%), Gaps = 12/573 (2%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K +EKIEDL P+MIV+GY+KNVT KGCFIMLSRK+DAK+LLSNLS+ YV+  EKEFPIGK
Sbjct: 1609 KCVEKIEDLHPDMIVKGYIKNVTPKGCFIMLSRKIDAKILLSNLSEQYVQELEKEFPIGK 1668

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
            LV GRV+SVEPLS RVEVTLKTS      +SEI +LS  HVGD++ G+IKRVES+GLFI 
Sbjct: 1669 LVIGRVISVEPLSNRVEVTLKTSTDPNIPKSEIIDLSKFHVGDVISGRIKRVESFGLFIA 1728

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
            I+NTN+VGLCHVSE+S++ ++NIE  YRAGE+V  +ILKVD+E+ RISLGMK+SY + D 
Sbjct: 1729 IDNTNMVGLCHVSEISDNRIENIEANYRAGERVNARILKVDEERHRISLGMKNSYMR-DE 1787

Query: 1423 DNLQMSSEEESDEAIEE----VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRA 1478
              LQ+ SEEESDE I +    + S N SSLL  S++     D+E E     +L+Q++ RA
Sbjct: 1788 TMLQIPSEEESDEPITDGMKSITSMN-SSLLGTSNI-----DVEDEINQFPILSQVQQRA 1841

Query: 1479 SVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEER 1537
             +PPL+V LDD +Q D++N  SQ++ H +E   ++EK+ R  KKK KEERE++IRAAEER
Sbjct: 1842 DIPPLDVPLDDFDQFDVNNTNSQSEEHANEEDIVNEKHKRREKKKAKEEREKQIRAAEER 1901

Query: 1538 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1597
            LLE D PRT DEFE+L+RSSPNSSF WIKYM FM+SM DVEKARSIAERAL+TINIREEN
Sbjct: 1902 LLEDDVPRTADEFEKLIRSSPNSSFTWIKYMDFMVSMVDVEKARSIAERALRTINIREEN 1961

Query: 1598 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1657
            EKLNIW AYFNLEN+YGNP EEAV+KVFQRALQY DPKKV+LALLG+YERTEQ+ LADEL
Sbjct: 1962 EKLNIWKAYFNLENKYGNPREEAVMKVFQRALQYNDPKKVYLALLGMYERTEQHNLADEL 2021

Query: 1658 LYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
            L KM KKFKHSCKVWLRR+Q LLKQ Q+G+Q V+ RA LSLP+HKHIKF SQTAILEFK 
Sbjct: 2022 LNKMTKKFKHSCKVWLRRIQSLLKQNQDGIQPVIDRASLSLPKHKHIKFFSQTAILEFKV 2081

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1777
            GV DRGRSMFE IL EYPKRTDLWS+YLDQEI+  D D+IR LFERA+SLSLPPKKMKFL
Sbjct: 2082 GVLDRGRSMFEKILREYPKRTDLWSVYLDQEIQHKDKDIIRALFERAVSLSLPPKKMKFL 2141

Query: 1778 FKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            FKKYL YEKS G+EERIE VK+KAMEYVEST A
Sbjct: 2142 FKKYLYYEKSQGDEERIESVKRKAMEYVESTRA 2174



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 136/589 (23%), Positives = 249/589 (42%), Gaps = 111/589 (18%)

Query: 893  GQSVIATVMALPSSSTAGRLLLLLK--AISETETS--------------------SSKRA 930
            GQSV + +  +  SS  GR+ L LK  A S T+ S                     +  +
Sbjct: 916  GQSVRSNISNV--SSETGRVTLSLKQTACSSTDASFIQDYFLMDDKIAKLQYWGSGASDS 973

Query: 931  KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI-- 988
            K    +++G + + ++ +++ + L + F               +K N V    +N+++  
Sbjct: 974  KWDEGFNIGMVAKGKVKDVEDVGLAISF---------------EKHNDVFGFIANYQLAG 1018

Query: 989  -----GQTVTARI--IAKSNKPDMKKSFLWELSIKPSML------TVSEIGSKLLFEEC- 1034
                 G  V A +  +AK++K       L EL++KP  +      + S    K    E  
Sbjct: 1019 TILESGSVVEALVLDVAKADK-------LVELTLKPEFINRSKESSTSHTNKKKRRREAS 1071

Query: 1035 -DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-QRRFHIGKAVT 1092
             D+ + Q V   V  V   + +L+I  +     +   S Y     Q F  +++  G++V 
Sbjct: 1072 KDLVLHQTVNAVVEIVKENYLVLSIPENDYTIGYASVSDYNA---QRFPHKQYQNGQSVV 1128

Query: 1093 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1152
              V+++   +   RL+L P +    + T        ++    G +V   I+ I +    L
Sbjct: 1129 ATVMALPSPETSGRLLLLPNE---VNGTSSSKRTKKKSSYKVGTLVEAEITDIKTL--EL 1183

Query: 1153 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1212
             ++ G  L+GR+H TE++N  V +          +P S Y  GQ V  +++       G 
Sbjct: 1184 KLKFGFGLHGRIHITEVQNGSVLE----------NPFSCYKVGQTVTARIVAKPNESDGN 1233

Query: 1213 ---FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
                  ELS+RS +   SS        D+D   ++LE          V GYV  V S+  
Sbjct: 1234 RKGSQWELSVRSEMVTGSS--------DIDDVSENLE----FKIGQCVAGYVYKVESEWI 1281

Query: 1270 FIMLSRKLDAK--VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK---T 1324
            ++ +SR + A+  +L S +    +E  +  + +G+ V+G VLSV    K + + ++   T
Sbjct: 1282 WLTISRNVRAQLYILDSAIEPSELEDFQNRYHVGQPVSGHVLSVNMEKKLLRLVVRPFST 1341

Query: 1325 SDSRTASQSEINNL-----SNLHVGDIVIGQIKRV-ESYGLFITIENTNLVGLCHVSELS 1378
                T+ +  IN +     ++ H GDI+ G++ ++  S G  +        G  H +EL+
Sbjct: 1342 LPCGTSEEPHINVVDKGLTAHFHEGDILGGRVSKILPSVGGLLVQVGPRTYGKVHFTELA 1401

Query: 1379 EDHVDNIETIYRAGEKVKVKILKVD---KEKRRISLGMKSSYFKNDADN 1424
            +  V +  + Y  G+ VK  +L+V    K    + L ++SS  K   D+
Sbjct: 1402 DTLVPDPLSGYHEGQFVKCVVLEVSHTVKGTIHVDLSLRSSNVKLSQDS 1450



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            D+ P M+V+  + +V S G  + +   + A   L ++S+  +  P K+F +G  +  RVL
Sbjct: 613  DVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEISKPGKKFKVGAELVFRVL 672

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
              +  SKRV VT K    +T  +S+   I++ ++   G I  G I ++E +G F+   N 
Sbjct: 673  GCK--SKRVTVTHK----KTLVKSKLGIISSYADATDGLITHGWITKIEVHGCFVRFYN- 725

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
             + G    SEL  +   +  T+Y  G+ VK +++      RRI+L
Sbjct: 726  GVQGFAPRSELGLEPGADPGTVYNVGQVVKCRVISCIPASRRINL 770



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 1017 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1076
            P  + V    SK + +  D+     V GY+  V  +   + +SR + A+  IL S     
Sbjct: 1598 PKSIVVRNANSKCVEKIEDLHPDMIVKGYIKNVTPKGCFIMLSRKIDAK--ILLSNLSEQ 1655

Query: 1077 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT--VDISNDNMQTFIHE 1134
             +QE ++ F IGK V G V+S+      + + L+   D    K+  +D+S        H 
Sbjct: 1656 YVQELEKEFPIGKLVIGRVISVEPLSNRVEVTLKTSTDPNIPKSEIIDLSK------FHV 1709

Query: 1135 GDIVGGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
            GD++ GRI ++ S   GL + I   ++ G  H +E+ +  + +  + Y  G+
Sbjct: 1710 GDVISGRIKRVES--FGLFIAIDNTNMVGLCHVSEISDNRIENIEANYRAGE 1759



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 31/192 (16%)

Query: 634  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
            +HP+ +V GY+ N+   GCF+    ++      S   +    +L K + +G+ V   ++ 
Sbjct: 1617 LHPDMIVKGYIKNVTPKGCFIMLSRKIDAKILLSNLSEQYVQELEKEFPIGKLVIGRVIS 1676

Query: 694  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
            V   + R+ ++LK    +STD +  +                   SE+  +  F +G VI
Sbjct: 1677 VEPLSNRVEVTLK----TSTDPNIPK-------------------SEIIDLSKFHVGDVI 1713

Query: 754  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
             G++     FG+ ++  +++++ G     +++   +E       +G  + A IL V +  
Sbjct: 1714 SGRIKRVESFGLFIAI-DNTNMVGLCHVSEISDNRIENIEANYRAGERVNARILKVDEER 1772

Query: 807  RLVDLSLKTVFI 818
              + L +K  ++
Sbjct: 1773 HRISLGMKNSYM 1784



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 12/184 (6%)

Query: 370  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
            D+ P M+VKG +  V   G  +     + A   L ++SE  + +  K+F +G  ++ RV+
Sbjct: 1616 DLHPDMIVKGYIKNVTPKGCFIMLSRKIDAKILLSNLSEQYVQELEKEFPIGKLVIGRVI 1675

Query: 430  GVK--SKRITVTHKKT----LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 482
             V+  S R+ VT K +    + KS++  LS +       +  G I ++E  G F+   N 
Sbjct: 1676 SVEPLSNRVEVTLKTSTDPNIPKSEIIDLSKFHVGD---VISGRIKRVESFGLFIAIDNT 1732

Query: 483  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 542
             + G    SE+  +      + Y  G+ V  RI+       RI+L   MK + + ++ ++
Sbjct: 1733 NMVGLCHVSEISDNRIENIEANYRAGERVNARILKVDEERHRISLG--MKNSYMRDETML 1790

Query: 543  KLGS 546
            ++ S
Sbjct: 1791 QIPS 1794



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 31/195 (15%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            I  + PN +V GY+ N+   GCF+     L      +  +D    +  + + IG+ V   
Sbjct: 863  INQIHPNSVVHGYICNLIESGCFVRFLGHLTGFAPRNKAADDQKSNILEAYYIGQSVRSN 922

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNL-----------------------SNLHVG 1344
            + +V   + RV ++LK +   +   S I +                           ++G
Sbjct: 923  ISNVSSETGRVTLSLKQTACSSTDASFIQDYFLMDDKIAKLQYWGSGASDSKWDEGFNIG 982

Query: 1345 DIVIGQIKRVESYGLFITIENTN-LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1403
             +  G++K VE  GL I+ E  N + G     +L+        TI  +G  V+  +L V 
Sbjct: 983  MVAKGKVKDVEDVGLAISFEKHNDVFGFIANYQLA-------GTILESGSVVEALVLDVA 1035

Query: 1404 KEKRRISLGMKSSYF 1418
            K  + + L +K  + 
Sbjct: 1036 KADKLVELTLKPEFI 1050


>gi|12322020|gb|AAG51058.1|AC069473_20 rRNA biogenesis protein, putative, 3' partial; 75505-85642
            [Arabidopsis thaliana]
          Length = 1396

 Score = 1584 bits (4101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 803/1319 (60%), Positives = 1010/1319 (76%), Gaps = 61/1319 (4%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            +NIS GMKL GVV EVN+KD+VI LPGGLRGL RA++  D   D  IE +E+ LL  IF 
Sbjct: 123  KNISPGMKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSD-FTDRGIEDDENELLGDIFS 181

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            VGQLV CIVL+LDDDKKE GKRKIWLSLRLSLL+KG S ++ Q GMV +A VKSIEDHG 
Sbjct: 182  VGQLVPCIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHGS 241

Query: 124  ILHFGLPSFTGFLP-RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 182
            ILHFGLPS TGF+   ++  + SG+  K G L+QGVV  IDR RK+V+LSSDPD+V+KC+
Sbjct: 242  ILHFGLPSITGFIEISDDGNQESGM--KTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCL 299

Query: 183  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 242
            TKDL G+S DLL+PGMMV+ RVQS+LENG++  FLTYF GTVD+FHL+N     +WK++Y
Sbjct: 300  TKDLSGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEY 359

Query: 243  NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL 302
            NQ+K VNARILF+DP+SRAVGLTL+P+++ N+APP HV  GDI+D++KVVR+D+  GLLL
Sbjct: 360  NQNKTVNARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKS-GLLL 418

Query: 303  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 362
            ++PS P  TPAYV+  D A +EV KLEKK+KEG+ +RVR+LG + +EGLA G LK SAFE
Sbjct: 419  ELPSKPTPTPAYVSTYDAAGDEVTKLEKKFKEGNHIRVRVLGLKQMEGLAVGTLKESAFE 478

Query: 363  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 422
            G VFTHSDVKPGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEFE+ KP KKFKVGA
Sbjct: 479  GPVFTHSDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGA 538

Query: 423  ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 482
            ELVFRVLG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWITKIEKHGCFVRFYN
Sbjct: 539  ELVFRVLGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYN 598

Query: 483  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 542
            GVQGF PR ELGL+PG +P S++HVG+VVKCR+ S++  ++RI LSFM+KP+ VSEDD +
Sbjct: 599  GVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSEDDSI 658

Query: 543  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 602
            KLGS+VSG++D +T  AV+V V +K   KGTI  EHLADH E A ++ S+++PGYE D+L
Sbjct: 659  KLGSIVSGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELDKL 718

Query: 603  LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
            LVLD E +N+ LS+KYSLI  A++LPSD + + PNSVVHGYVCN+IE GCFVRFLGRLTG
Sbjct: 719  LVLDIEGNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGRLTG 778

Query: 663  FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 722
            FAPRSKA+D  +AD+S++++VGQSVR+NI+DVN E  RITLSLKQS C+S DASF+QE+F
Sbjct: 779  FAPRSKAIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYF 838

Query: 723  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 782
            L++EKI+ LQSS    S+  WVE F IGS+I+G + E ND GVVV+F+  ++V GFI  H
Sbjct: 839  LMDEKISDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQH 898

Query: 783  QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 842
             + GAT+  GSV+ A +LD+++AERLVDLSL+   ++   +  SN  + KKKRKR  SK+
Sbjct: 899  HMGGATLVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKE 956

Query: 843  LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 902
            L VHQ V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF  GQSV+A+V A
Sbjct: 957  LEVHQRVSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKA 1016

Query: 903  LPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIG 961
            + +  T+GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AE                
Sbjct: 1017 VQNPLTSGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAE---------------- 1060

Query: 962  FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1021
                     VND  ++  +  F+ F++GQ+++AR++AK    D+KK+ LWELS+KP+ML 
Sbjct: 1061 ---------VND--ASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLK 1109

Query: 1022 -VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1080
              SE       E+ + + GQ V GYVYKVD EW  L +SR++ A++FILD++ +  EL+E
Sbjct: 1110 DSSEFNDTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEE 1169

Query: 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQ 1129
            F+RRF IGKAV+G+VL+ NKEKK LRLV RP         +G   KT      I  D+  
Sbjct: 1170 FERRFPIGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDT 1229

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
             FIHEGDI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ +  V DP           L
Sbjct: 1230 LFIHEGDILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDP-----------L 1278

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEK 1247
             G+ EGQFVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL  + D   K  E+
Sbjct: 1279 DGFREGQFVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFER 1337

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            IEDLSP+M VQGYVKN  SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV G
Sbjct: 1338 IEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTG 1396



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 200/926 (21%), Positives = 365/926 (39%), Gaps = 171/926 (18%)

Query: 551  VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESS 610
            V+ V T  A+V +    G  K   P  H+++     T  +   K G E     VL  +S 
Sbjct: 497  VISVDTFGAIVQF---SGGLKAMCPLRHMSEF--EVTKPRKKFKVGAEL-VFRVLGCKSK 550

Query: 611  NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 670
             + ++ K +L+ S   + S  +      V HG++  I + GCFVRF   + GF PR +  
Sbjct: 551  RITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELG 610

Query: 671  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 730
                +D    ++VG+ V+  +      T RITL            SFM           +
Sbjct: 611  LEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITL------------SFM-----------I 647

Query: 731  LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 790
              SS      +K      +GS++ G +       V+V  +  S V G I+   LA    E
Sbjct: 648  KPSSVSEDDSIK------LGSIVSGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHH-E 700

Query: 791  SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK---KRKREASKDLGVHQ 847
               +I + +    + ++L+ L +         E N+   + K    K   E   D    Q
Sbjct: 701  QAKLIMSLLRPGYELDKLLVLDI---------EGNNMALSSKYSLIKLAEELPSDFNQLQ 751

Query: 848  ---TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDY--NTQKFPQKQFLNGQSVIATV-- 900
                V+  V  + EN   +         G+A  S    + +    + F  GQSV A +  
Sbjct: 752  PNSVVHGYVCNLIENGCFVRF--LGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANIVD 809

Query: 901  ---------MALPSSSTAG-------RLLLLLKAISETETSSSKRAKKK--SSYDVGSLV 942
                     ++L  SS A           L+ + IS+ ++S   ++       + +GSL+
Sbjct: 810  VNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGSLI 869

Query: 943  QAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 1002
            +  I E   L + + F              D+ +NV+  +  +   G T+    +  +  
Sbjct: 870  KGTIQEQNDLGVVVNF--------------DNINNVLGFIPQHHMGGATLVPGSVVNAVV 915

Query: 1003 PDMKKS-FLWELSIKPSMLT-----VSEIGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1054
             D+ ++  L +LS++P +L      VS    K        ++ + QRV+  V  V  +  
Sbjct: 916  LDISRAERLVDLSLRPELLNNLTKEVSNSSKKKRKRGISKELEVHQRVSAVVEIVKEQHL 975

Query: 1055 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1114
            +L+I  H     +   S Y   +L    ++F  G++V   V          + V  P   
Sbjct: 976  VLSIPEHGYTIGYASVSDYNTQKLP--VKQFSTGQSVVASV----------KAVQNPLTS 1023

Query: 1115 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1174
            G     +D  +   +T   +      R  K  S   G VV             E+ +   
Sbjct: 1024 GRLLLLLDSVSGTSETSRSK------RAKKKSSCEVGSVVH-----------AEVNDAST 1066

Query: 1175 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLE--ISRTVRGTFHVELSLRSSLDGMSSTNSS 1232
            SD          +P + +  GQ +  +V+       ++ T   ELS++ ++      +SS
Sbjct: 1067 SD----------EPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAM----LKDSS 1112

Query: 1233 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-- 1290
            + +   DT  +  E++E  +    V GYV  V  +  ++ +SR + A++ + + S     
Sbjct: 1113 EFN---DT--QESEQLE-FAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHE 1166

Query: 1291 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK---------------TSDSRTASQSEI 1335
            +E  E+ FPIGK V+G VL+     K + +  +                +D   +S    
Sbjct: 1167 LEEFERRFPIGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGD 1226

Query: 1336 NNLSNLHVGDIVIGQIKRVES--YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
            ++   +H GDI+ G+I ++     GL + +    + G  H +E+++  V +    +R G+
Sbjct: 1227 DDTLFIHEGDILGGRISKILPGVGGLRVQL-GPYVFGRVHFTEINDSWVPDPLDGFREGQ 1285

Query: 1394 KVKVKILKVDKEKR---RISLGMKSS 1416
             VK K+L++    +   +I L +++S
Sbjct: 1286 FVKCKVLEISSSSKGTWQIELSLRTS 1311



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 13/185 (7%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            D+ P M+ +  V +V + G  +  S  L A   L ++S+  V  P K+F +G  +  RVL
Sbjct: 486  DVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVL 545

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1366
              +  SKR+ VT K    +T  +S++  LS   +   G +  G I ++E +G F+   N 
Sbjct: 546  GCK--SKRITVTYK----KTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYN- 598

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG--MKSSYFKNDADN 1424
             + G     EL  +   + ++++  GE VK ++       +RI+L   +K S    D D+
Sbjct: 599  GVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSED-DS 657

Query: 1425 LQMSS 1429
            +++ S
Sbjct: 658  IKLGS 662



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/212 (19%), Positives = 82/212 (38%), Gaps = 29/212 (13%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L PN +V GYV N+   GCF+    +L      S   D       + F +G+ V   ++ 
Sbjct: 750  LQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANIVD 809

Query: 1311 VEPLSKRVEVTLKTS-----------------------DSRTASQSEINNLSNLHVGDIV 1347
            V     R+ ++LK S                        S   ++S+ + +    +G ++
Sbjct: 810  VNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGSLI 869

Query: 1348 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
             G I+     G+ +  +N N V    +  + + H+     +   G  V   +L + + +R
Sbjct: 870  KGTIQEQNDLGVVVNFDNINNV----LGFIPQHHMGGATLV--PGSVVNAVVLDISRAER 923

Query: 1408 RISLGMKSSYFKNDADNLQMSSEEESDEAIEE 1439
             + L ++     N    +  SS+++    I +
Sbjct: 924  LVDLSLRPELLNNLTKEVSNSSKKKRKRGISK 955



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 25/201 (12%)

Query: 1234 LSTDVDTPGKHLEKIEDLS--------PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1285
            LS+D D+  K L K  DLS        P M+V   V++V   G         +  V L +
Sbjct: 288  LSSDPDSVAKCLTK--DLSGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFH 345

Query: 1286 LSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV- 1343
            L +    +S + E+   K V  R+L ++P S+ V +TL       +     N    LHV 
Sbjct: 346  LKNPLSNKSWKDEYNQNKTVNARILFIDPSSRAVGLTL-------SPHVVCNKAPPLHVF 398

Query: 1344 -GDIVI-GQIKRVESYGLFITIENTNLVGLCHVS--ELSEDHVDNIETIYRAGEKVKVKI 1399
             GDI    ++ R++  GL + + +       +VS  + + D V  +E  ++ G  ++V++
Sbjct: 399  SGDIFDEAKVVRIDKSGLLLELPSKPTPTPAYVSTYDAAGDEVTKLEKKFKEGNHIRVRV 458

Query: 1400 LKVDKEKRRISLG-MKSSYFK 1419
            L + K+   +++G +K S F+
Sbjct: 459  LGL-KQMEGLAVGTLKESAFE 478



 Score = 40.4 bits (93), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 78/372 (20%), Positives = 148/372 (39%), Gaps = 45/372 (12%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF----------EIVKPGK 416
           T  ++ PGM + G V  V+    ++  PGG++ L     +S+F          E++  G 
Sbjct: 121 TTKNISPGMKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSDFTDRGIEDDENELL--GD 178

Query: 417 KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILS---SYAEATDRLITHGWITKIEK 473
            F VG  +   VL +   +     +K  +  +L++L    S+      ++    +  IE 
Sbjct: 179 IFSVGQLVPCIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIED 238

Query: 474 HGCFVRF-YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 532
           HG  + F    + GF   S    D G + S M   GQ+++  +++ I   R+I +     
Sbjct: 239 HGSILHFGLPSITGFIEIS----DDGNQESGM-KTGQLIQG-VVTKIDRDRKI-VHLSSD 291

Query: 533 PTRVSED----------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 582
           P  V++           DL+  G +V+  V  V  N ++   +   Y  GT+   HL + 
Sbjct: 292 PDSVAKCLTKDLSGMSFDLLIPGMMVNARVQSVLENGILFDFLT--YFNGTVDLFHLKNP 349

Query: 583 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS-AKYSLINSAQQLPSDASHIHPNSVV- 640
           L + +      +      ++L +D  S  + L+ + + + N A  L     H+    +  
Sbjct: 350 LSNKSWKDEYNQNKTVNARILFIDPSSRAVGLTLSPHVVCNKAPPL-----HVFSGDIFD 404

Query: 641 HGYVCNIIETGCFVRFLGRLT---GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
              V  I ++G  +    + T    +     A   +   L K +  G  +R  +L +   
Sbjct: 405 EAKVVRIDKSGLLLELPSKPTPTPAYVSTYDAAGDEVTKLEKKFKEGNHIRVRVLGLKQM 464

Query: 698 TGRITLSLKQSC 709
            G    +LK+S 
Sbjct: 465 EGLAVGTLKESA 476


>gi|449519617|ref|XP_004166831.1| PREDICTED: protein RRP5 homolog, partial [Cucumis sativus]
          Length = 1323

 Score = 1512 bits (3915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 810/1343 (60%), Positives = 1003/1343 (74%), Gaps = 72/1343 (5%)

Query: 490  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 549
            R ELG++PG +PSS YH+GQV+KCRI SS  +S+RI+LSF+MKP RVSED  V+LG +V+
Sbjct: 31   RFELGIEPGSDPSSTYHIGQVIKCRITSSTHSSKRISLSFVMKPARVSEDTKVELGCIVT 90

Query: 550  GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 609
            GVVD +T   V +Y+    YS+G I TEHL+DH  HA+ +KSV+KPGY+FDQLLVL  E 
Sbjct: 91   GVVDEITETHVTLYINRTDYSRGRISTEHLSDHQAHASSIKSVLKPGYQFDQLLVLAIEG 150

Query: 610  SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
             +L+LSAK SLI  A  LPSD+SH++P S++HG++CNIIE GCFVRFLGRLTGF+PR+KA
Sbjct: 151  ESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICNIIEAGCFVRFLGRLTGFSPRNKA 210

Query: 670  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 729
            +  Q+ DL +TYY+GQSVRSN++DV+ ETGRITLSLKQS C STDASF+QE F  EEKIA
Sbjct: 211  MQDQKLDLRETYYIGQSVRSNVVDVSGETGRITLSLKQSTCFSTDASFIQEFFSTEEKIA 270

Query: 730  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 789
             LQS      E  W E F IGSV+EG+V E  D GV +SFE++ DV+GFI  H L+G+ V
Sbjct: 271  KLQSL----DESNWAEEFAIGSVVEGEVQEVKDIGVTISFEKYHDVFGFIALHGLSGSIV 326

Query: 790  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 849
            E+GS IQAA+LDV+K ERLVDLSLK   +D+++  +S+RQ  +KKRK EA KDL ++QTV
Sbjct: 327  ETGSTIQAAVLDVSKTERLVDLSLKPELVDKWKGGSSSRQTNRKKRKAEAPKDLEMNQTV 386

Query: 850  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 909
            + +VE VKENYLVLSLPE+ H+IGYAS  DYNTQ+  QK F  GQSV+ATV+ALP  ST 
Sbjct: 387  HTVVEAVKENYLVLSLPEFGHAIGYASTYDYNTQRLHQKHFTVGQSVVATVVALPCPSTF 446

Query: 910  GRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 968
            GRLLLLLK+ISE   T  SKR++K SS +VGSLV AE++                     
Sbjct: 447  GRLLLLLKSISEAIVTPGSKRSRKNSSCEVGSLVHAEVSNTP------------------ 488

Query: 969  TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLT-VSEIG 1026
                D+ S   E  FSNF++GQTV ARI+A++N    K K +LWELS+KP +L   S +G
Sbjct: 489  ----DEAS---EAPFSNFRVGQTVVARIVAEANHSASKVKGYLWELSVKPEVLKDFSAVG 541

Query: 1027 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1086
             +++ E+   SIGQRVT YV  V+ +WA L ++R + AQLFILDS+ EPSELQEF + F+
Sbjct: 542  GEIVNEDLGFSIGQRVTAYVSNVNGDWAWLAVTRRVSAQLFILDSSSEPSELQEFSKHFY 601

Query: 1087 IGKAVTGHVLSINKEKKLLRLVLR---PFQDGISD----KTVDISNDNMQTFI---HEGD 1136
            +GKAV+G++ +I  EKK+LRLVL        G SD    K  ++  D  +  I   +EGD
Sbjct: 602  VGKAVSGYISNIIGEKKILRLVLHHLSAISSGKSDQENSKISNLPTDVCKKVICHLNEGD 661

Query: 1137 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1196
            IVGGRISKIL GVGGL+VQIGPHL+GRVH+TEL +  V DPLSGY E           GQ
Sbjct: 662  IVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPLSGYKE-----------GQ 710

Query: 1197 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1256
            FVKCKV+EI+  V+GT H++LSLRSS   +   N    + +    G+   KIED+  +M 
Sbjct: 711  FVKCKVIEITHAVKGTTHIDLSLRSSAGILCQKNIECSNHENIASGR--VKIEDIHAHME 768

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            VQGYVKN++ KGCFIMLSR L+AK+LLSNLSDGY+++PEKEFP GKLV GR+LSVEPLSK
Sbjct: 769  VQGYVKNISPKGCFIMLSRGLEAKILLSNLSDGYIDNPEKEFPTGKLVRGRILSVEPLSK 828

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
            RVEVTLK+     A +   N+L +   GDI+ G+IKRVES+GLFI+I+NT++VGLCHVSE
Sbjct: 829  RVEVTLKSVTETGALRGSNNDLRSFSAGDIISGRIKRVESFGLFISIDNTDVVGLCHVSE 888

Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +S+D V+++E  Y AG+ VK K+LKVD+++ RI+LGMK SY   +   L  + EEE ++A
Sbjct: 889  VSDDPVESLEFRYHAGDTVKAKVLKVDEKRHRIALGMKRSYI-GERSELCTNMEEEHEDA 947

Query: 1437 IEE---VGSYNRSSLLENSSVAVQDM-----DMESEDGGSLVLAQIESRASVPPLEVNLD 1488
             +    +G    S   ++SS   +DM     ++E E    L LA  ESRA VP LEV LD
Sbjct: 948  ADGDNFIGETRLSMDPDSSSTKFKDMDDDFDNIEPEQ--PLRLA--ESRALVPSLEVTLD 1003

Query: 1489 D-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTP 1547
            D ++ DM    S+N+  T    +  EKN+R  KKK KEERE E+RAAEERLL+ ++P T 
Sbjct: 1004 DIDETDMVTLQSENKELTSGTDS-KEKNDRREKKKAKEEREMEVRAAEERLLQNNSPTTV 1062

Query: 1548 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1607
            DEFE+LVRSSPNSSFVWIKYM F    ADVEKARSIAERAL+TINIREENEKLN+W+AYF
Sbjct: 1063 DEFEKLVRSSPNSSFVWIKYMDFF--KADVEKARSIAERALRTINIREENEKLNVWLAYF 1120

Query: 1608 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1667
            NLENEYGNP E+AV K+FQRALQ  DPKKVHLALLG+YERT Q+ LADELL KMIK+FKH
Sbjct: 1121 NLENEYGNPKEDAVTKIFQRALQCNDPKKVHLALLGMYERTNQDNLADELLDKMIKRFKH 1180

Query: 1668 SCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1727
            SCKVWLRR++ L K++Q  +Q++V RALL LP+ KHIK+ISQTAILEFK GVADRGRSMF
Sbjct: 1181 SCKVWLRRMESLFKKKQVEIQSIVNRALLCLPKRKHIKYISQTAILEFKCGVADRGRSMF 1240

Query: 1728 EGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1787
            EGIL EYPKRTDLWSIYLDQEIRLGD D+IR LFERAISLSL PKKMKFLFKKYLEYEKS
Sbjct: 1241 EGILREYPKRTDLWSIYLDQEIRLGDKDMIRALFERAISLSLAPKKMKFLFKKYLEYEKS 1300

Query: 1788 VGEEERIEYVKQKAMEYVESTLA 1810
            VG+EERIE VKQKA+EYVE+TLA
Sbjct: 1301 VGDEERIESVKQKALEYVENTLA 1323



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 5/119 (4%)

Query: 411 IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 470
           ++KPG +F         VL ++ + + ++ K++L+K    + S  +      I HG+I  
Sbjct: 133 VLKPGYQFDQ-----LLVLAIEGESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICN 187

Query: 471 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           I + GCFVRF   + GF+PR++   D   +    Y++GQ V+  ++     + RI LS 
Sbjct: 188 IIEAGCFVRFLGRLTGFSPRNKAMQDQKLDLRETYYIGQSVRSNVVDVSGETGRITLSL 246



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 121/288 (42%), Gaps = 39/288 (13%)

Query: 279 HVKVGDIYDQSKVVRVDRGLG-LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 337
           H+  GDI    ++ ++  G+G LL+ I         Y  ++D     V      YKEG  
Sbjct: 656 HLNEGDIVG-GRISKILPGVGGLLVQIGPHLFGRVHYTELTDCL---VPDPLSGYKEGQF 711

Query: 338 VRVRILGFRHLEGLATGI---LKASAFEGLVF-------THSDVKPG----------MVV 377
           V+ +++   H     T I   L++SA  G++         H ++  G          M V
Sbjct: 712 VKCKVIEITHAVKGTTHIDLSLRSSA--GILCQKNIECSNHENIASGRVKIEDIHAHMEV 769

Query: 378 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKR 435
           +G V  +   G  +    G++A   L ++S+  I  P K+F  G  +  R+L V+  SKR
Sbjct: 770 QGYVKNISPKGCFIMLSRGLEAKILLSNLSDGYIDNPEKEFPTGKLVRGRILSVEPLSKR 829

Query: 436 ITVTHKKTLVKSKLA----ILSSYAEATDRLITHGWITKIEKHGCFVRFYN-GVQGFAPR 490
           + VT K       L      L S++ A D  I  G I ++E  G F+   N  V G    
Sbjct: 830 VEVTLKSVTETGALRGSNNDLRSFS-AGD--IISGRIKRVESFGLFISIDNTDVVGLCHV 886

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 538
           SE+  DP       YH G  VK +++       RI L   MK + + E
Sbjct: 887 SEVSDDPVESLEFRYHAGDTVKAKVLKVDEKRHRIALG--MKRSYIGE 932


>gi|168031842|ref|XP_001768429.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680354|gb|EDQ66791.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1785

 Score = 1458 bits (3775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 816/1859 (43%), Positives = 1180/1859 (63%), Gaps = 132/1859 (7%)

Query: 10   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 69
            MK+WG VAE+N KD+VI LPGGLRG   A +A      +E+  NE  LL  +F VGQLV+
Sbjct: 1    MKIWGAVAEINNKDMVISLPGGLRGFVLAEEA------SEVFENEVPLLSDLFSVGQLVA 54

Query: 70   CIV--LQLDDDKKEIGK-----------RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
            C V  L+L  +KK  GK           R+I LSL+L  LY GLS+E V EG  LTA V 
Sbjct: 55   CTVRKLELTQEKKGRGKPEKEGKNEKRGRRIELSLKLGYLYDGLSIEAVYEGQALTAVVT 114

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 176
            SIEDHGY+L FG+P+ +GFL   N  + +   ++ G L+QGVV S+D+ R  V L +D  
Sbjct: 115  SIEDHGYLLSFGVPAVSGFLLHRNYLDGTS-KLRTGQLVQGVVISVDKKRGAVGLKADLG 173

Query: 177  TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 236
             +S  + K+  G++++LL PG MV+ RV+S+L+NG++LSFLTYFTGTVDIFHL++  P  
Sbjct: 174  LISSNMVKEFAGLTVELLTPGAMVNARVRSVLKNGLLLSFLTYFTGTVDIFHLEDPLPGA 233

Query: 237  NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDR 296
            +W   Y++++++ ARIL++DP ++ +GLTLNP LL+N  P   V VGD++  + V RVD 
Sbjct: 234  DWNTKYSENQRLKARILYIDPVAKTIGLTLNPQLLNNVLPSMSVDVGDVFKDAIVRRVDA 293

Query: 297  GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 356
             +G+LL++P+       Y  IS V++E + KLEKKY  G  VR R++G R ++ LA   L
Sbjct: 294  TIGMLLELPTKENVVAGY--ISSVSDEHIAKLEKKYTVGKKVRARVIGHRVMDALAIASL 351

Query: 357  KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 416
            K S  + L+ +H+DV+P M V G VIAV+ +GA+VQ   GVKALCPL HMSEF+   P  
Sbjct: 352  KESVVDQLLLSHADVQPAMNVTGTVIAVEPYGALVQLAEGVKALCPLQHMSEFQRSNPSS 411

Query: 417  KFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 474
            KF+VG++L FRVL     +K+IT+THKKTL+ SKL+ + SY  A + L+THG+IT IE  
Sbjct: 412  KFQVGSKLKFRVLSCDHHAKKITLTHKKTLITSKLSPIVSYESAVEGLVTHGFITGIEDI 471

Query: 475  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
            GCFV FYN V+G   +S LG++ G +  +++ VGQ +KCR++ S PA+RR++LSF+   +
Sbjct: 472  GCFVSFYNDVKGLVHKSALGIEAGVKAENVFQVGQSIKCRVLRSDPAARRLSLSFITTSS 531

Query: 535  R------VSEDDLVKLGSLVSGVVDVVTPNAVVVYV-IAKGYSKGTIPTEHLADHLEHAT 587
            R       + D+L+  G +V+G V  V  + ++V V    G  KG +   HL+D L H  
Sbjct: 532  RDDASEGAAGDELI--GKVVAGTVHHVNDSVIIVNVSTPTGLVKGYLTFPHLSDTLGHIE 589

Query: 588  VMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 646
             +KSV K G++FD+LLVLD  +   L++SAK SL+ +A  LPSD S + P SV+ GYV N
Sbjct: 590  QLKSVTKVGFQFDRLLVLDVTDKQKLIVSAKQSLLQAASSLPSDISQLQPQSVIPGYVAN 649

Query: 647  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
            I + GCFVRFLGRLTG A   +  D   +D S  + VGQSVR+ +L+V  +TG+ +L LK
Sbjct: 650  ITDRGCFVRFLGRLTGLASVPQVADEFVSDPSNHFSVGQSVRAQVLEVYHDTGKFSLCLK 709

Query: 707  QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 766
            QS C STD S +Q +FL E+KI          S+L+W +   IG+   G+V E  D+GV+
Sbjct: 710  QSVCFSTDVSLIQGYFLEEDKIV----EASEASDLEWAKTLAIGACTGGEVQEIKDYGVI 765

Query: 767  VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 826
            V    + DV GF+TH+QL G  VE G  +QA +LDV KA+R+VDL+++   + +  + +S
Sbjct: 766  VKLPNYKDVVGFVTHYQL-GTPVEVGDSVQARVLDVVKADRIVDLTVRPELL-QVNKHDS 823

Query: 827  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 886
             ++ +K K++      L +HQ V+A++E+VK+ YLVLSLPE  ++IG+A+  DYN+++  
Sbjct: 824  TKKKEKNKKRSHPVMALELHQKVSAVIELVKDAYLVLSLPEQGNAIGFAAAGDYNSRRQD 883

Query: 887  QKQ-FLNGQSVIATVMALPSSSTAGRLLLLLKAIS---ETETSSSKRAKKKSSYDVGSLV 942
              Q +  GQ V+ATV  L   +   R+LLLL       E +TS++K+ +++    +G++V
Sbjct: 884  SHQRYSPGQRVVATVEHLGDETNGNRMLLLLSNTGDSVEVKTSNTKKPRRELDKLIGAIV 943

Query: 943  QAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK--- 999
             AEI +            GF  +               N  S+F IGQ V  R++ +   
Sbjct: 944  DAEIID------------GFEEK---------------NPLSSFNIGQKVRCRVVQRVRL 976

Query: 1000 SNKPDMK-KSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1057
               P  K ++ + ELS++PS L+  +  GS    EE  +  GQ +T YV +V ++WA L+
Sbjct: 977  QKSPGRKERTSVLELSLRPSQLSGYTRPGSLPSLEE--LVPGQCITAYVQEVKDDWAWLS 1034

Query: 1058 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR------- 1110
            ++ HL+ +LFILDS+ +PSEL++F  RF +G  V+  V S++ EK+ L  + R       
Sbjct: 1035 VAPHLRGRLFILDSSTDPSELEKFAERFTVGTPVSCCVKSVDYEKRTLDFIRRQPPQLQE 1094

Query: 1111 -------PFQDGISDKTVDISNDNMQTF-IHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1162
                   P +D  S       N+  Q F I +GD +GGR+ ++  GVGG+ VQI P  +G
Sbjct: 1095 KSLFDVPPMEDADSSS----ENNTKQVFWIQKGDSLGGRVKQVNPGVGGISVQIAPSSFG 1150

Query: 1163 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1222
            RVH T L            DE + +P S + EGQFV+C VL + +   G   ++L+LR S
Sbjct: 1151 RVHVTHLS-----------DEWKDNPASAFKEGQFVRCVVLGVEKNPNGKTVIDLTLRKS 1199

Query: 1223 LDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1280
            L GM + N  +SD +T           I+ L   +++QG+VK+ + KGCFI L+ ++DA 
Sbjct: 1200 LGGMVAANLQASDSAT-TRCVKFQCRTIKPLC--LVLQGFVKSTSKKGCFISLAPQVDAI 1256

Query: 1281 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI--NNL 1338
            VL  NLS  +V+ P + FP GKL+ GR+++++    RVE++LKTS  +    S +     
Sbjct: 1257 VLTCNLSKAFVKDPAESFPPGKLIKGRIINIDADLGRVEMSLKTSGQKKELTSTLLGRRF 1316

Query: 1339 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1398
             +   G++V G IKR+E +G+F+TIE +++V +CH+SE+++ +  +I+  Y+ G++V+ +
Sbjct: 1317 GDFKEGEVVFGTIKRIEKFGIFVTIEQSSVVTMCHMSEVADHYFKDIDKHYKVGDRVRAR 1376

Query: 1399 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQD 1458
            +LKVD  K+RISLG+K SYF N   ++Q  +EE+  +   E        L+++   + +D
Sbjct: 1377 VLKVDNTKQRISLGLKESYFSNTETHVQPVTEEDDMKVTNE-----EDELVDDCEESEED 1431

Query: 1459 MDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRH 1518
               E     S      E   + PPLEV+L+D      N +  ++   DE     +K N+ 
Sbjct: 1432 DVDEENLEDSKGTPSDEGNLNTPPLEVDLEDT-----NVVDDSEKEEDEESEDAKKLNKR 1486

Query: 1519 AKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADV 1577
            AKK+ K++RE EI AAEER L+ D AP T DEFE LVR+SPNSS VWIKYMAF+L +ADV
Sbjct: 1487 AKKRLKQQREAEISAAEERRLKGDQAPETVDEFEALVRTSPNSSLVWIKYMAFLLQLADV 1546

Query: 1578 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1637
            +KAR+IAERALQTIN REE EKLN+W+AY NLEN YGNPP+EAV+ +F RALQY D KK+
Sbjct: 1547 DKARAIAERALQTINYREEMEKLNVWIAYLNLENVYGNPPKEAVLTLFNRALQYNDQKKL 1606

Query: 1638 HLALLGLYERTEQNK-----LADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVV 1691
            + ALLG+YE   Q K     + D+++  MI+KFK S KVWL+++Q L+++    V    +
Sbjct: 1607 YFALLGIYENPRQPKGPQYDMFDQMMKTMIRKFKSSAKVWLKQIQSLMERGMGDVAHKTL 1666

Query: 1692 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1751
             ++LLSLPR KHIK IS+ A+LE+K+G  +R RS+FEGIL  YPKRTDLWS+YLDQEIR+
Sbjct: 1667 DQSLLSLPRRKHIKVISRAALLEYKSGSVERARSIFEGILRNYPKRTDLWSVYLDQEIRV 1726

Query: 1752 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            G+V +IR +FE+   L LPP+KMKFLFKKYL+YEK+ G+EE+IE+VK+KAMEYV + L 
Sbjct: 1727 GEVPVIRAIFEKVTCLELPPRKMKFLFKKYLDYEKANGDEEQIEHVKRKAMEYVNNKLG 1785


>gi|302780137|ref|XP_002971843.1| hypothetical protein SELMODRAFT_451253 [Selaginella moellendorffii]
 gi|300160142|gb|EFJ26760.1| hypothetical protein SELMODRAFT_451253 [Selaginella moellendorffii]
          Length = 1807

 Score = 1382 bits (3577), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 776/1826 (42%), Positives = 1137/1826 (62%), Gaps = 130/1826 (7%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADAL---DPILDNEIEANEDNLLPT 60
            + + +GM+LWG V+ +N+ DL I LP GL G  +  +A     P L ++ +     LL  
Sbjct: 87   RKLCSGMRLWGAVSGINKTDLSISLPNGLHGFVKVDEAFPEYTPDLSDD-KGKCHLLLEE 145

Query: 61   IFHVGQLVSCIVLQLDDDKKEIGK---RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
            +FHVGQ VSC +L L++ K +  K   R+  LSL      +G++++T+  G ++ + VKS
Sbjct: 146  LFHVGQYVSCTLLNLEETKGDGQKKQPRRAVLSLLPRHFNEGMTMDTIYVGQLMISSVKS 205

Query: 118  IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 177
            IEDHGY+L FGLP  +GFL   +   + G  ++ G ++Q  V +ID+ R V+ L++    
Sbjct: 206  IEDHGYVLSFGLPEMSGFLLHKD---HQGEKLRVGEIMQSCVSAIDKKRGVINLTT---M 259

Query: 178  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 237
                  K+ + +S+  LVPG +V+  VQ+++ NGV+LSFLTYFTG VDIFHLQ+   + +
Sbjct: 260  QLSSAMKEHENLSLGTLVPGALVNGCVQAVMRNGVLLSFLTYFTGIVDIFHLQSVLSSKD 319

Query: 238  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRG 297
            W  DY + K+  ARI+F+D  ++ + L+L  +L+        +  GD+ + +++ RVD  
Sbjct: 320  WAQDYTEGKRFKARIIFIDARTKRIRLSLRSHLVDAEIVVPSLNRGDVIEAARIKRVDPA 379

Query: 298  LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 357
            +GLLL++P+TP     YV  +DV++  V KLEKK+K+G  V+ RI+GFR ++G+AT  LK
Sbjct: 380  IGLLLELPATP-HVAGYVNHADVSDVNVDKLEKKFKDGQRVKARIIGFRLMDGMATLTLK 438

Query: 358  ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
             S  +G+V    D+KPG +V G +  V++ GA+V   GGVK LCP+ HMSE+  +KP  K
Sbjct: 439  ESMVKGVV-NKLDLKPGALVHGVITRVEACGALVSL-GGVKGLCPVQHMSEYNRLKPSSK 496

Query: 418  FKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 475
            F+VG ++ FRVL    + K++++T KK+LV SKL ++++Y +A D L+THGWI  I   G
Sbjct: 497  FEVGKKMKFRVLQYDHEKKKLSLTFKKSLVSSKLPLITAYEDAVDGLVTHGWIQGISNIG 556

Query: 476  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--KP 533
            CF+ FYN V+G   RSELG+ P     + +HVGQVVKCR++ S  + RR++LSF M  +P
Sbjct: 557  CFMEFYNHVKGLVHRSELGIGPDTPIEAAFHVGQVVKCRVLESDLSKRRLSLSFNMSLRP 616

Query: 534  TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI 593
                    VK GS+VS V+  +  + + + V     S  T+  EHL+D   HA  M+S++
Sbjct: 617  G-------VKPGSVVSAVITQMGSSQIELQVNDDIAS--TMSYEHLSDTPVHAEQMRSLL 667

Query: 594  KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            KPG++FD+LLVL  E S L+L+AKYSLI++A+ LPS    + P +V+ GY+  I +  C 
Sbjct: 668  KPGFKFDRLLVLGWEHSKLVLTAKYSLIDAAESLPSSIHQLSPMAVLPGYISVIHDKYCL 727

Query: 654  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
            V FL  +TG  P   A DG   DLS+ ++VGQSVR+ +L+V+SE  +  LSLKQS C ST
Sbjct: 728  VSFLDDVTGLVPIGNASDGYLEDLSQVFFVGQSVRAQVLEVDSENEKFVLSLKQSACFST 787

Query: 714  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 773
            D S +Q +FL EE IA L+  +     L W     IG ++E  V E  D+G++++ ++++
Sbjct: 788  DVSLIQGYFLEEELIAKLKEKEG----LDWGNKLQIGELVEADVQEVKDYGIILNLKDNA 843

Query: 774  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 833
            DV GF TH+Q + + VE G+ ++A ILDV K + +VDLSL+                 K 
Sbjct: 844  DVVGFATHYQ-SDSPVEVGAAVKACILDVVKTDGIVDLSLQK----------------KM 886

Query: 834  KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF-PQKQFLN 892
             + ++    L +HQ V  +VE+VK+ YLVLSLP++ +SIG+AS  DYN +   P   +  
Sbjct: 887  LKFKKTKAVLQLHQRVEVVVELVKDEYLVLSLPKFGNSIGFASTRDYNIRVLRPHDHYSP 946

Query: 893  GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPL 952
            GQ   AT+ +  S S   R LLLL     T  +  K        D+G++++ +I EI  L
Sbjct: 947  GQKFSATIYSFGSESVGERTLLLLADTKPTFFTYVKN-------DIGAIIEGQIQEISSL 999

Query: 953  ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK-------SNKPDM 1005
             + ++ GI   G +HITEV D       N    +  GQTV A+I++K        N P +
Sbjct: 1000 HMIIQAGINLRGNVHITEVVDHYEE--GNPLRKYNAGQTVRAKILSKRKTSRKHGNAPTL 1057

Query: 1006 KKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQ 1065
                  +LS++PS LT ++    ++  E  V+IGQ V GYV +V   WA L +S HL+ +
Sbjct: 1058 ------DLSLRPSELTGNDSARSVITFET-VTIGQTVVGYVQEVKENWAWLVLSPHLRGR 1110

Query: 1066 LFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1125
            LFILDS+ +PSEL+ FQ RF +G A   H+ S+N EKK + L LRP  +           
Sbjct: 1111 LFILDSSDDPSELERFQERFKVGDAFQCHIRSVNHEKKQVDLSLRPKDEDFK-------- 1162

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
                    +GD++GGRI+++  G GGL VQ+G   +GRVH T L +  + DP S + EG+
Sbjct: 1163 --------KGDLLGGRITRVRPGDGGLTVQVGWETFGRVHVTHLGDTWMDDPASLFTEGK 1214

Query: 1186 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS--SDLSTDVDTPGK 1243
            F           V+C+VL++  T++GT  +ELSLR SL G     S  S  + +  +   
Sbjct: 1215 F-----------VRCRVLDLKPTLKGTKALELSLRPSLGGYGGFESLPSYQTLERKSNAC 1263

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
             +  + +L  +M VQG+VK+VT KGCF++LS  +DA++LL NLS  +V++P + FP GKL
Sbjct: 1264 IVNSVSELQQDMQVQGFVKDVTEKGCFVILSPSVDARILLKNLSSSFVQNPAEMFPAGKL 1323

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            V+GR+LSV PLS  VE++L TS        E ++      GDIV G+I+ +E++G+F+ +
Sbjct: 1324 VSGRILSVRPLSGHVEMSLTTS-------QESSSWKTFCAGDIVSGRIRSIEAFGMFVAL 1376

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
             ++++VGLCHVSE+S+D + ++ T+Y+ G++V+VKILKVD E +RISLGMK+S+   D D
Sbjct: 1377 ADSDVVGLCHVSEVSDDFIQDLPTLYKVGQRVQVKILKVDAETKRISLGMKASFLTPD-D 1435

Query: 1424 NLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPL 1483
             L+   EE      EE  + N           + + D + ED   L          V PL
Sbjct: 1436 GLETMDEEP---VAEEPSTAN----------VLMETDEKEEDYLDLDTEATPMATDVDPL 1482

Query: 1484 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD- 1542
            EVNL++   D+++ +         A+   +K  +  KK+ KE+RE  +RAAEE+ L+KD 
Sbjct: 1483 EVNLEE---DVEDKVPVEDEKPPTAEES-KKKTKKEKKRLKEQREAAVRAAEEKFLQKDQ 1538

Query: 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1602
             P T D+FERLV +SPNSS+VWIKYMA+ L +AD +KAR++A+RAL+TIN REE EK+NI
Sbjct: 1539 PPETEDDFERLVAASPNSSYVWIKYMAYWLRLADPDKARAVADRALETINYREEMEKMNI 1598

Query: 1603 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1662
            W AY NLEN Y   P EAV  +F+RA++YCDPKK+HL+LLG+YE T Q+++ D L+  M 
Sbjct: 1599 WTAYINLENSYAPSPREAVSALFERAMKYCDPKKLHLSLLGVYESTNQHEMTDALMKSMT 1658

Query: 1663 KKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            +KFK S KVWLR V  LL +   +  +   ++A ++LPRHKHIKFIS+ AILEFK+G  +
Sbjct: 1659 RKFKTSTKVWLRHVSNLLGRGLSDKARKAFEQACVALPRHKHIKFISRAAILEFKSGSPE 1718

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            R R +F+G+L  YPK+TDLWS+YLDQEIRLGD  ++R LFERA  L LP KKMKFLFKKY
Sbjct: 1719 RAREIFDGVLRNYPKKTDLWSVYLDQEIRLGDTAIVRNLFERATCLDLPAKKMKFLFKKY 1778

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVES 1807
            L++EK  G+E RIE+VK KAME+VE+
Sbjct: 1779 LDFEKGQGDETRIEHVKTKAMEFVEA 1804


>gi|6671953|gb|AAF23213.1|AC016795_26 putative pre-rRNA processing protein, 5' partial [Arabidopsis
            thaliana]
          Length = 1111

 Score = 1305 bits (3378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/1160 (60%), Positives = 877/1160 (75%), Gaps = 67/1160 (5%)

Query: 669  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 728
            A+D  +AD+S++++VGQSVR+NI+DVN E  RITLSLKQS C+S DASF+QE+FL++EKI
Sbjct: 1    AIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKI 60

Query: 729  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 788
            + LQSS    S+  WVE F IGS+I+G + E ND GVVV+F+  ++V GFI  H + GAT
Sbjct: 61   SDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGAT 120

Query: 789  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 848
            +  GSV+ A +LD+++AERLVDLSL+   ++   +  SN  + KKKRKR  SK+L VHQ 
Sbjct: 121  LVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQR 178

Query: 849  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 908
            V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF  GQSV+A+V A+ +  T
Sbjct: 179  VSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLT 238

Query: 909  AGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 967
            +GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AE                      
Sbjct: 239  SGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAE---------------------- 276

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIG 1026
               VND  ++  +  F+ F++GQ+++AR++AK    D+KK+ LWELS+KP+ML   SE  
Sbjct: 277  ---VND--ASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFN 331

Query: 1027 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1086
                 E+ + + GQ V GYVYKVD EW  L +SR++ A++FILD++ +  EL+EF+RRF 
Sbjct: 332  DTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFP 391

Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQTFIHEG 1135
            IGKAV+G+VL+ NKEKK LRLV RP         +G   KT      I  D+   FIHEG
Sbjct: 392  IGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEG 451

Query: 1136 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1195
            DI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ +  V DPL G+ EGQ          
Sbjct: 452  DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQ---------- 501

Query: 1196 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSP 1253
             FVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL  + D   K  E+IEDLSP
Sbjct: 502  -FVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSP 559

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
            +M VQGYVKN  SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEP
Sbjct: 560  DMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEP 619

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
            LSKR+EVTLKT ++    +SE  +L  LHVGD++ G+I+RVE +GLFI I+ T +VGLCH
Sbjct: 620  LSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCH 679

Query: 1374 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEE 1432
            +S+LS+D ++N++  Y+AGE V+ KILK+D+EK+RISLGMKSSY  N D D  Q  SE+ 
Sbjct: 680  ISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDN 739

Query: 1433 SDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG-SLVLAQIESRASVPPLEVNLDD-E 1490
            +    + +    +S +L     AV D   +   GG SLVLAQ+ESRAS+PPLEV+LDD E
Sbjct: 740  TSMECDPIND-PKSEVL----AAVDDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIE 794

Query: 1491 QPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEF 1550
            + D D+  SQNQ     A   DEK+ R  K+K+KEERE++I+AAE RLLE  AP   DEF
Sbjct: 795  ETDFDS--SQNQEKLLGANK-DEKSKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEF 851

Query: 1551 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1610
            E+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAERAL+TINIREE EKLNIWVAYFNLE
Sbjct: 852  EKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNLE 911

Query: 1611 NEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK 1670
            NE+GNPPEE+V KVF+RA QYCDPKKV+LALLG+YERTEQ KLAD+LL +MIKKFK SCK
Sbjct: 912  NEHGNPPEESVKKVFERARQYCDPKKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCK 971

Query: 1671 VWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1730
            +WLR++Q  LKQ +E +Q+VV RALL LPRHKHIKFISQTAILEFK GVADRGRS+FEG+
Sbjct: 972  IWLRKIQSSLKQNEEAIQSVVNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGV 1031

Query: 1731 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1790
            L EYPKRTDLWS+YLDQEIRLG+ D+IR LFERAISLSLPPKKMKFLFKK+LEYEKSVG+
Sbjct: 1032 LREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGD 1091

Query: 1791 EERIEYVKQKAMEYVESTLA 1810
            EER+EYVKQ+AMEY  STLA
Sbjct: 1092 EERVEYVKQRAMEYANSTLA 1111



 Score = 47.0 bits (110), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 23/189 (12%)

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           D+ P M V+G V    S G  +     V+A   L ++ +  + +P K+F VG  +  RVL
Sbjct: 556 DLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVL 615

Query: 430 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITH------GWITKIEKHGCFVRF- 480
            V+  SKRI VT K      +       +E+ D    H      G I ++E  G F+   
Sbjct: 616 NVEPLSKRIEVTLKTVNAGGR-----PKSESYDLKKLHVGDMISGRIRRVEPFGLFIDID 670

Query: 481 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL----SFMM----- 531
             G+ G    S+L  D      + Y  G+ V+ +I+      +RI+L    S++M     
Sbjct: 671 QTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDD 730

Query: 532 KPTRVSEDD 540
           K   +SED+
Sbjct: 731 KAQPLSEDN 739



 Score = 44.3 bits (103), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 191 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 250
           I+ L P M V   V++ +  G  +         V + +L +TF     + ++   K V  
Sbjct: 554 IEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTF-VKEPEKEFPVGKLVTG 612

Query: 251 RILFVDPTSRAVGLTLNPYLLHNRAPPSH------VKVGDIYDQSKVVRVDRGLGLLLDI 304
           R+L V+P S+ + +TL       R P S       + VGD+    ++ RV+   GL +DI
Sbjct: 613 RVLNVEPLSKRIEVTLKTVNAGGR-PKSESYDLKKLHVGDMI-SGRIRRVE-PFGLFIDI 669

Query: 305 PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL 343
             T +    +  IS ++++ +  ++ +YK G  VR +IL
Sbjct: 670 DQTGMVGLCH--ISQLSDDRMENVQARYKAGESVRAKIL 706


>gi|302781194|ref|XP_002972371.1| hypothetical protein SELMODRAFT_451250 [Selaginella moellendorffii]
 gi|300159838|gb|EFJ26457.1| hypothetical protein SELMODRAFT_451250 [Selaginella moellendorffii]
          Length = 1634

 Score = 1268 bits (3282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 747/1824 (40%), Positives = 1078/1824 (59%), Gaps = 219/1824 (12%)

Query: 10   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 69
            M+LWG V+ +N+ DL I LP GL G  +  +A         E   D              
Sbjct: 1    MRLWGAVSGINKTDLSISLPNGLHGFVKIDEAFP-------EYTPD-------------- 39

Query: 70   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 129
                 L DDK                              ++ + VKSIEDHGY+L FGL
Sbjct: 40   -----LSDDK------------------------------LMISSVKSIEDHGYVLSFGL 64

Query: 130  PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 189
            P  +GFL   +   + G  ++ G ++Q  V +ID+ R V+ L++          K+ + +
Sbjct: 65   PEMSGFLLHKD---HQGEKLRVGEIMQSCVSAIDKKRGVINLTT---MQLSSAMKEHENL 118

Query: 190  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 249
            S+  LVPG +V+  VQ++L NGV+LSFLTYFTG VDIFHLQ+   + +W  DY + K+  
Sbjct: 119  SLGTLVPGALVNGCVQAVLRNGVLLSFLTYFTGIVDIFHLQSVLSSKDWAQDYTEGKRFK 178

Query: 250  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 309
            ARI+F+D  ++ + L+L  +L+   A    +  GD+ + +++ RVD  +GLLL++P+TP 
Sbjct: 179  ARIIFIDARTKRIRLSLRSHLVD--AEIVSLNRGDVIEAARIKRVDPAIGLLLELPATP- 235

Query: 310  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 369
                YV  +DV++ +V KLEKK+K+G  VR RI+GFR ++ +AT  LK            
Sbjct: 236  HVAGYVNHADVSDVKVDKLEKKFKDGQRVRARIIGFRLMDRMATLTLK------------ 283

Query: 370  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
               PG +V G +  V++ GA+V   GGVK LCP+ HMSE+  +KP  KF+VG ++ FRVL
Sbjct: 284  ---PGALVHGVITRVEACGALVSL-GGVKGLCPVQHMSEYNRLKPSSKFEVGKKMKFRVL 339

Query: 430  GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
                + K++++T KK+LV SKL ++++Y +A D L+THGWI  I   GCF+ FYN V+G 
Sbjct: 340  QYDHEKKKLSLTFKKSLVSSKLPLITAYEDAVDGLVTHGWIQGISNIGCFMEFYNHVKGL 399

Query: 488  APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 547
              RSELG+ P     + +HVGQVVKCR++ S  + RR+ LSF M   R +    VK GS+
Sbjct: 400  VHRSELGIGPDTPIEAAFHVGQVVKCRVLESDLSKRRLRLSFNMS-LRYN----VKPGSV 454

Query: 548  VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN 607
            VS V+  +  + + + V     S  T+  EHL+D             PG           
Sbjct: 455  VSAVITQMGSSQIELQVNDDIAS--TMSYEHLSD------------TPG----------Q 490

Query: 608  ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 667
            E S L+L+AKYSLI++A+ LPS    + P +V+ GY+  I +  C V FL  +TG  P  
Sbjct: 491  EHSKLVLTAKYSLIDAAESLPSSIHQLSPMAVLPGYISVIHDKYCLVSFLDNVTGLVPIG 550

Query: 668  KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 727
             A DG   DLS+ ++VGQSVR+ +L+V+SE  +  LSLKQS C STD S +Q +FL EE 
Sbjct: 551  NASDGYLEDLSQVFFVGQSVRAQVLEVDSENEKFVLSLKQSACFSTDVSLIQGYFLEEEL 610

Query: 728  IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA 787
            IA L+  +     L W     IG ++E  V E  D+G++++ ++++DV GF TH+Q + +
Sbjct: 611  IAKLKEKEG----LDWGNKLQIGELVEADVQEVKDYGIILNLKDNADVVGFATHYQ-SNS 665

Query: 788  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVH 846
             VE G+ ++A ILDV K + +VDLSL                 QK+  K + +K  L +H
Sbjct: 666  PVEVGAAVKACILDVVKTDGIVDLSL-----------------QKRMLKFKKTKAVLQLH 708

Query: 847  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF-PQKQFLNGQSVIATVMALPS 905
            Q V  +VE+VK+ YLVLSLP++ +SIG+AS  DYN +   P   +  GQ   AT+ +  S
Sbjct: 709  QRVEVVVELVKDEYLVLSLPKFENSIGFASTRDYNIRVLRPHDHYSPGQKFSATIYSFGS 768

Query: 906  SSTAGRLLLLLKAISETETSSSKR-----AKKKSSYDV-GSLVQA-----EITEIKPLEL 954
             S   R LLLL     T  +  K       ++   +++ GS +       +I EI  L +
Sbjct: 769  ESVGERTLLLLADTKPTFFTYVKNDIGANHRRPGLFNLSGSFILILTILYQIQEISSLHM 828

Query: 955  RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK-------SNKPDMKK 1007
             ++ GI   G +HITEV D       N    +  GQTV A+I++K        N P +  
Sbjct: 829  IIQAGISLRGNVHITEVVDQYEE--GNPLRKYNAGQTVRAKILSKRKTSRKHGNAPTL-- 884

Query: 1008 SFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1067
                +LS++PS LT ++    ++  E  V+IGQ V GYV +V   WA L +S HL+ +LF
Sbjct: 885  ----DLSLRPSELTGNDSARSVITFET-VTIGQTVVGYVQEVKESWAWLVLSPHLRGRLF 939

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
            ILDS+ +PSEL+ FQ RF +G A   H+ S+N EKK + L LRP  +             
Sbjct: 940  ILDSSDDPSELERFQERFKVGDAFQCHIRSVNHEKKQVDLSLRPKDEDFK---------- 989

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
                  +GD++GGRI+++  G GGL VQ+G   +GRVH T L +  + DP S + EG+F 
Sbjct: 990  ------KGDLLGGRITRVRPGDGGLTVQVGWETFGRVHVTHLGDTWMDDPASLFTEGKF- 1042

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS--SDLSTDVDTPGKHL 1245
                      V+C+VL++  T++GT  +ELSLR SL G     S  S  + +  +    +
Sbjct: 1043 ----------VRCRVLDLKPTLKGTKSLELSLRPSLGGHGGFESLPSYQTLERKSNACIV 1092

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
              + +L  +M VQG+VK++T KGCF++LS  +DA++LL NLS  +V++P + FP GKLV+
Sbjct: 1093 NSVSELQQDMQVQGFVKDLTEKGCFVILSPSVDARILLKNLSSSFVQNPAEMFPAGKLVS 1152

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
            GR+LSV PLS  VE++L TS        E ++      GDIV G+I+ +E++G+F+ + +
Sbjct: 1153 GRILSVRPLSGHVEMSLTTS-------QESSSWKTFCAGDIVSGRIRSIEAFGMFVALAD 1205

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
            ++ VGLCHVSE+S+D + ++ T+Y+ G++V+VKILKVD E +RISLGMK+SY   D D L
Sbjct: 1206 SDGVGLCHVSEVSDDFIQDLPTLYKVGQRVQVKILKVDAETKRISLGMKASYLTPD-DGL 1264

Query: 1426 QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV 1485
            +   EE      EE  + N           + + D + ED   L          V PLEV
Sbjct: 1265 ETMDEEP---VAEEPSTAN----------VLMETDEKEEDYLDLDTEATPMATDVDPLEV 1311

Query: 1486 NLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-AP 1544
            NL++   D+++ +         A+   +K  +  KK+ KE+RE  +RAAEE+ L+KD  P
Sbjct: 1312 NLEE---DVEDKVPVEDEKPLTAEES-KKKTKKEKKRLKEQREAAVRAAEEKFLQKDQPP 1367

Query: 1545 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1604
             T D+FERLV +SPNSS+VWIKYMA+ L +AD +KAR++A+RAL+TIN REE EK+NIW 
Sbjct: 1368 ETEDDFERLVAASPNSSYVWIKYMAYWLRLADPDKARAVADRALETINYREEMEKMNIWT 1427

Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1664
            AY NLEN Y   P EAV  +F+RA++YCDPKK+HL+LLG+YE T Q+++ D L+  M +K
Sbjct: 1428 AYINLENSYAPSPREAVSALFERAMKYCDPKKLHLSLLGVYESTNQHEMTDALMKSMTRK 1487

Query: 1665 FKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1723
            FK S KVWLR V  LL +   +  +   ++A ++LPRHKHIKFIS+ AILEFK+G  +R 
Sbjct: 1488 FKTSTKVWLRHVSNLLGRGLSDKARKAFEQACVALPRHKHIKFISRAAILEFKSGSPERA 1547

Query: 1724 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1783
            R +F+G+L  YPK+TDLWS+YLDQEIRLGD  ++R LFERA  L LP KKMKFLFKKYL+
Sbjct: 1548 REIFDGVLRNYPKKTDLWSVYLDQEIRLGDTAIVRNLFERATCLDLPAKKMKFLFKKYLD 1607

Query: 1784 YEKSVGEEERIEYVKQKAMEYVES 1807
            +EK  G+E RIE+VK KAME+VE+
Sbjct: 1608 FEKGQGDETRIEHVKTKAMEFVEA 1631


>gi|414883924|tpg|DAA59938.1| TPA: hypothetical protein ZEAMMB73_957052, partial [Zea mays]
          Length = 1207

 Score = 1187 bits (3070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1024 (58%), Positives = 783/1024 (76%), Gaps = 29/1024 (2%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            +NIS  MKLWGVV EVN+KD+V+ LPGG+RG  R+ D  D  L    + + +NL   + H
Sbjct: 192  KNISPNMKLWGVVIEVNQKDIVLSLPGGIRGFVRSEDVCDIALQENRKDSGNNLCAEVVH 251

Query: 64   VGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 121
            VGQLV CIVL++DDD +E GK  +++WLSLRLSLLYKGL+L+ +QEGMVLTA VKSIEDH
Sbjct: 252  VGQLVPCIVLRVDDDSRE-GKVNKRVWLSLRLSLLYKGLALDGLQEGMVLTAQVKSIEDH 310

Query: 122  GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 181
            GYILHFG+ SF+GF+ +++  +   +  +   L+Q VV++ID+TR +V+LSSD D +SK 
Sbjct: 311  GYILHFGVSSFSGFMQKDDKED---VKTERRQLMQCVVKAIDKTRAIVHLSSDEDLLSKS 367

Query: 182  VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 241
              KDLKG+SID L+PGMMV+ RV S LENG+MLSFLTYF+GTVDIF+L N+FP+ NWK+D
Sbjct: 368  TIKDLKGLSIDHLIPGMMVNARVHSFLENGLMLSFLTYFSGTVDIFNLLNSFPSGNWKDD 427

Query: 242  YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 301
            Y+++KKVNARILFVDP++RAVGLTLN +LLH   PP ++K GDIYD+SKV+RVD+  GL 
Sbjct: 428  YSKNKKVNARILFVDPSTRAVGLTLNKHLLHLEVPPINLKAGDIYDKSKVLRVDKKAGLF 487

Query: 302  LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 361
            L+IPS P  +P +++I DV++++ + LEK +KEGS +RVRILG R+LEG+A G +K SAF
Sbjct: 488  LEIPS-PTPSPGFISIRDVSDKDAKNLEK-FKEGSSLRVRILGVRNLEGVAIGTIKDSAF 545

Query: 362  EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-IVKPGKKFKV 420
            EG VFTH DVKPGM+V+ KV  V+ FGAIVQF  GVKALCPLPHMSE E +VKP KKFKV
Sbjct: 546  EGSVFTHDDVKPGMLVRAKVATVEPFGAIVQFSSGVKALCPLPHMSELEHVVKPPKKFKV 605

Query: 421  GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 480
            GAEL+FRVLG KSKR+TVT+KK+LVKSKL +LSSYA+A   L+THGWIT IEKHGCFV+F
Sbjct: 606  GAELLFRVLGCKSKRVTVTYKKSLVKSKLDVLSSYADAKIGLVTHGWITHIEKHGCFVKF 665

Query: 481  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
            YNGVQGF  RS+LGL+ G E  ++YHVGQVVKCRI++ IPASR++N+SF++   R++  D
Sbjct: 666  YNGVQGFVSRSDLGLEAGTEAENVYHVGQVVKCRIINVIPASRKLNVSFVISHNRIAPID 725

Query: 541  LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 600
              KLGS+VSGVV+ +TP AVVV V   G+SKGTI  EHLADH   A  +K+V+KPG+EF+
Sbjct: 726  TPKLGSIVSGVVERLTPAAVVVSV--NGFSKGTILNEHLADHHGQAAQLKNVLKPGHEFN 783

Query: 601  QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
            QLLVLD E  NL+LSAK+SLIN A  +PS+ S +HP  VVHGY+CNIIE GCFVRFLG L
Sbjct: 784  QLLVLDTEGQNLVLSAKHSLINCANDIPSEISQMHPGVVVHGYICNIIEAGCFVRFLGHL 843

Query: 661  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            TGF+P+ KAVD     LS  +YVGQSVRS+IL VN+ET R+ L+L+QS CSS D+SF+Q 
Sbjct: 844  TGFSPKDKAVDRWIEKLSDAFYVGQSVRSHILSVNAETARVKLALQQSMCSSMDSSFIQG 903

Query: 721  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 780
            +FLL++KIA L+ S ++     W   F IGS++E +V    ++G++++F++H D  G I 
Sbjct: 904  YFLLDQKIAALKYSSND-----WARHFGIGSLVEAEVGAIEEYGIILNFKDHLDTVGLIE 958

Query: 781  HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 840
            HHQL G++VE GS ++  +LD++    +V+LS+K   ID  R        +KKKR+R   
Sbjct: 959  HHQLGGSSVEVGSSVKGLVLDLSDG--VVNLSVKPELIDSVRIV-----GKKKKRQRAVV 1011

Query: 841  KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATV 900
             DL +H+ VNA+VEI+K++Y+VLS+PEYN++IG++ + DYN+Q  P   + NGQ +   V
Sbjct: 1012 ADLELHEEVNAVVEIIKDSYMVLSIPEYNYAIGFSPLMDYNSQLLPHHHYDNGQRITVVV 1071

Query: 901  MALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFG 959
              +PSS ++GRL+LL KA ++ +  S SKRAKKKS Y +GSLV+AEI +IKPLEL LKFG
Sbjct: 1072 GNIPSSDSSGRLILLPKASAQYSSLSDSKRAKKKSGYKIGSLVEAEIIDIKPLELLLKFG 1131

Query: 960  IGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK--KSFLWELSIKP 1017
               HGRIHITE+ ++ S   E+ FS  +IGQ +TARI++++ +P  K  K F WELSI+P
Sbjct: 1132 GNLHGRIHITEILEEDS--AEHPFSELRIGQKLTARIVSEA-EPSGKSGKKFKWELSIRP 1188

Query: 1018 SMLT 1021
             ++ 
Sbjct: 1189 CIVN 1192



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 159/667 (23%), Positives = 273/667 (40%), Gaps = 113/667 (16%)

Query: 540  DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 599
            D VK G LV   V  V P   +V   + G  K   P  H+++ LEH      V+KP  +F
Sbjct: 553  DDVKPGMLVRAKVATVEPFGAIVQ-FSSGV-KALCPLPHMSE-LEH------VVKPPKKF 603

Query: 600  D---QLL--VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
                +LL  VL  +S  + ++ K SL+ S   + S  +      V HG++ +I + GCFV
Sbjct: 604  KVGAELLFRVLGCKSKRVTVTYKKSLVKSKLDVLSSYADAKIGLVTHGWITHIEKHGCFV 663

Query: 655  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            +F   + GF  RS        +    Y+VGQ V+  I++V   + ++            +
Sbjct: 664  KFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVVKCRIINVIPASRKL------------N 711

Query: 715  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
             SF+  H     +IA + + K             +GS++ G V       VVVS    S 
Sbjct: 712  VSFVISH----NRIAPIDTPK-------------LGSIVSGVVERLTPAAVVVSVNGFSK 754

Query: 775  VYGFITHHQLA---GATVESGSVI-------QAAILDVAKAERLVDLSLKTVFIDRFREA 824
              G I +  LA   G   +  +V+       Q  +LD  + + LV LS K   I+   + 
Sbjct: 755  --GTILNEHLADHHGQAAQLKNVLKPGHEFNQLLVLD-TEGQNLV-LSAKHSLINCANDI 810

Query: 825  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 884
             S           +    + VH     I  I++    V  L    H  G+ S  D    +
Sbjct: 811  PSEIS--------QMHPGVVVH---GYICNIIEAGCFVRFL---GHLTGF-SPKDKAVDR 855

Query: 885  FPQK---QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS---------SSKRAKK 932
            + +K    F  GQSV + ++++ + +   +L L     S  ++S             A K
Sbjct: 856  WIEKLSDAFYVGQSVRSHILSVNAETARVKLALQQSMCSSMDSSFIQGYFLLDQKIAALK 915

Query: 933  KSSYD------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF 986
             SS D      +GSLV+AE+  I+      ++GI  + + H+  V   + + +    S+ 
Sbjct: 916  YSSNDWARHFGIGSLVEAEVGAIE------EYGIILNFKDHLDTVGLIEHHQLGG--SSV 967

Query: 987  KIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML-TVSEIGSKLLFEEC---DVSIGQRV 1042
            ++G +V   ++  S+        +  LS+KP ++ +V  +G K   +     D+ + + V
Sbjct: 968  EVGSSVKGLVLDLSDG-------VVNLSVKPELIDSVRIVGKKKKRQRAVVADLELHEEV 1020

Query: 1043 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1102
               V  + + + +L+I  +  A  F     Y    L      +  G+ +T  V +I    
Sbjct: 1021 NAVVEIIKDSYMVLSIPEYNYAIGFSPLMDYNSQLLP--HHHYDNGQRITVVVGNIPSSD 1078

Query: 1103 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1162
               RL+L P          D      ++    G +V   I  I      L+++ G +L+G
Sbjct: 1079 SSGRLILLPKASAQYSSLSDSKRAKKKSGYKIGSLVEAEIIDIKPL--ELLLKFGGNLHG 1136

Query: 1163 RVHFTEL 1169
            R+H TE+
Sbjct: 1137 RIHITEI 1143



 Score = 47.4 bits (111), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 19/156 (12%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            +I  + P ++V GY+ N+   GCF+     L          D ++E     F +G+ V  
Sbjct: 813  EISQMHPGVVVHGYICNIIEAGCFVRFLGHLTGFSPKDKAVDRWIEKLSDAFYVGQSVRS 872

Query: 1307 RVLSVEPLSKRVEVTLKTS----------------DSRTASQSEINNLSNLH--VGDIVI 1348
             +LSV   + RV++ L+ S                D + A+    +N    H  +G +V 
Sbjct: 873  HILSVNAETARVKLALQQSMCSSMDSSFIQGYFLLDQKIAALKYSSNDWARHFGIGSLVE 932

Query: 1349 GQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVD 1383
             ++  +E YG+ +   ++ + VGL    +L    V+
Sbjct: 933  AEVGAIEEYGIILNFKDHLDTVGLIEHHQLGGSSVE 968



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 78/174 (44%), Gaps = 10/174 (5%)

Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
            L    D    ++  G++ ++   GCF+     +   V  S+L        E  + +G++V
Sbjct: 637  LSSYADAKIGLVTHGWITHIEKHGCFVKFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVV 696

Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
              R+++V P S+++ V+   S +R A       +    +G IV G ++R+    + +++ 
Sbjct: 697  KCRIINVIPASRKLNVSFVISHNRIAP------IDTPKLGSIVSGVVERLTPAAVVVSV- 749

Query: 1365 NTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            N    G      L++ H     ++ + + G +   ++L +D E + + L  K S
Sbjct: 750  NGFSKGTILNEHLADHHGQAAQLKNVLKPGHEFN-QLLVLDTEGQNLVLSAKHS 802



 Score = 40.4 bits (93), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 24/211 (11%)

Query: 1196 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
            Q ++C V  I +T R   H    L S  D +S +   DL        K L  I+ L P M
Sbjct: 339  QLMQCVVKAIDKT-RAIVH----LSSDEDLLSKSTIKDL--------KGLS-IDHLIPGM 384

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-FPIGKLVAGRVLSVEPL 1314
            +V   V +    G  +         V + NL + +     K+ +   K V  R+L V+P 
Sbjct: 385  MVNARVHSFLENGLMLSFLTYFSGTVDIFNLLNSFPSGNWKDDYSKNKKVNARILFVDPS 444

Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV-IGQIKRVE-SYGLFITIEN-TNLVGL 1371
            ++ V +TL    ++     E+  + NL  GDI    ++ RV+   GLF+ I + T   G 
Sbjct: 445  TRAVGLTL----NKHLLHLEVPPI-NLKAGDIYDKSKVLRVDKKAGLFLEIPSPTPSPGF 499

Query: 1372 CHVSELSEDHVDNIETIYRAGEKVKVKILKV 1402
              + ++S+    N+E  ++ G  ++V+IL V
Sbjct: 500  ISIRDVSDKDAKNLEK-FKEGSSLRVRILGV 529


>gi|384249900|gb|EIE23380.1| hypothetical protein COCSUDRAFT_28807 [Coccomyxa subellipsoidea
            C-169]
          Length = 1757

 Score =  991 bits (2562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1860 (34%), Positives = 1019/1860 (54%), Gaps = 155/1860 (8%)

Query: 1    MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 60
            M  Q++S G K+WG VAE+  ++L+I LP GL+G   AA+ + P+      A +   L +
Sbjct: 1    MLVQSLSKGAKIWGTVAEITHRELIISLPHGLKGHVPAAEVMHPL------AADVPSLSS 54

Query: 61   IFHVGQLVSCIVLQLDDDKKEI-----GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 115
            +F  GQLV C ++ L D    +     G+++I LSL ++ +  G+    +  GM L A V
Sbjct: 55   LFRAGQLVQCSIVDLQDGDSGVAGGKAGRKRIVLSLHVAKVNAGIGPAALIAGMQLPACV 114

Query: 116  KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT------RKVV 169
            +S+EDHG++L  G+   T FL R N  +    + +P  LL G V  +  T      R +V
Sbjct: 115  RSVEDHGFLLTTGVKGVTAFLERTNWLKACSGEARP--LLPGAVLPVTVTAAARPGRPLV 172

Query: 170  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 229
            ++S+DP +++K   K+ +G++I  L+PGM+V+ RV+++L +G+++SFLTYF GTVD FHL
Sbjct: 173  HVSADPKSLAKGAVKEWEGLTIGSLLPGMLVNARVRNVLSDGLLVSFLTYFNGTVDCFHL 232

Query: 230  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 289
                P  +W+  Y    +V ARI++VDP S+ V L+L P+L+   A P+   +  +++ S
Sbjct: 233  SQQPPPADWQKGYEAGARVRARIIYVDPVSKRVSLSLLPHLVAGSASPALPPINTLFEHS 292

Query: 290  KVVRVDRGLGLLL------DIPSTPVSTPA-YVTISDVAEEEVRKLEKKYKEGSCVRVRI 342
             V RVD  LGLLL      D P+   + PA Y  IS V+E  + KL+K YK G  V  R+
Sbjct: 293  IVRRVDNALGLLLELRSEDDAPAEQPNAPAGYAHISAVSESRIEKLDKVYKVGKKVAARV 352

Query: 343  LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 402
            +G R ++GLA   L+ +A      +++DV PG +V G V  V+ FG  V+   G+KAL P
Sbjct: 353  IGARPMDGLAVCTLREAAVRAGTISYADVAPGSIVSGTVENVEDFGLFVKLAPGIKALVP 412

Query: 403  LPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATD 460
              HMS+    K   KFK G ++  RVL   V +++IT++ KK LV  KL   +S+ EA  
Sbjct: 413  TVHMSDSGSEKARAKFKEGQKVSGRVLEVDVAARKITLSLKKLLVGEKLPPFASWQEAAQ 472

Query: 461  R-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
                 HG++T ++++G FV F NGV+G AP  +LGL+P  +P+  + +G+ VK R++S  
Sbjct: 473  PGARAHGFVTGVQEYGVFVSFCNGVRGLAPTQQLGLEPNQDPAKQFPIGKTVKARVVSVD 532

Query: 520  PASRRINLSFMMKP--TRVSEDDLVKLGSLVSGVVDVV---TPNAVVVYVIAKGYSKGTI 574
               RR+ LSF  K      +      +G L  G +       P A  V  +      G +
Sbjct: 533  EERRRLRLSFAPKTAADAAAAAGADPMGGLQPGTILRAGEGVPGASPVLAL------GRL 586

Query: 575  PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQQLPSDAS 632
               HLADH      +   +  G E   LL+L+   ++  L ++ K SL+ +A QLP+   
Sbjct: 587  DAAHLADHPAAEAALSEALVDGSELGPLLILERLEKAGMLRVTRKASLLAAAAQLPAAIE 646

Query: 633  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
             +   ++  GYV N+     FVRFLG LTG A  ++  D   +D S+ +  GQSVR+ ++
Sbjct: 647  DVKEGTLASGYVANVTADAVFVRFLGSLTGRAGLAQLADQFVSDPSRHFTEGQSVRAAVV 706

Query: 693  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 752
             V+    R T++LK S   + DA++ +  F   E    +++++ +  ++ W E   IG  
Sbjct: 707  TVDLAKQRFTVALKHSLTGAPDAAYARFLFADLETAERIRAAEPSTEQVNWAE-LAIGGR 765

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
              G VH+  ++GVV   + H+DV       Q+ G    +G+ I+  ILDV K + +VDL+
Sbjct: 766  AAGAVHDVKEYGVVCDLDAHADVVALAAPEQVEGEAT-TGTRIKGRILDVNKKDGIVDLT 824

Query: 813  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 872
            LK   +              K    EA   +G    V A+VE+VK++YLVLSLP    +I
Sbjct: 825  LKASLV--AGAPKKATGKAAKAALPEAVCQVGAK--VEAVVELVKDDYLVLSLPAQQQTI 880

Query: 873  GYASVSDYN--TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS-SKR 929
             +A+ SD+N  ++    +QF+ GQ + A V+   S    GR ++ +  +S++  +   KR
Sbjct: 881  AFAATSDFNLGSRAHNSRQFIPGQKISAVVVEQASPENGGRTIVHVPLVSDSPAAPREKR 940

Query: 930  AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 989
             +K +    G++V A++T                  +H T         VE      + G
Sbjct: 941  ERKPAKIPPGTIVAAKVTN-----------------MHATHAG------VE-----LESG 972

Query: 990  QTVTARIIAKSN--KPDMKKSFLWELSIKPSMLTVSEIGSKL-LFEECDVSIGQRVTGYV 1046
              + + ++A +N  + + +   L ELS++PS++   +   K  +    D+  GQ V GYV
Sbjct: 973  AHILSILLAYANLHRFEGRNHGLLELSLRPSLVAAEKGAPKPGMLSVDDLQEGQTVRGYV 1032

Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
             +   + A L +S  L+ +L  LDSA + ++L  F  RF +G+++   V+ ++K++  + 
Sbjct: 1033 QETAPDCAWLVLSPALRGRLHALDSADDVTQLAAFGGRFTVGQSLRCRVVQVDKKRGQVD 1092

Query: 1107 LVLR------PFQDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
            L LR        Q  ++ +T     +  N +  + E  I   +     SG  G+ V +  
Sbjct: 1093 LSLREPGAASAKQWHVTQRTPTPICAFANARCTMVEWQISSDKAIVACSGA-GVRVHLAG 1151

Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS-------RTVRG 1211
            H  G V  T++ +        G+ E   + L     G FV+C+VL  +       RT  G
Sbjct: 1152 HASGHVAMTDVHD--------GFVENAIESLKA---GDFVRCRVLGRAEDKGAEKRTKEG 1200

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
            T      LR           +  ++  ++  +  +++  LS    V+GYVK V+S G F+
Sbjct: 1201 TEIKRAGLREPFASNRCEQENFPASMSNSGTQGFDEL--LSFGQQVRGYVKGVSSAGAFV 1258

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
             L+R ++A+V L+NL+DGYVE P+  FP GKLV GR+L+ E    R+E++LK+    T  
Sbjct: 1259 ALARDMEARVKLNNLADGYVEDPKTAFPQGKLVRGRILATE--HNRIELSLKSKGWAT-- 1314

Query: 1332 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1391
                  L +   G +V G+++R E +G+FI I+++ + G+ H+SE++++ VD++ ++++ 
Sbjct: 1315 ------LEDFTEGQVVRGRVRRAEKFGVFIRIDDSAVTGMAHISEVADERVDDLPSMFKP 1368

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLEN 1451
            G+ V+ K+L VD E +R+SLG+K SYF +D ++ +   + + +E                
Sbjct: 1369 GQGVRAKVLSVDAETQRLSLGLKPSYFGDDDEDGEEPDQAQEEEGT-------------- 1414

Query: 1452 SSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTI 1511
                       +ED    + A++        LE  +DD   + D+  +  Q    +    
Sbjct: 1415 ----------PAEDDNDDIDAEV--------LEA-MDDSSEEEDDWRAGAQILNGDDVAA 1455

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM 1571
            D    +  ++++K E E+ +RAAE R L++  P +  +FERLV  SP+SS+VWI+YMAF 
Sbjct: 1456 DRALTKRQRRRQKAEEEERVRAAELRQLQQPPPESEVDFERLVLESPSSSYVWIRYMAFH 1515

Query: 1572 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1631
            + + +++KAR +A+RAL+TIN REE EKLN+WVA+ NLEN +G+PP+EA++K+FQ+AL +
Sbjct: 1516 MGVGEIDKARGVADRALKTINFREEREKLNVWVAWLNLENLHGSPPDEALMKLFQKALPH 1575

Query: 1632 CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ-RLLKQQQEGVQAV 1690
             D KK++LALL + ER+ +++L  + L  M +K+  S KVWLR     L +      +  
Sbjct: 1576 TDQKKLYLALLTILERSARDELTQQTLRTMTRKYWASAKVWLRAYGYDLGRNDGNAARRA 1635

Query: 1691 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1750
            + RA+ +LP  KHIK +SQ A++EFK G  +RGR +FEGIL  YPKR DLWSIYLDQEIR
Sbjct: 1636 LDRAIGALPARKHIKVLSQAALMEFKEGDPERGRGVFEGILRNYPKRLDLWSIYLDQEIR 1695

Query: 1751 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
             GD    R LFERA  LSLPPKKMKFLFK++L++EK+ G+   +E+VKQ A EYVE+ LA
Sbjct: 1696 AGDRQRARSLFERATHLSLPPKKMKFLFKRFLDFEKTHGDAAGVEHVKQAAKEYVEANLA 1755


>gi|145350993|ref|XP_001419873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580106|gb|ABO98166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1869

 Score =  991 bits (2561), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/1848 (34%), Positives = 1041/1848 (56%), Gaps = 144/1848 (7%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            +++  G KL G+++EV  + LV+ LP GLRG    A+      +++ + + +  L  ++ 
Sbjct: 111  KSLRPGAKLLGIISEVTARGLVMSLPDGLRGTVARAEVAGTSDEDDDDDDAEASLELLYE 170

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
             GQ++ C V+ L+  K + G ++I LSLRL  + +GL+ E++ EG V  A V+S+EDHGY
Sbjct: 171  PGQVLRCAVVSLE--KGKTGGKRIELSLRLEKVCEGLTKESLTEGSVAPAVVQSVEDHGY 228

Query: 124  ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVY-LSSDPDTVSKCV 182
            IL FG+   +GFLP+ N+A + G +++ G ++  V+    +  K  + ++SD   +   V
Sbjct: 229  ILSFGIADTSGFLPKKNVASDLG-EIRKGRIIDVVITGAPKGNKGYFTVTSDQKRIKTSV 287

Query: 183  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 242
              +    ++D L+PGM+V++R++ IL +GV +SF+TYF+GTVD FH      +    + +
Sbjct: 288  AHETSATNVDTLLPGMLVNSRIKQILSDGVSVSFMTYFSGTVDCFHTGALATSKGVSSAF 347

Query: 243  NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL 302
               +++ ARI+FVD  S+ V LTL P+LL + A     K+G  +  +K+ RVD G G+ L
Sbjct: 348  KVGQRMRARIIFVDSASKRVSLTLLPHLL-DYASIELPKLGKTFQTAKIERVDAGQGVAL 406

Query: 303  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 362
             I         Y  +S +++E V K+EKK+K G  V VR++G R L+G+ +  LK+S   
Sbjct: 407  SISDGKNDIAGYAHVSQLSDERVEKVEKKFKIGRSVSVRVIGHRLLDGVVSVSLKSSVMA 466

Query: 363  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 422
               F+  ++ PGM+V G+V+AV+ +GAIV+   G+KALCP  H+S+        K   GA
Sbjct: 467  QPFFSLDELTPGMLVNGEVLAVEHYGAIVKLAEGIKALCPPLHISDIVGRTTSAKVAPGA 526

Query: 423  ELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 480
            +L FRVL V   S+R TV+HK+TL+KS+L ++    +A    ITHG +T + ++G FV  
Sbjct: 527  KLKFRVLNVDRNSRRATVSHKRTLIKSELPVIGQIEDAVPGSITHGVVTGVNEYGVFVSL 586

Query: 481  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM---------- 530
            Y  ++G A  ++LGL    +PS  + VGQVV+ +++S+   S R+ LS            
Sbjct: 587  YGDLKGLAGLNDLGLLRDQKPSDAFGVGQVVRVQVVSA-DTSGRLRLSLASGDADGNSAS 645

Query: 531  ---------MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 581
                     +KP  V E  +V    + SG     T N  VV+ + +G   G +P  HL+D
Sbjct: 646  MIINASADALKPGHVVEKAVVT--HVASG-----TGNVEVVFSMEEGNIPGVVPLAHLSD 698

Query: 582  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSV 639
            H   A  + +V+ PG E   L+VL+ +S+  ++S K SL+ S+++  LP+ A      +V
Sbjct: 699  HPLTAQGLSAVLNPGDEIGPLVVLEGKSTRAVMSRKLSLVESSREGKLPATAKEATLGAV 758

Query: 640  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL--DVNSE 697
              GYV +    G FVRFLGRLTG AP S+  DG   D+ + + VG++V + IL  D ++ 
Sbjct: 759  FPGYVASATAAGVFVRFLGRLTGLAPPSQLTDGTTGDVHEMFPVGKTVNALILSVDTSTP 818

Query: 698  TGRITLSLKQSCCSS--TDA----SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 751
            T R++LSLK S  SS  +DA    SF Q+   L+++      ++  G   +  +    G+
Sbjct: 819  TPRLSLSLKVSATSSPLSDAPLVRSFFQDIEFLDDRDV---GAEDVGISPETAKSLKPGT 875

Query: 752  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL-AGATVESGSVIQAAILDVAKAERLVD 810
             ++  V+E+ D+GV++     S+V G +T HQ+    T  +G  ++  +LDV++ E +VD
Sbjct: 876  WMDVSVNETKDYGVLMDVPIDSNVVGLVTPHQIPVDTTFTAGDEVKGYVLDVSRREGVVD 935

Query: 811  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 870
            + ++    D   +   N+ +  K  K+     L V   V+A VE++K  Y+ LSLPE+N 
Sbjct: 936  IGMR----DGLGKFKRNKTSSGKSLKK-----LKVGDQVSAEVELIKAEYVALSLPEHNG 986

Query: 871  SIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKR 929
             IG+A V   N + +   ++F   Q V A +  LP     GRLLL +  +++  T+S + 
Sbjct: 987  LIGFAPVHHLNLRYEDASERFTPTQCVKAVIAQLPEGEM-GRLLLTV-PVTKGTTASGRI 1044

Query: 930  AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 989
            A        G+LV+  ++E++ L+  +       GR++I+E +  +   +E++     +G
Sbjct: 1045 A-------AGTLVKGVVSEVQNLQALVALPNNARGRLYISEFSPGEDTPLESI----SVG 1093

Query: 990  QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1049
             TV A ++  +      +  L +LS+            K  F   DVS+G  V+ YV  V
Sbjct: 1094 STVEATVMGLAGD----RGGLLDLSMH----------RKSAFVLEDVSVGDDVSAYVVSV 1139

Query: 1050 DNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1108
             ++   +TI+  + + +  ++++ + SEL  +   RF +G+ V+  ++ +   KK + L 
Sbjct: 1140 TDDGIKVTIAPGITSFIPKIETSDKSSELAMKLSSRFTVGERVSAIIVGVKATKKRVDLS 1199

Query: 1109 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1168
            LR   DG S            + +  G  V G I++++  VG L+VQ+G H  GRVH T+
Sbjct: 1200 LR--TDGASG----------SSRVCVGAKVQGIITRVVENVG-LMVQLGSHSVGRVHLTD 1246

Query: 1169 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1228
            +            DE   DP + Y+ GQ V+ +VL  S        ++LS+R+S      
Sbjct: 1247 MA-----------DEYDDDPCAKYEAGQVVQVRVLNAS----SNGELDLSMRASRLSSKR 1291

Query: 1229 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1288
            T+ +D           +  I +L P   V+GYVK  + KGCFI LSR +DA   LSNL+D
Sbjct: 1292 TSPTD---------PEITDISNLVPGQRVKGYVKATSKKGCFIALSRGIDAMCKLSNLAD 1342

Query: 1289 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1348
             ++  P K FP GKLV GR++S +    RVE+  + +D+   +     ++S + VGD++I
Sbjct: 1343 SFIADPAKTFPPGKLVEGRIVSADAAKGRVELAFRETDATQGNA----DVSTVKVGDVLI 1398

Query: 1349 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKR 1407
            G ++RV+ YG+F++++ T L GLCH+S  ++  + D++ +  R GE+V+ K+L+++ E  
Sbjct: 1399 GTVRRVQPYGVFVSLDGTKLSGLCHISMFADARISDDLASHVRQGERVRTKVLEINTETN 1458

Query: 1408 RISLGMKSSYFKNDADNL-----QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDME 1462
            +ISLG+K+S F++D  +       +++    D  ++   S    S ++      +D  + 
Sbjct: 1459 KISLGIKASLFEDDDGDGDEEMADVNTAHTFDPLMDSSESGESDSDID------EDGPLH 1512

Query: 1463 SEDGGSLVLAQIESRASVPPL--EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK 1520
            +++G S       S +   P+  ++  D +    D  ++         K  D+  ++  K
Sbjct: 1513 ADEGESTDEESDPSDSEDAPIGNDLGFDWDAEKTDASMTDVADEKAGKKGADKAPSKREK 1572

Query: 1521 KKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEK 1579
            K+ KE RE EI   E+ + + D  P +  EFE+L+ +SP SSF+W++YMAF +S    ++
Sbjct: 1573 KRLKEARELEILQKEQEMRDGDHIPESAMEFEKLLIASPRSSFLWVRYMAFHVSCGAYDE 1632

Query: 1580 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-PEEAVVKVFQRALQYCDPKKVH 1638
            A+ +AERAL  I   EE E++N+W AY NLEN+YG P PEEAV K+F RA+Q  D K +H
Sbjct: 1633 AKEVAERALGAIPASEEAERMNVWAAYLNLENKYGTPSPEEAVKKLFTRAVQIADAKHMH 1692

Query: 1639 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR-LLKQQQEGVQAVVQRALLS 1697
            L L+ +YER  Q    +E L K  KKF +S K+WL  ++  +LK   E  + ++ RA  S
Sbjct: 1693 LTLVSMYERNAQEDALEESLKKAAKKFSYSAKIWLAYIRSAVLKNDSEKARKLLDRATQS 1752

Query: 1698 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1757
            LP+HKHIK +++TA+LE K G  +RGR+MFEGIL  YP+RTD+WS+Y+DQEI+ GD+  I
Sbjct: 1753 LPKHKHIKILTRTALLEMKEGNPERGRTMFEGILRNYPRRTDIWSVYIDQEIKQGDIQRI 1812

Query: 1758 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            R LFERA  L L  K MKFLFK+YL++E+S G++ERI +VKQ+AMEYV
Sbjct: 1813 RALFERATHLDLNAKSMKFLFKRYLDFERSEGDDERIAHVKQRAMEYV 1860


>gi|412992671|emb|CCO18651.1| predicted protein [Bathycoccus prasinos]
          Length = 2077

 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/2011 (30%), Positives = 1013/2011 (50%), Gaps = 283/2011 (14%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL------ 57
            + +  G+KL G+V+ V+ K L++ L  GL+G    ++A D         N+D +      
Sbjct: 139  KTLRRGVKLLGIVSHVSNKGLIVSLQNGLKGTVSKSEASDAFYIT----NKDRVKRKSKK 194

Query: 58   ---------------------------------------LPTIFHVGQLVSCIVLQLDDD 78
                                                   L ++FHVGQ+V C V+ LD+ 
Sbjct: 195  KPSSYSSSEEEFSSSSSSSEESSGEEEEEEDGGKKAKIGLESLFHVGQIVRCAVVNLDEG 254

Query: 79   KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR 138
            K   G ++I L+LRLS +  GL  E + EG  + A V S+EDHGYI+ FG+   TGFL R
Sbjct: 255  K--TGGKRIELTLRLSQVCAGLDKECLTEGAAIPAVVTSVEDHGYIVEFGIDGSTGFLSR 312

Query: 139  NNLAENSGIDVKPGLLLQGVV------------------RSIDRTRKVVY-LSSDPDTVS 179
            ++  +     +  G L++ V+                  R        VY +S+D    S
Sbjct: 313  DSAGDEHD-SLLTGQLIEVVIALTPKAKKDINNNKKKNGRGSKLGESNVYKVSADTKRCS 371

Query: 180  KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 239
              +  + K   I  ++PGM+V  RV+S+LE+G+ +SF+TYF+GT+D FH+     T+   
Sbjct: 372  SAIALENKSTLISTILPGMLVKARVKSVLEDGISVSFMTYFSGTIDCFHIAAEDTTS--- 428

Query: 240  NDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV-KVGDIYDQSKVVRVDRGL 298
              + + +K+ +R++FVD  ++ VGL+L P+LL  R+P S +   G I++ + + RVD  +
Sbjct: 429  --FKEGQKLRSRVIFVDAQNKRVGLSLQPHLLEARSPASILPSTGSIFENAMINRVDPNV 486

Query: 299  GLLLDIP--STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 356
            G+ L I       S   Y  +S ++++ V K+EKKYK G  V+VR++G R L+ +A   L
Sbjct: 487  GVSLQISQGGKTRSVAGYAHVSHLSDDHVEKIEKKYKVGKQVKVRVIGHRLLDAVANVSL 546

Query: 357  KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 416
            K S  E   F+  ++ PGM+VKG+V+A + FGAIV+   GVKALCP  H+S+        
Sbjct: 547  KRSVLEQPFFSLEELVPGMIVKGEVLATEHFGAIVKLAEGVKALCPPIHVSDIVGRTTSS 606

Query: 417  KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 474
            K   GA L FRV+ V   R    VTHK+ L+KS+L +L +  +A     THG I+ +  +
Sbjct: 607  KVTPGAILKFRVISVDRSRHRAIVTHKRALIKSELPVLKTIEDAIPGRTTHGIISGVVDY 666

Query: 475  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
            G FV  Y  ++G A   +LGL  G   +  Y VGQV++  I+S+     ++ LS      
Sbjct: 667  GVFVTLYGNLKGLAGSQDLGLAEGQSIADAYAVGQVIRTTIVSADRGENKLRLSLGG--G 724

Query: 535  RVSEDDLVKLGS--------------------------LVSGVVDVVTPNAVVVYVIA-- 566
              +EDD    G+                            S  +  +   + ++ V +  
Sbjct: 725  GGNEDDNAAEGAEATVGAAAAAAAAISLSTDAVPIGKVFASATITKIVQGSSIIEVTSST 784

Query: 567  -KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF-DQLLVLDNESSNLLLSAKYSLIN-- 622
             +G  +G +  +HL+D+   A  M S +K G       +V++ +   +++S K S+I   
Sbjct: 785  EEGSFQGLVAFQHLSDNPVTALSMASTLKVGEVLPGAFVVIERKPKRVVMSRKLSIIEAV 844

Query: 623  SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 682
            ++  LP  A  +    +  GYV +   TG FVRFLG LTG AP S+  DG  A  + +++
Sbjct: 845  TSSSLPDRADKVKAGKIYPGYVASTSSTGVFVRFLGSLTGLAPPSQIPDGCNA--TDSFF 902

Query: 683  VGQSVRSNILDVNSET--GRITLSLKQSCCSS--TDASFMQEHF----LLEEKIAMLQSS 734
            VGQ+V++ +L V+ E    R++LSL+    +   +DA  ++  F     L+ K+A     
Sbjct: 903  VGQTVQAMVLSVDVECVPPRLSLSLRLQTTAQPLSDAPLIRSFFADLEFLDFKVAQDPKE 962

Query: 735  KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE---- 790
                   K V  F  G  IEG ++E+ D+GV++  +E  +  G ++ HQ+   +VE    
Sbjct: 963  AETLLSEKTVRMFEPGCDIEGSINETKDYGVLIDIDEDENAVGLVSPHQVP-ESVEIEEF 1021

Query: 791  -SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 849
               + +   +LDV++ E ++D+   +V  ++       ++ +       A K L V +  
Sbjct: 1022 TPETRLSGRVLDVSRREGVIDIGKVSVVTEKNLSKKKKKKVKSAS---AALKKLKVGEAT 1078

Query: 850  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSSST 908
             AIVE++K  Y++LSLP+Y+ +IGYA V   N +     ++F   Q V   +  +PS+S+
Sbjct: 1079 EAIVELIKAQYVILSLPKYSDAIGYAPVHYCNVRLNDASERFEVNQRVNVVIAQVPSASS 1138

Query: 909  ----------AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF 958
                      + RLLL +  +   +++S  +        VG+  Q  ++E++PL+  +  
Sbjct: 1139 PDDVKGDEFYSNRLLLTVPYVDTNKSNSGPK--------VGTKFQGVVSELQPLQALVSL 1190

Query: 959  GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPS 1018
                 GRIHITE      +          +G TV   ++  +      +  L +L+++ S
Sbjct: 1191 PNSKKGRIHITETGAFAKSKFP--LEELSLGLTVNVAVLGMAGD----RGGLLDLTLRSS 1244

Query: 1019 MLTVSE-----IGSKLLFEECDVS------------IGQRVTGYVYKVDNEWALLTISRH 1061
                 +       +K   ++ D +            +GQ +  YV  V  +   + I   
Sbjct: 1245 ADEDKDDENVNKNAKNGNDDFDATASLKRPTLQTLEVGQSIHAYVISVLPDGVKVCIRPE 1304

Query: 1062 LKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1120
            + A + ++++A    EL++  ++RF  G+ +   ++++N                +S K 
Sbjct: 1305 ITAFVPLIETASSIKELKKPLEKRFSKGEKIKATIVNVN----------------VSKKH 1348

Query: 1121 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1180
            VD+S  + Q  +  G  V G IS+   G   ++V++G H+ GRV  T++           
Sbjct: 1349 VDVSFRD-QNSVSVGAKVFGIISRFNKGTS-MMVRLGAHVTGRVFLTDVS---------- 1396

Query: 1181 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1240
             DE Q  P S       V   V     +++ +  V+LS+R SL   S     +++     
Sbjct: 1397 -DEFQEKPFSEMK----VGNVVEVRVVSMKSSGEVDLSMRPSLLSKSGEKKKNVANPEIN 1451

Query: 1241 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1300
              K+LE  +++S      GYVK+V   GCF+ LSR +DA + L+NL+DG+V  P  EFP 
Sbjct: 1452 DAKNLEVGKEVS------GYVKSVGKSGCFVALSRNVDALIKLTNLADGFVVKPSVEFPT 1505

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
            G+L+ GR+LS +  + RVE++L+ S  DS+T ++  +   ++L VGD+V+G ++ V+SYG
Sbjct: 1506 GRLIRGRILSADAKTNRVEMSLRASQSDSKTPNKEAV---ASLKVGDVVMGTVRSVQSYG 1562

Query: 1359 LFITIENTNLVGLC--------HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1410
            +F+T++ + + GLC        HV +   +HV   E +     KV  +  KV    +   
Sbjct: 1563 VFVTLDESGISGLCHISMFADMHVKDDLANHVRAGERVRAKIMKVDYETSKVSLGIKASV 1622

Query: 1411 LGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLV 1470
             G       N A   +  SE+E +   + + S +      N+  A  D+D   E+  +L 
Sbjct: 1623 FGDDDDDIDNGAQR-EGDSEDEDEMHDDLLLSDDDDEDTTNNKAAKMDLDEPEEEVENLS 1681

Query: 1471 LAQIESRASV--------------------------------------------PPLEVN 1486
              + E RA                                                ++  
Sbjct: 1682 EKE-EGRAEESESDEENNEDDDDDEDEDEDEDDDDDGEDNEDENDDNNTATEKEEDVDFA 1740

Query: 1487 LDDEQPDMDNGISQNQGHTDEAKTIDEKNN-----RHAKKKEKEEREQEIRAAEERLL-E 1540
             D+E+ +    ++  +   +E+  ++E  N     + AK+++  E E EI   E++L  E
Sbjct: 1741 WDEEEKEQKQKLNAMKRSREESTHLEEGENANKLSKRAKRRKAREVEMEILRQEQQLRDE 1800

Query: 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1600
               P +  E+E+L+ +SP SSF+WI+Y+AF +S+   E AR++AERAL+ I  +EE+E++
Sbjct: 1801 GRLPESASEYEKLILASPLSSFLWIQYVAFQVSVGAYEDARAVAERALEAIPAQEEDERM 1860

Query: 1601 NIWVAYFNLENEYGNP-PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLY 1659
            NIW+AY NLEN +G P P+EAV ++F+RA+   DPKK++L L+ +Y R EQ ++ +E L 
Sbjct: 1861 NIWIAYLNLENSHGLPNPKEAVSRLFKRAVNLADPKKLYLVLVDMYTRAEQIEILEETLK 1920

Query: 1660 KMIKKFKHSCKVWLRRVQRL-LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1718
             ++KKF+ SCKVWL  ++ + LK   EG + ++ RA  SLP+ KHIK + + A+LE K G
Sbjct: 1921 LIVKKFRSSCKVWLTYIRHVTLKGDAEGSRKLLDRATTSLPKRKHIKLLVKVALLEMKEG 1980

Query: 1719 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1778
              +RGR+MFEGIL  YPKRTD+WS+Y+DQEI+    + IR LFERA  L L  + MKFLF
Sbjct: 1981 DPERGRTMFEGILRNYPKRTDIWSVYIDQEIKQNIPERIRALFERATHLELNARSMKFLF 2040

Query: 1779 KKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
            K+YLEYE+S G  ER+ YVK +AMEYVE TL
Sbjct: 2041 KRYLEYERSHGNTERMTYVKARAMEYVERTL 2071


>gi|115471081|ref|NP_001059139.1| Os07g0203300 [Oryza sativa Japonica Group]
 gi|113610675|dbj|BAF21053.1| Os07g0203300, partial [Oryza sativa Japonica Group]
          Length = 689

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/718 (56%), Positives = 527/718 (73%), Gaps = 35/718 (4%)

Query: 1098 INKEKKLLRLVL---RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            +N+EK+LLRL     +   + I +    +S     T   +GDI+GGRI KIL GVGGLV+
Sbjct: 2    VNREKRLLRLKALDSQSLPENIGETQKPLSATVEHT--KQGDIIGGRIQKILPGVGGLVI 59

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
            QIGPHL+GRVH+TE+ +  V +P+SG+ EGQ           FVKCKVL++SR+  G+  
Sbjct: 60   QIGPHLHGRVHYTEIVDSWVQEPISGFHEGQ-----------FVKCKVLDVSRSSEGSVR 108

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V+LSLRSS+   +S  S  L  D        EKI DL P   V+GYVK+V SKGCFIM+S
Sbjct: 109  VDLSLRSSM-CANSNQSRRLFDDSRIRTSRFEKINDLCPGTEVKGYVKSVNSKGCFIMVS 167

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
            R ++A+++LSNLSD YVE+P+ +FP+G LV GRVLS EP S +VEV+L+ +    + +S+
Sbjct: 168  RTIEARIILSNLSDEYVENPQNDFPVGLLVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSD 227

Query: 1335 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1394
              + S+LHVGDI+ GQ+KRVES+GLF+TI+ + LV LCHVSELS++ V +I + ++AG+K
Sbjct: 228  DISYSDLHVGDIIAGQVKRVESFGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDK 287

Query: 1395 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV 1454
            VK KILK+D+E+ R+S+GMK SY   D+     +S++E DE + E  S N          
Sbjct: 288  VKAKILKIDEERHRVSIGMKKSYIGPDSTG--DTSDDEDDEIVPEEISRNPV-------- 337

Query: 1455 AVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEK 1514
                  M  +   +LVL + ESRASV PL+V+LD+ +       ++ Q   +  +  D+K
Sbjct: 338  ------MGRDRNHALVLPKPESRASVLPLQVSLDESEGSDQENDNKGQEIANGTEVDDKK 391

Query: 1515 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1574
            +N+  K+K +++RE EI A EER L++D P+TPDEFE+LVRSSPNSSFVWI YMAF+L +
Sbjct: 392  SNKRLKEKARKQRELEISALEERALQRDIPQTPDEFEKLVRSSPNSSFVWINYMAFLLDL 451

Query: 1575 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634
            ADV+KAR++AERAL+TINIREE EKLN+WVAYFNLENEYG+P E+AV K+FQRALQYCDP
Sbjct: 452  ADVDKARAVAERALRTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDP 511

Query: 1635 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQ 1692
            KKVHLALL +YERTEQ  LADELL +M K+FK SCK+WLR +Q  LKQ +  E ++ +V+
Sbjct: 512  KKVHLALLAMYERTEQYTLADELLDRMTKRFKTSCKIWLRCIQLSLKQSKDVECIKLIVK 571

Query: 1693 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1752
            RALLSLP+ K  KF+SQTAILEFK GV + GRS FE IL EYPKRTDLWS+YLDQEIRLG
Sbjct: 572  RALLSLPQSKRRKFLSQTAILEFKCGVPEEGRSRFELILREYPKRTDLWSVYLDQEIRLG 631

Query: 1753 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            D ++IR LFER   LSLPPKKMKFLFKKYLEYEKS G+EERIE+VKQKA+EYV+S+LA
Sbjct: 632  DTEIIRALFERVTCLSLPPKKMKFLFKKYLEYEKSQGDEERIEHVKQKALEYVQSSLA 689



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 139/314 (44%), Gaps = 42/314 (13%)

Query: 939  GSLVQAEITEIKPL--ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 996
            G ++   I +I P    L ++ G   HGR+H TE+ D   + V+   S F  GQ V  ++
Sbjct: 40   GDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVD---SWVQEPISGFHEGQFVKCKV 96

Query: 997  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL---------FEEC-DVSIGQRVTGYV 1046
            +  S   +   S   +LS++ SM   S    +L          FE+  D+  G  V GYV
Sbjct: 97   LDVSRSSE--GSVRVDLSLRSSMCANSNQSRRLFDDSRIRTSRFEKINDLCPGTEVKGYV 154

Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
              V+++   + +SR ++A++ +  S      ++  Q  F +G  V G VLS   +   + 
Sbjct: 155  KSVNSKGCFIMVSRTIEARIIL--SNLSDEYVENPQNDFPVGLLVHGRVLSSEPQSGKVE 212

Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI-GPHLYGRVH 1165
            + LR      S K+ DIS  ++    H GDI+ G++ ++ S   GL V I G  L    H
Sbjct: 213  VSLRKNTGSKSQKSDDISYSDL----HVGDIIAGQVKRVES--FGLFVTIQGSELVALCH 266

Query: 1166 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1225
             +EL            DE   D  S +  G  VK K+L+I         V + ++ S  G
Sbjct: 267  VSELS-----------DEPVLDIHSCHKAGDKVKAKILKIDEE---RHRVSIGMKKSYIG 312

Query: 1226 MSSTNSSDLSTDVD 1239
              ST   D S D D
Sbjct: 313  PDSTG--DTSDDED 324



 Score = 47.8 bits (112), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 10/188 (5%)

Query: 356 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 415
           ++ S FE +    +D+ PG  VKG V +V+S G  +     ++A   L ++S+  +  P 
Sbjct: 133 IRTSRFEKI----NDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQ 188

Query: 416 KKFKVGAELVFRVLGV--KSKRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
             F VG  +  RVL    +S ++ V+  K T  KS+ +   SY++     I  G + ++E
Sbjct: 189 NDFPVGLLVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVE 248

Query: 473 KHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531
             G FV      +      SEL  +P  +  S +  G  VK +I+       R+++   M
Sbjct: 249 SFGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDKVKAKILKIDEERHRVSIG--M 306

Query: 532 KPTRVSED 539
           K + +  D
Sbjct: 307 KKSYIGPD 314



 Score = 40.4 bits (93), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 110/264 (41%), Gaps = 45/264 (17%)

Query: 500 EPSSMYHVGQVVKCRIMS---SIPASRRINLSF-------------MMKPTRVSEDDLVK 543
           EP S +H GQ VKC+++    S   S R++LS              +   +R+      K
Sbjct: 81  EPISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLRSSMCANSNQSRRLFDDSRIRTSRFEK 140

Query: 544 L-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
           +     G+ V G V  V  N+   +++     +  I   +L+D          V  P  +
Sbjct: 141 INDLCPGTEVKGYVKSV--NSKGCFIMVSRTIEARIILSNLSDEY--------VENPQND 190

Query: 599 FD-------QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIE 649
           F        ++L  + +S  + +S + +   S  Q   D S+  +H   ++ G V  +  
Sbjct: 191 FPVGLLVHGRVLSSEPQSGKVEVSLRKN-TGSKSQKSDDISYSDLHVGDIIAGQVKRVES 249

Query: 650 TGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G FV   G  L      S+  D    D+   +  G  V++ IL ++ E  R+++ +K+S
Sbjct: 250 FGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDKVKAKILKIDEERHRVSIGMKKS 309

Query: 709 CC---SSTDASFMQEHFLLEEKIA 729
                S+ D S  ++  ++ E+I+
Sbjct: 310 YIGPDSTGDTSDDEDDEIVPEEIS 333


>gi|255581556|ref|XP_002531583.1| programmed cell death protein, putative [Ricinus communis]
 gi|223528779|gb|EEF30786.1| programmed cell death protein, putative [Ricinus communis]
          Length = 607

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/487 (79%), Positives = 425/487 (87%), Gaps = 16/487 (3%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
           +NIS GMK+WGVVAEVNEKDLVI LPGGLRGLAR+ DALDP+  +EIE  E NL P+IF 
Sbjct: 134 KNISPGMKVWGVVAEVNEKDLVISLPGGLRGLARSVDALDPVFGDEIEDIEGNL-PSIFC 192

Query: 64  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            GQLVSC VLQLD+DKK+ G RKI LSLRLSLL+KG SL+ +QEGMVLTAYVKSIEDHGY
Sbjct: 193 TGQLVSCTVLQLDEDKKDSGTRKIRLSLRLSLLHKGFSLDAIQEGMVLTAYVKSIEDHGY 252

Query: 124 ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 183
           ILHFGLPSFTGFLP+N+  E+S  +VK G LLQG+VR +D+TRKVVYLSSDP  VSKCV 
Sbjct: 253 ILHFGLPSFTGFLPKNSQDESSSAEVKTGQLLQGIVRRVDKTRKVVYLSSDPSAVSKCVV 312

Query: 184 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 243
           KDLKGISIDLLVPGMMV+ RVQS L NG+MLSFLTYF+GTVDIFHLQNTF  +NW++DYN
Sbjct: 313 KDLKGISIDLLVPGMMVNARVQSTLGNGIMLSFLTYFSGTVDIFHLQNTFSASNWRDDYN 372

Query: 244 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 303
            +KKVNARILFVDP++RAVGLTLN +L+HN APP+HVKVGDIYD +KVVRVD+ +GLLL+
Sbjct: 373 NNKKVNARILFVDPSTRAVGLTLNQHLVHNHAPPTHVKVGDIYDGAKVVRVDKSMGLLLE 432

Query: 304 IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
           IPS PVSTPAYV+               YKEGS VRVRILG+RHLEGLATGILKASAFEG
Sbjct: 433 IPSAPVSTPAYVS---------------YKEGSKVRVRILGYRHLEGLATGILKASAFEG 477

Query: 364 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
            VFTHSDVKPGMVV+ K+IAVDSFGAIVQFPGG+KALCPL HMSEFEI KP KKFKVGAE
Sbjct: 478 PVFTHSDVKPGMVVRAKIIAVDSFGAIVQFPGGLKALCPLRHMSEFEIAKPRKKFKVGAE 537

Query: 424 LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
           L+FRVLG KSKRITVTHKKTLVKSKLAILSSYAEATD LITHGWITKIEKHGCFV FYNG
Sbjct: 538 LLFRVLGCKSKRITVTHKKTLVKSKLAILSSYAEATDGLITHGWITKIEKHGCFVHFYNG 597

Query: 484 VQGFAPR 490
           VQGFAPR
Sbjct: 598 VQGFAPR 604



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            D+ P M+V+  +  V S G  +     L A   L ++S+  +  P K+F +G  +  RVL
Sbjct: 484  DVKPGMVVRAKIIAVDSFGAIVQFPGGLKALCPLRHMSEFEIAKPRKKFKVGAELLFRVL 543

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYGLFITIEN 1365
              +  SKR+ VT K    +T  +S++  LS+      G I  G I ++E +G F+   N
Sbjct: 544  GCK--SKRITVTHK----KTLVKSKLAILSSYAEATDGLITHGWITKIEKHGCFVHFYN 596



 Score = 41.2 bits (95), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 7/126 (5%)

Query: 542 VKLGSLV-SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 600
           VK G +V + ++ V +  A+V +    G  K   P  H+++  E A   K   K G E  
Sbjct: 485 VKPGMVVRAKIIAVDSFGAIVQF---PGGLKALCPLRHMSE-FEIAKPRKK-FKVGAEL- 538

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
              VL  +S  + ++ K +L+ S   + S  +      + HG++  I + GCFV F   +
Sbjct: 539 LFRVLGCKSKRITVTHKKTLVKSKLAILSSYAEATDGLITHGWITKIEKHGCFVHFYNGV 598

Query: 661 TGFAPR 666
            GFAPR
Sbjct: 599 QGFAPR 604


>gi|449502545|ref|XP_004161672.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Cucumis
           sativus]
          Length = 609

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/487 (72%), Positives = 409/487 (83%), Gaps = 15/487 (3%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
           +NI+  MK WGVVAEVN+KDLVI LPGGLRGL  AA+A DPIL+ E+E  E +LLP +FH
Sbjct: 119 KNINPRMKFWGVVAEVNKKDLVISLPGGLRGLVSAAEAFDPILEKEVEDTEHDLLPVMFH 178

Query: 64  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
           VGQLV C+VL++DDDKKE GKRKIWLSLRLS+LYK  +L+ +QEGMVLT+YVKSIEDHGY
Sbjct: 179 VGQLVPCVVLKVDDDKKESGKRKIWLSLRLSILYKDFTLDLLQEGMVLTSYVKSIEDHGY 238

Query: 124 ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 183
           ILHFGL SFTGFLP+   ++ S  +V  G LLQ VVRSID+TRKVVY SSD D VS  V 
Sbjct: 239 ILHFGLTSFTGFLPKTKQSDQSENEVHVGQLLQCVVRSIDKTRKVVYFSSDQDIVSSSVA 298

Query: 184 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 243
           KDLKGISIDLL+PGMMVS RVQS LENG++LSFLTYF GTVD+FHLQN+F ++NWK+ YN
Sbjct: 299 KDLKGISIDLLIPGMMVSARVQSTLENGILLSFLTYFNGTVDMFHLQNSFHSSNWKDFYN 358

Query: 244 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 303
           Q+ K+NARILF+DP++RAVGLTL P+L+ N+A P H+++GDIYD +KVVRVDRG GLLL+
Sbjct: 359 QNMKMNARILFIDPSTRAVGLTLIPHLVRNKAAPPHLRIGDIYDSAKVVRVDRGFGLLLE 418

Query: 304 IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
           +PS+P STP +V+               +KEGS VRVRILGFRHLEGLA G LKASAFEG
Sbjct: 419 VPSSPESTPTFVS---------------FKEGSRVRVRILGFRHLEGLAIGTLKASAFEG 463

Query: 364 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
            VF++SDVKPG +++ KVI VD FGAIVQFPGG+KALCPL HMSEFEIVKP KKFKVGAE
Sbjct: 464 PVFSYSDVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIVKPRKKFKVGAE 523

Query: 424 LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
           L+FRVLG KSKRITVTHKKTLVKSKL +LSSYA+AT  L+THGWITKI KHGCFVRFYNG
Sbjct: 524 LIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIXKHGCFVRFYNG 583

Query: 484 VQGFAPR 490
           VQGFAPR
Sbjct: 584 VQGFAPR 590



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 15/130 (11%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD- 600
           VK G+L+   V VV     +V     G  K   P  H+++          ++KP  +F  
Sbjct: 471 VKPGTLIRAKVIVVDDFGAIVQF--PGGLKALCPLSHMSEF--------EIVKPRKKFKV 520

Query: 601 --QLL--VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
             +L+  VL  +S  + ++ K +L+ S  ++ S  +      V HG++  I + GCFVRF
Sbjct: 521 GAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIXKHGCFVRF 580

Query: 657 LGRLTGFAPR 666
              + GFAPR
Sbjct: 581 YNGVQGFAPR 590



 Score = 41.6 bits (96), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            D+ P  +++  V  V   G  +     L A   LS++S+  +  P K+F +G  +  RVL
Sbjct: 470  DVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIVKPRKKFKVGAELIFRVL 529

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIEN 1365
              +  SKR+ VT K    +T  +S++  LS   +   G +  G I ++  +G F+   N
Sbjct: 530  GCK--SKRITVTHK----KTLVKSKLEVLSSYADATAGLVTHGWITKIXKHGCFVRFYN 582


>gi|308808252|ref|XP_003081436.1| rRNA processing protein Rrp5 (ISS) [Ostreococcus tauri]
 gi|116059899|emb|CAL55958.1| rRNA processing protein Rrp5 (ISS) [Ostreococcus tauri]
          Length = 1947

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1467 (32%), Positives = 803/1467 (54%), Gaps = 141/1467 (9%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI------------------ 45
            +++ +G+KL GVV+EV  + LV+ LP GLRG    A+A D                    
Sbjct: 112  KSLRSGVKLLGVVSEVTARGLVMSLPDGLRGTVARAEASDVFRGATRSAGAESADDESES 171

Query: 46   LDNEIEANEDNL-LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 104
             D+E E  E+ + L +++  GQ++ C+VL LD  K + G ++I LSLRL  +  G+  ++
Sbjct: 172  SDDEFEGEEETISLESLYEPGQVLRCVVLSLD--KGKTGGKRIELSLRLENVCAGIGKDS 229

Query: 105  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 164
            + EG V  A VKSIEDHGYIL FG+   +GFLP+ ++A +  + ++ G +L  V+ +   
Sbjct: 230  LVEGSVAPAMVKSIEDHGYILDFGIAGTSGFLPKKSVAND--LTIRRGKILDVVITATPT 287

Query: 165  TRKVVY-LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGT 223
              K  + ++SD   V+  V+ +    ++  L+PGM+V++RV+ +L +G++ SF+T+F+GT
Sbjct: 288  GNKGYFTVTSDQKRVTSSVSHETSATNVSTLLPGMLVNSRVKQVLADGILCSFMTFFSGT 347

Query: 224  VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVG 283
            VD F   +   T    + +   +++ AR++FVD  ++ V LTL P+LL + +  +  K+G
Sbjct: 348  VDCFQTGSVATTKGVASAFKVGQRMRARVIFVDAVAKRVCLTLLPHLLEHTSI-TLPKLG 406

Query: 284  DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL 343
             ++  + + RVD G G+ L +        AY  +S +++E V K+EKK+K G  V VR++
Sbjct: 407  KVFQTATIARVDAGQGVALSVSDGDDHIAAYAHVSQLSDERVEKVEKKFKIGRSVNVRVI 466

Query: 344  GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 403
            G R ++G+ +  LK+S      F+  ++ PGM+V G+V+AV+ +GAIV+   G+KALCP 
Sbjct: 467  GHRLMDGIVSVSLKSSVMAQPFFSLEELTPGMLVNGEVVAVEHYGAIVKLAEGIKALCPP 526

Query: 404  PHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDR 461
             H+S+        K   GA+L FRVL V   S+R TV+HK+TL+KS+L +++S  +A   
Sbjct: 527  LHVSDIVGRTTSSKVSPGAKLKFRVLNVDKNSRRATVSHKRTLIKSELPVIASLEDALPG 586

Query: 462  LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 521
             +THG +T + ++G F+  Y  ++G A  ++LGL    +PS  + VGQVV+  I+S+  A
Sbjct: 587  AVTHGVVTGVNEYGVFISLYGDLRGLANVNDLGLLSDQKPSDAFGVGQVVRVTIVSA-DA 645

Query: 522  SRRINLS-------------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 568
            S R+ LS              M+  +       + + + V   V   T N  VV+   KG
Sbjct: 646  SGRLRLSLAAGVALEAKTPGLMINASAADLTPGIIVETAVVTHVSAQTGNVEVVFTAEKG 705

Query: 569  YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--Q 626
               G I   HL+DH   AT + SV+ PG +   L+VL+ + +  +LS K SL+ S+Q  +
Sbjct: 706  NVPGIIALAHLSDHPLTATGLSSVLNPGDKIGPLVVLEGKPTRAVLSRKLSLVESSQNSK 765

Query: 627  LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 686
            LP+ A    P SV  GYV +    G FVRFLG+LTG AP S+ VDG  AD+   + VG++
Sbjct: 766  LPASAEEATPGSVFPGYVASATSAGVFVRFLGKLTGLAPPSQLVDGVSADIHDMFPVGKT 825

Query: 687  VRSNILDVNSETG--RITLSLKQSCCSS--TDASFMQEHF----LLEEKIAMLQSSKHNG 738
            V + +L V++ T   R++LSLK S  SS  +DA  ++  F    LL+E++A   ++   G
Sbjct: 826  VNALVLAVDTSTSPPRLSLSLKLSATSSPLSDAPLIRSFFNDIELLDERVA---NADDVG 882

Query: 739  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT-VESGSVIQA 797
               +  +    G+ ++  V+E+ ++GV++     S+  G +T HQL  +   ESG  ++ 
Sbjct: 883  ISPETAKSLQPGTWMDVTVNETKEYGVLMDMAIDSNAVGLVTPHQLPESVEFESGDAVKC 942

Query: 798  AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 857
             +LDV++ E +VD+ +++  ++RF+    N+ A  K  KR     L V   V A VE+VK
Sbjct: 943  YVLDVSRREGVVDMGMRS-GLERFKR---NKTASGKSLKR-----LKVGDEVTADVELVK 993

Query: 858  ENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL 916
              Y V SLP+++  IGYASV   N + +   ++F   Q V A V  LP  +  GRLLL +
Sbjct: 994  AEYAVFSLPDHSGLIGYASVHHLNRSYEDATQRFTPAQRVKAIVAQLPDGAN-GRLLLTV 1052

Query: 917  KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 976
                   T SS   K       G+LV+  ++EI+PL+  +       GR++I+E +  + 
Sbjct: 1053 PV-----TISSSGGK----IAAGTLVKGVVSEIQPLQALVALPNNARGRLYISEFDLTE- 1102

Query: 977  NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV 1036
               E   ++  +G T+ A ++  +     ++  L +LS+            K  F    V
Sbjct: 1103 ---EKPLASVSVGSTIEATVLGLAG----ERGGLLDLSVH----------RKSAFSLDGV 1145

Query: 1037 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHV 1095
            S+G  +  YV  +  +   +T++  + + +  ++++ + SEL E  + RF IG+ V    
Sbjct: 1146 SVGDSLNAYVLSITQDGLKVTVAPGVTSFIPKIETSDKASELSESLETRFVIGQRVRATA 1205

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV---GGL 1152
            + I   K+ + L LR                    F      VG ++  I++ V    G+
Sbjct: 1206 VDIKLNKRRIDLTLR----------------TESVFGSNKVCVGAKLHGIVTRVVKHAGV 1249

Query: 1153 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1212
            +VQIG H +GR+H T+L            DE + +P + Y  G  V+ +VL +S     +
Sbjct: 1250 MVQIGSHSFGRIHLTDLS-----------DELKEEPSASYAAGAVVQVRVLNVSP----S 1294

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
              ++LS R+S   MSS   + L  D +     ++ + +L P   ++GYVK  T KGCF+ 
Sbjct: 1295 GEIDLSTRASR--MSS--KTILPEDAE-----VQDVANLVPGQRIKGYVKATTKKGCFVA 1345

Query: 1273 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1332
            LSR +DA   LSNL+D ++  P   FP GKLV GR++S +    RVE++L+  ++ +   
Sbjct: 1346 LSRSIDAMCKLSNLADDFIADPIASFPPGKLVQGRIVSADAAKGRVEISLRERENSSQGN 1405

Query: 1333 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-DNIETIYRA 1391
            +++   S + VG +++G ++RV+ YG+FI ++ T L GLCH+S  ++  + D++    R 
Sbjct: 1406 ADV---SGVDVGSVMMGTVRRVQPYGVFIGLDGTKLSGLCHISMFADARINDDLSLHVRQ 1462

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYF 1418
            GE+V+VK+L+++ E ++ISLG K+S F
Sbjct: 1463 GERVRVKVLEINAETKKISLGCKASLF 1489



 Score =  313 bits (803), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 156/324 (48%), Positives = 217/324 (66%), Gaps = 20/324 (6%)

Query: 1485 VNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA- 1543
            VN+D + PD             +AK + ++     KK+ KE +E EI   E+ L + DA 
Sbjct: 1636 VNVDSDNPD-------------DAKPLSKRE----KKRLKEAKELEILQKEQALRDGDAV 1678

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P +  EFE+L+ +SP SSF+W++YMAF +S     +AR +AERA+  I   EE E++NIW
Sbjct: 1679 PESAMEFEKLLIASPRSSFLWVRYMAFHVSCGAYAEAREVAERAIVAIPASEETERMNIW 1738

Query: 1604 VAYFNLENEYGNP-PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1662
             AY NLEN+YG P PEEAV K+F RA+Q  + K +H+ L+ +YER  Q +  ++ L K  
Sbjct: 1739 AAYLNLENKYGTPTPEEAVKKLFTRAVQLSNAKHLHMTLISMYERNGQQQSLEDALKKAA 1798

Query: 1663 KKFKHSCKVWLRRVQR-LLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            KKF +S KVWL  ++  +LK   E  + ++ RA  +LP+HKHIK + +TA+ E K G  +
Sbjct: 1799 KKFSYSTKVWLAYIRAAVLKGNSEWARQLLDRATQALPKHKHIKILMRTALFEMKEGNPE 1858

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            RGR+MFEGIL  YP+RTD+WS+Y+DQEI+ GDV  IR LFERA  L L  K MKFLFK+Y
Sbjct: 1859 RGRTMFEGILRNYPRRTDIWSVYIDQEIKQGDVLRIRALFERATHLDLNAKSMKFLFKRY 1918

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYV 1805
            L++E+S G++ERI +VKQ+AMEYV
Sbjct: 1919 LDFERSEGDDERIAHVKQRAMEYV 1942


>gi|301097567|ref|XP_002897878.1| rRNA biogenesis protein rrp5 [Phytophthora infestans T30-4]
 gi|262106626|gb|EEY64678.1| rRNA biogenesis protein rrp5 [Phytophthora infestans T30-4]
          Length = 1882

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/1921 (30%), Positives = 941/1921 (48%), Gaps = 243/1921 (12%)

Query: 9    GMKLWGVVAEVNE-KDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQL 67
            GM L G V ++ + +DL+I LP  L G      AL+   D+           T+F VGQ 
Sbjct: 85   GMLLLGCVRQITDGQDLMISLPNKLNGTV----ALNECSDD-----------TLFKVGQF 129

Query: 68   VSCIVLQLDDDKKEIGKRK-IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 126
            V C+VL       + GKRK I LSLR SLL+  LS  ++ +G  L A V S+EDHG I++
Sbjct: 130  VPCVVLATG----KTGKRKQIHLSLRTSLLHAELSPGSLTKGTSLHATVSSVEDHGAIVN 185

Query: 127  FGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL 186
             G+     F+PR  L   +    K   LL  VV S++       ++ D   V K VT+  
Sbjct: 186  LGIRGVHAFVPRKELTTPAH---KGQHLLVNVV-SMNMHTNTATVTIDRSQVVKAVTRG- 240

Query: 187  KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT-NWKNDYNQH 245
               ++  LVPGM+++ RV+ +LENG+ ++FL++F+ TV+  H+  + P    W+  Y + 
Sbjct: 241  DSFTLKQLVPGMLLNVRVEDVLENGLSVTFLSFFSATVEQNHM--SLPCERGWEESYRKG 298

Query: 246  KKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIP 305
             K  ARI+ +D  ++ + L++ P+++H + P S    GDI +++ + R+D G+G+LL + 
Sbjct: 299  MKARARIVSIDYIAKQITLSMAPHVVHLQVPESLFSAGDIIEEATIERIDVGIGMLLSLK 358

Query: 306  ST---------------------PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 344
            S                          P YV IS+V+++ V KLEKK+  GS ++ R+LG
Sbjct: 359  SQDEDVDMEDASDKKENTTNAKWKAFAPGYVHISNVSDKRVDKLEKKFTVGSSIKCRVLG 418

Query: 345  FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
            F   + +A+      +    V  H D+KPG  V GK+++V+S+G +++   GV+ L    
Sbjct: 419  FSPFDAVASVSCTEHSISQTVLRHKDLKPGTKVNGKILSVESWGILMEISEGVRGLVTSQ 478

Query: 405  HMSEFEIVKPGK--KFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATD 460
            HM  F + K     K+K G     RVL V   + +  +T K  L+ S L +LSS+ EAT 
Sbjct: 479  HMPAFLLNKKANSGKYKAGKTTSARVLHVDLDANKTYLTMKSGLLSSDLPVLSSFKEATM 538

Query: 461  RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQVVKCRIMSSI 519
             LI HG+ITKI ++G  V FYN V G  P + L    G E     Y  GQVVK R+    
Sbjct: 539  GLIAHGFITKIGEYGVIVTFYNNVYGLVPMAVLQ-QAGIENLEEAYVPGQVVKARVTRCD 597

Query: 520  PASRRINLSFMM-------KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 572
               +R+ LSF         KPT   E     +G+ ++ V  +   +     V  K   +G
Sbjct: 598  ANRKRLMLSFDTTSNSSGNKPTAAPEIASKLVGTKITNV-KITDVDTTCFRVQTKDGMEG 656

Query: 573  TIPTEHLADHLEHATVMKSVIKPGYEFD----QLLVLDNESSN-LLLSAKYSLINSAQQ- 626
             +P   L D   + +++  ++K     D     LLV+  ES   L+LS K  L+  A + 
Sbjct: 657  VLPFVQLTDFPRNTSLVDKIVKRFSAGDVISEPLLVVSQESDGVLMLSKKPLLLEFASRK 716

Query: 627  --LPSDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPRS---KAVDGQRADLSKT 680
              LP     +  N+V+ GYV ++ +  G FV+FL  L   AP+    +   GQ  +  + 
Sbjct: 717  AILPRTFRDVQENAVLIGYVTSVNVSKGVFVKFLNNLVAVAPKGFLKEQFVGQIDE--EM 774

Query: 681  YYVGQSVRSNILDVNSETGRITLSLKQS-------CCSSTDASFMQEHFLLEEKIAMLQS 733
            + +G++V  ++  ++ E  +  +  +QS         +    +F Q +  L E     Q+
Sbjct: 775  FEIGETVTCSVAKMDKEKKQFVVGFQQSNFVLPTNSTNKARPAFFQAY--LRE-----QA 827

Query: 734  SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAGATVESG 792
            S  N +E+K    F +G   + +      +G V + E +   V   +          + G
Sbjct: 828  SVRNAAEVK-KSPFALGKSEKTEFVGVRPYGAVFALETDEETVTVLVPSVTEKNNEWDEG 886

Query: 793  SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 852
              ++  + D        D S K V+     E+     ++K +++++  K  G       +
Sbjct: 887  DTVKLLLTDY-------DFS-KNVYYGAADESLVKSGSKKSRKQKQRVKTGGKIAAATVL 938

Query: 853  VEIVKENYLVLSLPEYNHS----IGYASVSDY--NTQKFPQKQFLNGQSVIATVM----- 901
                 E Y V+S P+  ++     G   + D+   +Q   Q     G S+   V+     
Sbjct: 939  AVSPTEKYAVVSFPDPQNADLLQFGVVQLCDFWCPSQTSSQLGIEVGASIECRVVQPSLK 998

Query: 902  ----ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD-----VGSLVQAEITEI--K 950
                + P    A   L   + +++T+ SS K + K   Y      +G+++   I+ I   
Sbjct: 999  SVSNSTPFDDLALLALEEEELVAKTKASSRKTSSKVPKYTQEDLVLGNILTGVISGISEN 1058

Query: 951  PLELRL---KFGIGFHGRIHITEVN--DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1005
             +E+R+   K        + I +VN  D+KS    + F  + +  TVT R+IA S K   
Sbjct: 1059 SMEIRVETHKKAGKVRATVSIVDVNGIDEKSGH-SHPFDRYSVNTTVTGRVIAVSAKGAN 1117

Query: 1006 K----------KSFLWELS------------------IKPSMLTVSEIGSKLLFEECDVS 1037
            K          K    +LS                  ++P  L  S  G  LL E     
Sbjct: 1118 KLKPVSEENPAKFHALQLSLRSEDVAGDEKVEDVQRFVRPDWLEGSA-GRALLKE----- 1171

Query: 1038 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1097
             G  V G V   D +   + +S ++   L  ++ + +   ++EFQ ++ +GK V   VL 
Sbjct: 1172 -GNSVEGVVSDQDADHLTVKLSGNVTGTLSCVEVSEDVDVVREFQGKYPVGKRVKCFVLQ 1230

Query: 1098 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV--GGLVVQ 1155
            ++ EKK + L +           +  S+   Q  +  G IV G IS   S +    ++VQ
Sbjct: 1231 VDDEKKTVDLSV-----------IHASSAQSQAVVKSGTIVNGVISTKKSAIRPPSIMVQ 1279

Query: 1156 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1215
            IG H +GRV  TEL+    +D L          L  +  G+ V+C VL  S       H+
Sbjct: 1280 IGVHTFGRVCITELQTKWENDMLE---------LPKFSVGKVVRCVVLSTSNN-----HI 1325

Query: 1216 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1275
            +LSLR   D + S  +           K   K  + +   +V   V   TS GCF+ + R
Sbjct: 1326 DLSLRE--DALDSPKAY---------AKKSSKSAERNVGDLVPAIVATTTSSGCFVRVDR 1374

Query: 1276 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1335
               A+V+L +LSD +V+ P+ +FP GKLVAGRV   +   + +E++LK S    +    +
Sbjct: 1375 HTTARVMLRDLSDDFVKDPQTQFPSGKLVAGRV--TKKSDRGLELSLKAS--VVSDDVSV 1430

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-IETIYRAGEK 1394
               S+L  G  V G I +V++YG+F+ IE T + GLCH+SE++++ V   ++ I+  G+ 
Sbjct: 1431 FKWSDLKEGLTVKGTITKVQTYGVFVRIEKTTISGLCHISEVADEKVTQPLDQIFSEGDY 1490

Query: 1395 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV 1454
            VK K+LKV  E RR+S G+K SYF+                         +  +++ S  
Sbjct: 1491 VKAKVLKV--EDRRVSFGLKPSYFEAPV----------------------KKPVIKRSKP 1526

Query: 1455 AVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEK 1514
            A  ++D+    G     +  E  ++  P+E + D     +   +          +  DE+
Sbjct: 1527 ATMEIDL----GDDESSSDDEEASNAAPVEFSWDGFSDVLSKKVDSKDDDDSSDEEDDEE 1582

Query: 1515 NNRHAKKKEKEEREQ--EIRAAEERLL--EKDAPRTPDEFERLVRSSPNSSFVWIKYMAF 1570
               ++ K  K+ R Q  E  A  E+ L   +D P++  ++ERL+  SP SS++WI++MAF
Sbjct: 1583 EAANSSKSSKKNRLQSDEWVALREKALASNEDVPQSASDYERLLAVSPQSSYLWIQFMAF 1642

Query: 1571 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1630
             +S+ D++ AR +A RA   ++ R+E EK+N+WVAY NLE+++G+  + + ++VF+ ALQ
Sbjct: 1643 HVSLTDIDLARDVAVRATSAVSFRDEKEKMNVWVAYLNLEHDFGD--DASFLRVFKSALQ 1700

Query: 1631 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA- 1689
               PK+V+L L+ LY R E+++   + L  M KKF+ S + W+R +Q L+ Q+Q    A 
Sbjct: 1701 VNHPKRVYLHLIDLYARAEEHEDVKQTLATMQKKFRTSKQTWIRSLQYLVGQKQFAEAAE 1760

Query: 1690 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1749
             +QR+L SL  HKH+  I +   L ++ G  D+ R++FEGIL+ YPKR DLW++YLD+EI
Sbjct: 1761 TLQRSLKSLAAHKHLPVILKYGQLLYEQGELDKARTIFEGILANYPKRMDLWNVYLDKEI 1820

Query: 1750 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
            + GDV L+R LFER +++    KKMKFLFKKYL++E+  G++E +E+VKQ A ++V S  
Sbjct: 1821 KFGDVALVRALFERLLAMEFSAKKMKFLFKKYLQFEQDQGDDEHVEHVKQLAKDFVASAA 1880

Query: 1810 A 1810
            A
Sbjct: 1881 A 1881


>gi|432113019|gb|ELK35597.1| Protein RRP5 like protein [Myotis davidii]
          Length = 1877

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/1894 (30%), Positives = 925/1894 (48%), Gaps = 191/1894 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANED----N 56
            +++  GM++ G V EVNE +LVI LP GL+G  +    +DA    L+ ++E  E      
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEISDAYTKKLNEQVEQEEPLKDLA 137

Query: 57   LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L   +K  GK+ + LSL    + K LS E ++ GM+LT  V 
Sbjct: 138  SLPELFSPGMLVRCVVSSLGITEK--GKKSVKLSLNPQNVNKVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  V++ +     VV L
Sbjct: 196  SLEDHGYLVDIGVGGARAFLPLQKAQEYIRQKNKGAKLKVGQYLHCVIKEVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL++FTG VD  HL+ 
Sbjct: 256  SIGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPLGLTLNFLSFFTGLVDFMHLEP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQ 288
                T + N     + V A +L V P +RAV L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACVLSVHPRTRAVRLSLRPVFLQPGRPLTQLSCQHLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
            + V       G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  APVQGFFSKAGATFRLKDGSL---AYARLSHLSDSKKTFNPEAFKPGNTHKCRIINYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D+KPG +VKG V+ +  +G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQFLGYHDIKPGALVKGTVLTIKPYGMLVKVSEQIRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTLV+SKL  ++ Y      L THG
Sbjct: 488  IPMKNPEKKYHIGDEVTCRVLLCDPEAKKLMMTLKKTLVESKLPAITCYDNTKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPEKVFYTGQVVKVAVLNCEPSKERML 607

Query: 527  LSFMM----KPTRVSEDD----LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
            LSF +    K   V +       V +G LV   V   T + + V V+        +PT H
Sbjct: 608  LSFRLLSDPKKEHVGQSQKKRKAVNVGQLVDVKVLEKTKDGLEVTVLPHNIP-AFLPTSH 666

Query: 579  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 636
            L+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S IHP
Sbjct: 667  LSDHVANGPLLHHWLQAGDTLHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKTFSEIHP 726

Query: 637  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              ++ G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ 
Sbjct: 727  GMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDE 786

Query: 697  ETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSV 752
            E  R+ LSL+ S C+  D +          LEE+  +     +  S L + +     G V
Sbjct: 787  EKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMV 846

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLV 809
            ++ +V E  + G VV F E   V G +   + +  AG  VESG   +A IL+V   +  V
Sbjct: 847  LDLEVQEVLEDGSVV-FSE-GPVPGLVLRASKYHRAGQEVESGQKKKAVILNVDMLKLEV 904

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    +        NR+A+K K+ RE       HQ   AIV+ ++E++ V SL E  
Sbjct: 905  HVSLCHDLV--------NRKAKKLKKGRE-------HQ---AIVQHLEESFAVASLVETG 946

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 947  HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRQT 1004

Query: 929  RA-------------------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
            R                    KKK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 1005 RKDSETVDEDDEGDPCMVVGFKKKHTLSIGDMVTGTVKSIKPTHVVVTLENGIIGCIHAS 1064

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKPSML 1020
             + DD         +  K+G+ VTAR+I     K++K  P     F+    ELS++PS+L
Sbjct: 1065 HILDDVPEGTSPT-ARLKVGKKVTARVIGGRDVKTSKFLPISHPRFIRTIPELSVRPSVL 1123

Query: 1021 ------TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSA 1072
                   ++      L +      GQ VT ++  Y V  +W  + I+  ++ ++ +L  +
Sbjct: 1124 EKDGHAALNTHSVSPLEKIKQYQAGQTVTCFLKKYNVIKKWLEVEIAPDIRGRIPMLLIS 1183

Query: 1073 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1132
                 L+   ++F IG+A+   V+  +  K  L L L             I    ++   
Sbjct: 1184 LSFKVLKHPDKKFQIGQALKATVVGPDSSKAFLCLSL-------------IGPHKLE--- 1227

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
             +G++  GR+ K+     GL V       GRV         VSD    Y E    PL  +
Sbjct: 1228 -KGEVAMGRVVKVTPN-KGLTVSFPFGRTGRVSI-----FHVSD---SYSEA---PLEDF 1274

Query: 1193 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
               + V+C VL  +  V     + LSLRSS         ++  T    P   +  I+D+ 
Sbjct: 1275 IPEKIVRCYVLSTADEV-----LTLSLRSS--------RTNPETKSKVPDPEINSIQDVQ 1321

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------EKEFPIGKLVAG 1306
               +++GYVK+V   G  + L   +   V L+        SP      E+  P GKL+  
Sbjct: 1322 EGQLLRGYVKSVQPHGVLLGLGPSV---VGLAQYPRVSRHSPLEKALYERYLPEGKLLTA 1378

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
            +VLSV      VE++   SD+        +  LS L  G+  +   +R          + 
Sbjct: 1379 KVLSVNHQKNLVELSFLPSDTGKPDVFPASPGLSPLKQGEKQVEVEERDHKGKEEKEKKK 1438

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
             N       ++  ++     E    + EK + +    +K+ +R      S   + +    
Sbjct: 1439 KNQKRKEQRNQKGQE-----EAQLPSKEKKEPQKPHAEKQGKRPHRESASEQERANKKQK 1493

Query: 1426 QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLE- 1484
            + +  EE D  +E               V  ++ + E ED   L   +    A VP L+ 
Sbjct: 1494 KAAPAEEDDSGVE---------------VYYREGEEEVEDISVLPKGKQTRPAEVPRLQL 1538

Query: 1485 -------VNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE--KEEREQEIRAAE 1535
                   V L+   P +      +    DE      +  +  K++E  K++ E+E+   E
Sbjct: 1539 SSGFVWDVGLESLTPALPPRRESSDSEEDEKPQQTTQKKKSKKERELEKQKAEKELSRME 1598

Query: 1536 ERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1594
            E L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ R
Sbjct: 1599 EALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFR 1658

Query: 1595 EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLA 1654
            EE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A
Sbjct: 1659 EEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLQLADIYTKSEKFQEA 1716

Query: 1655 DELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAIL 1713
             EL  +M+K+F+    VW++    LL++ Q G    V+QRAL  LP+ +H+  IS+ A L
Sbjct: 1717 GELYNRMLKRFRQEKAVWVKYGAFLLRRGQAGASHRVMQRALECLPQKEHVDVISKFAQL 1776

Query: 1714 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1773
            EF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+
Sbjct: 1777 EFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKR 1836

Query: 1774 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            MKF FK+YL+YEK  G E+ ++ VK KA++YVE+
Sbjct: 1837 MKFFFKRYLDYEKQHGTEKDVQAVKAKALDYVEA 1870


>gi|348680504|gb|EGZ20320.1| hypothetical protein PHYSODRAFT_490560 [Phytophthora sojae]
          Length = 1892

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/1934 (29%), Positives = 947/1934 (48%), Gaps = 251/1934 (12%)

Query: 4    QNISAGMKLWGVVAEVNE-KDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIF 62
            + +  GM L G V +V + +DL+I LP  L G    A+  D                +IF
Sbjct: 82   KTLRKGMLLLGCVRQVTDGQDLMISLPNKLNGTVALAECSDD---------------SIF 126

Query: 63   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
             VGQ V C+VL      K   +++I LSLR SLL+  LS+ ++ +G  L A V S+EDHG
Sbjct: 127  KVGQFVPCVVLATSKTDK---RKQIQLSLRTSLLHAELSVASLTKGASLHATVSSVEDHG 183

Query: 123  YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 182
             I++ G+     F+PR  LA      V  G  L   V S++       ++ D  TV K V
Sbjct: 184  AIVNLGIRGVHAFVPRKELAA----PVLKGQHLLVSVLSMNAHTNTATVTIDRSTVVKAV 239

Query: 183  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT-NWKND 241
            T+     ++  LVPGM+++ RV+ +LENG+ ++FLT+FT TV+  H+  + P    W+  
Sbjct: 240  TRG-DSFTLKQLVPGMLLNVRVEDVLENGLSVTFLTFFTATVEQNHM--SLPCERGWEES 296

Query: 242  YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 301
            + +  K  ARI+ +D  ++ + L++ P+++H + P S   VGDI +++ + R+D G+G+L
Sbjct: 297  FRKGMKARARIMSIDYIAKQITLSIAPHVVHMQVPDSPYSVGDIIEEATIERIDAGVGML 356

Query: 302  LDIPSTPVS------------------------TPAYVTISDVAEEEVRKLEKKYKEGSC 337
            L + S                             P YV IS+V+++ V KLEKKY  GS 
Sbjct: 357  LSLKSKTSQDEDVEMEDASEKKESTTNAKWKAFAPGYVHISNVSDKRVDKLEKKYTVGSS 416

Query: 338  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 397
            ++ R+LGF   + +     K SA    V  H D+ PG  V G +++V+S+G +++   GV
Sbjct: 417  IKCRVLGFSPFDAVVNISCKESALSQTVLRHKDLAPGTKVSGIILSVESWGILMEISEGV 476

Query: 398  KALCPLPHMSEFEIVKPGK---KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAIL 452
            + L    HM  F + K      K+KVG     RVL V  ++K+  +T K  L+ S+L +L
Sbjct: 477  RGLVNPQHMPAFLLNKKANNNGKYKVGKVASARVLHVDLEAKKTFLTMKSGLLASELPVL 536

Query: 453  SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQVV 511
            SS+ EA   LI HG+ITKI ++G  V FYN V G  P + L    G E     Y +GQVV
Sbjct: 537  SSFEEAKMDLIAHGYITKIAEYGVIVTFYNNVYGLVPMAVLQ-QAGIENLEEAYVIGQVV 595

Query: 512  KCRIMSSIPASRRINLSFMMKPTRVSEDDLVK-------LGSLVSGVVDVVTPNAVVVYV 564
            K R+    P+ +R+ LSF     +               +G  ++ V  +    A    V
Sbjct: 596  KARVTRCDPSKKRLMLSFDTTSNKSGNAPTAAPETAAELVGKTITNV-KITDVEATCFRV 654

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ----LLVLDNESSNLL-LSAKYS 619
                  +G +P   L D     +++  ++K     D     LLV+  ES  +L LS K  
Sbjct: 655  QTADGMEGVLPFVQLTDFPRQTSLVDEIVKGFSAGDMISEPLLVVAQESDGVLTLSKKPL 714

Query: 620  LINSAQQ---LPSDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPRSKAVDGQRA 675
            L+  A +   LP     +  N+V+ GYV ++ +  G FV+FL  L   AP+    +   +
Sbjct: 715  LLEFASRSAILPRTFGDVQENAVLIGYVTSVNVAKGVFVKFLNNLVAVAPKGFLKEEFVS 774

Query: 676  DLSKTYY-VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ-EHFLLEEKIAMLQS 733
            ++ +  + +G++V  ++  V+    +  +  KQ        +F+Q  +   + ++A  Q+
Sbjct: 775  EIEEGMFEIGETVTCSVESVDKAKKQFVVGFKQ-------GNFVQVTNATNKARLAYFQA 827

Query: 734  SKHNGSELKWVEGFIIGSVIEGKVHES-----NDFGVVVSFEEHSD-VYGFITHHQLAGA 787
                 + ++        S   GK  ++       +G V + E+  + V   +        
Sbjct: 828  YLREQAAVRSAAAAKKASFALGKTEKAEFVGVRPYGAVFALEKDEETVTVLVPSVTEKNN 887

Query: 788  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 847
              + G  ++  + D        D S K V+     E+     +++ +++++  K  G  +
Sbjct: 888  EWDEGDSVKLLLTDY-------DFS-KNVYYAAADESLVKSGSKRSRKQKQRVKAGGKIE 939

Query: 848  TVNAIVEIVKENYLVLSLPEYNHS----IGYASVSDY--NTQKFPQKQFLNGQSV----I 897
                +     E Y V+S P+  ++     G   + D+   +Q   Q     G SV    +
Sbjct: 940  AAKVVAVSPTEKYAVVSFPDAQNADLLHFGVVELCDFWCPSQTSGQLGIEVGASVECRVV 999

Query: 898  ATVMALPSSSTAGRLLLLL-----KAISETETSSSKRAKKKSSYDVGSL--------VQA 944
             + +   S+ST    L+LL     K +S+ +  + K A K   Y    L        V A
Sbjct: 1000 QSTLKSGSNSTPFDDLVLLALAEEKLVSKAKKDTRKSASKLPKYSPNDLTLGNTLTGVIA 1059

Query: 945  EITEIKPLELRLKFG--IG-FHGRIHITEVND-DKSNVVENLFSNFKIGQTVTARIIAKS 1000
             I+E   +E+R++ G  +G     + I +V+  D+     + F  + +   VT R+IA +
Sbjct: 1060 GISE-NSMEIRVETGKKVGKVRATVSIVDVDGIDEKYGHAHPFDKYSVNAAVTGRVIAVT 1118

Query: 1001 NK------PDMKKSFLWELSIKPSMLT--------VSEI-------------GSKLLFEE 1033
             K      P  K++     +I+ S+ T        V+++             G  LL E 
Sbjct: 1119 AKGANKLKPVSKENPATFHAIQLSLRTEDVAGDEKVTDVQRFVRPDWLEGSAGRALLKE- 1177

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1093
                 G  V G V     +   + +S ++   L  ++ + +   ++ FQ +F +GK V  
Sbjct: 1178 -----GNSVDGIVSDQGADQLTIKLSSNVTGTLSCVEVSEDVEVVRAFQDKFPVGKRVKC 1232

Query: 1094 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV--GG 1151
             VL ++ EKK + L L           +  S+   +  +  G I+ G ISK  S +    
Sbjct: 1233 FVLQVDDEKKTVDLSL-----------IHSSSAQDKAVVKPGSIINGVISKKKSAIRPPS 1281

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
            ++VQ+G H +GRV        CV++ L+ ++    + L  +  G+ V+C VL  +     
Sbjct: 1282 IMVQLGAHTFGRV--------CVTELLAKWENNMLE-LPQFAAGKVVRCVVLSNNNN--- 1329

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
              H++LSLR   D ++  N  + +     P +    + DL P +     V + ++ GCF+
Sbjct: 1330 --HIDLSLRK--DALA--NPKEYAKKTSKPAER--GVGDLVPAV-----VASTSTTGCFV 1376

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
             + R   A+V+L +LSD +V+ P++ FP GKLVAGRV   +   + +E++LK S    + 
Sbjct: 1377 RVDRHTTARVMLRDLSDDFVKDPQEHFPTGKLVAGRV--TKKSDRGLELSLKAS--VVSE 1432

Query: 1332 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-IETIYR 1390
               +   ++L  G  V G + +V++YG+F+ IE + + GLCH+SE++++ V   ++ I+ 
Sbjct: 1433 DVSVFKWNDLKEGLTVKGTVTKVQTYGVFVRIEKSTISGLCHISEVADEKVTQPLDQIFS 1492

Query: 1391 AGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLE 1450
             G+ VK K+LKVD   RR+S G+K SYF+ +                         +   
Sbjct: 1493 EGDYVKAKVLKVDG--RRVSFGLKPSYFEGET-----------------------PAKKP 1527

Query: 1451 NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKT 1510
             +    + + ME + G     ++ E  +   P+E + D        G S       EAK 
Sbjct: 1528 AAKKVAKPVAMEIDLGDDESSSEDEDASGAAPVEFSWD--------GFSNALNKKTEAKD 1579

Query: 1511 IDEKNN-----------RHAKKKEKEEREQEIRAAEERLLEK--DAPRTPDEFERLVRSS 1557
             DE ++           + +K K+   +  E  A  E+ L    + P++  ++ERL+  S
Sbjct: 1580 DDESSSEDEDDEEEEAAKSSKSKKNRLQSDEWVALREKALASSDEVPQSASDYERLLAVS 1639

Query: 1558 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1617
            P SS++WI+YMAF +S+ +V+ AR +A RA   ++ R+E EKLN+WVAY NLE+++G+  
Sbjct: 1640 PQSSYLWIQYMAFHISLTEVDLARDVAVRATSAVSFRDEKEKLNVWVAYMNLEHDFGD-- 1697

Query: 1618 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1677
            + + ++VF+ ALQ   PK+V+L L+ LY R ++++   + L  M KKF+ S + W+R +Q
Sbjct: 1698 DASFLRVFKSALQVNHPKRVYLHLVDLYARADEHEDVKQTLATMQKKFRTSKQTWIRSLQ 1757

Query: 1678 RLLKQQQEGVQA-VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1736
             L+ ++     A  +QR+L SL  HKH+  I +   L ++ G  D+ R++FEGIL+ YPK
Sbjct: 1758 YLVGEKLFAEAAETLQRSLKSLSAHKHLPVILKYGQLLYEQGELDKARTIFEGILANYPK 1817

Query: 1737 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1796
            R DLW++YLD+EI+ GDV L+R LFER +++    KKMKFLFKKY+++E+  G++E +E+
Sbjct: 1818 RMDLWNVYLDKEIKFGDVALVRALFERLLAMDFSAKKMKFLFKKYMQFEQDQGDDEHVEH 1877

Query: 1797 VKQKAMEYVESTLA 1810
            VKQ A ++V S  A
Sbjct: 1878 VKQLAKDFVASAAA 1891


>gi|431895473|gb|ELK04989.1| Protein RRP5 like protein [Pteropus alecto]
          Length = 2041

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/1920 (29%), Positives = 929/1920 (48%), Gaps = 244/1920 (12%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 243  ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVAQEEPLKDLV 302

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L   ++  GK+ + LSL    + K LS E ++ GM+LT  V 
Sbjct: 303  HLPELFSPGMLVRCVVSSLGITER--GKKSVKLSLNPKNVNKVLSAEALKPGMLLTGTVS 360

Query: 117  SIEDHGYILHFGLPSFTGFLPRN-----NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP       N  +N G  +K G  L  ++  +  +  VV L
Sbjct: 361  SLEDHGYLVDIGVGGARAFLPLQKAQEYNRQKNKGAKLKVGQYLNCIIEEVKGSGGVVTL 420

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S D   VS  +  + +  +++ L+PG++V  ++Q +   G+ L+FL++FTG VD  HL  
Sbjct: 421  SIDHSEVSTAIATEEQNWTLNNLLPGLVVKAQIQKVTPLGLTLNFLSFFTGLVDFMHLDP 480

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIY 286
                T     Y  ++ V A +L V P +R V L+L P  LH      R    H+  G + 
Sbjct: 481  KKAGT-----YCSNQAVRACVLCVHPRTRVVRLSLRPVFLHPGRSLTRLTCQHL--GAVL 533

Query: 287  DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 346
            D   V       G    +    +   AY  +S +++ +     + +K G+  + RI+ F 
Sbjct: 534  DDVPVQSFFNKAGATFRLKDGSL---AYARLSHLSDSKTVFSPEAFKPGNTHKCRIIDFS 590

Query: 347  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 406
             ++ LA   L+ S  E   F + D+KPG +VKG V+ +  +G +V     ++ L P  H+
Sbjct: 591  QMDELAVLSLRTSIIEAQYFRYHDIKPGALVKGTVLTIKPYGMLVNVGEQIRGLVPPMHL 650

Query: 407  SEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            ++ ++  P KK+ +G E+  RVL    ++K++ +T KKTLV+SKL  ++ YA+A   L T
Sbjct: 651  ADIQMKNPEKKYHIGDEVTCRVLLCDPEAKKLMITLKKTLVESKLPAITCYADAKPGLQT 710

Query: 465  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            HG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  PA  R
Sbjct: 711  HGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVAVLNCEPARER 770

Query: 525  INLSFMM--KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            + LSF +  +P +        +   V +G LV   V   T + + V V+        +PT
Sbjct: 771  MLLSFKLLGEPEKERAGHSQKKRKAVNIGQLVDVKVLEKTRDGLEVAVLPHNIP-AFLPT 829

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      ++L  K +L+++ +  Q P   S I
Sbjct: 830  SHLSDHVANGPLLYHWLQAGDTLHRVLCLSQSEGRIILCRKPALVSTMEGGQDPKSFSEI 889

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
             P  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 890  QPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAVMSDKFVTSTSDHFVEGQTVVAKVTNV 949

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHF---LLEE--KIAMLQSSKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C+  D +          LEE   +  L S++ +   ++ +     
Sbjct: 950  DEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEEWQGVRSLMSNR-DSVLIQTLAEMTP 1008

Query: 750  GSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAE 806
            G V++ +V E  + G V+ F E   V G +   + +  AG  VESG   +A IL+V   +
Sbjct: 1009 GMVLDLEVQEVLEDGSVI-FSE-GPVPGLVLRASKYHRAGQEVESGQKKKAVILNVDMLK 1066

Query: 807  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 866
              V +SL    +        NR+A+K K+  E       HQ   AIV+ ++E++ + SL 
Sbjct: 1067 LEVHVSLCHNLV--------NRKAKKLKKGSE-------HQ---AIVQHLEESFAIASLV 1108

Query: 867  EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 925
            E  H   ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   
Sbjct: 1109 ETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRR 1168

Query: 926  SSKRAK-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 968
            + K ++                 KK +  +G +V   +  +KP  + +    G  G IH 
Sbjct: 1169 TQKDSETVDEDDEADPAMVVGTLKKHTLSIGDMVTGTVKSVKPTHVVVTLKDGIIGCIHA 1228

Query: 969  TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIK 1016
            + + DD   V     +  K+G+TVTAR+I      DMK   FL            ELS++
Sbjct: 1229 SHILDD-VPVGTCPTAKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVR 1284

Query: 1017 PSML-----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFI 1068
            PS L     T     S    E+      GQ VT ++  Y V  +W  + ++  ++ ++ I
Sbjct: 1285 PSELEKDGHTALNTHSVSPSEKIKQYQAGQTVTCFLKKYNVVKKWLEVEVAPDIRGRIPI 1344

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            L ++     L+   ++F IG+A+   V+  +  K  L L L             I    +
Sbjct: 1345 LLTSLSFKVLKHPDKKFQIGQALKATVVGPDSSKAFLCLSL-------------IGPHKL 1391

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS-------GY 1181
            +    +G++  GR+ K+                     T  K + VS P         G 
Sbjct: 1392 E----KGEVAMGRVVKV---------------------TPKKGLTVSFPFGKIGTLWRGS 1426

Query: 1182 DEGQFDPLSGYDEGQFV-----KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1236
                  P     +  F+     +C VL  +  V     + LSLRSS         ++  T
Sbjct: 1427 QGPLLSPEMLKSQCFFLFCCHSRCYVLSTAGHV-----LTLSLRSS--------RTNPET 1473

Query: 1237 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1296
                P   +  I+D+    +++GYVK+V   G  + L   +   V L+        SP K
Sbjct: 1474 KSKIPDPEINSIQDIEEGQLLRGYVKSVEPHGVLLGLGPSV---VGLAQYPHVSQYSPSK 1530

Query: 1297 E------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ 1350
            +       P GKL+  +VLSV      VE++    D+                 D+    
Sbjct: 1531 KTLYNRHLPEGKLLTAKVLSVSHQKNLVELSFLPGDTGRP--------------DVFPA- 1575

Query: 1351 IKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR-- 1408
                 S GL +  ++          +L  +  D+       GEK + K  +  KEK+   
Sbjct: 1576 -----SLGLPLLKQDER--------QLEAEERDH------KGEKKEQKKNQPRKEKKNQK 1616

Query: 1409 ------ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLE--NSSVAVQDMD 1460
                  +    KS   K  A         ES +  E +    +++  E  +S V V   +
Sbjct: 1617 GQEEEPLPSKEKSEPQKPRARKQGKRPRPESGKEQERMKKQKKAAPSEEDDSGVEVYYRE 1676

Query: 1461 MESEDGGSLVLAQIESR-ASVPPL--------EVNLDDEQPDMDNGISQNQGHTDE--AK 1509
             E E    ++LA+ ++R A VP L        +V LD   P +      +    DE   +
Sbjct: 1677 GEEETETRVLLAEKQTRPAEVPRLKLSSGFVWDVGLDSLTPALPPRGESSDSEEDEKSQQ 1736

Query: 1510 TIDEKNNRHAKKKEKEEREQEIRAAEERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYM 1568
               +K ++  ++ EK++ E+E+   EE L++ K  P + D+F+RLV SSPNSS +W++YM
Sbjct: 1737 ATQKKKSKKERELEKQKAEKELSRIEEALMDPKRQPESADDFDRLVLSSPNSSILWLQYM 1796

Query: 1569 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1628
            AF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA
Sbjct: 1797 AFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERA 1854

Query: 1629 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGV 1687
            +QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q E  
Sbjct: 1855 VQYNEPLKVFLQLADIYTKSEKFQEASELYNRMLKRFRQEKTVWIKYGAFLLRRGQAEAS 1914

Query: 1688 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1747
              V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D 
Sbjct: 1915 HRVMQRALECLPNKEHVDVIAKFAQLEFQLGDAERAKALFENTLSIYPKRTDVWSVYIDM 1974

Query: 1748 EIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1975 TIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQSVKAKALEYVEA 2034


>gi|426366071|ref|XP_004050088.1| PREDICTED: protein RRP5 homolog [Gorilla gorilla gorilla]
          Length = 1871

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/1900 (29%), Positives = 912/1900 (48%), Gaps = 209/1900 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            H   ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HAGMLLTGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     
Sbjct: 787  DEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAKMTP 845

Query: 750  GSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  
Sbjct: 846  GMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQKVESGQKKKVVILNVDLLKLE 905

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
            V +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E 
Sbjct: 906  VHVSLHQDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVET 947

Query: 869  NHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
             H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T   
Sbjct: 948  GHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRP 1005

Query: 928  KRAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 968
             R                     KK +  +G +V   +  IKP  + +    G  G IH 
Sbjct: 1006 TRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHA 1065

Query: 969  TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSI 1015
            + + DD      +  +  K+G+ VTAR+I      DM K+F +             ELS+
Sbjct: 1066 SHILDDVPEGT-SATTKLKVGKMVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSV 1120

Query: 1016 KPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFI 1068
            +PS L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +
Sbjct: 1121 RPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPL 1180

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDN 1127
            L ++     L+   ++F +G+A+   V+  +  K  L L L  P +              
Sbjct: 1181 LLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTGPHK-------------- 1226

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
                + EG++  GR+ K+    G         L     F ++  + +      Y E    
Sbjct: 1227 ----LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---T 1270

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
            PL  +   + V+C VL  +  V     + LSLR      SS  + +  + V+ P   +  
Sbjct: 1271 PLEDFVPQKVVRCYVLSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINS 1317

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIG 1301
            I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+       P G
Sbjct: 1318 IQDIKEGQLLRGYVGSIRPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEG 1374

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDS---RTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
            KL+  RVL +      VE++    D+      S S    L+    G     +  +     
Sbjct: 1375 KLLTARVLRLNHQKNLVELSFLPGDTGKPDVLSASLEGPLTKQEEGKTEAEERDQKGEKK 1434

Query: 1359 LFITIENTNLVGLCHVSELSED--HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
                 E  N  G   V   S++       +   R G + +    +   E+ R+S   K +
Sbjct: 1435 NQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKPKKA 1490

Query: 1417 YFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIES 1476
                + D+L      E  E  EE    ++    E  +   +   ++   G +  +     
Sbjct: 1491 SLSEEDDSLVDVYYREGKEEAEETNVLSK----EKQTKPAEAPRLQLSSGFAWNVGLDSL 1546

Query: 1477 RASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEE 1536
              ++PPL  + D E+                    DEK ++  KKK K+ERE E + AE+
Sbjct: 1547 TPALPPLAESSDSEE--------------------DEKPHQAMKKKSKKERELEKQKAEK 1586

Query: 1537 RLLEKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1588
             L   +         P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL
Sbjct: 1587 ELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERAL 1646

Query: 1589 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1648
            +TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++
Sbjct: 1647 KTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKS 1704

Query: 1649 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFI 1707
            E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I
Sbjct: 1705 EKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVI 1764

Query: 1708 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1767
            ++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +RG+FER I L
Sbjct: 1765 AKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRGIFERVIHL 1824

Query: 1768 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            SL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1825 SLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|119570024|gb|EAW49639.1| programmed cell death 11, isoform CRA_a [Homo sapiens]
          Length = 1872

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/1896 (29%), Positives = 919/1896 (48%), Gaps = 200/1896 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     
Sbjct: 787  DEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTP 845

Query: 750  GSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  
Sbjct: 846  GMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLE 905

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
            V +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E 
Sbjct: 906  VHVSLHQDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVET 947

Query: 869  NHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
             H   ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   + 
Sbjct: 948  GHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQ 1007

Query: 928  KRAK-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
            K ++                 KK +  +G +V   +  IKP  + +    G  G IH + 
Sbjct: 1008 KDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASH 1067

Query: 971  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKP 1017
            + DD         +  K+G+TVTAR+I      DM K+F +             ELS++P
Sbjct: 1068 ILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRP 1122

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1123 SELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1182

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQ 1129
            ++     L+   ++F +G+A+   V+  +  K LL L L  P +                
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHK---------------- 1226

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
              + EG++  GR+ K+    G         L     F ++  + +      Y E    PL
Sbjct: 1227 --LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPL 1272

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
              +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+
Sbjct: 1273 EDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQ 1319

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKL 1303
            D+    +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL
Sbjct: 1320 DIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKL 1376

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            +  RVL +      VE++    D+      + + LS    G +   + ++ E+       
Sbjct: 1377 LTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEERDQKG 1431

Query: 1364 ENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
            E  N       ++  ++ V+            +   R G + +    +   E+ R+S   
Sbjct: 1432 EKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKP 1487

Query: 1414 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQ 1473
            K +    + D+L      E  E  EE     +    E  +   +   ++   G +  +  
Sbjct: 1488 KKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGL 1543

Query: 1474 IESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRA 1533
                 ++PPL  + D E+ +  +  +Q             K ++  ++ EK++ E+E+  
Sbjct: 1544 DSLTPALPPLAESSDSEEDEKPHQATQI------------KKSKKERELEKQKAEKELSR 1591

Query: 1534 AEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1592
             EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+
Sbjct: 1592 IEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTIS 1651

Query: 1593 IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1652
             REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ +
Sbjct: 1652 FREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQ 1709

Query: 1653 LADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTA 1711
             A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I++ A
Sbjct: 1710 EAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFA 1769

Query: 1712 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1771
             LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL P
Sbjct: 1770 QLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAP 1829

Query: 1772 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            K+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1830 KRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1865


>gi|410251480|gb|JAA13707.1| programmed cell death 11 [Pan troglodytes]
 gi|410295644|gb|JAA26422.1| programmed cell death 11 [Pan troglodytes]
          Length = 1871

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/1905 (29%), Positives = 915/1905 (48%), Gaps = 219/1905 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  RVQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEQQSWNLNNLLPGLVVKARVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVINCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     +  G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINTGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     
Sbjct: 787  DEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTP 845

Query: 750  GSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  
Sbjct: 846  GMFLDLVVREVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLE 905

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
            V +SL    +        NR+A+K ++  E       HQ   A+V+ +++++ + SL E 
Sbjct: 906  VHVSLHQDLV--------NRKARKLRKGSE-------HQ---AVVQHLEKSFAIASLVET 947

Query: 869  NHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
             H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T   
Sbjct: 948  GHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRP 1005

Query: 928  KRAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 968
             R                     KK +  +G +V   +  IKP  + +    G  G IH 
Sbjct: 1006 TRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHA 1065

Query: 969  TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSI 1015
            + + DD         +  K+G+TVTAR+I      DM K+F +             ELS+
Sbjct: 1066 SHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSV 1120

Query: 1016 KPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFI 1068
            +PS L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +
Sbjct: 1121 RPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPL 1180

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDN 1127
            L ++     L+   ++F +G+A+   V+  +  K  L L L  P +              
Sbjct: 1181 LLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTGPHK-------------- 1226

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
                + EG++  GR+ K+    G         L     F ++  + +      Y E    
Sbjct: 1227 ----LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---T 1270

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
            PL  +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  
Sbjct: 1271 PLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINS 1317

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIG 1301
            I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+       P G
Sbjct: 1318 IQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKTLYNKHLPEG 1374

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            KL+  RVL +      VE++    D+      + + LS    G +   + ++ E+     
Sbjct: 1375 KLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEKRDQ 1429

Query: 1362 TIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISL 1411
              E  N       ++  ++ V+            +   R G++ +    +   E+ R+S 
Sbjct: 1430 KGEKKNQKRNEKKNQKGQEEVEMPSKEEQQPQKPQAQKRGGQECR----ESGSEQERVSK 1485

Query: 1412 GMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL 1471
              K +    + D+L      E  E  EE     +    E  +   +   ++   G +  +
Sbjct: 1486 KPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNV 1541

Query: 1472 AQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEI 1531
                   ++PPL  + D E+                    DEK ++   KK K+ERE E 
Sbjct: 1542 GLDSLTPALPPLAESSDSEE--------------------DEKPHQATIKKSKKERELEK 1581

Query: 1532 RAAEERLLEKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1583
            + AE+ L   +         P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1582 QKAEKELSRIEEALMDPGWQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1641

Query: 1584 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1643
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1642 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1699

Query: 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1702
            +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +
Sbjct: 1700 IYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKE 1759

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
            H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1760 HVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFE 1819

Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1820 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|70980549|ref|NP_055791.1| protein RRP5 homolog [Homo sapiens]
 gi|145559523|sp|Q14690.3|RRP5_HUMAN RecName: Full=Protein RRP5 homolog; AltName: Full=NF-kappa-B-binding
            protein; Short=NFBP; AltName: Full=Programmed cell death
            protein 11
 gi|119570026|gb|EAW49641.1| programmed cell death 11, isoform CRA_c [Homo sapiens]
 gi|225000512|gb|AAI72442.1| Programmed cell death 11 [synthetic construct]
          Length = 1871

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1896 (29%), Positives = 919/1896 (48%), Gaps = 201/1896 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     
Sbjct: 787  DEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTP 845

Query: 750  GSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  
Sbjct: 846  GMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLE 905

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
            V +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E 
Sbjct: 906  VHVSLHQDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVET 947

Query: 869  NHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
             H   ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   + 
Sbjct: 948  GHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQ 1007

Query: 928  KRAK-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
            K ++                 KK +  +G +V   +  IKP  + +    G  G IH + 
Sbjct: 1008 KDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASH 1067

Query: 971  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKP 1017
            + DD         +  K+G+TVTAR+I      DM K+F +             ELS++P
Sbjct: 1068 ILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRP 1122

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1123 SELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1182

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQ 1129
            ++     L+   ++F +G+A+   V+  +  K LL L L  P +                
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHK---------------- 1226

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
              + EG++  GR+ K+    G         L     F ++  + +      Y E    PL
Sbjct: 1227 --LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPL 1272

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
              +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+
Sbjct: 1273 EDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQ 1319

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKL 1303
            D+    +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL
Sbjct: 1320 DIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKL 1376

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            +  RVL +      VE++    D+      + + LS    G +   + ++ E+       
Sbjct: 1377 LTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEERDQKG 1431

Query: 1364 ENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
            E  N       ++  ++ V+            +   R G + +    +   E+ R+S   
Sbjct: 1432 EKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKP 1487

Query: 1414 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQ 1473
            K +    + D+L      E  E  EE     +    E  +   +   ++   G +  +  
Sbjct: 1488 KKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGL 1543

Query: 1474 IESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRA 1533
                 ++PPL  + D E+ +  +             TI  K ++  ++ EK++ E+E+  
Sbjct: 1544 DSLTPALPPLAESSDSEEDEKPH-----------QATI--KKSKKERELEKQKAEKELSR 1590

Query: 1534 AEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1592
             EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+
Sbjct: 1591 IEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTIS 1650

Query: 1593 IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1652
             REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ +
Sbjct: 1651 FREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQ 1708

Query: 1653 LADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTA 1711
             A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I++ A
Sbjct: 1709 EAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFA 1768

Query: 1712 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1771
             LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL P
Sbjct: 1769 QLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAP 1828

Query: 1772 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            K+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1829 KRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|1136430|dbj|BAA11502.1| KIAA0185 [Homo sapiens]
          Length = 1884

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/1903 (29%), Positives = 916/1903 (48%), Gaps = 215/1903 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 91   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 150

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 151  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 208

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 209  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 268

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 269  SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 328

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 329  KKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDD 383

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 384  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 440

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 441  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 500

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 501  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 560

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 561  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 620

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 621  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 679

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S I
Sbjct: 680  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEI 739

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 740  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 799

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     
Sbjct: 800  DEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTP 858

Query: 750  GSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  
Sbjct: 859  GMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLE 918

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
            V +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E 
Sbjct: 919  VHVSLHQDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVET 960

Query: 869  NHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
             H   ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   + 
Sbjct: 961  GHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQ 1020

Query: 928  KRAK-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
            K ++                 KK +  +G +V   +  IKP  + +    G  G IH + 
Sbjct: 1021 KDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASH 1080

Query: 971  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKP 1017
            + DD         +  K+G+TVTAR+I      DM K+F +             ELS++P
Sbjct: 1081 ILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRP 1135

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1136 SELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1195

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQ 1129
            ++     L+   ++F +G+A+   V+  +  K  L L L  P +                
Sbjct: 1196 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTGPHK---------------- 1239

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
              + EG++  GR+ K+     GL V           F ++  + +      Y E    PL
Sbjct: 1240 --LEEGEVAMGRVVKVTPN-EGLTVSFP--------FGKIGTVSIFHMSDSYSE---TPL 1285

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
              +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+
Sbjct: 1286 EDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQ 1332

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKL 1303
            D+    +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL
Sbjct: 1333 DIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKL 1389

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            +  RVL +      VE++    D+      + + LS    G +   + ++ E+       
Sbjct: 1390 LTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEERDQKG 1444

Query: 1364 ENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
            E  N       ++  ++ V+            +   R G + +    +   E+ R+S   
Sbjct: 1445 EKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKP 1500

Query: 1414 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQ 1473
            K +    + D+L      E  E  EE     +    E  +   +   ++   G +  +  
Sbjct: 1501 KKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGL 1556

Query: 1474 IESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRA 1533
                 ++PPL  + D E+                    DEK ++   KK K+ERE E + 
Sbjct: 1557 DSLTPALPPLAESSDSEE--------------------DEKPHQATIKKSKKERELEKQK 1596

Query: 1534 AEERLLEKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1585
            AE+ L   +         P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AE
Sbjct: 1597 AEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAE 1656

Query: 1586 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1645
            RAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y
Sbjct: 1657 RALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIY 1714

Query: 1646 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHI 1704
             ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+
Sbjct: 1715 AKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHV 1774

Query: 1705 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1764
              I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER 
Sbjct: 1775 DVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERV 1834

Query: 1765 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1835 IHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1877


>gi|168272922|dbj|BAG10300.1| RRP5 protein homolog [synthetic construct]
          Length = 1871

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/1896 (29%), Positives = 918/1896 (48%), Gaps = 201/1896 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     
Sbjct: 787  DEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTP 845

Query: 750  GSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  
Sbjct: 846  GMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLE 905

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
            V +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E 
Sbjct: 906  VHVSLHQDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVET 947

Query: 869  NHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
             H   ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   + 
Sbjct: 948  GHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQ 1007

Query: 928  KRAK-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
            K ++                 KK +  +G +V   +  IKP  + +    G  G IH + 
Sbjct: 1008 KDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASH 1067

Query: 971  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKP 1017
            + DD         +  K+G+TVTAR+I      DM K+F +             ELS++P
Sbjct: 1068 ILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRP 1122

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1123 SELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1182

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQ 1129
            ++     L+   ++F +G+A+   V+  +  K  L L L  P +                
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTGPHK---------------- 1226

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
              + EG++  GR+ K+    G         L     F ++  + +      Y E    PL
Sbjct: 1227 --LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPL 1272

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
              +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+
Sbjct: 1273 EDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQ 1319

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKL 1303
            D+    +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL
Sbjct: 1320 DIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKL 1376

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            +  RVL +      VE++    D+      + + LS    G +   + ++ E+       
Sbjct: 1377 LTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEERDQKG 1431

Query: 1364 ENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
            E  N       ++  ++ V+            +   R G + +    +   E+ R+S   
Sbjct: 1432 EKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKP 1487

Query: 1414 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQ 1473
            K +    + D+L      E  E  EE     +    E  +   +   ++   G +  +  
Sbjct: 1488 KKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGL 1543

Query: 1474 IESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRA 1533
                 ++PPL  + D E+ +  +             TI  K ++  ++ EK++ E+E+  
Sbjct: 1544 DSLTPALPPLAESSDSEEDEKPH-----------QATI--KKSKKERELEKQKAEKELSR 1590

Query: 1534 AEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1592
             EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+
Sbjct: 1591 IEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTIS 1650

Query: 1593 IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1652
             REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ +
Sbjct: 1651 FREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQ 1708

Query: 1653 LADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTA 1711
             A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I++ A
Sbjct: 1709 EAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFA 1768

Query: 1712 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1771
             LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL P
Sbjct: 1769 QLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAP 1828

Query: 1772 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            K+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1829 KRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|332835295|ref|XP_508013.3| PREDICTED: protein RRP5 homolog [Pan troglodytes]
 gi|410355317|gb|JAA44262.1| programmed cell death 11 [Pan troglodytes]
          Length = 1871

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1905 (29%), Positives = 915/1905 (48%), Gaps = 219/1905 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVINCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     +  G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINTGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     
Sbjct: 787  DEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTP 845

Query: 750  GSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  
Sbjct: 846  GMFLDLVVREVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLE 905

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
            V +SL    +        NR+A+K ++  E       HQ   A+V+ +++++ + SL E 
Sbjct: 906  VHVSLHQDLV--------NRKARKLRKGSE-------HQ---AVVQHLEKSFAIASLVET 947

Query: 869  NHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
             H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T   
Sbjct: 948  GHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRP 1005

Query: 928  KRAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 968
             R                     KK +  +G +V   +  IKP  + +    G  G IH 
Sbjct: 1006 TRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHA 1065

Query: 969  TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSI 1015
            + + DD         +  K+G+TVTAR+I      DM K+F +             ELS+
Sbjct: 1066 SHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSV 1120

Query: 1016 KPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFI 1068
            +PS L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +
Sbjct: 1121 RPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPL 1180

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDN 1127
            L ++     L+   ++F +G+A+   V+  +  K  L L L  P +              
Sbjct: 1181 LLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTGPHK-------------- 1226

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
                + EG++  GR+ K+    G         L     F ++  + +      Y E    
Sbjct: 1227 ----LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---T 1270

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
            PL  +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  
Sbjct: 1271 PLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINS 1317

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIG 1301
            I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+       P G
Sbjct: 1318 IQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKTLYNKHLPEG 1374

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            KL+  RVL +      VE++    D+      + + LS    G +   + ++ E+     
Sbjct: 1375 KLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEKRDQ 1429

Query: 1362 TIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISL 1411
              E  N       ++  ++ V+            +   R G++ +    +   E+ R+S 
Sbjct: 1430 KGEKKNQKRNEKKNQKGQEEVEMPSKEEQQPQKPQAQKRGGQECR----ESGSEQERVSK 1485

Query: 1412 GMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL 1471
              K +    + D+L      E  E  EE     +    E  +   +   ++   G +  +
Sbjct: 1486 KPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNV 1541

Query: 1472 AQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEI 1531
                   ++PPL  + D E+                    DEK ++   KK K+ERE E 
Sbjct: 1542 GLDSLTPALPPLAESSDSEE--------------------DEKPHQATIKKSKKERELEK 1581

Query: 1532 RAAEERLLEKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1583
            + AE+ L   +         P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1582 QKAEKELSRIEEALMDPGWQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1641

Query: 1584 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1643
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1642 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1699

Query: 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1702
            +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +
Sbjct: 1700 IYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKE 1759

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
            H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1760 HVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFE 1819

Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1820 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|354500197|ref|XP_003512187.1| PREDICTED: protein RRP5 homolog [Cricetulus griseus]
 gi|344252409|gb|EGW08513.1| Protein RRP5-like [Cricetulus griseus]
          Length = 1870

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/1902 (29%), Positives = 920/1902 (48%), Gaps = 214/1902 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E+ L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTQKLNEQVTQEEPLEDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  LD  ++  GK+ + LS+    + K LS E ++  M+LT  V 
Sbjct: 138  RLPDLFSPGMLVRCVVSSLDITER--GKKSVKLSVNPKHVNKVLSAEALRPRMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FL  +   E     N G ++K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVSGTRAFLSLHKAQEYIRQKNKGANLKIGQYLTCLVDEVKSNGAVVGL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S +   +S     + +  +++ L+PG++V  +VQ + E G+ L+FLT+FTG VD  HL+ 
Sbjct: 256  SIEHSEISSAFATEEQSWNLNNLLPGLVVKAQVQKVTEFGLQLNFLTFFTGLVDFMHLE- 314

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                      Y+  + V A IL + P +R V L+L P  L    P + +   ++G + D+
Sbjct: 315  ----PKKIGAYSSKQTVKACILCIHPRTRVVRLSLRPVFLQPGRPLTRISYQQLGAVLDK 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K GS  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGAL---AYARLSHLSDSKKTFNPEAFKPGSTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S       ++ D+K G VVKG V+A+  FG +V+    ++ L P  H+ +
Sbjct: 428  DELALLSLRKSIITAQFLSYHDIKTGTVVKGTVLAIKPFGILVKVGEQMRGLVPSMHLGD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL+ SKL  +  Y +A   L THG
Sbjct: 488  IMMKNPEKKYHLGDEVKCRVLLCDPEAKKLIMTLKKTLITSKLPAIMCYEDAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
             I +++ +GC V+FYN VQG  P+ EL      +P  +++ GQVVK  +++S P+  R+ 
Sbjct: 548  VIIRVKSYGCIVKFYNSVQGLVPKHELSDQHIPDPEKVFYTGQVVKVAVLNSEPSKERLL 607

Query: 527  LSFMMKPTRVSEDD----------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +      ++D           V +G LV   V   T + + V ++    +   +PT
Sbjct: 608  LSFKLLSDSEPKNDSVEISQKKGRAVNIGQLVDVKVLEKTKDGLEVAILPHN-TPAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I
Sbjct: 667  PHLSDHVANGPLLHHWLQAGDTLHRVLCLSQGEKHILLCRKPALVSTVEGGQDPKSLSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
             P  ++ G+V +I + G FV+F   L G AP++   D      S  + VGQ+V + + +V
Sbjct: 727  QPGMLLIGFVKSIKDYGVFVQFPSGLNGLAPKAIMSDKFVTTPSDHFVVGQTVVAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S CS  D +      LL + +  LQ      S  +   ++ +     
Sbjct: 787  DEEKQRMLLSLRLSDCSLGDPA-STSFILLCQCLEELQGVRSLMSNQDSVLMQTLAEMTP 845

Query: 750  GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
            G V++  V E  + G VV      D+    + +  AG  V SG   +  +L V   +  V
Sbjct: 846  GMVLDVMVQEVLEDGSVVFSGHVPDLILKASRYHRAGQEVASGQKRRVVVLHVDMLKLEV 905

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL+   + R           K ++ R++S+  G       IV+ ++E++ V SL E  
Sbjct: 906  HVSLRQDLVHR-----------KARKLRKSSRHQG-------IVQHLEESFAVASLMETG 947

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK----------A 918
              + ++  S  N T  F  ++   GQ V  T+       T   L+L ++          A
Sbjct: 948  QLVAFSLTSHLNDTFHFDSEKLHVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTSTPA 1005

Query: 919  ISETETSSSK-----------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 967
              ++ET+  K           R KKK    +G  V   I  +K   + +    G  G IH
Sbjct: 1006 RRDSETADDKEEEEENSDLTVRTKKKHGLAIGDKVTGTIKSVKATHVVVTLEDGIIGCIH 1065

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSIKPS 1018
             + + DD   V  +  +  K+G+ VTAR+I     K++K  P     F   + ELSI+PS
Sbjct: 1066 ASRILDD-VPVGTSPTTTLKVGEKVTARVIGGRDLKTSKFLPISHPRFVLTILELSIRPS 1124

Query: 1019 ML-----TVSEIGSKLLFEECD-VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
             L     +     S+   E+ +    GQ VT +   Y    +W  + ++  ++ ++ +L 
Sbjct: 1125 ELKKDGYSALNTHSESPLEKTEQYQAGQTVTCFFKKYNAIKKWLEVDVAPDIRGRIPLLL 1184

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDISNDNMQ 1129
            ++     L+   + F +G+A+   V+  +  K  L L ++ P++                
Sbjct: 1185 TSLSFKVLKHPDKMFQVGQALRATVVGSDVPKAFLCLSLIGPYK---------------- 1228

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
              + +G+I  GR+  ++    GL +      +G+V    L    VSD    Y E     L
Sbjct: 1229 --LEQGEIAMGRVLSVVPN-KGLTISFP---FGKVGKVSL--FHVSD---SYSEAL---L 1274

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
              +   + V+C VL     V     + LSLR      SS  + +  + V+ P   +  I+
Sbjct: 1275 EDFFPQKIVRCYVLSTEHHV-----LTLSLR------SSRTNRETKSKVEDP--EINSIQ 1321

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-----FPIGKLV 1304
            D+    +++GYVK+V S G  + L   +      S++S      PEKE      P GKLV
Sbjct: 1322 DVKEGQLLRGYVKSVLSHGVLVELGPSVVGLAQYSHVSQ--CRPPEKELYDSYLPKGKLV 1379

Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
              +VL V P   +VE++L  SD+                               LF    
Sbjct: 1380 TAKVLRVNPERSQVELSLLPSDTGKPD---------------------------LFSASP 1412

Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1424
               L+         E+  +  +   R GE+ K +  K   +K +    + S   K    +
Sbjct: 1413 EPPLLN-------GEERKEGAKERVRKGEEKKSQKRKEKNQKGQEEAELSSQEKKESQRH 1465

Query: 1425 LQMSSEEESDEAIEEVGSYN----RSSLLENSSVAVQDMDMESED----GGSLVLAQIES 1476
             Q   + E  E + E    N    +S   E     V+    E ED     G L + +   
Sbjct: 1466 RQ--GKRERHEPVSEQERVNKRPKKSGTPEEDDSGVEVYYREGEDEMEQPGVLPMGKQTK 1523

Query: 1477 RASVPPLE--------VNLDDEQPDM-DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEER 1527
             A VP L+        V LD   P +   G S +    ++     +K  +  ++ EK++ 
Sbjct: 1524 PAEVPRLQLSSGFVWDVGLDSLTPALPPRGESSDSEEDEKPHQAKKKKGKKERELEKQKA 1583

Query: 1528 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1586
            E+E+   EE L++    P + D+F+RL  S+PNSS +W++YMAF L   ++EKAR++AER
Sbjct: 1584 EKELSRIEEALMDPGRQPESADDFDRLGLSTPNSSILWLQYMAFHLQATEIEKARAVAER 1643

Query: 1587 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1646
            AL+TI+ REE EKLN+WVA  NLEN YG+  +E+++KVF+RA+QY +P KV L L  +Y 
Sbjct: 1644 ALKTISFREEQEKLNVWVALLNLENMYGS--QESLMKVFERAVQYNEPLKVFLHLADIYT 1701

Query: 1647 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIK 1705
            ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +H+ 
Sbjct: 1702 KSEKFKEAGELYSRMLKRFRQEKAVWIKYGAFVLGRSQAGTSHRVLQRALECLPTKEHVD 1761

Query: 1706 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765
             IS+ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I
Sbjct: 1762 VISKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVI 1821

Query: 1766 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1822 HLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1863


>gi|119570025|gb|EAW49640.1| programmed cell death 11, isoform CRA_b [Homo sapiens]
          Length = 1872

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/1899 (28%), Positives = 916/1899 (48%), Gaps = 206/1899 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL-----PSDA 631
             HL+DH+ +  ++   ++ G    ++L L      ++     + I  A+++     P + 
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVV---SLTGICGAEEVEGGQDPKNF 723

Query: 632  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
            S IHP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + +
Sbjct: 724  SEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKV 783

Query: 692  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEG 746
             +V+ E  R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +  
Sbjct: 784  TNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAE 842

Query: 747  FIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKA 805
               G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   
Sbjct: 843  MTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLL 902

Query: 806  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 865
            +  V +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL
Sbjct: 903  KLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASL 944

Query: 866  PEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 924
             E  H   ++  S  N T +F  ++   GQ V  T+       T   L +   A   T  
Sbjct: 945  VETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMR 1004

Query: 925  SSSKRAK-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 967
             + K ++                 KK +  +G +V   +  IKP  + +    G  G IH
Sbjct: 1005 PTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIH 1064

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELS 1014
             + + DD         +  K+G+TVTAR+I      DM K+F +             ELS
Sbjct: 1065 ASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELS 1119

Query: 1015 IKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLF 1067
            ++PS L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ 
Sbjct: 1120 VRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIP 1179

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISND 1126
            +L ++     L+   ++F +G+A+   V+  +  K LL L L  P +             
Sbjct: 1180 LLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHK------------- 1226

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                 + EG++  GR+ K+    G         L     F ++  + +      Y E   
Sbjct: 1227 -----LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE--- 1269

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
             PL  +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   + 
Sbjct: 1270 TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EIN 1316

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPI 1300
             I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+       P 
Sbjct: 1317 SIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPE 1373

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
            GKL+  RVL +      VE++    D+      + + LS    G +   + ++ E+    
Sbjct: 1374 GKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEERD 1428

Query: 1361 ITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRIS 1410
               E  N       ++  ++ V+            +   R G + +    +   E+ R+S
Sbjct: 1429 QKGEKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVS 1484

Query: 1411 LGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLV 1470
               K +    + D+L      E  E  EE     +    E  +   +   ++   G +  
Sbjct: 1485 KKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWN 1540

Query: 1471 LAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE 1530
            +       ++PPL  + D E+ +  +  +Q             K ++  ++ EK++ E+E
Sbjct: 1541 VGLDSLTPALPPLAESSDSEEDEKPHQATQI------------KKSKKERELEKQKAEKE 1588

Query: 1531 IRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            +   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+
Sbjct: 1589 LSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALK 1648

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
            TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E
Sbjct: 1649 TISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSE 1706

Query: 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFIS 1708
            + + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I+
Sbjct: 1707 KFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIA 1766

Query: 1709 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1768
            + A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LS
Sbjct: 1767 KFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLS 1826

Query: 1769 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            L PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1827 LAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1865


>gi|255082708|ref|XP_002504340.1| predicted protein [Micromonas sp. RCC299]
 gi|226519608|gb|ACO65598.1| predicted protein [Micromonas sp. RCC299]
          Length = 2018

 Score =  630 bits (1625), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 469/1540 (30%), Positives = 774/1540 (50%), Gaps = 182/1540 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGL---ARAADALDPILDNEIEANEDNL--- 57
            +N+  GMK+ GVV EVN++ L + LP GL+G    A A+D L P      +  + +    
Sbjct: 79   KNLRVGMKVLGVVTEVNDRGLTVSLPNGLKGTVTRAEASDVLAPASKRGKKGPDGDDPSE 138

Query: 58   --------------------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLY 97
                                L ++F VGQ++ C V QL   K   G ++I LS RLS + 
Sbjct: 139  ASESESESEEEDEDEDERLDLTSMFQVGQILRCKVRQLGKGKS--GGKRIDLSTRLSQVC 196

Query: 98   KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGIDVKPGLLLQ 156
              +S  ++ +GM + A V S+EDHGY+L FG   S TGFLPR +  ++    +  G +L 
Sbjct: 197  SNISGHSLTDGMAVPACVNSVEDHGYVLSFGCSDSPTGFLPRKSCPQSLVDTLVRGSILD 256

Query: 157  GVV-----RSIDRTRK-----VVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 206
             V+     +   R R      V+  ++DP  V++ VT +  G ++  L+PGM+V+ RV++
Sbjct: 257  VVIAGDEGKDGKRARSKGPGGVMQCTADPKRVAQAVTHEGDGAAMSTLLPGMLVNARVKA 316

Query: 207  ILENGVMLSFLTYFTGTVDIFHLQNTF--PTTNWKNDYNQHKKVNARILFVDPTSRAVGL 264
            +L +G+ ++F+TYFT TVD FH+         +    +   ++V AR+L+VD  ++ VGL
Sbjct: 317  VLADGLQMNFMTYFTATVDAFHVGGGVHGAAPDPAAAHKTGERVRARVLYVDAAAKRVGL 376

Query: 265  TLNPYLLHNRA---PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS---TPAYVTIS 318
            TL P+L+   A     +  K G I++ + V RVD  +G+LL++ S   +   T  Y  IS
Sbjct: 377  TLRPHLVTLEASVRAGAMPKPGTIFETAVVRRVDTAIGVLLELKSENENVHPTFGYCHIS 436

Query: 319  DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 378
            D A+E + KLEK++K G  VR R++G R ++ +AT   K++  +    +  ++ PGM V+
Sbjct: 437  DAADEHLDKLEKRFKVGKKVRARVIGSRAMDSVATVSCKSTVLDQPFLSLEELVPGMQVR 496

Query: 379  GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRI 436
            G+V+AV+ +GA+V+   GVKALCP  H+S+        K K G    FRV+ V     R 
Sbjct: 497  GEVVAVEPYGAVVKLAPGVKALCPPNHISDIPGRVTNAKVKEGLSAKFRVVSVDRVKGRA 556

Query: 437  TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 496
             VTHKK L++S+L +++S  +AT    THG +T +E +G FV+ Y  ++G A   +LGL 
Sbjct: 557  VVTHKKQLIRSELPVVASLDDATPGTTTHGVVTGVEPYGVFVQLYGNLRGLAGLQDLGLA 616

Query: 497  PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL------------VKL 544
                P   + VGQVV+  ++ S    ++I LS        + +DL             + 
Sbjct: 617  ADQTPQEAFAVGQVVRATVIRSDRGEQKIKLSLAPGGAVANGNDLDGTPGEKGDVGAPEP 676

Query: 545  GSLVSGV----VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 600
            G++V       VD  T N   V V   G   G +    ++DH      +     PG E  
Sbjct: 677  GTVVESATVKRVDEATGN---VQVTLPGGVPGVVTAAQMSDHPLTGAGLSQAFAPGDEIG 733

Query: 601  QLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCN-IIETGCFVRFL 657
             L+ L+ +    +LS K SL+ +A+   LP D S +   ++  GYV +     G FVRFL
Sbjct: 734  PLVALEAKPRRSILSRKASLVEAARGGTLPEDISGVVVGAIYPGYVASATANAGVFVRFL 793

Query: 658  GRLTGFAPRSKAVDGQRA---DLSKTYYVGQSVRSNILDVNS--ETGRITLSL-----KQ 707
            GRLTG AP S+  D   A   D  + + +GQ+V + ++ V++  E  R++LSL       
Sbjct: 794  GRLTGLAPPSQLTDVPVAGGVDPEEMFALGQTVLARVVSVDATVEPPRLSLSLAPRGVAA 853

Query: 708  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI---------IGSVIEGKVH 758
            S   + +A  ++  F  +  +A   + +   S  +  EGF+         +G  I+G VH
Sbjct: 854  SSGVTAEAPLIRSIF-TDVDVADRLADERAASGGEAPEGFLTAAANEKLKVGEEIKGVVH 912

Query: 759  ESNDFGVVVSFEE-HSDVYGFITHHQLAGATVES--------GSVIQAAILDVAKAERLV 809
               ++GV+V   +   D  G +  HQL  A  ++        G  I   +LDV++ E +V
Sbjct: 913  AVREYGVLVDMPDVDPDAVGLVAFHQLPNANGDNEEPKHPAEGEKITGRVLDVSRREGVV 972

Query: 810  DLSLKTVFID-----RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 864
            D+  +          +  +A +  + +K+K  +  +  L +   V A VE+VK  Y VLS
Sbjct: 973  DIGARPSLTGAKVGKKGAKALTTAELKKRKAAQAGAHKLEIGSKVTAEVELVKPEYAVLS 1032

Query: 865  LPEYNHSIGYASVS----DYNTQKFPQKQFLNGQSVIATVMALPSSSTAG-RLLLLLKAI 919
            LP++  +I YASV+     +N  +   ++F  G+ V A V    +S + G RLLL + A 
Sbjct: 1033 LPDHGGAIAYASVNLLNRRFNEDEVETERFAVGRKVTAFVAGNAASGSPGDRLLLTVPAA 1092

Query: 920  SETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV 979
               + + S  A   S+   G  ++  + E++ ++  L    G  GR+H TE       + 
Sbjct: 1093 KSNKGAGSGEA---SAVGAGLAMEGVVKEVQSMQAILTLPNGRKGRLHATE-------LA 1142

Query: 980  ENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE------ 1033
            E  F   KI    T  ++  +  P   +  + EL+++ S+    EI              
Sbjct: 1143 EGAFPMKKIAVGATLNVV--TLGPAGDRGNMLELTVRRSVEESREIARAATDAGGGDGSG 1200

Query: 1034 ---------CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQR 1083
                       +S G  + G V  V  +   + ++  L A++  +++    + L++    
Sbjct: 1201 AGIAGTAALATLSEGDEIDGIVSAVSADTLAIAVAPGLTARVPKIETGDSIAALRKALTS 1260

Query: 1084 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1143
            RF +G+ V    L+ +  +K + + LR         + D  N      + EG  + G +S
Sbjct: 1261 RFTVGERVKMTALAADVARKKIIVTLR---------SADKRN------VVEGAKIAGIVS 1305

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
            KI  G GG+ VQ+    +GRVH T++ +    DP S       +P   +  G+ V+ +VL
Sbjct: 1306 KIAPGGGGVFVQLNSRQHGRVHVTDIAD----DPRS-------EPWKLHSVGEAVEVRVL 1354

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             +         V+LS++SS   + S  SS+           +  +  L+P   V G+VK 
Sbjct: 1355 GVGE----GGEVDLSMKSS--ALKSKGSSN----------GISSVSQLAPGAHVSGFVKQ 1398

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            V   GCF+ +SR +DA+V + NL+D +V  P +EFP GKLV G +LSV+  S R E+TL+
Sbjct: 1399 VNKGGCFVAISRSVDARVKMCNLADTFVSDPAQEFPKGKLVKGTILSVDESSGRAEMTLR 1458

Query: 1324 TSD-SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            +      A +S+I+N +++  G + +G ++RV++YG+F+T++ +   GLCH+S  ++  +
Sbjct: 1459 SDGMDAAAGRSQIDNNAHVEEGSVQMGTVRRVQTYGVFVTLDGSGRSGLCHISMFADARI 1518

Query: 1383 -DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
             D++E   RAGE+V+VK+L+VD+E  +ISLGMK S F +D
Sbjct: 1519 KDSLEQHVRAGERVRVKVLQVDEETGKISLGMKPSLFADD 1558


>gi|325180379|emb|CCA14782.1| rRNA biogenesis protein rrp5 putative [Albugo laibachii Nc14]
          Length = 1939

 Score =  600 bits (1548), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 555/1944 (28%), Positives = 926/1944 (47%), Gaps = 250/1944 (12%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL------------DNEIE 51
            ++I + M L G++ ++ E  L+I LP  L G     +  D               ++ I+
Sbjct: 106  KSIKSNMLLLGLIRDITETGLLISLPSKLNGFVPMEECSDEFYHHLHASSSSSGPNSTIK 165

Query: 52   ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 111
            A++   L  IF + Q V C+VL    D K  GK  + LS+RLSLL+   +   V++ M +
Sbjct: 166  ASKLAPLNAIFSINQYVPCMVLNKSKDDK--GKHLV-LSMRLSLLHAEYTPNCVKKSMTM 222

Query: 112  TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-----VVRSIDRTR 166
               ++S+ED G +++ G+     F P++ L      D +   +L G      V +++   
Sbjct: 223  YGTIQSMEDQGAVINLGIRGMHAFAPKSQLLAACPEDPECASMLMGRQFLFTVLNVNPHT 282

Query: 167  KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD- 225
              V LS   +   K VT+    +++  L+PG++++ RV+ ++ NG+ ++FLT+F GTVD 
Sbjct: 283  STVTLSPARNHTIKAVTRG-DHLTVKHLLPGLLLNVRVEQVVSNGLFVNFLTFFHGTVDY 341

Query: 226  ------IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP--P 277
                  IFH   T     W   + +  K  ARI+ VD   + + L++ P+++H   P   
Sbjct: 342  NHVSRLIFH-DETEDMKTWTLMFKKGIKSRARIIGVDRAEKKIMLSMAPHIVHLDHPFDA 400

Query: 278  SHVKVGDIYDQSKVVRVDRGLGLLLDIP---STPVST---PAYVTISDVAEEEVRK-LEK 330
              + VG   D + + R+D G+G+LL +P    TP      PAYV IS+V++  V K L+K
Sbjct: 401  HSMPVGSSIDSATIERIDPGIGMLLSLPLFEETPSKNSKLPAYVHISNVSDAHVDKHLDK 460

Query: 331  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 390
            KY  G  +R R++G    + + T   K S+    V  H D+ PG  V  K++ +  +G +
Sbjct: 461  KYTIGDKMRCRVIGSASFDNIVTVSCKESSLSQTVLRHCDLAPGQHVNAKILVMKEWGVL 520

Query: 391  VQFPGGVKALCPLPHMSEFEIVKPGK------KFKVGAELVFRVLGV--KSKRITVTHKK 442
            ++   GV+ L  + H+      K  K      KF+ G  +  +VL V   +K+  +T K+
Sbjct: 521  LEISEGVRGLVTMQHVPSIIASKLTKSKDAIGKFQQGRMVDAQVLHVDTAAKKTFLTMKR 580

Query: 443  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP- 501
             L++S+  IL+SY +A + L+T G+ITKI   G  V FY GV G  P S L    G E  
Sbjct: 581  ALMESQFPILASY-KAENGLVTMGYITKIAPFGVIVSFYGGVHGLVPASTLH-QAGIECF 638

Query: 502  SSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRV-SEDDLVKLGSLVSGVV--DVVT 556
               Y +GQVV+ RI       +R+ LS      PT V S+D L+  GS++  VV  D+  
Sbjct: 639  EDAYTLGQVVRARITYCDTEKQRLLLSLNTTSTPTEVDSKDSLI--GSILCDVVVTDIDM 696

Query: 557  PNAVVVYVIAKGYSKGTIPTEHLADHLEH--------ATVMKSVIKPGYEFDQLLVLDNE 608
               VV      G   G +   HL D   H        A++ K  I  G EF   LVL   
Sbjct: 697  EEHVVRVKTPLGLI-GNVSFVHLTDFPRHSFLIDLILASIRKDEIWAGQEF---LVLSQS 752

Query: 609  SSNLL-LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPR 666
            +  +L LS K  L     ++P     +   S + G+V  I  E G FV FL  LTGFA +
Sbjct: 753  TDRVLELSRKPMLTRHISKIPQSIDSVSEKSKLFGFVAAIEPEKGVFVEFLNHLTGFAHK 812

Query: 667  SKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLL 724
            S  VD +   +  S  + VG++V  ++L+   + G+ T+             F   HF L
Sbjct: 813  S-LVDEKFVQVISSDAFQVGETVVCSVLN-KLQGGKFTVD------------FRARHFTL 858

Query: 725  EEKIAML-QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 783
            E   +   + S+   +E    +GF +G  + G+      +G V S E+ SD    +    
Sbjct: 859  EHFPSYFAEWSRQVYTETNAYQGFPVGLAVNGEFVAKRSYGSVFSIED-SDFQASV---- 913

Query: 784  LAGATVESGSVIQAAILDVAKAERLVDLSL-KTVFIDRFREANSNRQAQKKKRKREASKD 842
            L    +E  S     ++       LVD  + K V+     E  + R    K+R R   + 
Sbjct: 914  LVRDGIEMDSTSSQKLV-------LVDFDVEKKVYFGILDEKLA-RSCTLKRRSR--WER 963

Query: 843  LGVHQTVNAIVEIVK--ENYLVLSLPEYNHS-IGYASVSDY--NTQKFPQKQFLNGQSVI 897
            L + Q ++A V  +   E Y V++L     S IG   +SD+     K  ++       V+
Sbjct: 964  LAIDQNLDARVLAIGTLEQYAVVALNVGKRSQIGVVQLSDFWRPLSKCIEEDTRIKCRVV 1023

Query: 898  ATVMALPSSS----TAGRLLLLLKAISETE------------TSSSKRAKKKSSYDVGSL 941
            AT +     S    T    L LL+   + E             S  +       + VG L
Sbjct: 1024 ATCLRDTRDSDVIPTPFEELPLLRVCDDHEHRQKPARLLRDAVSMPRYKHPAEEFQVGKL 1083

Query: 942  VQAEITEIKP--LELRLKFGIGFHGRI----HITEVNDDKSNVVENLFSNFKIGQTVTAR 995
            V   I  IK   +E++LK      G++     I +V+ D++    +    +     VT R
Sbjct: 1084 VTGRIATIKQDGMEIKLK-ATKQCGKVVAMVSIIDVDADENET--HPLDQYAPKMAVTGR 1140

Query: 996  II------AKSNKPDMKKS----FLWELSIKPSMLTVSEI------------GSKLLFEE 1033
            I+      A   KP  + +     + +LS++   ++  E+            GSKLL   
Sbjct: 1141 ILTIMQKGANQRKPVSESNPATFHILQLSLRQQDISSDEMEHLRADWGLENKGSKLL--- 1197

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLT-ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1092
               ++G  + G V +    W LL  +S  +   L  ++ + E S L+ F   + +GK V 
Sbjct: 1198 ---TVGNVLEGVVVE-QKAWGLLIRLSHRVVGFLHCMEISTELSVLERFHELYPVGKRVN 1253

Query: 1093 G-HVLSINKEKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
            G H++S++  ++ + L ++   ++GI++        N+Q       +V     K      
Sbjct: 1254 GCHIVSVDHAERRVDLSLIHESKEGITE--------NLQVGNKVIGVVLDSSKKAPFRPP 1305

Query: 1151 GLVVQIGPHLYGRVHFTELKNIC--VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1208
             L++Q+  + +GRV  TEL++     S  L    E QF P      G+F+   +L   + 
Sbjct: 1306 SLMLQLSAYTFGRVCVTELRSPTNWTSQMLQ---ESQFKP------GKFLVGTLLSAQKD 1356

Query: 1209 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1268
            V      E++LRS        +  D S      G             +V G + + +S G
Sbjct: 1357 VW-----EVTLRS--------DRQDESYSTYEIGN------------LVTGIIASTSSMG 1391

Query: 1269 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
            CF+ ++  L  +VLL +LSD ++  P  EFP+GK+VAGR+ + +     V  ++    S 
Sbjct: 1392 CFVRINHLLTIRVLLRDLSDNFINDPISEFPVGKVVAGRITAKQVTQDAVLYSMSLKPSI 1451

Query: 1329 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-IET 1387
             +       ++NL  G IV G++ +++SYG+F+ +  +NL GLCH+SE+ E+ +   +  
Sbjct: 1452 VSDGIASLTMTNLKEGMIVTGKVSKIQSYGVFVRLNQSNLSGLCHISEIGEERIQKPLTE 1511

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD--NLQMSSEEESDEAIEEV-GSYN 1444
            +++ G+ VK K+LKV  E  RISLG K +YF +D +  N++   ++ SD+ ++       
Sbjct: 1512 LFKEGDSVKAKVLKV--ENGRISLGFKLAYFDDDIESANIETIDQQRSDDEVQRPEADET 1569

Query: 1445 RSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGH 1504
              +  E+ S +V  ++ ++    S+     E    VP +    D+ +       S+ +  
Sbjct: 1570 SEAQSESESESVNAVEADNTQAVSME-VDTEEEEDVPAVGFQWDEFEA------SKEESP 1622

Query: 1505 TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1564
                K++  +N     +     RE+E+  +E+       P+   +FERL+   P  +++W
Sbjct: 1623 KAVVKSVCGRNPLWMDEGSVAIREKELALSEQE------PQCAQDFERLLTIHPQDAYLW 1676

Query: 1565 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1624
            I+YMAF +S+ +V+ AR +A RA + I  R+E EKLN+W+AY NLE+++G+   E+  +V
Sbjct: 1677 IRYMAFHISLQEVQLARDVAMRATRMIAFRDEKEKLNVWIAYLNLEHDFGDA--ESFQRV 1734

Query: 1625 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ 1684
               A+Q   PK ++L L+ LY R+ Q+    E+L  M KKFK S  VW+R ++  + +  
Sbjct: 1735 LHSAIQVNPPKSIYLHLVDLYVRSNQHANVLEVLSTMQKKFKTSRAVWIRALRYFVLENS 1794

Query: 1685 EGVQA--VVQRALLSLPRHKHIKFISQTAILEF---------KNGVADRGRSMFEGILSE 1733
            + V+A  V+  AL  LP  KH+  + +  +  +         +N + ++ R++ EG+L+ 
Sbjct: 1795 DHVKAAHVISSALKYLPGVKHVDILVKYGLFLYDPRAGKDKSRNAI-EKARTVLEGVLAT 1853

Query: 1734 YPKRTDLWSIYLDQEIRLG--------DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1785
            YPKR DLW++Y D+EIRL         D D IR LFER +++    KKMKF FKKY+ +E
Sbjct: 1854 YPKRMDLWNVYADKEIRLCKDTNCTDEDRDRIRQLFERLLAMKFSTKKMKFWFKKYISFE 1913

Query: 1786 KSVGEEERIEYVKQKAMEYVESTL 1809
            ++ G++  +E+VKQ A  YVE  +
Sbjct: 1914 QTFGDQAHVEHVKQLAKSYVEHAM 1937


>gi|326527133|dbj|BAK04508.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 450

 Score =  555 bits (1429), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/471 (59%), Positives = 355/471 (75%), Gaps = 31/471 (6%)

Query: 1349 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1408
            GQ+KRVESYGLF+TI+++ LVGLCH+SELS++ V +I   YRAG+ VK KILK+D+++ R
Sbjct: 2    GQVKRVESYGLFVTIKSSELVGLCHISELSDEPVLDINACYRAGDMVKAKILKIDQDRHR 61

Query: 1409 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEV-------GSYNRSSLLENSSVAVQDMDM 1461
            +SLG+K SYF +D  + +  +E + +    ++       G +N +S L            
Sbjct: 62   VSLGLKESYFDSDMTDDENDNENDGERVPMDISRAPQISGGFNSTSFLPGP--------- 112

Query: 1462 ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKK 1521
                         E RAS+P L+V LD+ +     G  +     + +++  +K++R  K+
Sbjct: 113  -------------EPRASIPALQVTLDEYEGSDQEGDQKGHEIANGSESNVKKSDRRLKE 159

Query: 1522 KEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1581
            K +++RE EI A EER L+KD P+TPDEFE+LVRSSPNSSFVWIKYMAF+L +ADVEKAR
Sbjct: 160  KARKQREIEISALEERALQKDTPQTPDEFEKLVRSSPNSSFVWIKYMAFLLDLADVEKAR 219

Query: 1582 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1641
            S+AERAL+TINIREE EKLN+WVAYFNLENEYG+P E+AV K+FQRALQYCDPKKVHLAL
Sbjct: 220  SVAERALRTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLAL 279

Query: 1642 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLP 1699
            LG+YERT+QN+LADEL  +M K+FK SCKVWLRR+Q  L Q +  E +++VV RALLSLP
Sbjct: 280  LGMYERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLP 339

Query: 1700 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1759
            + K IKF++QTAILEFK GVA+ GRS FE IL EYPKRTD+WS+YLDQEIRLGD ++IR 
Sbjct: 340  QSKRIKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRA 399

Query: 1760 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            LF+R   LSLPPKKMKFLFKKYL YEK+ G+EERIE+VKQKAMEYVE + A
Sbjct: 400  LFDRVTCLSLPPKKMKFLFKKYLRYEKAQGDEERIEHVKQKAMEYVEISRA 450


>gi|397510731|ref|XP_003825744.1| PREDICTED: protein RRP5 homolog [Pan paniscus]
          Length = 1803

 Score =  543 bits (1400), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 444/1554 (28%), Positives = 754/1554 (48%), Gaps = 177/1554 (11%)

Query: 332  YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 391
            +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G +V
Sbjct: 342  FKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLV 401

Query: 392  QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 449
            +    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL
Sbjct: 402  KVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKL 461

Query: 450  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
             +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQ
Sbjct: 462  PVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQ 521

Query: 510  VVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNA 559
            VVK  +++  P+  R+ LSF +        +P   S+     +  G LV   V   T + 
Sbjct: 522  VVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINTGQLVDVKVLEKTKDG 581

Query: 560  VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 619
            + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  K +
Sbjct: 582  LEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPA 640

Query: 620  LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
            L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D      
Sbjct: 641  LVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTST 700

Query: 678  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS---- 733
            S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ     
Sbjct: 701  SDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSL 759

Query: 734  -SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVES 791
             S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  VES
Sbjct: 760  MSNRDSVLIQTLAEMTPGMFLDLVVREVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVES 819

Query: 792  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 851
            G   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ   A
Sbjct: 820  GQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ---A 861

Query: 852  IVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAG 910
            +V+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T  
Sbjct: 862  VVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG- 920

Query: 911  RLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEIKP 951
             LLL ++  +   T    R                     KK +  +G +V   +  IKP
Sbjct: 921  -LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKP 979

Query: 952  LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1011
              + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F +
Sbjct: 980  THVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKY 1034

Query: 1012 -------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDN 1051
                         ELS++PS L    T     S    E+      GQ VT ++  Y V  
Sbjct: 1035 LPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVK 1094

Query: 1052 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1111
            +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L  
Sbjct: 1095 KWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTG 1154

Query: 1112 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1171
                                + EG++  GR+ K+     GL V           F ++  
Sbjct: 1155 THK-----------------LEEGEVAMGRVVKVTPN-EGLTVSFP--------FGKIGT 1188

Query: 1172 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1231
            + +      Y E    PL  +   + V+C +L  +  V     + LSLR      SS  +
Sbjct: 1189 VSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTN 1234

Query: 1232 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1291
             +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S    
Sbjct: 1235 PETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQ 1289

Query: 1292 ESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1345
             SP K+       P GKL+  RVL +      VE++    D+      + + LS    G 
Sbjct: 1290 HSPSKKTLYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQ 1344

Query: 1346 IVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKV 1395
            +   + ++ E+       E  N       ++  ++ V+            +   R G++ 
Sbjct: 1345 LTKQEERKTEAEERDQKGEKKNQKRNEKKNQKGQEEVEMPSKEEQQPQKPQAQKRGGQEC 1404

Query: 1396 KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA 1455
            +    +   E+ R+S   K +    + D+L      E  E  EE     +    E  +  
Sbjct: 1405 R----ESGSEQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKP 1456

Query: 1456 VQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKN 1515
             +   ++   G +  +       ++PPL  + D E+ +  +  +Q             K 
Sbjct: 1457 AEAPRLQLSSGFAWNVGLDSLTPALPPLAESSDSEEDEKPHQATQI------------KK 1504

Query: 1516 NRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1574
            ++  ++ EK++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L  
Sbjct: 1505 SKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQA 1564

Query: 1575 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634
             ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P
Sbjct: 1565 TEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEP 1622

Query: 1635 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQR 1693
             KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QR
Sbjct: 1623 LKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQR 1682

Query: 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1753
            AL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G 
Sbjct: 1683 ALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGS 1742

Query: 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
               +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1743 QKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1796



 Score =  153 bits (386), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 132/458 (28%), Positives = 201/458 (43%), Gaps = 55/458 (12%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
           +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78  ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58  -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
            LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138 HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
           S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196 SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
           S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256 SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232 TFPTTNWKNDY-------------------NQHKKVNARILFVDPTSRAVGLTLNP---- 268
               T + N                     N HK    RI+          L+L      
Sbjct: 316 KKAGTYFSNQALSHLSDSKNVFNPEAFKPGNTHK---CRIIDYSQMDELALLSLRTSIIE 372

Query: 269 --YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 326
             YL ++   P  V  G        V   +  G+L+ +          + ++D+    ++
Sbjct: 373 AQYLRYHDIEPGAVVKG-------TVLTIKSYGMLVKVGEQMRGLVPPMHLADIL---MK 422

Query: 327 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIA 383
             EKKY  G  V+ R+L            LK +  E    ++  ++D KPG+   G +I 
Sbjct: 423 NPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIR 482

Query: 384 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 421
           V  +G IV+F   V+ L P   +S   I  P + F  G
Sbjct: 483 VKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTG 520



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 125/309 (40%), Gaps = 47/309 (15%)

Query: 254 FVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 313
             D   ++V L+LNP  ++       +K G +   +     D G   L+DI      T A
Sbjct: 158 ITDRGKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHGY--LVDIGVD--GTRA 213

Query: 314 YVTISDVAEEEVRKLEK--KYKEG---SCVRVRILGFRHLEGLATG---ILKASAFEGLV 365
           ++ +   A+E +R+  K  K K G   +C+  ++ G   +  L+ G   +  A A E   
Sbjct: 214 FLPLLK-AQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQS 272

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQF-----------------PGGVKALCPLPHMSE 408
           +  +++ PG+VVK +V  V  FG  + F                  G   +   L H+S+
Sbjct: 273 WNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTYFSNQALSHLSD 332

Query: 409 FEIVKPGKKFKVGAELVFRV--------LGVKSKRITVTHKKTLVKSKLAILSSYAEATD 460
            + V   + FK G     R+        L + S R ++   + L          Y +   
Sbjct: 333 SKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYL---------RYHDIEP 383

Query: 461 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 520
             +  G +  I+ +G  V+    ++G  P   L       P   YH+G  VKCR++   P
Sbjct: 384 GAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDP 443

Query: 521 ASRRINLSF 529
            ++++ ++ 
Sbjct: 444 EAKKLMMTL 452


>gi|302845196|ref|XP_002954137.1| rRNA processing protein Rrp5/programmed cell death protein 11 [Volvox
            carteri f. nagariensis]
 gi|300260636|gb|EFJ44854.1| rRNA processing protein Rrp5/programmed cell death protein 11 [Volvox
            carteri f. nagariensis]
          Length = 2192

 Score =  531 bits (1369), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 447/1581 (28%), Positives = 757/1581 (47%), Gaps = 229/1581 (14%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA---RAADALDPILDNE----------- 49
            +++ AG ++WG+V EV  + LV+ L  GLRG     +A+D L  +L  +           
Sbjct: 121  KDLHAGTRVWGMVLEVTPRGLVVSLAHGLRGYVAPNQASDVLALMLKAQKTAAAAAAGDR 180

Query: 50   -----------IEANEDNLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRK---IWLSLRL 93
                       +EA    + P   +F VGQ V  +V++    +   G R    + LSL L
Sbjct: 181  GDVARKKGAALLEAAGGVVPPLTDLFVVGQFVRGVVMEAPTGEDTGGGRSAKHVALSLLL 240

Query: 94   SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE--NSGIDVKP 151
              +  GL  E V EG+ L A V+S+EDHGY L FG+   +GFL + +       G+ ++ 
Sbjct: 241  RDVQGGLGSEAVAEGLALGAVVRSVEDHGYTLSFGIKGTSGFLRKKDHEAQFGEGVALQV 300

Query: 152  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILEN 210
            G L+  VVR+    R V+ +S  P  V+  VT++ +G+S +  ++PG +++ +V+ +L N
Sbjct: 301  GGLIDVVVRNAADKRNVL-VSCAPGDVAAAVTREAEGMSGLGAVLPGALLNVKVRKVLSN 359

Query: 211  GVMLSFLTYFTGTVDIFHLQNTFPTT------------NWKNDYNQHKKVNARILFVDPT 258
            G+++SFLT+F GTVD++HL                   +W+  Y +  K+ AR+L+ D  
Sbjct: 360  GLLVSFLTFFHGTVDLYHLPAASAAAAAAATGGAAGSKDWRKLYPEGTKLRARLLYADLV 419

Query: 259  SRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDR--GLGLLL---DIPSTPVSTPA 313
             +  GL+L P+L     P     +G ++ +++VVR+D   G GLLL    +P  PV+   
Sbjct: 420  RKRAGLSLLPHLAAQTLPSPVPVLGSVFPEAEVVRLDAAGGPGLLLRMEGLPEGPVA--G 477

Query: 314  YVTISD------VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 367
            Y  +S+      VA+E V  + +KYK G+ +  R++G+R L+G+A+  ++ S     V +
Sbjct: 478  YCHVSNALEEKKVAKEAVAAMAEKYKVGTKLPARVIGYRLLDGMASVTVRPSQVNAAVLS 537

Query: 368  HSDVKPGMVVKGKVIAV---DSFGA-IVQFPGGVKALCPLPHMSEF---EIVKPGK---- 416
             +D+ PGM+V G VI+V   D  G  +VQ   GVK L P  H SE         GK    
Sbjct: 538  FTDLTPGMLVAGTVISVPDRDGDGPLLVQIAEGVKGLVPPLHASELTGAAAAAAGKTSGG 597

Query: 417  ----KFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 470
                K KVG  +  RVL +   ++++T+T +K  + +K A L S A+A      HG +T 
Sbjct: 598  KRRIKVKVGDRVEARVLDLDLGARKVTLTLRKAFLATKAAPLVSAAQAVPGSRFHGMVTG 657

Query: 471  I-EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI---- 525
            + ++ G FV F++G+ G A   +LGL+PG +    + +GQVV+  I+S+  A  RI    
Sbjct: 658  LHDRLGVFVSFFSGLSGLASHDDLGLEPGQDVKEAFGIGQVVRATILST--AGGRIKLSL 715

Query: 526  ---------------------NLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVV 562
                                 +L   ++P  ++E  ++K+  G          TP     
Sbjct: 716  ASKSAAAEAAAAAASNGISTPDLLGGLQPGDIAEAVVLKVHNGGEGGDAASSATPFYTCR 775

Query: 563  YVIAKGYSKGTIP--------TEHLADHLEHATVMKSVIKPGYEFDQLLVLDN-ESSNLL 613
                     G++P          HL+DH       ++V++PG +  +++VL+  E++  +
Sbjct: 776  LERPGVSGGGSVPLGVRARLEVPHLSDHPAALEAFRAVVRPGTKLGRVVVLERLEAARCV 835

Query: 614  -LSAKYSLI--NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 670
             +S K SL+   +A +LP     +   +V+ GYV ++     +VRFLG LTG A   +  
Sbjct: 836  RVSRKPSLLAAGAAGRLPRRFEEVVEGAVLPGYVASVTPDAVYVRFLGGLTGRAGLPQLS 895

Query: 671  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 730
            D   ++    +  GQSVR+ +   ++   R TL L+ S  +STD +F+ ++F   +++  
Sbjct: 896  DVFVSEPRLLFAEGQSVRAQVAVCDAARQRFTLMLRPSVTASTDGAFLLDYFKEMQQLQA 955

Query: 731  LQSSKHNG-------------------------SELKWVEGFIIGSVIEGKVHESNDFGV 765
            L++                              ++L     F +G +   +VHE  ++G+
Sbjct: 956  LRAEAEAEPGGGGGGGDGAAGNGAANGGSAAPPADLDPARVFPLGGLAAARVHEVKEYGI 1015

Query: 766  VVSFEEHSDVYGFI--THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
            V   +EH DV G +  +H    G +   G+ ++  +LDV   + LV+LSLK   +    +
Sbjct: 1016 VCDMDEHPDVVGLVPSSHAGALGPSPAVGTRVRGRVLDVVGHQGLVELSLKPGMVAAAED 1075

Query: 824  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN-YLVLSLPEYNHSIGYASVSDYNT 882
              + R A ++ +        GV   V A+VE ++   YL+LSLP+++ ++ YA+V+DYNT
Sbjct: 1076 GAAGRAAARQLKP-------GV--AVEAVVEGIRPGEYLILSLPQHSAALAYAAVTDYNT 1126

Query: 883  QK--FPQKQFLNGQSVIATVMALPSSSTAGRLL----LLLKAISETETSSSKRAKKKSSY 936
             +     + F  GQ + ATV A P  +  GR++    L           ++    KK + 
Sbjct: 1127 PRPDLVPRTFTVGQRLTATVAATPPDAPLGRIVCHVPLTRIGGGAGGKGAAASGGKKVTL 1186

Query: 937  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 996
            D GS+V+A +T I+P +L +                            +   G+TV A +
Sbjct: 1187 DPGSVVEAVVTGIQPYQLDV----------------------------SVCGGKTVEAVV 1218

Query: 997  IAK-SNKPDMKKSFLWELSIKPSMLTVSEIGSKLL--FEECDVSIGQRVTGYVYKVDNEW 1053
            + +       +   +W+LS++PS L  ++ G   +       ++ GQ++  +V +V  + 
Sbjct: 1219 LGRLQTGEGHRPGSVWDLSLRPSRLAKAKKGEPPVPSVTLSSLAPGQQLPCFVLEVAEDA 1278

Query: 1054 ALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1113
              L     ++ ++  LD++ +P  L +    F  G  V   VL++++++  L L L    
Sbjct: 1279 LWLGAGPAVRGRVAALDASLDPDVLTDLSSTFPPGTVVLARVLAVSRKRNSLDLSLIDPC 1338

Query: 1114 DGISDKTVDISNDNMQT---FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1170
             G +  +V        T      EG +V GRI  + +  GG+ V IG    G V  T++ 
Sbjct: 1339 SGTTRGSVAGGGAAATTAAPLPPEGALVMGRI--LAANGGGVRVSIGHRRAGSVALTDI- 1395

Query: 1171 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1230
                      YDE   D  +G  EG +V+ +VL       G F V LSLR S  G  + +
Sbjct: 1396 ----------YDEWVPDARAGLREGAYVRVRVLGRD----GDFAV-LSLRPSRGGAVAGS 1440

Query: 1231 SSDLST------------DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
               ++                     L   + L     V GYVK   +KG F+ L R  D
Sbjct: 1441 KPSVTAAGSKKQGGSSSSATAAAAPELISADSLKVGATVTGYVKRCDAKGLFLALDRFRD 1500

Query: 1279 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS--EIN 1336
              + L NLSDG++E P   FP G  +  RVL V     R+E+TL+++  +T+  +   + 
Sbjct: 1501 GHIKLVNLSDGFIEDPAAAFPAGMQLEARVLRVGE-GGRIELTLRSATRQTSGSAAPAVQ 1559

Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
            +LS L  G +V G+++RVE +G+F+ +  N  LVGL H+SEL++  V +I +++++ + V
Sbjct: 1560 SLSELRPGQLVSGRVRRVERFGVFVEVGGNPGLVGLAHISELADGPVKDINSVFKSKQLV 1619

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
            +  + KVD E  R+SL MK S
Sbjct: 1620 RAVVTKVDVEASRLSLSMKPS 1640



 Score =  325 bits (832), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/327 (49%), Positives = 221/327 (67%), Gaps = 30/327 (9%)

Query: 1513 EKNNRHAKKKEKEEREQEIRAAE-ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM 1571
            +K ++  KK+ KE+RE EIRAAE  RL    A   P +FERLV SSPNSSFVWIKYMA  
Sbjct: 1864 KKLSKGQKKRLKEQRELEIRAAELARLSGSAAATGPADFERLVLSSPNSSFVWIKYMALH 1923

Query: 1572 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN--PPEEAVVKVFQRAL 1629
            L   DV+ AR +A+RAL TIN REE EK N+WVA+ NLEN YG+   PEEAV+++ +RAL
Sbjct: 1924 LGKGDVDAARKVAQRALDTINYREEGEKFNVWVAWLNLENAYGSSPSPEEAVMELLKRAL 1983

Query: 1630 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ----- 1684
            QY D KK++LA LG++ER+ ++ LA++++  + KKF  S KVW R ++R L++       
Sbjct: 1984 QYTDQKKMYLAALGIFERSGRDDLAEQVVRTLTKKFGGSAKVWARALERSLQKGDGETPI 2043

Query: 1685 ----------------------EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
                                  +  + +++RAL SLP  KHIK + + A+ EF+ G A+R
Sbjct: 2044 FISYVPPSPVPYANFLRALRVAQSARQLLERALQSLPPRKHIKALVRAALAEFRLGSAER 2103

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
            GR + EG+L  YPKR DLW++Y+DQE++ G+   IR LFERA  L LPPKKMKFLF++YL
Sbjct: 2104 GRGILEGVLRNYPKRLDLWNVYIDQELKTGEQQRIRALFERATHLPLPPKKMKFLFRRYL 2163

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVESTL 1809
            EYEK  G+   +E+VK++AME+VES+L
Sbjct: 2164 EYEKEEGDTAAVEHVKRRAMEFVESSL 2190



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 10/182 (5%)

Query: 533  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 592
            P  +S D L K+G+ V+G V     +A  +++    +  G I   +L+D         + 
Sbjct: 1465 PELISADSL-KVGATVTGYVKRC--DAKGLFLALDRFRDGHIKLVNLSDGFIEDPA--AA 1519

Query: 593  IKPGYEFDQLLVLDNESSNL---LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 649
               G + +  ++   E   +   L SA      SA       S + P  +V G V  +  
Sbjct: 1520 FPAGMQLEARVLRVGEGGRIELTLRSATRQTSGSAAPAVQSLSELRPGQLVSGRVRRVER 1579

Query: 650  TGCFVRFLGR--LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
             G FV   G   L G A  S+  DG   D++  +   Q VR+ +  V+ E  R++LS+K 
Sbjct: 1580 FGVFVEVGGNPGLVGLAHISELADGPVKDINSVFKSKQLVRAVVTKVDVEASRLSLSMKP 1639

Query: 708  SC 709
            S 
Sbjct: 1640 ST 1641


>gi|428178388|gb|EKX47263.1| hypothetical protein GUITHDRAFT_137461 [Guillardia theta CCMP2712]
          Length = 1592

 Score =  525 bits (1351), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 430/1473 (29%), Positives = 729/1473 (49%), Gaps = 120/1473 (8%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNLLP- 59
            + ++ GM L G V EV + D  I LP  L G   +   +D L  +L+  +E  E +  P 
Sbjct: 129  KKLNTGMLLCGFVKEVRQADATISLPNNLTGWVEIDEISDELSAVLEQVLEDEEADAPPL 188

Query: 60   -TIFHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 115
                 +G  V C++L    L    K+  K  I +SL+ S +   L+L+T+ +G+ L   V
Sbjct: 189  EDYIWIGMPVRCVILSTAVLSTAGKQQHK-NISVSLKPSRVNSALALDTLHKGLSLYGAV 247

Query: 116  KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 175
             S ++ GY +  G    T FLP     E S  ++K G LL+  V+ + +  K+  +S+  
Sbjct: 248  SSKQEKGYTISLGTSEATAFLP---FQEVSRGELKVGQLLETYVKKVKKEHKLAIVSTQR 304

Query: 176  DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
            +++   +TK+++ +++D L+PGM+   +V  + E+G+++ FL +F GT+D+FHL     +
Sbjct: 305  ESLEDSLTKEIESLTLDNLLPGMIFKCKVAKVHESGLVVRFLNFFFGTIDLFHLP-LVGS 363

Query: 236  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---SHVKVGDIYDQSKVV 292
                  +++ + V ARI+ +D  +  +GL+L  ++L +  PP   + VK+G  +D + V 
Sbjct: 364  GKGVEQFSEKQVVTARIISLDVGANRIGLSLRRHVLDSLPPPYVQADVKMGQRFDGAIVR 423

Query: 293  RVDRGLGLLLDIP---STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 349
            RVD  +G+LL++        S   YV IS+V++E V K+EK+   G  V  R++GF   +
Sbjct: 424  RVDPEVGVLLEVQLGGEGSESLEGYVHISNVSDERVEKVEKEVAVGKEVSCRVIGFSWAD 483

Query: 350  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
            GL    +K S     V  + D+ PG +VK KV  +   G +V     V+   P  H ++ 
Sbjct: 484  GLINMSMKPSVLAAEVLLYDDLTPGDLVKVKVERLSEEGCLVSISDNVRGYIPSSHFADV 543

Query: 410  EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 467
             +V P ++   G  +  RVL V  +++++ +T KKTLV S L +++   +A   +++HG 
Sbjct: 544  ALVNPERRLLPGKMIKARVLRVNPQTRQLLLTLKKTLVSSSLPLIARVEDAKVGMLSHGV 603

Query: 468  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQVVKCRIMSSIPASRRIN 526
            + K+++ G  V F+   +GF PRSELG++   E     +   QV+K R++S     +RI 
Sbjct: 604  VYKVQESGVLVSFFGTAKGFLPRSELGIEQEAERVEDCFKPDQVLKVRVLSVEVDRKRIV 663

Query: 527  LSFMMKPTR---VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 583
            LS          ++    + +G LV   ++VV      + V A   + G +P  HLADH 
Sbjct: 664  LSLKAAKENSQIIATSARLTVGELVE--MEVVEKQEEALLVRAANGAVGFLPRPHLADHS 721

Query: 584  EHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSV 639
              A +    ++P       LVLD     S  L++ K SL+++ ++   PS  + +HP   
Sbjct: 722  NLAALAFQQLQPEARL-TCLVLDLLANKSRYLVTVKPSLLSAVREENFPSSLAQLHPQQF 780

Query: 640  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
            + GYV ++   G FVRFLGRLT  AP S    G   D    +  GQSVR  ++       
Sbjct: 781  LQGYVFSVKSCGVFVRFLGRLTALAPSSSLAAGHVDDPQSLFEEGQSVRCCVV------- 833

Query: 700  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 759
                +LK S C STD+SF++    +E    ++  ++  G E K       G V+E +V E
Sbjct: 834  ----TLKPSICLSTDSSFLKS---MEATEQLVLEAQMKGGESKRA-----GQVVEEQVVE 881

Query: 760  SNDFGVV---VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 816
            +   GV    + FE    + G    H    A V +G   +  +L       L+D   + V
Sbjct: 882  ALCVGVKGKELHFELPGSLVGVCPPHLHGRAKVTTGKRYKVCVL-------LIDKLRERV 934

Query: 817  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 876
            ++    E  ++ QA KK + +E  ++L    +V  IV++V E  +VLSLP+ +  +  AS
Sbjct: 935  YVGMEDELVASLQASKKGKGKEKEQELMPADSVRGIVQLVGEERVVLSLPQ-SRKLAVAS 993

Query: 877  VSDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 935
            + D+N + +  +KQF+ GQS+   V+        G  +L+++A S +  +  +  +K   
Sbjct: 994  IEDFNVRGERARKQFVPGQSMDVLVL-----EATGAPVLVMRADSGSGKTQRREGQKVDD 1048

Query: 936  YDV--------------------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND-- 973
             ++                    G LV+  +  +K     ++ G G  G I + +  D  
Sbjct: 1049 EELMRNGENCKGARLTSMEEAERGKLVKGIVHSVKATHANVRLGGGLRGVIDLLDAMDPE 1108

Query: 974  DKSNVVENLFSNFKIGQTVTARIIAK-SNKPDMKKSFLWELSIKPSMLTVSE---IGSKL 1029
            +     EN  S  + GQ + AR++   S     + + L  LSI+PS L   E   +  + 
Sbjct: 1109 EMREGKENRLSMLQQGQAIDARVLGVFSPARAGRDTRLVALSIRPSELAQPEETPLTKRP 1168

Query: 1030 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1089
              +E              + D  W  L  S  LK ++  LD++ E + L+  ++ F +G+
Sbjct: 1169 SLDELKEGEEVEGMVEKVEGDCLWVHLGSS--LKGRVEQLDASRELTVLENLKKNFKVGQ 1226

Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1149
             V   V++++  K  + L L    +   +K         +  I  G++V  +I K   G 
Sbjct: 1227 GVRASVIAVDVGKSRVDLRLLEEGEKGKEKGSGRKRKKGEEAIQVGEVVPAKIVKARPGF 1286

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
            G  V+++G H +GRVH  ++ +  V  PLS +  GQ            V+C VLE     
Sbjct: 1287 G-FVLKLGLHSFGRVHICDIADAAVDAPLSLFKVGQL-----------VRCCVLEAEED- 1333

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE--KIEDLSPNMIVQGYVKNVTSK 1267
                   LSLR S   +S     +    V   G   E   +++L+   ++ GYVK+ +S 
Sbjct: 1334 ----GFALSLRPSR--VSGKRRGEEEEAVREHGAFPEVSSVKELAVGQLLSGYVKSASSA 1387

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ L R++ A+V +S LSDGYV+  +  FP G+ V+GRV+SVE   ++V+++LK S  
Sbjct: 1388 GVFVQLGRQVTARVKISELSDGYVKDVKANFPPGRRVSGRVISVEVKKEQVDLSLKRS-- 1445

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                       S+L VG +V G +K V+S+G+F+ I  + L GLCH+SE+ E+ V ++  
Sbjct: 1446 -VVLGKRRVGWSDLQVGQVVAGAVKSVQSFGVFVRIRGSELDGLCHISEVGEEFVRDLSK 1504

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1420
             ++ G+KVK KIL++D +++ ISLGMK  Y ++
Sbjct: 1505 QFKQGDKVKAKILRMDPQRKTISLGMKPEYLQD 1537


>gi|395742011|ref|XP_002821182.2| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Pongo abelii]
          Length = 1839

 Score =  488 bits (1256), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 422/1497 (28%), Positives = 719/1497 (48%), Gaps = 174/1497 (11%)

Query: 388  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV----KSKRITVTHKKT 443
            GA  +   GV A   L H+S+ + V   + FK G     R++      ++ ++ +T KKT
Sbjct: 433  GATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDXLCDPEAXKLMMTLKKT 492

Query: 444  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 503
            L++SKL +++ YA+A   L  HG+I +++ +GC V+FYN VQG  P+ EL  +   +P  
Sbjct: 493  LIESKLPVITCYADAKPGLQIHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPER 552

Query: 504  MYHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVD 553
            +++ GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V 
Sbjct: 553  VFYTGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINVGQLVDVKVL 612

Query: 554  VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 613
              T + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++L
Sbjct: 613  EKTKDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVL 671

Query: 614  LSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
            L  K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D
Sbjct: 672  LCRKPALVSTVEGGQDPKNFSEIHPGMLLTGFVKSIKDYGVFIQFPSGLSGLAPKAIMSD 731

Query: 672  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIA 729
                  S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +      L +  E++ 
Sbjct: 732  KFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQ 791

Query: 730  MLQS--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAG 786
             ++S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG
Sbjct: 792  GVRSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAG 851

Query: 787  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 846
              VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       H
Sbjct: 852  QEVESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------H 896

Query: 847  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 905
            Q   AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+     
Sbjct: 897  Q---AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEP 953

Query: 906  SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 946
              T   LLL ++  +   T    R                     KK +  +G +V   +
Sbjct: 954  GVTG--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTV 1011

Query: 947  TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1006
              IKP  + +    G  G IH + + DD         +  K+G+ VTAR+I      DM 
Sbjct: 1012 KSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKMVTARVIGGR---DM- 1066

Query: 1007 KSFLW-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV-- 1046
            K+F +             ELS++PS L    T     S    E+      GQ VT ++  
Sbjct: 1067 KTFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKK 1126

Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
            Y V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L 
Sbjct: 1127 YNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLC 1186

Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1166
            L L             I    ++    EG++  GR+ K+     GL V           F
Sbjct: 1187 LSL-------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFP--------F 1220

Query: 1167 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1226
             ++  + +      Y E    PL  +   + V+C +L  +  V     + LSLR      
Sbjct: 1221 GKIGTVSIFHMSDSYSEM---PLEDFVPQKVVRCYILSTADNV-----LTLSLR------ 1266

Query: 1227 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1286
            SS  + +  + V+ P   +  I+D+    +++GY+ ++   G F  L   +      S++
Sbjct: 1267 SSRTNPETKSKVEDP--EINSIQDIKEGQLLRGYIGSIQPHGVFFRLGPSVVGLARYSHV 1324

Query: 1287 SDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1343
            S   +       K  P GKL+  RVL +      VE++    D+      + + LS    
Sbjct: 1325 SQHSLSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLE 1379

Query: 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGE 1393
            G +   + ++ E+       E  N       ++  ++ VD            +   R G 
Sbjct: 1380 GPLPKQEERKTEAGERDQKAEKKNQKRNEKKNQKGQEEVDLPSKEKQQPQKPQAQKRGGR 1439

Query: 1394 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSS 1453
            + +    +   E+ R+S   K +    + D+L      E  E  EE     +    +   
Sbjct: 1440 ERR----ESGSEQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPKEK--QTKP 1493

Query: 1454 VAVQDMDMESEDGGSLVLAQIES-RASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID 1512
                 + + S   G    A+++S   ++PPL  + D E+ +  +  ++            
Sbjct: 1494 AEAPRLQLSS---GFAWNARLDSLTPALPPLAESSDSEEDEKPHQATK------------ 1538

Query: 1513 EKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFM 1571
             K ++  ++ EK++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF 
Sbjct: 1539 -KKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFH 1597

Query: 1572 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1631
            L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY
Sbjct: 1598 LQAMEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQY 1655

Query: 1632 CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAV 1690
             +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V
Sbjct: 1656 NEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRV 1715

Query: 1691 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1750
            +QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+
Sbjct: 1716 LQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIK 1775

Query: 1751 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1776 HGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1832



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 133/438 (30%), Positives = 209/438 (47%), Gaps = 30/438 (6%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
           +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 130 ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 189

Query: 58  -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
            LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  + 
Sbjct: 190 HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTIS 247

Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
           S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 248 SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 307

Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
           S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 308 SIGHSEVSTAIATEEQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 367

Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
               T + N     + V A IL V P +R V L+L P  L    P + +   K+G + D 
Sbjct: 368 KKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQKLGAVLDD 422

Query: 289 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG-FRH 347
             V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+     
Sbjct: 423 IPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDXLCD 479

Query: 348 LEGLATGI-LKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 403
            E     + LK +  E    ++  ++D KPG+ + G +I V  +G IV+F   V+ L P 
Sbjct: 480 PEAXKLMMTLKKTLIESKLPVITCYADAKPGLQIHGFIIRVKDYGCIVKFYNNVQGLVPK 539

Query: 404 PHMSEFEIVKPGKKFKVG 421
             +S   I  P + F  G
Sbjct: 540 HELSTEYIPDPERVFYTG 557



 Score = 47.4 bits (111), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 20/187 (10%)

Query: 1241 PGKHL-----EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESP 1294
            PG+ L     +K+  +  ++ VQG+ K     G    L   + A   LS+LSD   V +P
Sbjct: 404  PGRPLTRLSCQKLGAVLDDIPVQGFFKKA---GATFRLKDGVLAYARLSHLSDSKNVFNP 460

Query: 1295 EKEFPIGKLVAGRVLS--VEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIG 1349
            E  F  G     R++    +P + ++ +TLK    +T  +S+   I   ++   G  + G
Sbjct: 461  EA-FKPGNTHKCRIIDXLCDPEAXKLMMTLK----KTLIESKLPVITCYADAKPGLQIHG 515

Query: 1350 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
             I RV+ YG  +   N N+ GL    ELS +++ + E ++  G+ VKV +L  +  K R+
Sbjct: 516  FIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERM 574

Query: 1410 SLGMKSS 1416
             L  K S
Sbjct: 575  LLSFKLS 581



 Score = 42.0 bits (97), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S++ PGM++ G V ++  +G  +QFP G+  L P   MS+  +      F  G  +V +V
Sbjct: 692 SEIHPGMLLTGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKV 751

Query: 429 LGVKSKR 435
             V  ++
Sbjct: 752 TNVDEEK 758


>gi|224138158|ref|XP_002322744.1| predicted protein [Populus trichocarpa]
 gi|222867374|gb|EEF04505.1| predicted protein [Populus trichocarpa]
          Length = 280

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/279 (82%), Positives = 256/279 (91%)

Query: 1528 EQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1587
            EQEI AAEER LE+D PRT DEFE ++RSSPN+SF+WI YM FMLS+AD+EKARSIAERA
Sbjct: 2    EQEISAAEERRLEEDEPRTADEFEMVIRSSPNNSFLWIAYMRFMLSLADIEKARSIAERA 61

Query: 1588 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1647
            L TINIREE+EKLNIWVAYFNLENEYGNPPE+AV KVFQRALQYCDPKKVHLALL +Y++
Sbjct: 62   LNTINIREEDEKLNIWVAYFNLENEYGNPPEDAVKKVFQRALQYCDPKKVHLALLKMYKK 121

Query: 1648 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFI 1707
            T QNKLA+ELL KMIKKFKHSCK WL+RV+ LLKQ+Q+GVQ+VVQRALL LPRHKHIKFI
Sbjct: 122  TNQNKLAEELLDKMIKKFKHSCKFWLKRVKWLLKQKQDGVQSVVQRALLCLPRHKHIKFI 181

Query: 1708 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1767
            SQTAI EFK GVADRGR++FE IL EYPKRTDLWS+YLDQEI+LGD D+IR LFERAISL
Sbjct: 182  SQTAIREFKCGVADRGRTLFEEILREYPKRTDLWSVYLDQEIKLGDADVIRSLFERAISL 241

Query: 1768 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            SLPPKKMKFLFKKYLEYEKS G+E++IE VKQKAMEYV+
Sbjct: 242  SLPPKKMKFLFKKYLEYEKSYGDEKQIESVKQKAMEYVQ 280


>gi|326433657|gb|EGD79227.1| hypothetical protein PTSG_12966 [Salpingoeca sp. ATCC 50818]
          Length = 2005

 Score =  457 bits (1177), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 401/1452 (27%), Positives = 692/1452 (47%), Gaps = 149/1452 (10%)

Query: 61   IFHVGQLVSCIV--LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 118
            +F VGQ + C V   +L +++  I      L++  + + KGL    + +G V+ A VKSI
Sbjct: 182  LFSVGQQIVCRVKSTELKNNRPIIN-----LTVNPTAINKGLETAALVKGRVVAACVKSI 236

Query: 119  EDHGYILHFGLPSFTGFLPRNN---LAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSD 174
            E+HGY+L  G+   TGFL  NN   L E  G   + PG  L   + +  +  +   + + 
Sbjct: 237  EEHGYVLDLGVGHATGFLSTNNAKPLCEKLGTKSLVPGHPLLVALTTTVKGGRAAKVIAA 296

Query: 175  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 234
            P  V+     D + +++  L  G++V  +V++   +G++ S L  F   V  +HL +   
Sbjct: 297  PSEVAATKLTD-EEVTLKQLRAGLLVDAKVKAHTRSGLIASALG-FDANVHYYHLPHVSG 354

Query: 235  ---TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR--APPSHVKVGDIYDQS 289
                   K  Y +   V ARI+F +P + ++ L+L P  +  R  A  +   +G I + +
Sbjct: 355  GDVQKRLKTAYPEGSVVPARIIFSNPAASSLNLSLLPAHISMRGSAAGTGATLGAIVETA 414

Query: 290  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 349
             V+R D   G +LD+ +   +   +V  S V++++     KK K GS  R RI+    ++
Sbjct: 415  TVLRTDGRGGAVLDLGA---AGQGFVAPSRVSDKKSDASLKKLKPGSVHRARIISVHPMD 471

Query: 350  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
             +    L+ S  +   + + D+  G VV+  V +++ +GA+V+    ++ L P  H ++ 
Sbjct: 472  NIVAVSLQKSVLDLPYYRYEDIPAGAVVEATVESLEEYGALVRLSDTIRGLVPALHFADV 531

Query: 410  EIVKPGKKFKVGAELVFRVLG--VKSK---RITVTHKKTLVKSKLAILSSYAEATDRLIT 464
             + KP  KF  GA++  RVL   V SK   R+  T KKTLV+S L +++S A A   ++ 
Sbjct: 532  TLRKPAVKFHPGAKVKCRVLSNIVTSKGKRRLAFTCKKTLVESDLPVIASAASARRGMLA 591

Query: 465  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY-HVGQVVKCRIMSSIPASR 523
            HG+I  I   GC VRFYN V+G  P  EL      + +S Y   GQVVKCR++ +  A R
Sbjct: 592  HGFIDSIRPFGCIVRFYNNVKGLVPLKELSATEKIKDASAYFKEGQVVKCRVVQTDQAKR 651

Query: 524  RINLSFMMKPTRVSEDDLVKL---------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 574
            RI LSF+   T +SEDD+ K          GS+V+ V+D V  + + V++      + TI
Sbjct: 652  RIGLSFIH--TALSEDDINKQRDTVTALSPGSIVTAVIDSVQTSGLNVHLKENPLVRVTI 709

Query: 575  PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESS-------NLLLSAKYSLINSAQQL 627
             + HL DH   A  M S    G +   +++     +       +L++ AK +++ S  +L
Sbjct: 710  DSMHLTDHPSLAPQMASCFTEGQKITAVVIWKRNRNVSLSLKPSLMVQAKEAVVASKDEL 769

Query: 628  PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 687
                 H        GY+ +   T  FV  +G ++G  P  +A  G    +   +   Q+V
Sbjct: 770  KEGEQHF-------GYISSSTRTMSFVNLIGSVSGMCPIREASSGYVRSMESYFSPNQTV 822

Query: 688  RSNILDVNSETGRITLSLKQSCCS-STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 746
             + +  +  + G++  S K +  S   +ASF+Q +F   E+IA+   S      LK+  G
Sbjct: 823  CARVHAI--KDGKVDFSFKSAQLSPQQEASFIQSYFADLERIAVSSRS----DVLKYKAG 876

Query: 747  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 806
             ++ +V++    +  D+G+ V  ++     GFI+  Q  G  +E+   ++A +LDV  A+
Sbjct: 877  DVVSAVVK----DIKDYGITVVTDD--GCTGFISSAQAKGVPLETDGKVEAVVLDVDTAK 930

Query: 807  RLVDLSLKTVFIDRFREA------------------NSNRQAQKKKRKREASKDLGVHQT 848
             ++DL ++   +   ++                      +Q   +  + +  + L   Q 
Sbjct: 931  SVLDLGVRPSLVAGAKKVLGGAGEKKKSKKKGKKGKKGKQQQDDEDDEDKPVEKLSQEQE 990

Query: 849  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 908
             +A +E+VKE+Y+VLS+ +    +  A+   YN ++ P ++   G      V+AL    T
Sbjct: 991  ADATIELVKEDYMVLSVGDGRLVV--AACKSYNDRESPFRKHFPGNGARVKVLALDEKHT 1048

Query: 909  -----------AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLK 957
                        G+        ++ +          S   +G++++A+I+ I   +L LK
Sbjct: 1049 FVQVLAEDNKGKGKDAKKQAKKADADKKQVAALSPASDATMGAIIKAKISAIHKAQLNLK 1108

Query: 958  FGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII----AKSNK--PDMKKSF-- 1009
               G  GR+HITEV   + +  ++ F  F   Q V  R+I    AK++   P    +F  
Sbjct: 1109 LAGGGRGRVHITEVEQPQEDGAKS-FDPFTKNQVVECRVIGYRDAKNHNFLPITHTNFTS 1167

Query: 1010 -LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1068
             + E S++   L+ S+           V +GQ++ G V  V+     + IS HL  ++ +
Sbjct: 1168 TIVEASMRAQDLSKSKKKVVPRLTADQVQVGQKLLGVVGAVEPNRMWIDISIHLSGRVSL 1227

Query: 1069 LDS-AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             ++       L+  Q  +  G  +T  V+++   K  L  +    Q+   +K +     +
Sbjct: 1228 QNAQPLNGDMLKSLQDMYEPGSPITTWVVAVKNGKVELSTIDPATQEEQENKEITTGRVH 1287

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
             +  IH                  L+V++G    GRVH      IC  D     D+   D
Sbjct: 1288 TKGSIH------------------LIVRLGRGKKGRVH------ICDVD-----DKFHAD 1318

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH-LE 1246
            P   +   + VK K +E  +            +   D   S   S++ T    P    + 
Sbjct: 1319 PFQRFALHELVKVKKVEAPKHSHRN-----EQQHKADCQLSMRPSEIDTSTAAPRDPIIA 1373

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               D+  + IV+GYV NVT  G F+ LSR + A+V ++NLSD +++   K F  G+LV G
Sbjct: 1374 SAADVKQDQIVRGYVCNVTDNGVFVALSRHVSARVKIANLSDLFIKDFTKVFKPGQLVKG 1433

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +VL V    K +E+TLK S +    +S+    ++L +G IV G IKRVES+G+F+TI+N+
Sbjct: 1434 KVLFVTDDGK-IELTLKRS-AVNPRESKPVRYNDLKIGQIVAGVIKRVESFGVFVTIDNS 1491

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
             L GL H+SE ++  +DN++ +Y  G+ VK KIL+++KEK+RISL +K S  +      +
Sbjct: 1492 KLSGLAHISECADAKIDNLDAVYNVGDAVKAKILRLNKEKKRISLTLKPSAVEG-----K 1546

Query: 1427 MSSEEESDEAIE 1438
             S+ E+ +E+ E
Sbjct: 1547 QSTGEDDEESGE 1558



 Score =  292 bits (748), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 141/298 (47%), Positives = 202/298 (67%), Gaps = 5/298 (1%)

Query: 1514 KNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1573
            K  +HA KK++E   +  R  EE++  K  P+TP +F+RLV  +PNSS+ WI+YMA+ L 
Sbjct: 1712 KRAKHAAKKQREAETR--RKEEEKVAGKKEPQTPMDFDRLVLQAPNSSYAWIRYMAYYLK 1769

Query: 1574 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1633
            + +++KAR++ +RAL TIN REE E++N+WVA  NLEN YG P    +  VF  A +  D
Sbjct: 1770 LTELDKARAVGKRALSTINFREEKERMNVWVALLNLENAYGTP--ATLNNVFTEACRQMD 1827

Query: 1634 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQ 1692
            P++++  L+ +YER+ + + ADEL   M KKF    +VWLR  +   K+ + +  + V++
Sbjct: 1828 PQRMYFHLVSIYERSHKFREADELFQVMCKKFNKVQRVWLRFAEFKFKRGRSKEARQVLE 1887

Query: 1693 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1752
            R+L SLPR  H+  I +  ILEFK G  +R R++FE +LS YPKR DLWSIYLDQE R+G
Sbjct: 1888 RSLKSLPRPDHVDTIVKFGILEFKQGDVERARTIFENVLSNYPKRVDLWSIYLDQEQRVG 1947

Query: 1753 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            D  +IR LFER I+L+L  KKM+F FK+YL++EK  G+   +E+VK+KA EYV S  A
Sbjct: 1948 DKGVIRALFERVITLNLSSKKMRFFFKRYLDFEKEHGDAGHVEHVKEKAREYVASKSA 2005


>gi|303313265|ref|XP_003066644.1| S1 RNA binding domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
 gi|240106306|gb|EER24499.1| S1 RNA binding domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1888

 Score =  445 bits (1144), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 374/1343 (27%), Positives = 666/1343 (49%), Gaps = 159/1343 (11%)

Query: 542  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 596
            V +G++V G ++  ++ P+ +  ++  +A G S G +P  H+AD  L+H    +   + G
Sbjct: 623  VTVGAVVKGKIEKLLMGPDGINGLLVSLADGIS-GLVPGVHMADAKLQHP---EKKFREG 678

Query: 597  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
             +   ++L ++ E   L L+ K SL++S   +  D   I P +   G   +I E G  ++
Sbjct: 679  LQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQ 738

Query: 656  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
            F G + GF P S+  +    D S+ + +GQ V  N L V++E GR+ +S K       D 
Sbjct: 739  FYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK-------DP 791

Query: 716  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
            S + + +    K A               E    G ++ G V E +   +++  E+   +
Sbjct: 792  SIVTDAY----KSAF--------------ENVHPGLLVSGTVFEKSSDDLLLKLEDGG-L 832

Query: 776  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL-KTVFIDRFREANSNRQAQKKK 834
               ++  QL+ A     +   A +    K   L+ LS+ KT  + +     S + A +K 
Sbjct: 833  IARLSAEQLSDAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKTALEKG 892

Query: 835  RKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIGYASVSDYNTQKFP 886
                  +DL ++ +V  +V  + ++ + +         LP+      + + +D+      
Sbjct: 893  TLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFG----- 947

Query: 887  QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV-------- 938
               F+  QS+  +V ++     A R +L +K + + E    +R K K++ ++        
Sbjct: 948  ---FMRTQSISCSVSSI--DQDAQRFILTMKPVEKEEEKHERRYKTKNTNELSVSNPVDQ 1002

Query: 939  ----------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNF 986
                      G + +A IT +K  +L +       GRI ++EV D+  ++ +       +
Sbjct: 1003 DIKSLDDFITGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRLY 1062

Query: 987  KIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1037
            K  Q V  +I+   +    K         K  ++ELS KPS L   ++    L +   V 
Sbjct: 1063 KPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLDPISLEK---VK 1119

Query: 1038 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1097
            +G    G+V  + ++   L IS  ++ +L I+D + + +   + +R F IG A+   V +
Sbjct: 1120 VGSSFLGFVNNIGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVAA 1179

Query: 1098 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1157
            ++ +K  L L  +    G S K + IS+      + +G I+ G+++K+      ++VQ+ 
Sbjct: 1180 VDVDKNRLDLTAK---HGASSKKLTISD------LSKGMILLGKVTKVTER--QVLVQLN 1228

Query: 1158 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1217
              L G +   ++                 D  S  +   F K  VL +         V++
Sbjct: 1229 ESLVGAIGLLDMA----------------DDYSKINPANFHKNAVLRVCV-------VDV 1265

Query: 1218 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
             + +    +S   S  LST +      +  I+ L  N IV+G+V+ +   G F+ L   +
Sbjct: 1266 DVPNKRVALSVRPSKVLSTSLPVEDPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNV 1325

Query: 1278 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1337
             A V +S+LSD Y++  + EF I ++V GR+  V+P +K+V++TLK S      +  +  
Sbjct: 1326 TAYVRVSDLSDSYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLK- 1384

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
            L +L  G IV G++++VE +G F++I+ T NL GLCH SE++E  + +   +Y  G+ VK
Sbjct: 1385 LKDLKPGQIVTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKITDARKLYEQGDIVK 1444

Query: 1397 VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAV 1456
             KILK+D +K +ISLG+K+SYF ND+D       E + E  EE G      +   + +  
Sbjct: 1445 AKILKIDLKKDQISLGLKASYFNNDSDEADSDMSEGASE--EESGDDELGGVALKAGIDD 1502

Query: 1457 QDMDMESED---GGSLVLAQIESRASVPPLEVNLDDEQPDMDNG-ISQNQGHTDEAKTID 1512
            +D+  E ED   GG  +   +   A    ++V + D   D +   ++     T ++  I 
Sbjct: 1503 EDLSDEGEDIIMGGVDLSNSLVQSADSDNVDVLMADADGDQEGALVTSGFDWTGDSYEIQ 1562

Query: 1513 EKNNRHA-------KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1565
            +  N  A         K+K+ R+ EI+      L+ + P+T D++ERL+   PNSS +W+
Sbjct: 1563 KGLNGAAFDSDDENMSKKKKRRKAEIQVDRTGDLDANGPQTVDDYERLLLGEPNSSLLWL 1622

Query: 1566 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1625
            KYMAF L + +V+KAR IAERAL++I++ ++ EK N+WVA  NLEN +G   ++++ +VF
Sbjct: 1623 KYMAFHLELGEVDKAREIAERALRSISLGQDTEKFNVWVAMLNLENTFGT--DDSLEEVF 1680

Query: 1626 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ 1684
            +RA QY D +++H  +  ++ ++++ + ADE+    + KKF  S  ++L     L     
Sbjct: 1681 KRACQYNDAQEIHEKMASIFIQSDKPEKADEIFQSALKKKFTQSPNLFLNYANFLFDTMA 1740

Query: 1685 --EGVQAVVQRALLSLPRHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDL 1740
              +  +A++ RA+ SLP H H++  S+   LEF++  G  +RGR++FEG+LS +PKR DL
Sbjct: 1741 APDRGRALLPRAMQSLPPHTHVELTSKFGQLEFRSLHGDVERGRTVFEGLLSSFPKRVDL 1800

Query: 1741 WSIYLDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLEYEK 1786
            W+I LD EI++GDVD +R LFER + +               L  K+ KF FKK+L +E+
Sbjct: 1801 WNILLDLEIKVGDVDQVRRLFERVLGIGRGVGADGSKAGMKKLKDKQAKFFFKKWLTFEE 1860

Query: 1787 SV--GEEERIEYVKQKAMEYVES 1807
             +  G+++ ++ VK +A EYV+S
Sbjct: 1861 KISNGDDKMVDEVKARAAEYVKS 1883



 Score =  177 bits (449), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 286/1276 (22%), Positives = 527/1276 (41%), Gaps = 123/1276 (9%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN------- 56
            + I  G K+ G V+ +   ++ + LP  L G      A+  IL  +IE    N       
Sbjct: 224  KRIVPGSKILGQVSSIGTHNISLALPNNLTGYVPWT-AVSKILKGKIEKLLKNAEDDEND 282

Query: 57   --------LLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQ 106
                     L +   +GQ +   V    D+   +GK  ++I LS+       GLS   + 
Sbjct: 283  EDTDEDDFDLKSYVRLGQYLRASVSSTTDNGHGLGKGKKRIELSVDPQEANAGLSKSDMI 342

Query: 107  EGMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID-VKPGLLLQGVVRSID 163
                + A V S+ED+G I+  GL   +  GF+    L  +  +  VK G +   VV   +
Sbjct: 343  VDSTVQASVLSVEDYGLIMDLGLEDGNTRGFMSSKELPPSVDLSQVKEGAVFLCVVTGHN 402

Query: 164  RTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
                V+ LS++    +            +I+  +PG      +  +  NG+  + +    
Sbjct: 403  AAGNVIKLSANLQKAASAKKSHYLSSAPTINTFLPGTAAEILLTEVTPNGMTGNIMGMLD 462

Query: 222  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRAPPSH 279
              VD  H  +T  T +    Y    K   R++   P+     +G ++  ++L  +  P+ 
Sbjct: 463  VVVDAVHSGSTDETKDLTKKYRPATKATGRLICTYPSDENPKLGFSILDHVL--KFSPTS 520

Query: 280  VK----------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL- 328
            V           +  I  + KV++VD  LGL + + +T      ++ IS V + +V  L 
Sbjct: 521  VADPQDRDDKPAISAIIPEVKVIKVDPTLGLYVQLGNT--KHYGFIHISRVKDGKVSSLS 578

Query: 329  --EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----I 382
              E  +K GS    RI+GF  L+ L    L+    +       DV  G VVKGK+    +
Sbjct: 579  SAEGPFKVGSHHEGRIIGFNALDNLFLLSLEKKVIDQPFLRLEDVTVGAVVKGKIEKLLM 638

Query: 383  AVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 439
              D   G +V    G+  L P  HM++ ++  P KKF+ G ++  R+L V  + +++ +T
Sbjct: 639  GPDGINGLLVSLADGISGLVPGVHMADAKLQHPEKKFREGLQVTARILSVNLEKRQLRLT 698

Query: 440  HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 499
             KK+L+ S+ AI   Y +      + G    I+++G  ++FY  V+GF P SE+      
Sbjct: 699  LKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIK 758

Query: 500  EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDV 554
            +PS  + +GQVV    +S      R+ +S    P+ V++      + V  G LVSG V  
Sbjct: 759  DPSQHFSIGQVVNVNALSVDAEQGRLVVS-CKDPSIVTDAYKSAFENVHPGLLVSGTVFE 817

Query: 555  VTPNAVVVYVIAKGYSKGTIPTEHLADHL-EHATVMKSVIKPGYEFDQLLVLDNESSNLL 613
             + + +++  +  G     +  E L+D     A    + ++ G +   LL+L    ++ L
Sbjct: 818  KSSDDLLLK-LEDGGLIARLSAEQLSDAAPSKAAANLARLRVGQKLHDLLILSIRKTHRL 876

Query: 614  L--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
            +  S K SL  + ++  LP+    +  NS V G V NI + G FV FLG LTGF P+   
Sbjct: 877  IQVSNKPSLKTALEKGTLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLV 936

Query: 670  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 729
             D         +   QS+  ++  ++ +  R  L++K             +     E   
Sbjct: 937  DDEHLTKADFGFMRTQSISCSVSSIDQDAQRFILTMKPVEKEEEKHERRYKTKNTNE--- 993

Query: 730  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV----------SFEEHSDVYGFI 779
             L  S     ++K ++ FI G V + ++    D  + V             E  D +  I
Sbjct: 994  -LSVSNPVDQDIKSLDDFITGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDI 1052

Query: 780  THHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 837
               +      +   V+   IL V  A+  + + +S +T  +  F  +      +      
Sbjct: 1053 KDRKQPLRLYKPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLDP 1112

Query: 838  EASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQS 895
             + + + V  +    V  + ++ L L++ P     +    +S D       ++ F  G +
Sbjct: 1113 ISLEKVKVGSSFLGFVNNIGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSA 1172

Query: 896  VIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELR 955
            +  TV A+       RL L  K       +SSK+    S    G ++  ++T++   ++ 
Sbjct: 1173 LKVTVAAVDVDKN--RLDLTAK-----HGASSKKL-TISDLSKGMILLGKVTKVTERQVL 1224

Query: 956  LKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSI 1015
            ++      G I + ++ DD S +    F        V    +   + P+ + +    LS+
Sbjct: 1225 VQLNESLVGAIGLLDMADDYSKINPANFHK----NAVLRVCVVDVDVPNKRVA----LSV 1276

Query: 1016 KPSMLTVSEIGSKLLFEECDVSIGQR------VTGYVYKVDNEWALLTISRHLKAQLFIL 1069
            +PS +    + + L  E+ +++   R      V G+V ++ +    +T+  ++ A + + 
Sbjct: 1277 RPSKV----LSTSLPVEDPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNVTAYVRVS 1332

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
            D     S L+E+Q  F I + V G +  ++ E K +++ L+      S    D       
Sbjct: 1333 D--LSDSYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQ-----SALDPDYKPPLKL 1385

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
              +  G IV G++ K+      + +    +L G  H +E+    ++           D  
Sbjct: 1386 KDLKPGQIVTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKIT-----------DAR 1434

Query: 1190 SGYDEGQFVKCKVLEI 1205
              Y++G  VK K+L+I
Sbjct: 1435 KLYEQGDIVKAKILKI 1450



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 153
            +SLE V+ G     +V +I D    L+   PS  G LP  +++++  +  D+K     G 
Sbjct: 1113 ISLEKVKVGSSFLGFVNNIGDDCLWLNIS-PSVRGKLPIMDISDDLALAGDIKRTFPIGS 1171

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
             L+  V ++D  +  + L++     SK +T       I  L  GM++  +V  + E  V+
Sbjct: 1172 ALKVTVAAVDVDKNRLDLTAKHGASSKKLT-------ISDLSKGMILLGKVTKVTERQVL 1224

Query: 214  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD---PTSRAVGLTLNPY- 269
            +       G + +  + + +   N     N HK    R+  VD   P  R V L++ P  
Sbjct: 1225 VQLNESLVGAIGLLDMADDYSKIN---PANFHKNAVLRVCVVDVDVPNKR-VALSVRPSK 1280

Query: 270  LLHNRAPPSHVKVGDIYDQSKVVRVDRG-------LGLLLDIPSTPVSTPAYVTISDVAE 322
            +L    P    ++  I D+ KV  + RG       +GL + +     +  AYV +SD+++
Sbjct: 1281 VLSTSLPVEDPEIASI-DRLKVNDIVRGFVRRIADIGLFVTLGH---NVTAYVRVSDLSD 1336

Query: 323  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKG 379
              +++ + +++    VR RI             LK SA +          D+KPG +V G
Sbjct: 1337 SYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTG 1396

Query: 380  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 437
            KV  V+ FGA V   G   +  LC    M+E +I    K ++ G  +  ++L +  K+  
Sbjct: 1397 KVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKITDARKLYEQGDIVKAKILKIDLKKDQ 1456

Query: 438  VT 439
            ++
Sbjct: 1457 IS 1458


>gi|320036441|gb|EFW18380.1| rRNA biogenesis protein RRP5 [Coccidioides posadasii str. Silveira]
          Length = 1830

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 375/1343 (27%), Positives = 665/1343 (49%), Gaps = 159/1343 (11%)

Query: 542  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 596
            V +G++V G ++  ++ P+ +  ++  +A G S G +P  H+AD  L+H    +   + G
Sbjct: 565  VTVGAVVKGKIEKLLMGPDGINGLLVSLADGIS-GLVPGVHMADTKLQHP---EKKFREG 620

Query: 597  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
             +   ++L ++ E   L L+ K SL++S   +  D   I P +   G   +I E G  ++
Sbjct: 621  LQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQ 680

Query: 656  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
            F G + GF P S+  +    D S+ + +GQ V  N L V++E GR+ +S K       D 
Sbjct: 681  FYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK-------DP 733

Query: 716  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
            S + + +    K A               E    G ++ G V E +   +++  E    +
Sbjct: 734  SIVTDAY----KSAF--------------ENVHPGLLVSGTVFEKSSDDLLLKLEAGG-L 774

Query: 776  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL-KTVFIDRFREANSNRQAQKKK 834
               ++  QL+ A     +   A +    K   L+ LS+ KT  + +     S + A +K 
Sbjct: 775  IARLSAEQLSDAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKTALEKG 834

Query: 835  RKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIGYASVSDYNTQKFP 886
                  +DL ++ +V  +V  + ++ + +         LP+      + + +D+      
Sbjct: 835  TLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFG----- 889

Query: 887  QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV-------- 938
               F+  QS+  +V ++     A R +L +K + + E    +R K K++ ++        
Sbjct: 890  ---FMRTQSISCSVSSI--DQDAQRFILTMKPVEKEEEKHERRYKTKNTNELSVSNPVDQ 944

Query: 939  ----------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNF 986
                      G + +A IT +K  +L +       GRI ++EV D+  ++ +       +
Sbjct: 945  DIKSLDDFITGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRLY 1004

Query: 987  KIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1037
            K  Q V  +I+   +    K         K  ++ELS KPS L   ++    L +   V 
Sbjct: 1005 KPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLDPISLEK---VK 1061

Query: 1038 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1097
            +G    G+V  + ++   L IS  ++ +L I+D + + +   + +R F IG A+   V +
Sbjct: 1062 VGSSFLGFVNNIGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVAA 1121

Query: 1098 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1157
            ++ +K  L L  +    G S K + IS+      + +G I+ G+++K+      ++VQ+ 
Sbjct: 1122 VDVDKNRLDLTAK---HGASSKKLTISD------LSKGMILLGKVTKVTER--QVLVQLN 1170

Query: 1158 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1217
              L G +   ++                 D  S  +   F K  VL +         V++
Sbjct: 1171 ESLVGAIGLLDMA----------------DDYSKINPANFHKNAVLRVCV-------VDV 1207

Query: 1218 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
             + +    +S   S  LST +      +  I+ L  N IV+G+V+ +   G F+ L   +
Sbjct: 1208 DVPNKRVALSVRPSKVLSTSLPVEDPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNV 1267

Query: 1278 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1337
             A V +S+LSD Y++  + EF I ++V GR+  V+P +K+V++TLK S      +  +  
Sbjct: 1268 TAYVRVSDLSDSYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLK- 1326

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
            L +L  G IV G++++VE +G F++I+ T NL GLCH SE++E  V +   +Y  G+ VK
Sbjct: 1327 LKDLKPGQIVTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVK 1386

Query: 1397 VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAV 1456
             KILK+D +K +ISLG+K+SYF ND+D       E + E  EE G      +   + +  
Sbjct: 1387 AKILKIDLKKDQISLGLKASYFNNDSDEADSDMSEGASE--EESGDDELGGVALKAGIDD 1444

Query: 1457 QDMDMESED---GGSLVLAQIESRASVPPLEVNLDDEQPDMDNG-ISQNQGHTDEAKTID 1512
            +D+  E ED   GG  +   +   A    ++V + D   D +   ++     T ++  I 
Sbjct: 1445 EDLSDEGEDIIMGGVDLSNSLVQSADSDNVDVLMADADGDQEGALVTSGFDWTGDSYEIQ 1504

Query: 1513 EKNNRHA-------KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1565
            +  N  A         K+K+ R+ EI+      L+ + P+T D++ERL+   PNSS +W+
Sbjct: 1505 KGLNGAAFDSDDENMSKKKKRRKAEIQVDRTGDLDANGPQTVDDYERLLLGEPNSSLLWL 1564

Query: 1566 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1625
            KYMAF L + +V+KAR IAERAL++I++ ++ EK N+WVA  NLEN +G   ++++ +VF
Sbjct: 1565 KYMAFHLELGEVDKAREIAERALRSISLGQDTEKFNVWVAMLNLENTFGT--DDSLEEVF 1622

Query: 1626 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ 1684
            +RA QY D +++H  +  ++ ++++ + ADE+    + KKF  S  ++L     L     
Sbjct: 1623 KRACQYNDAQEIHEKMASIFIQSDKPEKADEIFQSALKKKFTQSPNLFLNYANFLFDTMA 1682

Query: 1685 --EGVQAVVQRALLSLPRHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDL 1740
              +  +A++ RA+ SLP H H++  S+   LEF++  G  +RGR++FEG+LS +PKR DL
Sbjct: 1683 APDRGRALLPRAMQSLPPHTHVELTSKFGQLEFRSLHGDVERGRTVFEGLLSSFPKRVDL 1742

Query: 1741 WSIYLDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLEYEK 1786
            W+I LD EI++GDVD +R LFER + +               L  K+ KF FKK+L +E+
Sbjct: 1743 WNILLDLEIKVGDVDQVRRLFERVLGIGRGVGADGSKAGMKKLKDKQAKFFFKKWLTFEE 1802

Query: 1787 SV--GEEERIEYVKQKAMEYVES 1807
             +  G+++ ++ VK +A EYV+S
Sbjct: 1803 KISNGDDKMVDEVKARAAEYVKS 1825



 Score =  181 bits (460), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 291/1278 (22%), Positives = 527/1278 (41%), Gaps = 127/1278 (9%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL------ 57
            + I  G K+ G V+ +   ++ + LP  L G      A+  IL  +IE    N       
Sbjct: 166  KRIVPGSKILGQVSSIGTHNISLALPNNLTGYVPWT-AVSKILKGKIEKLLKNAEDDEID 224

Query: 58   ---------LPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQ 106
                     L +   +GQ +   V    D+   +GK  ++I LS+       GLS   + 
Sbjct: 225  EDTDEDDFNLKSYVRLGQYLRASVSSTTDNGHGLGKGKKRIELSVDPQEANAGLSKSDMI 284

Query: 107  EGMVLTAYVKSIEDHGYILHFGLPSFT--GFLPRNNLAENSGID---VKPGLLLQGVVRS 161
                + A V S+ED+G I+  GL      GF+    L    G+D   VK G +   VV  
Sbjct: 285  VDSTVQASVLSVEDYGLIMDLGLEDVNTRGFMSSKELP--PGVDLSQVKEGAVFLCVVTG 342

Query: 162  IDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 219
             +    V+ LS++    +            +I+  +PG      +  +  NG+    +  
Sbjct: 343  HNAAGNVIKLSANLQKAASAKKSHYLSSAPTINTFLPGTAAEILLTEVTPNGMTGKIMGM 402

Query: 220  FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRAPP 277
                VD  H  +T  T +    Y    K   R++   P+     +G ++  ++L  +  P
Sbjct: 403  LDVVVDAVHSGSTDETKDLTKKYRPATKATGRLICTYPSDENPKLGFSILDHVL--KFSP 460

Query: 278  SHVK----------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
            + V           +  I  + KV++VD  LGL + + +T      +V IS V + +V  
Sbjct: 461  TSVADPQDRDDKPAISAIIPEVKVIKVDPTLGLYVQLGNT--KHYGFVHISRVKDGKVSS 518

Query: 328  L---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--- 381
            L   E  +K GS    RI+GF  L+ L    L+    +       DV  G VVKGK+   
Sbjct: 519  LSSAEGPFKVGSHHEGRIIGFNALDNLFLLSLEKKVIDQPFLRLEDVTVGAVVKGKIEKL 578

Query: 382  -IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRIT 437
             +  D   G +V    G+  L P  HM++ ++  P KKF+ G ++  R+L V  + +++ 
Sbjct: 579  LMGPDGINGLLVSLADGISGLVPGVHMADTKLQHPEKKFREGLQVTARILSVNLEKRQLR 638

Query: 438  VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 497
            +T KK+L+ S+ AI   Y +      + G    I+++G  ++FY  V+GF P SE+    
Sbjct: 639  LTLKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQFYGAVRGFLPVSEMSEAY 698

Query: 498  GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVV 552
              +PS  + +GQVV    +S      R+ +S    P+ V++      + V  G LVSG V
Sbjct: 699  IKDPSQHFSIGQVVNVNALSVDAEQGRLVVS-CKDPSIVTDAYKSAFENVHPGLLVSGTV 757

Query: 553  DVVTPNAVVVYVIAKGYSKGTIPTEHLADHL-EHATVMKSVIKPGYEFDQLLVLDNESSN 611
               + + +++ + A G     +  E L+D     A    + ++ G +   LL+L    ++
Sbjct: 758  FEKSSDDLLLKLEAGGLI-ARLSAEQLSDAAPSKAAANLARLRVGQKLHDLLILSIRKTH 816

Query: 612  LLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 667
             L+  S K SL  + ++  LP+    +  NS V G V NI + G FV FLG LTGF P+ 
Sbjct: 817  RLIQVSNKPSLKTALEKGTLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKR 876

Query: 668  KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 727
               D         +   QS+  ++  ++ +  R  L++K             +     E 
Sbjct: 877  LVDDEHLTKADFGFMRTQSISCSVSSIDQDAQRFILTMKPVEKEEEKHERRYKTKNTNE- 935

Query: 728  IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV----------SFEEHSDVYG 777
               L  S     ++K ++ FI G V + ++    D  + V             E  D + 
Sbjct: 936  ---LSVSNPVDQDIKSLDDFITGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWE 992

Query: 778  FITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 835
             I   +      +   V+   IL V  A+  + + +S +T  +  F  +      +    
Sbjct: 993  DIKDRKQPLRLYKPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDL 1052

Query: 836  KREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNG 893
               + + + V  +    V  + ++ L L++ P     +    +S D       ++ F  G
Sbjct: 1053 DPISLEKVKVGSSFLGFVNNIGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIG 1112

Query: 894  QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLE 953
             ++  TV A+       RL L  K       +SSK+    S    G ++  ++T++   +
Sbjct: 1113 SALKVTVAAVDVDKN--RLDLTAK-----HGASSKKL-TISDLSKGMILLGKVTKVTERQ 1164

Query: 954  LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1013
            + ++      G I + ++ DD S +    F        V    +   + P+ + +    L
Sbjct: 1165 VLVQLNESLVGAIGLLDMADDYSKINPANFHK----NAVLRVCVVDVDVPNKRVA----L 1216

Query: 1014 SIKPSMLTVSEIGSKLLFEECDVSIGQR------VTGYVYKVDNEWALLTISRHLKAQLF 1067
            S++PS +    + + L  E+ +++   R      V G+V ++ +    +T+  ++ A + 
Sbjct: 1217 SVRPSKV----LSTSLPVEDPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNVTAYVR 1272

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
            + D     S L+E+Q  F I + V G +  ++ E K +++ L+      S    D     
Sbjct: 1273 VSD--LSDSYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQ-----SALDPDYKPPL 1325

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
                +  G IV G++ K+      + +    +L G  H +E+    V+           D
Sbjct: 1326 KLKDLKPGQIVTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVT-----------D 1374

Query: 1188 PLSGYDEGQFVKCKVLEI 1205
                Y++G  VK K+L+I
Sbjct: 1375 ARKLYEQGDIVKAKILKI 1392



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 153
            +SLE V+ G     +V +I D    L+   PS  G LP  +++++  +  D+K     G 
Sbjct: 1055 ISLEKVKVGSSFLGFVNNIGDDCLWLNIS-PSVRGKLPIMDISDDLALAGDIKRTFPIGS 1113

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
             L+  V ++D  +  + L++     SK +T       I  L  GM++  +V  + E  V+
Sbjct: 1114 ALKVTVAAVDVDKNRLDLTAKHGASSKKLT-------ISDLSKGMILLGKVTKVTERQVL 1166

Query: 214  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD---PTSRAVGLTLNPY- 269
            +       G + +  + + +   N     N HK    R+  VD   P  R V L++ P  
Sbjct: 1167 VQLNESLVGAIGLLDMADDYSKIN---PANFHKNAVLRVCVVDVDVPNKR-VALSVRPSK 1222

Query: 270  LLHNRAPPSHVKVGDIYDQSKVVRVDRG-------LGLLLDIPSTPVSTPAYVTISDVAE 322
            +L    P    ++  I D+ KV  + RG       +GL + +     +  AYV +SD+++
Sbjct: 1223 VLSTSLPVEDPEIASI-DRLKVNDIVRGFVRRIADIGLFVTLGH---NVTAYVRVSDLSD 1278

Query: 323  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKG 379
              +++ + +++    VR RI             LK SA +          D+KPG +V G
Sbjct: 1279 SYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTG 1338

Query: 380  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 437
            KV  V+ FGA V   G   +  LC    M+E ++    K ++ G  +  ++L +  K+  
Sbjct: 1339 KVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQ 1398

Query: 438  VT 439
            ++
Sbjct: 1399 IS 1400



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 122/286 (42%), Gaps = 52/286 (18%)

Query: 1151 GLVVQIG-PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
            GL VQ+G    YG VH + +K+  VS   S   EG F  +  + EG+ +    L+     
Sbjct: 492  GLYVQLGNTKHYGFVHISRVKDGKVSSLSSA--EGPF-KVGSHHEGRIIGFNALD----- 543

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS--- 1266
               F + L  +                 +D P     ++ED++   +V+G ++ +     
Sbjct: 544  -NLFLLSLEKKV----------------IDQP---FLRLEDVTVGAVVKGKIEKLLMGPD 583

Query: 1267 --KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
               G  + L+  +   V   +++D  ++ PEK+F  G  V  R+LSV    +++ +TLK 
Sbjct: 584  GINGLLVSLADGISGLVPGVHMADTKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKK 643

Query: 1325 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV--------GLCHVSE 1376
            S     S+S I         DI  G     +S G F++I+    V        G   VSE
Sbjct: 644  S--LLHSESAIWK----DYRDIAPGN----QSPGTFVSIQENGAVIQFYGAVRGFLPVSE 693

Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
            +SE ++ +    +  G+ V V  L VD E+ R+ +  K      DA
Sbjct: 694  MSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCKDPSIVTDA 739



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 149/378 (39%), Gaps = 68/378 (17%)

Query: 1053 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL--- 1109
            +  + ISR    ++  L SA  P         F +G    G ++  N    L  L L   
Sbjct: 503  YGFVHISRVKDGKVSSLSSAEGP---------FKVGSHHEGRIIGFNALDNLFLLSLEKK 553

Query: 1110 ---RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL---SGVGGLVVQIGPHLYGR 1163
               +PF   + D TV             G +V G+I K+L    G+ GL+V +   + G 
Sbjct: 554  VIDQPFLR-LEDVTV-------------GAVVKGKIEKLLMGPDGINGLLVSLADGISGL 599

Query: 1164 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1223
            V    + +  +  P     E +F       EG  V  ++L ++   R    + L+L+ SL
Sbjct: 600  VPGVHMADTKLQHP-----EKKFR------EGLQVTARILSVNLEKR---QLRLTLKKSL 645

Query: 1224 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1283
                S    D                D++P     G   ++   G  I     +   + +
Sbjct: 646  LHSESAIWKDY--------------RDIAPGNQSPGTFVSIQENGAVIQFYGAVRGFLPV 691

Query: 1284 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1343
            S +S+ Y++ P + F IG++V    LSV+    R+ V+ K  D    + +  +   N+H 
Sbjct: 692  SEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK--DPSIVTDAYKSAFENVHP 749

Query: 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE----DHVDNIETIYRAGEKV-KVK 1398
            G +V G +    S  L + +E   L+      +LS+        N+  + R G+K+  + 
Sbjct: 750  GLLVSGTVFEKSSDDLLLKLEAGGLIARLSAEQLSDAAPSKAAANLARL-RVGQKLHDLL 808

Query: 1399 ILKVDKEKRRISLGMKSS 1416
            IL + K  R I +  K S
Sbjct: 809  ILSIRKTHRLIQVSNKPS 826


>gi|119191894|ref|XP_001246553.1| hypothetical protein CIMG_00324 [Coccidioides immitis RS]
 gi|392864216|gb|EAS34971.2| rRNA biogenesis protein RRP5 [Coccidioides immitis RS]
          Length = 1829

 Score =  442 bits (1136), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 376/1344 (27%), Positives = 662/1344 (49%), Gaps = 161/1344 (11%)

Query: 542  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 596
            V +G++V G ++  ++ P+ +  ++  +A G S G +P  H+AD  L+H    +   + G
Sbjct: 564  VTVGAVVKGKIEKLLMGPDGINGLLVSLADGIS-GLVPGMHMADTKLQHP---EKKFREG 619

Query: 597  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
             +   ++L ++ E   L L+ K SL++S   +  D   I P +   G   +I E G  ++
Sbjct: 620  LQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQ 679

Query: 656  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
            F G + GF P S+  +    D S+ + +GQ V  N L V++E GR+ +S K       D 
Sbjct: 680  FYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK-------DP 732

Query: 716  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV--VSFEEHS 773
            S + + +         +S+  N      V G +     +  + +  D G++  +S E+ S
Sbjct: 733  SIVTDAY---------KSAFENVHPGLLVSGTVFEKSSDDLLLKLEDGGLIARLSAEQLS 783

Query: 774  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 833
            D     +   LA   V    +    IL + K  RL+ +S K           S + A +K
Sbjct: 784  DAAPSKSAANLARLRV-GQKLHDLLILSIRKTHRLIQVSNKP----------SLKAALEK 832

Query: 834  KRKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIGYASVSDYNTQKF 885
                   +DL ++ +V  +V  + ++ + +         LP+      + + +D+     
Sbjct: 833  GTLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFG---- 888

Query: 886  PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS---------- 935
                F+  QS+  +V ++     A R +L +  + + E    +R K K++          
Sbjct: 889  ----FMRTQSISCSVSSI--DQDAQRFILTMNPVEKEEEKHERRYKTKNTNELSVSNPVD 942

Query: 936  --------YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSN 985
                    +  G + +A IT +K  +L +       GRI ++EV D+  ++ +       
Sbjct: 943  QDIKSLDDFKTGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRL 1002

Query: 986  FKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDV 1036
            +K  Q V  +I+   +    K         K  ++ELS KPS L   ++G   L +   V
Sbjct: 1003 YKPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLGPISLEK---V 1059

Query: 1037 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1096
             +G    G+V  + ++   L IS  ++ +L I+D + + +   + +R F IG A+   V 
Sbjct: 1060 KVGNSFLGFVNNMGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVA 1119

Query: 1097 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1156
            +++ +K  L L  +    G S K + IS+      + +G I+ G+++K+      ++VQ+
Sbjct: 1120 AVDVDKNRLDLTAK---HGASSKKLTISD------LSKGMILLGKVTKVTER--QVLVQL 1168

Query: 1157 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1216
               L G +   ++                 D  S  +   F K  VL +         V+
Sbjct: 1169 NESLVGAIGLLDMA----------------DDYSKINPANFHKNAVLRVCV-------VD 1205

Query: 1217 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1276
            + + +    +S   S  LS  +      +  I+ L  N IV+G+V+ V   G F+ L   
Sbjct: 1206 VDVPNKRVALSVRPSKVLSASLPVEDPEIASIDRLKVNDIVRGFVRRVADIGLFVTLGHN 1265

Query: 1277 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1336
            + A V +S+LSD Y++  + EF I ++V GR+  V+  +K+V++TLK S      +  + 
Sbjct: 1266 VTAYVRVSDLSDSYLKEWQDEFQIDQIVRGRITLVDTEAKKVQMTLKQSALDPDYKPPLK 1325

Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             L +L  G IV G++++VE +G F++I+ T NL GLCH SE++E  V +   +Y  G+ V
Sbjct: 1326 -LKDLKPGQIVTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIV 1384

Query: 1396 KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA 1455
            K KILK+D +K +ISLG+K+SYF ND+D       E + E  EE G      +     + 
Sbjct: 1385 KAKILKIDLKKDQISLGLKASYFNNDSDEADSDMSEGASE--EESGDDELGGVALEPGID 1442

Query: 1456 VQDMDMESED---GGSLVLAQIESRASVPPLEVNLDDEQPDMDNG-ISQNQGHTDEAKTI 1511
             +D+  E ED   GG  +   +   A    ++V + D   D +   ++     T ++  I
Sbjct: 1443 DEDLSDEGEDIIMGGVDLSNSLVQSADSDNVDVLMADADGDQEGALVTSGFDWTGDSYEI 1502

Query: 1512 DEKNNRHA-------KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1564
             +  N  A         K+K+ R+ EI+      L+ + P+T D++ERL+   PNSS +W
Sbjct: 1503 QKGLNGAAFDSDDENMSKKKKRRKAEIQVDRTGDLDANGPQTVDDYERLLLGEPNSSLLW 1562

Query: 1565 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1624
            +KYMAF L + +V+KAR IAERAL++I++ ++ EK N+WVA  NLEN +G   ++++ +V
Sbjct: 1563 LKYMAFHLELGEVDKAREIAERALRSISLGQDTEKFNVWVAMLNLENTFGT--DDSLEEV 1620

Query: 1625 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQ 1683
            F+RA QY D +++H  +  ++ ++++ + ADE+    + KKF  S  ++L     L    
Sbjct: 1621 FKRACQYNDAQEIHEKMASIFIQSDKPEKADEIFQSALKKKFTQSPNLFLNYANFLFDTM 1680

Query: 1684 Q--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTD 1739
               +  +A++ RA+ SLP H H++  S+   LEF++  G  +RGR++FEG+LS +PKR D
Sbjct: 1681 AAPDRGRALLPRAMQSLPPHTHVELTSKFGQLEFRSPHGDVERGRTVFEGLLSSFPKRVD 1740

Query: 1740 LWSIYLDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLEYE 1785
            LW+I LD EI++GDVD +R LFER + +               L  K+ KF FKK+L +E
Sbjct: 1741 LWNILLDLEIKVGDVDQVRRLFERVLGIGRGVGADGSKAGMKKLKDKQAKFFFKKWLTFE 1800

Query: 1786 KSV--GEEERIEYVKQKAMEYVES 1807
            + +  G+++ ++ VK +A EYV+S
Sbjct: 1801 EKISNGDDKMVDEVKARAAEYVKS 1824



 Score =  169 bits (427), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 193/760 (25%), Positives = 328/760 (43%), Gaps = 69/760 (9%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN------- 56
           + I  G K+ G V+ +   ++ + LP  L G      A+  IL  +IE    N       
Sbjct: 165 KRIVPGSKILGQVSSIGTHNISLALPNNLTGYVPWT-AVSKILKGKIEKLLKNGEDDEND 223

Query: 57  --------LLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQ 106
                    L +   +GQ +   V    D+   +GK  ++I LS+       GLS   + 
Sbjct: 224 EDTDDDDFDLKSYVRLGQYLRASVSSTTDNGHGLGKGKKRIELSVDPQEANAGLSKSDMI 283

Query: 107 EGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI-DVKPGLLLQGVVRSID 163
               + A V S+ED+G I+  GL      GF+    L  +  +  VK G +   VV   +
Sbjct: 284 VDSTVQASVLSVEDYGLIMDLGLEDGETRGFMSSKELPPSVDLSQVKEGAVFLCVVTGHN 343

Query: 164 RTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
               V+ LS+D    +            +I+  +PG      +  +  NG+    +    
Sbjct: 344 AAGNVIKLSADLQKAASAKKSHYLSSAPTINTFLPGTAAEILLTEVTPNGMTGKIMGMLD 403

Query: 222 GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRAPPSH 279
             VD  H  +T  T +    Y    K   R++   P+     +G ++  ++L  +  P+ 
Sbjct: 404 VVVDAVHSGSTDETKDLTKKYRPATKAKGRLICTYPSDENPKLGFSILDHVL--KFSPTS 461

Query: 280 VK----------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL- 328
           V           +  I  + KV+++D  LGL + + +T      +V IS V + +V  L 
Sbjct: 462 VADPQDRDDKPAISAIIPEVKVIKIDPTLGLYVQLGNT--KHYGFVHISRVKDGKVSSLS 519

Query: 329 --EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----I 382
             E  +K GS    RI+GF  L+ L    L+    +       DV  G VVKGK+    +
Sbjct: 520 SAEGPFKVGSHHEGRIIGFNALDNLFLLSLEKKVIDQPFLRLEDVTVGAVVKGKIEKLLM 579

Query: 383 AVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 439
             D   G +V    G+  L P  HM++ ++  P KKF+ G ++  R+L V  + +++ +T
Sbjct: 580 GPDGINGLLVSLADGISGLVPGMHMADTKLQHPEKKFREGLQVTARILSVNLEKRQLRLT 639

Query: 440 HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 499
            KK+L+ S+ AI   Y +      + G    I+++G  ++FY  V+GF P SE+      
Sbjct: 640 LKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIK 699

Query: 500 EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDV 554
           +PS  + +GQVV    +S      R+ +S    P+ V++      + V  G LVSG V  
Sbjct: 700 DPSQHFSIGQVVNVNALSVDAEQGRLVVS-CKDPSIVTDAYKSAFENVHPGLLVSGTVFE 758

Query: 555 VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV-----IKPGYEFDQLLVLDNES 609
            + + +++ +       G +     A+ L  A   KS      ++ G +   LL+L    
Sbjct: 759 KSSDDLLLKL-----EDGGLIARLSAEQLSDAAPSKSAANLARLRVGQKLHDLLILSIRK 813

Query: 610 SNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 665
           ++ L+  S K SL  + ++  LP+    +  NS V G V NI + G FV FLG LTGF P
Sbjct: 814 THRLIQVSNKPSLKAALEKGTLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLP 873

Query: 666 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
           +    D         +   QS+  ++  ++ +  R  L++
Sbjct: 874 KRLVDDEHLTKADFGFMRTQSISCSVSSIDQDAQRFILTM 913



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 153
            +SLE V+ G     +V ++ D    L+   PS  G LP  +++++  +  D+K     G 
Sbjct: 1054 ISLEKVKVGNSFLGFVNNMGDDCLWLNIS-PSVRGKLPIMDISDDLALAGDIKRTFPIGS 1112

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
             L+  V ++D  +  + L++     SK +T       I  L  GM++  +V  + E  V+
Sbjct: 1113 ALKVTVAAVDVDKNRLDLTAKHGASSKKLT-------ISDLSKGMILLGKVTKVTERQVL 1165

Query: 214  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD---PTSRAVGLTLNPY- 269
            +       G + +  + + +   N     N HK    R+  VD   P  R V L++ P  
Sbjct: 1166 VQLNESLVGAIGLLDMADDYSKIN---PANFHKNAVLRVCVVDVDVPNKR-VALSVRPSK 1221

Query: 270  LLHNRAPPSHVKVGDIYDQSKVVRVDRG-------LGLLLDIPSTPVSTPAYVTISDVAE 322
            +L    P    ++  I D+ KV  + RG       +GL + +     +  AYV +SD+++
Sbjct: 1222 VLSASLPVEDPEIASI-DRLKVNDIVRGFVRRVADIGLFVTLGH---NVTAYVRVSDLSD 1277

Query: 323  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKG 379
              +++ + +++    VR RI             LK SA +          D+KPG +V G
Sbjct: 1278 SYLKEWQDEFQIDQIVRGRITLVDTEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTG 1337

Query: 380  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 437
            KV  V+ FGA V   G   +  LC    M+E ++    K ++ G  +  ++L +  K+  
Sbjct: 1338 KVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQ 1397

Query: 438  VT 439
            ++
Sbjct: 1398 IS 1399



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 102/492 (20%), Positives = 189/492 (38%), Gaps = 79/492 (16%)

Query: 943  QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1000
            + ++ +I P L L ++ G   H G +HI+ V D K + + +    FK+G     RII  +
Sbjct: 480  EVKVIKIDPTLGLYVQLGNTKHYGFVHISRVKDGKVSSLSSAEGPFKVGSHHEGRIIGFN 539

Query: 1001 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV----DNEWALL 1056
               ++   FL  L  K        +  +      DV++G  V G + K+    D    LL
Sbjct: 540  ALDNL---FLLSLEKK--------VIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGINGLL 588

Query: 1057 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP----F 1112
             +S        +       ++LQ  +++F  G  VT  +LS+N EK+ LRL L+      
Sbjct: 589  -VSLADGISGLVPGMHMADTKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKKSLLHS 647

Query: 1113 QDGISDKTVDISNDNMQ--TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1170
            +  I     DI+  N    TF+   +              G V+Q    + G +  +E+ 
Sbjct: 648  ESAIWKDYRDIAPGNQSPGTFVSIQE-------------NGAVIQFYGAVRGFLPVSEMS 694

Query: 1171 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1230
               +            DP   +  GQ V    L +    +G   V            S  
Sbjct: 695  EAYIK-----------DPSQHFSIGQVVNVNALSVD-AEQGRLVV------------SCK 730

Query: 1231 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDG 1289
               + TD      +    E++ P ++V G V   +S    + L    L A++    LSD 
Sbjct: 731  DPSIVTDA-----YKSAFENVHPGLLVSGTVFEKSSDDLLLKLEDGGLIARLSAEQLSDA 785

Query: 1290 YVESPEKEFP-IGKLVAGR------VLSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNL 1341
               +P K    + +L  G+      +LS+    + ++V+ K S      +  +     +L
Sbjct: 786  ---APSKSAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKAALEKGTLPAKFEDL 842

Query: 1342 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1401
             +   V G ++ +   G+F+      L G      + ++H+   +  +   + +   +  
Sbjct: 843  KLNSSVTGLVRNITDDGIFVEFLG-GLTGFLPKRLVDDEHLTKADFGFMRTQSISCSVSS 901

Query: 1402 VDKEKRRISLGM 1413
            +D++ +R  L M
Sbjct: 902  IDQDAQRFILTM 913


>gi|325088403|gb|EGC41713.1| ribosomal RNA processing protein RRP5 [Ajellomyces capsulatus H88]
          Length = 1817

 Score =  441 bits (1134), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 396/1439 (27%), Positives = 687/1439 (47%), Gaps = 196/1439 (13%)

Query: 468  ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 523
            +TK+E   G +V+F +   GF   S L  D     SS    Y V    + RI+     S 
Sbjct: 477  VTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVG---FSA 533

Query: 524  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 574
              NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 534  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 592

Query: 575  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 632
            P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 593  PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 649

Query: 633  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 650  DILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 709

Query: 693  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 752
            +V++E  ++ +S K    S+       EH              H G+             
Sbjct: 710  NVDAELRKLVVSCKDQLSSTEAYKRALEHI-------------HPGN------------T 744

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI----------QAAILDV 802
            + G V E ++  +++  E+   V      H   G    +G+ +          +  IL++
Sbjct: 745  VSGTVFEKSNEDILLKLEDSGLVARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNM 804

Query: 803  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYL 861
             K+ RL+ ++ K           S +QA+++       +DL     V   V+ I+ +   
Sbjct: 805  QKSHRLIKVTNKP----------SLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLF 854

Query: 862  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 921
            V  L      +    V D +  K P   +   Q +  TV ++       R +L LK    
Sbjct: 855  VEFLGGLTGFVPKRLVDDDHVNK-PSFGYALAQPISLTVQSIEDDRQ--RFILTLKEPHT 911

Query: 922  TETSSSKRAKKKSSYD------------------VGSLVQAEITEIKPLELRLKFGIGFH 963
             +   S R K+  + +                   G + +A++  IK  ++ ++      
Sbjct: 912  GKQRVSDRDKESDNANQSSINPIDGDIKSLDDLTFGRITKAKVVSIKETQINVQLAENIQ 971

Query: 964  GRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWE 1012
            GRI ++EV D    + +       FK  Q +  RII    A+S++  P   +S    ++E
Sbjct: 972  GRIDVSEVFDSWEAIKDRKQPLRFFKAKQILPVRIIGIHDARSHRFLPISHRSGKYPVFE 1031

Query: 1013 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1072
            LS KPS L  +++    L     V IG    G+V  + ++   ++IS +++ +L + D +
Sbjct: 1032 LSAKPSSLESTDLD---LLSLDKVKIGSAWIGFVNNIGDDCLWISISPNVRGRLRLTDVS 1088

Query: 1073 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1132
             + S L +    F +G A+  HV  ++ +K  L L  +    G S   + IS+       
Sbjct: 1089 DDLSLLSDITTNFPVGSAIKVHVTGVDTDKNRLDLSAK---HGGSPNKLTISD------F 1139

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
             +G+I+ GR++++      ++VQ+   + G ++  ++                 D  S  
Sbjct: 1140 SKGEILLGRVTRVTEH--QVLVQLSDTVVGAINLIDMA----------------DDYSKI 1181

Query: 1193 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
            +   F K ++L +         +++  +  L  M S+     S  +  P   +  I  + 
Sbjct: 1182 NPADFHKNELLRVC-----VVDIDVPKKKILLSMRSSRVLSSSLPIQDP--EISSISQIK 1234

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
             N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF + +LV GRV+  +
Sbjct: 1235 VNDIVRGFVRRVADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQVNQLVRGRVILAD 1294

Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGL 1371
            P S +++++LK S      ++ I  + +L  G  V G+++ VE +G FI I+ T NL GL
Sbjct: 1295 PESNKLQMSLKQSVLDPNYKTPIT-IKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGL 1353

Query: 1372 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-----DADNLQ 1426
            CH +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+     D +N+Q
Sbjct: 1354 CHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKDSDDESDGENVQ 1413

Query: 1427 MSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVN 1486
              SEE   E+  + G                D+++ES D  S+    +E   +    E +
Sbjct: 1414 DKSEENVSESQYDGG---------------MDLELESGDDISMGGVDLEDTMNGDNSESD 1458

Query: 1487 LDDEQPDM----DNGIS------------QNQGHTDEAKTIDEKNNRHAKKKEKEEREQE 1530
              D    M    D GI+             N   TDE    D  ++     K+K+ R+QE
Sbjct: 1459 SSDWDVQMTGTKDAGITGGLVTSGFDWNGNNTVGTDEDNESDSDSDNKTAVKKKKRRKQE 1518

Query: 1531 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1590
            I+      L+ + P++  ++ERL+   PNSS +W+KYMAF L +++V+KAR IAERAL++
Sbjct: 1519 IQVDRTGDLDTNGPQSVADYERLLLGEPNSSLLWLKYMAFQLELSEVDKAREIAERALRS 1578

Query: 1591 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1650
            I+I ++ EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  L  +Y ++ +
Sbjct: 1579 ISIGQDTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHERLTSIYIQSGK 1636

Query: 1651 NKLADELLYKMI-KKFKHSCKVWLRRVQRLL--KQQQEGVQAVVQRALLSLPRHKHIKFI 1707
            +  ADEL   ++ KKF  S  ++L     L   + + E  +A++ RA+ SLP H H+   
Sbjct: 1637 HDKADELFQAILKKKFTQSPNIYLNFATFLFDTRAEPERGRALLPRAIQSLPTHTHVDIT 1696

Query: 1708 SQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765
            S+   LEF+  NG  +RGR++FEG++S +PKR DLW++ LD EI+ GD++ +R LFER +
Sbjct: 1697 SKFGQLEFRSPNGDIERGRTIFEGLISSFPKRVDLWNVLLDLEIKNGDMEQVRRLFERVL 1756

Query: 1766 SLSLP--------------PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
             L  P               K+ KF FKK+L +E+  G+E+ ++ VK +A +YV +  A
Sbjct: 1757 GLGHPIAADGTKPGAKRLKDKQAKFFFKKWLAFEEKTGDEKMVDEVKARAADYVRAIKA 1815



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 187/755 (24%), Positives = 325/755 (43%), Gaps = 52/755 (6%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--- 57
           + I  G K+ G V+ +N  D+ + LP  L G   L   +  L   ++  + ++++     
Sbjct: 155 KRIVVGSKILGQVSSINAHDIGLSLPNNLTGYIPLTAVSKTLQQKIEKLLNSSQEEDDNS 214

Query: 58  -----------LPTIFHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLE 103
                      L + F +GQ +   V   + +    K  GK+ I LS+       GLS  
Sbjct: 215 DGDDGGDGDLDLKSYFKLGQYLRAAVTSTETEVNHGKVKGKKHIELSVDPREANSGLSKS 274

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAEN-SGIDVKPGLLLQGVVR 160
            +     + A V S+EDHG ++  GL      GF+    +  +   + +K G +   VV 
Sbjct: 275 DLVVNATVQASVLSVEDHGLVMDLGLEDGQTRGFMSSKEIPHDLELLQIKEGTVFLCVVT 334

Query: 161 SIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
             +    VV LS++  T              +I+  +PG      +  +   G+    + 
Sbjct: 335 GHNANGSVVKLSANLPTAGSIKKSHFLASAPTINSFLPGTAAEILLTQVTSTGMAGKIMG 394

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN---------PY 269
                VDI     T    +    Y+   K+  R++   PT+  + L  +         P 
Sbjct: 395 MLDAVVDIVQSGATAGKEDITARYHVGAKIKGRLICTFPTAEPLKLGFSILDHVVKFTPT 454

Query: 270 LLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
           +L +++    V  +  I  + KV +V+ GLG+ +              +SD   + +   
Sbjct: 455 VLDHKSSCEGVPAISAIVPEVKVTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISST 514

Query: 329 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAV 384
           +  Y   S    RI+GF  L+ L    L+    +       DV  G VVKGK+    I  
Sbjct: 515 QGPYMVDSTHEARIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGP 574

Query: 385 DSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 441
           D   G IV    G+  L P  HMS+ ++  P KKF+ G ++  R+L V  + +++ +T K
Sbjct: 575 DGISGLIVSLADGISGLVPGMHMSDTKLQHPEKKFREGVQVSARILSVNLEKRQLRLTLK 634

Query: 442 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           KTL+ S+ +    Y++      + G I  I+ HG  V+FY  V+GF P SE+      +P
Sbjct: 635 KTLLNSESSTWCDYSDILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDP 694

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL--VKLGSLVSGVVDVVTP 557
           +  +++GQVV    ++     R++ +S    +  T   +  L  +  G+ VSG V   + 
Sbjct: 695 AQHFNIGQVVNVHALNVDAELRKLVVSCKDQLSSTEAYKRALEHIHPGNTVSGTVFEKSN 754

Query: 558 NAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL-- 614
             +++ +   G     +  EH++D          + I+ G + ++LL+L+ + S+ L+  
Sbjct: 755 EDILLKLEDSGLV-ARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNMQKSHRLIKV 813

Query: 615 SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 672
           + K SL  + Q  +LP+    +   S V G+V NII  G FV FLG LTGF P+    D 
Sbjct: 814 TNKPSLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLFVEFLGGLTGFVPKRLVDDD 873

Query: 673 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
                S  Y + Q +   +  +  +  R  L+LK+
Sbjct: 874 HVNKPSFGYALAQPISLTVQSIEDDRQRFILTLKE 908



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 22/248 (8%)

Query: 189  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 248
            ++I     G ++  RV  + E+ V++       G +++  + + +   N   D+++++ +
Sbjct: 1134 LTISDFSKGEILLGRVTRVTEHQVLVQLSDTVVGAINLIDMADDYSKIN-PADFHKNELL 1192

Query: 249  NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGL 298
               ++ +D   + + L++    + + + P         S +KV DI  +  V RV D GL
Sbjct: 1193 RVCVVDIDVPKKKILLSMRSSRVLSSSLPIQDPEISSISQIKVNDIV-RGFVRRVADNGL 1251

Query: 299  GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 358
             + L    T     AYV ISD+++  +++ + +++    VR R++            LK 
Sbjct: 1252 FVTLGHDVT-----AYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLKQ 1306

Query: 359  SAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVK 413
            S  +       T  D+K G  V GKV  V+ FGA +   G   +  LC    M+E ++  
Sbjct: 1307 SVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVED 1366

Query: 414  PGKKFKVG 421
              K F+ G
Sbjct: 1367 ARKLFEKG 1374


>gi|425767647|gb|EKV06215.1| RRNA biogenesis protein RRP5, putative [Penicillium digitatum Pd1]
 gi|425769195|gb|EKV07695.1| RRNA biogenesis protein RRP5, putative [Penicillium digitatum PHI26]
          Length = 2158

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 400/1527 (26%), Positives = 744/1527 (48%), Gaps = 189/1527 (12%)

Query: 373  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--- 429
            PG   +  +  V S G I +  G + A   L   S    +   KK+K+GA++  R++   
Sbjct: 372  PGTAAEILLTEVTSNGMIGKIMGMLDATVDLVQSSINGKIDLEKKYKIGAKIKGRIISTF 431

Query: 430  -GVKSKRITVTHKKTLVK----SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
               +  +++ +    ++K    ++    S  A A   +I    + K++ HG  V    G 
Sbjct: 432  PAAEPLKVSFSMLDHILKLSSDARGPGSSDDAPAISAIIPEVKVVKVD-HGLGVYARIGE 490

Query: 485  ---QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF----MMKPT 534
                GF   S L    ++   E S  + +  V + R++          LSF    + +P 
Sbjct: 491  TKHMGFVHMSRLSDGKVETIDESSGAFQLDAVHEARVIGYNSIDNLYILSFEKSVIEQPF 550

Query: 535  RVSEDDLVKLGSLVSGVVDVVTPNA----VVVYVIAKGYSKGTIPTEHLADHLEHATVMK 590
               ED  V +G++V G V+ +   A     ++  +A G + G +P+ H AD +      K
Sbjct: 551  LRVED--VNVGAIVKGKVEKLLIGADGMNGLIVNLADGIT-GLVPSMHFADTMLQFPEKK 607

Query: 591  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 649
               + G +   ++L ++ E   + L+ K SL+NS   +  D   I P++   G + N+  
Sbjct: 608  --FREGQKLSLRILSVNLEKRQIRLTLKKSLLNSESTIWKDYKDITPSAQSPGTIVNLQS 665

Query: 650  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
             G  V+F G + GF P S+  +    D ++ + +GQ V  + L V++  GR+ +S K   
Sbjct: 666  HGAVVQFYGEVRGFLPVSEMSEAYIQDPAQHFRLGQVVNVHALSVDASLGRLAVSCKDP- 724

Query: 710  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
              ST     +E F                      E    G ++ G V E ++  V++  
Sbjct: 725  --STFTEKYREAF----------------------ENLHPGHLVTGVVFEKSNDDVLLKL 760

Query: 770  EEHSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFID 819
            +E   V      H + G   +  S++             +L++ +A RL+ +S +     
Sbjct: 761  DESGLVARLDAAHLIDGPPSKQNSMLSKLRVGQKLNDLLVLNIQRAHRLIKVSSRASLKK 820

Query: 820  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 879
              ++ N   Q ++ +   E S   G       I  I  +   V  L      +    + D
Sbjct: 821  AAKQKNIPGQFEEVQ---EGSLVTGF------IRNITPDGVFVEFLGGLTGLLPKRLIED 871

Query: 880  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK------ 933
             N ++ P       Q+++  V ++       R +L +K +  T+ +  K AK+       
Sbjct: 872  ANLEQ-PHYGLSKAQTIVVNVQSV--DQDLKRFILSMKPVQATQAAPKKVAKQTDETVVN 928

Query: 934  ---------SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NL 982
                     S +  G +V+ ++  IK  ++ ++      GRI ++E+ DD  ++ +    
Sbjct: 929  PIDDSIESMSDFTFGRIVECKVVSIKATQINVQLADNVQGRIDVSEIFDDWKDIKDRKQP 988

Query: 983  FSNFKIGQTVTARII-----AKSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFE 1032
               FK  QT++ARI+     A+++K         K  ++ELS+KPS +  +   + L  E
Sbjct: 989  LRFFKAKQTLSARILLGVHDARNHKFLPISHRTGKYPVFELSLKPSYVKATN-PAPLNME 1047

Query: 1033 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1092
            +  V +G    G+V  V ++   + +S +++ +L  +D++ + S L E ++ F IG A+ 
Sbjct: 1048 Q--VQVGSSWVGFVNNVADDCLWVNLSPNVRGRLRFMDASDDLSLLTEIEKNFPIGSALK 1105

Query: 1093 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1152
              V ++N EK  L L  +   D ++   + +           G ++ GRI+K+      L
Sbjct: 1106 VQVTAVNTEKGHLNLSAKQGYDKLTFGDISV-----------GMVLPGRITKVTER--QL 1152

Query: 1153 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1212
            ++Q+G  L G V+ T++ +          D  + +P + +++ + ++  V+ + ++ +  
Sbjct: 1153 IMQLGESLVGAVNLTDIAD----------DYSKANP-TVHNKNEVLRACVIAVDKSNK-- 1199

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
              + LSLR S           +S+ +    + +  ++D+  N I++G+V+ VT  G F+ 
Sbjct: 1200 -KIALSLRPS---------KVMSSSLPVQDREISSLKDVKLNDIIRGFVRRVTDSGLFVA 1249

Query: 1273 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1332
            +S  + A V +S+LSD Y++  +  F   +LV G+V  V+    +++++LK S      +
Sbjct: 1250 VSNDITAYVRVSDLSDSYLKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFK 1309

Query: 1333 SEINNLSNLHVGDIVIGQIKRVESYGLFITIE-NTNLVGLCHVSELSEDHVDNIETIYRA 1391
            + I  L +L VG IV G++++VE +G FI I+ ++N+ GLCH SE++E  V++   +Y  
Sbjct: 1310 APIA-LKDLKVGQIVTGKVRKVEEFGAFIVIDGSSNISGLCHRSEMAEKRVEDARKLYDE 1368

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE--EVGSYNRSSLL 1449
            G+ VK K++K+D E ++IS  +K+S+F+++ +      +  S + +   E+G  +     
Sbjct: 1369 GDAVKAKVIKIDLESKKISFSLKASHFQDEEEMDSEDEDSMSIDGLGGVELGEDDSEDKD 1428

Query: 1450 ENSS-VAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEA 1508
            ++   +   D++  SED  S     ++    VP        ++P  + G+  +       
Sbjct: 1429 DDDESMGGVDVEDSSEDDES-----VDGDEDVPM-------QKPSKNGGLGSSGFDWSGT 1476

Query: 1509 KTID-----EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFV 1563
              ID     + ++  + KK+K+ R+ EI+      L+ + P++  +FERL+   P+SS +
Sbjct: 1477 AQIDAAARSDSDDEGSNKKKKKSRKAEIQVDRTGDLDANGPQSVADFERLLLGEPDSSLL 1536

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L + + EKAR+IAERAL+TI + ++ EKLNIWVA  N+EN YG+  ++++ +
Sbjct: 1537 WLQYMAFQLELGETEKARAIAERALRTITMGQDAEKLNIWVALLNMENTYGD--DDSLEE 1594

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLK 1681
            VF+RA QY DP++++  ++ +Y ++ +N+ A +L Y  +KK     S K +      L  
Sbjct: 1595 VFKRACQYNDPQEIYERMISIYIQSGKNQKASDLFYDALKKKVSSQSPKFFYNYASFLFD 1654

Query: 1682 QQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKR 1737
                 +  +A++ RAL SLP H H++  S+ A LEF+  NG  +RGR++FEG+LS +PKR
Sbjct: 1655 TMASPDRARALLPRALQSLPAHTHVETTSKFAQLEFRSANGDVERGRTIFEGLLSSFPKR 1714

Query: 1738 TDLWSIYLDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLE 1783
             DLW++ LD EI++GD + +R LFER + L               L PK+ +FLFKK+L 
Sbjct: 1715 IDLWNVLLDLEIKVGDAEQVRRLFERVLGLQGGKKGPVSVDASKKLKPKQARFLFKKWLS 1774

Query: 1784 YEKSV---GEEERIEYVKQKAMEYVES 1807
            +E+ +   G+E+ +E VK +A+ YV+S
Sbjct: 1775 FEEGLATDGDEKMVEEVKARAVTYVKS 1801



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 195/762 (25%), Positives = 338/762 (44%), Gaps = 71/762 (9%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--- 57
           + I  G  + G V+ +N  D+ + LP  L G   L   +  L+  L+  +    ++    
Sbjct: 157 KRIVPGAMILGQVSSINAHDIGLSLPNNLTGYVPLTSVSKGLEDRLEKMLNDEGEDDDAE 216

Query: 58  ---------LPTIFHVGQLVSCIVLQLD---DDKKEIGKRKIWLSLRLSLLYKGLSLETV 105
                    L   F++GQ +   V+      DD K   K++I LS+       G S   +
Sbjct: 217 DSSDDESFDLKDHFYLGQYLRAFVVSTGSNPDDPKAKSKKRIELSVDPRQTNTGFSKSDL 276

Query: 106 QEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSI 162
                + A V S+EDHG ++  G+      GF+       N     +K G +   +V   
Sbjct: 277 VVNSAVQASVVSVEDHGVVMDLGIEGSELKGFMSSKETDPNVDYSSIKEGSVFLCMVTGQ 336

Query: 163 DRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
           + +  V+ LSS+  T +     +      +I+  +PG      +  +  NG++   +   
Sbjct: 337 NASGNVIKLSSNFQTSASIKKSNYLSSAPTINTFLPGTAAEILLTEVTSNGMIGKIMGML 396

Query: 221 TGTVDIFHLQNTFPTTNWKND----YNQHKKVNARILFVDPTSRA--VGLTLNPYLLH-- 272
             TVD+        + N K D    Y    K+  RI+   P +    V  ++  ++L   
Sbjct: 397 DATVDLVQ-----SSINGKIDLEKKYKIGAKIKGRIISTFPAAEPLKVSFSMLDHILKLS 451

Query: 273 --NRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
              R P S      +  I  + KVV+VD GLG+   I  T      +V +S +++ +V  
Sbjct: 452 SDARGPGSSDDAPAISAIIPEVKVVKVDHGLGVYARIGET--KHMGFVHMSRLSDGKVET 509

Query: 328 LEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--- 381
           +++    ++  +    R++G+  ++ L     + S  E       DV  G +VKGKV   
Sbjct: 510 IDESSGAFQLDAVHEARVIGYNSIDNLYILSFEKSVIEQPFLRVEDVNVGAIVKGKVEKL 569

Query: 382 -IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRIT 437
            I  D   G IV    G+  L P  H ++  +  P KKF+ G +L  R+L V  + ++I 
Sbjct: 570 LIGADGMNGLIVNLADGITGLVPSMHFADTMLQFPEKKFREGQKLSLRILSVNLEKRQIR 629

Query: 438 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 497
           +T KK+L+ S+  I   Y + T    + G I  ++ HG  V+FY  V+GF P SE+    
Sbjct: 630 LTLKKSLLNSESTIWKDYKDITPSAQSPGTIVNLQSHGAVVQFYGEVRGFLPVSEMSEAY 689

Query: 498 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVV 552
             +P+  + +GQVV    +S   +  R+ +S    P+  +E      + +  G LV+GVV
Sbjct: 690 IQDPAQHFRLGQVVNVHALSVDASLGRLAVS-CKDPSTFTEKYREAFENLHPGHLVTGVV 748

Query: 553 DVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESSN 611
              + + V++ +   G     +   HL D        M S ++ G + + LLVL+ + ++
Sbjct: 749 FEKSNDDVLLKLDESGLV-ARLDAAHLIDGPPSKQNSMLSKLRVGQKLNDLLVLNIQRAH 807

Query: 612 LLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 667
            L+  S++ SL  +A+Q  +P     +   S+V G++ NI   G FV FLG LTG  P+ 
Sbjct: 808 RLIKVSSRASLKKAAKQKNIPGQFEEVQEGSLVTGFIRNITPDGVFVEFLGGLTGLLPKR 867

Query: 668 KAVDGQRADLSKTYY---VGQSVRSNILDVNSETGRITLSLK 706
              D   A+L + +Y     Q++  N+  V+ +  R  LS+K
Sbjct: 868 LIED---ANLEQPHYGLSKAQTIVVNVQSVDQDLKRFILSMK 906



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 163/376 (43%), Gaps = 43/376 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIF 62
            + +  G    G V  V +  L + L   +RG  R  DA D + L  EIE N        F
Sbjct: 1047 EQVQVGSSWVGFVNNVADDCLWVNLSPNVRGRLRFMDASDDLSLLTEIEKN--------F 1098

Query: 63   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
             +G  +   V  ++ +K         L+L     Y  L+   +  GMVL   +  + +  
Sbjct: 1099 PIGSALKVQVTAVNTEKGH-------LNLSAKQGYDKLTFGDISVGMVLPGRITKVTERQ 1151

Query: 123  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDT 177
             I+  G  S  G +   ++A++      P +     +L+  V ++D++ K + LS  P  
Sbjct: 1152 LIMQLG-ESLVGAVNLTDIADDYS-KANPTVHNKNEVLRACVIAVDKSNKKIALSLRPSK 1209

Query: 178  V--SKCVTKD-----LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
            V  S    +D     LK + ++ ++ G      V+ + ++G+ ++     T  V +  L 
Sbjct: 1210 VMSSSLPVQDREISSLKDVKLNDIIRGF-----VRRVTDSGLFVAVSNDITAYVRVSDLS 1264

Query: 231  NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIY 286
            +++    WK+ +   + V  ++ FVD     + L+L   +L  + +AP +   +KVG I 
Sbjct: 1265 DSY-LKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPIALKDLKVGQIV 1323

Query: 287  DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 346
               KV +V+     ++   S+ +S   +   S++AE+ V    K Y EG  V+ +++   
Sbjct: 1324 -TGKVRKVEEFGAFIVIDGSSNISGLCHR--SEMAEKRVEDARKLYDEGDAVKAKVIKID 1380

Query: 347  HLEGLATGILKASAFE 362
                  +  LKAS F+
Sbjct: 1381 LESKKISFSLKASHFQ 1396


>gi|19075390|ref|NP_587890.1| U3 snoRNP-associated protein Rrp5 (predicted) [Schizosaccharomyces
            pombe 972h-]
 gi|74582568|sp|O74835.1|RRP5_SCHPO RecName: Full=rRNA biogenesis protein rrp5; AltName: Full=Ribosomal
            RNA-processing protein 5; AltName: Full=U3 small
            nucleolar RNA-associated protein rrp5; Short=U3
            snoRNA-associated protein rrp5
 gi|3650378|emb|CAA21087.1| U3 snoRNP-associated protein Rrp5 (predicted) [Schizosaccharomyces
            pombe]
          Length = 1690

 Score =  439 bits (1128), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 390/1393 (27%), Positives = 655/1393 (47%), Gaps = 198/1393 (14%)

Query: 484  VQGFAPRSEL------GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-----K 532
            + GFA  S L      G+ P   P   Y V    + RI++         LSF       +
Sbjct: 424  ISGFAHISRLSDKKVAGISPNSGP---YKVDSTHEARIINYSYVDNLYILSFQQSVLNQQ 480

Query: 533  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATV 588
              R+ +   +++G  V G +  + P  +VV  I++G + G +P+ H+AD      E    
Sbjct: 481  FLRIED---IEVGQFVDGTIAKLIPQGIVV-TISEGIN-GLVPSTHMADIALQFPERRFK 535

Query: 589  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 648
            + S +K      ++L  +     +LL+ K SL+N+   L  D     P +   G +  I 
Sbjct: 536  VGSSVKC-----RVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIF 590

Query: 649  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            E G  V F   +  F P S+  +    D  + + VGQ++   I+  + E  ++ +  ++ 
Sbjct: 591  EDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQ 650

Query: 709  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 768
               S DA                         L+  E    GSV+ G V +  +  V+V 
Sbjct: 651  ---SWDAK-----------------------RLERFENIKAGSVLSGIVLQKTEDSVIVD 684

Query: 769  FEEHSDVYGFITHHQLAGATVESGSVI-----------QAAILDVAKAERLVDLSLKTVF 817
              +   V G IT  QL    +   S +           +  +L    +++L+ LSLK   
Sbjct: 685  LGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSL 742

Query: 818  IDRFREANSNRQAQKKKRKREASKDLGV---HQTVNAIVEIVKENYLVLSLPEYNHSIGY 874
            ++  +E   NR        +E  K  G      T    VE    + LV  +P+   S  Y
Sbjct: 743  VEAAKE---NRMPINITDLKEGIKYFGFVRNATTFGVFVEFC--DGLVALVPKAYISEEY 797

Query: 875  ASVSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSSTAGRLLLLLKAISET 922
              V        P   +   QSV    +++            P +    + +  +++  + 
Sbjct: 798  VPV--------PSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDI 849

Query: 923  ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 980
            +    +  KK   Y  G +  A +T  K  +L +      HGR+ ++EV D+   +V+  
Sbjct: 850  DNPVDETIKKTYDYVAGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPN 909

Query: 981  NLFSNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLL 1030
                 F  G  +  R++   +  + K          K FL ELS++PS+L +     K  
Sbjct: 910  KPLKRFHKGDKIRVRVLGIHDSRNHKFLPISHRVSPKQFL-ELSVRPSILNMEPFSMK-- 966

Query: 1031 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1090
              E     G  VTG+V  V  E   ++++  +  ++ ILD   +  EL   Q+ F +GKA
Sbjct: 967  --EPQFKKGDEVTGFVNNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKA 1024

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
            +  +V  +N E  +    + P Q G  + T              G  + G+++ +     
Sbjct: 1025 IKCYV--VNAEDSITLSAIGPLQ-GFENLT-------------PGSRLVGKVTNV--NEA 1066

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
            G ++Q+  H+ GRV   ++           +D+    P + +     V   VL +    R
Sbjct: 1067 GAILQLPGHMSGRVSRIDM-----------FDDYDILPETKFTRNNLVGVCVLSVDVPNR 1115

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
                           +S+ NS   S  V+   K +  ++DL    I +G+V NV ++G F
Sbjct: 1116 KV------------ALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQGLF 1163

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            + +   L A+V +  L D +++  +  F + +LV G ++ ++  SKR+E++LK S  +  
Sbjct: 1164 VTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQS--KIK 1221

Query: 1331 SQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETI 1388
              SEI    +++ VG  + G + +V  YG+ I I+ T N+VGLCH SE+++  V NI  +
Sbjct: 1222 DSSEITKTFADIAVGSNLDGTVVKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKL 1281

Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKSSYFKN--------DADNLQMSSEEESDEAIEEV 1440
            Y +G+KV+  +L VD EKRRI+LG+KSSYF +        + ++++M SE++SD +  EV
Sbjct: 1282 YSSGDKVRAHVLDVDSEKRRIALGLKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEV 1341

Query: 1441 GSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD--MDNGI 1498
            GS +               D++SE+  +L  A  E            ++E+P     NG 
Sbjct: 1342 GSKD---------------DVQSEEVENLESAGDED-----------EEEEPSALQANGF 1375

Query: 1499 SQNQGHT--DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS 1556
                G T  D+     E +     ++ K ++ +  R  +E     + P T  +FER + S
Sbjct: 1376 DWTDGSTVFDKLADDTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEIPSTAADFERQLLS 1435

Query: 1557 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1616
            SPNSS +WI YMA+ L++ ++++AR + +RAL TIN REE+EKLN+W+A  NLE  YG  
Sbjct: 1436 SPNSSLLWISYMAYHLNLNELQEAREVGKRALSTINYREEDEKLNVWMALLNLEVAYGT- 1494

Query: 1617 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRV 1676
             E+++ +VF+ A  YCD   V+  L G+  +  +  LADE +  M+K FK    VW++  
Sbjct: 1495 -EDSLKEVFKEACAYCDALIVYEKLCGILIKGGKVDLADEYMQLMLKNFKQVPSVWIQYA 1553

Query: 1677 QRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1735
              LL   + E    +++R+L SLP+ +H+  I + AILEFKNG  +RGR++FEG+LS YP
Sbjct: 1554 TFLLNNDKAEKAHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPERGRTIFEGLLSSYP 1613

Query: 1736 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1795
            KR DLW++ +D E++  D  ++R LF+R ++L+L  KK KF FKK+L YEK++G++E  E
Sbjct: 1614 KRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKWLAYEKNIGDDEGAE 1673

Query: 1796 YVKQKAMEYVEST 1808
             VK++A+EYV  +
Sbjct: 1674 QVKRRAIEYVSES 1686



 Score =  216 bits (550), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 315/1291 (24%), Positives = 549/1291 (42%), Gaps = 157/1291 (12%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDNEIEAN--- 53
            +NI+ G  + G +A++N  DL + LP  L G         + +D LD I DN  E N   
Sbjct: 104  KNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSI-DNHAEDNAAT 162

Query: 54   --EDNL-----LPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIWLSLRLSLLYKGLSLETV 105
              ED L     L  ++ VGQ V   V  L  ++  + GKR I LSL+      G + E  
Sbjct: 163  EEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDA-NGSAPEAA 221

Query: 106  Q--EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSID 163
                G ++ A V SIEDHG +   G+ ++TGFL + ++  N    V+   LL  V+   D
Sbjct: 222  DFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKKHI--NDFPFVEGQSLLCSVISKED 279

Query: 164  RTRKVVYLSSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 222
            R   + +LS     ++   TK L+ + S+  ++PG  ++  V  I E+GV+  ++     
Sbjct: 280  R---IFHLS-----LTATSTKALEVMPSVQAILPGDYINVLVTDIKESGVIAKYMGVVDV 331

Query: 223  TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVG-----LTLNPYLLHNR 274
            T DI+H  +     + ++ +   K V AR+LFV   DP   AV      LT N +   N 
Sbjct: 332  TSDIYH-SSPVKGEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSFLPHVLTFN-FATPNT 389

Query: 275  APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYK 333
              P  + +G I + +KV  V   LG+  D+    +S  A+++ +SD     +      YK
Sbjct: 390  PHPDQLDIGFIVNAAKVTYVSSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPNSGPYK 449

Query: 334  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 393
              S    RI+ + +++ L     + S          D++ G  V G +  +   G +V  
Sbjct: 450  VDSTHEARIINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVDGTIAKLIPQGIVVTI 509

Query: 394  PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAI 451
              G+  L P  HM++  +  P ++FKVG+ +  RVL   V  KR+ +T KK+L+ + L +
Sbjct: 510  SEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNTDLPL 569

Query: 452  LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
            +  Y +AT    T G + +I + G  V FYN V+ F P SE+      +    + VGQ +
Sbjct: 570  IYDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTL 629

Query: 512  KCRIMSSIPASRRINLSFMMK---PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 568
               I+S  P +R++ +    +     R+   + +K GS++SG+V   T ++V+V +  K 
Sbjct: 630  SVTIVSCDPENRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDK- 688

Query: 569  YSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQ 625
               G I    L D  L   + + + ++   +  ++LVL  ++S  L  LS K SL+ +A+
Sbjct: 689  -VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAK 747

Query: 626  Q--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 683
            +  +P + + +       G+V N    G FV F   L    P++   +      S  Y  
Sbjct: 748  ENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKAYISEEYVPVPSAVYKP 807

Query: 684  GQSVRSNILDVNSETGRITLSLKQSCCSSTDA-SFMQEHFLLEEKIAMLQSSKHNGSELK 742
             QSV    L V     +  +S K        A  FM+  + ++  +       ++     
Sbjct: 808  QQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPVDETIKKTYD----- 862

Query: 743  WVEGFIIGSVI-EGKVHESN-DFGV----VVSFEEHSDVYGFITHHQLAGATVESGSVIQ 796
            +V G I  +V+   K  + N D        V   E  D +G I            G  I+
Sbjct: 863  YVAGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPNKPLKRFHKGDKIR 922

Query: 797  AAILDV--------------AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 842
              +L +                 ++ ++LS++   ++   E  S ++ Q KK        
Sbjct: 923  VRVLGIHDSRNHKFLPISHRVSPKQFLELSVRPSILN--MEPFSMKEPQFKKG------- 973

Query: 843  LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASV-SDYNTQKFPQKQFLNGQSVIATVM 901
                +    +  + KE   V   P  N  I    + +D       QK F  G+++   V+
Sbjct: 974  ---DEVTGFVNNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKAIKCYVV 1030

Query: 902  ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIG 961
                S T       L AI   +   +           GS +  ++T +      L+    
Sbjct: 1031 NAEDSIT-------LSAIGPLQGFENLTP--------GSRLVGKVTNVNEAGAILQLPGH 1075

Query: 962  FHGRIHITEVNDDKSNVVENLFS-NFKIGQTVTA-----RIIAKSNKPDMKKSFLWELSI 1015
              GR+   ++ DD   + E  F+ N  +G  V +     R +A S +    +S       
Sbjct: 1076 MSGRVSRIDMFDDYDILPETKFTRNNLVGVCVLSVDVPNRKVALSARNSRTQS------- 1128

Query: 1016 KPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP 1075
            +P  +   EI S    +  D+  G     +V  V N+   +TI  +L A++ I       
Sbjct: 1129 QPVEIKDKEINSVDDLKIGDICRG-----FVCNVANQGLFVTIGHNLIARVKI--GELFD 1181

Query: 1076 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IH 1133
            + +++++  FH+ + V G ++ I+ + K + + L+  Q  I D     S++  +TF  I 
Sbjct: 1182 TFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLK--QSKIKD-----SSEITKTFADIA 1234

Query: 1134 EGDIVGGRISKILSGVGGLVVQIG--PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
             G  + G + K+  G  G++++I    ++ G  H +E+ +  V            +    
Sbjct: 1235 VGSNLDGTVVKV--GDYGVLIRIDGTDNIVGLCHKSEIADAVV-----------LNISKL 1281

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1222
            Y  G  V+  VL++    R    + L L+SS
Sbjct: 1282 YSSGDKVRAHVLDVDSEKR---RIALGLKSS 1309



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 194/908 (21%), Positives = 347/908 (38%), Gaps = 174/908 (19%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            ++I  G  + G +A++  + +V+ +  G+ GL  +    D  L               F 
Sbjct: 485  EDIEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTHMADIAL---------QFPERRFK 535

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSL----ETVQEGMVLTAYVKSIE 119
            VG  V C VL  +     + ++++ L+L+ SLL   L L    E    G      +  I 
Sbjct: 536  VGSSVKCRVLSTN-----VLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIF 590

Query: 120  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 179
            + G I+ F   S   FLP + ++E    D +           + +T  V  +S DP+   
Sbjct: 591  EDGAIVEF-YNSVRAFLPVSEMSEAYIRDAREHF-------KVGQTLSVTIVSCDPENRK 642

Query: 180  KCV-----TKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
              V     + D K +   + +  G ++S  V    E+ V++      TG + +  L +  
Sbjct: 643  MRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDKVTGVITLGQLCD-- 700

Query: 234  PTTNWKNDYNQHKKVNAR-----------ILFVDPTSRAVGLTLNPYLLH----NRAPPS 278
                   D N+  KV  +           +L  D + + + L+L   L+     NR P  
Sbjct: 701  ------GDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRMP-- 752

Query: 279  HVKVGDIYDQSK---VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 335
             + + D+ +  K    VR     G+ ++     V   A V  + ++EE V      YK  
Sbjct: 753  -INITDLKEGIKYFGFVRNATTFGVFVEFCDGLV---ALVPKAYISEEYVPVPSAVYKPQ 808

Query: 336  SCVRVRIL--------GFRHLEGLATGILKASAF------------EGLVFTHSDVKPGM 375
              V    L         F   + LA    KA  F            E +  T+ D   G 
Sbjct: 809  QSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPVDETIKKTY-DYVAGK 867

Query: 376  VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF--EIV---KPGKKFKVGAELVFRVLG 430
            +    V +  +    V     V     +  + +   EIV   KP K+F  G ++  RVLG
Sbjct: 868  ITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPNKPLKRFHKGDKIRVRVLG 927

Query: 431  VKSKR----ITVTHK-------KTLVKSKLAILSSYAEATDRLI----THGWITKIEKHG 475
            +   R    + ++H+       +  V+  +  +  ++    +        G++  + K  
Sbjct: 928  IHDSRNHKFLPISHRVSPKQFLELSVRPSILNMEPFSMKEPQFKKGDEVTGFVNNVSKEC 987

Query: 476  CFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSFMMK 532
             +V     V G  P  +L  D   E +S+   + +G+ +KC +++   A   I LS  + 
Sbjct: 988  VWVSLTPSVNGRIPILDLTTDVK-ELNSLQKHFFLGKAIKCYVVN---AEDSITLS-AIG 1042

Query: 533  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 592
            P +  E +L     LV  V +V    A++      G+  G +    + D  +        
Sbjct: 1043 PLQGFE-NLTPGSRLVGKVTNVNEAGAILQL---PGHMSGRVSRIDMFDDYD-------- 1090

Query: 593  IKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV------ 639
            I P  +F +       +L +D  +  + LSA+ S     Q  P +      NSV      
Sbjct: 1091 ILPETKFTRNNLVGVCVLSVDVPNRKVALSARNS---RTQSQPVEIKDKEINSVDDLKIG 1147

Query: 640  --VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
                G+VCN+   G FV     L       +  D    D    ++V Q V+ +I+ ++++
Sbjct: 1148 DICRGFVCNVANQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDND 1207

Query: 698  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
            + RI +SLKQS     D+S + + F                          +GS ++G V
Sbjct: 1208 SKRIEMSLKQSKIK--DSSEITKTF----------------------ADIAVGSNLDGTV 1243

Query: 758  HESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVD 810
             +  D+GV++  +   ++ G     ++A A V        SG  ++A +LDV   +R + 
Sbjct: 1244 VKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIA 1303

Query: 811  LSLKTVFI 818
            L LK+ + 
Sbjct: 1304 LGLKSSYF 1311


>gi|119482079|ref|XP_001261068.1| rRNA biogenesis protein RRP5, putative [Neosartorya fischeri NRRL
            181]
 gi|119409222|gb|EAW19171.1| rRNA biogenesis protein RRP5, putative [Neosartorya fischeri NRRL
            181]
          Length = 1819

 Score =  434 bits (1117), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 378/1350 (28%), Positives = 661/1350 (48%), Gaps = 172/1350 (12%)

Query: 542  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGAVVKGKIEKLLIGPAGVDGLIVTLADGIT-GLVPSMHFADTALQFPEKK--FREGL 610

Query: 598  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
                ++L ++ +   + L+ K SL+NS   +  D   I P S   G + NI   G  V+F
Sbjct: 611  TITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQF 670

Query: 657  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVSCKDP------ST 724

Query: 717  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII-GSVIEGKVHES----NDFGVVVSFEE 771
            F + +    EKI                 G ++ G+V E  V +     ++FG++   + 
Sbjct: 725  FTETYKKAFEKIQ---------------PGLLVTGTVFEKSVDDVLLKLDEFGLIARLDL 769

Query: 772  HSDVYGFITHHQLAGATVESGSVIQAA-ILDVAKAERLVDLSLKTVFIDRFREANSNRQA 830
               V G  +    A + +  G  +    +LD+ +A RL+ +S +           S ++A
Sbjct: 770  AHVVDGSESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKA 819

Query: 831  QKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 889
             K+       +D+     V   V  I  +   +  L      +    ++D N  K P   
Sbjct: 820  AKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEFLGGITGLVPKRLLADENASK-PDYG 878

Query: 890  FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK---------------- 933
             +  Q V ATV ++ +     R +L +K  SE  ++  KR   K                
Sbjct: 879  MVKSQLVTATVHSIDTDFQ--RFILSMKP-SEATSAGPKRPAPKPTLSNDVVSNAVDESI 935

Query: 934  ---SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKI 988
               S +  G  V+ ++  +K  ++ ++      GRI ++EV D   ++ +       F+ 
Sbjct: 936  ESMSDFTFGRTVKCKVVSVKATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFRP 995

Query: 989  GQTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIG 1039
             Q ++ARI+    A+S+K  P   +S    ++ELS+KPS L  +   S L  E+  V IG
Sbjct: 996  KQIISARILGIHDARSHKFLPISHRSGKLPVFELSVKPSFLQAAN-PSPLNLEQ--VQIG 1052

Query: 1040 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1099
                G++  V ++   + +S +++ +L  +D++ + S   + ++ F IG A+  HV +++
Sbjct: 1053 STWVGFINNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAAVD 1112

Query: 1100 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1159
             EK  L L  +     +S + + +           G I+ GR++K+      +++Q+   
Sbjct: 1113 TEKGRLDLTAKQGSSKLSFEDISV-----------GMILPGRVTKVTEK--QVIMQLSDT 1159

Query: 1160 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1219
            + G V+  +L +          D  + +P + Y +   ++  V+ + +  +    + LSL
Sbjct: 1160 VVGAVNLIDLAD----------DYSKANP-TVYHKNDVLRACVVGVDKANK---KISLSL 1205

Query: 1220 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1279
            R S           LS+ +      +  ++ L  N +V+G+VK V   G F+ L   + A
Sbjct: 1206 RPS---------KVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTA 1256

Query: 1280 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1339
             V +S+LSD Y++  +  F + +LV GRV  V+P   R++++LK S      ++ I  + 
Sbjct: 1257 YVRVSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPIT-MH 1315

Query: 1340 NLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1398
            +L VG +V G++++VE +G FI I+ + N+ GLCH SE+++  VD+  T+Y  G+ VK K
Sbjct: 1316 DLKVGQVVTGKVRKVEEFGAFIVIDRSANVSGLCHRSEMADKRVDDARTLYEEGDVVKAK 1375

Query: 1399 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQD 1458
            I+KVD+E  +IS  +K+S+FK+         +EE +   +E G  N  SL     V V+ 
Sbjct: 1376 IIKVDRESGKISFSLKASHFKD--------HDEEDESGSDEDGDSNGVSLDGMGGVDVEG 1427

Query: 1459 MDMESED------GGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN--------QGH 1504
             D    D      GG  +    ES       +V +       D G+           +  
Sbjct: 1428 SDDSENDDDDVSMGGVDLEEDSESDGEESDEDVEMTSAPVKRDGGLGATGFDWSGNVKDD 1487

Query: 1505 TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1564
             DEA   D  +  +++KK+K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W
Sbjct: 1488 EDEAMQSDSDDEDNSRKKKKKSRKPEIQVDRTGELDANGPQSVADYERLLLGEPDSSLLW 1547

Query: 1565 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1624
            +KYMAF L + +VEKA+ IAERAL+TI+I ++ EKLNIWVA  NLEN YGN  ++++ +V
Sbjct: 1548 LKYMAFQLELGEVEKAKEIAERALRTISIGQDTEKLNIWVALLNLENTYGN--DDSLDEV 1605

Query: 1625 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQ 1683
            F+RA QY D ++++  +  +Y ++ +N  ADEL    + KK  ++ K +L     L    
Sbjct: 1606 FKRACQYNDTQEIYDRMTSIYIQSGKNDKADELFQTALKKKISNTPKFFLNYASFLFDSM 1665

Query: 1684 Q--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTD 1739
               +  +A++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR D
Sbjct: 1666 AAPDRARALLPRALQSLPSHTHVELTSKFGQLEFRSPNGDVERGRTVFEGLLSSFPKRVD 1725

Query: 1740 LWSIYLDQEIRLGDVDLIRGLFERAISL-----------------SLPPKKMKFLFKKYL 1782
            LW++ LD EI+ GD + +R LFER + +                  L PK+ KF FKK+L
Sbjct: 1726 LWNVLLDLEIKNGDAEQVRRLFERVLGIRDAKKGAAAAAPMDASKKLRPKQAKFFFKKWL 1785

Query: 1783 EYEKSV-----GEEERIEYVKQKAMEYVES 1807
             +E+ +     G+E+ +E +K KA +YV+S
Sbjct: 1786 SFEEKLAAANGGDEKMVEEIKAKAADYVKS 1815



 Score =  176 bits (447), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 191/767 (24%), Positives = 331/767 (43%), Gaps = 64/767 (8%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN-EDNLLPTI- 61
           + I  G  + G V+ +N  D+ + LP  L G      A+   L+ +IE    DN      
Sbjct: 152 KRIVPGSMVLGQVSSINAHDIGLSLPNNLTGYVPLT-AVSKKLEEKIEKILNDNDNEDSD 210

Query: 62  ----------------FHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSL 102
                           F++GQ +   V+ +     D     K++I LS+       GLS 
Sbjct: 211 AEEEDDDEDSLDLTDYFYLGQYLRASVVSVGSNAADAPSKNKKRIELSVDPRQTNAGLSK 270

Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVV 159
             ++    + A V S+EDHG ++  G+      GF+ +  +   +    +K G +   +V
Sbjct: 271 SDLEVNTAIQASVVSVEDHGLVMDLGIEGADVKGFMSKKEIDPKTDYSSIKEGSVFLCMV 330

Query: 160 RSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
              +    VV LS++  +              +I+  +PG      +  +  +G++   +
Sbjct: 331 TGQNANGSVVKLSANLQSAGSIKKSHYLSTASTINSFLPGTAAEILLTEVSSSGLIGKIM 390

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL---- 271
                TVD+          +    +    K+  RI+   P S    VG ++  ++L    
Sbjct: 391 GMLDATVDLVQSGGNSGKDDLTKKFQLGAKIKGRIVCTFPASEPFKVGFSILDHVLKFAT 450

Query: 272 HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
               P +      +  I  ++KVV VD G+G+ + + ST      +V +S +A+ +V  +
Sbjct: 451 EGHGPGTSEDAPAISAIIPEAKVVMVDPGMGVYVQMGST--KHMGFVHVSRLADGKVEHI 508

Query: 329 EKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV---- 381
             +   ++  S    R++G+   +GL     +    E       DV  G VVKGK+    
Sbjct: 509 APEHGPFRIDSVHEARVVGYSSFDGLYLLSFERKVIEQPFLRLEDVTVGAVVKGKIEKLL 568

Query: 382 ---IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 436
                VD  G IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I
Sbjct: 569 IGPAGVD--GLIVTLADGITGLVPSMHFADTALQFPEKKFREGLTITARILSVNLQKRQI 626

Query: 437 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 496
            +T KK+L+ S+ AI   Y +      + G I  I+ HG  V+FY  V+GF P SE+   
Sbjct: 627 RLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEMSEA 686

Query: 497 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGV 551
              +PS  +  GQVV    +S  PA  ++ +S    P+  +E      + ++ G LV+G 
Sbjct: 687 YIKDPSQHFRQGQVVNVHALSVDPALGKLAVS-CKDPSTFTETYKKAFEKIQPGLLVTGT 745

Query: 552 VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESS 610
           V   + + V++ +   G     +   H+ D  E   +   S I+ G + + LLVLD + +
Sbjct: 746 VFEKSVDDVLLKLDEFGLI-ARLDLAHVVDGSESKQISALSKIRVGQKLNDLLVLDIQRA 804

Query: 611 NLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
             L+  SA+ SL  +A+Q  LP+    I   + V G+V NI   G F+ FLG +TG  P+
Sbjct: 805 RRLIKVSARASLKKAAKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEFLGGITGLVPK 864

Query: 667 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
               D   +         Q V + +  ++++  R  LS+K S  +S 
Sbjct: 865 RLLADENASKPDYGMVKSQLVTATVHSIDTDFQRFILSMKPSEATSA 911



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 143/315 (45%), Gaps = 39/315 (12%)

Query: 416  KKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 473
            K F +G+ L   V  V ++  R+ +T K+    SKL    S+ + +  +I  G +TK+ +
Sbjct: 1096 KHFPIGSALKVHVAAVDTEKGRLDLTAKQG--SSKL----SFEDISVGMILPGRVTKVTE 1149

Query: 474  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 533
                ++  + V G     +L  D      ++YH   V++  ++    A+++I+LS  ++P
Sbjct: 1150 KQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANKKISLS--LRP 1207

Query: 534  TRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLA 580
            ++V    L            +K+  +V G V  V  + + V +   G+     +    L+
Sbjct: 1208 SKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTL---GHDVTAYVRVSDLS 1264

Query: 581  DHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 635
            D     + +K   K  ++ DQL+     V+D E   L +S K S+++   + P     + 
Sbjct: 1265 D-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLK 1318

Query: 636  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
               VV G V  + E G F+       ++G   RS+  D +  D    Y  G  V++ I+ 
Sbjct: 1319 VGQVVTGKVRKVEEFGAFIVIDRSANVSGLCHRSEMADKRVDDARTLYEEGDVVKAKIIK 1378

Query: 694  VNSETGRITLSLKQS 708
            V+ E+G+I+ SLK S
Sbjct: 1379 VDRESGKISFSLKAS 1393



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 170/386 (44%), Gaps = 59/386 (15%)

Query: 61   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 107
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 992  FFRPKQIISARILGIHDARSHKFLPISHRSGKLPVFELSVKPSFLQAANPSPLNLEQVQI 1051

Query: 108  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 161
            G     ++ ++ D    ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1052 GSTWVGFINNVADDCLWINLS-PNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAA 1110

Query: 162  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
            +D  +  + L++   + SK   +D   IS+ +++PG     RV  + E  V++       
Sbjct: 1111 VDTEKGRLDLTAKQGS-SKLSFED---ISVGMILPG-----RVTKVTEKQVIMQLSDTVV 1161

Query: 222  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 277
            G V++  L + +    PT   KND      + A ++ VD  ++ + L+L P  + + + P
Sbjct: 1162 GAVNLIDLADDYSKANPTVYHKNDV-----LRACVVGVDKANKKISLSLRPSKVLSSSLP 1216

Query: 278  ---------SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
                       +KV D+  +  V RV D GL + L    T     AYV +SD+++  +++
Sbjct: 1217 VQDPEITSMKQLKVNDVV-RGFVKRVADSGLFVTLGHDVT-----AYVRVSDLSDSYLKE 1270

Query: 328  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAV 384
             +  ++    V+ R+      +G     LK S  +       T  D+K G VV GKV  V
Sbjct: 1271 WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQVVTGKVRKV 1330

Query: 385  DSFGA--IVQFPGGVKALCPLPHMSE 408
            + FGA  ++     V  LC    M++
Sbjct: 1331 EEFGAFIVIDRSANVSGLCHRSEMAD 1356



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 104/493 (21%), Positives = 201/493 (40%), Gaps = 75/493 (15%)

Query: 943  QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1000
            +A++  + P + + ++ G   H G +H++ + D K   +      F+I     AR++  S
Sbjct: 470  EAKVVMVDPGMGVYVQMGSTKHMGFVHVSRLADGKVEHIAPEHGPFRIDSVHEARVVGYS 529

Query: 1001 NKPDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV-----DNEW 1053
                   SF  L+ LS +  ++       +      DV++G  V G + K+       + 
Sbjct: 530  -------SFDGLYLLSFERKVI------EQPFLRLEDVTVGAVVKGKIEKLLIGPAGVDG 576

Query: 1054 ALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1113
             ++T++  +     +    +  + LQ  +++F  G  +T  +LS+N +K+ +RL L+   
Sbjct: 577  LIVTLADGITG--LVPSMHFADTALQFPEKKFREGLTITARILSVNLQKRQIRLTLKK-- 632

Query: 1114 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1173
                     + N     +    DIV G  S       G +V I PH      +  ++   
Sbjct: 633  --------SLLNSESAIWKDYQDIVPGSQSP------GTIVNIQPHGAVVQFYGSVRGFL 678

Query: 1174 VSDPLSGYDEGQF-DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1232
               P+S   E    DP   + +GQ V    L +   +               G  + +  
Sbjct: 679  ---PVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPAL---------------GKLAVSCK 720

Query: 1233 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYV 1291
            D ST  +T  K  EKI+   P ++V G V   +     + L    L A++ L+++ DG  
Sbjct: 721  DPSTFTETYKKAFEKIQ---PGLLVTGTVFEKSVDDVLLKLDEFGLIARLDLAHVVDG-- 775

Query: 1292 ESPEKEF-PIGKLVAGR------VLSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHV 1343
             S  K+   + K+  G+      VL ++   + ++V+ + S  + A Q  +     ++  
Sbjct: 776  -SESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARASLKKAAKQGSLPAKFEDIQE 834

Query: 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1403
            G  V G ++ + S GLFI      + GL     L++++    +      + V   +  +D
Sbjct: 835  GAEVTGFVRNITSDGLFIEFLG-GITGLVPKRLLADENASKPDYGMVKSQLVTATVHSID 893

Query: 1404 KEKRRISLGMKSS 1416
             + +R  L MK S
Sbjct: 894  TDFQRFILSMKPS 906



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 158/375 (42%), Gaps = 41/375 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIF 62
            + +  G    G +  V +  L I L   +RG  R  DA D + L  ++E +        F
Sbjct: 1047 EQVQIGSTWVGFINNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKH--------F 1098

Query: 63   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK----GLSLETVQEGMVLTAYVKSI 118
             +G  +   V  +D +K            RL L  K     LS E +  GM+L   V  +
Sbjct: 1099 PIGSALKVHVAAVDTEKG-----------RLDLTAKQGSSKLSFEDISVGMILPGRVTKV 1147

Query: 119  EDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSS 173
             +   I+     +  G +   +LA++      P +     +L+  V  +D+  K + LS 
Sbjct: 1148 TEKQVIMQLS-DTVVGAVNLIDLADDYS-KANPTVYHKNDVLRACVVGVDKANKKISLSL 1205

Query: 174  DPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
             P  V  S    +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L +
Sbjct: 1206 RPSKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSD 1265

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYD 287
            ++    WK+ +   + V  R+  VDP    + ++L   +L    +AP +   +KVG +  
Sbjct: 1266 SY-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQVV- 1323

Query: 288  QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 347
              KV +V+     ++   S  VS   +   S++A++ V      Y+EG  V+ +I+    
Sbjct: 1324 TGKVRKVEEFGAFIVIDRSANVSGLCHR--SEMADKRVDDARTLYEEGDVVKAKIIKVDR 1381

Query: 348  LEGLATGILKASAFE 362
              G  +  LKAS F+
Sbjct: 1382 ESGKISFSLKASHFK 1396


>gi|158186708|ref|NP_001101074.2| programmed cell death protein 11 [Rattus norvegicus]
          Length = 1876

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 395/1406 (28%), Positives = 652/1406 (46%), Gaps = 160/1406 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LV+ LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLEDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  LD    E GK+ + LS+    + K LS E ++ GM+LT  V 
Sbjct: 138  RLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSAEALRPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FL      E     N G   K G  L  VV  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S +   VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+FTG VD  HL+ 
Sbjct: 256  SVEHSQVSSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFLTFFTGLVDFMHLE- 314

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                      Y+  + V A IL V P +R V L+L P  LH   P + +   ++G + D 
Sbjct: 315  ----PKKMGSYSSKQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
            + V       G +  +    +   AY  +S +++ +     + +K GS  R RI+ +  +
Sbjct: 371  ASVEGFFEKAGAIFRLRDGVL---AYARLSHLSDSKKAFSAEAFKLGSTHRCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S        + D+K G +VKGKV+A+  FG +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KKF  G E+  RVL    ++K++ +T KKTLV SKL  ++ Y +A   L THG
Sbjct: 488  IMMKNPEKKFNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPAITCYEDAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
             I +++ +GC V+FYN VQG  P+ EL      +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  VIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERML 607

Query: 527  LSFMMKPTRVSEDDLVK----------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +      +D+ VK           G LV   V   T N + V ++        +PT
Sbjct: 608  LSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHNIP-AFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I
Sbjct: 667  PHLSDHVANGPLLHHWLQTGDTLHRVLCLSQSEKHILLCRKPALVSTVEGGQDPKSLSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
             P  ++ G+V +I + G FV+F   L+G +P++   D      S+ +  GQ+V + + +V
Sbjct: 727  QPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNV 786

Query: 695  NSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIG 750
            +    R+ LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G
Sbjct: 787  DESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPG 846

Query: 751  SVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
             V++  V E  + G VV       D+    + +  AG  +E G   +  +L V   +  V
Sbjct: 847  MVLDAMVQEVLENGSVVFGGGPVPDLILRASRYHRAGQELEPGQKKKVVVLHVDALKLEV 906

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    ++R           K ++ R+ S+    HQ    IV+ ++E++ V SL E  
Sbjct: 907  HVSLHQDLVNR-----------KARKLRKNSR----HQ---GIVQHLEESFAVASLVETG 948

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL---------LKAI 919
            H + ++ +S  N T  F  ++   GQ V  T+       T G +L +         + A 
Sbjct: 949  HLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVT-GLILAVEGPASKRIRMPAQ 1007

Query: 920  SETETSSSK--------------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGR 965
             ++ET   K              R+KK  S  +G  V   I  +K     +    GF G 
Sbjct: 1008 RDSETVDDKGEEEEEEEEEDLTVRSKKSHSLAIGDKVTGTIKSVKATHAVVTLDDGFIGC 1067

Query: 966  IHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSIK 1016
            IH++ + DD    V    +  K G+ VTAR+I     K++K  P     F   + ELS++
Sbjct: 1068 IHVSRILDDVPEGVSPT-TTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLTILELSVR 1126

Query: 1017 PSMLTVSEIGSKLLFEECDVS---------IGQRVTGYV--YKVDNEWALLTISRHLKAQ 1065
            PS L     G         VS          GQ VT ++  Y V  +W  + I   ++ +
Sbjct: 1127 PSELK----GDYRALNTHSVSPMEKIRQYQAGQTVTCFLKKYNVMKKWLEVDIEPDIRGR 1182

Query: 1066 LFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDIS 1124
            + +L ++     L+   ++F IG+A+   V+  +  +  L L ++ P++           
Sbjct: 1183 IPLLLTSLSFKVLKHPDKKFQIGQAIKATVVGPDIPRAFLCLSLIGPYK----------- 1231

Query: 1125 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1184
                   + EGD+  GR+ K+L    GL V       G+V    L +         Y E 
Sbjct: 1232 -------LEEGDVAMGRVLKVLPN-KGLTVSFPFGRIGKVSVFHLSD--------SYSE- 1274

Query: 1185 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1244
              +PL+ +   + V+C +L  +  +     + LSLR      SS  + +  + ++ P   
Sbjct: 1275 --EPLTDFCPQKIVRCYILSTAHRM-----LALSLR------SSRTNKETKSKIEDP--E 1319

Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIG 1301
            +  IED+    +++GYVK++      I L   +   V  S++S       E   K  P G
Sbjct: 1320 VNSIEDIQAGQLLRGYVKSILPSSVVIGLGPSVMGLVKHSHVSQCVSREKELYDKCLPEG 1379

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            KLV  RVL V P    +E++L  SD+
Sbjct: 1380 KLVTARVLCVNPKKNLIELSLLPSDT 1405



 Score =  277 bits (709), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 137/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)

Query: 1525 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1583
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1586 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1645

Query: 1584 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1643
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1646 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLAKVFERAVQYNEPLKVFLHLAD 1703

Query: 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1702
            +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +
Sbjct: 1704 IYTKSEKFKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPTKE 1763

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
            H+  I + A LEF+ G  +R +++FE  L+ YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1764 HVDVIVKFAQLEFQLGDVERAKAIFENTLTTYPKRTDVWSVYIDMTIKHGSQKEVRDIFE 1823

Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1824 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1868



 Score = 67.4 bits (163), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 145/347 (41%), Gaps = 55/347 (15%)

Query: 1074 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1133
            EP ++  +  +    + V   +L ++   +++RL LRP           IS   + T + 
Sbjct: 314  EPKKMGSYSSK----QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTVLD 369

Query: 1134 EGDIVG-----GRISKILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFD 1187
            +  + G     G I ++  GV           Y R+ H ++ K    ++           
Sbjct: 370  DASVEGFFEKAGAIFRLRDGVLA---------YARLSHLSDSKKAFSAE----------- 409

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
                +  G   +C++++ S+         LSLR S+              +  P     +
Sbjct: 410  ---AFKLGSTHRCRIIDYSQMDELAL---LSLRKSI--------------IAAP---FLR 446

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
             +D+    IV+G V  +   G  + +  ++   V   +L+D  +++PEK+F  G  V  R
Sbjct: 447  YQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCR 506

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            VL  +P +K++ +TLK +   T+    I    +   G    G I RV+ YG  +   N +
Sbjct: 507  VLLCDPEAKKLIMTLKKTLV-TSKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYN-D 564

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + GL    ELS  H+ + E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 565  VQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK 611



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 102/257 (39%), Gaps = 35/257 (13%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            I  G IV G++  +     G++V++G  + G V    L +I + +P   ++ G       
Sbjct: 450  IKTGTIVKGKVLALKPF--GMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTG------- 500

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
             DE   VKC+VL      +      ++L+ +L              V +    +   ED 
Sbjct: 501  -DE---VKCRVLLCDPEAKKLI---MTLKKTL--------------VTSKLPAITCYEDA 539

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
             P +   G +  V   GC +     +   V    LS  ++  PE+ F  G++V   VL+ 
Sbjct: 540  KPGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNC 599

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNL----SNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            EP  +R+ ++ K           + N     S ++ G +V  ++      GL + I   N
Sbjct: 600  EPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHN 659

Query: 1368 LVGLCHVSELSEDHVDN 1384
            +        LS DHV N
Sbjct: 660  IPAFLPTPHLS-DHVAN 675


>gi|295667623|ref|XP_002794361.1| rRNA biogenesis protein RRP5 [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226286467|gb|EEH42033.1| rRNA biogenesis protein RRP5 [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 1815

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 416/1492 (27%), Positives = 714/1492 (47%), Gaps = 202/1492 (13%)

Query: 417  KFKVGAELVFRVL----GVKSKRITVTHKKTLVKSKLAILSSYAEATD-----RLITHGW 467
            K+ VGA++  R++     V+  ++  +  + +VK    +L  Y+ + D      ++    
Sbjct: 417  KYHVGAKIKGRLICTFPTVEPLKLGFSILEHVVKFSPTVLDQYSTSEDIPAVSAIVPEAK 476

Query: 468  ITKIEKH-GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASR 523
            +TK+E   G +V+F N + GF   S L    +D        Y V    + RI+       
Sbjct: 477  VTKVEPGLGVYVQFNNKLYGFVHISRLSDDKVDSISATKGPYKVDSTHEARIVGFSALDN 536

Query: 524  RINLSFMMK----PTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIP 575
               LSF  K    P    ED  V +G++V G ++  +  P+ +  ++  +A G S G +P
Sbjct: 537  LYLLSFERKVIDQPFLRLED--VAVGAVVKGKIEKLLTGPDGIDGLIVSLADGIS-GLVP 593

Query: 576  TEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 633
              HL+D  L+H    +   + G +   ++L ++ E   L L+ K SL+NS      +   
Sbjct: 594  RMHLSDTKLQHP---ERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYGD 650

Query: 634  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
            I P +   G + +I   G  V+F G + GF P S+  +    D S+ + VGQ V  + L 
Sbjct: 651  ILPGNQSPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALT 710

Query: 694  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
            V++E  ++ +S K     ST     +  F                      E    G ++
Sbjct: 711  VHAELRKLVVSCKDP---STSTETYKNAF----------------------ENIQPGDLV 745

Query: 754  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 813
               V E +   +++  E    V      H   G + ++GS + A I    K   LV LS+
Sbjct: 746  SCTVFEKSKEDILLRLEGSGLVARLNAEHVTDGQSSKNGSAL-ACIRVGQKLHDLVILSM 804

Query: 814  KTVF-IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHS 871
            + V  + +     S +QA+++       +DL     V   V+ I+ +   V  L      
Sbjct: 805  QKVHRLIKVSNKPSLKQARQRGELPAKFEDLQEGLKVTGFVKNIIADGLFVEFLRGLTGF 864

Query: 872  IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 931
            +    + D +  K P   +   Q++ + V ++       R +L LK    ++   S  A+
Sbjct: 865  LPKRLMDDDHVAK-PNFGYTLSQTISSFVHSIEDDRQ--RFILSLKENQTSKQHVSDNAR 921

Query: 932  KKS---------------SYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 973
              S               S+D    G + +A+I  +K  ++ ++      GRI ++E+ D
Sbjct: 922  PASNANQSSINPVDGDIKSFDDLTFGRITKAKIVSVKETQINVQLADNIQGRIDVSEIFD 981

Query: 974  DKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTV 1022
            +   + +       FK  Q +  RI+    A+S+K  P   +S    ++ELS KPS L  
Sbjct: 982  EWDAIKDRKQPLRYFKPKQIIPVRIVGIHDARSHKFLPISHRSGKYPVYELSAKPSSLES 1041

Query: 1023 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1082
            ++I    L     V IG    G++  + ++   + IS +++ +L I D + + S + +  
Sbjct: 1042 NDIE---LLSLDKVEIGSSWLGFINNIGDDCLWVNISPNVRGRLRITDVSDDLSLVGDVT 1098

Query: 1083 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1142
            + F +G A+  HV  +N +K  L L         S K  D  N    +   +G+I+ GR+
Sbjct: 1099 KNFPVGSAIKVHVTGVNVDKNRLDL---------SAKHGDPPNKRTISDFSKGEILLGRV 1149

Query: 1143 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            +K+      ++VQ+     G ++  ++ +          D  +  P + + + + ++  +
Sbjct: 1150 TKVSER--QVLVQLSDTTVGAINLIDMAD----------DYTKVIP-ANFHKNEVLRVCI 1196

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            L++    +    + LS+R S           LS+ +      ++ I  L  N IV+G+V+
Sbjct: 1197 LDVDVPNK---KILLSVRPS---------RVLSSSLPIEDPEIKSISQLKVNDIVRGFVR 1244

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             V + G F+ L  ++ A V +S+LSD Y++  + EF + +LV GR++ V+  + +++++L
Sbjct: 1245 RVANNGLFVTLGHEVTAYVRISDLSDSYLKEWQPEFQVDQLVRGRIIFVDAEANKLQMSL 1304

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDH 1381
            K S      ++ I  + +L+ G IV G+++ VE +G FI I+ T NL GLCH +E++E  
Sbjct: 1305 KESVLEPNYKAPIT-IRDLNRGQIVTGRVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQK 1363

Query: 1382 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVG 1441
            V++   ++  G+ VK KI+K+D +K RISLG+K+SYFK         S+++SD       
Sbjct: 1364 VEDARKLFEKGDIVKAKIVKIDHDKERISLGLKASYFK--------ESDDKSDG------ 1409

Query: 1442 SYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPL----------EVNLDDEQ 1491
                    ENS    +  D ESED G + L ++ES   V             E N+ DE 
Sbjct: 1410 --------ENSEYGNEQSDSESEDDGEIEL-ELESDDDVSMGGVDLGGGDGSESNVSDED 1460

Query: 1492 PDM----DNGIS----------QNQGHT--DEAKTIDEKNNRHAKKKEKEEREQEIRAAE 1535
              M    D G++             G T  DEA      ++  A  K+K+ R+ EI+   
Sbjct: 1461 VQMAGTEDTGVTGGLVTSGFDWNGSGTTVVDEANDSCSSSDGQAVPKKKKRRKPEIQVDR 1520

Query: 1536 ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1595
               L+   P++  ++ERL+   P+SS +W+KYMAF L +++V+KAR IAERAL++I I +
Sbjct: 1521 TGDLDAHGPQSIADYERLLLGEPDSSLLWLKYMAFQLELSEVDKAREIAERALRSIRIGQ 1580

Query: 1596 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1655
            + EK NIW+A  NLEN +GN  ++++  VF+RA QY DP+++H  +  +Y ++ +N+ AD
Sbjct: 1581 DAEKFNIWIAMLNLENIFGN--DDSLEDVFKRACQYNDPQEIHERMTSIYIQSGKNEKAD 1638

Query: 1656 ELLYKMI-KKFKHSCKVWLRRVQRL---LKQQQEGVQAVVQRALLSLPRHKHIKFISQTA 1711
            EL    + KKF  S  +++     L   L   Q G +A++ RA+ SLP H H+   S+  
Sbjct: 1639 ELFQTTLKKKFTQSPNIYINYATFLFDTLSDPQRG-RALLPRAIQSLPAHTHVDITSKFG 1697

Query: 1712 ILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS- 1768
             LEF+  NG  +RGR++FE +LS +PKR DLW++ LD EIR GD + +R LFER + L  
Sbjct: 1698 QLEFRSPNGDIERGRTVFEALLSSFPKRVDLWNVLLDLEIRNGDAEQVRRLFERVLGLGH 1757

Query: 1769 -------------LPPKKMKFLFKKYLEYEKSV--GEEERIEYVKQKAMEYV 1805
                         L  K+ KF FKK+L +E+ V  G E+ ++ VK +A  YV
Sbjct: 1758 GIAADGTETGPKKLKDKQAKFFFKKWLAFEEKVGGGNEKMVDEVKARAAAYV 1809



 Score =  171 bits (434), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 191/767 (24%), Positives = 328/767 (42%), Gaps = 57/767 (7%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--- 57
           + I  G K+ G V+ +N  D+ + LP  L G   L   +      ++  + +NED     
Sbjct: 154 KRIVIGSKVLGQVSSINAHDIGLSLPNNLTGYVPLTSISKTFQQKIEKLLNSNEDENEGS 213

Query: 58  ------------LPTIFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLRLSLLYKGLSL 102
                       L + F +GQ +   V   + + K     GK+ I LS+       GLS 
Sbjct: 214 DDGGSDDEEDLDLKSYFKLGQYLRASVTATESETKNPQTKGKKHIQLSVDPRDANSGLSK 273

Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI-DVKPGLLLQGVV 159
             +     + A V S+EDHG ++  GL      GF+    +  +  +  +K G +   VV
Sbjct: 274 SDMVVNTTVQASVVSVEDHGLVMDLGLDDGQTKGFMSSKEIPPDLEVSQIKEGSVFLCVV 333

Query: 160 RSIDRTRKVVYLSSD-PDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFL 217
              +    VV LS++ P   S   +  L    +I+  +PG      +  +   G+    +
Sbjct: 334 TGHNANGSVVKLSANLPAAGSIKKSHYLTSAPTINSFLPGTAAEILLNEVTSTGMAGKIM 393

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL---------TLNP 268
                 VD+    +T  T +    Y+   K+  R++   PT   + L           +P
Sbjct: 394 GMLDAVVDLVQSGSTTGTEDLTTKYHVGAKIKGRLICTFPTVEPLKLGFSILEHVVKFSP 453

Query: 269 YLLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
            +L   +    +  V  I  ++KV +V+ GLG+ +   +          +SD   + +  
Sbjct: 454 TVLDQYSTSEDIPAVSAIVPEAKVTKVEPGLGVYVQFNNKLYGFVHISRLSDDKVDSISA 513

Query: 328 LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IA 383
            +  YK  S    RI+GF  L+ L     +    +       DV  G VVKGK+      
Sbjct: 514 TKGPYKVDSTHEARIVGFSALDNLYLLSFERKVIDQPFLRLEDVAVGAVVKGKIEKLLTG 573

Query: 384 VDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 440
            D   G IV    G+  L P  H+S+ ++  P +KF+ GA++  R+L V  + +++ +T 
Sbjct: 574 PDGIDGLIVSLADGISGLVPRMHLSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTL 633

Query: 441 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
           KK+L+ S+      Y +      + G I  I  HG  V+FY  V+GF P SE+      +
Sbjct: 634 KKSLLNSESPAWKEYGDILPGNQSPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKD 693

Query: 501 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVV 555
           PS  + VGQVV    ++     R++ +S    P+  +E      + ++ G LVS  V   
Sbjct: 694 PSQHFIVGQVVNVHALTVHAELRKLVVS-CKDPSTSTETYKNAFENIQPGDLVSCTVFEK 752

Query: 556 TPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 613
           +   +++ +   G     +  EH+ D    ++ + + + I+ G +   L++L  +  + L
Sbjct: 753 SKEDILLRLEGSGLV-ARLNAEHVTDGQSSKNGSAL-ACIRVGQKLHDLVILSMQKVHRL 810

Query: 614 L--SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
           +  S K SL  + Q  +LP+    +     V G+V NII  G FV FL  LTGF P+   
Sbjct: 811 IKVSNKPSLKQARQRGELPAKFEDLQEGLKVTGFVKNIIADGLFVEFLRGLTGFLPKRLM 870

Query: 670 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
            D   A  +  Y + Q++ S +  +  +  R  LSLK++  S    S
Sbjct: 871 DDDHVAKPNFGYTLSQTISSFVHSIEDDRQRFILSLKENQTSKQHVS 917


>gi|378726693|gb|EHY53152.1| 30S ribosomal protein S1 [Exophiala dermatitidis NIH/UT8656]
          Length = 1811

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 370/1424 (25%), Positives = 677/1424 (47%), Gaps = 182/1424 (12%)

Query: 475  GCFVRFYNGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531
            G +++      GFA  S L  D      E S  + +G   K RI+   P      +S   
Sbjct: 472  GIYLQLSPNTVGFAHVSRLSDDKVEMLSETSGPFKLGSEHKARIIEYNPVDDLYLVSLQK 531

Query: 532  KPTRVS----EDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-H 582
            K    S    ED  V LG++V   ++  +V P+ V  +V  +A+G S G +P  HL+D  
Sbjct: 532  KVLEQSFLRYED--VPLGAIVKATIEKLLVGPDGVRGLVVNLAEGIS-GLVPQIHLSDVE 588

Query: 583  LEHATVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 635
            L+H         P  +F +       ++  D +   + L+ K +L+NS Q+       I 
Sbjct: 589  LKH---------PERKFREGQTVTARVITTDPQKKRIRLTLKKTLVNSDQKPWLRYEDIE 639

Query: 636  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
                  G +  +   G  VRF G + GF P S+  +    D ++ + VGQ V    + VN
Sbjct: 640  SGDSTLGTLTKVDPLGAVVRFYGPVRGFLPVSEMSEAYIKDATEHFRVGQVVTVTAISVN 699

Query: 696  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 755
                R+T+S     C   +                    K N S    +     G++++G
Sbjct: 700  PAERRLTVS-----CRDIN--------------------KSNPSIESSLSSLEPGTIVKG 734

Query: 756  KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 815
             V E +   +++  +    +      H   G++ +     ++A   +   ++L D+ +  
Sbjct: 735  TVFEKSQDDILLRLDGSDAIARLTKDHVSDGSSKKR----ESAFNKIRVGQKLEDVVVLQ 790

Query: 816  VFIDRFREANSNRQAQKKKRKR----EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
            V   R     SN+Q+  K  +     ++ + L  +  V   V  +  + + +S       
Sbjct: 791  VLPKRRLVMVSNKQSLIKAAQEGTLLKSYEQLQPNALVTGFVSNITSDGVFVSFAGGISG 850

Query: 872  I---GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK---AISETETS 925
            +       V   + + F   +F   Q V A V+++       R  L ++   A +  E +
Sbjct: 851  LITKAQVPVEATDERDFGMTKF---QPVTAKVLSIDYKGATPRFWLTMRENPANTRPEPA 907

Query: 926  SSK-------------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 972
            ++                K  +   VG + +A I  +K  ++ ++      GRI  +E+ 
Sbjct: 908  AAAVQDVPALVNPVDTELKTINDLSVGRVTKARIISVKDTQINVELAKDVQGRIDASEIF 967

Query: 973  DDKSNVVEN--LFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLT 1021
            D+  ++ +       F   Q +T +I+   +  + +         K+ ++ELS KPS  T
Sbjct: 968  DEWKDIKDRKRPLKQFSPKQELTVKILGAHDTRNHRFLPLTHRNGKNTVFELSCKPS--T 1025

Query: 1022 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1081
            V+   + +L +  D+S+G     +V  +      + IS  ++ ++   D + + S     
Sbjct: 1026 VAAPNNSIL-KLTDLSVGSSWLAFVNNISENGLWVNISPSVRGRIRATDVSDDLSLAANL 1084

Query: 1082 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1141
            ++ F IG A+  HVL+++ EK  L L  R   DG++  ++ I +      + +G ++ GR
Sbjct: 1085 EKAFPIGSALKVHVLAVDPEKNRLDLTAR--SDGLA-SSLTIKD------VSKGLVLPGR 1135

Query: 1142 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1201
            ++++      ++VQ+     G V   ++ +          D  + +P + + +   ++  
Sbjct: 1136 VTRVTDR--NILVQLSDQAVGAVDLIDMAD----------DYNEANP-AKFQKNDILRVC 1182

Query: 1202 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1261
            VL++    +    ++LS R S           LS+ +      +  I  LS N +V+G++
Sbjct: 1183 VLKVDVPNK---KIQLSTRPS---------KVLSSSMKVTDPEITSISQLSVNDVVRGFI 1230

Query: 1262 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1321
             NV+ KG F+ L   + A V +++LSD +++  +  F   +LV G+++ ++  S  V+++
Sbjct: 1231 SNVSDKGVFVTLGHGVTAFVRVTHLSDSFLKEWKDHFQRDQLVKGKIIMIDQASGHVQMS 1290

Query: 1322 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSED 1380
            LK S      ++ +   ++LHVGDIV G++ +VE +G+FI ++N+ N+ GLCH SE++E 
Sbjct: 1291 LKESALDPNYKAPLT-FNDLHVGDIVTGKVVKVEPFGVFIAVDNSENVRGLCHRSEIAEK 1349

Query: 1381 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEV 1440
             V++   +++ G+ VK K+LK+D  +R+++ GMK+SYF +  D+    SE +SD      
Sbjct: 1350 RVEDATKLFKEGDAVKAKVLKLDPAQRKVNFGMKASYFIDTVDD-DAESEADSDTESHVS 1408

Query: 1441 GSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQ 1500
            G    + L E+    +QD D   + G     +  +     P     +D E  + D+  ++
Sbjct: 1409 GG---AQLGEDEDEDMQDAD---DSGEEEDASDSDDDEDDPDNASEVDGETGESDDSEAE 1462

Query: 1501 NQGHTDEA---------------------------------KTIDEKNNRHAKKKEKEER 1527
             Q   D A                                  + DE  +  AK  +K+++
Sbjct: 1463 EQEVKDSAAASQGKGLNVGGFNWYGMPEAPSTTGSKRAAEESSSDEDADTAAKVPKKKKK 1522

Query: 1528 EQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1587
               I+      L+ D P++ D+FERL+ S P+SS +W++YMAF L + D ++AR I ERA
Sbjct: 1523 RAGIQVDRTGDLDVDGPQSIDDFERLLMSEPDSSLLWLQYMAFHLELGDADQARQIGERA 1582

Query: 1588 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1647
            L++I + +E EKLN+WVA  NLEN YG+  +E +  +F+RA +Y DP++++  L  +Y +
Sbjct: 1583 LKSIGLGQEAEKLNVWVALLNLENAYGD--DETIEAIFKRACEYNDPQEIYSRLTSIYIQ 1640

Query: 1648 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHIK 1705
            + ++  ADEL  +M+KKF    KVW+     L  +    +  +A++ RAL +LP+  H  
Sbjct: 1641 SGKHDKADELFQRMLKKFAQDPKVWINYATFLFDRVGDADKARALLPRALQTLPKFTHFD 1700

Query: 1706 FISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1763
               + A LEFK  NG+A+RGR++FEG++S +PKR DL+++ LD E++ GD + IR LFER
Sbjct: 1701 TTLKFAQLEFKSPNGLAERGRTIFEGLISSFPKRVDLFNVLLDLELKQGDREQIRALFER 1760

Query: 1764 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
              S  L PK+ K+ FK++L +E++ G+E ++E VK +A E++ +
Sbjct: 1761 VFSGRLKPKQAKYFFKRWLAFEEAEGDERQVEAVKARAAEWIRA 1804



 Score =  194 bits (492), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 212/842 (25%), Positives = 368/842 (43%), Gaps = 85/842 (10%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGL-------ARAADALDPILDNEIEANEDN 56
           + ++ G  + G +  V+ + L + LP  L G        A+ ++ +  +L NE +  ED+
Sbjct: 149 KRLTTGSLILGQITAVSSRTLTVALPNNLVGYVPLTSISAQLSEKIQALL-NEKDEEEDS 207

Query: 57  L-----------LPTIFHVGQLVSCIVLQLDDDK---KEIGKRKIWLSLRLSLLYKGLSL 102
                       L   FHVGQ +   V   + D    K   KR+I LS++ SL   G+  
Sbjct: 208 NDSGDEDDDDIALTNYFHVGQYLRVAVTSTEQDNTAGKAPTKRRIELSVQPSLTNVGIGR 267

Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID-VKPGLLLQGVV 159
             +  G  +   V SIEDHG +    L   +  GF+P++ L  +  +  +K G +    V
Sbjct: 268 ANLALGATVQVAVSSIEDHGLVADLALEDQNVRGFIPKSQLPASLPLSSIKTGSVFLCSV 327

Query: 160 RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 219
             +  + +VV LS+DP       T      S+D  +PG      V++  E G+    +  
Sbjct: 328 IELGSSGRVVKLSADPSKWIPLAT----APSVDTFLPGTKAEILVENKTEVGLSGKSMGL 383

Query: 220 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVG-------LTLNPYL 270
              T D+ H  +      +   Y   KK++ R++   P S  + +G       L + P  
Sbjct: 384 VDATADLVHSGSFRDKEAFLAKYEAGKKIHGRLICTFPLSETKKLGFSVLQHVLDMEPTA 443

Query: 271 LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
             +  P     +  I D + V+RV+ GLG+ L +    V       +SD   E + +   
Sbjct: 444 NMDGRPEGTPALSSIVDAAPVIRVEPGLGIYLQLSPNTVGFAHVSRLSDDKVEMLSETSG 503

Query: 331 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDS 386
            +K GS  + RI+ +  ++ L    L+    E     + DV  G +VK  +    +  D 
Sbjct: 504 PFKLGSEHKARIIEYNPVDDLYLVSLQKKVLEQSFLRYEDVPLGAIVKATIEKLLVGPDG 563

Query: 387 F-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 443
             G +V    G+  L P  H+S+ E+  P +KF+ G  +  RV+    + KRI +T KKT
Sbjct: 564 VRGLVVNLAEGISGLVPQIHLSDVELKHPERKFREGQTVTARVITTDPQKKRIRLTLKKT 623

Query: 444 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 503
           LV S       Y +      T G +TK++  G  VRFY  V+GF P SE+      + + 
Sbjct: 624 LVNSDQKPWLRYEDIESGDSTLGTLTKVDPLGAVVRFYGPVRGFLPVSEMSEAYIKDATE 683

Query: 504 MYHVGQVVKCRIMSSIPASRRINLSFM----MKPTRVSEDDLVKLGSLVSGVVDVVTPNA 559
            + VGQVV    +S  PA RR+ +S        P+  S    ++ G++V G V   + + 
Sbjct: 684 HFRVGQVVTVTAISVNPAERRLTVSCRDINKSNPSIESSLSSLEPGTIVKGTVFEKSQDD 743

Query: 560 VVVYVIAKGYSKGTIPTEHLA-DHLEHATVMK-----SVIKPGYEFDQLLVLD--NESSN 611
           +++ +       G+     L  DH+   +  K     + I+ G + + ++VL    +   
Sbjct: 744 ILLRL------DGSDAIARLTKDHVSDGSSKKRESAFNKIRVGQKLEDVVVLQVLPKRRL 797

Query: 612 LLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK- 668
           +++S K SLI +AQ+  L      + PN++V G+V NI   G FV F G ++G   +++ 
Sbjct: 798 VMVSNKQSLIKAAQEGTLLKSYEQLQPNALVTGFVSNITSDGVFVSFAGGISGLITKAQV 857

Query: 669 ---AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHF 722
              A D +   ++K   V   V S  +D    T R  L+++++  ++     A+ +Q+  
Sbjct: 858 PVEATDERDFGMTKFQPVTAKVLS--IDYKGATPRFWLTMRENPANTRPEPAAAAVQDVP 915

Query: 723 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 782
            L   +          +ELK +    +G V + ++    D    ++ E   DV G I   
Sbjct: 916 ALVNPV---------DTELKTINDLSVGRVTKARIISVKD--TQINVELAKDVQGRIDAS 964

Query: 783 QL 784
           ++
Sbjct: 965 EI 966



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 162/367 (44%), Gaps = 27/367 (7%)

Query: 5    NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHV 64
            ++S G      V  ++E  L + +   +RG  RA D  D   D  + AN    L   F +
Sbjct: 1038 DLSVGSSWLAFVNNISENGLWVNISPSVRGRIRATDVSD---DLSLAAN----LEKAFPI 1090

Query: 65   GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
            G  +   VL +D +K  +      L+ R   L   L+++ V +G+VL   V  + D   +
Sbjct: 1091 GSALKVHVLAVDPEKNRLD-----LTARSDGLASSLTIKDVSKGLVLPGRVTRVTDRNIL 1145

Query: 125  LHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV-- 178
            +        G +   ++A    E +    +   +L+  V  +D   K + LS+ P  V  
Sbjct: 1146 VQLS-DQAVGAVDLIDMADDYNEANPAKFQKNDILRVCVLKVDVPNKKIQLSTRPSKVLS 1204

Query: 179  SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 238
            S     D +  SI  L    +V   + ++ + GV ++     T  V + HL ++F    W
Sbjct: 1205 SSMKVTDPEITSISQLSVNDVVRGFISNVSDKGVFVTLGHGVTAFVRVTHLSDSF-LKEW 1263

Query: 239  KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRV 294
            K+ + + + V  +I+ +D  S  V ++L    L  + +AP +   + VGDI    KVV+V
Sbjct: 1264 KDHFQRDQLVKGKIIMIDQASGHVQMSLKESALDPNYKAPLTFNDLHVGDIV-TGKVVKV 1322

Query: 295  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 354
            +   G+ + + ++  +       S++AE+ V    K +KEG  V+ ++L     +     
Sbjct: 1323 E-PFGVFIAVDNSE-NVRGLCHRSEIAEKRVEDATKLFKEGDAVKAKVLKLDPAQRKVNF 1380

Query: 355  ILKASAF 361
             +KAS F
Sbjct: 1381 GMKASYF 1387



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 104/496 (20%), Positives = 206/496 (41%), Gaps = 76/496 (15%)

Query: 367  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVG 421
            T +D+  G V K ++I+V      V+    V+       +  E++ +K    P K+F   
Sbjct: 927  TINDLSVGRVTKARIISVKDTQINVELAKDVQGRIDASEIFDEWKDIKDRKRPLKQFSPK 986

Query: 422  AELVFRVLGVKSKR----ITVTH---KKTLVK------SKLAILSSYAEATDRLITHGW- 467
             EL  ++LG    R    + +TH   K T+ +      +  A  +S  + TD  +   W 
Sbjct: 987  QELTVKILGAHDTRNHRFLPLTHRNGKNTVFELSCKPSTVAAPNNSILKLTDLSVGSSWL 1046

Query: 468  --ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS--SMYHVGQVVKCRIMSSIPASR 523
              +  I ++G +V     V+G    +++  D     +    + +G  +K  +++  P   
Sbjct: 1047 AFVNNISENGLWVNISPSVRGRIRATDVSDDLSLAANLEKAFPIGSALKVHVLAVDPEKN 1106

Query: 524  RINLSFMMK--PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 581
            R++L+       + ++  D+ K G ++ G V  VT   ++V +  +    G +    +AD
Sbjct: 1107 RLDLTARSDGLASSLTIKDVSK-GLVLPGRVTRVTDRNILVQLSDQAV--GAVDLIDMAD 1163

Query: 582  HLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDA----- 631
                A   K      ++ + +L      +D  +  + LS + S + S+    +D      
Sbjct: 1164 DYNEANPAK------FQKNDILRVCVLKVDVPNKKIQLSTRPSKVLSSSMKVTDPEITSI 1217

Query: 632  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
            S +  N VV G++ N+ + G FV     +T F   +   D    +    +   Q V+  I
Sbjct: 1218 SQLSVNDVVRGFISNVSDKGVFVTLGHGVTAFVRVTHLSDSFLKEWKDHFQRDQLVKGKI 1277

Query: 692  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 751
            + ++  +G + +SLK+S     D ++         K  +  +  H            +G 
Sbjct: 1278 IMIDQASGHVQMSLKESAL---DPNY---------KAPLTFNDLH------------VGD 1313

Query: 752  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 804
            ++ GKV +   FGV ++ +   +V G     ++A   VE        G  ++A +L +  
Sbjct: 1314 IVTGKVVKVEPFGVFIAVDNSENVRGLCHRSEIAEKRVEDATKLFKEGDAVKAKVLKLDP 1373

Query: 805  AERLVDLSLK-TVFID 819
            A+R V+  +K + FID
Sbjct: 1374 AQRKVNFGMKASYFID 1389



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 145/694 (20%), Positives = 277/694 (39%), Gaps = 121/694 (17%)

Query: 749  IGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAGA----TVESGSVIQAAILDVA 803
            +G+ ++  V    D G+V     E  +V GFI   QL  +    ++++GSV   +++++ 
Sbjct: 272  LGATVQVAVSSIEDHGLVADLALEDQNVRGFIPKSQLPASLPLSSIKTGSVFLCSVIELG 331

Query: 804  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 863
             + R+V LS           A+ ++              L    +V+  +   K   LV 
Sbjct: 332  SSGRVVKLS-----------ADPSKWIP-----------LATAPSVDTFLPGTKAEILVE 369

Query: 864  SLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIAT-----------VMALPSSSTAGRL 912
            +  E   S     + D          F + ++ +A            +   P S T    
Sbjct: 370  NKTEVGLSGKSMGLVDATADLVHSGSFRDKEAFLAKYEAGKKIHGRLICTFPLSETKKLG 429

Query: 913  LLLLKAISETETSSSKRAKKKSSYDVGSLVQAE-ITEIKP-LELRLKFGIGFHGRIHITE 970
              +L+ + + E +++   + + +  + S+V A  +  ++P L + L+      G  H++ 
Sbjct: 430  FSVLQHVLDMEPTANMDGRPEGTPALSSIVDAAPVIRVEPGLGIYLQLSPNTVGFAHVSR 489

Query: 971  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1030
            ++DDK  ++      FK+G    ARII  +   D     L+ +S++  +L      S L 
Sbjct: 490  LSDDKVEMLSETSGPFKLGSEHKARIIEYNPVDD-----LYLVSLQKKVLE----QSFLR 540

Query: 1031 FEECDVSIGQRVTGYVYKV----DNEWALLT-----ISRHLKAQLFILDSAYEPSELQEF 1081
            +E  DV +G  V   + K+    D    L+      IS  L  Q+ + D      EL+  
Sbjct: 541  YE--DVPLGAIVKATIEKLLVGPDGVRGLVVNLAEGIS-GLVPQIHLSDV-----ELKHP 592

Query: 1082 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE----GDI 1137
            +R+F  G+ VT  V++ + +KK +RL L+        KT+ +++D      +E    GD 
Sbjct: 593  ERKFREGQTVTARVITTDPQKKRIRLTLK--------KTL-VNSDQKPWLRYEDIESGDS 643

Query: 1138 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1197
              G ++K+   +G +V   GP + G +  +E+    + D    +  GQ            
Sbjct: 644  TLGTLTKV-DPLGAVVRFYGP-VRGFLPVSEMSEAYIKDATEHFRVGQV----------- 690

Query: 1198 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1257
                   ++ T       E  L  S   ++ +N S               +  L P  IV
Sbjct: 691  -------VTVTAISVNPAERRLTVSCRDINKSNPS-----------IESSLSSLEPGTIV 732

Query: 1258 QGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR------VLS 1310
            +G V   +     + L      A++   ++SDG   S ++E    K+  G+      VL 
Sbjct: 733  KGTVFEKSQDDILLRLDGSDAIARLTKDHVSDG--SSKKRESAFNKIRVGQKLEDVVVLQ 790

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            V P  + V V+ K S  + A +   + +   L    +V G +  + S G+F++     + 
Sbjct: 791  VLPKRRLVMVSNKQSLIKAAQEGTLLKSYEQLQPNALVTGFVSNITSDGVFVSFAG-GIS 849

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1403
            GL   +++  +  D  +      + V  K+L +D
Sbjct: 850  GLITKAQVPVEATDERDFGMTKFQPVTAKVLSID 883


>gi|258573391|ref|XP_002540877.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901143|gb|EEP75544.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1819

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 380/1345 (28%), Positives = 660/1345 (49%), Gaps = 171/1345 (12%)

Query: 542  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 596
            V +G++V G ++  ++ P+ +  ++  +A G S G IP  H+AD  L+H    +   + G
Sbjct: 564  VTVGAIVKGKIEKLLIGPDGINGLIVSLADGIS-GLIPGMHMADTKLQHP---EKKFREG 619

Query: 597  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
             E   ++L ++ E   L L+ K SL++S   +  D   I P +   G + +I   G  V+
Sbjct: 620  LEVTARILSVNLEKRQLRLTLKKSLLHSESTIWKDYKDISPGNQSPGTLVSIQNNGAVVQ 679

Query: 656  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
            F G + GF P S+  +    D S+ + VGQ V  N+L V+SE GR+ +    SC    D 
Sbjct: 680  FYGAVRGFLPVSEMSEAYIKDPSQHFTVGQVVSVNVLSVDSEKGRLVV----SC---KDP 732

Query: 716  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
            S + E +               G+    +E    G ++ G V E +   +++  E+   +
Sbjct: 733  STVTEAY--------------RGA----LESVRPGQLVSGVVFEKSSDDLLLKLEDGG-L 773

Query: 776  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 835
               ++  QL+ ++    +   A I   AKA               F   ++        +
Sbjct: 774  IARLSAEQLSDSSPSKAASNFARIRVGAKASW------------PFNTQHTESSPPNPGK 821

Query: 836  KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQS 895
                 ++L ++ +V  +V+ +  + + +   E         + D          F+  Q+
Sbjct: 822  LPAKFEELQLNSSVTGLVKNITADGIFVEFLEGLTGFLPKRLVDDEHSNRTDFGFMRSQT 881

Query: 896  VIATVMALPSSSTAGRLLLLLKAIS-ETETSSSKRAKKKS--------------SYD--- 937
            +  +V ++   +   R +L +K +  + E  S ++   +S              S+D   
Sbjct: 882  ISCSVSSIEQDTQ--RFILTMKPVEIKDEGKSHRQGTTRSAGLSVANPVDEDIKSFDDLE 939

Query: 938  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTAR 995
             G   +A+IT +K  +L +       GRI ++E+ D+  ++ +       FK  Q V  +
Sbjct: 940  FGKCTKAKITSVKDTQLNVLLADNVQGRIDVSEIFDNWEDIKDRKQPLRPFKAKQIVPVK 999

Query: 996  IIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
            ++   +    K         K+ ++ELS KPS L   E    L  E+  V +G  + G++
Sbjct: 1000 VLGIHDARTHKFLPISHRSGKTPMFELSTKPSTLASPEY-EPLTIEK--VKVGSSLLGFI 1056

Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
                ++   L IS +++ +L I+D + + +   + ++ F IG A+   V +++ +K  L 
Sbjct: 1057 NNFGDDCLWLNISPNVRGKLRIMDISDDLALAGDIKKTFPIGSALKVTVTAVDVDKNRLD 1116

Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1166
            L  R    G S KT+ IS+      + +G I+ G+++K+       +VQ+   L G +  
Sbjct: 1117 LTAR---HGESSKTLTISD------LSKGMILLGKVTKVTERQA--LVQLNDSLVGAIGL 1165

Query: 1167 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1226
             ++                 D  S  +  +F K +VL +         V++ + +    +
Sbjct: 1166 IDMA----------------DDYSKINPAKFHKNEVLRVCV-------VDVDVPNKKVSL 1202

Query: 1227 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1286
            S   S  LS+ +      +  ++ L    IV+G+V+ V   G F+ML   + A V +S+L
Sbjct: 1203 SVRPSKVLSSSLPVEDPEITSVDKLKVGDIVRGFVRKVADVGLFVMLGHNVTAYVRVSDL 1262

Query: 1287 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1346
            SD Y++  + EF + ++V GR+  V+  + +V++TLK S      +  +  LS+L  G I
Sbjct: 1263 SDAYLKEWQDEFQVDQIVRGRITLVDTEAGKVQMTLKQSALDPNYKPPLQ-LSDLKQGQI 1321

Query: 1347 VIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKE 1405
            V G++++VE +G F+TI+ T NL GLCH SE++E  V +   +Y  G+ VK KILKVD E
Sbjct: 1322 VTGKVRKVEEFGAFVTIDGTANLSGLCHRSEMAEQKVADARKLYEQGDLVKAKILKVDTE 1381

Query: 1406 KRRISLGMKSSYFKND--ADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAV-QDMDME 1462
            K +ISLG+K+SYF  D  AD+    +  + + + ++ G  N  ++L + S    +D+ M 
Sbjct: 1382 KAQISLGLKASYFNEDSEADSDMGEAASDDESSDDDFGGVNLETVLSDDSSDDGEDIIM- 1440

Query: 1463 SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGH--------TDEAKTIDEK 1514
                G + L QI    S+P    N DD Q   D+      G         T  A+   + 
Sbjct: 1441 ----GGVNLPQI----SIPIANANDDDVQMADDDDDDDEAGGLVTGGFDWTGNARKAHQT 1492

Query: 1515 NN-------RHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKY 1567
            +N         A  K+K+ R+ EI+      L+ + P+T  ++ERL+   P+SS +W+KY
Sbjct: 1493 SNNAGSDSDEQAVSKKKKRRKAEIQVDRTGDLDVNGPQTVADYERLLLGEPDSSLLWLKY 1552

Query: 1568 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1627
            MAF L + +V+KAR IAERAL++INI ++ EKLN+WVA  NLEN +G   ++ + +VF+R
Sbjct: 1553 MAFHLELGEVDKAREIAERALRSINISQDTEKLNVWVAMLNLENTFGT--DDRLDEVFKR 1610

Query: 1628 ALQYCDPKKVHLALLGLY---ERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQ 1683
            A QY D +++H  +  ++   ++ E ++ AD++    + KKF  S  ++L     L    
Sbjct: 1611 ACQYNDAQEIHERMASIFIQSDKPEIDQKADQIFQAALKKKFSQSPNLFLNYANFLFDTM 1670

Query: 1684 Q--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTD 1739
               +  +A++ RAL +LP H HI   S+   LEF+  NG  +RGR++FEG+LS +PKR D
Sbjct: 1671 AAPDRGRALLPRALQALPAHTHIDLTSKFGQLEFRSPNGDIERGRTVFEGLLSSFPKRVD 1730

Query: 1740 LWSIYLDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLEYE 1785
            LW+I LD EI++GD + +R LFER + L               L  K+ KF FKK+L +E
Sbjct: 1731 LWNILLDLEIKVGDAEQVRRLFERVLGLGHGVNADGSKSGTKKLKDKQAKFFFKKWLAFE 1790

Query: 1786 KSV--GEEERIEYVKQKAMEYVEST 1808
            +SV  G E+ ++ VK +A EYV+S+
Sbjct: 1791 ESVSGGNEKMVDEVKARAAEYVKSS 1815



 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 193/752 (25%), Positives = 329/752 (43%), Gaps = 65/752 (8%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE------------ 51
           + I+ G KL G V  +   D+ + LP  L G      A+  +L  ++E            
Sbjct: 166 KQITPGSKLLGQVTNIGTHDISLALPNNLTGYIPWT-AVSKLLKEKVEKLLKDADKEDDE 224

Query: 52  --ANEDNLLPTIFHVGQLVSCIV--LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQE 107
              ++D  L +   +GQ     V     +++K    K++I LS+       GLS   +  
Sbjct: 225 ESDDDDFDLKSYVRLGQYFRASVSSTTANNEKGGRSKKRIELSIDPREANSGLSRSDMII 284

Query: 108 GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSI 162
              + A V S+ED+G I+  GL      GF+    L   +G D   VK G +   VV   
Sbjct: 285 DSTVQASVISVEDYGLIMDVGLEDGETRGFMSSKELP--AGTDFSQVKEGAVFLCVVTGH 342

Query: 163 DRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
           +    V+ LS++ +  +            +I+  +PG      V  +  NG+    +   
Sbjct: 343 NTAGNVIKLSANLEKAASGKKSHYISSAPTINTFLPGTAAEILVTEVTPNGMAGKIMGML 402

Query: 221 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH------ 272
              VD  H  +T    +    Y    KV  RI++   +     +G ++  ++L       
Sbjct: 403 DTMVDSVHSGSTDDKRDLTKKYRLGTKVKGRIIYRVSSDEKPKLGFSILDHVLKFSLTTV 462

Query: 273 NRAPPSHVK--VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL-- 328
           + A  S  +  +  I  + KV +VD  LGL + + +T      +V IS V + ++  L  
Sbjct: 463 DAAQDSKRRPAISAIIPEVKVTKVDPALGLYVQLGTT--EHLGFVHISRVKDGKISSLSP 520

Query: 329 -EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IA 383
            E  +K GS    R++GF  ++ L    L+ +  +       DV  G +VKGK+    I 
Sbjct: 521 TEGSFKVGSSHEGRVVGFNAMDNLFLLSLEKNIIDQPFLRLEDVTVGAIVKGKIEKLLIG 580

Query: 384 VDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 440
            D   G IV    G+  L P  HM++ ++  P KKF+ G E+  R+L V  + +++ +T 
Sbjct: 581 PDGINGLIVSLADGISGLIPGMHMADTKLQHPEKKFREGLEVTARILSVNLEKRQLRLTL 640

Query: 441 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
           KK+L+ S+  I   Y + +    + G +  I+ +G  V+FY  V+GF P SE+      +
Sbjct: 641 KKSLLHSESTIWKDYKDISPGNQSPGTLVSIQNNGAVVQFYGAVRGFLPVSEMSEAYIKD 700

Query: 501 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVV 555
           PS  + VGQVV   ++S      R+ +S    P+ V+E      + V+ G LVSGVV   
Sbjct: 701 PSQHFTVGQVVSVNVLSVDSEKGRLVVS-CKDPSTVTEAYRGALESVRPGQLVSGVVFEK 759

Query: 556 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 615
           + + +++  +  G     +  E L+D         S  K    F ++ V    S      
Sbjct: 760 SSDDLLLK-LEDGGLIARLSAEQLSDS--------SPSKAASNFARIRVGAKASWPFNTQ 810

Query: 616 AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 675
              S   +  +LP+    +  NS V G V NI   G FV FL  LTGF P+ + VD + +
Sbjct: 811 HTESSPPNPGKLPAKFEELQLNSSVTGLVKNITADGIFVEFLEGLTGFLPK-RLVDDEHS 869

Query: 676 DLSKTYYV-GQSVRSNILDVNSETGRITLSLK 706
           + +   ++  Q++  ++  +  +T R  L++K
Sbjct: 870 NRTDFGFMRSQTISCSVSSIEQDTQRFILTMK 901



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 190/430 (44%), Gaps = 51/430 (11%)

Query: 45   ILDN--EIEANEDNLLPTIFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRL 93
            I DN  +I+  +  L P  F   Q+V   VL + D +           GK  ++ LS + 
Sbjct: 973  IFDNWEDIKDRKQPLRP--FKAKQIVPVKVLGIHDARTHKFLPISHRSGKTPMFELSTKP 1030

Query: 94   SLL----YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI-- 147
            S L    Y+ L++E V+ G  L  ++ +  D    L+   P+  G L   +++++  +  
Sbjct: 1031 STLASPEYEPLTIEKVKVGSSLLGFINNFGDDCLWLNIS-PNVRGKLRIMDISDDLALAG 1089

Query: 148  DVKP----GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 203
            D+K     G  L+  V ++D  +  + L++     SK +T       I  L  GM++  +
Sbjct: 1090 DIKKTFPIGSALKVTVTAVDVDKNRLDLTARHGESSKTLT-------ISDLSKGMILLGK 1142

Query: 204  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 263
            V  + E   ++       G + +  + + +   N    +++++ +   ++ VD  ++ V 
Sbjct: 1143 VTKVTERQALVQLNDSLVGAIGLIDMADDYSKIN-PAKFHKNEVLRVCVVDVDVPNKKVS 1201

Query: 264  LTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 314
            L++ P  + + + P           +KVGDI         D GL ++L    T     AY
Sbjct: 1202 LSVRPSKVLSSSLPVEDPEITSVDKLKVGDIVRGFVRKVADVGLFVMLGHNVT-----AY 1256

Query: 315  VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDV 371
            V +SD+++  +++ + +++    VR RI       G     LK SA +         SD+
Sbjct: 1257 VRVSDLSDAYLKEWQDEFQVDQIVRGRITLVDTEAGKVQMTLKQSALDPNYKPPLQLSDL 1316

Query: 372  KPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
            K G +V GKV  V+ FGA V   G   +  LC    M+E ++    K ++ G  +  ++L
Sbjct: 1317 KQGQIVTGKVRKVEEFGAFVTIDGTANLSGLCHRSEMAEQKVADARKLYEQGDLVKAKIL 1376

Query: 430  GVKSKRITVT 439
             V +++  ++
Sbjct: 1377 KVDTEKAQIS 1386



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 134/597 (22%), Positives = 239/597 (40%), Gaps = 105/597 (17%)

Query: 824  ANSNRQAQKKKR------KREASK-----DLGVHQTVNAIVEIVKENYLVLSLP-EYNHS 871
            AN+ +  + KKR       REA+      D+ +  TV A V  V++  L++ +  E   +
Sbjct: 252  ANNEKGGRSKKRIELSIDPREANSGLSRSDMIIDSTVQASVISVEDYGLIMDVGLEDGET 311

Query: 872  IGYASVSDYNTQKFPQ----KQFLNGQSVIATVMALPSSSTAGRLLLLL----KAISETE 923
             G+ S     +++ P      Q   G   +  V      +TAG ++ L     KA S  +
Sbjct: 312  RGFMS-----SKELPAGTDFSQVKEGAVFLCVVTG---HNTAGNVIKLSANLEKAASGKK 363

Query: 924  TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH------ITEVNDDKSN 977
            +     A   +++  G+  +  +TE+ P         G  G+I       +  V+   ++
Sbjct: 364  SHYISSAPTINTFLPGTAAEILVTEVTP--------NGMAGKIMGMLDTMVDSVHSGSTD 415

Query: 978  VVENLFSNFKIGQTVTARII---AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC 1034
               +L   +++G  V  RII   +   KP +  S L  + +K S+ TV            
Sbjct: 416  DKRDLTKKYRLGTKVKGRIIYRVSSDEKPKLGFSILDHV-LKFSLTTVDAAQDSKRRPAI 474

Query: 1035 DVSIGQRVTGYVYKVDNEWAL---LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1091
               I +     V KVD    L   L  + HL           + S L   +  F +G + 
Sbjct: 475  SAIIPEV---KVTKVDPALGLYVQLGTTEHLGFVHISRVKDGKISSLSPTEGSFKVGSSH 531

Query: 1092 TGHVLSINKEKKLLRLVL------RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1145
             G V+  N    L  L L      +PF   + D TV             G IV G+I K+
Sbjct: 532  EGRVVGFNAMDNLFLLSLEKNIIDQPFLR-LEDVTV-------------GAIVKGKIEKL 577

Query: 1146 L---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            L    G+ GL+V +   + G +    + +  +  P     E +F       EG  V  ++
Sbjct: 578  LIGPDGINGLIVSLADGISGLIPGMHMADTKLQHP-----EKKFR------EGLEVTARI 626

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            L ++   R    + L+L+ SL    ST   D               +D+SP     G + 
Sbjct: 627  LSVNLEKR---QLRLTLKKSLLHSESTIWKDY--------------KDISPGNQSPGTLV 669

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            ++ + G  +     +   + +S +S+ Y++ P + F +G++V+  VLSV+    R+ V+ 
Sbjct: 670  SIQNNGAVVQFYGAVRGFLPVSEMSEAYIKDPSQHFTVGQVVSVNVLSVDSEKGRLVVSC 729

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K  D  T +++    L ++  G +V G +    S  L + +E+  L+      +LS+
Sbjct: 730  K--DPSTVTEAYRGALESVRPGQLVSGVVFEKSSDDLLLKLEDGGLIARLSAEQLSD 784



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 124/551 (22%), Positives = 210/551 (38%), Gaps = 118/551 (21%)

Query: 943  QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1000
            + ++T++ P L L ++ G   H G +HI+ V D K + +     +FK+G +   R++  +
Sbjct: 480  EVKVTKVDPALGLYVQLGTTEHLGFVHISRVKDGKISSLSPTEGSFKVGSSHEGRVVGFN 539

Query: 1001 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV---DNEWALLT 1057
                M   FL  LS++ +++       +      DV++G  V G + K+    +    L 
Sbjct: 540  A---MDNLFL--LSLEKNII------DQPFLRLEDVTVGAIVKGKIEKLLIGPDGINGLI 588

Query: 1058 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF----Q 1113
            +S        I       ++LQ  +++F  G  VT  +LS+N EK+ LRL L+      +
Sbjct: 589  VSLADGISGLIPGMHMADTKLQHPEKKFREGLEVTARILSVNLEKRQLRLTLKKSLLHSE 648

Query: 1114 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1173
              I     DIS  N            G +  I +   G VVQ    + G +  +E+    
Sbjct: 649  STIWKDYKDISPGNQSP---------GTLVSIQNN--GAVVQFYGAVRGFLPVSEMSEAY 697

Query: 1174 VSDPLSGYDEGQF--------------------DP----------LSGYDEGQFVKCKVL 1203
            + DP   +  GQ                     DP          L     GQ V   V 
Sbjct: 698  IKDPSQHFTVGQVVSVNVLSVDSEKGRLVVSCKDPSTVTEAYRGALESVRPGQLVSGVVF 757

Query: 1204 EIS------RTVRGTFHVELSLRSSLDGMSSTNSSDLS------------------TDVD 1239
            E S      +   G     LS     D   S  +S+ +                  +   
Sbjct: 758  EKSSDDLLLKLEDGGLIARLSAEQLSDSSPSKAASNFARIRVGAKASWPFNTQHTESSPP 817

Query: 1240 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1299
             PGK   K E+L  N  V G VKN+T+ G F+     L   +    + D +    +  F 
Sbjct: 818  NPGKLPAKFEELQLNSSVTGLVKNITADGIFVEFLEGLTGFLPKRLVDDEHSNRTDFGFM 877

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSD------------SRTASQS-------EINNLSN 1340
              + ++  V S+E  ++R  +T+K  +            +R+A  S       +I +  +
Sbjct: 878  RSQTISCSVSSIEQDTQRFILTMKPVEIKDEGKSHRQGTTRSAGLSVANPVDEDIKSFDD 937

Query: 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---------YRA 1391
            L  G     +I  V+   L + + + N+ G   VSE+     DN E I         ++A
Sbjct: 938  LEFGKCTKAKITSVKDTQLNVLLAD-NVQGRIDVSEI----FDNWEDIKDRKQPLRPFKA 992

Query: 1392 GEKVKVKILKV 1402
             + V VK+L +
Sbjct: 993  KQIVPVKVLGI 1003


>gi|261204755|ref|XP_002629591.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis SLH14081]
 gi|239587376|gb|EEQ70019.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis SLH14081]
          Length = 1817

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 389/1438 (27%), Positives = 694/1438 (48%), Gaps = 200/1438 (13%)

Query: 468  ITKIEKH-GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASR 523
            +TK+E   G +V+F +   GFA  S L    +D        Y V    + RI+     S 
Sbjct: 478  VTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVDSTHEARIVG---FSA 534

Query: 524  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 574
              NL  +    +V +   ++L     G++V G ++  ++  + +  ++  +A G S G +
Sbjct: 535  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLIVSLADGIS-GLV 593

Query: 575  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 632
               H++D  L+H    +   + G +   ++L ++ +   L L+ K SL+NS      D +
Sbjct: 594  AGMHMSDTKLQHP---EKKFREGAQVSARILSVNLDKRQLRLTLKKSLLNSESPAWKDYN 650

Query: 633  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + VGQ V  + L
Sbjct: 651  GILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNVGQVVNVHAL 710

Query: 693  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 752
            +V+ E  ++ +S K        +SF + +    E I       H G     V G +    
Sbjct: 711  NVDVELRKLVVSCKDP------SSFTEAYKSAFENI-------HPGDT---VSGTVFEKS 754

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDL 811
             E  + +  D G+V          G  + + +A A +  G  + +  IL++ KA RL+ +
Sbjct: 755  SEDILLKLEDTGLVARLNAEHVADGQTSRNGVALARIRVGQKLNELLILNIQKAHRLIKV 814

Query: 812  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
            + K           S +QA+++       +DL     V   V+ +  + + +   E+   
Sbjct: 815  TNKP----------SLKQARQRGELPARFEDLKEGAKVTGFVKNITVDGMFV---EFLGG 861

Query: 872  I-GYAS---VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
            I G+A    V D +  K P   +   Q +  +V ++       R +L +K     + +S 
Sbjct: 862  ITGFAPKRLVDDDHVNK-PDFGYFLSQPISLSVESIEDDRQ--RFILRMKEQVNKQRASD 918

Query: 928  -----------------KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
                             +  K       G + +A++  +K  ++ ++      GRI ++E
Sbjct: 919  GVKPANNVNQSSINPIDENIKSLDDLTFGRVTKAKVVSVKETQINVQLAENIQGRIDVSE 978

Query: 971  VND--DKSNVVENLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWELSIKPSM 1019
            V D  D     +     FK  Q +  R++    A+S+K  P   +S    ++ELS KPS 
Sbjct: 979  VFDSWDAIKDRKQPLKYFKAKQIIPVRVLGIHDARSHKFLPISHRSGKYPVFELSAKPSS 1038

Query: 1020 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1079
            L  +++    L +   V IG    G+V  + ++   + IS +++ +L   D + + S + 
Sbjct: 1039 LQSTDLEPLSLDK---VKIGSSWVGFVNNIGDDCLWINISPNVRGRLRFTDLSDDLSLVG 1095

Query: 1080 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----PFQDGISDKTVDISNDNMQTFIHEG 1135
            +  + F +G A+  HV  ++ +K  L L  R    P +  ISD            F+ +G
Sbjct: 1096 DIAKNFPVGSALKIHVTGVDADKNRLDLSARHGGLPNRKSISD------------FL-KG 1142

Query: 1136 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1195
            +I+ GR++++       +VQ+     G ++  ++ +          D  + +P + + + 
Sbjct: 1143 EILLGRVTRVTERQA--LVQLSNSTVGAINLIDMAD----------DFSKVNP-ADFHKN 1189

Query: 1196 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
            + ++  +++I    +    + LS+R S           LS+ +      +  I  L  N 
Sbjct: 1190 EVIRVCIIDIDVPNK---KILLSVRPS---------RVLSSSLPIQDPEINSISQLKVND 1237

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            IV+G+V+ V + G F+ L   + A + +S+LSD Y++  + EF + +LV GR++  +  S
Sbjct: 1238 IVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQNEFQVDQLVRGRIILADAES 1297

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHV 1374
             +++++LK S      ++ I  + +L  G IV G+++ VE +G FI I+ T NL GLCH 
Sbjct: 1298 NKLQMSLKESVLEPNYKTPIT-IKDLKRGQIVTGKVRNVEEFGAFIVIDGTANLSGLCHR 1356

Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1434
            +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+       S +E +D
Sbjct: 1357 TEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERISLGLKASYFKD-------SDDESND 1409

Query: 1435 EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM 1494
            E+ ++V   N S   ++       MD+E E G  + +  ++   ++     N DD + D 
Sbjct: 1410 ESADDVSEENVSESEDDGG-----MDLELESGDDISMGGVDMEDAI-----NGDDSESDA 1459

Query: 1495 DNGISQNQGHTDEA------------------------KTIDEKNNRHAKKKEKEEREQE 1530
             +   Q  G  D A                         +  E +N+   KK++  R+ E
Sbjct: 1460 SDEDVQMAGTEDPAVKGGLVTSGFDWNGNTTTGAGEGNDSGSESDNQTVTKKKR--RKPE 1517

Query: 1531 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1590
            I+      L+ + P++  ++ERL+   P+SS +W+KYMAF L +++V+KAR IAERAL++
Sbjct: 1518 IQVDRTGDLDANGPQSIADYERLLLGEPDSSLLWLKYMAFQLELSEVDKAREIAERALRS 1577

Query: 1591 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1650
            I+I ++ EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  L  +Y ++ +
Sbjct: 1578 ISIGQDTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHERLTSIYIQSGK 1635

Query: 1651 NKLADELLYKMI-KKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFI 1707
            N  ADEL    + KKF  S  ++L     L     + E  +A++ RA+ +LP H H+   
Sbjct: 1636 NDKADELFQATLKKKFTQSPNIYLNFATFLFDTLAEPERARALLPRAIQALPAHTHVDIT 1695

Query: 1708 SQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765
            S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI+ G+V+ +R LFER +
Sbjct: 1696 SKFGQLEFRSPNGDIERGRTIFEGLLSSFPKRVDLWNVLLDLEIKSGEVEQVRRLFERVL 1755

Query: 1766 SLS--------------LPPKKMKFLFKKYLEYEKSVGE--EERIEYVKQKAMEYVES 1807
             L               L  K+ KF FKK+L +E+  G+  E+ ++ VK +A EYV++
Sbjct: 1756 GLGHGIAADGTKTVSKKLKDKQAKFFFKKWLTFEEKAGDGNEKMVDEVKARAAEYVKA 1813



 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 183/758 (24%), Positives = 321/758 (42%), Gaps = 54/758 (7%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNLLP- 59
           + I  G K+ G V+ +N  D+ + LP  L G   +   +  L   ++N +++N++     
Sbjct: 156 KRIVIGSKVLGQVSSINAHDIGLSLPNNLTGYIPITAVSRTLQQKIENLLKSNQEENDNS 215

Query: 60  -------------TIFHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLE 103
                        + F +GQ +   VL  + +    K  GK+ I LS+       GLS  
Sbjct: 216 DDDEEEEEDLDLNSYFKLGQYLRASVLSTETEVNHGKTKGKKHIRLSVDPREANSGLSKS 275

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI-DVKPGLLLQGVVR 160
            +     + A V S+EDHG ++  GL      GF+    +  +  +  +K G +   VV 
Sbjct: 276 DLVVNATVQASVLSVEDHGLVMDLGLQDGQTKGFMSSKEIPHDLEVSQIKEGSVFLCVVT 335

Query: 161 SIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
             +    VV LS++  T              +I+  +PG      +  +   G+    + 
Sbjct: 336 GHNADGSVVKLSANLPTAGSIKKSHFLTSAPTINSFLPGTAAEILLTEVTSTGMAGKIMG 395

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN---------PY 269
                VD+     T    +    Y+   K+  R++   PT   + L  +         P 
Sbjct: 396 MLNAVVDLVQSGTTTGKEDITTKYHVGAKIKGRLICTFPTVEPMKLGFSILDHVVKFTPT 455

Query: 270 LLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
           +L  +        +  I  + KV +V+ GLG+ +              +SD   + +   
Sbjct: 456 VLEQKPSSEDTPAISAIIPEVKVTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISAT 515

Query: 329 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAV 384
           +  YK  S    RI+GF  L+ L    L+    +       DV  G VV+GK+    I  
Sbjct: 516 QGPYKVDSTHEARIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGT 575

Query: 385 DSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHK 441
           D   G IV    G+  L    HMS+ ++  P KKF+ GA++  R+L V    +++ +T K
Sbjct: 576 DGISGLIVSLADGISGLVAGMHMSDTKLQHPEKKFREGAQVSARILSVNLDKRQLRLTLK 635

Query: 442 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           K+L+ S+      Y        + G I  I+ HG  V+FY  V+GF P SE+      +P
Sbjct: 636 KSLLNSESPAWKDYNGILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDP 695

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVT 556
           +  ++VGQVV    ++     R++ +S    P+  +E      + +  G  VSG V   +
Sbjct: 696 AQHFNVGQVVNVHALNVDVELRKLVVS-CKDPSSFTEAYKSAFENIHPGDTVSGTVFEKS 754

Query: 557 PNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL- 614
              +++ +   G     +  EH+AD       V  + I+ G + ++LL+L+ + ++ L+ 
Sbjct: 755 SEDILLKLEDTGLV-ARLNAEHVADGQTSRNGVALARIRVGQKLNELLILNIQKAHRLIK 813

Query: 615 -SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
            + K SL  + Q  +LP+    +   + V G+V NI   G FV FLG +TGFAP+    D
Sbjct: 814 VTNKPSLKQARQRGELPARFEDLKEGAKVTGFVKNITVDGMFVEFLGGITGFAPKRLVDD 873

Query: 672 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
                    Y++ Q +  ++  +  +  R  L +K+  
Sbjct: 874 DHVNKPDFGYFLSQPISLSVESIEDDRQRFILRMKEQV 911



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 106/497 (21%), Positives = 200/497 (40%), Gaps = 72/497 (14%)

Query: 370  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVGAEL 424
            D+  G V K KV++V      VQ    ++    +  +   ++ +K    P K FK    +
Sbjct: 943  DLTFGRVTKAKVVSVKETQINVQLAENIQGRIDVSEVFDSWDAIKDRKQPLKYFKAKQII 1002

Query: 425  VFRVLGVKSKR----ITVTHKKTLVKS-KLAILSSYAEATDR--------LITHGWITKI 471
              RVLG+   R    + ++H+       +L+   S  ++TD          I   W+  +
Sbjct: 1003 PVRVLGIHDARSHKFLPISHRSGKYPVFELSAKPSSLQSTDLEPLSLDKVKIGSSWVGFV 1062

Query: 472  EKHG--C-FVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIMSSIPASRRIN 526
               G  C ++     V+G    ++L  D     + +  + VG  +K  +        R++
Sbjct: 1063 NNIGDDCLWINISPNVRGRLRFTDLSDDLSLVGDIAKNFPVGSALKIHVTGVDADKNRLD 1122

Query: 527  LSFMMK--PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 584
            LS      P R S  D +K G ++ G V  VT    +V +     S  T+   +L D  +
Sbjct: 1123 LSARHGGLPNRKSISDFLK-GEILLGRVTRVTERQALVQL-----SNSTVGAINLIDMAD 1176

Query: 585  HATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQLP------SDASHIHP 636
              + +        E  ++ ++D +  N  +LLS + S + S+  LP      +  S +  
Sbjct: 1177 DFSKVNPADFHKNEVIRVCIIDIDVPNKKILLSVRPSRVLSSS-LPIQDPEINSISQLKV 1235

Query: 637  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
            N +V G+V  +   G FV     +T +   S   D    +    + V Q VR  I+  ++
Sbjct: 1236 NDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQNEFQVDQLVRGRIILADA 1295

Query: 697  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 756
            E+ ++ +SLK+S         ++ ++     I  L+                 G ++ GK
Sbjct: 1296 ESNKLQMSLKESV--------LEPNYKTPITIKDLKR----------------GQIVTGK 1331

Query: 757  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLV 809
            V    +FG  +  +  +++ G     ++A   VE        G +++A I+ +   +  +
Sbjct: 1332 VRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERI 1391

Query: 810  DLSLK-TVFIDRFREAN 825
             L LK + F D   E+N
Sbjct: 1392 SLGLKASYFKDSDDESN 1408



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 107/534 (20%), Positives = 223/534 (41%), Gaps = 75/534 (14%)

Query: 931  KKKSSYDVGSLV----QAEITEIKP-LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 985
            +K SS D  ++     + ++T+++P L + ++F    +G  HI+ ++D+K + +      
Sbjct: 459  QKPSSEDTPAISAIIPEVKVTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGP 518

Query: 986  FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1045
            +K+  T  ARI+  S   +     L+ LS++  ++       +      DV++G  V G 
Sbjct: 519  YKVDSTHEARIVGFSALDN-----LYLLSLERKVI------DQPFLRLEDVTVGAVVRGK 567

Query: 1046 VYKV---DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1102
            + K+    +  + L +S        +       ++LQ  +++F  G  V+  +LS+N +K
Sbjct: 568  IEKLLIGTDGISGLIVSLADGISGLVAGMHMSDTKLQHPEKKFREGAQVSARILSVNLDK 627

Query: 1103 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1162
            + LRL L+            + N     +     I+ G  S       G ++ I  H   
Sbjct: 628  RQLRLTLKK----------SLLNSESPAWKDYNGILPGNQSP------GTIISIQSHGAI 671

Query: 1163 RVHFTELKNICVSDPLSGYDEGQF-DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1221
               + E++      P+S   E    DP   ++ GQ V    L          +V++ LR 
Sbjct: 672  VQFYGEVRGFL---PVSEMSEAYIKDPAQHFNVGQVVNVHAL----------NVDVELRK 718

Query: 1222 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK-LDAK 1280
             +  +S  + S  +        +    E++ P   V G V   +S+   + L    L A+
Sbjct: 719  LV--VSCKDPSSFTE------AYKSAFENIHPGDTVSGTVFEKSSEDILLKLEDTGLVAR 770

Query: 1281 VLLSNLSDGYVESPEKEFPIGKLVAGR------VLSVEPLSKRVEVTLKTSDSRTASQSE 1334
            +   +++DG  ++      + ++  G+      +L+++   + ++VT K S  +   + E
Sbjct: 771  LNAEHVADG--QTSRNGVALARIRVGQKLNELLILNIQKAHRLIKVTNKPSLKQARQRGE 828

Query: 1335 I-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
            +     +L  G  V G +K +   G+F+      + G      + +DHV+  +  Y   +
Sbjct: 829  LPARFEDLKEGAKVTGFVKNITVDGMFVEFLG-GITGFAPKRLVDDDHVNKPDFGYFLSQ 887

Query: 1394 KVKVKILKVDKEKRRISLGMKSSYFKN-------DADNLQMSSEEESDEAIEEV 1440
             + + +  ++ +++R  L MK    K         A+N+  SS    DE I+ +
Sbjct: 888  PISLSVESIEDDRQRFILRMKEQVNKQRASDGVKPANNVNQSSINPIDENIKSL 941



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 116/251 (46%), Gaps = 30/251 (11%)

Query: 190  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 249
            SI   + G ++  RV  + E   ++       G +++  + + F   N   D+++++ + 
Sbjct: 1135 SISDFLKGEILLGRVTRVTERQALVQLSNSTVGAINLIDMADDFSKVN-PADFHKNEVIR 1193

Query: 250  ARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGLG 299
              I+ +D  ++ + L++ P  + + + P         S +KV DI  +  V RV + GL 
Sbjct: 1194 VCIIDIDVPNKKILLSVRPSRVLSSSLPIQDPEINSISQLKVNDIV-RGFVRRVANNGLF 1252

Query: 300  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 359
            + L    T     AY+ ISD+++  +++ + +++    VR RI+    L    +  L+ S
Sbjct: 1253 VTLGHDVT-----AYIRISDLSDSYLKEWQNEFQVDQLVRGRII----LADAESNKLQMS 1303

Query: 360  AFEGLV-------FTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFE 410
              E ++        T  D+K G +V GKV  V+ FGA +   G   +  LC    M+E +
Sbjct: 1304 LKESVLEPNYKTPITIKDLKRGQIVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGK 1363

Query: 411  IVKPGKKFKVG 421
            +    K F+ G
Sbjct: 1364 VEDARKVFEKG 1374


>gi|296423848|ref|XP_002841464.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637704|emb|CAZ85655.1| unnamed protein product [Tuber melanosporum]
          Length = 1787

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 398/1504 (26%), Positives = 716/1504 (47%), Gaps = 187/1504 (12%)

Query: 386  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLV 445
            + G + +  G V A     H S +       KFKVG ++  RV+       T      L 
Sbjct: 386  AVGIVGKVMGLVDATMDFFHASGWREKDIESKFKVGEKIKARVIA------TYAEPHKLA 439

Query: 446  KSKLAILSSYAEA----------TDRLITHGWITKIE-KHGCFVRF-YNGVQGFAPRSEL 493
             S L  + S+             T  +I    I  IE K G  +     GV GF   S +
Sbjct: 440  LSILPHVLSFTRPIENEPTTILPTSTIINSAKILNIEPKTGLSLDVGVPGVPGFVHISRV 499

Query: 494  GLDPGCE----PSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTRVSEDDLVKLG 545
              D   E     S ++  G V   RI+  +S+     +++    + +P    ED  +K+G
Sbjct: 500  SSDSRIEVLSKDSGLHQTGSVHMARIIGYNSMDGLYLVSMEQKVLDQPFLRVED--IKIG 557

Query: 546  SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLL 603
             +V G ++ V  +  V+  +A+G + G +   HL+D  L+H    +   + G E   ++L
Sbjct: 558  EVVKGTINRVLDSGRVIVSLAEGIT-GIVDELHLSDIKLKHP---EKKFREGIEVKARVL 613

Query: 604  VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            + D     ++L+ K +++NS   + S        +   G +  I+ +G  V+F   + GF
Sbjct: 614  LTDPSKRKVMLTLKKAIVNSDAPIISSYEDTSSGTRSVGTLVKILPSGAVVKFFSDVCGF 673

Query: 664  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 723
             P S+  +    D  + + VGQSV  ++L V+    ++ +S +          F + H  
Sbjct: 674  LPISEMSEAYIQDPHEHFTVGQSVNVHVLSVDPTNQKLRVSCRDPNL------FGEVH-- 725

Query: 724  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE--SNDFGVVVSFEEHSDVYGFITH 781
               K+A+ +                 G V+ G V E  ++D  V ++      + G +  
Sbjct: 726  ---KVALAK--------------LPPGDVVSGTVVEKSADDLIVEINGLGAEGIRGVLVI 768

Query: 782  HQLAGATVE----------SGSVIQAA-ILDVAKAERLVDLSLKTVFIDRFREANSNRQA 830
             QL   + E          +G  +    +L+  +  R + LS+K   +          +A
Sbjct: 769  GQLTDGSREKSLGVFKKLRAGQKLDGLLVLEKHEERRSITLSMKPSLV----------KA 818

Query: 831  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQF 890
             K+ R     +D+   + V   V     + L +        + Y        Q  P   F
Sbjct: 819  AKRGRMISKFEDVNEGERVKGWVRNTTLHGLFVGFAGGIVGVVYKRDLPAEVQSLPNFGF 878

Query: 891  LNGQSVIATVMALPSSSTAGRLLL-------LLKAISETETSSSK--------RAKKKSS 935
            +  QS+   V+ +  S    RL L        + A++ T  +S +        R K    
Sbjct: 879  VKNQSITGRVVYIDPSERRFRLSLNSAKSEEKVSAVANTAGNSERLTVNPVDARFKLIDD 938

Query: 936  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVT 993
            Y  G L +A++  I+  +L +K      GRI ++ V +  D     ++  + FK G  + 
Sbjct: 939  YTPGKLTKAKVVSIQETQLNVKLADNVQGRIDVSLVFETWDAIKDKKSPLALFKKGDVLD 998

Query: 994  ARII-----------AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1042
            A++I           A +++    K+ ++ELS KPS +    I   +   E D++     
Sbjct: 999  AKVIGIHDARNHRFLAITHQKSNTKTPIFELSAKPSHIKEEGIEGCITKLE-DITPNSTW 1057

Query: 1043 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1102
              ++  +  E A   I   ++ ++ ILD +   ++L+  Q+ F +G A+   VL ++ E 
Sbjct: 1058 VTFLNNISEECAWANIMPDIRGRIRILDLSDNVAQLKTLQKSFPVGCALKCQVLRVDSEH 1117

Query: 1103 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1162
              L L  R      S  +  ++ D +     +G +V GR++K+      ++VQI   + G
Sbjct: 1118 SKLDLSAR------SPSSSALTFDKLA----KGMVVPGRVTKVTDR--QVLVQISESVSG 1165

Query: 1163 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1222
             +  T+L     +D  S  +       +GY + + ++  +++I    +    V LS R S
Sbjct: 1166 PISLTDL-----ADDFSQAN------TNGYSKNEVIRVCIIDIDSPNK---RVTLSARPS 1211

Query: 1223 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1282
               +S         D+      ++ I ++    I +G+VK V+ KG F+ +   + A   
Sbjct: 1212 RVMIS---------DLPVKDPEIQAIVNVKVGDIRRGFVKQVSPKGLFVTIGGNVTAWTK 1262

Query: 1283 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1342
            +S+LSDG+++  E  F +G+LV G++++V+     V+++L+ SD     + +  + S+L 
Sbjct: 1263 ISDLSDGFLKEWEGLFTVGQLVKGKIMAVDSTLGHVQMSLRESDISGKEKPKPADYSSLK 1322

Query: 1343 VGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1401
             G IV G++K +  YG+FI+++ + N+ GLCH S++++  +D+I  +Y  G+ VK KI+ 
Sbjct: 1323 EGQIVKGKVKNIAEYGVFISVDGSQNISGLCHKSQIADSAIDDISKLYATGDPVKAKIIS 1382

Query: 1402 VDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM 1461
            +D EK+RIS G+KSSYFK++       SE+ES++  E  G  + S++     +   D D 
Sbjct: 1383 IDLEKKRISFGLKSSYFKDEV------SEDESEDGSESEGGADLSAVKVCLGLFWIDADG 1436

Query: 1462 ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTI--------DE 1513
            ES+        + E     P +E+N      D       + G  D + +I        D 
Sbjct: 1437 ESD--------EREQEQEEPSVEMN------DAPTSEGLSTGGFDWSASILDKRGPDTDS 1482

Query: 1514 KNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAF 1570
            + + ++++++ ++++++    +E L    A R P    +FERL+   PN S +WI YM+F
Sbjct: 1483 EGDSNSEEEKHKKKKRKKAQIKEDLTGNLATREPQSVADFERLLLGDPNDSKLWIMYMSF 1542

Query: 1571 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1630
             L +++VEKAR IAERA++TI +REE+EK N+W+A  N+E+ YG   +E + + F+RA Q
Sbjct: 1543 ELQLSEVEKARGIAERAIKTIALREESEKQNVWIAMLNMESMYGT--DETLEEAFKRACQ 1600

Query: 1631 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL--KQQQEGVQ 1688
            Y + + +H  L  +Y +T + + AD+L   MIKKF    K+W+     LL  KQ  +  +
Sbjct: 1601 YNEAQGMHEKLASIYIQTSKTEKADDLFKVMIKKFSQDPKIWVNYADFLLSSKQSCDAAR 1660

Query: 1689 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1748
            A++QRA+ +LP+ +H   IS+ A LEF++G  +RGR++FE +L+ + K++DL++++LD E
Sbjct: 1661 ALLQRAMQALPQSQHKDLISKFAKLEFRSGDPERGRTLFENLLATFKKKSDLYNMFLDME 1720

Query: 1749 IRLGDVDL-----IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803
            I+ G  +      +R LF+RA++     ++ K LFKK+LE+EKS G+++  E V +KA E
Sbjct: 1721 IKYGSEEEDGKEGVRALFKRALAEKTSTRQAKALFKKWLEFEKSKGDKKSTETVTRKAKE 1780

Query: 1804 YVES 1807
            YVE+
Sbjct: 1781 YVEA 1784



 Score =  204 bits (520), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 305/1344 (22%), Positives = 571/1344 (42%), Gaps = 177/1344 (13%)

Query: 9    GMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADAL-------------DPI 45
            G  + G ++++N+ DL + LP  L G          L +  +AL             + I
Sbjct: 140  GTLVLGCISQINQTDLALSLPNNLTGFVPLTSISESLNKRVEALVRDSDDDEDEDVEEKI 199

Query: 46   LDNEIEANEDNL-LPTIFHVGQLVSCIVL---QLDDDKKEIG----KRKIWLSLRLSLLY 97
               + E++ED++ L  +F +GQ +   V+   +L + K   G    K++I LSL   +  
Sbjct: 200  GTAKSESSEDDVDLKAMFQIGQYLRAYVVSSSELANSKSPSGSKKIKKRIELSLDPVMAN 259

Query: 98   KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGI-DVKPGLLL 155
             GL+   +  G  + A V S+EDHG +++ G+ +   GFL    L +   + D K G ++
Sbjct: 260  NGLTTTELVVGCTVQASVTSVEDHGLVMNLGIGNDLKGFLSSKELGKGRSVTDAKEGQVM 319

Query: 156  QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG---------ISIDLLVPGMMVSTRVQS 206
                  +    K+V LS D +       K   G          ++D  +PG  V   +  
Sbjct: 320  LCTTIGLSSNGKIVKLSGDLEQKPSKKGKYSGGKAAWWLSSAPTVDTFLPGTGVEVLITD 379

Query: 207  ILEN----GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAV 262
            I +     G++   +     T+D FH    +   + ++ +   +K+ AR++        +
Sbjct: 380  IAKGSKAVGIVGKVMGLVDATMDFFHASG-WREKDIESKFKVGEKIKARVIATYAEPHKL 438

Query: 263  GLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 317
             L++ P++L         P + +    I + +K++ ++   GL LD+    V  P +V I
Sbjct: 439  ALSILPHVLSFTRPIENEPTTILPTSTIINSAKILNIEPKTGLSLDVGVPGV--PGFVHI 496

Query: 318  SDVAE----EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 373
            S V+     E + K    ++ GS    RI+G+  ++GL    ++    +       D+K 
Sbjct: 497  SRVSSDSRIEVLSKDSGLHQTGSVHMARIIGYNSMDGLYLVSMEQKVLDQPFLRVEDIKI 556

Query: 374  GMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--G 430
            G VVKG +  V DS   IV    G+  +    H+S+ ++  P KKF+ G E+  RVL   
Sbjct: 557  GEVVKGTINRVLDSGRVIVSLAEGITGIVDELHLSDIKLKHPEKKFREGIEVKARVLLTD 616

Query: 431  VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
               +++ +T KK +V S   I+SSY + +    + G + KI   G  V+F++ V GF P 
Sbjct: 617  PSKRKVMLTLKKAIVNSDAPIISSYEDTSSGTRSVGTLVKILPSGAVVKFFSDVCGFLPI 676

Query: 491  SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----G 545
            SE+      +P   + VGQ V   ++S  P ++++ +S    P    E   V L     G
Sbjct: 677  SEMSEAYIQDPHEHFTVGQSVNVHVLSVDPTNQKLRVS-CRDPNLFGEVHKVALAKLPPG 735

Query: 546  SLVSGVVDVVTPNAVVVYVIAKGYS--KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQL 602
             +VSG V   + + ++V +   G    +G +    L D   E +  +   ++ G + D L
Sbjct: 736  DVVSGTVVEKSADDLIVEINGLGAEGIRGVLVIGQLTDGSREKSLGVFKKLRAGQKLDGL 795

Query: 603  LVLDN--ESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
            LVL+   E  ++ LS K SL+ +A+  ++ S    ++    V G+V N    G FV F G
Sbjct: 796  LVLEKHEERRSITLSMKPSLVKAAKRGRMISKFEDVNEGERVKGWVRNTTLHGLFVGFAG 855

Query: 659  RLTGFAPRSKAVDGQRADLSKTYYV-GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 717
             + G   + + +  +   L    +V  QS+   ++ ++    R  LSL  +         
Sbjct: 856  GIVGVVYK-RDLPAEVQSLPNFGFVKNQSITGRVVYIDPSERRFRLSLNSAKS------- 907

Query: 718  MQEHFLLEEKIAMLQSSKHNGSEL---------KWVEGFIIGSVIEGKVHESNDFGVVVS 768
                   EEK++ + ++  N   L         K ++ +  G + + KV    +  + V 
Sbjct: 908  -------EEKVSAVANTAGNSERLTVNPVDARFKLIDDYTPGKLTKAKVVSIQETQLNVK 960

Query: 769  FEEHS----------DVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTV 816
              ++           + +  I   +   A  + G V+ A ++ +  A+  R + ++    
Sbjct: 961  LADNVQGRIDVSLVFETWDAIKDKKSPLALFKKGDVLDAKVIGIHDARNHRFLAIT---- 1016

Query: 817  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 876
                 +++N+     +   K    K+ G+   +  + +I   +  V  L   +    +A+
Sbjct: 1017 ----HQKSNTKTPIFELSAKPSHIKEEGIEGCITKLEDITPNSTWVTFLNNISEECAWAN 1072

Query: 877  V-------------SDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET 922
            +             SD   Q K  QK F  G ++   V+ + S  +  +L L  ++ S +
Sbjct: 1073 IMPDIRGRIRILDLSDNVAQLKTLQKSFPVGCALKCQVLRVDSEHS--KLDLSARSPSSS 1130

Query: 923  ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 982
              +  K AK       G +V   +T++   ++ ++      G I +T++ DD S    N 
Sbjct: 1131 ALTFDKLAK-------GMVVPGRVTKVTDRQVLVQISESVSGPISLTDLADDFSQANTNG 1183

Query: 983  FSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK--LLFEECDVSIGQ 1040
            +S  ++ +     I    + P+ + +    LS +PS + +S++  K   +    +V +G 
Sbjct: 1184 YSKNEVIRVCIIDI----DSPNKRVT----LSARPSRVMISDLPVKDPEIQAIVNVKVGD 1235

Query: 1041 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1100
               G+V +V  +   +TI  ++ A   I D       L+E++  F +G+ V G +++++ 
Sbjct: 1236 IRRGFVKQVSPKGLFVTIGGNVTAWTKISD--LSDGFLKEWEGLFTVGQLVKGKIMAVDS 1293

Query: 1101 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1160
                +++ LR  +  IS K      D   + + EG IV G++  I      + V    ++
Sbjct: 1294 TLGHVQMSLR--ESDISGKEKPKPAD--YSSLKEGQIVKGKVKNIAEYGVFISVDGSQNI 1349

Query: 1161 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV----LEISRTVRGT---- 1212
             G  H +++ +  + D    Y  G  DP         VK K+    LE  R   G     
Sbjct: 1350 SGLCHKSQIADSAIDDISKLYATG--DP---------VKAKIISIDLEKKRISFGLKSSY 1398

Query: 1213 FHVELSLRSSLDGMSSTNSSDLST 1236
            F  E+S   S DG  S   +DLS 
Sbjct: 1399 FKDEVSEDESEDGSESEGGADLSA 1422


>gi|417406792|gb|JAA50038.1| Putative rrna processing protein rrp5 [Desmodus rotundus]
          Length = 1876

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 400/1405 (28%), Positives = 651/1405 (46%), Gaps = 164/1405 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V E NE +LVI LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 78   ESLCEGMRMLGCVKEANELELVISLPNGLQGFVQVTEICDAYTKKLNEQVAQEEPLKDLA 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L   +K  G++ + LSL    + K LS E ++ GM+LT  V 
Sbjct: 138  SLPELFSPGMLVRCVVSSLGITEK--GRKSVKLSLNPKNVNKVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S EDHGY++  G+     FLP     +     N G ++K G  L  V+  +     VV L
Sbjct: 196  SREDHGYLMDIGVVGARAFLPLQKAQDYVRQKNKGAELKMGQYLTCVIEEVKGNGGVVRL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL++FTG VD  HL  
Sbjct: 256  SVSHSEVSTAIATEEQNWTLNNLLPGLVVKAQVQKVTPLGLTLNFLSFFTGLVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQ 288
                T     Y+ ++ V A +L V P +RAV L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGT-----YSSNQAVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLSCQHLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V       G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  IPVQGFFSKAGATFRLKDGSL---AYARLSHLSDSKSAFSPEAFKPGNTHKCRIINYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E    +  D+KPG +VKG V+ +  +G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSVIEAQYLSFHDIKPGALVKGTVLTIKPYGMLVKVGEQIRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ VG E+  RVL    ++K++ +T KKTLV+SKL  ++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHVGDEVTCRVLLCDPEAKKLMMTLKKTLVESKLPAITCYAKAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVAVLNCEPSKERML 607

Query: 527  LSFMM--KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
            LSF +   P +        +   + +G LV   V   T + + V V+        +P  H
Sbjct: 608  LSFKLLSDPKKEHAGRSQKKGKTINVGQLVDVKVLEKTKDGLEVAVLPHNIP-AFLPMSH 666

Query: 579  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 636
            L+DH+ +  ++   ++ G    ++L L     ++LLS K +L+++ +  Q P   S IHP
Sbjct: 667  LSDHVPNGPLLYHWLQAGDTLHRVLCLSQSEGHVLLSRKPALVSTVEGGQDPKSFSEIHP 726

Query: 637  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              ++ G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ 
Sbjct: 727  GMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDE 786

Query: 697  ETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGSV 752
            E  R+ LSL+ S CS  D    S +     LEE+  +     +  S L + +   I G V
Sbjct: 787  EKQRMLLSLRLSDCSLGDRATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMIPGMV 846

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAIL--DVAKAER 807
            ++ +V E    G VV F E   V G +   + +  AG  V +G   +A IL  DV K E 
Sbjct: 847  LDLEVQEVLGDGSVV-FSE-GPVPGLVLRASRYHRAGQEVGAGQKKKAVILHVDVVKLEV 904

Query: 808  LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 867
             V L    V          NR+A+K K+  E       HQ   A+V+ ++E++ V SL E
Sbjct: 905  HVSLCRDLV----------NRKAKKLKKGSE-------HQ---AVVQYLEESFAVASLVE 944

Query: 868  YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS 926
              H   ++  +  N T +F  ++   GQ V  T+       T    LL ++  +   T  
Sbjct: 945  TGHLAAFSLAAHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--FLLAVEGPAAKRTMR 1002

Query: 927  SKR-------------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 967
              R                    KKK +  +G +V   +  IKP  + +    G  G IH
Sbjct: 1003 QTRKDSETVDEDDEGDPAMVVGTKKKHALSIGDMVTGTVKSIKPTHVVVTLQNGIIGCIH 1062

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSI 1015
             + + D+   +  +  +  K+G+TVTAR+I      DMK   FL            ELS+
Sbjct: 1063 ASHILDE-VPLGTSPTAKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSV 1118

Query: 1016 KPSMLTVSEIGSKLLFEEC--------DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQ 1065
            +PS L  ++ G   L                GQ VT ++  Y V  +W  + I+  ++ +
Sbjct: 1119 RPSEL--AKDGRTALNTHSVSPSEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGR 1176

Query: 1066 LFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1125
            + +L ++     L+   + F IG+A+   V+  +  K  L L L             I  
Sbjct: 1177 IPLLLTSLSFKVLKHPDKNFRIGQALKATVVGPDSSKAFLCLSL-------------IGP 1223

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
              ++    EG++  GR+ K+     GL V      +GR+    L    VSD    Y E  
Sbjct: 1224 HKLE----EGEVAMGRVVKVTPN-EGLTVSFP---FGRIGSVSL--FHVSD---SYSE-- 1268

Query: 1186 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1245
              PL  +   + V+C VL  +  V     + LSLRS     S TN    S  +D     +
Sbjct: 1269 -TPLEDFTPQKIVRCYVLSSTDEV-----LTLSLRS-----SRTNPETKSKIIDP---EI 1314

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK---LDAKVLLSNLSDGYVESPEKEFPIGK 1302
              I D+    +++GYVK+V   G    L      L     +S+ S        +  P GK
Sbjct: 1315 NSIRDIQEGQLLRGYVKSVQPHGVLFGLGPSVVGLARHPRVSHCSPSKKALYNRHLPGGK 1374

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDS 1327
            L+  +VLSV      VE++    D+
Sbjct: 1375 LLTAKVLSVNHQKNLVELSFLPGDT 1399



 Score =  292 bits (748), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 223/333 (66%), Gaps = 17/333 (5%)

Query: 1484 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD- 1542
            +V LD   P +       QG + +++  DEK  +  KKK K+ERE E + AE+ L   + 
Sbjct: 1545 DVGLDSLTPALPP-----QGDSSDSEE-DEKPQQATKKKSKKERELEKQKAEKELSRIEE 1598

Query: 1543 -------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1595
                    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ RE
Sbjct: 1599 ALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFRE 1658

Query: 1596 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1655
            E EKLN+WVA  NLEN YG+  +E+++KVF+RA+QY +P KV L L  +Y ++E+ + A 
Sbjct: 1659 EQEKLNVWVALLNLENMYGS--QESLMKVFERAVQYNEPLKVFLQLADIYTKSEKFQEAG 1716

Query: 1656 ELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILE 1714
            EL  +M+K+F+    VW++    LL++ Q G     +QRAL  LP+ +H+  IS+ A LE
Sbjct: 1717 ELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRAMQRALECLPKKEHVDVISKFAQLE 1776

Query: 1715 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1774
            F+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+M
Sbjct: 1777 FQLGDAERAKALFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRM 1836

Query: 1775 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            KF FK+YL+YEK  G E+ ++ VK KA++YVE+
Sbjct: 1837 KFFFKRYLDYEKHHGTEKDVQAVKAKALDYVEA 1869



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 142/329 (43%), Gaps = 45/329 (13%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1148
            +AV   VL ++   + +RL LRP           +S  ++   + +  + G       S 
Sbjct: 325  QAVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLSCQHLGAVLDDIPVQG-----FFSK 379

Query: 1149 VGGLV-VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
             G    ++ G   Y R+         +SD  S +    F P      G   KC+++  S+
Sbjct: 380  AGATFRLKDGSLAYARLSH-------LSDSKSAFSPEAFKP------GNTHKCRIINYSQ 426

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                     LSLR+S+       +  LS              D+ P  +V+G V  +   
Sbjct: 427  MDELAL---LSLRTSV-----IEAQYLS------------FHDIKPGALVKGTVLTIKPY 466

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS-- 1325
            G  + +  ++   V   +L+D  +++PEK++ +G  V  RVL  +P +K++ +TLK +  
Sbjct: 467  GMLVKVGEQIRGLVPPMHLADILMKNPEKKYHVGDEVTCRVLLCDPEAKKLMMTLKKTLV 526

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
            +S+  +   I   +    G    G I RV+ YG  +   N ++ GL    ELS ++V + 
Sbjct: 527  ESKLPA---ITCYAKAKPGLQTHGFILRVKDYGCIVKFYN-DVQGLVPKHELSAEYVPDP 582

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 583  ERVFYTGQVVKVAVLNCEPSKERMLLSFK 611



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 45/251 (17%)

Query: 880  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 939
            +   K P K F  GQ++ ATV+  P SS A   L L+                    + G
Sbjct: 1186 FKVLKHPDKNFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEEG 1229

Query: 940  SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
             +    + ++ P E L + F  G  G + +  V+D  S   E    +F   + V   +++
Sbjct: 1230 EVAMGRVVKVTPNEGLTVSFPFGRIGSVSLFHVSDSYS---ETPLEDFTPQKIVRCYVLS 1286

Query: 999  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1054
             +++       +  LS++ S  T  E  SK++  E     D+  GQ + GYV  V     
Sbjct: 1287 STDE-------VLTLSLRSSR-TNPETKSKIIDPEINSIRDIQEGQLLRGYVKSVQPHGV 1338

Query: 1055 L-------LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1107
            L       + ++RH +       S   PS+   + R    GK +T  VLS+N +K L+ L
Sbjct: 1339 LFGLGPSVVGLARHPRV------SHCSPSKKALYNRHLPGGKLLTAKVLSVNHQKNLVEL 1392

Query: 1108 VLRPFQDGISD 1118
               P   G  D
Sbjct: 1393 SFLPGDTGKPD 1403



 Score = 44.3 bits (103), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             + S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 719  KSFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 777

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
              K+  VD+EK+R+ L ++ S
Sbjct: 778  VAKVTNVDEEKQRMLLSLRLS 798


>gi|349580519|dbj|GAA25679.1| K7_Rrp5p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1729

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 382/1314 (29%), Positives = 630/1314 (47%), Gaps = 193/1314 (14%)

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 623
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISDT--RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 624  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 678  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 738  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 791
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVDVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 792  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 846
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 847  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 901
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 902  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 951
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 952  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1002
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1003 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1060
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1061 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
             VDI   NM T I  GD + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1180 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1235
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1348
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1349 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
            G I+ V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK+
Sbjct: 1270 GTIRNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329

Query: 1408 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1467
            +ISL +K+S+F  +A   +++S   +    ++V   +   ++ ++     D D ES+ G 
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTTDQVEKEDEDEVMADA--GFNDSDSESDIGD 1384

Query: 1468 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1524
                               + D +P+   +G+S + G    A  +D+        +++  
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429

Query: 1525 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1575
              E ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489

Query: 1576 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
            ++EKAR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D  
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547

Query: 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1693
             +H  LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607

Query: 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1753
            AL +LP+  HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKD 1667

Query: 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
               +  LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 290/1272 (22%), Positives = 544/1272 (42%), Gaps = 188/1272 (14%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------------------LARAADAL 42
            + +  G  L G ++ + ++DL I    G+ G                     +    DA 
Sbjct: 114  KTLKNGSSLLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAA 173

Query: 43   D----PILDNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGK 84
            D     + D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K
Sbjct: 174  DEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKK 233

Query: 85   RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 144
            ++I L++  S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +    
Sbjct: 234  KRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNF 292

Query: 145  SGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 203
              +   PG +  G + +  DR+   + +++D    S    K  +  SID ++PG +V   
Sbjct: 293  EKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLL 344

Query: 204  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 263
             +SI +NG+        +G V++ HL+ TF   + K+ +     +  RI+          
Sbjct: 345  CESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAIGSSIRCRII---------- 393

Query: 264  LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------S 310
                   L N+   S  KV  + +   +++++  L     + + P+             S
Sbjct: 394  -----ACLENK---SGDKVLILSNLPHILKLEDALKSTEGLDAFPIGYTFESCSIKGRDS 445

Query: 311  TPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 365
               Y+ + D     V    V ++E      S    R+LG+  ++ +          +   
Sbjct: 446  EYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKY 501

Query: 366  FTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
               +D+  G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G++
Sbjct: 502  LRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSK 561

Query: 424  LVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHG 475
            +  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +       T   +   + +G
Sbjct: 562  VKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNG 621

Query: 476  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
            C + F+ G+ GF P SE+       P     +GQ V  +++      RRI     +   +
Sbjct: 622  CIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRI-----IATCK 676

Query: 536  VSEDDLVK----LGSLVSG----VVDVV--TPNAVVVYVIAKGYSKGTIPTEHLAD-HLE 584
            VS +   +    + ++V G     VDV+  T ++V+V +   G  +G I   HL+D  +E
Sbjct: 677  VSNEQAAQQKDTIENIVPGRTIITVDVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIE 735

Query: 585  HATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNS 638
                    ++ G E   L++  D  +    +S K SLI  A++  LP    D   ++ + 
Sbjct: 736  QNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDV 795

Query: 639  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 698
             +H Y+ +I + G FV F G+  G    S AVD +  D+SK +Y+ QSV   +L  + + 
Sbjct: 796  PMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKN 855

Query: 699  GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 758
             +  LSLK                 +E+ +          S +K  +   IGS+++ K+ 
Sbjct: 856  QKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIK 903

Query: 759  --ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKA 805
              + N   V+++   H         D Y  IT  +   +  +   VI+  I+   DV K+
Sbjct: 904  SVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KS 962

Query: 806  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 865
             + + ++ K         +    + + K+   ++ +++ + Q +   V     N+L L++
Sbjct: 963  HKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTI 1022

Query: 866  -PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETE 923
             P     I    ++D N   F +    N +SV     AL    ++  R    + AI ++ 
Sbjct: 1023 SPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSH 1077

Query: 924  TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 983
               +      S+  VG  +   + +I    + L  G    G   IT+  +D S  ++  F
Sbjct: 1078 VDIN-----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAF 1132

Query: 984  SNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQR 1041
             + KI   +   +++  + NK         ELS++ +      I S       D+  G+ 
Sbjct: 1133 ED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS-----HEDLKQGEI 1179

Query: 1042 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1101
            V G V  V+++   + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++
Sbjct: 1180 VDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDED 1237

Query: 1102 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--H 1159
             + + L LR  +     K +   +D     I  GD+  G I  +     G+ V++    +
Sbjct: 1238 SR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIRNVTD--FGVFVKLDNTVN 1289

Query: 1160 LYGRVHFTELKN 1171
            + G  H TE+ +
Sbjct: 1290 VTGLAHITEIAD 1301



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 37/330 (11%)

Query: 101  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 153
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
             LQ  V SIDR    V            + K    I++  +  G  +  RV  I E  V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104

Query: 214  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 269
            L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L   
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAF--EDKINNVIPTTVLSVDEQNKKIELSLRSA 1161

Query: 270  LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
                R+  SH  +K G+I D       D+G+ + L          A+V +S +++  +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216

Query: 328  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 384
             +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIRNV 1275

Query: 385  DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
              FG  V+    V  +  L H++E    KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|259148814|emb|CAY82059.1| Rrp5p [Saccharomyces cerevisiae EC1118]
 gi|323353170|gb|EGA85470.1| Rrp5p [Saccharomyces cerevisiae VL3]
 gi|365763937|gb|EHN05463.1| Rrp5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1729

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 382/1314 (29%), Positives = 630/1314 (47%), Gaps = 193/1314 (14%)

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 623
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 624  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 678  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 738  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 791
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 792  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 846
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 847  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 901
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 902  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 951
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 952  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1002
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1003 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1060
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1061 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
             VDI   NM T I  GD + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1180 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1235
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1348
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1349 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
            G IK V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK+
Sbjct: 1270 GTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329

Query: 1408 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1467
            +ISL +K+S+F  +A   +++S   +    +++   +   ++ ++     D D ES+ G 
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTADQLEKEDEDEVMADA--GFNDSDSESDIGD 1384

Query: 1468 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1524
                               + D +P+   +G+S + G    A  +D+        +++  
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429

Query: 1525 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1575
              E ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489

Query: 1576 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
            ++EKAR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D  
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547

Query: 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1693
             +H  LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607

Query: 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1753
            AL +LP+  HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKD 1667

Query: 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
               +  LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  178 bits (451), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 285/1267 (22%), Positives = 543/1267 (42%), Gaps = 178/1267 (14%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------------------LARAADAL 42
            + +  G  L G ++ + ++DL I    G+ G                     +    DA 
Sbjct: 114  KTLKNGSSLLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAA 173

Query: 43   D----PILDNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGK 84
            D     + D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K
Sbjct: 174  DEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKK 233

Query: 85   RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 144
            ++I L++  S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +    
Sbjct: 234  KRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNF 292

Query: 145  SGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 203
              +   PG +  G + +  DR+   + +++D    S    K  +  SID ++PG +V   
Sbjct: 293  EKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLL 344

Query: 204  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 263
             +SI +NG+        +G V++ HL+ TF   + K+ +     +  RI+          
Sbjct: 345  CESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAIGSSIRCRII---------- 393

Query: 264  LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------S 310
                   L N+   S  KV  + +   +++++  L     + + P+             S
Sbjct: 394  -----ACLENK---SGDKVLILSNLPHILKLEDALRSTEGLDAFPIGYTFESCSIKGRDS 445

Query: 311  TPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 365
               Y+ + D     V    V ++E      S    R+LG+  ++ +          +   
Sbjct: 446  EYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKY 501

Query: 366  FTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
               +D+  G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G++
Sbjct: 502  LRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSK 561

Query: 424  LVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHG 475
            +  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +       T   +   + +G
Sbjct: 562  VKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNG 621

Query: 476  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
            C + F+ G+ GF P SE+       P     +GQ V  +++      RRI  +  +   +
Sbjct: 622  CIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQ 681

Query: 536  VSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVM 589
             ++     +++V   ++++  V   T ++V+V +   G  +G I   HL+D  +E     
Sbjct: 682  AAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQ 740

Query: 590  KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGY 643
               ++ G E   L++  D  +    +S K SLI  A++  LP    D   ++ +  +H Y
Sbjct: 741  LKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAY 800

Query: 644  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703
            + +I + G FV F G+  G    S AVD +  D+SK +Y+ QSV   +L  + +  +  L
Sbjct: 801  IKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLL 860

Query: 704  SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESN 761
            SLK                 +E+ +          S +K  +   IGS+++ K+   + N
Sbjct: 861  SLKAPKVKEEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKSVKKN 908

Query: 762  DFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVD 810
               V+++   H         D Y  IT  +   +  +   VI+  I+   DV K+ + + 
Sbjct: 909  QLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLP 967

Query: 811  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYN 869
            ++ K         +    + + K+   ++ +++ + Q +   V     N+L L++ P   
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLK 1027

Query: 870  HSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSK 928
              I    ++D N   F +    N +SV     AL    ++  R    + AI ++    + 
Sbjct: 1028 ARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN- 1081

Query: 929  RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 988
                 S+  VG  +   + +I    + L  G    G   IT+  +D S  ++  F + KI
Sbjct: 1082 ----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KI 1136

Query: 989  GQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
               +   +++  + NK         ELS++ +      I S       D+  G+ V G V
Sbjct: 1137 NNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS-----HEDLKQGEIVDGIV 1184

Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
              V+++   + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++ + + 
Sbjct: 1185 KNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-IS 1241

Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRV 1164
            L LR  +     K +   +D     I  GD+  G I  +     G+ V++    ++ G  
Sbjct: 1242 LTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD--FGVFVKLDNTVNVTGLA 1294

Query: 1165 HFTELKN 1171
            H TE+ +
Sbjct: 1295 HITEIAD 1301



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 37/330 (11%)

Query: 101  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 153
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
             LQ  V SIDR    V            + K    I++  +  G  +  RV  I E  V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104

Query: 214  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 269
            L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L   
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAFED--KINNVIPTTVLSVDEQNKKIELSLRSA 1161

Query: 270  LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
                R+  SH  +K G+I D       D+G+ + L          A+V +S +++  +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216

Query: 328  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 384
             +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKNV 1275

Query: 385  DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
              FG  V+    V  +  L H++E    KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|239614080|gb|EEQ91067.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis ER-3]
 gi|327358030|gb|EGE86887.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1811

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 384/1448 (26%), Positives = 692/1448 (47%), Gaps = 206/1448 (14%)

Query: 458  ATDRLITHGWITKIEKH-GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKC 513
            A   +I    +TK+E   G +V+F +   GFA  S L    +D        Y V    + 
Sbjct: 468  AISAIIPEVKVTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVDSTHEA 527

Query: 514  RIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYV 564
            RI+     S   NL  +    +V +   ++L     G++V G ++  ++  + +  ++  
Sbjct: 528  RIVG---FSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLIVS 584

Query: 565  IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLIN 622
            +A G S G +   H++D  L+H    +   + G +   ++L ++ +   L L+ K SL+N
Sbjct: 585  LADGIS-GLVAGMHMSDTKLQHP---EKKFREGAQVSARILSVNLDKRQLRLTLKKSLLN 640

Query: 623  SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 682
            S      D + I P +   G + +I   G  V+F G + GF P S+  +    D ++ + 
Sbjct: 641  SESPAWKDYNGILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFN 700

Query: 683  VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 742
            VGQ V  + L+V+ E  ++ +S K       D S   E +    K A             
Sbjct: 701  VGQVVNVHALNVDVELRKLVVSCK-------DPSSFTEAY----KSAF------------ 737

Query: 743  WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI------- 795
              E    G ++ G V E +   +++  E+   V      H   G T  +G  +       
Sbjct: 738  --ENIHPGDIVSGTVFEKSSEDILLKLEDTGLVARLNAEHVADGQTSRNGVALARIRVGQ 795

Query: 796  ---QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 852
               +  IL++ KA RL+ ++ K           S +QA+++       +DL     V   
Sbjct: 796  KLNELLILNIQKAHRLIKVTNKP----------SLKQARQRGELPARFEDLKEGAKVTGF 845

Query: 853  VEIVKENYLVLSLPEYNHSI-GYAS---VSDYNTQKFPQKQFLNGQSVIATVMALPSSST 908
            V+ +  + L +   E+   I G+A    V D +  K P   +   Q +  +V ++     
Sbjct: 846  VKNITVDGLFV---EFLGGITGFAPKRLVDDDHVNK-PDFGYFLSQPISLSVESIEDDRQ 901

Query: 909  AGRLLLLLKAISETETSSS-----------------KRAKKKSSYDVGSLVQAEITEIKP 951
              R +L +K     + +S                  +  K       G + +A++  +K 
Sbjct: 902  --RFILRMKEQVNKQRASDGVKPANNVNQSSINPIDENIKSLDDLTFGRVTKAKVVSVKE 959

Query: 952  LELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARII----AKSNK--- 1002
             ++ ++      GRI ++EV D  D     +     FK  Q +  R++    A+S+K   
Sbjct: 960  TQINVQLAENIQGRIDVSEVFDSWDAIKDRKQPLKYFKAKQIIPVRVLGIHDARSHKFLP 1019

Query: 1003 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1060
                  K  ++ELS KPS L  +++    L +   V IG    G+V  + ++   + IS 
Sbjct: 1020 ISHRTGKYPVFELSAKPSSLQSTDLEPLSLDK---VKIGSSWVGFVNNIGDDCLWINISP 1076

Query: 1061 HLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----PFQDGI 1116
            +++ +L   D + + S + +  + F +G A+  HV  ++ +K  L L  R    P +  I
Sbjct: 1077 NVRGRLRFTDLSDDLSLVGDIAKNFPVGSALKIHVTGVDADKNRLDLSARHGGLPNRKSI 1136

Query: 1117 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1176
            SD               +G+I+ G+++++       +VQ+     G ++  ++ +     
Sbjct: 1137 SD-------------FSKGEILLGQVTRVTERQA--LVQLSNSTVGAINLIDMAD----- 1176

Query: 1177 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1236
                 D  + +P + + + + ++  +++I    +    + LS+R S           LS+
Sbjct: 1177 -----DFSKVNP-ADFHKNEVIRVCIIDIDVPNK---KILLSVRPS---------RVLSS 1218

Query: 1237 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1296
             +      +  I  L  N IV+G+V+ V + G F+ L   + A + +S+LSD Y++  + 
Sbjct: 1219 SLPIQDPEINSISQLKVNDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQN 1278

Query: 1297 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1356
            EF + +LV GR++  +  S +++++LK S      ++ I  + +L  G IV G+++ VE 
Sbjct: 1279 EFQVDQLVRGRIILADAESNKLQMSLKESVLEPNYKTPIT-IKDLKRGQIVTGKVRNVEE 1337

Query: 1357 YGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            +G FI I+ T NL GLCH +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+
Sbjct: 1338 FGAFIVIDGTANLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERISLGLKA 1397

Query: 1416 SYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIE 1475
            SYFK+       S +E +DE+ ++V   N S   ++       MD+E E G  + +  ++
Sbjct: 1398 SYFKD-------SDDESNDESADDVSEENMSESEDDGG-----MDLELESGDDISMGGVD 1445

Query: 1476 SRASV---------------PPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK 1520
               ++               P ++  L     D +   +   G  +++ +  E +++   
Sbjct: 1446 MEDAMSDASDEDVQMAGTEDPAVKGGLVTSGFDWNGNTTTGAGEGNDSGS--ESDDQTVT 1503

Query: 1521 KKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1580
            KK++  R+ EI+      L+ + P++  ++ERL+   P+SS +W+KYMAF L +++V+KA
Sbjct: 1504 KKKR--RKPEIQVDRTGDLDANGPQSIADYERLLLGEPDSSLLWLKYMAFQLELSEVDKA 1561

Query: 1581 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1640
            R IAERAL++I+I ++ EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  
Sbjct: 1562 REIAERALRSISIGQDTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHER 1619

Query: 1641 LLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLS 1697
            L  +Y ++ +N  ADEL    + KKF  S  ++L     L     + E  +A++ RA+ +
Sbjct: 1620 LTSIYIQSGKNDKADELFQATLKKKFTQSPNIYLNFATFLFDTLAEPERARALLPRAIQA 1679

Query: 1698 LPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1755
            LP H H+   S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI+ G+V+
Sbjct: 1680 LPAHTHVDITSKFGQLEFRSPNGDIERGRTIFEGLLSSFPKRVDLWNVLLDLEIKSGEVE 1739

Query: 1756 LIRGLFERAISLS--------------LPPKKMKFLFKKYLEYEKSVGE--EERIEYVKQ 1799
             +R LFER + L               L  K+ KF FKK+L +E+  G+  E+ ++ VK 
Sbjct: 1740 QVRRLFERVLGLGHGIAADGTKTVSKKLKDKQAKFFFKKWLTFEEKAGDGNEKMVDEVKA 1799

Query: 1800 KAMEYVES 1807
            +A EYV++
Sbjct: 1800 RAAEYVKA 1807



 Score =  174 bits (441), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 183/758 (24%), Positives = 321/758 (42%), Gaps = 54/758 (7%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNLLP- 59
           + I  G K+ G V+ +N  D+ + LP  L G   +   +  L   ++N +++N++     
Sbjct: 156 KRIVIGSKVLGQVSSINAHDIGLSLPNNLTGYIPITAVSRTLQQKIENLLKSNQEENDNS 215

Query: 60  -------------TIFHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLE 103
                        + F +GQ +   VL  + +    K  GK+ I LS+       GLS  
Sbjct: 216 DDDEEEEEDLDLNSYFKLGQYLRASVLSTETEVNHGKTKGKKHIRLSVDPREANSGLSKS 275

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI-DVKPGLLLQGVVR 160
            +     + A V S+EDHG ++  GL      GF+    +  +  +  +K G +   VV 
Sbjct: 276 DLVVNATVQASVLSVEDHGLVMDLGLQDGQTKGFMSSKEIPHDLEVSQIKEGSVFLCVVT 335

Query: 161 SIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
             +    VV LS++  T              +I+  +PG      +  +   G+    + 
Sbjct: 336 GHNADGSVVKLSANLPTAGSIKKSHFLTSAPTINSFLPGTAAEILLTEVTSTGMAGKIMG 395

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL---------TLNPY 269
                VD+     T    +    Y+   K+  R++   PT   + L            P 
Sbjct: 396 MLNAVVDLVQSGTTTGKEDITTKYHVGAKIKGRLICTFPTVEPMKLGFSILDHVVKFTPT 455

Query: 270 LLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
           +L  +        +  I  + KV +V+ GLG+ +              +SD   + +   
Sbjct: 456 VLEQKPSSEDTPAISAIIPEVKVTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISAT 515

Query: 329 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAV 384
           +  YK  S    RI+GF  L+ L    L+    +       DV  G VV+GK+    I  
Sbjct: 516 QGPYKVDSTHEARIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGT 575

Query: 385 DSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHK 441
           D   G IV    G+  L    HMS+ ++  P KKF+ GA++  R+L V    +++ +T K
Sbjct: 576 DGISGLIVSLADGISGLVAGMHMSDTKLQHPEKKFREGAQVSARILSVNLDKRQLRLTLK 635

Query: 442 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           K+L+ S+      Y        + G I  I+ HG  V+FY  V+GF P SE+      +P
Sbjct: 636 KSLLNSESPAWKDYNGILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDP 695

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVT 556
           +  ++VGQVV    ++     R++ +S    P+  +E      + +  G +VSG V   +
Sbjct: 696 AQHFNVGQVVNVHALNVDVELRKLVVS-CKDPSSFTEAYKSAFENIHPGDIVSGTVFEKS 754

Query: 557 PNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL- 614
              +++ +   G     +  EH+AD       V  + I+ G + ++LL+L+ + ++ L+ 
Sbjct: 755 SEDILLKLEDTGLV-ARLNAEHVADGQTSRNGVALARIRVGQKLNELLILNIQKAHRLIK 813

Query: 615 -SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
            + K SL  + Q  +LP+    +   + V G+V NI   G FV FLG +TGFAP+    D
Sbjct: 814 VTNKPSLKQARQRGELPARFEDLKEGAKVTGFVKNITVDGLFVEFLGGITGFAPKRLVDD 873

Query: 672 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
                    Y++ Q +  ++  +  +  R  L +K+  
Sbjct: 874 DHVNKPDFGYFLSQPISLSVESIEDDRQRFILRMKEQV 911



 Score = 42.0 bits (97), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 153/369 (41%), Gaps = 31/369 (8%)

Query: 6    ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHV 64
            +  G    G V  + +  L I +   +RG  R  D  D + L  +I  N        F V
Sbjct: 1052 VKIGSSWVGFVNNIGDDCLWINISPNVRGRLRFTDLSDDLSLVGDIAKN--------FPV 1103

Query: 65   GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
            G  +   V  +D DK      ++ LS R   L    S+    +G +L   V  + +   +
Sbjct: 1104 GSALKIHVTGVDADKN-----RLDLSARHGGLPNRKSISDFSKGEILLGQVTRVTERQAL 1158

Query: 125  LHFGLPSFTGFLPRNNLAEN----SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV-- 178
            +     S  G +   ++A++    +  D     +++  +  ID   K + LS  P  V  
Sbjct: 1159 VQLS-NSTVGAINLIDMADDFSKVNPADFHKNEVIRVCIIDIDVPNKKILLSVRPSRVLS 1217

Query: 179  SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 238
            S    +D +  SI  L    +V   V+ +  NG+ ++     T  + I  L +++    W
Sbjct: 1218 SSLPIQDPEINSISQLKVNDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSY-LKEW 1276

Query: 239  KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-NRAPP---SHVKVGDIYDQSKVVRV 294
            +N++   + V  RI+  D  S  + ++L   +L  N   P     +K G I    KV  V
Sbjct: 1277 QNEFQVDQLVRGRIILADAESNKLQMSLKESVLEPNYKTPITIKDLKRGQIV-TGKVRNV 1335

Query: 295  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLAT 353
            +   G  + I  T  +       +++AE +V    K +++G  V+ +I+    + E ++ 
Sbjct: 1336 EE-FGAFIVIDGT-ANLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERISL 1393

Query: 354  GILKASAFE 362
            G LKAS F+
Sbjct: 1394 G-LKASYFK 1401


>gi|71002516|ref|XP_755939.1| rRNA biogenesis protein RRP5 [Aspergillus fumigatus Af293]
 gi|66853577|gb|EAL93901.1| rRNA biogenesis protein RRP5, putative [Aspergillus fumigatus Af293]
          Length = 1822

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 368/1347 (27%), Positives = 661/1347 (49%), Gaps = 163/1347 (12%)

Query: 542  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGTVVKGKIEKLLIGPAGVDGLIVTLADGIT-GLVPSMHFADTALQFPEKK--FREGM 610

Query: 598  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
                ++L ++ +   + L+ K SL+NS   +  D   I P S   G + NI   G  V+F
Sbjct: 611  TITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQF 670

Query: 657  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVSCKDP------ST 724

Query: 717  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHES----NDFGVVVSFEE 771
            F + +    EKI                 G  + G+V E  V +     ++FG++   + 
Sbjct: 725  FTETYRKAFEKIQ---------------PGLRVTGTVFEKSVDDVLLKLDEFGLIARLDL 769

Query: 772  HSDVYGFITHHQLAGATVESGSVIQAA-ILDVAKAERLVDLSLKTVFIDRFREANSNRQA 830
               V G  +    A + +  G  +    +LD+ +A RL+ +S +           S ++A
Sbjct: 770  AHVVDGPESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKA 819

Query: 831  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQ 887
             K+       +D+     V   V  +  + L +        IG      ++D N  K P 
Sbjct: 820  AKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEF--LGGIIGLVPKRLLADENVNK-PD 876

Query: 888  KQFLNGQSVIATVMAL------------PSSSTAG----RLLLLLKAISETETSSSKRAK 931
               +  Q V ATV ++            PS +T+            +  E   +  +  K
Sbjct: 877  YDMVKSQLVTATVHSIDRDFQRFILSMKPSEATSAGPKKPAPKPTPSNDEVTNAVDESIK 936

Query: 932  KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIG 989
              S +  G  V  ++  +K  ++ ++      GRI ++EV D   ++ +       F+  
Sbjct: 937  SMSDFTFGRTVNCKVVSVKATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFRPK 996

Query: 990  QTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1040
            Q+++ARI+    A+S+K  P   +S    ++ELS+KPS L  +   S L  E+  V +G 
Sbjct: 997  QSISARILGIHDARSHKFLPISHRSGKFPVFELSVKPSFLQAAN-PSPLNLEQ--VQVGS 1053

Query: 1041 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1100
               G+V  V ++   + +S +++ +L  +D++ + S   + ++ F IG A+  HV +++ 
Sbjct: 1054 TWVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAAVDT 1113

Query: 1101 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1160
            EK  L L  +     +S + + +           G I+ GR++K+      +++Q+   +
Sbjct: 1114 EKGRLDLTAKQRSSKLSFEDISV-----------GMILPGRVTKVTEK--QVIMQLSDTV 1160

Query: 1161 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1220
             G V+  +L +          D  + +P + Y +   ++  V+ + +  +    + LSLR
Sbjct: 1161 VGAVNLIDLAD----------DYSKANP-TVYHKNDVLRACVVGVDKANK---KISLSLR 1206

Query: 1221 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1280
             S           LS+ +      +  ++ L  N +V+G+VK V   G F+ L   + A 
Sbjct: 1207 PS---------KVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAY 1257

Query: 1281 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1340
            V +S+LSD Y++  +  F + +LV GRV  V+P   R++++LK S      ++ I  + +
Sbjct: 1258 VRVSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPIT-MHD 1316

Query: 1341 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1399
            L VG  V G++++VE +G FI I+ + N+ GLCH SE+++  VD+  T+Y  G+ VK KI
Sbjct: 1317 LKVGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKI 1376

Query: 1400 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE---AIEEVGSYNRSSLLENSSVAV 1456
            +K+D+E  +IS  +K+S+FK+  +  +  S+EE D    +++ +G  +     ++     
Sbjct: 1377 IKIDRESGKISFSLKASHFKDHDEEDESGSDEEGDSNGVSLDGMGGVDVEGSDDSEDDDD 1436

Query: 1457 Q-------DMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1509
                    D++ +SE  G      +E  ++    +  L     D    +  ++    ++ 
Sbjct: 1437 DDESMGGVDLEEDSESDGGESDEDVEMTSAPVKRDGGLGATGFDWSGNVKDDEDEAMQSD 1496

Query: 1510 TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMA 1569
            + DE N+R  KKK ++   Q  R  E   L+ + P++  ++ERL+   P+SS +W+KYMA
Sbjct: 1497 SDDEDNSRKKKKKSRKPEIQVDRTGE---LDANGPQSVADYERLLLGEPDSSLLWLKYMA 1553

Query: 1570 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1629
            F L + +VEKAR IAERAL+TI+I ++ EKLNIWVA  NLEN YGN  ++++ +VF+RA 
Sbjct: 1554 FQLELGEVEKAREIAERALRTISIGQDTEKLNIWVALLNLENTYGN--DDSLDEVFKRAC 1611

Query: 1630 QYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EG 1686
            QY D ++++  +  +Y ++ +N+ ADEL    + KK  ++ K +L     L       + 
Sbjct: 1612 QYNDTQEIYDRMTSIYIQSGKNEKADELFQTALKKKISNTPKFFLNYASFLFDSMAAPDR 1671

Query: 1687 VQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIY 1744
             ++++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ 
Sbjct: 1672 ARSLLPRALQSLPSHTHVELTSKFGQLEFRSPNGDVERGRTVFEGLLSSFPKRVDLWNVL 1731

Query: 1745 LDQEIRLGDVDLIRGLFERAISL-------------------SLPPKKMKFLFKKYLEYE 1785
            LD EI+ GD + +R LFER + +                    L PK+ KF FKK+L +E
Sbjct: 1732 LDLEIKNGDAEQVRRLFERVLGIRDAKNGAAAAVATPTDASKKLRPKQAKFFFKKWLSFE 1791

Query: 1786 KSV-----GEEERIEYVKQKAMEYVES 1807
            + +     G+E+ +E +K +A +YV+S
Sbjct: 1792 EKLAAANGGDEKMVEEIKARAADYVKS 1818



 Score =  173 bits (439), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 193/771 (25%), Positives = 333/771 (43%), Gaps = 72/771 (9%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN-EDNLLPTI- 61
           + I  G  + G V+ +N  D+ + LP  L G      A+   LD +IE    DN      
Sbjct: 152 KRIVPGSMVLGQVSSINAHDIGLSLPNNLTGYVPLT-AVSKKLDEKIEKILNDNDNEDSD 210

Query: 62  ----------------FHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSL 102
                           F++GQ +   V+ +     D     K++I LS+       GLS 
Sbjct: 211 AEEEDGDDDSLDLTDYFYLGQYLRASVVSVGSNAADAPSKNKKRIELSVDPRQANAGLSK 270

Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVV 159
             ++    + A V S+EDHG ++  G+      GF+ +  +   +    +K G +   +V
Sbjct: 271 SDLEVNTAIQASVVSVEDHGLVMDLGIEGADVKGFMSKKEIDPKTDYSSIKEGSVFLCMV 330

Query: 160 RSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
              +    VV LS++  +              +I+  +PG      +  +  +G++   +
Sbjct: 331 TGQNANGSVVKLSANLQSAGSIKKSHYLSTASTINSFLPGTAAEILLTEVSSSGLIGKIM 390

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL---- 271
                TVD+          +    +    K+  RI+   P S    VG ++  ++L    
Sbjct: 391 GMLDATVDLVQSGGNSGKDDLTKKFQMGAKIKGRIVCTFPASEPFKVGFSILDHVLKFAT 450

Query: 272 HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
               P +      +  I  ++KVV VD G+G+ + + ST      +V +S +A+ +V  +
Sbjct: 451 EGHGPGTSEDAPAISAIIPETKVVMVDPGMGVYVQMGST--KHVGFVHVSRLADGKVEHI 508

Query: 329 EKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV---- 381
             +   ++  S    R++G+   +GL     +    E       DV  G VVKGK+    
Sbjct: 509 APEHGPFRIDSVHEARVVGYSAFDGLYLLSFERKVIEQPFLRMEDVTVGTVVKGKIEKLL 568

Query: 382 ---IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 436
                VD  G IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I
Sbjct: 569 IGPAGVD--GLIVTLADGITGLVPSMHFADTALQFPEKKFREGMTITARILSVNLQKRQI 626

Query: 437 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 496
            +T KK+L+ S+ AI   Y +      + G I  I+ HG  V+FY  V+GF P SE+   
Sbjct: 627 RLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEMSEA 686

Query: 497 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGV 551
              +PS  +  GQVV    +S  PA  ++ +S    P+  +E      + ++ G  V+G 
Sbjct: 687 YIKDPSQHFRQGQVVNVHALSVDPALGKLAVS-CKDPSTFTETYRKAFEKIQPGLRVTGT 745

Query: 552 VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESS 610
           V   + + V++ +   G     +   H+ D  E   +   S I+ G + + LLVLD + +
Sbjct: 746 VFEKSVDDVLLKLDEFGLI-ARLDLAHVVDGPESKQISALSKIRVGQKLNDLLVLDIQRA 804

Query: 611 NLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
             L+  SA+ SL  +A+Q  LP+    I   + V G+V NI   G F+ FLG + G  P+
Sbjct: 805 RRLIKVSARASLKKAAKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEFLGGIIGLVPK 864

Query: 667 ----SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
                + V+    D+ K+  V  +V S    ++ +  R  LS+K S  +S 
Sbjct: 865 RLLADENVNKPDYDMVKSQLVTATVHS----IDRDFQRFILSMKPSEATSA 911



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 142/315 (45%), Gaps = 39/315 (12%)

Query: 416  KKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 473
            K F +G+ L   V  V ++  R+ +T K+    SKL    S+ + +  +I  G +TK+ +
Sbjct: 1096 KHFPIGSALKVHVAAVDTEKGRLDLTAKQR--SSKL----SFEDISVGMILPGRVTKVTE 1149

Query: 474  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 533
                ++  + V G     +L  D      ++YH   V++  ++    A+++I+LS  ++P
Sbjct: 1150 KQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANKKISLS--LRP 1207

Query: 534  TRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLA 580
            ++V    L            +K+  +V G V  V  + + V +   G+     +    L+
Sbjct: 1208 SKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTL---GHDVTAYVRVSDLS 1264

Query: 581  DHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 635
            D     + +K   K  ++ DQL+     V+D E   L +S K S+++   + P     + 
Sbjct: 1265 D-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLK 1318

Query: 636  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
                V G V  + E G F+       ++G   RS+  D +  D    Y  G  V++ I+ 
Sbjct: 1319 VGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKIIK 1378

Query: 694  VNSETGRITLSLKQS 708
            ++ E+G+I+ SLK S
Sbjct: 1379 IDRESGKISFSLKAS 1393



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 155/349 (44%), Gaps = 50/349 (14%)

Query: 89   LSLRLSLLYKG----LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 144
            LS++ S L       L+LE VQ G     +V ++ D    ++   P+  G L   + +++
Sbjct: 1029 LSVKPSFLQAANPSPLNLEQVQVGSTWVGFVNNVADDCLWINLS-PNVRGRLRFMDASDD 1087

Query: 145  SGI--DVKP----GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 198
              +  DV+     G  L+  V ++D  +  + L++   + SK   +D   IS+ +++PG 
Sbjct: 1088 LSLFADVEKHFPIGSALKVHVAAVDTEKGRLDLTAKQRS-SKLSFED---ISVGMILPG- 1142

Query: 199  MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILF 254
                RV  + E  V++       G V++  L + +    PT   KND      + A ++ 
Sbjct: 1143 ----RVTKVTEKQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDV-----LRACVVG 1193

Query: 255  VDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGLGLLLDI 304
            VD  ++ + L+L P  + + + P           +KV D+  +  V RV D GL + L  
Sbjct: 1194 VDKANKKISLSLRPSKVLSSSLPVQDPEITSMKQLKVNDVV-RGFVKRVADSGLFVTLGH 1252

Query: 305  PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE-- 362
              T     AYV +SD+++  +++ +  ++    V+ R+      +G     LK S  +  
Sbjct: 1253 DVT-----AYVRVSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPE 1307

Query: 363  -GLVFTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSE 408
                 T  D+K G  V GKV  V+ FGA  ++     +  LC    M++
Sbjct: 1308 YKAPITMHDLKVGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMAD 1356



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 159/371 (42%), Gaps = 33/371 (8%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIF 62
            + +  G    G V  V +  L I L   +RG  R  DA D + L  ++E +        F
Sbjct: 1047 EQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKH--------F 1098

Query: 63   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
             +G  +   V  +D +K   G+  +    R S     LS E +  GM+L   V  + +  
Sbjct: 1099 PIGSALKVHVAAVDTEK---GRLDLTAKQRSS----KLSFEDISVGMILPGRVTKVTEKQ 1151

Query: 123  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDT 177
             I+     +  G +   +LA++      P +     +L+  V  +D+  K + LS  P  
Sbjct: 1152 VIMQLS-DTVVGAVNLIDLADDYS-KANPTVYHKNDVLRACVVGVDKANKKISLSLRPSK 1209

Query: 178  V--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
            V  S    +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L +++  
Sbjct: 1210 VLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDSY-L 1268

Query: 236  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKV 291
              WK+ +   + V  R+  VDP    + ++L   +L    +AP +   +KVG  +   KV
Sbjct: 1269 KEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQ-FVTGKV 1327

Query: 292  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 351
             +V+     ++   S  +S   +   S++A++ V      Y+EG  V+ +I+      G 
Sbjct: 1328 RKVEEFGAFIVIDRSANISGLCHR--SEMADKRVDDARTLYEEGDLVKAKIIKIDRESGK 1385

Query: 352  ATGILKASAFE 362
             +  LKAS F+
Sbjct: 1386 ISFSLKASHFK 1396


>gi|151945933|gb|EDN64165.1| U3 snoRNP protein [Saccharomyces cerevisiae YJM789]
          Length = 1729

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 381/1314 (28%), Positives = 630/1314 (47%), Gaps = 193/1314 (14%)

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 623
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISDT--RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 624  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 678  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 738  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 791
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVDVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 792  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 846
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 847  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 901
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 902  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 951
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 952  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1002
             +L +      HGR+ I EV D    + +     S++K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSSYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1003 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1060
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1061 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
             VDI   NM T I  GD + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1180 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1235
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1348
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1349 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
            G IK V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK+
Sbjct: 1270 GTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329

Query: 1408 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1467
            +ISL +K+S+F  +A   +++S   +    +++   +   ++ ++     D D ES+ G 
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTTDQLEKEDEDEVMADA--GFNDSDSESDIGD 1384

Query: 1468 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1524
                               + D +P+   +G+S + G    A  +D+        +++  
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429

Query: 1525 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1575
              E ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489

Query: 1576 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
            ++EKAR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D  
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547

Query: 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1693
             +H  LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607

Query: 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1753
            AL +LP+  HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKD 1667

Query: 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
               +  LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  181 bits (458), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 290/1272 (22%), Positives = 545/1272 (42%), Gaps = 188/1272 (14%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------------------LARAADAL 42
            + +  G  L G ++ + ++DL I    G+ G                     +    DA 
Sbjct: 114  KTLKNGSSLLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAA 173

Query: 43   D----PILDNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGK 84
            D     + D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K
Sbjct: 174  DEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKK 233

Query: 85   RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 144
            ++I L++  S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +    
Sbjct: 234  KRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNF 292

Query: 145  SGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 203
              +   PG +  G + +  DR+   + +++D    S    K  +  SID ++PG +V   
Sbjct: 293  EKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLL 344

Query: 204  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 263
             +SI +NG+        +G V++ HL+ TF   + K+ +     +  RI+          
Sbjct: 345  CESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAIGSSIRCRII---------- 393

Query: 264  LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------S 310
                   L N+   S  KV  + +   +++++  L     + + P+             S
Sbjct: 394  -----ACLENK---SGDKVLILSNLPHILKLEDALKSTEGLDAFPIGYTFESCSIKGRDS 445

Query: 311  TPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 365
               Y+ + D     V    V ++E      S    R+LG+  ++ +          +   
Sbjct: 446  EYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKY 501

Query: 366  FTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
               +D+  G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G++
Sbjct: 502  LRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSK 561

Query: 424  LVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHG 475
            +  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +       T   +   + +G
Sbjct: 562  VKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNG 621

Query: 476  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
            C + F+ G+ GF P SE+       P     +GQ V  +++      RRI     +   +
Sbjct: 622  CIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRI-----IATCK 676

Query: 536  VSEDDLVK----LGSLVSG----VVDVV--TPNAVVVYVIAKGYSKGTIPTEHLAD-HLE 584
            VS +   +    + ++V G     VDV+  T ++V+V +   G  +G I   HL+D  +E
Sbjct: 677  VSNEQAAQQKDTIENIVPGRTIITVDVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIE 735

Query: 585  HATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNS 638
                    ++ G E   L++  D  +    +S K SLI  A++  LP    D   ++ + 
Sbjct: 736  QNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDV 795

Query: 639  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 698
             +H Y+ +I + G FV F G+  G    S AVD +  D+SK +Y+ QSV   +L  + + 
Sbjct: 796  PMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKN 855

Query: 699  GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 758
             +  LSLK                 +E+ +          S +K  +   IGS+++ K+ 
Sbjct: 856  QKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIK 903

Query: 759  --ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKA 805
              + N   V+++   H         D Y  IT  +   ++ +   VI+  I+   DV K+
Sbjct: 904  SVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSSYKKDDVIKVKIIGNHDV-KS 962

Query: 806  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 865
             + + ++ K         +    + + K+   ++ +++ + Q +   V     N+L L++
Sbjct: 963  HKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTI 1022

Query: 866  -PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETE 923
             P     I    ++D N   F +    N +SV     AL    ++  R    + AI ++ 
Sbjct: 1023 SPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSH 1077

Query: 924  TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 983
               +      S+  VG  +   + +I    + L  G    G   IT+  +D S  ++  F
Sbjct: 1078 VDIN-----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAF 1132

Query: 984  SNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQR 1041
             + KI   +   +++  + NK         ELS++ +      I S       D+  G+ 
Sbjct: 1133 ED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS-----HEDLKQGEI 1179

Query: 1042 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1101
            V G V  V+++   + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++
Sbjct: 1180 VDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDED 1237

Query: 1102 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--H 1159
             + + L LR  +     K +   +D     I  GD+  G I  +     G+ V++    +
Sbjct: 1238 SR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD--FGVFVKLDNTVN 1289

Query: 1160 LYGRVHFTELKN 1171
            + G  H TE+ +
Sbjct: 1290 VTGLAHITEIAD 1301



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 37/330 (11%)

Query: 101  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 153
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
             LQ  V SIDR    V            + K    I++  +  G  +  RV  I E  V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104

Query: 214  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 269
            L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L   
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAF--EDKINNVIPTTVLSVDEQNKKIELSLRSA 1161

Query: 270  LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
                R+  SH  +K G+I D       D+G+ + L          A+V +S +++  +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216

Query: 328  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 384
             +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKNV 1275

Query: 385  DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
              FG  V+    V  +  L H++E    KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|6323885|ref|NP_013956.1| Rrp5p [Saccharomyces cerevisiae S288c]
 gi|2498865|sp|Q05022.1|RRP5_YEAST RecName: Full=rRNA biogenesis protein RRP5; AltName: Full=Ribosomal
            RNA-processing protein 5; AltName: Full=U3 small
            nucleolar RNA-associated protein RRP5; Short=U3
            snoRNA-associated protein RRP5
 gi|887610|emb|CAA90200.1| Rrp5p [Saccharomyces cerevisiae]
 gi|285814233|tpg|DAA10128.1| TPA: Rrp5p [Saccharomyces cerevisiae S288c]
 gi|392297399|gb|EIW08499.1| Rrp5p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1729

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 380/1314 (28%), Positives = 630/1314 (47%), Gaps = 193/1314 (14%)

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 623
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 624  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
              +LP      +A +I   N      +      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 678  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 738  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 791
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 792  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 846
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 847  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 901
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 902  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 951
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 952  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1002
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1003 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1060
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1061 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
             VDI   NM T I  GD + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1180 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1235
             +     E   D ++       +   VL +    +    +ELSLR +     S  S    
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRPATAKTRSIKSH--- 1171

Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1348
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1349 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
            G IK V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK+
Sbjct: 1270 GTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329

Query: 1408 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1467
            +ISL +K+S+F  +A   +++S   +   ++++   +   ++ ++     D D ES+ G 
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTVDQLEKEDEDEVMADA--GFNDSDSESDIGD 1384

Query: 1468 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1524
                               + D +P+   +G+S + G    A  +D+        +++  
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429

Query: 1525 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1575
              E ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489

Query: 1576 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
            ++EKAR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D  
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547

Query: 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1693
             +H  LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607

Query: 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1753
            AL +LP+  HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKD 1667

Query: 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
               +  LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 287/1267 (22%), Positives = 544/1267 (42%), Gaps = 178/1267 (14%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------------------LARAADAL 42
            + +  G  L G ++ + ++DL I    G+ G                     +    DA 
Sbjct: 114  KTLKNGSSLLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAA 173

Query: 43   D----PILDNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGK 84
            D     + D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K
Sbjct: 174  DEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKK 233

Query: 85   RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 144
            ++I L++  S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +    
Sbjct: 234  KRIELTIEPSSVNIYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNF 292

Query: 145  SGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 203
              +   PG +  G + +  DR+   + +++D    S    K  +  SID ++PG +V   
Sbjct: 293  EKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLL 344

Query: 204  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 263
             +SI +NG+        +G V++ HL+ TF   + K+ +     +  RI+          
Sbjct: 345  CESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFVIGSSIRCRII---------- 393

Query: 264  LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------S 310
                   L N+   S  KV  + +   +++++  L     + + P+             S
Sbjct: 394  -----ACLENK---SGDKVLILSNLPHILKLEDALRSTEGLDAFPIGYTFESCSIKGRDS 445

Query: 311  TPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 365
               Y+ + D     V    V ++E      S    R+LG+  ++ +          +   
Sbjct: 446  EYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKY 501

Query: 366  FTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
               +D+  G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G++
Sbjct: 502  LRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSK 561

Query: 424  LVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHG 475
            +  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +       T   I   + +G
Sbjct: 562  VKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATIQVFKPNG 621

Query: 476  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
            C + F+ G+ GF P SE+       P     +GQ V  +++      RRI  +  +   +
Sbjct: 622  CIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQ 681

Query: 536  VSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVM 589
             ++     +++V   ++++  V   T ++V+V +   G  +G I   HL+D  +E     
Sbjct: 682  AAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQ 740

Query: 590  KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGY 643
               ++ G E   L++  D  +    +S K SLI  A++  LP    D   ++ +  +H Y
Sbjct: 741  LKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAY 800

Query: 644  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703
            + +I + G FV F G+  G    S AVD +  D+SK +Y+ QSV   +L  + +  +  L
Sbjct: 801  IKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLL 860

Query: 704  SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESN 761
            SLK                 +E+ +          S +K  +   IGS+++ K+   + N
Sbjct: 861  SLKAPKVKEEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKSVKKN 908

Query: 762  DFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVD 810
               V+++   H         D Y  IT  +   +  +   VI+  I+   DV K+ + + 
Sbjct: 909  QLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLP 967

Query: 811  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYN 869
            ++ K         +    + + K+   ++ +++ + Q +   V     N+L L++ P   
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLK 1027

Query: 870  HSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSK 928
              I    ++D N   F +    N +SV     AL    ++  R    + AI ++    + 
Sbjct: 1028 ARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN- 1081

Query: 929  RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 988
                 S+  VG  +   + +I    + L  G    G   IT+  +D S  ++  F + KI
Sbjct: 1082 ----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KI 1136

Query: 989  GQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
               +   +++  + NK         ELS++P+      I S       D+  G+ V G V
Sbjct: 1137 NNVIPTTVLSVDEQNKK-------IELSLRPATAKTRSIKS-----HEDLKQGEIVDGIV 1184

Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
              V+++   + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++ + + 
Sbjct: 1185 KNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-IS 1241

Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRV 1164
            L LR  +     K +   +D     I  GD+  G I  +     G+ V++    ++ G  
Sbjct: 1242 LTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKSVTD--FGVFVKLDNTVNVTGLA 1294

Query: 1165 HFTELKN 1171
            H TE+ +
Sbjct: 1295 HITEIAD 1301



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 13/212 (6%)

Query: 507  VGQVVKCRIMSSIPASRRINLSFMMKPTRV----SEDDLVKLGSLVSGVVDVVTPNAVVV 562
            +  V+   ++S    +++I LS      +     S +DL K G +V G+V  V    + V
Sbjct: 1136 INNVIPTTVLSVDEQNKKIELSLRPATAKTRSIKSHEDL-KQGEIVDGIVKNVNDKGIFV 1194

Query: 563  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP-GYEFDQLLVLDNESSNLLLSAKYSLI 621
            Y+  K   +  +P   L+D   +    K   KP  Y   +++  D E S + L+ + S I
Sbjct: 1195 YLSRK--VEAFVPVSKLSDS--YLKEWKKFYKPMQYVLGKVVTCD-EDSRISLTLRESEI 1249

Query: 622  NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSK 679
            N   ++    S I    V  G + ++ + G FV+      +TG A  ++  D +  DLS 
Sbjct: 1250 NGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSA 1309

Query: 680  TYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
             + VG  V++ +L  N E  +I+LSLK S  S
Sbjct: 1310 LFGVGDRVKAIVLKTNPEKKQISLSLKASHFS 1341



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 136/330 (41%), Gaps = 37/330 (11%)

Query: 101  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 153
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
             LQ  V SIDR    V            + K    I++  +  G  +  RV  I E  V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104

Query: 214  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 269
            L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L P 
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAF--EDKINNVIPTTVLSVDEQNKKIELSLRPA 1161

Query: 270  LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
                R+  SH  +K G+I D       D+G+ + L          A+V +S +++  +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216

Query: 328  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 384
             +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G + +V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSV 1275

Query: 385  DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
              FG  V+    V  +  L H++E    KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|156058222|ref|XP_001595034.1| hypothetical protein SS1G_03122 [Sclerotinia sclerotiorum 1980]
 gi|154700910|gb|EDO00649.1| hypothetical protein SS1G_03122 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1789

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 451/1737 (25%), Positives = 774/1737 (44%), Gaps = 211/1737 (12%)

Query: 186  LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI------------------- 226
            ++G+S   LVPG +V  +V  I    + LS     TG V I                   
Sbjct: 140  IEGLSYKRLVPGSLVLGQVSQINATDIALSLPNNLTGYVPITSISDKATERIEAIAAAEE 199

Query: 227  -----------FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA 275
                         L+  F    +   Y      +     +    R + L+L P   +N A
Sbjct: 200  DDVEDELEVQDIDLKKMFSMGQYLRAYVVSTSDDTNTATLGKGKRRIELSLRPQHANN-A 258

Query: 276  PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 335
              S   + +    + V  V+   GL+++I         ++   D+  E V       +EG
Sbjct: 259  VTSQNLIANTTLMASVTSVEDH-GLIMNIGLEDSGIRGFMGAKDIGHEVVLA---DVQEG 314

Query: 336  SCVRVRILGFRH--------LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 387
            +     + G            +    G LK S +     T     PG  V+  ++ V S 
Sbjct: 315  AVFLCMVTGLSSNGKTVKLCADTQKIGNLKKSNYLTDAPTVDAFLPGTAVEILIVDVSSR 374

Query: 388  GAIVQFPGGVKALCPLPHMS------EFEIVKPGKKFKVGAELVFRVLGV----KSKRIT 437
            G   +  G V     L H        E E     KKFK+GA++  RV+        +++ 
Sbjct: 375  GVTGKVMGMVDVTADLMHSGTGVMNQELE-----KKFKIGAKVRGRVICTFPNSDPQKLG 429

Query: 438  VT---HKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKH-GCFVRF-YNGVQGF 487
            V+   H  +L   +     +  +  D L     I    I K+E   G FV     G+ GF
Sbjct: 430  VSLLDHVASLSPQQAGKPGNKVDPLDALPLSAIIEEVTIKKVESGVGLFVDVGVKGIPGF 489

Query: 488  APRSELG---LDPGCEPSSMYHVGQVVKCRIMS--SIPASRRINLS-FMMKPTRVSEDDL 541
               S +    ++   E +  Y VG V + R+++  S+     ++L   +++   +  +DL
Sbjct: 490  VHISRVKDGKIETLEETTGPYKVGSVHRGRVLAYNSLDGVYLVSLEKSVLEQAYLRIEDL 549

Query: 542  VKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 596
             K+G +V G V+ +  NA     ++  +A+  S G +P  HLAD  L H    +   K G
Sbjct: 550  -KVGEVVKGKVEKLIVNANGFGGLLVNLAENIS-GLVPETHLADVQLLHP---EKKFKEG 604

Query: 597  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
                 ++L  D     + L+ K +L+NS     +    I       G + NI+ TG  V+
Sbjct: 605  MSVTARVLSTDPGKRQIRLTLKKTLVNSESPAFTSYDGIIVGMQSPGTIVNIMNTGAVVQ 664

Query: 656  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
            F G + GF P S+  +    D S+ + VGQ V  ++L V+ E+ ++T+S K         
Sbjct: 665  FYGNIRGFLPVSEMSEAYIQDPSQHFKVGQVVNVHVLKVDPESQKLTVSCKDPSVFGLAQ 724

Query: 716  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
                ++  + E ++ L   K N      ++G  + + +          G +    E+   
Sbjct: 725  QNALKNLKIGEILSALVIEKSNDDISVEIQGLGLKATLP--------VGHLTDGSENKSR 776

Query: 776  YGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKK 834
              F          +  G V+   A+LD  +  RL+ L+ K   +         + AQ K 
Sbjct: 777  SSF--------KNIRVGQVLTDLAVLDKHEQRRLIVLTNKPALV---------KAAQSKT 819

Query: 835  RKR---EASKDLGVHQTVNAIV-------------EIVKENYLVLSLPEYNHSIGYASVS 878
              R   +  KD  VH  V  I               ++ +N +    PE N  +      
Sbjct: 820  LLRLFDDVKKDRTVHGFVKNITLTAVFVQFGGGLTGLLPKNMI----PEKNLRLPDFGFK 875

Query: 879  DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV 938
             + T +    +  NG       +A  +S    +  L      +      +  K      +
Sbjct: 876  KWQTVEVKVIKIDNGLRRFLLSLADATSDKKPQESLAPGTNQDAVNPVDETIKSIDDITL 935

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLFSNFKIGQTVTARI 996
            G L +A I+ +K  ++ ++      GRI +++  D  S +   +    +F   Q +  R+
Sbjct: 936  GRLTKARISSVKDTQVNVQLADNIQGRIDVSQAFDSWSEIKSKKQPLKSFSPKQIIDVRV 995

Query: 997  IAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1047
            +   +  + +         K+ ++ELS KPS  T +      L +   + +G     +V 
Sbjct: 996  LGIHDARNHRFLPISHRSGKTLVFELSAKPSDQTEAAQDPVSLDK---IKLGSSWLAFVN 1052

Query: 1048 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1107
             V  +   + +S +++ ++  LD + + S L++ +  F IG A+  HV  ++ E   L L
Sbjct: 1053 NVGADCLWVNLSPNVRGRISALDVSDDVSLLKDLEANFPIGSAIRVHVKGVDVETNRLDL 1112

Query: 1108 VLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1165
              R  QD               TF  + +G IV G+++++      ++VQI   +   ++
Sbjct: 1113 SARSSQDS-----------EALTFDRLSKGMIVPGKVTRV--NERQVMVQITDSISAPIN 1159

Query: 1166 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1225
             T+L +          D  + DP S Y +   V+  V ++    +    V LS R+S   
Sbjct: 1160 LTDLCD----------DFSEADP-SKYSKNDIVRVCVTDLDIPNK---RVRLSTRAS--- 1202

Query: 1226 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1285
                NSS    D +     +  I  L  N IV+G+VK+V  KG F+ L   + A V +S+
Sbjct: 1203 -RVMNSSAAVQDAE-----ISSISQLKVNDIVRGFVKHVADKGLFVNLGGNVTAYVRISD 1256

Query: 1286 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS--NLHV 1343
            LSD Y++  + EF + +LV G+V  V+ +   ++++LK S      +  I  L+  ++HV
Sbjct: 1257 LSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHIQLSLKPS---VIDKDYIAPLTFNDIHV 1313

Query: 1344 GDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1402
            G ++ G+I++VE +G+FI ++ + N+ GLCH SE++E  V +++ +Y  G++VK  +LK+
Sbjct: 1314 GQVITGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLYSDGDEVKAIVLKM 1373

Query: 1403 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA----VQD 1458
            D EK+RIS  MK+S+F+ D +     SE++  E ++        +  E+        VQD
Sbjct: 1374 DPEKKRISFSMKASHFE-DGEESDDGSEDDGVEGVKLDNMDLDDNDDESEGGVEFDDVQD 1432

Query: 1459 MDMESEDGGSLVLAQIESRA---SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKN 1515
            ++  +ED      +  E +     VP L     D   D+ N          E + ++EK 
Sbjct: 1433 LESATEDADEAFDSDEEMQDVGDDVPALSAGGFDWSADILNQADGQSNADSEEECVEEK- 1491

Query: 1516 NRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1575
                   +K +R+ EI+      L+ + P++  +FERL+   P+SS +W +YMAF + ++
Sbjct: 1492 ------PKKNKRKAEIKIDRTGDLDANGPQSVSDFERLLLGQPDSSSLWTQYMAFQMQLS 1545

Query: 1576 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
            ++ KAR +AERA++TIN+REE EKLNIW+A  NLE  YGN  +E V +VF+RA QY D +
Sbjct: 1546 ELGKAREVAERAIKTINMREETEKLNIWLALLNLEIAYGN--DETVEEVFKRACQYNDAQ 1603

Query: 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQR 1693
            +VH  L  +Y ++ +N+ ADEL   + KKF  S  VW+     L       +  +A++ R
Sbjct: 1604 EVHERLASIYIQSGKNEKADELFQTLTKKFSQSPTVWVNYAHFLFNTLGSPDRGRALLAR 1663

Query: 1694 ALLSLPRHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1751
            A  SLP H H+    + A LEF++  G  +RGR++FEG+L+++ KR D+W   LD EI+ 
Sbjct: 1664 ATQSLPPHTHLPLTLKFAALEFRSEHGSPERGRTIFEGVLAKWSKRLDIWGQLLDLEIKA 1723

Query: 1752 GDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            GD  + RG+FER   +  L PK  K  FK++ E+E+  G+++  E V+  A E+V S
Sbjct: 1724 GDAAIARGIFERVTRIKGLKPKGAKGWFKRWSEWEEVNGDKKSQERVRAIAEEWVRS 1780



 Score =  207 bits (527), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 292/1264 (23%), Positives = 531/1264 (42%), Gaps = 139/1264 (10%)

Query: 9    GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA--------------NE 54
            G  + G V+++N  D+ + LP  L G        D   +  IEA               +
Sbjct: 151  GSLVLGQVSQINATDIALSLPNNLTGYVPITSISDKATE-RIEAIAAAEEDDVEDELEVQ 209

Query: 55   DNLLPTIFHVGQLVSCIVLQLDDDKKEI----GKRKIWLSLRLSLLYKGLSLETVQEGMV 110
            D  L  +F +GQ +   V+   DD        GKR+I LSLR       ++ + +     
Sbjct: 210  DIDLKKMFSMGQYLRAYVVSTSDDTNTATLGKGKRRIELSLRPQHANNAVTSQNLIANTT 269

Query: 111  LTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRK 167
            L A V S+EDHG I++ GL      GF+   ++     + DV+ G +   +V  +    K
Sbjct: 270  LMASVTSVEDHGLIMNIGLEDSGIRGFMGAKDIGHEVVLADVQEGAVFLCMVTGLSSNGK 329

Query: 168  VVYLSSDPDTVSKCVTKD--LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
             V L +D   +      +      ++D  +PG  V   +  +   GV    +     T D
Sbjct: 330  TVKLCADTQKIGNLKKSNYLTDAPTVDAFLPGTAVEILIVDVSSRGVTGKVMGMVDVTAD 389

Query: 226  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLLH----------N 273
            + H          +  +    KV  R++   P S  + +G++L  ++            N
Sbjct: 390  LMHSGTGVMNQELEKKFKIGAKVRGRVICTFPNSDPQKLGVSLLDHVASLSPQQAGKPGN 449

Query: 274  RAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 331
            +  P   + +  I ++  + +V+ G+GL +D+    +  P +V IS V + ++  LE+  
Sbjct: 450  KVDPLDALPLSAIIEEVTIKKVESGVGLFVDVGVKGI--PGFVHISRVKDGKIETLEETT 507

Query: 332  --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVD 385
              YK GS  R R+L +  L+G+    L+ S  E       D+K G VVKGKV    +  +
Sbjct: 508  GPYKVGSVHRGRVLAYNSLDGVYLVSLEKSVLEQAYLRIEDLKVGEVVKGKVEKLIVNAN 567

Query: 386  SFGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKK 442
             FG  +V     +  L P  H+++ +++ P KKFK G  +  RVL      ++I +T KK
Sbjct: 568  GFGGLLVNLAENISGLVPETHLADVQLLHPEKKFKEGMSVTARVLSTDPGKRQIRLTLKK 627

Query: 443  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
            TLV S+    +SY      + + G I  I   G  V+FY  ++GF P SE+      +PS
Sbjct: 628  TLVNSESPAFTSYDGIIVGMQSPGTIVNIMNTGAVVQFYGNIRGFLPVSEMSEAYIQDPS 687

Query: 503  SMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVT 556
              + VGQVV   ++   P S+++ +S      F +      ++  +K+G ++S +V   +
Sbjct: 688  QHFKVGQVVNVHVLKVDPESQKLTVSCKDPSVFGLAQQNALKN--LKIGEILSALVIEKS 745

Query: 557  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESSN--LL 613
             + + V +   G  K T+P  HL D  E+ +      I+ G     L VLD       ++
Sbjct: 746  NDDISVEIQGLGL-KATLPVGHLTDGSENKSRSSFKNIRVGQVLTDLAVLDKHEQRRLIV 804

Query: 614  LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
            L+ K +L+ +AQ   L      +  +  VHG+V NI  T  FV+F G LTG  P++   +
Sbjct: 805  LTNKPALVKAAQSKTLLRLFDDVKKDRTVHGFVKNITLTAVFVQFGGGLTGLLPKNMIPE 864

Query: 672  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 731
                     +   Q+V   ++ +++   R  LSL      +T     QE          +
Sbjct: 865  KNLRLPDFGFKKWQTVEVKVIKIDNGLRRFLLSL----ADATSDKKPQESLAPGTNQDAV 920

Query: 732  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 791
                     +K ++   +G + + ++    D  V V   ++  + G I   Q   +  E 
Sbjct: 921  NPVDET---IKSIDDITLGRLTKARISSVKDTQVNVQLADN--IQGRIDVSQAFDSWSEI 975

Query: 792  GSVIQA-------AILDV-------AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 837
             S  Q         I+DV       A+  R + +S ++     F E ++    Q +  + 
Sbjct: 976  KSKKQPLKSFSPKQIIDVRVLGIHDARNHRFLPISHRSGKTLVF-ELSAKPSDQTEAAQD 1034

Query: 838  EASKD-LGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQ 894
              S D + +  +  A V  V  + L ++L P     I    VS D +  K  +  F  G 
Sbjct: 1035 PVSLDKIKLGSSWLAFVNNVGADCLWVNLSPNVRGRISALDVSDDVSLLKDLEANFPIGS 1094

Query: 895  SVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLEL 954
            ++   V  +   +   RL L  ++  ++E  +  R  K      G +V  ++T +   ++
Sbjct: 1095 AIRVHVKGVDVETN--RLDLSARSSQDSEALTFDRLSK------GMIVPGKVTRVNERQV 1146

Query: 955  RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1014
             ++        I++T++ DD S    + +S                 K D+ +  + +L 
Sbjct: 1147 MVQITDSISAPINLTDLCDDFSEADPSKYS-----------------KNDIVRVCVTDLD 1189

Query: 1015 IKPSMLTVSEIGSKLL-----FEECDVS------IGQRVTGYVYKVDNEWALLTISRHLK 1063
            I    + +S   S+++      ++ ++S      +   V G+V  V ++   + +  ++ 
Sbjct: 1190 IPNKRVRLSTRASRVMNSSAAVQDAEISSISQLKVNDIVRGFVKHVADKGLFVNLGGNVT 1249

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF---QDGISDKT 1120
            A + I D     S +++++  F + + V G V  +++    ++L L+P    +D I+  T
Sbjct: 1250 AYVRISD--LSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHIQLSLKPSVIDKDYIAPLT 1307

Query: 1121 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1180
                ND     IH G ++ G+I K+      +VV    ++ G  H +E+    V D    
Sbjct: 1308 F---ND-----IHVGQVITGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKL 1359

Query: 1181 YDEG 1184
            Y +G
Sbjct: 1360 YSDG 1363



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 36/284 (12%)

Query: 183  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF----PTTNW 238
            ++D + ++ D L  GM+V  +V  + E  VM+      +  +++  L + F    P+   
Sbjct: 1117 SQDSEALTFDRLSKGMIVPGKVTRVNERQVMVQITDSISAPINLTDLCDDFSEADPSKYS 1176

Query: 239  KNDYNQHKKVNARILFVD---PTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 295
            KND         R+   D   P  R    T    ++++ A     ++  I  Q KV  + 
Sbjct: 1177 KNDI-------VRVCVTDLDIPNKRVRLSTRASRVMNSSAAVQDAEISSI-SQLKVNDIV 1228

Query: 296  RGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG---- 344
            RG        GL +++     +  AYV ISD+++  ++  + +++    V+ ++      
Sbjct: 1229 RGFVKHVADKGLFVNLGG---NVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEV 1285

Query: 345  FRHLE-GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALC 401
              H++  L   ++       L F  +D+  G V+ GK+  V+ FG  +   G   V  LC
Sbjct: 1286 LNHIQLSLKPSVIDKDYIAPLTF--NDIHVGQVITGKIRKVEDFGVFIVVDGSANVSGLC 1343

Query: 402  PLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 443
                M+E  +    K +  G E+   VL +  + KRI+ + K +
Sbjct: 1344 HQSEMAEKRVHDVKKLYSDGDEVKAIVLKMDPEKKRISFSMKAS 1387


>gi|426253041|ref|XP_004020210.1| PREDICTED: protein RRP5 homolog [Ovis aries]
          Length = 1873

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 399/1410 (28%), Positives = 661/1410 (46%), Gaps = 162/1410 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D   +  NE  A E+ L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYTEKLNEQVAQEEPLQDLV 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  LD  K   GK+ + LSL    + + LS ET++ GM+LT  V 
Sbjct: 138  GLPELFSPGMLVRCVVSSLDTTK--WGKKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +  +  VV L
Sbjct: 196  SLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGARLKVGQYLNCLIEEVKGSGGVVTL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L FL++F+G VD  HL  
Sbjct: 256  SIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     ++V A +L V P +RAV L+L P  L    P + +   ++G + D 
Sbjct: 316  KRAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPIFLQPGRPLTRLLCQQLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V       G    +    +   AY   + ++  +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFGNAGATFKLKDGAL---AYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D+KPG +VKGKV+ +   G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              I  P KK+ VG E+  RVL    K+K++ +T KKTLV+SKL  ++ Y +A   L THG
Sbjct: 488  ILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++++GC V+FYN VQG  PR EL  +   +P S+++ GQVVK  +++  P+  R+ 
Sbjct: 548  FILRVKEYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVAVLNCEPSKERML 607

Query: 527  LSFMM--KPTRVSEDDLVKLGSLVSG--VVDV----VTPNAVVVYVIAKGYSKGTIPTEH 578
            LSF +   P +  E    K    VS   +VDV     T + + V V+      G +PT H
Sbjct: 608  LSFRLLSDPKQECEGQSQKKKKAVSAGQLVDVKILEKTKDGLKVAVLPHNIP-GFLPTAH 666

Query: 579  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 636
            L+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P   S IHP
Sbjct: 667  LSDHVTNGPLLYHWLQTGDTLHRVLCLSASEERVLLCRKPALVSAVEGGQNPKSFSEIHP 726

Query: 637  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              ++ G+V NI + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ 
Sbjct: 727  GMLLIGFVKNIKDYGVFIQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDK 786

Query: 697  ETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQ-SSKHNGSELKWVEGFIIGSV 752
            E  R+ LSL+ S C+  D +          LEE+  +    S  +   ++ +     G  
Sbjct: 787  EKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNQDSVLIQTLAEMTPGMA 846

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLV 809
            ++ +V E  + G V+ F E   V G +   + +  AG  +E G   +A IL+V   +  V
Sbjct: 847  LDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKLEV 904

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    +        NR+A+K K+  +          + AIV+ ++E++ V SL E  
Sbjct: 905  HVSLCHDLV--------NRKAKKLKKGSD----------LQAIVQHLEESFAVASLVETG 946

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 947  HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVTG--LLLAVEGPAAKRTMRQA 1004

Query: 929  RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 1005 RKDSETVDEDEEVDPALVIGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHAS 1064

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKP 1017
             + DD   V  +  +  K+G+ VTAR+I      DMK   FL            ELS++P
Sbjct: 1065 HILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRP 1120

Query: 1018 SML-----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFIL 1069
            S L     T     S    E+      GQ VT ++  Y +  +W  + I+  ++ ++ +L
Sbjct: 1121 SELKEDGHTALNTHSVSPLEKIKQYQAGQTVTCFLKKYNMVKKWLEVEIAPDVRGRIPLL 1180

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLS-INKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
             ++     L+   ++F IG+A+   V+   +  K  L L L             I    +
Sbjct: 1181 LTSLSFKVLKHPDKKFQIGQALKATVVGPADSSKAFLSLSL-------------IGPHKL 1227

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            +    +G++  GR+ K+ +   GL V      +GRV    +    VSD    Y E +   
Sbjct: 1228 K----KGEVAMGRVVKV-TPKEGLTVSFP---FGRVGRVSM--FHVSD---SYSETR--- 1271

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
            L  +   Q V+C VL  +  V     + LSLRS     S TN    S   D     +  I
Sbjct: 1272 LEDFAPQQIVRCYVLSAASPV-----LTLSLRS-----SRTNPETKSKITDP---EINSI 1318

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLVA 1305
            +DL    +++G+VK+V   G  + L   +       ++S  +    +P ++  P GKL+ 
Sbjct: 1319 KDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLAQHPHVSQHNQSKNAPYDRHLPEGKLLT 1378

Query: 1306 GRVLSVEPLSKRVEVTL-----KTSDSRTA 1330
             +VL +      VE++L        D+R+A
Sbjct: 1379 AKVLRLNHQESLVELSLLPDATGKQDARSA 1408



 Score =  263 bits (671), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 150/305 (49%), Positives = 213/305 (69%), Gaps = 11/305 (3%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERL--LEK---DAPRTPD---EFERLVRSSPNSSFV 1563
            DEK  +  KKK K+ERE E + AE+ L  LE+   D  R P+   +F+RLV SSP+SS +
Sbjct: 1565 DEKPEQATKKKSKKERELEKQKAEKELSRLEEALMDPGRQPESAEDFDRLVLSSPSSSLL 1624

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1625 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1682

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1682
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1683 VFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRG 1742

Query: 1683 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742
            + E    V+QRAL  LP+ +H+  I++ A LEF+ G A+R R++FE  LS YPKRTD+WS
Sbjct: 1743 KAEACHHVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTDVWS 1802

Query: 1743 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
            +Y+D  I+ G     R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1803 VYIDMIIKHGSQKEARDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKAL 1862

Query: 1803 EYVES 1807
            EYVE+
Sbjct: 1863 EYVEA 1867



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1366
              +P +K++ +TLK    +T  +S++  ++   +   G    G I RV+ YG  +   N 
Sbjct: 509  LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKEYGCIVKFYN- 563

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            ++ GL    ELS ++V + E+++  G+ VKV +L  +  K R+ L  +
Sbjct: 564  DVQGLVPRHELSAEYVPDPESVFYTGQVVKVAVLNCEPSKERMLLSFR 611



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 179/460 (38%), Gaps = 71/460 (15%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
            G +V+A++ ++ PL L LKF   F G +    ++  ++      FSN    Q V A ++ 
Sbjct: 281  GLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDPKRAG---TYFSN----QQVRACVLC 333

Query: 999  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC-----DVSIGQRV--TGYVYKVDN 1051
                    ++    LS++P  L      ++LL ++      DV +       G  +K+ +
Sbjct: 334  VH-----PRTRAVRLSLRPIFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGNAGATFKLKD 388

Query: 1052 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1111
                     HL          ++P         F  G      ++  ++  +L  L LR 
Sbjct: 389  GALAYARRNHLSNS----KKTFKPEA-------FKPGNTHKCRIIDYSQMDELALLSLR- 436

Query: 1112 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1171
                I +      +D     I  G +V G++  I     G+VV++G  + G V    L +
Sbjct: 437  --TSIIEAQFLWYHD-----IKPGALVKGKVLTIKPH--GMVVKMGKQIRGLVPTMHLAD 487

Query: 1172 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1231
            I + +P   Y  G        DE   VKC+VL      +      ++L+ +L        
Sbjct: 488  ILIKNPEKKYHVG--------DE---VKCRVLLCDPKAKKLM---MTLKKTL-------- 525

Query: 1232 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1291
                  V++    +   +D  P +   G++  V   GC +     +   V    LS  YV
Sbjct: 526  ------VESKLPAITCYDDAKPGLQTHGFILRVKEYGCIVKFYNDVQGLVPRHELSAEYV 579

Query: 1292 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-TSDSRTASQSEINNLSN-LHVGDIVIG 1349
              PE  F  G++V   VL+ EP  +R+ ++ +  SD +   + +       +  G +V  
Sbjct: 580  PDPESVFYTGQVVKVAVLNCEPSKERMLLSFRLLSDPKQECEGQSQKKKKAVSAGQLVDV 639

Query: 1350 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
            +I      GL + +   N+ G    + LS DHV N   +Y
Sbjct: 640  KILEKTKDGLKVAVLPHNIPGFLPTAHLS-DHVTNGPLLY 678



 Score = 47.4 bits (111), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 169/447 (37%), Gaps = 75/447 (16%)

Query: 986  FKIGQTVTARIIAKSNKPDM----------KKSFLWELSIKPSMLTVSEIGSKLLFEECD 1035
            FK G T   RII  S   ++          +  FLW   IKP  L   ++          
Sbjct: 411  FKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKV---------- 460

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
              +  +  G V K+  +   L  + HL A + I +           ++++H+G  V   V
Sbjct: 461  --LTIKPHGMVVKMGKQIRGLVPTMHL-ADILIKNP----------EKKYHVGDEVKCRV 507

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1155
            L  + + K L + L+          +   +D        G I+  R+ +      G +V+
Sbjct: 508  LLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFIL--RVKEY-----GCIVK 560

Query: 1156 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1215
                + G V   EL    V DP S +          Y  GQ VK  VL    +       
Sbjct: 561  FYNDVQGLVPRHELSAEYVPDPESVF----------YT-GQVVKVAVLNCEPSKERML-- 607

Query: 1216 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLS 1274
             LS R   D                 G+  +K + +S   +V   +   T  G  + +L 
Sbjct: 608  -LSFRLLSDPKQECE-----------GQSQKKKKAVSAGQLVDVKILEKTKDGLKVAVLP 655

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG----RVLSVEPLSKRVEVTLKTS-DSRT 1329
              +   +  ++LSD     P        L  G    RVL +    +RV +  K +  S  
Sbjct: 656  HNIPGFLPTAHLSDHVTNGP---LLYHWLQTGDTLHRVLCLSASEERVLLCRKPALVSAV 712

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
                   + S +H G ++IG +K ++ YG+FI    + L GL   + LS+  V +    +
Sbjct: 713  EGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFIQFP-SGLSGLAPKAILSDKFVTSTSDHF 771

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSS 1416
              G+ V  K+  VDKEK+R+ L ++ S
Sbjct: 772  VEGQTVVAKVTNVDKEKQRMLLSLRLS 798


>gi|242817707|ref|XP_002487008.1| rRNA biogenesis protein RRP5, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218713473|gb|EED12897.1| rRNA biogenesis protein RRP5, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1810

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 376/1388 (27%), Positives = 673/1388 (48%), Gaps = 172/1388 (12%)

Query: 505  YHVGQVVKCRIMSSIPASRRINLSFMMK----PTRVSEDDLVKLGSLVSGVVD--VVTPN 558
            +  G   K RI+          LSF  K    P    ED  V LG +V G ++  ++ P 
Sbjct: 506  FKTGSTHKARIIGHNSVDNLYLLSFEKKVIDQPYIRLED--VPLGEVVKGKIEKLLIGPE 563

Query: 559  AV--VVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 614
             +  ++  IA G + G +P+ H AD  L+H    +   + G     ++L ++ E   + L
Sbjct: 564  GIDGLILSIADGIT-GLVPSMHFADTVLQHP---EKKFREGLAISARVLSVNLEKRQMRL 619

Query: 615  SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 674
            + K SL+NS   +  D + I P     G + NI   G  V+F G + GF P S+  +   
Sbjct: 620  TLKKSLLNSDSAIWKDYNDIVPGQQSPGTLINIQPNGATVQFYGTVRGFLPVSEMSEAYI 679

Query: 675  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 734
             D S+ +  GQ V  + + V+  + ++ +S K     ST +   +E F            
Sbjct: 680  KDPSQHFRKGQVVNVHAISVDISSDKLVVSCKDP---STSSEAYREAF------------ 724

Query: 735  KHNGSELK---WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 791
                SE++    V G +     +  + + + +GV         V G  +    A A +  
Sbjct: 725  ----SEIRPGVSVTGTVFEKSSDDLLLKLDKYGVTARLSAVHLVDGDASKAASAFAKIRV 780

Query: 792  GSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVN 850
            G  +    +L+  +  RL+ ++ K           S R+A KK       ++L V   V 
Sbjct: 781  GQKLSDLLVLEAKRVHRLIKVTHKP----------SLRKALKKNSLPSTFEELEVGTEVT 830

Query: 851  AIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 909
              V         V  L   N  +    V D ++   P   F   Q++ AT+  +      
Sbjct: 831  GFVRGTTSHGVFVEFLGGLNGLLPRRLVDDEHSN-MPDFGFYPSQALTATIHQIDEDHR- 888

Query: 910  GRLLLLLKAISETETSSSKRAKKK-------------------SSYDVGSLVQAEITEIK 950
             R  L ++ +     S   ++K++                   + Y VG + +A I  IK
Sbjct: 889  -RFTLTMRPVELPTASRQAQSKERPLPEDEKPVNPVDESIQTVAEYTVGKVTKARILSIK 947

Query: 951  PLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK-- 1002
              ++ +       GRI ++EV D   ++ +       F++ + +  RI+    A+S++  
Sbjct: 948  ETQINVVLADNLQGRIDVSEVFDKWEDIKDRKQPLQKFRVKEILPVRILGLHDARSHRFL 1007

Query: 1003 ---PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1059
                   K  ++ELS KPS +T  E    L  E+  V +G  + G+V  +++++  +++S
Sbjct: 1008 PISHRTSKHPVYELSAKPSFITAGE-RKPLSLEQ--VKVGSSMIGFVNNINDDYLWISLS 1064

Query: 1060 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
             +++ ++  +D + + S L + +  + +G A+   V  ++ +K  L L ++      S  
Sbjct: 1065 PNVRGRVRAIDLSDDLSTLTDLESNYPMGSALKVRVTGVDSDKGHLDLSVK------SGS 1118

Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
            T ++S D +     +G I+ GR++K+      +++Q+   L G V  T++     +D  S
Sbjct: 1119 TRELSFDKLS----KGMILPGRVTKVTEK--QIIMQLSDSLVGAVTITDM-----ADDYS 1167

Query: 1180 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1239
              D       S Y + + ++  ++++ ++ +  F   LSLR S           LS+ + 
Sbjct: 1168 KID------TSIYKKNEILRACIIDVDKSNKKIF---LSLRPS---------KVLSSTLP 1209

Query: 1240 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1299
               + +  I+ L  N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF 
Sbjct: 1210 VRDREITSIDQLKVNDIVRGFVRKVADNGLFVTLGHSVSAYVRISDLSDSYLKEWKDEFQ 1269

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
              +LV GR++ V+  +KR++++LK S   +  ++ I  + +L  G IV G++++VE +G 
Sbjct: 1270 ADQLVKGRIIFVDQENKRLQMSLKESVLDSNYKTPIT-IRDLKPGQIVTGKVRKVEDFGA 1328

Query: 1360 FITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
            FI I+ + N+ GLCH S+++E ++D+   ++ AG+ VK KILK+D ++ +IS G+K+SYF
Sbjct: 1329 FIVIDRSANVSGLCHRSQMAEQNIDDARKLFEAGDIVKAKILKIDPKQEKISFGLKASYF 1388

Query: 1419 KNDADNLQMSSEEESDE--AIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLV------ 1470
            K   D   + SEE SDE  +++E G     S      +++  +++E              
Sbjct: 1389 K---DEEGLDSEEGSDEDLSMDEAGGVELHSDDSGEDMSIGGVEIEDGSDDESESSDDDE 1445

Query: 1471 -LAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQ 1529
             +   + RA      +++ D     D G+S     TD  K + E+    A  K+K  R+ 
Sbjct: 1446 DVTTADERAQNDKGGLDVGDFDWTGDAGLSSTSKITD-GKAVGEE----ASNKKKRIRKP 1500

Query: 1530 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            EI+  +   L+   P++  ++ERL+   P+SS +W++YMAF L + +V+KAR I +RA++
Sbjct: 1501 EIQVDQTGDLDARGPQSVADYERLLLGEPDSSLLWLQYMAFQLELGEVDKAREIGQRAIR 1560

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
            +I+I ++ EKLNIWVA  NLEN YG   ++++ +VF++A QY D ++++  L+ +Y ++ 
Sbjct: 1561 SISIGQDTEKLNIWVALLNLENTYGT--DDSLEEVFKKACQYNDTQEIYERLISIYIQSG 1618

Query: 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLSLPRHKHIKF 1706
            +N+ ADEL    +KK  +S + +       L       +  + +  RAL SLP + H+  
Sbjct: 1619 KNEKADELFQTALKKKVYSGQKFFINYATFLFDTLANPDRGRDLFPRALQSLPSNTHVDT 1678

Query: 1707 ISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1764
              +   LEF+  NG  +RGR++FEG+LS +PKRTDLW+I LD EI+ GD D +R +F+R 
Sbjct: 1679 TCKFIQLEFRSPNGDVERGRTLFEGLLSSFPKRTDLWNILLDLEIKQGDADQVRSVFQRV 1738

Query: 1765 ISLS--------------------LPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQ 1799
            + +S                    L PKK +F FKK+L++E+ +     G E+ +E VK 
Sbjct: 1739 LGISTVLKKKGAVPTPASTETQKKLKPKKARFFFKKWLDFEEKLAAAEGGNEKMVEEVKA 1798

Query: 1800 KAMEYVES 1807
            +A +YV S
Sbjct: 1799 RAADYVNS 1806



 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 312/1309 (23%), Positives = 570/1309 (43%), Gaps = 122/1309 (9%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDN---- 56
            + ++ G  + G V  +N  D+ + LP  L G   L   ++  D  ++N + A ++N    
Sbjct: 154  KRLTIGTMVLGQVTSINSHDIGLALPNNLTGYVPLTAISEVFDKKIENVLNAEDENEDDD 213

Query: 57   -----LLPT-IFHVGQLVSCIVLQLDDDKKEIG----KRKIWLSLRLSLLYKGLSLETVQ 106
                 L P+  F+VGQ +   V        E G    K+KI LSL       GLS   + 
Sbjct: 214  SEEDSLDPSDYFYVGQYLRAYVTSTGSSAVEAGTAKIKKKIELSLDPRQANTGLSESDLV 273

Query: 107  EGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 164
            EG ++ A V SIEDHG ++  GL      GF+   + A  S I  K G +L  +V  ++ 
Sbjct: 274  EGAMVQASVASIEDHGCVMDIGLGKKGAKGFMASTDEAIQSNI--KEGAVLLCIVTGVNA 331

Query: 165  TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 224
            +R +  LSS   T +   +      +I   +PG      + S+ E G++   +     TV
Sbjct: 332  SRTIFQLSSKLQTAASPKSVLKSAPTIQTFLPGTAAEILLTSVTETGLVGKIMGLLDATV 391

Query: 225  DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLHNRAPPSHVKV 282
            D  H      + N    Y    K+ ARI    P +    VG ++   +L  R  PS  +V
Sbjct: 392  DFVHSGANSGSFNLTTKYQLGAKIKARITCTFPAAEPFKVGASVLENILEWRRTPSTQEV 451

Query: 283  -----GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKE 334
                 G I D ++V  V+ GLGL ++  S  +    +V IS VA+   E +   +  +K 
Sbjct: 452  SSPSIGTILD-ARVTTVEPGLGLYVEFGS--LKHLGFVHISRVADGTVESISAEQGAFKT 508

Query: 335  GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GA 389
            GS  + RI+G   ++ L     +    +       DV  G VVKGK+    I  +   G 
Sbjct: 509  GSTHKARIIGHNSVDNLYLLSFEKKVIDQPYIRLEDVPLGEVVKGKIEKLLIGPEGIDGL 568

Query: 390  IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS 447
            I+    G+  L P  H ++  +  P KKF+ G  +  RVL V  + +++ +T KK+L+ S
Sbjct: 569  ILSIADGITGLVPSMHFADTVLQHPEKKFREGLAISARVLSVNLEKRQMRLTLKKSLLNS 628

Query: 448  KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 507
              AI   Y +      + G +  I+ +G  V+FY  V+GF P SE+      +PS  +  
Sbjct: 629  DSAIWKDYNDIVPGQQSPGTLINIQPNGATVQFYGTVRGFLPVSEMSEAYIKDPSQHFRK 688

Query: 508  GQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVV 562
            GQVV    +S   +S ++ +S    P+  SE        ++ G  V+G V   + + +++
Sbjct: 689  GQVVNVHAISVDISSDKLVVS-CKDPSTSSEAYREAFSEIRPGVSVTGTVFEKSSDDLLL 747

Query: 563  YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYS 619
             +   G +   +   HL D     A    + I+ G +   LLVL+ +  + L+  + K S
Sbjct: 748  KLDKYGVT-ARLSAVHLVDGDASKAASAFAKIRVGQKLSDLLVLEAKRVHRLIKVTHKPS 806

Query: 620  LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
            L  + ++  LPS    +   + V G+V      G FV FLG L G  PR + VD + +++
Sbjct: 807  LRKALKKNSLPSTFEELEVGTEVTGFVRGTTSHGVFVEFLGGLNGLLPR-RLVDDEHSNM 865

Query: 678  SK-TYYVGQSVRSNILDVNSETGRITLSLKQ-SCCSSTDASFMQEHFLLEEKIAMLQSSK 735
                +Y  Q++ + I  ++ +  R TL+++     +++  +  +E  L E++    +   
Sbjct: 866  PDFGFYPSQALTATIHQIDEDHRRFTLTMRPVELPTASRQAQSKERPLPEDE----KPVN 921

Query: 736  HNGSELKWVEGFIIGSVIEGKVHE----------SNDFGVVVSFEEHSDVYGFITHHQLA 785
                 ++ V  + +G V + ++            +++    +   E  D +  I   +  
Sbjct: 922  PVDESIQTVAEYTVGKVTKARILSIKETQINVVLADNLQGRIDVSEVFDKWEDIKDRKQP 981

Query: 786  GATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 843
                    ++   IL +  A++ R + +S +T     +  +         +RK  + + +
Sbjct: 982  LQKFRVKEILPVRILGLHDARSHRFLPISHRTSKHPVYELSAKPSFITAGERKPLSLEQV 1041

Query: 844  GVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVM 901
             V  ++   V  + ++YL +SL P     +    +S D +T    +  +  G ++   V 
Sbjct: 1042 KVGSSMIGFVNNINDDYLWISLSPNVRGRVRAIDLSDDLSTLTDLESNYPMGSALKVRVT 1101

Query: 902  ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIG 961
             +   S  G L L +K+ S  E S  K +K       G ++   +T++   ++ ++    
Sbjct: 1102 GV--DSDKGHLDLSVKSGSTRELSFDKLSK-------GMILPGRVTKVTEKQIIMQLSDS 1152

Query: 962  FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII--AKSNKPDMKKSFLWELSIKPSM 1019
              G + IT++ DD S +  ++   +K  + + A II   KSN    KK F   LS++PS 
Sbjct: 1153 LVGAVTITDMADDYSKIDTSI---YKKNEILRACIIDVDKSN----KKIF---LSLRPSK 1202

Query: 1020 LTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSE 1077
            +  S   +  + +     + +   V G+V KV +    +T+   + A + I D     S 
Sbjct: 1203 VLSSTLPVRDREITSIDQLKVNDIVRGFVRKVADNGLFVTLGHSVSAYVRISD--LSDSY 1260

Query: 1078 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE--- 1134
            L+E++  F   + V G ++ +++E K L++ L+        ++V  SN      I +   
Sbjct: 1261 LKEWKDEFQADQLVKGRIIFVDQENKRLQMSLK--------ESVLDSNYKTPITIRDLKP 1312

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            G IV G++ K+      +V+    ++ G  H +++    +            D    ++ 
Sbjct: 1313 GQIVTGKVRKVEDFGAFIVIDRSANVSGLCHRSQMAEQNID-----------DARKLFEA 1361

Query: 1195 GQFVKCKVLEIS-RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1242
            G  VK K+L+I  +  + +F ++ S     +G+ S   SD    +D  G
Sbjct: 1362 GDIVKAKILKIDPKQEKISFGLKASYFKDEEGLDSEEGSDEDLSMDEAG 1410


>gi|159129996|gb|EDP55110.1| rRNA biogenesis protein RRP5, putative [Aspergillus fumigatus A1163]
          Length = 1822

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 368/1347 (27%), Positives = 660/1347 (48%), Gaps = 163/1347 (12%)

Query: 542  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGTVVKGKIEKLLIGPAGVDGLIVTLADGIT-GLVPSMHFADTALQFPEKK--FREGM 610

Query: 598  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
                ++L ++ +   + L+ K SL+NS   +  D   I P S   G + NI   G  V+F
Sbjct: 611  TITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQF 670

Query: 657  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVSCKDP------ST 724

Query: 717  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHES----NDFGVVVSFEE 771
            F + +    EKI                 G  + G+V E  V +     ++FG++   + 
Sbjct: 725  FTETYRKAFEKIQ---------------PGLRVTGTVFEKSVDDVLLKLDEFGLIARLDL 769

Query: 772  HSDVYGFITHHQLAGATVESGSVIQAA-ILDVAKAERLVDLSLKTVFIDRFREANSNRQA 830
               V G  +    A + +  G  +    +LD+ +A RL+ +S +           S ++A
Sbjct: 770  AHVVDGPESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKA 819

Query: 831  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQ 887
             K+       +D+     V   V  +  + L +        IG      ++D N  K P 
Sbjct: 820  AKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEF--LGGIIGLVPKRLLADENVNK-PD 876

Query: 888  KQFLNGQSVIATVMAL------------PSSSTAG----RLLLLLKAISETETSSSKRAK 931
               +  Q V ATV ++            PS +T+            +  E   +  +  K
Sbjct: 877  YDMVKSQLVTATVHSIDRDFQRFILSMKPSEATSAGPKKPAPKPTPSNDEVTNAVDESIK 936

Query: 932  KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIG 989
              S +  G  V  ++  +K  ++ ++      GRI ++EV D   ++ +       F+  
Sbjct: 937  SMSDFTFGRTVNCKVVSVKATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFRPK 996

Query: 990  QTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1040
            Q ++ARI+    A+S+K  P   +S    ++ELS+KPS L  +   S L  E+  V +G 
Sbjct: 997  QLISARILGIHDARSHKFLPISHRSGKFPVFELSVKPSFLQAAN-PSPLNLEQ--VQVGS 1053

Query: 1041 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1100
               G+V  V ++   + +S +++ +L  +D++ + S   + ++ F IG A+  HV +++ 
Sbjct: 1054 TWVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAAVDT 1113

Query: 1101 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1160
            EK  L L  +     +S + + +           G I+ GR++K+      +++Q+   +
Sbjct: 1114 EKGRLDLTAKQRSSKLSFEDISV-----------GMILPGRVTKVTEK--QVIMQLSDTV 1160

Query: 1161 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1220
             G V+  +L +          D  + +P + Y +   ++  V+ + +  +    + LSLR
Sbjct: 1161 VGAVNLIDLAD----------DYSKANP-TVYHKNDVLRACVVGVDKANK---KISLSLR 1206

Query: 1221 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1280
             S           LS+ +      +  ++ L  N +V+G+VK V   G F+ L   + A 
Sbjct: 1207 PS---------KVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAY 1257

Query: 1281 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1340
            V +S+LSD Y++  +  F + +LV GRV  V+P   R++++LK S      ++ I  + +
Sbjct: 1258 VRVSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPIT-MHD 1316

Query: 1341 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1399
            L VG  V G++++VE +G FI I+ + N+ GLCH SE+++  VD+  T+Y  G+ VK KI
Sbjct: 1317 LKVGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKI 1376

Query: 1400 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE---AIEEVGSYNRSSLLENSSVAV 1456
            +K+D+E  +IS  +K+S+FK+  +  +  S+EE D    +++ +G  +     ++     
Sbjct: 1377 IKIDRESGKISFSLKASHFKDHDEEDESGSDEEGDSNGVSLDGMGGVDVEGSDDSEDDDD 1436

Query: 1457 Q-------DMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1509
                    D++ +SE  G      +E  ++    +  L     D    +  ++    ++ 
Sbjct: 1437 DDESMGGVDLEEDSESDGGESDEDVEMTSAPVKRDGGLGATGFDWSGNVKDDEDEAMQSD 1496

Query: 1510 TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMA 1569
            + DE N+R  KKK ++   Q  R  E   L+ + P++  ++ERL+   P+SS +W+KYMA
Sbjct: 1497 SDDEDNSRKKKKKSRKPEIQVDRTGE---LDANGPQSVADYERLLLGEPDSSLLWLKYMA 1553

Query: 1570 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1629
            F L + +VEKAR IAERAL+TI+I ++ EKLNIWVA  NLEN YGN  ++++ +VF+RA 
Sbjct: 1554 FQLELGEVEKAREIAERALRTISIGQDTEKLNIWVALLNLENTYGN--DDSLDEVFKRAC 1611

Query: 1630 QYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EG 1686
            QY D ++++  +  +Y ++ +N+ ADEL    + KK  ++ K +L     L       + 
Sbjct: 1612 QYNDTQEIYDRMTSIYIQSGKNEKADELFQTALKKKISNTPKFFLNYASFLFDSMAAPDR 1671

Query: 1687 VQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIY 1744
             ++++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ 
Sbjct: 1672 ARSLLPRALQSLPSHTHVELTSKFGQLEFRSPNGDVERGRTVFEGLLSSFPKRVDLWNVL 1731

Query: 1745 LDQEIRLGDVDLIRGLFERAISL-------------------SLPPKKMKFLFKKYLEYE 1785
            LD EI+ GD + +R LFER + +                    L PK+ KF FKK+L +E
Sbjct: 1732 LDLEIKNGDAEQVRRLFERVLGIRDAKKGAAAAVATPTDASKKLRPKQAKFFFKKWLSFE 1791

Query: 1786 KSV-----GEEERIEYVKQKAMEYVES 1807
            + +     G+E+ +E +K +A +YV+S
Sbjct: 1792 EKLAAANGGDEKMVEEIKARAADYVKS 1818



 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 193/771 (25%), Positives = 333/771 (43%), Gaps = 72/771 (9%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN-EDNLLPTI- 61
           + I  G  + G V+ +N  D+ + LP  L G      A+   LD +IE    DN      
Sbjct: 152 KRIVPGSMVLGQVSSINAHDIGLSLPNNLTGYVPLT-AVSKKLDEKIEKILNDNDNEDSD 210

Query: 62  ----------------FHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSL 102
                           F++GQ +   V+ +     D     K++I LS+       GLS 
Sbjct: 211 AEEEDGDDDSLDLTDYFYLGQYLRASVVSVGSNAADAPSKNKKRIELSVDPRQANAGLSK 270

Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVV 159
             ++    + A V S+EDHG ++  G+      GF+ +  +   +    +K G +   +V
Sbjct: 271 SDLEVNTAIQASVVSVEDHGLVMDLGIEGADVKGFMSKKEIDPKTDYSSIKEGSVFLCMV 330

Query: 160 RSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
              +    VV LS++  +              +I+  +PG      +  +  +G++   +
Sbjct: 331 TGQNANGSVVKLSANLQSAGSIKKSHYLSTASTINSFLPGTAAEILLTEVSSSGLIGKIM 390

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL---- 271
                TVD+          +    +    K+  RI+   P S    VG ++  ++L    
Sbjct: 391 GMLDATVDLVQSGGNSGKDDLTKKFQMGAKIKGRIVCTFPASEPFKVGFSILDHVLKFAT 450

Query: 272 HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
               P +      +  I  ++KVV VD G+G+ + + ST      +V +S +A+ +V  +
Sbjct: 451 EGHGPGTSEDAPAISAIIPETKVVMVDPGMGVYVQMGST--KHVGFVHVSRLADGKVEHI 508

Query: 329 EKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV---- 381
             +   ++  S    R++G+   +GL     +    E       DV  G VVKGK+    
Sbjct: 509 APEHGPFRIDSVHEARVVGYSAFDGLYLLSFERKVIEQPFLRLEDVTVGTVVKGKIEKLL 568

Query: 382 ---IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 436
                VD  G IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I
Sbjct: 569 IGPAGVD--GLIVTLADGITGLVPSMHFADTALQFPEKKFREGMTITARILSVNLQKRQI 626

Query: 437 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 496
            +T KK+L+ S+ AI   Y +      + G I  I+ HG  V+FY  V+GF P SE+   
Sbjct: 627 RLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEMSEA 686

Query: 497 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGV 551
              +PS  +  GQVV    +S  PA  ++ +S    P+  +E      + ++ G  V+G 
Sbjct: 687 YIKDPSQHFRQGQVVNVHALSVDPALGKLAVS-CKDPSTFTETYRKAFEKIQPGLRVTGT 745

Query: 552 VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESS 610
           V   + + V++ +   G     +   H+ D  E   +   S I+ G + + LLVLD + +
Sbjct: 746 VFEKSVDDVLLKLDEFGLI-ARLDLAHVVDGPESKQISALSKIRVGQKLNDLLVLDIQRA 804

Query: 611 NLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
             L+  SA+ SL  +A+Q  LP+    I   + V G+V NI   G F+ FLG + G  P+
Sbjct: 805 RRLIKVSARASLKKAAKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEFLGGIIGLVPK 864

Query: 667 ----SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
                + V+    D+ K+  V  +V S    ++ +  R  LS+K S  +S 
Sbjct: 865 RLLADENVNKPDYDMVKSQLVTATVHS----IDRDFQRFILSMKPSEATSA 911



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 142/315 (45%), Gaps = 39/315 (12%)

Query: 416  KKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 473
            K F +G+ L   V  V ++  R+ +T K+    SKL    S+ + +  +I  G +TK+ +
Sbjct: 1096 KHFPIGSALKVHVAAVDTEKGRLDLTAKQR--SSKL----SFEDISVGMILPGRVTKVTE 1149

Query: 474  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 533
                ++  + V G     +L  D      ++YH   V++  ++    A+++I+LS  ++P
Sbjct: 1150 KQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANKKISLS--LRP 1207

Query: 534  TRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLA 580
            ++V    L            +K+  +V G V  V  + + V +   G+     +    L+
Sbjct: 1208 SKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTL---GHDVTAYVRVSDLS 1264

Query: 581  DHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 635
            D     + +K   K  ++ DQL+     V+D E   L +S K S+++   + P     + 
Sbjct: 1265 D-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLK 1318

Query: 636  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
                V G V  + E G F+       ++G   RS+  D +  D    Y  G  V++ I+ 
Sbjct: 1319 VGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKIIK 1378

Query: 694  VNSETGRITLSLKQS 708
            ++ E+G+I+ SLK S
Sbjct: 1379 IDRESGKISFSLKAS 1393



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 169/386 (43%), Gaps = 59/386 (15%)

Query: 61   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 107
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 992  FFRPKQLISARILGIHDARSHKFLPISHRSGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1051

Query: 108  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 161
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1052 GSTWVGFVNNVADDCLWINLS-PNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAA 1110

Query: 162  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
            +D  +  + L++   + SK   +D   IS+ +++PG     RV  + E  V++       
Sbjct: 1111 VDTEKGRLDLTAKQRS-SKLSFED---ISVGMILPG-----RVTKVTEKQVIMQLSDTVV 1161

Query: 222  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 277
            G V++  L + +    PT   KND      + A ++ VD  ++ + L+L P  + + + P
Sbjct: 1162 GAVNLIDLADDYSKANPTVYHKNDV-----LRACVVGVDKANKKISLSLRPSKVLSSSLP 1216

Query: 278  ---------SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
                       +KV D+  +  V RV D GL + L    T     AYV +SD+++  +++
Sbjct: 1217 VQDPEITSMKQLKVNDVV-RGFVKRVADSGLFVTLGHDVT-----AYVRVSDLSDSYLKE 1270

Query: 328  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAV 384
             +  ++    V+ R+      +G     LK S  +       T  D+K G  V GKV  V
Sbjct: 1271 WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQFVTGKVRKV 1330

Query: 385  DSFGA--IVQFPGGVKALCPLPHMSE 408
            + FGA  ++     +  LC    M++
Sbjct: 1331 EEFGAFIVIDRSANISGLCHRSEMAD 1356



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 159/371 (42%), Gaps = 33/371 (8%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIF 62
            + +  G    G V  V +  L I L   +RG  R  DA D + L  ++E +        F
Sbjct: 1047 EQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKH--------F 1098

Query: 63   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
             +G  +   V  +D +K   G+  +    R S     LS E +  GM+L   V  + +  
Sbjct: 1099 PIGSALKVHVAAVDTEK---GRLDLTAKQRSS----KLSFEDISVGMILPGRVTKVTEKQ 1151

Query: 123  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDT 177
             I+     +  G +   +LA++      P +     +L+  V  +D+  K + LS  P  
Sbjct: 1152 VIMQLS-DTVVGAVNLIDLADDYS-KANPTVYHKNDVLRACVVGVDKANKKISLSLRPSK 1209

Query: 178  V--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
            V  S    +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L +++  
Sbjct: 1210 VLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDSY-L 1268

Query: 236  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKV 291
              WK+ +   + V  R+  VDP    + ++L   +L    +AP +   +KVG  +   KV
Sbjct: 1269 KEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQ-FVTGKV 1327

Query: 292  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 351
             +V+     ++   S  +S   +   S++A++ V      Y+EG  V+ +I+      G 
Sbjct: 1328 RKVEEFGAFIVIDRSANISGLCHR--SEMADKRVDDARTLYEEGDLVKAKIIKIDRESGK 1385

Query: 352  ATGILKASAFE 362
             +  LKAS F+
Sbjct: 1386 ISFSLKASHFK 1396


>gi|256271623|gb|EEU06665.1| Rrp5p [Saccharomyces cerevisiae JAY291]
 gi|323347043|gb|EGA81319.1| Rrp5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1729

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 380/1310 (29%), Positives = 626/1310 (47%), Gaps = 185/1310 (14%)

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 623
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 624  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 678  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 738  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 791
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 792  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 846
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 847  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 901
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 902  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 951
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKGVKK 907

Query: 952  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1002
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1003 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1060
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1061 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
             VDI   NM T I   D + GR+ KI      +++ +G  + G    T+     ++D   
Sbjct: 1077 HVDI---NMST-IKVDDELPGRVLKIAEKY--VLLDLGNKVTGISFITD----ALNDFSL 1126

Query: 1180 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1239
               E   D ++       +   VL +    +    +ELSLRS+     S  S        
Sbjct: 1127 TLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH------- 1171

Query: 1240 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1299
                     EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +K + 
Sbjct: 1172 ---------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYK 1222

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVIGQIK 1352
              + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  G IK
Sbjct: 1223 PMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFEGTIK 1273

Query: 1353 RVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
             V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK++ISL
Sbjct: 1274 NVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISL 1333

Query: 1412 GMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL 1471
             +K+S+F  +A   +++S   +    +++   +   ++ ++     D D ES+ G     
Sbjct: 1334 SLKASHFSKEA---ELASTTTTTTTADQLEKEDEDEVMADA--GFNDSDSESDIGDQ--- 1385

Query: 1472 AQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK----EE 1526
                           + D +P+   +G+S + G    A  +D+        +++    E 
Sbjct: 1386 ------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQEDFTEN 1433

Query: 1527 REQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEK 1579
            ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++++EK
Sbjct: 1434 KKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEK 1493

Query: 1580 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1639
            AR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D   +H 
Sbjct: 1494 ARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSYTIHT 1551

Query: 1640 ALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQRALLS 1697
             LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  AL +
Sbjct: 1552 KLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKA 1611

Query: 1698 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1757
            LP+  HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D   +
Sbjct: 1612 LPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKV 1671

Query: 1758 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
              LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1672 EDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  176 bits (445), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 284/1267 (22%), Positives = 542/1267 (42%), Gaps = 178/1267 (14%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------------------LARAADAL 42
            + +  G  L G ++ + ++DL I    G+ G                     +    DA 
Sbjct: 114  KTLKNGSSLLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAA 173

Query: 43   D----PILDNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGK 84
            D     + D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K
Sbjct: 174  DEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKK 233

Query: 85   RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 144
            ++I L++  S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +    
Sbjct: 234  KRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNF 292

Query: 145  SGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 203
              +   PG +  G + +  DR+   + +++D    S    K  +  SID ++PG +V   
Sbjct: 293  EKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLL 344

Query: 204  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 263
             +SI +NG+        +G V++ HL+ TF   + K+ +     +  RI+          
Sbjct: 345  CESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAIGSSIRCRII---------- 393

Query: 264  LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------S 310
                   L N+   S  KV  + +   +++++  L     + + P+             S
Sbjct: 394  -----ACLENK---SGDKVLILSNLPHILKLEDALRSTEGLDAFPIGYTFESCSIKGRDS 445

Query: 311  TPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 365
               Y+ + D     V    V ++E      S    R+LG+  ++ +          +   
Sbjct: 446  EYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKY 501

Query: 366  FTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
               +D+  G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G++
Sbjct: 502  LRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSK 561

Query: 424  LVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHG 475
            +  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +       T   +   + +G
Sbjct: 562  VKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNG 621

Query: 476  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
            C + F+ G+ GF P SE+       P     +GQ V  +++      RRI  +  +   +
Sbjct: 622  CIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQ 681

Query: 536  VSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVM 589
             ++     +++V   ++++  V   T ++V+V +   G  +G I   HL+D  +E     
Sbjct: 682  AAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQ 740

Query: 590  KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGY 643
               ++ G E   L++  D  +    +S K SLI  A++  LP    D   ++ +  +H Y
Sbjct: 741  LKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAY 800

Query: 644  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703
            + +I + G FV F G+  G    S AVD +  D+SK +Y+ QSV   +L  + +  +  L
Sbjct: 801  IKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLL 860

Query: 704  SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESN 761
            SLK                 +E+ +          S +K  +   IGS+++ K+   + N
Sbjct: 861  SLKAPKVKEEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKGVKKN 908

Query: 762  DFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVD 810
               V+++   H         D Y  IT  +   +  +   VI+  I+   DV K+ + + 
Sbjct: 909  QLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLP 967

Query: 811  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYN 869
            ++ K         +    + + K+   ++ +++ + Q +   V     N+L L++ P   
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLK 1027

Query: 870  HSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSK 928
              I    ++D N   F +    N +SV     AL    ++  R    + AI ++    + 
Sbjct: 1028 ARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN- 1081

Query: 929  RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 988
                 S+  V   +   + +I    + L  G    G   IT+  +D S  ++  F + KI
Sbjct: 1082 ----MSTIKVDDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KI 1136

Query: 989  GQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
               +   +++  + NK         ELS++ +      I S       D+  G+ V G V
Sbjct: 1137 NNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS-----HEDLKQGEIVDGIV 1184

Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
              V+++   + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++ + + 
Sbjct: 1185 KNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-IS 1241

Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRV 1164
            L LR  +     K +   +D     I  GD+  G I  +     G+ V++    ++ G  
Sbjct: 1242 LTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD--FGVFVKLDNTVNVTGLA 1294

Query: 1165 HFTELKN 1171
            H TE+ +
Sbjct: 1295 HITEIAD 1301



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 138/331 (41%), Gaps = 39/331 (11%)

Query: 101  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 153
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISIDLLVPGMMVSTRVQSILENGV 212
             LQ  V SIDR    V      + + K  V  ++  I +D  +PG     RV  I E  V
Sbjct: 1055 ALQVKVASIDREHGFV------NAIGKSHVDINMSTIKVDDELPG-----RVLKIAEKYV 1103

Query: 213  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNP 268
            +L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L  
Sbjct: 1104 LLDLGNKVTGISFITDALNDFSLT-LKEAF--EDKINNVIPTTVLSVDEQNKKIELSLRS 1160

Query: 269  YLLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 326
                 R+  SH  +K G+I D       D+G+ + L          A+V +S +++  ++
Sbjct: 1161 ATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLK 1215

Query: 327  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIA 383
            + +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  
Sbjct: 1216 EWKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKN 1274

Query: 384  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
            V  FG  V+    V  +  L H++E    KP
Sbjct: 1275 VTDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|67523381|ref|XP_659751.1| hypothetical protein AN2147.2 [Aspergillus nidulans FGSC A4]
 gi|40745035|gb|EAA64191.1| hypothetical protein AN2147.2 [Aspergillus nidulans FGSC A4]
 gi|259487526|tpe|CBF86270.1| TPA: rRNA biogenesis protein RRP5, putative (AFU_orthologue;
            AFUA_2G16040) [Aspergillus nidulans FGSC A4]
          Length = 1780

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 447/1765 (25%), Positives = 801/1765 (45%), Gaps = 275/1765 (15%)

Query: 186  LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV--------------------- 224
            ++G+S   LVPG ++  +V SI  + + +S     TG V                     
Sbjct: 144  IEGLSFKRLVPGALILGQVSSINAHNIGISLPNNLTGYVPLTSVSKTLESKIEKMLEEDE 203

Query: 225  ----------DIFHLQN---TFPTTNWKNDYNQHKKVNARI-LFVDPTSRAVGLTLNPYL 270
                      D F+L     T+  +      +   K   RI L +DP S   GL     +
Sbjct: 204  DSDEEEFDLHDYFYLGQYLRTYVVSVGNKSADASSKSKKRIELSIDPRSANTGLQKTDLV 263

Query: 271  LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
            ++     S V V D              GL++D+         +++  ++   + R    
Sbjct: 264  VNAAVQASVVSVED-------------HGLVMDLGIEGTDVRGFMSSKEI---DPRTDYS 307

Query: 331  KYKEGSCVRVRILGFRHLEG---------LATGILKASAFEGLVFTHSDVKPGMVVKGKV 381
              KEGS     + G ++  G          ++G +K S F  +  T +   PG+  +  +
Sbjct: 308  TIKEGSVFLCMVTG-QNANGNVIKLSANLQSSGSIKKSHFLSVAPTINSFVPGVAAEILL 366

Query: 382  IAVDSFGAIVQFPGGVKALCPLPH----MSEFEIVKPGKKFKVGAELVFRVL----GVKS 433
              V S G I +  G +     L H      + ++ K   K+  GA++  R+     G + 
Sbjct: 367  TDVSSTGMIGKIMGMLDTTVDLVHSGGATGKTDLTK---KYHNGAKIKGRISCTFPGSEP 423

Query: 434  KRITVTH----KKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCFVRFYNGVQ-GF 487
             +I  +     +K   +      S  A A   +I    I  ++   G +V+  +    GF
Sbjct: 424  YKIGFSMLDHVQKFSAEGHGPNSSDDAPAISAVIPEATIVNVDPGLGVYVKIGSTKHMGF 483

Query: 488  APRSELGLDPGCEPSSMYH----VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
               S L  D   E  S  H    VG   + R++         +LSF  K   V     ++
Sbjct: 484  VHVSRLA-DGQVETISSDHGPFKVGTTHEARVVGYSAIDNLYSLSFERK---VINQPFLR 539

Query: 544  LGSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 594
            L  +  G V  VT   V+V           +  G + G IP+ H AD        K   +
Sbjct: 540  LEDVTLGAVVKVTITKVLVGESGVTGLIVSLTDGIT-GFIPSVHFADTRLQFPEKK--FR 596

Query: 595  PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
             G     ++L ++ E   + L+ K SL+N+   +  D   I P +   G + NI+  G  
Sbjct: 597  EGLSITARVLSVNLEKREVRLTLKKSLLNTEAAVWKDYRDILPGAQSPGTIINILPNGAV 656

Query: 654  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
            V+F G + G+   S+  +    D S+ + +GQ V  + L+V++  G++++S +       
Sbjct: 657  VQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHALNVDASQGKLSVSCR------- 709

Query: 714  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 773
            D S + + +                +  K ++    G  + G V E +D  V++  E+  
Sbjct: 710  DQSLLADSYR---------------TAFKTIQP---GQSVTGTVFEKSDDYVLLRLEDLG 751

Query: 774  DVYGFITHHQLA-GATVESGSVI----------QAAILDVAKAERLVDLSLKTVFIDRFR 822
             +   +   Q+A G+  +  S +          +  +LDV +A RL+ ++ +        
Sbjct: 752  GLVARLGVGQVADGSASKRSSTLSKIRVGQKLNELVVLDVHRAHRLIHVTNRA------- 804

Query: 823  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA-----SV 877
               S ++A K+       +DL     V   +  +    L +        IG         
Sbjct: 805  ---SLKKATKEGNMPSTFEDLREGAEVTGFIRNITPTGLFVQF--LGGLIGLVPRRLVGS 859

Query: 878  SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD 937
             D N  +F +  F   Q V ATV +L +     R +L +     T     K + KKS+ +
Sbjct: 860  EDSNKSEFGKANF---QVVSATVHSLDTDFR--RFILSMDPAEATHAGPKKESTKKSAKE 914

Query: 938  ------------------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 973
                                    VG +++ +I  +K  ++ +K      GRI ++EV D
Sbjct: 915  TAAAGDESLANPVDETLKAKSDITVGRVLKCKINSVKGTQINVKLADNVQGRIDVSEVFD 974

Query: 974  DKSNVVE--NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTV 1022
               ++ +      +F+ GQ +TA+++   +              K  ++ELS+KP  +  
Sbjct: 975  SWEDISDKKQPLKHFRPGQVITAKVLGLHDARSYTYLPISHRTGKFNVYELSMKPKFVK- 1033

Query: 1023 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1082
            ++  + L  ++  V  G    G+V  V N++  +++S +++ +L  +D++ + S L + +
Sbjct: 1034 ADNATPLTIDQ--VQAGSSSFGFVNNVSNDFFWVSLSPNVRGRLRFIDASDDISLLADIE 1091

Query: 1083 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1142
            +++ IG A+   V  ++ EK  + L  R       +++  ++ D++      G ++  R+
Sbjct: 1092 KQYPIGCALKFRVTGVDAEKGHIDLSAR-------ERSESLTFDDLSV----GMVLPTRV 1140

Query: 1143 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            +++      +++Q+   L G V       I ++D  S     + DP   Y + + V+  +
Sbjct: 1141 TRVTDKQ--VIMQLNNTLVGAVDL-----INMADDFS-----KADP-HAYHKNEVVRSCI 1187

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            + + +  R    + LSLR S           LS+ +      +  +E +  N I++G+V+
Sbjct: 1188 IGVDKANR---KIHLSLRPS---------KVLSSSLPVQDPEITSMEQVKVNDIIRGFVR 1235

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             V+  G F+ +   + A + +S+LSD Y++  +  F +G+LV GRV  V+P +K+++++L
Sbjct: 1236 QVSDGGLFVTVGHNIVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSL 1295

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE-NTNLVGLCHVSELSEDH 1381
            K S    + ++ I  L +L  G IV G++++VE +G FI I+ ++N+ GLCH +E+++  
Sbjct: 1296 KDSVLDPSYKAPIT-LYDLKPGQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTR 1354

Query: 1382 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVG 1441
            V++  T+Y  G+ VK K+LKVD+++ +IS G+K+SYF +DA++ + S  E+SD     + 
Sbjct: 1355 VEDARTLYEEGDAVKAKVLKVDRDQGKISFGLKASYFNDDAED-ESSGNEDSDSDGVSLD 1413

Query: 1442 SYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD-------- 1493
            S+    L E+      D    S  G  L        +        + DE  +        
Sbjct: 1414 SFGGVELEESGESDEDDDSDVSMGGMDLEDESGSEESEEEEEGDAVVDEPTNKIRKGGLG 1473

Query: 1494 ---MD-NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDE 1549
                D NG +Q+    DEA   D  +     +K+++ R+ EI       L+ + P++  +
Sbjct: 1474 AVGFDWNGNTQDD--EDEAMQSDSDDEDKGIQKKRKHRQPEILVDRTGELDANGPQSVAD 1531

Query: 1550 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1609
            +ERL+   PNSS +W+KYMAF L + +VEKAR IAERAL+TI I ++ EKLNIWVA  NL
Sbjct: 1532 YERLLLGEPNSSLLWLKYMAFQLELGEVEKAREIAERALRTITIGQDTEKLNIWVAMLNL 1591

Query: 1610 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKH 1667
            EN YG+  ++ + +VF+RA QY D ++++  L  +Y ++ +N+ ADEL    +KK  F +
Sbjct: 1592 ENTYGD--DDTLEEVFKRACQYNDTQEIYERLTSIYIQSGKNEKADELFKTALKKKVFPN 1649

Query: 1668 SCKVWLRRVQRL---LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADR 1722
            S K ++     L   +     G + ++ RAL SLP++ H++  S+ A LEF+  NG  +R
Sbjct: 1650 SPKFFINYATFLYDTMAAPDRG-RGLLSRALQSLPKNTHVETTSKFAQLEFRSPNGDVER 1708

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
            GR++FEG+LS +PKR DLW++ LD EI+ GDV+  R                 F FKK+L
Sbjct: 1709 GRTVFEGLLSSFPKRVDLWNVLLDLEIKNGDVEQAR-----------------FFFKKWL 1751

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
            ++E+  G+E+ +E +K KA EYV+S
Sbjct: 1752 DFEEKKGDEKTVEEIKAKAAEYVKS 1776



 Score =  146 bits (369), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 170/749 (22%), Positives = 326/749 (43%), Gaps = 62/749 (8%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE---------ANEDNLLP 59
           G  + G V+ +N  ++ I LP  L G      ++   L+++IE           E+  L 
Sbjct: 155 GALILGQVSSINAHNIGISLPNNLTGYVPLT-SVSKTLESKIEKMLEEDEDSDEEEFDLH 213

Query: 60  TIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             F++GQ +   V+ + +   D     K++I LS+       GL    +     + A V 
Sbjct: 214 DYFYLGQYLRTYVVSVGNKSADASSKSKKRIELSIDPRSANTGLQKTDLVVNAAVQASVV 273

Query: 117 SIEDHGYILHFGL--PSFTGFL------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKV 168
           S+EDHG ++  G+      GF+      PR + +      +K G +   +V   +    V
Sbjct: 274 SVEDHGLVMDLGIEGTDVRGFMSSKEIDPRTDYST-----IKEGSVFLCMVTGQNANGNV 328

Query: 169 VYLSSDPDTVSKCVTKDLKGI--SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 226
           + LS++  +           +  +I+  VPG+     +  +   G++   +     TVD+
Sbjct: 329 IKLSANLQSSGSIKKSHFLSVAPTINSFVPGVAAEILLTDVSSTGMIGKIMGMLDTTVDL 388

Query: 227 FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTL----NPYLLHNRAPPSH- 279
            H       T+    Y+   K+  RI    P S    +G ++      +      P S  
Sbjct: 389 VHSGGATGKTDLTKKYHNGAKIKGRISCTFPGSEPYKIGFSMLDHVQKFSAEGHGPNSSD 448

Query: 280 --VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKE 334
               +  +  ++ +V VD GLG+ + I ST      +V +S +A+ +V  +      +K 
Sbjct: 449 DAPAISAVIPEATIVNVDPGLGVYVKIGST--KHMGFVHVSRLADGQVETISSDHGPFKV 506

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK---GKVIAVDS--FGA 389
           G+    R++G+  ++ L +   +            DV  G VVK    KV+  +S   G 
Sbjct: 507 GTTHEARVVGYSAIDNLYSLSFERKVINQPFLRLEDVTLGAVVKVTITKVLVGESGVTGL 566

Query: 390 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS 447
           IV    G+    P  H ++  +  P KKF+ G  +  RVL V  + + + +T KK+L+ +
Sbjct: 567 IVSLTDGITGFIPSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKKSLLNT 626

Query: 448 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 507
           + A+   Y +      + G I  I  +G  V+FY  V+G+   SE+      +PS  + +
Sbjct: 627 EAAVWKDYRDILPGAQSPGTIINILPNGAVVQFYGNVRGWLSVSEMSEAYIKDPSQHFKL 686

Query: 508 GQVVKCRIMSSIPASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY 563
           GQVV    ++   +  ++++S     ++  +  +    ++ G  V+G V   + + V++ 
Sbjct: 687 GQVVNVHALNVDASQGKLSVSCRDQSLLADSYRTAFKTIQPGQSVTGTVFEKSDDYVLLR 746

Query: 564 VIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSL 620
           +   G     +    +AD      +   S I+ G + ++L+VLD   ++ L+  + + SL
Sbjct: 747 LEDLGGLVARLGVGQVADGSASKRSSTLSKIRVGQKLNELVVLDVHRAHRLIHVTNRASL 806

Query: 621 INSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS--KAVDGQRAD 676
             + ++  +PS    +   + V G++ NI  TG FV+FLG L G  PR    + D  +++
Sbjct: 807 KKATKEGNMPSTFEDLREGAEVTGFIRNITPTGLFVQFLGGLIGLVPRRLVGSEDSNKSE 866

Query: 677 LSKTYYVGQSVRSNILDVNSETGRITLSL 705
             K  +  Q V + +  ++++  R  LS+
Sbjct: 867 FGKANF--QVVSATVHSLDTDFRRFILSM 893



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 179/403 (44%), Gaps = 49/403 (12%)

Query: 62   FHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQEG 108
            F  GQ+++  VL L D +           GK  ++ LS++   +       L+++ VQ G
Sbjct: 989  FRPGQVITAKVLGLHDARSYTYLPISHRTGKFNVYELSMKPKFVKADNATPLTIDQVQAG 1048

Query: 109  MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRSI 162
                 +V ++ +  + +    P+  G L   + +++  +  D++     G  L+  V  +
Sbjct: 1049 SSSFGFVNNVSNDFFWVSLS-PNVRGRLRFIDASDDISLLADIEKQYPIGCALKFRVTGV 1107

Query: 163  DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 222
            D  +  + LS+   + S         ++ D L  GM++ TRV  + +  V++       G
Sbjct: 1108 DAEKGHIDLSARERSES---------LTFDDLSVGMVLPTRVTRVTDKQVIMQLNNTLVG 1158

Query: 223  TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP----- 277
             VD+ ++ + F   +  + Y++++ V + I+ VD  +R + L+L P  + + + P     
Sbjct: 1159 AVDLINMADDFSKAD-PHAYHKNEVVRSCIIGVDKANRKIHLSLRPSKVLSSSLPVQDPE 1217

Query: 278  ----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 333
                  VKV DI  +  V +V  G GL + +    V   A++ ISD+++  +++ +  ++
Sbjct: 1218 ITSMEQVKVNDII-RGFVRQVSDG-GLFVTVGHNIV---AFIRISDLSDSYLKEWKDSFQ 1272

Query: 334  EGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAI 390
             G  V+ R+             LK S  +       T  D+KPG +V GKV  V+ FGA 
Sbjct: 1273 VGQLVKGRVTLVDPENKKLQMSLKDSVLDPSYKAPITLYDLKPGQIVTGKVRKVEQFGAF 1332

Query: 391  VQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
            +   G   V  LC    M++  +      ++ G  +  +VL V
Sbjct: 1333 IVIDGSSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKV 1375



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 168/400 (42%), Gaps = 41/400 (10%)

Query: 6    ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHV 64
            + AG   +G V  V+     + L   +RG  R  DA D I L  +IE          + +
Sbjct: 1045 VQAGSSSFGFVNNVSNDFFWVSLSPNVRGRLRFIDASDDISLLADIEKQ--------YPI 1096

Query: 65   GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
            G  +   V  +D +K  I      LS R     + L+ + +  GMVL   V  + D   I
Sbjct: 1097 GCALKFRVTGVDAEKGHID-----LSARER--SESLTFDDLSVGMVLPTRVTRVTDKQVI 1149

Query: 125  LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS----IDRTRKVVYLSSDPDTV-- 178
            +     +  G +   N+A++             VVRS    +D+  + ++LS  P  V  
Sbjct: 1150 MQLN-NTLVGAVDLINMADDFSKADPHAYHKNEVVRSCIIGVDKANRKIHLSLRPSKVLS 1208

Query: 179  SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 238
            S    +D +  S++ +    ++   V+ + + G+ ++        + I  L +++    W
Sbjct: 1209 SSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVTVGHNIVAFIRISDLSDSY-LKEW 1267

Query: 239  KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYD-------QSKV 291
            K+ +   + V  R+  VDP ++ + ++L   +L     PS+     +YD         KV
Sbjct: 1268 KDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVLD----PSYKAPITLYDLKPGQIVTGKV 1323

Query: 292  VRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 350
             +V++    ++   S+ VS   + T ++D   E+ R L   Y+EG  V+ ++L     +G
Sbjct: 1324 RKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTL---YEEGDAVKAKVLKVDRDQG 1380

Query: 351  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 390
              +  LKAS F       S         G  +++DSFG +
Sbjct: 1381 KISFGLKASYFNDDAEDESSGNEDSDSDG--VSLDSFGGV 1418


>gi|190408455|gb|EDV11720.1| rRNA biogenesis protein RRP5 [Saccharomyces cerevisiae RM11-1a]
          Length = 1729

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 378/1314 (28%), Positives = 627/1314 (47%), Gaps = 193/1314 (14%)

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 623
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 624  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 678  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 738  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 791
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 792  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 846
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 847  QTVNAIVE-----IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 901
              + +I +          ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFIAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 902  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 951
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 952  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1002
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1003 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1060
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1061 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
             VDI   N+ T I   D + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NVST-IKVDDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1180 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1235
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1348
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1349 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
            G IK V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK+
Sbjct: 1270 GTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329

Query: 1408 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1467
            +ISL +K+S+F  +A   +++S   +    +++   +   ++ ++     D D ES+ G 
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTADQLEKEDEDEVMADA--GFNDSDSESDIGD 1384

Query: 1468 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1524
                               + D +P+   +G+S + G    A  +D+        +++  
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429

Query: 1525 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1575
              E ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489

Query: 1576 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
            ++EKAR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D  
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547

Query: 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1693
             +H  LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607

Query: 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1753
            AL +LP+  HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKD 1667

Query: 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
               +  LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  174 bits (442), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 283/1267 (22%), Positives = 542/1267 (42%), Gaps = 178/1267 (14%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------------------LARAADAL 42
            + +  G  L G ++ + ++DL I    G+ G                     +    DA 
Sbjct: 114  KTLKNGSSLLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAA 173

Query: 43   D----PILDNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGK 84
            D     + D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K
Sbjct: 174  DEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKK 233

Query: 85   RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 144
            ++I L++  S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +    
Sbjct: 234  KRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNF 292

Query: 145  SGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 203
              +   PG +  G + +  DR+   + +++D    S    K  +  SID ++PG +V   
Sbjct: 293  EKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLL 344

Query: 204  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 263
             +SI +NG+        +G V++ HL+ TF   + K+ +     +  RI+          
Sbjct: 345  CESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAIGSSIRCRII---------- 393

Query: 264  LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------S 310
                   L N+   S  KV  + +   +++++  L     + + P+             S
Sbjct: 394  -----ACLENK---SGDKVLILSNLPHILKLEDALRSTEGLDAFPIGYTFESCSIKGRDS 445

Query: 311  TPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 365
               Y+ + D     V    V ++E      S    R+LG+  ++ +          +   
Sbjct: 446  EYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKY 501

Query: 366  FTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
               +D+  G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G++
Sbjct: 502  LRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSK 561

Query: 424  LVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHG 475
            +  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +       T   +   + +G
Sbjct: 562  VKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNG 621

Query: 476  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
            C + F+ G+ GF P SE+       P     +GQ V  +++      RRI  +  +   +
Sbjct: 622  CIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQ 681

Query: 536  VSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVM 589
             ++     +++V   ++++  V   T ++V+V +   G  +G I   HL+D  +E     
Sbjct: 682  AAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQ 740

Query: 590  KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGY 643
               ++ G E   L++  D  +    +S K SLI  A++  LP    D   ++ +  +H Y
Sbjct: 741  LKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAY 800

Query: 644  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703
            + +I + G F+ F G+  G    S AVD +  D+SK +Y+ QSV   +L  + +  +  L
Sbjct: 801  IKSISDKGLFIAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLL 860

Query: 704  SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESN 761
            SLK                 +E+ +          S +K  +   IGS+++ K+   + N
Sbjct: 861  SLKAPKVKEEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKSVKKN 908

Query: 762  DFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVD 810
               V+++   H         D Y  IT  +   +  +   VI+  I+   DV K+ + + 
Sbjct: 909  QLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLP 967

Query: 811  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYN 869
            ++ K         +    + + K+   ++ +++ + Q +   V     N+L L++ P   
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLK 1027

Query: 870  HSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSK 928
              I    ++D N   F +    N +SV     AL    ++  R    + AI ++    + 
Sbjct: 1028 ARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN- 1081

Query: 929  RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 988
                 S+  V   +   + +I    + L  G    G   IT+  +D S  ++  F + KI
Sbjct: 1082 ----VSTIKVDDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KI 1136

Query: 989  GQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
               +   +++  + NK         ELS++ +      I S       D+  G+ V G V
Sbjct: 1137 NNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS-----HEDLKQGEIVDGIV 1184

Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
              V+++   + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++ + + 
Sbjct: 1185 KNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-IS 1241

Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRV 1164
            L LR  +     K +   +D     I  GD+  G I  +     G+ V++    ++ G  
Sbjct: 1242 LTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD--FGVFVKLDNTVNVTGLA 1294

Query: 1165 HFTELKN 1171
            H TE+ +
Sbjct: 1295 HITEIAD 1301



 Score = 48.9 bits (115), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 138/331 (41%), Gaps = 39/331 (11%)

Query: 101  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 153
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISIDLLVPGMMVSTRVQSILENGV 212
             LQ  V SIDR    V      + + K  V  ++  I +D  +PG     RV  I E  V
Sbjct: 1055 ALQVKVASIDREHGFV------NAIGKSHVDINVSTIKVDDELPG-----RVLKIAEKYV 1103

Query: 213  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNP 268
            +L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L  
Sbjct: 1104 LLDLGNKVTGISFITDALNDFSLT-LKEAF--EDKINNVIPTTVLSVDEQNKKIELSLRS 1160

Query: 269  YLLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 326
                 R+  SH  +K G+I D       D+G+ + L          A+V +S +++  ++
Sbjct: 1161 ATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLK 1215

Query: 327  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIA 383
            + +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  
Sbjct: 1216 EWKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKN 1274

Query: 384  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
            V  FG  V+    V  +  L H++E    KP
Sbjct: 1275 VTDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|414883928|tpg|DAA59942.1| TPA: hypothetical protein ZEAMMB73_646840 [Zea mays]
          Length = 376

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/331 (63%), Positives = 266/331 (80%), Gaps = 14/331 (4%)

Query: 1483 LEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1542
            LE N+ +   ++ NG   N   +D          +  KK+ +++RE EI A EER L++D
Sbjct: 50   LEDNISNTCLEIANGTEANAKKSD----------KQLKKEARKQRELEISAMEERALQED 99

Query: 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1602
             P+TPD+FE+LVRSSPNSSF+WIKYMA +L +ADV+KAR++AERAL+TI  REE EKLN+
Sbjct: 100  IPQTPDDFEKLVRSSPNSSFIWIKYMATLLDLADVKKARAVAERALKTIIPREEEEKLNV 159

Query: 1603 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1662
            WVAYFNLENEYG+P E+AV KVFQRALQYCDPKK+HLALL +YERTEQ +LADELL ++ 
Sbjct: 160  WVAYFNLENEYGSPREDAVKKVFQRALQYCDPKKLHLALLAMYERTEQYELADELLDRIT 219

Query: 1663 KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1720
            K+FK SCK+WL R+Q  LKQ +  E ++A+V RALLSLP  K IKF+SQTAILEFK GV 
Sbjct: 220  KRFKTSCKIWLCRIQFALKQGKDVEYIKAIVNRALLSLPHRKRIKFLSQTAILEFKCGVP 279

Query: 1721 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS-LSLPPKKMKFLFK 1779
            + GRS FE IL EYPKRTDLWS+YLDQEIRLGDV++IR LFER ++ L+LPPKKM+FLFK
Sbjct: 280  EEGRSRFELILREYPKRTDLWSVYLDQEIRLGDVEVIRALFERRVACLTLPPKKMQFLFK 339

Query: 1780 KYLEYEKSVGEE-ERIEYVKQKAMEYVESTL 1809
            KYL +EKS+G++ ERI+ V+QKA+EYV+S+L
Sbjct: 340  KYLNFEKSLGKDNERIQLVQQKAIEYVQSSL 370


>gi|156120853|ref|NP_001095573.1| protein RRP5 homolog [Bos taurus]
 gi|224493288|sp|A7MB10.1|RRP5_BOVIN RecName: Full=Protein RRP5 homolog; AltName: Full=Programmed cell
            death protein 11
 gi|154425541|gb|AAI51278.1| PDCD11 protein [Bos taurus]
          Length = 1874

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 395/1398 (28%), Positives = 652/1398 (46%), Gaps = 159/1398 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +L I LP GL+G  +  +  D   +  NE  A E+ L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQDLV 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  LD  K    K+ + LSL    + + LS ET++ GM+LT  V 
Sbjct: 138  GLPELFSPGMLVRCVVSSLDTTKG--SKKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +  +R VV L
Sbjct: 196  SLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGVVTL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L FL++F+G VD  HL  
Sbjct: 256  SIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     ++V A +L V P +RAV L+L P  L    P + +   ++G + D 
Sbjct: 316  KKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V       G    +      T AY   + ++  +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D+KPG +VKGKV+ +   G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              I  P KK+ VG E+  RVL    K+K++ +T KKTLV+SKL  ++ Y +A   L THG
Sbjct: 488  ILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  PR EL  +   +P S+++ GQVVK  +++  P+  R+ 
Sbjct: 548  FILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--KPTRVSEDDLVKLGSLVSG--VVDV----VTPNAVVVYVIAKGYSKGTIPTEH 578
            LSF +   P +  E    K    VS   + DV     T + + V V+      G +PT H
Sbjct: 608  LSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIP-GFLPTAH 666

Query: 579  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 636
            L+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P   S IHP
Sbjct: 667  LSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEIHP 726

Query: 637  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              ++ G+V NI + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ 
Sbjct: 727  GMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDE 786

Query: 697  ETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSV 752
            E  R+ LSL+ S C+  D +          LEE+  +     +  S L + +     G  
Sbjct: 787  EKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMA 846

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLV 809
            ++ +V E  + G V+ F E   V G +   + +  AG  +E G   +A IL+V   +  V
Sbjct: 847  LDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKLEV 904

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    +        NR+A+K K+  +          + AIV+ ++E++ V SL E  
Sbjct: 905  HVSLCHDLV--------NRKAKKLKKGSD----------LQAIVQHLEESFAVASLVETG 946

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 947  HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVTG--LLLAIEGPAAKRTMRQT 1004

Query: 929  RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 1005 RKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHAS 1064

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKP 1017
             + DD   V  +  +  K+G+ VTAR+I      DMK   FL            ELS++P
Sbjct: 1065 HILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRP 1120

Query: 1018 SML------TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFIL 1069
            S L      T++      L +      GQ VT ++  Y +  +W  + I+  ++ ++ +L
Sbjct: 1121 SELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKKYNMVKKWLEVEIAPDIRGRIPLL 1180

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK--LLRLVLRPFQDGISDKTVDISNDN 1127
             ++     L+   ++F IG+A+   V+   +  K  L   ++ P +              
Sbjct: 1181 LTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHK-------------- 1226

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
                + +G++  GR+ K+ +   GL V      +GRV    +    VSD  S      F 
Sbjct: 1227 ----LKKGEVAMGRVVKV-TPKEGLTVSFP---FGRVGRVSM--FHVSDSYSETHLEDFV 1276

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
            P       Q V+C VL  +  V     + LSLRS     S TN    S   D     +  
Sbjct: 1277 P------QQVVRCYVLSAATPV-----LTLSLRS-----SRTNPETKSKITDP---EINS 1317

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLV 1304
            IEDL    +++G+VK+V   G  + L   +       ++S  +    +P ++  P GKL+
Sbjct: 1318 IEDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLL 1377

Query: 1305 AGRVLSVEPLSKRVEVTL 1322
              +VL +      VE++L
Sbjct: 1378 TAKVLRLNHQESLVELSL 1395



 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 146/328 (44%), Positives = 220/328 (67%), Gaps = 6/328 (1%)

Query: 1484 EVNLDDEQPDMDNGISQNQGHTDEA--KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1541
            +V LD   P +      +    DE   +   +K ++  ++ EK++ E+E+   EE L++ 
Sbjct: 1542 DVGLDTLTPALPPHGDSSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRIEEALMDP 1601

Query: 1542 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1600
               P + ++F+RLV SSP+SS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKL
Sbjct: 1602 GRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL 1661

Query: 1601 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1660
            N+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +
Sbjct: 1662 NVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNR 1719

Query: 1661 MIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1719
            M+K+F+    VW++    LL++ + E    V+QRAL  LP+ +H+  I++ A LEF+ G 
Sbjct: 1720 MLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGD 1779

Query: 1720 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1779
            A+R R++FE  LS YPKRTD+WS+Y+D  I+ G     R +FER I LSL PK+MKF FK
Sbjct: 1780 AERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFFK 1839

Query: 1780 KYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            +YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1840 RYLDYEKQHGSEKDVQAVKAKALEYVEA 1867



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1366
              +P +K++ +TLK    +T  +S++  ++   +   G    G I RV+ YG  +   N 
Sbjct: 509  LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 563

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            ++ GL    ELS ++V + E+++  G+ VKV +L  +  K R+ L  +
Sbjct: 564  DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 611



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 131/614 (21%), Positives = 237/614 (38%), Gaps = 122/614 (19%)

Query: 784  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 843
            L+  T++ G ++   +  +     LVD+ +        R     ++AQ+  R++     L
Sbjct: 179  LSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGA-----RAFLPLQKAQEYIRQKNKGAKL 233

Query: 844  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 903
             V Q +N ++E VK +  V++L     SIG++ VS                   A +   
Sbjct: 234  KVGQYLNCLIEEVKGSRGVVTL-----SIGHSEVS-------------------AAIATE 269

Query: 904  PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 963
              S T   LL                         G +V+A++ ++ PL L LKF   F 
Sbjct: 270  EQSWTLNSLL------------------------PGLVVKAQVQKVTPLGLTLKFLSFFS 305

Query: 964  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1023
            G +    ++  K+      FSN    Q V A ++         ++    LS++P  L   
Sbjct: 306  GLVDFMHLDPKKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPG 353

Query: 1024 EIGSKLLFEECDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQE 1080
               ++LL ++    +    V G+       + L   T++   +  L      ++P     
Sbjct: 354  RPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA--- 410

Query: 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1140
                F  G      ++  ++  +L  L LR     I +      +D     I  G +V G
Sbjct: 411  ----FKPGNTHKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKG 458

Query: 1141 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1200
            ++  I     G+VV++G  + G V    L +I + +P   Y  G        DE   VKC
Sbjct: 459  KVLTIKPH--GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVG--------DE---VKC 505

Query: 1201 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1260
            +VL      +      ++L+ +L              V++    +   +D  P +   G+
Sbjct: 506  RVLLCDPKAKKLM---MTLKKTL--------------VESKLPAITCYDDAKPGLQTHGF 548

Query: 1261 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1320
            +  V   GC +     +   V    LS  YV  PE  F  G++V   VL+ EP  +R+ +
Sbjct: 549  ILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLL 608

Query: 1321 TLK-TSDSRT----ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            + +  SD +      SQ +   +S   + D+ +  +++ +  GL + +   N+ G    +
Sbjct: 609  SFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKV--LEKTKD-GLKVAVLPHNIPGFLPTA 665

Query: 1376 ELSEDHVDNIETIY 1389
             LS DHV N   +Y
Sbjct: 666  HLS-DHVTNGPLLY 678



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 169/402 (42%), Gaps = 69/402 (17%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 453  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508

Query: 999  KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1054
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V +   
Sbjct: 509  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 557

Query: 1055 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--NKEKKLL--RLV 1108
            ++     ++  +    L + Y P      +  F+ G+ V   VL+   +KE+ LL  RL+
Sbjct: 558  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613

Query: 1109 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS--KILSGV-GGLVVQIGPH-LYGRV 1164
              P Q+G             Q+   +  +  G+++  K+L     GL V + PH + G +
Sbjct: 614  SDPKQEG-----------EGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFL 662

Query: 1165 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1224
                L +   + PL       +  L   D    V C  L +S   R     + +L S+++
Sbjct: 663  PTAHLSDHVTNGPL------LYHWLQTGDTLHRVLC--LSVSEE-RVLLCRKPALVSAVE 713

Query: 1225 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1284
            G                G++ +   ++ P M++ G+VKN+   G F+     L      +
Sbjct: 714  G----------------GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKA 757

Query: 1285 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
             LSD +V S    F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 758  ILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 799



 Score = 45.1 bits (105), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             + S +H G ++IG +K ++ YG+F+    + L GL   + LS+  V +    +  G+ V
Sbjct: 719  KSFSEIHPGMLLIGFVKNIKDYGVFVQFP-SGLSGLAPKAILSDKFVTSTSDHFVEGQTV 777

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
              K+  VD+EK+R+ L ++ S
Sbjct: 778  VAKVTNVDEEKQRMLLSLRLS 798


>gi|296472696|tpg|DAA14811.1| TPA: programmed cell death 11 [Bos taurus]
          Length = 1874

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 396/1398 (28%), Positives = 652/1398 (46%), Gaps = 159/1398 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +L I LP GL+G  +  +  D   +  NE  A E+ L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQDLV 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  LD  K    K+ + LSL    + + LS ET++ GM+LT  V 
Sbjct: 138  GLPELFSPGMLVRCVVSSLDTTKG--SKKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +  +R VV L
Sbjct: 196  SLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGVVTL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L FL++F+G VD  HL  
Sbjct: 256  SIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     ++V A +L V P +RAV L+L P  L    P + +   ++G + D 
Sbjct: 316  KKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V       G    +      T AY   + ++  +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D+KPG +VKGKV+ +   G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              I  P KK+ VG E+  RVL    K+K++ +T KKTLV+SKL  ++ Y +A   L THG
Sbjct: 488  ILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  PR EL  +   +P S+++ GQVVK  +++  P+  R+ 
Sbjct: 548  FILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--KPTRVSEDDLVKLGSLVSG--VVDV----VTPNAVVVYVIAKGYSKGTIPTEH 578
            LSF +   P +  E    K    VS   +VDV     T + + V V+      G +PT H
Sbjct: 608  LSFRLLSDPKQEGEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIP-GFLPTAH 666

Query: 579  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 636
            L+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P   S IHP
Sbjct: 667  LSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEIHP 726

Query: 637  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              ++ G+V NI + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ 
Sbjct: 727  GMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDE 786

Query: 697  ETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSV 752
            E  R+ LSL+ S C+  D +          LEE+  +     +  S L + +     G  
Sbjct: 787  EKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMA 846

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLV 809
            ++ +V E  + G V+ F E   V G +   + +  AG  +E G   +A IL+V   +  V
Sbjct: 847  LDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKLEV 904

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    +        NR+A+K K+  +          + AIV+ ++E++ V SL E  
Sbjct: 905  HVSLCHDLV--------NRKAKKLKKGSD----------LQAIVQHLEESFAVASLVETG 946

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 947  HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVTG--LLLAIEGPAAKRTMRQT 1004

Query: 929  RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 1005 RKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHAS 1064

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKP 1017
             + DD   V  +  +  K+G+ VTAR+I      DMK   FL            ELS++P
Sbjct: 1065 HILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRP 1120

Query: 1018 SML------TVSEIGSKLLFEECDVSIGQRVTGYVYK--VDNEWALLTISRHLKAQLFIL 1069
            S L      T++      L +      GQ VT ++ K  +  +W  + I+   + ++ +L
Sbjct: 1121 SELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKKSIMVKKWLEVEIAPDFRGRIPLL 1180

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK--LLRLVLRPFQDGISDKTVDISNDN 1127
             ++     L+   ++F IG+A+   V+   +  K  L   ++ P +              
Sbjct: 1181 LTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHK-------------- 1226

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
                + +G++  GR+ K+ +   GL V      +GRV    +    VSD  S      F 
Sbjct: 1227 ----LKKGEVAMGRVVKV-TPKEGLTVSFP---FGRVGRVSM--FHVSDSYSETHLEDFV 1276

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
            P       Q V+C VL  +  V     + LSLRS     S TN    S   D     +  
Sbjct: 1277 P------QQVVRCYVLSAATPV-----LTLSLRS-----SRTNPETKSKITDP---EINS 1317

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLV 1304
            IEDL    +++G+VK+V   G  + L   +       ++S  +    +P ++  P GKL+
Sbjct: 1318 IEDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLL 1377

Query: 1305 AGRVLSVEPLSKRVEVTL 1322
              +VL +      VE++L
Sbjct: 1378 TAKVLRLNHQESLVELSL 1395



 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 146/328 (44%), Positives = 220/328 (67%), Gaps = 6/328 (1%)

Query: 1484 EVNLDDEQPDMDNGISQNQGHTDEA--KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1541
            +V LD   P +      +    DE   +   +K ++  ++ EK++ E+E+   EE L++ 
Sbjct: 1542 DVGLDTLTPALPPHGDSSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRIEEALMDP 1601

Query: 1542 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1600
               P + ++F+RLV SSP+SS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKL
Sbjct: 1602 GRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL 1661

Query: 1601 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1660
            N+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +
Sbjct: 1662 NVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNR 1719

Query: 1661 MIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1719
            M+K+F+    VW++    LL++ + E    V+QRAL  LP+ +H+  I++ A LEF+ G 
Sbjct: 1720 MLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGD 1779

Query: 1720 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1779
            A+R R++FE  LS YPKRTD+WS+Y+D  I+ G     R +FER I LSL PK+MKF FK
Sbjct: 1780 AERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFFK 1839

Query: 1780 KYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            +YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1840 RYLDYEKQHGSEKDVQAVKAKALEYVEA 1867



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1366
              +P +K++ +TLK    +T  +S++  ++   +   G    G I RV+ YG  +   N 
Sbjct: 509  LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 563

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            ++ GL    ELS ++V + E+++  G+ VKV +L  +  K R+ L  +
Sbjct: 564  DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 611



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 129/611 (21%), Positives = 232/611 (37%), Gaps = 116/611 (18%)

Query: 784  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 843
            L+  T++ G ++   +  +     LVD+ +        R     ++AQ+  R++     L
Sbjct: 179  LSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGA-----RAFLPLQKAQEYIRQKNKGAKL 233

Query: 844  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 903
             V Q +N ++E VK +  V++L     SIG++ VS                   A +   
Sbjct: 234  KVGQYLNCLIEEVKGSRGVVTL-----SIGHSEVS-------------------AAIATE 269

Query: 904  PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 963
              S T   LL                         G +V+A++ ++ PL L LKF   F 
Sbjct: 270  EQSWTLNSLL------------------------PGLVVKAQVQKVTPLGLTLKFLSFFS 305

Query: 964  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1023
            G +    ++  K+      FSN    Q V A ++         ++    LS++P  L   
Sbjct: 306  GLVDFMHLDPKKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPG 353

Query: 1024 EIGSKLLFEECDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQE 1080
               ++LL ++    +    V G+       + L   T++   +  L      ++P     
Sbjct: 354  RPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA--- 410

Query: 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1140
                F  G      ++  ++  +L  L LR     I +      +D     I  G +V G
Sbjct: 411  ----FKPGNTHKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKG 458

Query: 1141 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1200
            ++  I     G+VV++G  + G V    L +I + +P   Y  G        DE   VKC
Sbjct: 459  KVLTIKPH--GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVG--------DE---VKC 505

Query: 1201 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1260
            +VL      +      ++L+ +L              V++    +   +D  P +   G+
Sbjct: 506  RVLLCDPKAKKLM---MTLKKTL--------------VESKLPAITCYDDAKPGLQTHGF 548

Query: 1261 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1320
            +  V   GC +     +   V    LS  YV  PE  F  G++V   VL+ EP  +R+ +
Sbjct: 549  ILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLL 608

Query: 1321 TLK-TSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1378
            + +  SD +   + +       +  G +V  ++      GL + +   N+ G    + LS
Sbjct: 609  SFRLLSDPKQEGEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPTAHLS 668

Query: 1379 EDHVDNIETIY 1389
             DHV N   +Y
Sbjct: 669  -DHVTNGPLLY 678



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 168/399 (42%), Gaps = 63/399 (15%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 453  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508

Query: 999  KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1054
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V +   
Sbjct: 509  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 557

Query: 1055 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--NKEKKLL--RLV 1108
            ++     ++  +    L + Y P      +  F+ G+ V   VL+   +KE+ LL  RL+
Sbjct: 558  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613

Query: 1109 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFT 1167
              P Q+G      +  +   +  +  G +V  ++  +     GL V + PH + G +   
Sbjct: 614  SDPKQEG------EGQSQKKKKAVSAGQLVDVKV--LEKTKDGLKVAVLPHNIPGFLPTA 665

Query: 1168 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1227
             L +   + PL       +  L   D    V C  L +S   R     + +L S+++G  
Sbjct: 666  HLSDHVTNGPL------LYHWLQTGDTLHRVLC--LSVSEE-RVLLCRKPALVSAVEG-- 714

Query: 1228 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1287
                          G++ +   ++ P M++ G+VKN+   G F+     L      + LS
Sbjct: 715  --------------GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILS 760

Query: 1288 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
            D +V S    F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 761  DKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 799



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             + S +H G ++IG +K ++ YG+F+    + L GL   + LS+  V +    +  G+ V
Sbjct: 719  KSFSEIHPGMLLIGFVKNIKDYGVFVQFP-SGLSGLAPKAILSDKFVTSTSDHFVEGQTV 777

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
              K+  VD+EK+R+ L ++ S
Sbjct: 778  VAKVTNVDEEKQRMLLSLRLS 798


>gi|115388025|ref|XP_001211518.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195602|gb|EAU37302.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1798

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 381/1394 (27%), Positives = 663/1394 (47%), Gaps = 172/1394 (12%)

Query: 499  CEPSSMYHVGQVVKCRIMSSIPASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDV 554
             E    +  G V + R++          LSF    + +P    ED  V +G++V G ++ 
Sbjct: 488  TEDHGPFQTGSVHEARVIGYNALDNLYLLSFERQVIDQPFLRLED--VTVGAVVKGKIEK 545

Query: 555  VTPNAV----VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNES 609
            +   A     ++  +A G + G +P+ H AD        K   + G     ++L ++ E 
Sbjct: 546  LLIGAGGVDGLIVSLADGIT-GLVPSMHFADAPLQFPEKK--FREGMTVSARILSVNLEK 602

Query: 610  SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
              + L+ K SL+NS   +  D   I P +   G + NI   G  V+F G + GF P S+ 
Sbjct: 603  RQIRLTLKKSLLNSESAIWKDYESIVPGAQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEM 662

Query: 670  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 729
             +    D S+ + +GQ V  + L V + +GR+ +S K       D S   E +       
Sbjct: 663  SEAYIKDPSQHFRLGQVVSVHALSVEAASGRLAVSCK-------DPSTFTESYR------ 709

Query: 730  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 789
                        K  E    G ++ G V E +   V++  +E   V      H   G+  
Sbjct: 710  ------------KAFENIRPGLLVTGTVFEKSSDDVLLKLDEFGLVARLTLEHVSDGSLS 757

Query: 790  ESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREA 839
            +  S +             +LD+ +  RL+ +S +           S ++A K+    E 
Sbjct: 758  KQNSTLSKIRVGQKLNDLLVLDIQRGRRLIKVSGRA----------SLKKAVKQGLIPEN 807

Query: 840  SKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIA 898
             +D+     V   +  I  +   V  L      +    V D N  K P       Q V A
Sbjct: 808  FEDVQEGSDVTGFIRNITLDGVFVEFLGGLIGLVPKRLVGDENITK-PSFGMTKSQIVTA 866

Query: 899  TVMAL------------PSSST-AGRLLLLLKAISETETSSSKRAKK-------KSSYDV 938
            TV ++            P+ +T AG    + K   +   S    A          S +  
Sbjct: 867  TVHSIDVDFRRFILSMNPAEATRAGAKKPVAKTTPKATPSDDAVANAVDDGVSTMSDFSF 926

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARI 996
            G +V+ ++  +K  ++ ++      GRI ++EV D   ++ +       F+  Q ++ARI
Sbjct: 927  GRVVKCKVVSVKATQVNVQLADNIQGRIDVSEVFDKLDDIKDRKQPLRFFRTKQVISARI 986

Query: 997  IAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1047
            +   +  + K         K  ++ELS+KPS L  S   + L  E+  V +G    G++ 
Sbjct: 987  LGIHDARNHKFLPISHRTGKYPVFELSVKPSYLKASNP-TPLNLEQ--VQVGSSWLGFIN 1043

Query: 1048 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1107
             V ++   + +S +++ +L  +D++ + S L + ++ F +G AV  HV +++ +K  L L
Sbjct: 1044 NVADDCLWVNLSPNVRGRLRFMDASDDLSLLADVEKNFPVGSAVKVHVTAVDSQKGRLDL 1103

Query: 1108 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1167
              +   D +S   + +           G I+ GR++K+      +++Q+   + G V   
Sbjct: 1104 SAKRRSDKLSFSDISV-----------GMILPGRVTKVTERQ--VIMQLTDTIVGAVDLI 1150

Query: 1168 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1227
            ++ +          D  + +P + Y + + ++  V+ + +  +    + LSLR S     
Sbjct: 1151 DMAD----------DYTKANP-TIYQKNEVLRACVVAVDKANK---KISLSLRPS----- 1191

Query: 1228 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1287
                  LS+ +    + +  ++DL  N +V+G+V+ V   G F+ +   +   V +S+LS
Sbjct: 1192 ----KVLSSSLPVQDREITSMKDLKVNDVVRGFVRRVADSGLFVTVGHGVTVYVRVSDLS 1247

Query: 1288 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV 1347
            D Y++  +  F   +LV GR+  V+P   +++++LK S      ++ +  LS+L  G IV
Sbjct: 1248 DSYLKEWKDSFQADQLVKGRITVVDPEHNKLQMSLKDSVLDPDYKAPLT-LSDLKPGQIV 1306

Query: 1348 IGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1406
             G++++VE +G FI I+ + N+ GLCH SE++E  VD+  T++  G+ VK KI+K+D+E+
Sbjct: 1307 TGKVRKVEEFGAFIVIDRSANISGLCHRSEMAEKRVDDARTLFEEGDAVKAKIIKIDREQ 1366

Query: 1407 RRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDG 1466
             ++S G+K+SYF N  ++ + S +E+  E +    S +    +E      +D D +   G
Sbjct: 1367 GKVSFGLKASYFDNGEEDGESSGDEDESEGV----SLDGFGGMEVDGSDEEDDDSDMSMG 1422

Query: 1467 GSLVLAQIESRASVPPLEVNLDDEQPDMDNG--------ISQN-QGHTDEAKTIDEKNNR 1517
            G  +     S +     +     + P    G         S N Q   DEA   D  ++ 
Sbjct: 1423 GIDIEGDSGSDSGSDESDEEEGAKAPSKQKGGLGSGGFDWSGNVQDDEDEAMGSDSDDDE 1482

Query: 1518 HAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADV 1577
             ++KK K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +V
Sbjct: 1483 ESRKKRKKHRKPEIQVDRTGELDANGPQSVADYERLLLGEPDSSQLWLQYMAFQLELGEV 1542

Query: 1578 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1637
            EK R IAERAL+TI I ++ EKLNIWVA  NLEN YGN  ++ +  VF+RA QY D ++V
Sbjct: 1543 EKTREIAERALRTITIGQDAEKLNIWVALLNLENTYGN--DDTLEDVFKRACQYNDTQEV 1600

Query: 1638 HLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRA 1694
            +  ++ +Y ++ +N+ ADEL    + KK  HS K +L     L       E  +A++ RA
Sbjct: 1601 YERMISIYIQSGKNEKADELFQTALKKKIFHSSKFYLNYASFLFDTMADPERGRALLPRA 1660

Query: 1695 LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1752
            L SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW+I LD EI+ G
Sbjct: 1661 LQSLPSHTHVETTSKFGQLEFRSANGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKAG 1720

Query: 1753 DVDLIRGLFERAISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEER 1793
            D + +R LFER + +               L PK+ +F FKK+L +E+ +     G E+ 
Sbjct: 1721 DAEQVRRLFERVLGIRDTKKGAVSVEESKKLRPKQARFFFKKWLAFEEKLAAADGGNEKM 1780

Query: 1794 IEYVKQKAMEYVES 1807
            +E +K KA +YV+S
Sbjct: 1781 VEDIKAKAADYVKS 1794



 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 180/696 (25%), Positives = 308/696 (44%), Gaps = 51/696 (7%)

Query: 62  FHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 118
           F++GQ +   V+ +  D  +     +++I LS+       GL+   +   + + A V S+
Sbjct: 206 FYLGQYLRAYVVSVGSDSADARSKHRKRIELSVDPRQANSGLTKSDIVTNIAVQASVLSV 265

Query: 119 EDHGYILHFGL--PSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSS 173
           EDHG ++  G+      GF+    +  +  ID   +K G +   +V   +    V+ LS+
Sbjct: 266 EDHGLVMDLGIEGSDVKGFMSSKEI--DPKIDYSNIKEGSVFLCMVTGQNANGSVIKLSA 323

Query: 174 DPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
           + ++ S  + K        +I+  VPG      +  +  NG+    +     TVD+    
Sbjct: 324 NLNS-SGSIKKSHYLSSAPTINSFVPGTAAEILLTEVSSNGIAGKIMGMLDATVDLVQSG 382

Query: 231 NTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH----NRAPPSH---VK 281
                 + +  +    KV  R++   P S    VG +L  ++         P S      
Sbjct: 383 GNSGKDDLEKKFKIGAKVKGRLVCTFPASEPYKVGFSLLDHVCKFTSDGNGPGSSDDAPA 442

Query: 282 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCV 338
           V  I  ++KVV+VD GLG+ + I ST      +V +S +A+ +V  + +    ++ GS  
Sbjct: 443 VSAIVQEAKVVKVDPGLGVYVQIGST--KHIGFVHVSRLADGQVETITEDHGPFQTGSVH 500

Query: 339 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI-------AVDSFGAIV 391
             R++G+  L+ L     +    +       DV  G VVKGK+         VD  G IV
Sbjct: 501 EARVIGYNALDNLYLLSFERQVIDQPFLRLEDVTVGAVVKGKIEKLLIGAGGVD--GLIV 558

Query: 392 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKL 449
               G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +T KK+L+ S+ 
Sbjct: 559 SLADGITGLVPSMHFADAPLQFPEKKFREGMTVSARILSVNLEKRQIRLTLKKSLLNSES 618

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI   Y        + G I  I+ HG  V+FY  V+GF P SE+      +PS  + +GQ
Sbjct: 619 AIWKDYESIVPGAQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQ 678

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYV 564
           VV    +S   AS R+ +S    P+  +E      + ++ G LV+G V   + + V++ +
Sbjct: 679 VVSVHALSVEAASGRLAVS-CKDPSTFTESYRKAFENIRPGLLVTGTVFEKSSDDVLLKL 737

Query: 565 IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLI 621
              G     +  EH++D  L       S I+ G + + LLVLD +    L+  S + SL 
Sbjct: 738 DEFGLV-ARLTLEHVSDGSLSKQNSTLSKIRVGQKLNDLLVLDIQRGRRLIKVSGRASLK 796

Query: 622 NSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 679
            + +Q  +P +   +   S V G++ NI   G FV FLG L G  P+    D      S 
Sbjct: 797 KAVKQGLIPENFEDVQEGSDVTGFIRNITLDGVFVEFLGGLIGLVPKRLVGDENITKPSF 856

Query: 680 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
                Q V + +  ++ +  R  LS+  +  +   A
Sbjct: 857 GMTKSQIVTATVHSIDVDFRRFILSMNPAEATRAGA 892



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 164/382 (42%), Gaps = 51/382 (13%)

Query: 61   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 107
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 975  FFRTKQVISARILGIHDARNHKFLPISHRTGKYPVFELSVKPSYLKASNPTPLNLEQVQV 1034

Query: 108  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKPGLLLQGVVR----S 161
            G     ++ ++ D    ++   P+  G L   + +++  +  DV+    +   V+    +
Sbjct: 1035 GSSWLGFINNVADDCLWVNLS-PNVRGRLRFMDASDDLSLLADVEKNFPVGSAVKVHVTA 1093

Query: 162  IDRTRKVVYLSSD--PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 219
            +D  +  + LS+    D +S         IS+ +++PG     RV  + E  V++     
Sbjct: 1094 VDSQKGRLDLSAKRRSDKLS------FSDISVGMILPG-----RVTKVTERQVIMQLTDT 1142

Query: 220  FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY-LLHNRAPPS 278
              G VD+  + + +   N    Y +++ + A ++ VD  ++ + L+L P  +L +  P  
Sbjct: 1143 IVGAVDLIDMADDYTKAN-PTIYQKNEVLRACVVAVDKANKKISLSLRPSKVLSSSLPVQ 1201

Query: 279  HVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 331
              ++  + D  KV  V RG        GL + +         YV +SD+++  +++ +  
Sbjct: 1202 DREITSMKDL-KVNDVVRGFVRRVADSGLFVTVGH---GVTVYVRVSDLSDSYLKEWKDS 1257

Query: 332  YKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFG 388
            ++    V+ RI             LK S  +       T SD+KPG +V GKV  V+ FG
Sbjct: 1258 FQADQLVKGRITVVDPEHNKLQMSLKDSVLDPDYKAPLTLSDLKPGQIVTGKVRKVEEFG 1317

Query: 389  A--IVQFPGGVKALCPLPHMSE 408
            A  ++     +  LC    M+E
Sbjct: 1318 AFIVIDRSANISGLCHRSEMAE 1339



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 155/371 (41%), Gaps = 33/371 (8%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIF 62
            + +  G    G +  V +  L + L   +RG  R  DA D + L  ++E N        F
Sbjct: 1030 EQVQVGSSWLGFINNVADDCLWVNLSPNVRGRLRFMDASDDLSLLADVEKN--------F 1081

Query: 63   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
             VG  V   V  +D  K         L L        LS   +  GM+L   V  + +  
Sbjct: 1082 PVGSAVKVHVTAVDSQKGR-------LDLSAKRRSDKLSFSDISVGMILPGRVTKVTERQ 1134

Query: 123  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDT 177
             I+     +  G +   ++A++      P +     +L+  V ++D+  K + LS  P  
Sbjct: 1135 VIMQL-TDTIVGAVDLIDMADDY-TKANPTIYQKNEVLRACVVAVDKANKKISLSLRPSK 1192

Query: 178  V--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
            V  S    +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L +++  
Sbjct: 1193 VLSSSLPVQDREITSMKDLKVNDVVRGFVRRVADSGLFVTVGHGVTVYVRVSDLSDSY-L 1251

Query: 236  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN--RAPP--SHVKVGDIYDQSKV 291
              WK+ +   + V  RI  VDP    + ++L   +L    +AP   S +K G I    KV
Sbjct: 1252 KEWKDSFQADQLVKGRITVVDPEHNKLQMSLKDSVLDPDYKAPLTLSDLKPGQIV-TGKV 1310

Query: 292  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 351
             +V+     ++   S  +S   +   S++AE+ V      ++EG  V+ +I+     +G 
Sbjct: 1311 RKVEEFGAFIVIDRSANISGLCHR--SEMAEKRVDDARTLFEEGDAVKAKIIKIDREQGK 1368

Query: 352  ATGILKASAFE 362
             +  LKAS F+
Sbjct: 1369 VSFGLKASYFD 1379


>gi|402881399|ref|XP_003904261.1| PREDICTED: protein RRP5 homolog [Papio anubis]
          Length = 1871

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 387/1403 (27%), Positives = 656/1403 (46%), Gaps = 159/1403 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGMVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGTVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  ++ +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLNHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIG 750
            + E  R+ LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +     G
Sbjct: 787  DEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPG 846

Query: 751  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
              ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V
Sbjct: 847  MFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEV 906

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  
Sbjct: 907  HVSLHQDLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETG 948

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 949  HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPT 1006

Query: 929  RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 1007 RKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHAS 1066

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKP 1017
             + DD    +    +  K+G+TVTAR+I      DMK   FL            ELS++P
Sbjct: 1067 HILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSVRP 1122

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1123 SELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1182

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1130
            ++     L+   ++F +G+A+   V+  +  K  L L L             I    ++ 
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKLE- 1228

Query: 1131 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
               EG++  GR+ K+     GL V      +G++    +    VSD    Y E    PL 
Sbjct: 1229 ---EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI--FHVSD---SYSE---TPLE 1273

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
             +   + V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I+D
Sbjct: 1274 DFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQD 1320

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLV 1304
            +    +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL+
Sbjct: 1321 IKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKLL 1377

Query: 1305 AGRVLSVEPLSKRVEVTLKTSDS 1327
              RVL +      VE++    D+
Sbjct: 1378 TARVLRLNHQKNLVELSFLPGDT 1400



 Score =  292 bits (748), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1563
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1562 DEKPHQATKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1621

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1622 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1679

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1683
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1680 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1739

Query: 1684 Q-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742
            Q E    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1740 QAEASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1799

Query: 1743 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1800 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1859

Query: 1803 EYVES 1807
            EYVE+
Sbjct: 1860 EYVEA 1864



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 152/337 (45%), Gaps = 57/337 (16%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            +AV   +L ++   +++RL LRP           +S  N+ T + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGTVLDDVPVQGFFKKAGATF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLNHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 461

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1323 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 189/469 (40%), Gaps = 58/469 (12%)

Query: 954  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1011
             RLK G+  + R++   ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARLN--HLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 432  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 485

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 486  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGL 543

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 544  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 586

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            Y  GQ VK  VL          + E S    L  +S   SSD     +  G   +K + +
Sbjct: 587  YT-GQVVKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAI 633

Query: 1252 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1308
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 634  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 692

Query: 1309 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            L +      V +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 693  LCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 751

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 752  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 41.2 bits (95), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1332 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1384
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPS 1362

Query: 1385 IETIYRA----GEKVKVKILKVDKEKRRISL 1411
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|84040294|gb|AAI11041.1| PDCD11 protein [Homo sapiens]
          Length = 1444

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 382/1404 (27%), Positives = 649/1404 (46%), Gaps = 161/1404 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     
Sbjct: 787  DEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTP 845

Query: 750  GSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  
Sbjct: 846  GMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLE 905

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
            V +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E 
Sbjct: 906  VHVSLHQDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVET 947

Query: 869  NHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
             H   ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   + 
Sbjct: 948  GHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQ 1007

Query: 928  KRAK-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
            K ++                 KK +  +G +V   +  IKP  + +    G  G IH + 
Sbjct: 1008 KDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASH 1067

Query: 971  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKP 1017
            + DD         +  K+G+TVTAR+I      DM K+F +             ELS++P
Sbjct: 1068 ILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRP 1122

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1123 SELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1182

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQ 1129
            ++     L+   ++F +G+A+   V+  +  K LL L L  P +                
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHK---------------- 1226

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
              + EG++  GR+ K+    G         L     F ++  + +      Y E    PL
Sbjct: 1227 --LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPL 1272

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
              +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+
Sbjct: 1273 EDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQ 1319

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKL 1303
            D+    +++GYV ++   G F  L   +      S++S     SP K+       P GKL
Sbjct: 1320 DIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQ---HSPSKKALYNKHLPEGKL 1376

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDS 1327
            +  RVL +      VE++    D+
Sbjct: 1377 LTARVLRLNHQKNLVELSFLPGDT 1400



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 150/337 (44%), Gaps = 57/337 (16%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVL 461

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1323 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 161/730 (22%), Positives = 276/730 (37%), Gaps = 122/730 (16%)

Query: 784  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 843
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 844  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 900
             V Q +N IVE VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIVEKVKGNGGVVSL-----SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQV 288

Query: 901  MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 951
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVHLSL 345

Query: 952  ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 975
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 976  SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1033
                 N+F+   FK G T   RII  S   +     L  LS++ S++             
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQ------YLRY 447

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1093
             D+  G  V G V  + +   L+ +   ++  +  +  A     ++  ++++HIG  V  
Sbjct: 448  HDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLA--DILMKNPEKKYHIGDEVKC 505

Query: 1094 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1153
             VL  + E K L + L+          +    D        G I+  R+        G +
Sbjct: 506  RVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFII--RVKDY-----GCI 558

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V+   ++ G V   EL    + DP   +          Y  GQ VK  VL          
Sbjct: 559  VKFYNNVQGLVPKHELSTEYIPDPERVF----------YT-GQVVKVVVL---------- 597

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-M 1272
            + E S    L  +S   SSD     +  G   +K + ++   +V   V   T  G  + +
Sbjct: 598  NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAV 655

Query: 1273 LSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            L   + A +  S+LSD     P        G ++  RVL +     RV +  K +   T 
Sbjct: 656  LPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGRVLLCRKPALVSTV 714

Query: 1331 SQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
               +   N S +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +    +
Sbjct: 715  EGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHF 773

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1449
              G+ V  K+  VD+EK+R+ L ++ S       +L ++S    ++ +EE+    RS + 
Sbjct: 774  VEGQTVAAKVTNVDEEKQRMLLSLRLS--DCGLGDLAITSLLLLNQCLEELQGV-RSLMS 830

Query: 1450 ENSSVAVQDM 1459
               SV +Q +
Sbjct: 831  NRDSVLIQTL 840



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 118/246 (47%), Gaps = 35/246 (14%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
            F V  +LR+++ G  S+ +  L   +  P K LE+ E      +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKTL-LCLSLTGPHK-LEEGE------VAMGRVVKVTPNEGLTV 1248

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                     V + ++SD Y E+P ++F   K+V   +LS       + ++L++S +   +
Sbjct: 1249 SFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPET 1306

Query: 1332 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
            +S     EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  + +
Sbjct: 1307 KSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPSKK 1364

Query: 1387 TIYRA----GEKVKVKILKVDKEKRRISLGMKSSYFKNDA---DNL------QMSSEEES 1433
             +Y      G+ +  ++L+++ +K  + L    S+   D    D L      Q++ +EE 
Sbjct: 1365 ALYNKHLPEGKLLTARVLRLNHQKNLVEL----SFLPGDTGKPDVLSASLEGQLTKQEER 1420

Query: 1434 DEAIEE 1439
                EE
Sbjct: 1421 KTEAEE 1426


>gi|355562752|gb|EHH19346.1| hypothetical protein EGK_20032 [Macaca mulatta]
          Length = 1871

 Score =  419 bits (1076), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 384/1400 (27%), Positives = 653/1400 (46%), Gaps = 153/1400 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIIEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIG 750
            + E  R+ LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +     G
Sbjct: 787  DEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPG 846

Query: 751  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
              ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V
Sbjct: 847  MFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEV 906

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  
Sbjct: 907  HVSLHQDLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETG 948

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 949  HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPT 1006

Query: 929  RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 1007 RKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHAS 1066

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKP 1017
             + DD    +    +  K+G+TVTAR+I      DMK   FL            ELS++P
Sbjct: 1067 HILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSVRP 1122

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1123 SELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1182

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1130
            ++     L+   ++F +G+A+   V+  +  K  L L L             I    ++ 
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVIGPDSSKAFLCLSL-------------IGPHKLE- 1228

Query: 1131 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
               EG++  GR+ K+     GL V      +G++    +    VSD    Y E    PL 
Sbjct: 1229 ---EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI--FHVSD---SYSE---TPLE 1273

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
             +   + V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I+D
Sbjct: 1274 DFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQD 1320

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGR 1307
            +    +++GYV ++   G F  L   +      S++S           K  P GKL+  R
Sbjct: 1321 IKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHLPEGKLLTAR 1380

Query: 1308 VLSVEPLSKRVEVTLKTSDS 1327
            VL +      VE++    D+
Sbjct: 1381 VLRLNHQKNLVELSFLPGDT 1400



 Score =  293 bits (750), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1563
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1562 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1621

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1622 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1679

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1683
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1680 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1739

Query: 1684 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1740 QAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1799

Query: 1743 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1800 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1859

Query: 1803 EYVES 1807
            EYVE+
Sbjct: 1860 EYVEA 1864



 Score = 79.7 bits (195), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 57/337 (16%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 461

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1323 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 189/469 (40%), Gaps = 58/469 (12%)

Query: 954  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1011
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 432  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 485

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 486  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGL 543

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 544  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 586

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            Y  GQ VK  VL          + E S    L  +S   SSD     +  G   +K + +
Sbjct: 587  YT-GQVVKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAI 633

Query: 1252 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1308
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 634  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 692

Query: 1309 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            L +      V +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 693  LCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 751

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 752  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVIGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1332 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1384
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1362

Query: 1385 IETIYRA----GEKVKVKILKVDKEKRRISL 1411
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|225559332|gb|EEH07615.1| U3 snoRNP-associated protein Rrp5 [Ajellomyces capsulatus G186AR]
          Length = 1817

 Score =  419 bits (1076), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 390/1434 (27%), Positives = 680/1434 (47%), Gaps = 186/1434 (12%)

Query: 468  ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 523
            +TK+E   G +V+F +   GF   S L  D     SS    Y V    + RI+     S 
Sbjct: 477  VTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVG---FSA 533

Query: 524  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 574
              NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 534  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 592

Query: 575  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 632
            P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 593  PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 649

Query: 633  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 650  DILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 709

Query: 693  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 752
            +V+++  ++ +S K    S+       EH              H G+             
Sbjct: 710  NVDADFRKLVVSCKDQLSSTEAYKRALEHI-------------HPGN------------T 744

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI----------QAAILDV 802
            + G V E ++  +++  E+   V      H   G    +G+ +          +  IL++
Sbjct: 745  VSGTVFEKSNEDILLKLEDSGLVARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNM 804

Query: 803  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYL 861
             K+ RL+ ++ K           S +QA+++       +DL     V   V+ I+ +   
Sbjct: 805  QKSHRLIKVTNKP----------SLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLF 854

Query: 862  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 921
            V  L      +    V D +  K P   +   Q +  TV ++       R +L LK    
Sbjct: 855  VEFLGGLTGFVPKRLVDDDHVNK-PSFGYALAQPISLTVQSIEDDRQ--RFILTLKEPHT 911

Query: 922  TETSSSKRAKKKSSYD------------------VGSLVQAEITEIKPLELRLKFGIGFH 963
             +   S R K+ ++ +                   G + +A++  IK  ++ ++      
Sbjct: 912  GKQRVSDRDKESNNANQSSINPIDGDIKSLDDLTFGRITKAKVVSIKETQINVQLAENIQ 971

Query: 964  GRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWE 1012
            GRI ++EV D    + +       FK  Q +  RII    A+S++  P   +S    ++E
Sbjct: 972  GRIDVSEVFDSWEAIKDRKQPLRFFKAKQILPVRIIGIHDARSHRFLPISHRSGKYPVFE 1031

Query: 1013 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1072
            LS KPS L  +++    L     V IG    G+V  + ++   ++IS +++ +L + D +
Sbjct: 1032 LSAKPSSLESTDLD---LLSLDKVKIGSAWIGFVNNIGDDCLWISISPNVRGRLRLTDVS 1088

Query: 1073 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1132
             + S L +    F +G A+  HV  ++ +K  L L  +    G S   + IS+       
Sbjct: 1089 DDLSLLSDITTNFPVGSAIKVHVTGVDTDKNRLDLSAK---HGGSPNKLTISD------F 1139

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
             +G+I+ GR++++      ++VQ+   + G ++  ++                 D  S  
Sbjct: 1140 SKGEILLGRVTRVTEH--QVLVQLSDTVVGAINLIDMA----------------DDYSKI 1181

Query: 1193 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
            +   F K ++L +         +++  +  L  M S+     S  +  P   +  I  + 
Sbjct: 1182 NPADFHKNEILRVC-----VVDIDVPKKKILLSMRSSRVLSSSLPIQDP--EISSISQIK 1234

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
             N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF + +LV GRV+  +
Sbjct: 1235 VNDIVRGFVRRVADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQVNQLVRGRVILAD 1294

Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGL 1371
            P S +++++LK S      ++ I  + +L  G  V G+++ VE +G FI I+ T NL GL
Sbjct: 1295 PESNKLQMSLKQSVLDPNYKTPIT-IKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGL 1353

Query: 1372 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEE 1431
            CH +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+  D       +
Sbjct: 1354 CHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKDSDDESDGEDVQ 1413

Query: 1432 ESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQ 1491
            +  E       Y+             D+++ES D  S+    +E   +    E    D  
Sbjct: 1414 DESEENVSESEYD----------GGMDLELESGDDISMGGVDLEDTMNGDNSESGSSDGD 1463

Query: 1492 PDM----DNGIS------------QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAE 1535
              M    D GI+             N   TDE    D  ++  A  K+K+ R+QEI+   
Sbjct: 1464 VQMTGTKDAGITGGLVTSGFDWNGNNNIGTDEDNESDSDSDNKAAVKKKKRRKQEIQVDR 1523

Query: 1536 ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1595
               L+ + P++  ++ERL+   PNSS +W+KYMAF L +++V+KAR IAERAL++I+I +
Sbjct: 1524 TGDLDTNGPQSVADYERLLLGEPNSSLLWLKYMAFQLELSEVDKAREIAERALRSISIGQ 1583

Query: 1596 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1655
            + EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  L  +Y ++ ++  AD
Sbjct: 1584 DTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHERLTSIYIQSGKHDKAD 1641

Query: 1656 ELLYKMI-KKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1712
            EL   ++ KKF  S  ++L     L     + E  +A++ RA+ SLP H H+   S+   
Sbjct: 1642 ELFQAILKKKFTQSPNIYLNFATFLFDTLAEPERGRALLPRAIQSLPTHTHVDITSKFGQ 1701

Query: 1713 LEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1770
            LEF+  NG  +RGR++FEG++S +PKR DLW++ LD EI+ GD++ +R LF R + L  P
Sbjct: 1702 LEFRSPNGDIERGRTIFEGLISSFPKRVDLWNVLLDLEIKNGDMEQVRRLFGRVLGLGHP 1761

Query: 1771 --------------PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
                           K+ KF FKK+L +E+  G+E+ ++ VK +A +YV +  A
Sbjct: 1762 IAADGTKPGAKRLKDKQAKFFFKKWLAFEEKTGDEKMVDEVKARAADYVRAIKA 1815



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 186/755 (24%), Positives = 324/755 (42%), Gaps = 52/755 (6%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNLL-- 58
           + I  G K+ G V+ +N  D+ + LP  L G   L   +  L   ++  + ++++     
Sbjct: 155 KRIVVGSKILGQVSSINAHDIGLSLPNNLTGYIPLTAVSKTLQQKIEKLLNSSQEEDDNS 214

Query: 59  ------------PTIFHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLE 103
                        + F +GQ +   V   + +    K  GK+ I LS+       GLS  
Sbjct: 215 DGDDDGDDDLDLKSYFKLGQYLRAAVTSTETEVNHGKIKGKKHIELSVDPREANSGLSKS 274

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAEN-SGIDVKPGLLLQGVVR 160
            +     + A V S+EDHG ++  GL      GF+    +  +   + +K G +   VV 
Sbjct: 275 DLVVNATVQASVLSVEDHGLVMDLGLEDGQTRGFMSSKEIPHDLELLQIKEGTVFLCVVT 334

Query: 161 SIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
             +    VV LS++  T              +I+  +PG      +  +   G+    + 
Sbjct: 335 GHNANGSVVKLSANLPTAGSIKKSHFLTSAPTINSFLPGTAAEILLTQVTSTGMAGKIMG 394

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN---------PY 269
                VDI     T    +    Y+   K+  R++   PT+  + L  +         P 
Sbjct: 395 MLDAVVDIVQSGATAGKEDITARYHVGAKIKGRLICTFPTAEPLKLGFSILDHVVKFTPT 454

Query: 270 LLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
           +L +++    V  +  I  + KV +V+ GLG+ +              +SD   + +   
Sbjct: 455 VLDHKSSCEGVPAISAIVPEVKVTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISST 514

Query: 329 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAV 384
           +  Y   S    RI+GF  L+ L    L+    +       DV  G VVKGK+    I  
Sbjct: 515 QGPYMVDSTHEARIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGP 574

Query: 385 DSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 441
           D   G IV    G+  L P  HMS+ ++  P KKF+ G ++  R+L V  + +++ +T K
Sbjct: 575 DGISGLIVSLADGISGLVPGMHMSDTKLQHPEKKFREGVQVSARILSVNLEKRQLRLTLK 634

Query: 442 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           KTL+ S+ +    Y++      + G I  I+ HG  V+FY  V+GF P SE+      +P
Sbjct: 635 KTLLNSESSTWCDYSDILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDP 694

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL--VKLGSLVSGVVDVVTP 557
           +  +++GQVV    ++     R++ +S    +  T   +  L  +  G+ VSG V   + 
Sbjct: 695 AQHFNIGQVVNVHALNVDADFRKLVVSCKDQLSSTEAYKRALEHIHPGNTVSGTVFEKSN 754

Query: 558 NAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL-- 614
             +++ +   G     +  EH++D          + I+ G + ++LL+L+ + S+ L+  
Sbjct: 755 EDILLKLEDSGLV-ARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNMQKSHRLIKV 813

Query: 615 SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 672
           + K SL  + Q  +LP+    +   S V G+V NII  G FV FLG LTGF P+    D 
Sbjct: 814 TNKPSLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLFVEFLGGLTGFVPKRLVDDD 873

Query: 673 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
                S  Y + Q +   +  +  +  R  L+LK+
Sbjct: 874 HVNKPSFGYALAQPISLTVQSIEDDRQRFILTLKE 908



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 22/248 (8%)

Query: 189  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 248
            ++I     G ++  RV  + E+ V++       G +++  + + +   N   D+++++ +
Sbjct: 1134 LTISDFSKGEILLGRVTRVTEHQVLVQLSDTVVGAINLIDMADDYSKIN-PADFHKNEIL 1192

Query: 249  NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGL 298
               ++ +D   + + L++    + + + P         S +KV DI  +  V RV D GL
Sbjct: 1193 RVCVVDIDVPKKKILLSMRSSRVLSSSLPIQDPEISSISQIKVNDIV-RGFVRRVADNGL 1251

Query: 299  GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 358
             + L    T     AYV ISD+++  +++ + +++    VR R++            LK 
Sbjct: 1252 FVTLGHDVT-----AYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLKQ 1306

Query: 359  SAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVK 413
            S  +       T  D+K G  V GKV  V+ FGA +   G   +  LC    M+E ++  
Sbjct: 1307 SVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVED 1366

Query: 414  PGKKFKVG 421
              K F+ G
Sbjct: 1367 ARKLFEKG 1374


>gi|390473341|ref|XP_002756467.2| PREDICTED: protein RRP5 homolog [Callithrix jacchus]
          Length = 1880

 Score =  419 bits (1076), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 387/1406 (27%), Positives = 662/1406 (47%), Gaps = 165/1406 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 89   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVMQEQPLKDLF 148

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L   ++  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 149  HLPELFSPGMLVRCVVSSLSITER--GKKSVKLSLNPKNVNRVLSAEVLKPGMLLTGTVS 206

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +  +  VV+L
Sbjct: 207  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIQQKNKGAKLKVGQYLNCIIEEVKGSGGVVHL 266

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 267  SIGHLEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 326

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQ 288
                T + N     + V A IL V P +R V L++ P  L    P S +    +G +   
Sbjct: 327  KKAGTYFSN-----QAVKACILCVHPRTRVVRLSMRPIFLQPGRPLSRLSCQHLGAVLTD 381

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 382  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 438

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D+KPG VVKG V+ +  +G +V+    ++ L P  H+++
Sbjct: 439  DELALLSLRTSIIEAQYLRYHDIKPGAVVKGTVLTIKPYGMLVKVGEQMRGLVPHMHLAD 498

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTLV+SKL  ++ +A+A   L THG
Sbjct: 499  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLVMTLKKTLVESKLPAITCFADAKPGLQTHG 558

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FY+ VQG  P+ EL  +   +P  +++ GQVVK  +++S P+  R+ 
Sbjct: 559  FIIRVKDYGCIVKFYSDVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNSEPSKERML 618

Query: 527  LSFMM----KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +    +P +        ++  + +G LV   V   T + + V V+    ++  +PT
Sbjct: 619  LSFKLLRDPEPKKEPAGHNQKKEKAINVGQLVDVKVLEKTKDGLEVAVLPHN-TRAFLPT 677

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S I
Sbjct: 678  SHLSDHVTNGPLLHHWLQAGDTLHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEI 737

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S+ +  GQ+V + + +V
Sbjct: 738  HPGMLLVGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSEHFVEGQTVVAKVTNV 797

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQSSKHNGSEL------KWVEG 746
            + E  R+ LSL+ S C   D +      L +  E++  ++S   N   +      +   G
Sbjct: 798  DEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPG 857

Query: 747  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL--DVAK 804
              +  V++ KV E  D  VV S     ++    + +   G  VESG   +  IL  D+ K
Sbjct: 858  MFLDLVVQ-KVLE--DGSVVFSGGPVPNLVLRASRYHRGGQEVESGQKKKVVILNVDLLK 914

Query: 805  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 864
             E LV L    V          NR+A+K ++  E       HQ   A+V+ +++++ + S
Sbjct: 915  LEVLVSLHQDLV----------NRKAKKLRKGSE-------HQ---AVVQHLEKSFAIAS 954

Query: 865  LPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST----------AGRLL 913
            L E  H + ++  S  N T +F  ++   GQ V  T+       T          A R +
Sbjct: 955  LVETGHLVAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTM 1014

Query: 914  LLLKAISET-------ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 966
             L +  SET       + + +    KK ++ +G +V   +  IKP  + +    G  G I
Sbjct: 1015 RLTRKDSETVDEDEEVDPALTVGTIKKHTFSIGDMVTGTVKSIKPTHVVVTLKDGIIGCI 1074

Query: 967  HITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELS 1014
            H + + DD         +  K+G+TVTAR+I      DMK   FL            ELS
Sbjct: 1075 HASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTVPELS 1130

Query: 1015 IKPSML----TVSEIGSKLLFEECD-VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLF 1067
            ++PS L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ 
Sbjct: 1131 VRPSELEDGHTALNTHSVSPMEKIKRYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIP 1190

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
            +L ++     L+   ++F +G+A+   V+  +  K  LRL L             I    
Sbjct: 1191 LLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLRLSL-------------IGPHK 1237

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
            ++    EG++  GR+ K+     GL +      +G++    L    VSD    Y E    
Sbjct: 1238 LE----EGEVAMGRVVKVTPN-EGLTISFP---FGKIGTVSL--FHVSD---SYSE---T 1281

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
            PL  +   + V+C +L     V     + LSLR      SS  + +  + V+ P   +  
Sbjct: 1282 PLEDFVPQKVVRCYILSTEDNV-----LTLSLR------SSRTNPETKSKVEDP--EINS 1328

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIG 1301
            I+D+    +++GYV+++   G F  L   +   V L+        SP K+       P G
Sbjct: 1329 IQDIKEGQLLRGYVRSIQPHGVFFGLGPSV---VGLARYPHVSQHSPSKKALYNKHLPKG 1385

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            KL+  RVL +      VE++    D+
Sbjct: 1386 KLLTARVLRLNHQKNLVELSFLPGDT 1411



 Score =  291 bits (744), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1512 DEKNNRHAKKKEKEERE-------QEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFV 1563
            DEK ++  KKK K+ERE       +E+   EE L++    P + D+F+RLV SSPNSS +
Sbjct: 1572 DEKPHQATKKKSKKERELQKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1631

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1632 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1689

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1683
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1690 VFERAVQYNEPLKVFLHLADIYAKSEKFQEASELYNRMLKRFRQEKAVWIKYGAFLLRRS 1749

Query: 1684 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G  +R +++FE  L+ YPKRTD+WS
Sbjct: 1750 QAGASHCVLQRALECLPSTEHVDVIAKFAQLEFQLGDPERAKAIFENTLTTYPKRTDVWS 1809

Query: 1743 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
            +Y+D  I+ G    +R +FER I LSL PKKMKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1810 VYIDMTIKHGSQKDVRDIFERVIHLSLAPKKMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1869

Query: 1803 EYVES 1807
            EYVE+
Sbjct: 1870 EYVEA 1874



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 149/334 (44%), Gaps = 55/334 (16%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            +AV   +L ++   +++RL +RP           +S  ++   + +  + G     G   
Sbjct: 336  QAVKACILCVHPRTRVVRLSMRPIFLQPGRPLSRLSCQHLGAVLTDVPVQGFFKKAGATF 395

Query: 1144 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 396  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 432

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 433  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIKPGAVVKGTVL 472

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             +   G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 473  TIKPYGMLVKVGEQMRGLVPHMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLVMTL 532

Query: 1323 KTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1380
            K +  +S+  +   I   ++   G    G I RV+ YG  +    +++ GL    ELS +
Sbjct: 533  KKTLVESKLPA---ITCFADAKPGLQTHGFIIRVKDYGCIVKF-YSDVQGLVPKHELSTE 588

Query: 1381 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            ++ + E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 589  YIPDPERVFYTGQVVKVAVLNSEPSKERMLLSFK 622



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
            N S +H G +++G +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V 
Sbjct: 733  NFSEIHPGMLLVGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSEHFVEGQTVV 791

Query: 1397 VKILKVDKEKRRISLGMKSS 1416
             K+  VD+EK+R+ L ++ S
Sbjct: 792  AKVTNVDEEKQRMLLSLRLS 811



 Score = 45.1 bits (105), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 105/209 (50%), Gaps = 22/209 (10%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
            F V  +LR+++ G    +SS     +   G H  K+E+     +  G V  VT ++G  I
Sbjct: 1208 FRVGQALRATVVG---PDSSKAFLRLSLIGPH--KLEE---GEVAMGRVVKVTPNEGLTI 1259

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                     V L ++SD Y E+P ++F   K+V   +LS E     + ++L++S +   +
Sbjct: 1260 SFPFGKIGTVSLFHVSDSYSETPLEDFVPQKVVRCYILSTE--DNVLTLSLRSSRTNPET 1317

Query: 1332 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
            +S     EIN++ ++  G ++ G ++ ++ +G+F  +   ++VGL     +S+ H  + +
Sbjct: 1318 KSKVEDPEINSIQDIKEGQLLRGYVRSIQPHGVFFGL-GPSVVGLARYPHVSQ-HSPSKK 1375

Query: 1387 TIYR----AGEKVKVKILKVDKEKRRISL 1411
             +Y      G+ +  ++L+++ +K  + L
Sbjct: 1376 ALYNKHLPKGKLLTARVLRLNHQKNLVEL 1404


>gi|207342136|gb|EDZ69994.1| YMR229Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1729

 Score =  418 bits (1075), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 380/1314 (28%), Positives = 628/1314 (47%), Gaps = 193/1314 (14%)

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 623
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 624  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 678  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 738  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 791
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 792  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 846
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 847  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 901
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 902  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 951
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 952  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1002
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1003 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1060
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1061 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
             VDI   NM T I   D + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVDDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1180 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1235
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1348
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1349 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
            G IK V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK+
Sbjct: 1270 GTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329

Query: 1408 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1467
            +ISL +K+S+F  +A   +++S   +    +++   +   ++ ++     D D ES+ G 
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTADQLEKEDEDEVMADA--GFNDSDSESDIGD 1384

Query: 1468 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1524
                               + D +P+   +G+S + G    A  +D+        +++  
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429

Query: 1525 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1575
              E ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489

Query: 1576 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
            ++EKAR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D  
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547

Query: 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1693
             +H  LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607

Query: 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1753
            AL +LP+  HI+ + + A LEF  G  +RGRS+FEG++++  KR DLW++Y+DQE++  D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADALKRIDLWNVYVDQEVKAKD 1667

Query: 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
               +  LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 284/1267 (22%), Positives = 542/1267 (42%), Gaps = 178/1267 (14%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------------------LARAADAL 42
            + +  G  L G ++ + ++DL I    G+ G                     +    DA 
Sbjct: 114  KTLKNGSSLLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAA 173

Query: 43   D----PILDNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGK 84
            D     + D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K
Sbjct: 174  DEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKK 233

Query: 85   RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 144
            ++I L++  S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +    
Sbjct: 234  KRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNF 292

Query: 145  SGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 203
              +   PG +  G + +  DR+   + +++D    S    K  +  SID ++PG +V   
Sbjct: 293  EKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLL 344

Query: 204  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 263
             +SI +NG+        +G V++ HL+ TF   + K+ +     +  RI+          
Sbjct: 345  CESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAIGSSIRCRII---------- 393

Query: 264  LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------S 310
                   L N+   S  KV  + +   +++++  L     + + P+             S
Sbjct: 394  -----ACLENK---SGDKVLILSNLPHILKLEDALRSTEGLDAFPIGYTFESCSIKGRDS 445

Query: 311  TPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 365
               Y+ + D     V    V ++E      S    R+LG+  ++ +          +   
Sbjct: 446  EYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKY 501

Query: 366  FTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
               +D+  G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G++
Sbjct: 502  LRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSK 561

Query: 424  LVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHG 475
            +  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +       T   +   + +G
Sbjct: 562  VKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNG 621

Query: 476  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
            C + F+ G+ GF P SE+       P     +GQ V  +++      RRI  +  +   +
Sbjct: 622  CIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQ 681

Query: 536  VSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVM 589
             ++     +++V   ++++  V   T ++V+V +   G  +G I   HL+D  +E     
Sbjct: 682  AAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQ 740

Query: 590  KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGY 643
               ++ G E   L++  D  +    +S K SLI  A++  LP    D   ++ +  +H Y
Sbjct: 741  LKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAY 800

Query: 644  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703
            + +I + G FV F G+  G    S AVD +  D+SK +Y+ QSV   +L  + +  +  L
Sbjct: 801  IKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLL 860

Query: 704  SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESN 761
            SLK                 +E+ +          S +K  +   IGS+++ K+   + N
Sbjct: 861  SLKAPKVKEEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKSVKKN 908

Query: 762  DFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVD 810
               V+++   H         D Y  IT  +   +  +   VI+  I+   DV K+ + + 
Sbjct: 909  QLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLP 967

Query: 811  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYN 869
            ++ K         +    + + K+   ++ +++ + Q +   V     N+L L++ P   
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLK 1027

Query: 870  HSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSK 928
              I    ++D N   F +    N +SV     AL    ++  R    + AI ++    + 
Sbjct: 1028 ARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN- 1081

Query: 929  RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 988
                 S+  V   +   + +I    + L  G    G   IT+  +D S  ++  F + KI
Sbjct: 1082 ----MSTIKVDDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KI 1136

Query: 989  GQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
               +   +++  + NK         ELS++ +      I S       D+  G+ V G V
Sbjct: 1137 NNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS-----HEDLKQGEIVDGIV 1184

Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
              V+++   + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++ + + 
Sbjct: 1185 KNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-IS 1241

Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRV 1164
            L LR  +     K +   +D     I  GD+  G I  +     G+ V++    ++ G  
Sbjct: 1242 LTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD--FGVFVKLDNTVNVTGLA 1294

Query: 1165 HFTELKN 1171
            H TE+ +
Sbjct: 1295 HITEIAD 1301



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 138/331 (41%), Gaps = 39/331 (11%)

Query: 101  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 153
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISIDLLVPGMMVSTRVQSILENGV 212
             LQ  V SIDR    V      + + K  V  ++  I +D  +PG     RV  I E  V
Sbjct: 1055 ALQVKVASIDREHGFV------NAIGKSHVDINMSTIKVDDELPG-----RVLKIAEKYV 1103

Query: 213  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNP 268
            +L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L  
Sbjct: 1104 LLDLGNKVTGISFITDALNDFSLT-LKEAF--EDKINNVIPTTVLSVDEQNKKIELSLRS 1160

Query: 269  YLLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 326
                 R+  SH  +K G+I D       D+G+ + L          A+V +S +++  ++
Sbjct: 1161 ATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLK 1215

Query: 327  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIA 383
            + +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  
Sbjct: 1216 EWKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKN 1274

Query: 384  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
            V  FG  V+    V  +  L H++E    KP
Sbjct: 1275 VTDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|338716596|ref|XP_001499541.3| PREDICTED: protein RRP5 homolog [Equus caballus]
          Length = 1870

 Score =  418 bits (1075), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 395/1400 (28%), Positives = 654/1400 (46%), Gaps = 155/1400 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      +E  A E+ L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLSEQVAQEEPLKDLA 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L   +K  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  RLPELFSPGMLVRCVVSSLSVTEK--GKKNVKLSLNPKNVNEVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLP----RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLS 172
            S+EDHGY++  G+     FLP    +  + +N G  +K G  L  ++  +  +  VV LS
Sbjct: 196  SLEDHGYLVDIGVAGARAFLPLQKAQEYIRQNKGAKLKVGQYLNCIIEEVKGSGGVVSLS 255

Query: 173  SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 232
                 VS  +  +    +++ L+PG++V  +VQ +   G+ L+FL++FTG VD  HL   
Sbjct: 256  IGHSEVSTAIATEEHNWTLNNLLPGLVVKAQVQKVTPLGLTLNFLSFFTGLVDFMHLD-- 313

Query: 233  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQS 289
             P    K  Y  ++ V A +L V P +RAV L+L P  L    P + +    +G + D  
Sbjct: 314  -PKKAGK--YFSNQAVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLSCQHLGAVLDNV 370

Query: 290  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 349
             V       G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++
Sbjct: 371  PVQGFFSKAGATFRLKDGAL---AYARLSHLSDPKNVFNPETFKPGNTHKCRIIDYSQMD 427

Query: 350  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
             LA   L+ S  E     + D+KPG +VKG V+ +  +G +V+    ++ L P  H+++ 
Sbjct: 428  ELALLSLRTSVIEAQYLRYHDIKPGALVKGTVLTIKPYGMLVKVGEQIRGLVPPMHLADI 487

Query: 410  EIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 467
             +  P KK++ G E+  RVL    +++++ +T KKTLV+SKL  ++ YA+A   L THG+
Sbjct: 488  LMKNPEKKYRTGDEVKCRVLLCDPEARKLMMTLKKTLVESKLPAITCYADAKPGLQTHGF 547

Query: 468  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
            I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ L
Sbjct: 548  ILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNCEPSKERMLL 607

Query: 528  SFMMKPTRVSE--------DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            SF +      E           V +G L+   V   T + + V V+        +PT HL
Sbjct: 608  SFKLLSDSKKECAGHNQKKRRAVNVGQLMDVKVLEKTKDGLEVAVLPHNIP-AFLPTPHL 666

Query: 580  ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPN 637
            +DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S IHP 
Sbjct: 667  SDHVANGPLLYHWLQAGDTLHRVLCLSQSERHVLLCRKPALVSTVEGGQDPKSFSEIHPG 726

Query: 638  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
             ++ G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E
Sbjct: 727  MLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEE 786

Query: 698  TGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVI 753
              R+ LSL+ S C+  D +          LEE+  +     +  S L + +     G V+
Sbjct: 787  KQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMVL 846

Query: 754  EGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVD 810
            + +V E  + G V+ F E   V G +     +  AG  VESG   +A IL+V   +  V 
Sbjct: 847  DLEVQEVLEDGSVL-FSE-GPVPGLVLRANRYHRAGQEVESGQKKKAVILNVDMLKLEVH 904

Query: 811  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 870
            +SL    +        NR+A+K K+  E       HQ   AIV+ ++E++ V SL E  H
Sbjct: 905  VSLCHDLV--------NRKAKKLKKGSE-------HQ---AIVQHLEESFAVASLVETGH 946

Query: 871  SIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKR 929
               ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R
Sbjct: 947  LAAFSLTSHLNDTFRFDSEKLHVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRQTR 1004

Query: 930  AK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
                                 KK +  +G +V   +  IKP  + +    G  G IH + 
Sbjct: 1005 KDSEAVDEDEEVDATLVVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLADGIIGCIHASH 1064

Query: 971  VNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKPSML- 1020
            + DD         +  K+G+TVTAR+I     K+ K  P     F+    ELS++PS L 
Sbjct: 1065 ILDDVPAGTSPT-AKLKVGKTVTARVIGGRDVKTFKFLPISHPRFIRTIPELSVRPSELE 1123

Query: 1021 ----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAY 1073
                T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++ 
Sbjct: 1124 KDGHTALNTHSVSPLEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSL 1183

Query: 1074 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1133
                L+   ++F IG+A+   V++ +  K  L L L             I   N++    
Sbjct: 1184 SFKVLKHPDKKFRIGQALKATVVNPDSSKAFLCLSL-------------IGPHNLE---- 1226

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            +G++  GR+ K+ +   GL V       GRV         VSD    Y E    PL  + 
Sbjct: 1227 KGEVAMGRVVKV-TPKKGLTVSFPFGKIGRVSI-----FHVSD---SYSE---TPLEDFT 1274

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
              + V+C VL  +  V     + LSLRS     S TN    S   D     +  ++D+  
Sbjct: 1275 PQKVVRCYVLSTAGHV-----LTLSLRS-----SRTNPETKSKIADP---EINSLKDIRE 1321

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------EKEFPIGKLVAGR 1307
              +++GYVK+V   G    L   +   V L+        SP       +  P GKL+  +
Sbjct: 1322 GQLLRGYVKSVQPHGVLFGLGPSV---VGLAQYPHVSQYSPTEKALYNRHLPEGKLLTAK 1378

Query: 1308 VLSVEPLSKRVEVTLKTSDS 1327
            VLS+      VE++    D+
Sbjct: 1379 VLSLNHQKNLVELSFLPGDT 1398



 Score =  280 bits (717), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 139/285 (48%), Positives = 202/285 (70%), Gaps = 4/285 (1%)

Query: 1525 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1583
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1581 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1640

Query: 1584 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1643
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1641 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1698

Query: 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1702
            +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +
Sbjct: 1699 IYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPVKE 1758

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
            H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1759 HVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMIIKHGSQKEVRDIFE 1818

Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1819 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1863



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 148/334 (44%), Gaps = 45/334 (13%)

Query: 1084 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1143
            ++   +AV   VL ++   + +RL LRP           +S  ++   +    + G    
Sbjct: 319  KYFSNQAVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLSCQHLGAVLDNVPVQG---- 374

Query: 1144 KILSGVGGLV-VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
               S  G    ++ G   Y R+         +SDP + ++   F P      G   KC++
Sbjct: 375  -FFSKAGATFRLKDGALAYARLSH-------LSDPKNVFNPETFKP------GNTHKCRI 420

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 421  IDYSQMDELAL---LSLRTSV----------------IEAQYL-RYHDIKPGALVKGTVL 460

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P ++++ +TL
Sbjct: 461  TIKPYGMLVKVGEQIRGLVPPMHLADILMKNPEKKYRTGDEVKCRVLLCDPEARKLMMTL 520

Query: 1323 KTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1380
            K +  +S+  +   I   ++   G    G I RV+ YG  +   N ++ GL    ELS +
Sbjct: 521  KKTLVESKLPA---ITCYADAKPGLQTHGFILRVKDYGCIVKFYN-DVQGLVPKHELSAE 576

Query: 1381 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            +V + E ++ AG+ VKV +L  +  K R+ L  K
Sbjct: 577  YVPDPERVFYAGQVVKVVVLNCEPSKERMLLSFK 610



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 100/245 (40%), Gaps = 33/245 (13%)

Query: 880  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 939
            +   K P K+F  GQ++ ATV+  P SS A   L L+                  + + G
Sbjct: 1185 FKVLKHPDKKFRIGQALKATVVN-PDSSKAFLCLSLIGP---------------HNLEKG 1228

Query: 940  SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
             +    + ++ P + L + F  G  GR+ I  V+D  S   E    +F   + V   +++
Sbjct: 1229 EVAMGRVVKVTPKKGLTVSFPFGKIGRVSIFHVSDSYS---ETPLEDFTPQKVVRCYVLS 1285

Query: 999  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1054
             +         +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V     
Sbjct: 1286 TAG-------HVLTLSLRSSR-TNPETKSKIADPEINSLKDIREGQLLRGYVKSVQPHGV 1337

Query: 1055 LLTISRHLKA-QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1113
            L  +   +     +   S Y P+E   + R    GK +T  VLS+N +K L+ L   P  
Sbjct: 1338 LFGLGPSVVGLAQYPHVSQYSPTEKALYNRHLPEGKLLTAKVLSLNHQKNLVELSFLPGD 1397

Query: 1114 DGISD 1118
             G  D
Sbjct: 1398 TGKPD 1402



 Score = 44.3 bits (103), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
            + S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V 
Sbjct: 719  SFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVV 777

Query: 1397 VKILKVDKEKRRISLGMKSS 1416
             K+  VD+EK+R+ L ++ S
Sbjct: 778  AKVTNVDEEKQRMLLSLRLS 797


>gi|383416723|gb|AFH31575.1| protein RRP5 homolog [Macaca mulatta]
          Length = 1871

 Score =  418 bits (1075), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 384/1400 (27%), Positives = 653/1400 (46%), Gaps = 153/1400 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIIEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIG 750
            + E  R+ LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +     G
Sbjct: 787  DEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPG 846

Query: 751  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
              ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V
Sbjct: 847  MFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEV 906

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  
Sbjct: 907  HVSLHQDLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETG 948

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 949  HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPT 1006

Query: 929  RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 1007 RKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHAS 1066

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKP 1017
             + DD    +    +  K+G+TVTAR+I      DMK   FL            ELS++P
Sbjct: 1067 HILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSVRP 1122

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1123 SELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1182

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1130
            ++     L+   ++F +G+A+   V+  +  K  L L L             I    ++ 
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKLE- 1228

Query: 1131 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
               EG++  GR+ K+     GL V      +G++    +    VSD    Y E    PL 
Sbjct: 1229 ---EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI--FHVSD---SYSE---TPLE 1273

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
             +   + V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I+D
Sbjct: 1274 DFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQD 1320

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGR 1307
            +    +++GYV ++   G F  L   +      S++S           K  P GKL+  R
Sbjct: 1321 IKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHLPEGKLLTAR 1380

Query: 1308 VLSVEPLSKRVEVTLKTSDS 1327
            VL +      VE++    D+
Sbjct: 1381 VLRLNHQKNLVELSFLPGDT 1400



 Score =  293 bits (750), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1563
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1562 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1621

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1622 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1679

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1683
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1680 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1739

Query: 1684 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1740 QAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1799

Query: 1743 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1800 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1859

Query: 1803 EYVES 1807
            EYVE+
Sbjct: 1860 EYVEA 1864



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 57/337 (16%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 461

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1323 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 189/469 (40%), Gaps = 58/469 (12%)

Query: 954  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1011
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 432  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 485

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 486  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGL 543

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 544  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 586

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            Y  GQ VK  VL          + E S    L  +S   SSD     +  G   +K + +
Sbjct: 587  YT-GQVVKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAI 633

Query: 1252 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1308
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 634  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 692

Query: 1309 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            L +      V +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 693  LCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 751

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 752  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 41.6 bits (96), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1332 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1384
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1362

Query: 1385 IETIYRA----GEKVKVKILKVDKEKRRISL 1411
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|384945910|gb|AFI36560.1| protein RRP5 homolog [Macaca mulatta]
          Length = 1871

 Score =  418 bits (1075), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 384/1400 (27%), Positives = 653/1400 (46%), Gaps = 153/1400 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIIEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIG 750
            + E  R+ LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +     G
Sbjct: 787  DEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPG 846

Query: 751  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
              ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V
Sbjct: 847  MFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEV 906

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  
Sbjct: 907  HVSLHQDLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETG 948

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 949  HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPT 1006

Query: 929  RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 1007 RKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHAS 1066

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKP 1017
             + DD    +    +  K+G+TVTAR+I      DMK   FL            ELS++P
Sbjct: 1067 HILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSVRP 1122

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1123 SELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1182

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1130
            ++     L+   ++F +G+A+   V+  +  K  L L L             I    ++ 
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKLE- 1228

Query: 1131 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
               EG++  GR+ K+     GL V      +G++    +    VSD    Y E    PL 
Sbjct: 1229 ---EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI--FHVSD---SYSE---TPLE 1273

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
             +   + V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I+D
Sbjct: 1274 DFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQD 1320

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGR 1307
            +    +++GYV ++   G F  L   +      S++S           K  P GKL+  R
Sbjct: 1321 IKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHLPEGKLLTAR 1380

Query: 1308 VLSVEPLSKRVEVTLKTSDS 1327
            VL +      VE++    D+
Sbjct: 1381 VLRLNHQKNLVELSFLPGDT 1400



 Score =  293 bits (749), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1563
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1562 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1621

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1622 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1679

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1683
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1680 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLQRS 1739

Query: 1684 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1740 QAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1799

Query: 1743 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1800 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1859

Query: 1803 EYVES 1807
            EYVE+
Sbjct: 1860 EYVEA 1864



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 57/337 (16%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 461

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1323 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 189/469 (40%), Gaps = 58/469 (12%)

Query: 954  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1011
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 432  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 485

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 486  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGL 543

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 544  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 586

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            Y  GQ VK  VL          + E S    L  +S   SSD     +  G   +K + +
Sbjct: 587  YT-GQVVKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAI 633

Query: 1252 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1308
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 634  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 692

Query: 1309 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            L +      V +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 693  LCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 751

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 752  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1332 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1384
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1362

Query: 1385 IETIYRA----GEKVKVKILKVDKEKRRISL 1411
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|395828464|ref|XP_003787398.1| PREDICTED: protein RRP5 homolog [Otolemur garnettii]
          Length = 1870

 Score =  418 bits (1075), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 394/1405 (28%), Positives = 657/1405 (46%), Gaps = 163/1405 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GLRG  +  +  D      NE    E+ L    
Sbjct: 87   ESLCEGMRILGCVKEVNELELVISLPNGLRGFVQVTEICDAYTKKLNEQVTQEEPLKDLL 146

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  +D  ++  GK+ + LSL    + + LS E+++ GM+LT  V 
Sbjct: 147  HLPELFSPGMLVRCVVSSVDTTER--GKKSVKLSLNPKNVNRVLSAESLKPGMLLTGTVS 204

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  V+  +  +  VV L
Sbjct: 205  SLEDHGYLVDIGVDGTRAFLPLPKAQEYIRQKNKGAKLKVGQYLNCVIEEVKASGGVVSL 264

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            +     VS  +T + +  +++ L+PG++V  +VQ +  +G+ L+FLT+FTG VD  HL  
Sbjct: 265  AIGHAEVSTAITTEEQNWTLNNLLPGLVVKAQVQKVTPHGLTLNFLTFFTGLVDFMHLDP 324

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---SHVKVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P LL    P    S   +G + D 
Sbjct: 325  KKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPILLQPGRPLIRLSCQHLGAVLDD 379

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V       G    +      T AY  +S +++ E       +K G+  + RI+ +  +
Sbjct: 380  VSVQGFFNKAGATFRLKD---GTLAYARLSHLSDSENSFNPDAFKPGNTHKCRIIDYSQM 436

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ +  E     + D+KP  VVKG V+ +  +G +V+    ++ L P  H+++
Sbjct: 437  DELALLSLRTAIIEAQYLRYHDIKPAAVVKGTVLTIKPYGMLVKVGEQIRGLVPAMHLAD 496

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              I  P KK+ VG E+  RVL    ++K++ +T KKTLV+SKL  ++ Y++    L THG
Sbjct: 497  IPIKNPEKKYHVGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLRAIACYSDVKPGLQTHG 556

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 557  FIIRVKDYGCIVKFYNDVQGLVPKHELSAEYIPDPERVFYTGQVVKAVVLNCEPSKERML 616

Query: 527  LSFMM--------KPTRVSEDD--LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +PT  S     ++ +G LV   +   T + + V V+        +PT
Sbjct: 617  LSFKLLSDPELQKEPTGHSRKKGRVINIGQLVDVRISEKTKDGLEVTVLPSNIP-AFLPT 675

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ ++ ++   ++PG    ++L L     ++LL  K +L+++ +  Q P + S I
Sbjct: 676  PHLSDHVANSPLLYHWLQPGDTLHRVLCLSRSEGHVLLCRKPALVSTVEGGQDPKNFSEI 735

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 736  HPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNV 795

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK-----HNGSELKWVEGFII 749
            + E  R+ LSL+ S C   DA+      LL + +  LQ  +      +   ++ +     
Sbjct: 796  DEEKQRMLLSLRLSDCMLGDAA-TTSLLLLNQCLEELQGVRSLMRNRDSILIQTLAEMTP 854

Query: 750  GSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAE 806
            G ++E  V E  + G VV       V G +   + +  AG  VESG   +  +L+V   +
Sbjct: 855  GMILELVVQEVLEDGSVVF--SGGPVPGLVLRASKYHRAGQEVESGQKKKVVVLNVDMLK 912

Query: 807  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 866
              V +SL    +        N++A+K K+  E       HQ   AIV+ ++E++ V SL 
Sbjct: 913  LEVYVSLHQDLV--------NKKAKKLKKGSE-------HQ---AIVQHLEESFAVASLV 954

Query: 867  EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 925
            +  H   ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   
Sbjct: 955  DTGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRR 1014

Query: 926  SSKRAK-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 968
            + K ++                 KK +  +G +V   +  IKP  + +    G  G IH 
Sbjct: 1015 TQKDSETVDEDEEVDPALAIATIKKHALSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHA 1074

Query: 969  TEVNDDKSNVVENLF--SNFKIGQTVTARIIAKSNKPDMKKSFL-----------WELSI 1015
            + + DD   V E     +  ++G+TVTAR+I   +    K  FL            ELS+
Sbjct: 1075 SHILDD---VPEGTCPTAKLQVGKTVTARVIGGRDVKTFK--FLPVSHPRFVRTIPELSV 1129

Query: 1016 KPSMLTVSEIGSKLLFEEC--------DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQ 1065
            +PS L   E G   L                GQ VT ++  Y V  +W  + I+  ++ +
Sbjct: 1130 RPSEL---EDGHTALNSHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDVRGR 1186

Query: 1066 LFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1125
            + +L ++     L+   ++F IG+A++  V+  +  K  + L L             I  
Sbjct: 1187 IPLLLTSLSFKVLKHPDKKFRIGQALSATVVGPDSSKAFVCLSL-------------IGP 1233

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
              ++    +G++  GR++K+     GL+V       GRV         VSD    Y E  
Sbjct: 1234 HKLE----KGEVAMGRVAKVTPN-EGLMVSFPFGKMGRVSV-----FHVSD---SYSEM- 1279

Query: 1186 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1245
              PL  +   + V+C VL     V     + LSLRS     S TN  +  + V+ P   +
Sbjct: 1280 --PLEDFIPQKVVRCYVLSTEDEV-----LTLSLRS-----SKTN-PETKSRVEDP--EI 1324

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGK 1302
              I D+    +++GYVK++  +G    L   +      S +S   +       K  P G+
Sbjct: 1325 NSIHDVKKGQLLRGYVKSIEPQGVLFGLGPSVVGLAQYSKVSQYSLFKKALYNKYLPEGR 1384

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDS 1327
            L+  ++LSV      VE++   SD+
Sbjct: 1385 LLTAKILSVNHQKNLVELSFLPSDT 1409



 Score =  282 bits (722), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 138/275 (50%), Positives = 199/275 (72%), Gaps = 4/275 (1%)

Query: 1535 EERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
            EE L++ +  P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ 
Sbjct: 1591 EEALMDPRRPPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISF 1650

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1653
            REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV+L L  +Y ++E+ + 
Sbjct: 1651 REEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVYLHLADIYAKSEKFQE 1708

Query: 1654 ADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAI 1712
            A EL  +M+K+F+    VW++    LL++ Q G    V+QRAL  LPR +HI  I++ A 
Sbjct: 1709 AGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAGASHRVLQRALECLPRKEHIDVIAKFAQ 1768

Query: 1713 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1772
            LEF+ G A+R +++FE +LS YPKRTD+WS+Y+D  I+      +R +FER I LSL PK
Sbjct: 1769 LEFQLGDAERAKAIFENMLSIYPKRTDVWSVYIDMTIKHCSQKEVRDIFERVIHLSLAPK 1828

Query: 1773 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            +MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1829 RMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1863



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
            N S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V 
Sbjct: 731  NFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVV 789

Query: 1397 VKILKVDKEKRRISLGMK-SSYFKNDADNLQMSSEEESDEAIEEVGSY--NRSSLL 1449
             K+  VD+EK+R+ L ++ S     DA    +    +  E ++ V S   NR S+L
Sbjct: 790  AKVTNVDEEKQRMLLSLRLSDCMLGDAATTSLLLLNQCLEELQGVRSLMRNRDSIL 845



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 97/199 (48%), Gaps = 19/199 (9%)

Query: 1256 IVQGYVKNVT-SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
            +  G V  VT ++G  +        +V + ++SD Y E P ++F   K+V   VLS E  
Sbjct: 1241 VAMGRVAKVTPNEGLMVSFPFGKMGRVSVFHVSDSYSEMPLEDFIPQKVVRCYVLSTE-- 1298

Query: 1315 SKRVEVTLKTSDSRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
             + + ++L++S +   ++S     EIN++ ++  G ++ G +K +E  G+   +   ++V
Sbjct: 1299 DEVLTLSLRSSKTNPETKSRVEDPEINSIHDVKKGQLLRGYVKSIEPQGVLFGL-GPSVV 1357

Query: 1370 GLCHVSELSEDHVDNIETIYRA----GEKVKVKILKVDKEKRRISLG-MKSSYFKND--- 1421
            GL   S++S+  +   + +Y      G  +  KIL V+ +K  + L  + S   K D   
Sbjct: 1358 GLAQYSKVSQYSLFK-KALYNKYLPEGRLLTAKILSVNHQKNLVELSFLPSDTGKPDVFP 1416

Query: 1422 -ADNLQMSSEEESDEAIEE 1439
             +  L +S +EE     EE
Sbjct: 1417 ASPELPLSKQEERKIEAEE 1435


>gi|328767961|gb|EGF78009.1| hypothetical protein BATDEDRAFT_13567 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1670

 Score =  418 bits (1074), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 418/1535 (27%), Positives = 704/1535 (45%), Gaps = 206/1535 (13%)

Query: 353  TGILKASAFEGLVFTH-SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 411
            T I+  + F+    T  S ++PG +V   +  V   G  +       A     H+    I
Sbjct: 261  TKIISLTFFDLFYMTELSHIRPGSLVTATIQDVLENGLALHIFKFFSATIDWFHLGNGHI 320

Query: 412  VKPG---KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
                    +FK G ++  RVL + +  K+I +T    L+  K     S+   T  +  + 
Sbjct: 321  SDKNDIKNQFKKGQKVASRVLYLNTAEKKIGLTLIPELILQKSPNFKSFEIGT--VSENI 378

Query: 467  WITKIEK-HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 525
             + +++   G  V++     G+   S +  D   +    +  G   + RI+     +  +
Sbjct: 379  TVLRVDPLFGLLVQYPGDRLGYVHMSRIADDHITKIDKAFRTGTTHRGRIVDHDYCNNLL 438

Query: 526  NLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 581
             ++F   P  V++  L    +K G  V G +  +TP+ VVV V       G  P+ H +D
Sbjct: 439  LIAFA--PKIVNQPFLRLVDIKAGIKVKGQIRRITPSGVVVSVTDS--INGFCPSNHFSD 494

Query: 582  HLEHATVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 634
                      + +P   F +       +L +++    L+L+ K SL+ S  +LP+  S+ 
Sbjct: 495  --------VKIARPEKLFKEGATVAFHVLSVNSADKQLILTHKKSLMES--KLPTITSYT 544

Query: 635  --HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
               P  +  G + ++   GC V F   +    P  +  + +       + +GQ+++  ++
Sbjct: 545  EAQPGQITMGIITSVKNFGCIVSFYNNVHAIVPIVELSETRMDTPQDHFKIGQAIKCRVV 604

Query: 693  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG---FII 749
             V++        L +  C    ASF         K+A L      G++L  V G     +
Sbjct: 605  SVDA--------LNEKMC----ASF---------KLAAL------GNKLDSVSGTSTIQV 637

Query: 750  GSVIEG-KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            G + +G  V +S D   V+S    +D+      H       +  ++ Q+    +    ++
Sbjct: 638  GQIYDGIVVTKSKD--TVISRVNDTDLVSISKSH-----LSDYPTIAQSLYDSLNTGSKI 690

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKENYLVL 863
                L  + ID++ +    R   K     +  +D GV +  + I +      V+  Y  L
Sbjct: 691  T--GLLAINIDKYGKPLITR---KHSLIFQVQQDNGVRKASDMINDQVCFGFVRNIYGKL 745

Query: 864  SLPEYNH----SIGYASVSDYNTQKFPQKQFLNGQSVIA----TVMALPSSSTAGRLLLL 915
               E+      ++   ++SD N      +    GQSV A       A   + T  R+L +
Sbjct: 746  CFVEFTGGVVGAVSLQNISD-NFVSSVSEHLQIGQSVTAYQVPAWTATQVAFTQQRILAM 804

Query: 916  LKAISETETSSSKRAKKK---------SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 966
            L   ++ +     R  +           S     L++  +       + +       GRI
Sbjct: 805  LPKATKVKDMVQNRVLENPVDPHLSSLQSIKPDMLIKCTVKSFDDTYINVCIADNLDGRI 864

Query: 967  HITEVNDDKSNVVE--NLFSNFKIGQTVTARII----------AKSNKPDMKKSFLWELS 1014
              TE+ D    + +     ++F+IGQ++ A++I            +N     K    +L+
Sbjct: 865  QATEIFDSFDQITDPKQPMASFQIGQSLQAKVIEVHIFKPHFHMTTNDKKSPKKVWIDLT 924

Query: 1015 IKPSML-------TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1067
            ++PS +       T S+I  KL   E    IG    G +  + +    + I   L   +F
Sbjct: 925  VRPSFIATENALTTASQIRPKLKTLE----IGSEHIGCIQHIGSRTLRILIQGGLLGDVF 980

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +D + +   +      F +G+ +   V+  + +KK   L L     G S K VD+    
Sbjct: 981  NMDISKDVDVVNNASSHFAVGQLIKCFVIFKDTQKKTFNLSLV----GASQKPVDM---- 1032

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
                   G  V G ++KI   + G+ ++IG H+  RVH T+L            DE    
Sbjct: 1033 ----FSVGQKVVGYVAKI-DPLKGINIRIGSHIIARVHITDLA-----------DEFNES 1076

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
            P   Y   Q V+  V+ I  T     H   SLR S              D   P   +  
Sbjct: 1077 PTDIYTIRQLVQAVVVRID-TENNLIHC--SLRKSA----------FKPDTKFP---IFP 1120

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
                    IVQGY+++++ KGCF+ L+  +  +V +  LSD +V   +  F  G LV GR
Sbjct: 1121 FSSFQKGSIVQGYIQSISEKGCFVGLTNDIYGRVKMCELSDSFVVDWKSAFKPGMLVKGR 1180

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            ++S+   SK++E++ K S   T     +   S++ VG    G I+R+E YGLFI ++N+ 
Sbjct: 1181 IISINTNSKQIELSFKKS-LVTNDAGNLLKFSDIKVGQKSEGVIRRIEDYGLFIVLKNSE 1239

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            L GLCHV E+++  V N+E++Y  G+ V   +L+ + +K++ISL +K S F ND D L+ 
Sbjct: 1240 LCGLCHVLEVADRPVKNLESLYSIGDSVMTVVLRTNPKKQQISLSIKPSRF-NDDDVLEN 1298

Query: 1428 SSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNL 1487
            S EE   ++ E   S N S+ +++     ++ +ME  D   +  +               
Sbjct: 1299 SIEEAKVQSSE---SENDSAFVDDE----ENDEMEQSDDEDINFSW-------------- 1337

Query: 1488 DDEQPDMDNGISQNQG-------------HTDEAKTIDEKNNRHAKKKEKEEREQEIRAA 1534
             D QP  +  +  +                +D  +    K  R AKK+E+ + E+ I   
Sbjct: 1338 -DTQPTAEKSVMHDSDSDSSSDSMQSGDDESDGDQQNKNKRKRRAKKRERAQEEKRIANK 1396

Query: 1535 EERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
            E  L+E D  P T ++FERL+  SPN+S++WIKYM F L+MA++EKAR +AERAL+TIN 
Sbjct: 1397 ELELVEGDHPPETAEDFERLLLGSPNNSYIWIKYMVFYLNMAEIEKARQVAERALKTINF 1456

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1653
            REE E+LNIW+A+ NLEN YGN   + + KV +RA+Q  D K V+  +  +YERT +++L
Sbjct: 1457 REEQERLNIWIAFLNLENTYGNV--DTLSKVLERAIQMNDAKTVYFHMAKIYERTGKDEL 1514

Query: 1654 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1712
              +L   M KKFK S +VW+     LL   +Q+  + ++ R++ SLP+ KH+   S+ A 
Sbjct: 1515 CIKLYQTMCKKFKDSRQVWVSYACFLLTHGKQDAARQLLSRSMQSLPKRKHVDVTSKFAQ 1574

Query: 1713 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1772
            LEF +G  +RGR++FEG+++  PKRTDLWS+Y+D EIR GD+ ++R LF+R +      +
Sbjct: 1575 LEFNHGEPERGRTIFEGLMNSCPKRTDLWSVYIDMEIRAGDISIVRRLFDRVVQREWSAR 1634

Query: 1773 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            KMKF FKKY E+EK  G+E  ++ VKQ A+++VES
Sbjct: 1635 KMKFFFKKYFEFEKKHGDENGVQNVKQAAIKFVES 1669



 Score =  322 bits (826), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 355/1370 (25%), Positives = 587/1370 (42%), Gaps = 213/1370 (15%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL---------DNEIEANE 54
            + +  GM L GVV ++N  ++V+ LP  L G     +  D I          DNE E  +
Sbjct: 84   KKLDVGMCLLGVVKDINSLEMVVSLPNQLTGFVSLTEISDYISKQVEAAVDSDNEDEDTD 143

Query: 55   DNL-------LPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 104
             N        LP++   F +GQ V C ++  D   K    ++I LSL+   + +G+    
Sbjct: 144  MNSSAKDELDLPSLESYFQIGQSVVCKIISADQTSKN---KRIDLSLKPEAVNEGIEKTN 200

Query: 105  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 164
            +  GMVL   V S EDHGYIL  G+   +GFL      E++   +    LL        +
Sbjct: 201  IVSGMVLPMCVTSKEDHGYILSLGIKGVSGFLKN----EHASAYLSSKNLL-------GK 249

Query: 165  TRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGT 223
            T  +V L+ +   +      DL  ++ +  + PG +V+  +Q +LENG+ L    +F+ T
Sbjct: 250  TFCLVSLNLEYTKIISLTFFDLFYMTELSHIRPGSLVTATIQDVLENGLALHIFKFFSAT 309

Query: 224  VDIFHLQNTFPT--TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-SHV 280
            +D FHL N   +   + KN + + +KV +R+L+++   + +GLTL P L+  ++P     
Sbjct: 310  IDWFHLGNGHISDKNDIKNQFKKGQKVASRVLYLNTAEKKIGLTLIPELILQKSPNFKSF 369

Query: 281  KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 340
            ++G + +   V+RVD   GLL+  P   +    YV +S +A++ + K++K ++ G+  R 
Sbjct: 370  EIGTVSENITVLRVDPLFGLLVQYPGDRL---GYVHMSRIADDHITKIDKAFRTGTTHRG 426

Query: 341  RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
            RI+   +   L                  D+K G+ VKG++  +   G +V     +   
Sbjct: 427  RIVDHDYCNNLLLIAFAPKIVNQPFLRLVDIKAGIKVKGQIRRITPSGVVVSVTDSINGF 486

Query: 401  CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEA 458
            CP  H S+ +I +P K FK GA + F VL V S  K++ +THKK+L++SKL  ++SY EA
Sbjct: 487  CPSNHFSDVKIARPEKLFKEGATVAFHVLSVNSADKQLILTHKKSLMESKLPTITSYTEA 546

Query: 459  TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
                IT G IT ++  GC V FYN V    P  EL       P   + +GQ +KCR++S 
Sbjct: 547  QPGQITMGIITSVKNFGCIVSFYNNVHAIVPIVELSETRMDTPQDHFKIGQAIKCRVVSV 606

Query: 519  IPASRRINLSFMM-----KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 573
               + ++  SF +     K   VS    +++G +  G+V   + + V+  V        +
Sbjct: 607  DALNEKMCASFKLAALGNKLDSVSGTSTIQVGQIYDGIVVTKSKDTVISRV--NDTDLVS 664

Query: 574  IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPS--D 630
            I   HL+D+   A  +   +  G +   LL ++ ++    L++ K+SLI   QQ      
Sbjct: 665  ISKSHLSDYPTIAQSLYDSLNTGSKITGLLAINIDKYGKPLITRKHSLIFQVQQDNGVRK 724

Query: 631  ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 690
            AS +  + V  G+V NI    CFV F G + G        D   + +S+   +GQSV   
Sbjct: 725  ASDMINDQVCFGFVRNIYGKLCFVEFTGGVVGAVSLQNISDNFVSSVSEHLQIGQSVT-- 782

Query: 691  ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG 750
                         + +    ++T  +F Q+  L     AML  +         V+  +  
Sbjct: 783  -------------AYQVPAWTATQVAFTQQRIL-----AMLPKATK-------VKDMVQN 817

Query: 751  SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD 810
             V+E  V            + H      I    L   TV+S        ++V  A+ L  
Sbjct: 818  RVLENPV------------DPHLSSLQSIKPDMLIKCTVKS---FDDTYINVCIADNLDG 862

Query: 811  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI-VEIVKENYLVLSLPEYN 869
                T   D F +    +Q         AS  +G       I V I K ++ + +     
Sbjct: 863  RIQATEIFDSFDQITDPKQPM-------ASFQIGQSLQAKVIEVHIFKPHFHMTT----- 910

Query: 870  HSIGYASVSDYNTQKFPQKQFLN---GQSVIATVMALPSSSTAGRLLLLLKAISETETSS 926
                       N +K P+K +++     S IAT  AL                    T++
Sbjct: 911  -----------NDKKSPKKVWIDLTVRPSFIATENAL--------------------TTA 939

Query: 927  SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF 986
            S+   K  + ++GS     I  I    LR+    G  G +   +++ D  +VV N  S+F
Sbjct: 940  SQIRPKLKTLEIGSEHIGCIQHIGSRTLRILIQGGLLGDVFNMDISKD-VDVVNNASSHF 998

Query: 987  KIGQTVTARIIAKSNKPDMKKSFLWEL---SIKPSMLTVSEIGSKLLFEECDVSIGQRVT 1043
             +GQ +   +I K  +   KK+F   L   S KP  +                S+GQ+V 
Sbjct: 999  AVGQLIKCFVIFKDTQ---KKTFNLSLVGASQKPVDM---------------FSVGQKVV 1040

Query: 1044 GYVYKVDNEWAL-LTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGHVLSI 1098
            GYV K+D    + + I  H+ A++ I D A E    P+++      + I + V   V+ I
Sbjct: 1041 GYVAKIDPLKGINIRIGSHIIARVHITDLADEFNESPTDI------YTIRQLVQAVVVRI 1094

Query: 1099 NKEKKLLRLVLR--PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1156
            + E  L+   LR   F+          S+        +G IV G I  I     G  V +
Sbjct: 1095 DTENNLIHCSLRKSAFKPDTKFPIFPFSS------FQKGSIVQGYIQSI--SEKGCFVGL 1146

Query: 1157 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1216
               +YGRV   EL +  V D  S      F P      G  VK +++ I+   +    +E
Sbjct: 1147 TNDIYGRVKMCELSDSFVVDWKSA-----FKP------GMLVKGRIISINTNSK---QIE 1192

Query: 1217 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SR 1275
            LS + SL              V     +L K  D+      +G ++ +   G FI+L + 
Sbjct: 1193 LSFKKSL--------------VTNDAGNLLKFSDIKVGQKSEGVIRRIEDYGLFIVLKNS 1238

Query: 1276 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
            +L     +  ++D  V++ E  + IG  V   VL   P  +++ +++K S
Sbjct: 1239 ELCGLCHVLEVADRPVKNLESLYSIGDSVMTVVLRTNPKKQQISLSIKPS 1288



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 120/260 (46%), Gaps = 12/260 (4%)

Query: 291  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 350
            V ++D   G+ + I S  +   A V I+D+A+E        Y     V+  ++       
Sbjct: 1043 VAKIDPLKGINIRIGSHII---ARVHITDLADEFNESPTDIYTIRQLVQAVVVRIDTENN 1099

Query: 351  LATGILKASAFEG----LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 406
            L    L+ SAF+      +F  S  + G +V+G + ++   G  V     +     +  +
Sbjct: 1100 LIHCSLRKSAFKPDTKFPIFPFSSFQKGSIVQGYIQSISEKGCFVGLTNDIYGRVKMCEL 1159

Query: 407  SEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            S+  +V     FK G  +  R++ +   SK+I ++ KK+LV +    L  +++      +
Sbjct: 1160 SDSFVVDWKSAFKPGMLVKGRIISINTNSKQIELSFKKSLVTNDAGNLLKFSDIKVGQKS 1219

Query: 465  HGWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 523
             G I +IE +G F+   N  + G     E+   P     S+Y +G  V   ++ + P  +
Sbjct: 1220 EGVIRRIEDYGLFIVLKNSELCGLCHVLEVADRPVKNLESLYSIGDSVMTVVLRTNPKKQ 1279

Query: 524  RINLSFMMKPTRVSEDDLVK 543
            +I+LS  +KP+R ++DD+++
Sbjct: 1280 QISLS--IKPSRFNDDDVLE 1297


>gi|40352805|gb|AAH64486.1| PDCD11 protein [Homo sapiens]
 gi|51593565|gb|AAH80560.1| PDCD11 protein, partial [Homo sapiens]
          Length = 1434

 Score =  417 bits (1073), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 381/1404 (27%), Positives = 648/1404 (46%), Gaps = 161/1404 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     
Sbjct: 787  DEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTP 845

Query: 750  GSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  
Sbjct: 846  GMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLE 905

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
            V +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E 
Sbjct: 906  VHVSLHQDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVET 947

Query: 869  NHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
             H   ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   + 
Sbjct: 948  GHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQ 1007

Query: 928  KRAK-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
            K ++                 KK +  +G +V   +  IKP  + +    G  G IH + 
Sbjct: 1008 KDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASH 1067

Query: 971  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKP 1017
            + DD         +  K+G+TVTAR+I      DM K+F +             ELS++P
Sbjct: 1068 ILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRP 1122

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1123 SELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1182

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQ 1129
            ++     L+   ++F +G+A+   V+  +  K  L L L  P +                
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTGPHK---------------- 1226

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
              + EG++  GR+ K+    G         L     F ++  + +      Y E    PL
Sbjct: 1227 --LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPL 1272

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
              +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+
Sbjct: 1273 EDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQ 1319

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKL 1303
            D+    +++GYV ++   G F  L   +      S++S     SP K+       P GKL
Sbjct: 1320 DIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQ---HSPSKKALYNKHLPEGKL 1376

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDS 1327
            +  RVL +      VE++    D+
Sbjct: 1377 LTARVLRLNHQKNLVELSFLPGDT 1400



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 150/337 (44%), Gaps = 57/337 (16%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVL 461

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1323 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 160/730 (21%), Positives = 275/730 (37%), Gaps = 122/730 (16%)

Query: 784  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 843
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 844  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 900
             V Q +N IVE VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIVEKVKGNGGVVSL-----SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQV 288

Query: 901  MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 951
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVHLSL 345

Query: 952  ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 975
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 976  SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1033
                 N+F+   FK G T   RII  S   +     L  LS++ S++             
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQ------YLRY 447

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1093
             D+  G  V G V  + +   L+ +   ++  +  +  A     ++  ++++HIG  V  
Sbjct: 448  HDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLA--DILMKNPEKKYHIGDEVKC 505

Query: 1094 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1153
             VL  + E K L + L+          +    D        G I+  R+        G +
Sbjct: 506  RVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFII--RVKDY-----GCI 558

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V+   ++ G V   EL    + DP   +  GQ            VK  VL          
Sbjct: 559  VKFYNNVQGLVPKHELSTEYIPDPERVFYTGQV-----------VKVVVL---------- 597

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-M 1272
            + E S    L  +S   SSD     +  G   +K + ++   +V   V   T  G  + +
Sbjct: 598  NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAV 655

Query: 1273 LSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            L   + A +  S+LSD     P        G ++  RVL +     RV +  K +   T 
Sbjct: 656  LPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGRVLLCRKPALVSTV 714

Query: 1331 SQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
               +   N S +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +    +
Sbjct: 715  EGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHF 773

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1449
              G+ V  K+  VD+EK+R+ L ++ S       +L ++S    ++ +EE+    RS + 
Sbjct: 774  VEGQTVAAKVTNVDEEKQRMLLSLRLS--DCGLGDLAITSLLLLNQCLEELQGV-RSLMS 830

Query: 1450 ENSSVAVQDM 1459
               SV +Q +
Sbjct: 831  NRDSVLIQTL 840



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 118/246 (47%), Gaps = 35/246 (14%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
            F V  +LR+++ G  S+ +  L   +  P K LE+ E      +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKTF-LCLSLTGPHK-LEEGE------VAMGRVVKVTPNEGLTV 1248

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                     V + ++SD Y E+P ++F   K+V   +LS       + ++L++S +   +
Sbjct: 1249 SFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPET 1306

Query: 1332 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
            +S     EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  + +
Sbjct: 1307 KSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPSKK 1364

Query: 1387 TIYRA----GEKVKVKILKVDKEKRRISLGMKSSYFKNDA---DNL------QMSSEEES 1433
             +Y      G+ +  ++L+++ +K  + L    S+   D    D L      Q++ +EE 
Sbjct: 1365 ALYNKHLPEGKLLTARVLRLNHQKNLVEL----SFLPGDTGKPDVLSASLEGQLTKQEER 1420

Query: 1434 DEAIEE 1439
                EE
Sbjct: 1421 KTEAEE 1426


>gi|29436556|gb|AAH49838.1| PDCD11 protein, partial [Homo sapiens]
          Length = 1436

 Score =  417 bits (1073), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 382/1404 (27%), Positives = 649/1404 (46%), Gaps = 161/1404 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     
Sbjct: 787  DEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTP 845

Query: 750  GSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  
Sbjct: 846  GMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLE 905

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
            V +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E 
Sbjct: 906  VHVSLHQDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVET 947

Query: 869  NHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
             H   ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   + 
Sbjct: 948  GHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQ 1007

Query: 928  KRAK-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
            K ++                 KK +  +G +V   +  IKP  + +    G  G IH + 
Sbjct: 1008 KDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASH 1067

Query: 971  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKP 1017
            + DD         +  K+G+TVTAR+I      DM K+F +             ELS++P
Sbjct: 1068 ILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRP 1122

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1123 SELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1182

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQ 1129
            ++     L+   ++F +G+A+   V+  +  K LL L L  P +                
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHK---------------- 1226

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
              + EG++  GR+ K+    G         L     F ++  + +      Y E    PL
Sbjct: 1227 --LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPL 1272

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
              +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+
Sbjct: 1273 EDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQ 1319

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKL 1303
            D+    +++GYV ++   G F  L   +      S++S     SP K+       P GKL
Sbjct: 1320 DIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQ---HSPSKKALYNKHLPEGKL 1376

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDS 1327
            +  RVL +      VE++    D+
Sbjct: 1377 LTARVLRLNHQKNLVELSFLPGDT 1400



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 150/337 (44%), Gaps = 57/337 (16%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVL 461

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1323 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 163/735 (22%), Positives = 275/735 (37%), Gaps = 132/735 (17%)

Query: 784  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 843
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 844  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 900
             V Q +N IVE VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIVEKVKGNGGVVSL-----SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQV 288

Query: 901  MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 951
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVHLSL 345

Query: 952  ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 975
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 976  SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1033
                 N+F+   FK G T   RII  S   +     L  LS++ S++             
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQ------YLRY 447

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-----QRRFHIG 1088
             D+  G  V G V  + +   L+ +   ++  +        P  L +      ++++HIG
Sbjct: 448  HDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLV-------PPMHLADILMKNPEKKYHIG 500

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1148
              V   VL  + E K L + L+          +    D        G I+  R+      
Sbjct: 501  DEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFII--RVKDY--- 555

Query: 1149 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1208
              G +V+   ++ G V   EL    + DP     E  F        GQ VK  VL     
Sbjct: 556  --GCIVKFYNNVQGLVPKHELSTEYIPDP-----ERVFY------TGQVVKVVVL----- 597

Query: 1209 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1268
                 + E S    L  +S   SSD     +  G   +K + ++   +V   V   T  G
Sbjct: 598  -----NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDG 650

Query: 1269 CFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
              + +L   + A +  S+LSD     P        G ++  RVL +     RV +  K +
Sbjct: 651  LEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGRVLLCRKPA 709

Query: 1326 DSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1384
               T    +   N S +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +
Sbjct: 710  LVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTS 768

Query: 1385 IETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN 1444
                +  G+ V  K+  VD+EK+R+ L ++ S       +L ++S    ++ +EE+    
Sbjct: 769  TSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS--DCGLGDLAITSLLLLNQCLEELQGV- 825

Query: 1445 RSSLLENSSVAVQDM 1459
            RS +    SV +Q +
Sbjct: 826  RSLMSNRDSVLIQTL 840



 Score = 42.4 bits (98), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 118/246 (47%), Gaps = 35/246 (14%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
            F V  +LR+++ G  S+ +  L   +  P K LE+ E      +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKTL-LCLSLTGPHK-LEEGE------VAMGRVVKVTPNEGLTV 1248

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                     V + ++SD Y E+P ++F   K+V   +LS       + ++L++S +   +
Sbjct: 1249 SFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPET 1306

Query: 1332 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
            +S     EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  + +
Sbjct: 1307 KSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPSKK 1364

Query: 1387 TIYRA----GEKVKVKILKVDKEKRRISLGMKSSYFKNDA---DNL------QMSSEEES 1433
             +Y      G+ +  ++L+++ +K  + L    S+   D    D L      Q++ +EE 
Sbjct: 1365 ALYNKHLPEGKLLTARVLRLNHQKNLVEL----SFLPGDTGKPDVLSASLEGQLTKQEER 1420

Query: 1434 DEAIEE 1439
                EE
Sbjct: 1421 KTEAEE 1426


>gi|320582873|gb|EFW97090.1| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Ogataea parapolymorpha DL-1]
          Length = 1659

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 408/1503 (27%), Positives = 694/1503 (46%), Gaps = 212/1503 (14%)

Query: 373  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--- 429
            PGM V+  V  V   G I +  G   A  PL H+  +E  +    F VG++L  RV+   
Sbjct: 295  PGMGVEALVTEVTKEGVICKLFGVGNASIPLSHLGVYEYSELKHNFAVGSKLKSRVMVSH 354

Query: 430  -GVKSKRITVT---HKKTL---VKSKLAILSSYAEATDRLITHGW--ITKIEKHGCFVRF 480
                 KR  ++   H K+L   V  + + L ++       I H +  +T   K   ++  
Sbjct: 355  VRAGDKRFLLSVLPHIKSLNANVFGETSALEAFP------IGHIFDSVTIKGKDSSYIYV 408

Query: 481  YNGVQGFAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
              G      ++ +      +   M + +G   + R++     S   NL  +    +  E 
Sbjct: 409  DVGSDFAIGQAHITRVSSTKDLDMDFKIGSTHRARVLG---YSATDNLYILTLDKQQIER 465

Query: 540  DLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMK 590
              +++     G L++  V  V     +V    + + +G +P  +++D    + E    + 
Sbjct: 466  KFLRVEDIPAGELINCEVRSVDAEKGIVVKFEEDF-EGIVPPAYMSDVKLIYPERKFKIG 524

Query: 591  SVIKPGYEFDQLLVLDNES--SNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNI 647
            S IK      ++L + N+S  S + ++ K SL+N   + + S    +         +  +
Sbjct: 525  SKIKG-----RVLRVVNQSGKSRIYVTLKKSLVNIENEDVVSSIEDVEAGKKTFATIDKM 579

Query: 648  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            + TGC VRF G +  F P S+  +           +GQ+V+  ++ V+ E  RI    K 
Sbjct: 580  LPTGCVVRFFGFVKAFLPNSEISETFVKRPEDHVKLGQTVKVRVVSVDKENNRI----KV 635

Query: 708  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVV 766
            SC  S   S MQ+                     K +   + G S+++ +V E      +
Sbjct: 636  SCRVSEVLSDMQK---------------------KTLSSIVPGRSIVDVQVVEKEKDSAI 674

Query: 767  VSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTV 816
            V   E S + G I    L     E           G+ ++  +L+     R+V LS K  
Sbjct: 675  VELTE-SGLRGIIYAGHLGEGNYEQSRAQLKKLQIGAELKTLVLEKDVRSRVVKLSAKQS 733

Query: 817  FIDRFREANSNRQAQKKK-----RKREASKDL--GVHQTV--NAIVEIVKENYLVLSLPE 867
             I         + AQ+ K     R  E S +L  G  ++V  N +          L+LP 
Sbjct: 734  LI---------KDAQQGKLPLQYRDIEVSDELLHGFVKSVTPNGVFVSFGNGLTGLALPR 784

Query: 868  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET----- 922
              H++    V D       QK F   QSV   V+ +  ++   R L+ +K  S T     
Sbjct: 785  --HAV-EKPVDDL------QKAFFTNQSVTCHVIRVDDANK--RFLVSMKKESSTTSEPA 833

Query: 923  ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VE 980
            E     + K    + VG   +A++  IK  +L ++      GRI ++E+ DD S +  V+
Sbjct: 834  ENPVDSKMKTLDDFTVGKNTKAKVKSIKQTQLNVQLADNLQGRIDVSELFDDVSEIKDVK 893

Query: 981  NLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK---LLFEE---- 1033
               S F+ G+ +  +II      D +      +S K +  TV E+ +K   +L  +    
Sbjct: 894  RPLSQFQAGEVLDVKIIGFH---DSRNHRFLPISHKRTNQTVLELSAKKSSILSHKPVVP 950

Query: 1034 ---CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1090
                D  +G   TGY+      +  +TIS +L+A++ ++D + + S+ +  ++ + +G  
Sbjct: 951  ASIGDFHLGDECTGYINNFARGFLWVTISPNLRARISLMDLSDDASKFENLEKEYPVGSV 1010

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
            V   V  ++ E  +L L  R        K +    D     +  G ++  R+ K      
Sbjct: 1011 VRAKVTDLDTEHNILSLSARS-------KAITSLED-----LEVGSVIPARVLKTRESY- 1057

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
             +VV++G  + G + F       ++D L+ Y +   D  S  D        VLE+  + +
Sbjct: 1058 -VVVELGKQVSG-ISF-------ITDALNDYTDKLDDIFSTND---ICAATVLEVDHSNK 1105

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
              +   +SLR+                 D   K +   EDLSP  +V+G+VKNV + G +
Sbjct: 1106 KVY---VSLRTK----------------DVKDKRIASYEDLSPGTVVRGFVKNVANNGVY 1146

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            + L R + A V +S+LSD Y++  ++ F + + V G++   E    ++ +TLK S+  + 
Sbjct: 1147 VALGRTVHALVRVSDLSDSYLKDWKQYFKVHQPVLGKITKSEG-ENQILMTLKQSEIDSD 1205

Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1389
            S S +     +   +I  G ++RV ++G+F+ ++ T N+ GLCH S+++++ V NIE+++
Sbjct: 1206 S-SLLKRFDQIQKDEIYEGSVRRVTNFGVFVNLDGTLNVSGLCHHSQIADNQVTNIESLF 1264

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE---SDEAIEEVGSYNRS 1446
              G++VKVKIL VD EK+++SLGMK+SYF  + +   +  EE+   SD++I +    N S
Sbjct: 1265 SEGDRVKVKILDVDHEKKQLSLGMKASYFTGETEEPAVEEEEDEVMSDDSIIDTAFGNES 1324

Query: 1447 SLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTD 1506
                 S  +  D D  +  G S       S       +V+ DDE   MD    + +    
Sbjct: 1325 EKDAESDYS-DDSDAPATGGLSAGFDWTASILDQAKEDVSEDDE---MDKPKRKKRKVVA 1380

Query: 1507 EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIK 1566
            E +T D                          L    P++  +FERL+  +P+SS +W+ 
Sbjct: 1381 EDQTAD--------------------------LNSRVPQSVSDFERLIVGNPDSSILWMN 1414

Query: 1567 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1626
            YM+F + +++++KAR I ERAL+TIN REE EKLNIW+A  NLEN +G   EE++   F+
Sbjct: 1415 YMSFQIQLSEIDKAREIGERALKTINYREEQEKLNIWIALLNLENMFGT--EESLEATFK 1472

Query: 1627 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQE 1685
            R+ QY DP  ++  L  +Y  +E+    D+L   M KKF      VW+     LL QQQ+
Sbjct: 1473 RSCQYMDPYVMYQKLAAIYIASEKVDKVDQLYTAMCKKFGSQHTSVWVAYGSFLL-QQQD 1531

Query: 1686 GVQA--VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1743
            G +A  V+ +AL  L +  H++ + + A LEF  G  + GRS+FEG+LS+ PKR DLW++
Sbjct: 1532 GERAREVLAKALQVLSKRDHVEVVKKFAQLEFSKGDPEHGRSLFEGLLSDVPKRIDLWNV 1591

Query: 1744 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803
            Y+DQEI+ GD   +  +FER ++  L  K+ KF F K+LE+E+   +++  +YVK KA+E
Sbjct: 1592 YIDQEIKFGDKKKVEAIFERVVTRKLTRKQAKFFFGKWLEFEEKHEDQKACDYVKAKAVE 1651

Query: 1804 YVE 1806
            Y +
Sbjct: 1652 YAQ 1654



 Score =  190 bits (483), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 199/767 (25%), Positives = 347/767 (45%), Gaps = 86/767 (11%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI----------------------- 45
           G  + G + +VN  ++V+ L   L G     +  DP+                       
Sbjct: 94  GSMVLGQIKQVNRMEIVLSLTDNLMGFIPITNISDPLTSQLQEFDDEQEESDEEPAYGDE 153

Query: 46  ---LDNEIEANEDNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG 99
              L N I +++    P   T F VGQ +  IV++    KK    ++I LS+  S + + 
Sbjct: 154 ENTLTNGIISSKKKSFPQLVTRFQVGQWLRAIVMESTKSKK----KRIELSIEPSKVNEP 209

Query: 100 LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVV 159
           +  E +    ++ A VKS+EDHG +L  G     GF+ + ++   S +D+   +LL  + 
Sbjct: 210 METEDLVTNAIVQASVKSVEDHGLVLDVGKEKLGGFIAKKDV--QSLVDI-GSVLLVNIA 266

Query: 160 RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 219
           +   RT     + S  + +S   T      SID ++PGM V   V  + + GV+      
Sbjct: 267 KKDGRT----LICSPINKLSAVQTIS----SIDAILPGMGVEALVTEVTKEGVICKLFGV 318

Query: 220 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYL------- 270
              ++ + HL   +  +  K+++    K+ +R++   V    +   L++ P++       
Sbjct: 319 GNASIPLSHL-GVYEYSELKHNFAVGSKLKSRVMVSHVRAGDKRFLLSVLPHIKSLNANV 377

Query: 271 LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
               +      +G I+D   +   D    + +D+ S      A++T         + L+ 
Sbjct: 378 FGETSALEAFPIGHIFDSVTIKGKDSSY-IYVDVGSDFAIGQAHIT----RVSSTKDLDM 432

Query: 331 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS-FGA 389
            +K GS  R R+LG+   + L    L     E       D+  G ++  +V +VD+  G 
Sbjct: 433 DFKIGSTHRARVLGYSATDNLYILTLDKQQIERKFLRVEDIPAGELINCEVRSVDAEKGI 492

Query: 390 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK----RITVTHKKTLV 445
           +V+F    + + P  +MS+ +++ P +KFK+G+++  RVL V ++    RI VT KK+LV
Sbjct: 493 VVKFEEDFEGIVPPAYMSDVKLIYPERKFKIGSKIKGRVLRVVNQSGKSRIYVTLKKSLV 552

Query: 446 K-SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 504
                 ++SS  +      T   I K+   GC VRF+  V+ F P SE+       P   
Sbjct: 553 NIENEDVVSSIEDVEAGKKTFATIDKMLPTGCVVRFFGFVKAFLPNSEISETFVKRPEDH 612

Query: 505 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVK--LGSLVSG--VVDVVT-- 556
             +GQ VK R++S    + RI +S      RVSE   D+ K  L S+V G  +VDV    
Sbjct: 613 VKLGQTVKVRVVSVDKENNRIKVS-----CRVSEVLSDMQKKTLSSIVPGRSIVDVQVVE 667

Query: 557 --PNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 613
              ++ +V +   G  +G I   HL + + E +      ++ G E   L++  +  S ++
Sbjct: 668 KEKDSAIVELTESGL-RGIIYAGHLGEGNYEQSRAQLKKLQIGAELKTLVLEKDVRSRVV 726

Query: 614 -LSAKYSLINSAQQ--LPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
            LSAK SLI  AQQ  LP     I   + ++HG+V ++   G FV F   LTG A    A
Sbjct: 727 KLSAKQSLIKDAQQGKLPLQYRDIEVSDELLHGFVKSVTPNGVFVSFGNGLTGLALPRHA 786

Query: 670 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
           V+    DL K ++  QSV  +++ V+    R  +S+K+   ++++ +
Sbjct: 787 VEKPVDDLQKAFFTNQSVTCHVIRVDDANKRFLVSMKKESSTTSEPA 833



 Score = 45.1 bits (105), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
            +    V  +D + K VY+S     V     KD +  S + L PG +V   V+++  NGV 
Sbjct: 1092 ICAATVLEVDHSNKKVYVSLRTKDV-----KDKRIASYEDLSPGTVVRGFVKNVANNGVY 1146

Query: 214  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 273
            ++        V +  L +++   +WK  +  H+ V  +I   +  ++ + +TL    + +
Sbjct: 1147 VALGRTVHALVRVSDLSDSY-LKDWKQYFKVHQPVLGKITKSEGENQIL-MTLKQSEIDS 1204

Query: 274  RAPP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 329
             +        ++  +IY+ S  VR     G+ +++  T ++       S +A+ +V  +E
Sbjct: 1205 DSSLLKRFDQIQKDEIYEGS--VRRVTNFGVFVNLDGT-LNVSGLCHHSQIADNQVTNIE 1261

Query: 330  KKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
              + EG  V+V+IL   H +   +  +KAS F G
Sbjct: 1262 SLFSEGDRVKVKILDVDHEKKQLSLGMKASYFTG 1295



 Score = 40.8 bits (94), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 3/155 (1%)

Query: 365  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
            + ++ D+ PG VV+G V  V + G  V     V AL  +  +S+  +    + FKV   +
Sbjct: 1121 IASYEDLSPGTVVRGFVKNVANNGVYVALGRTVHALVRVSDLSDSYLKDWKQYFKVHQPV 1180

Query: 425  VFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 482
            + ++   + + +I +T K++ + S  ++L  + +     I  G + ++   G FV     
Sbjct: 1181 LGKITKSEGENQILMTLKQSEIDSDSSLLKRFDQIQKDEIYEGSVRRVTNFGVFVNLDGT 1240

Query: 483  -GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 516
              V G    S++  +      S++  G  VK +I+
Sbjct: 1241 LNVSGLCHHSQIADNQVTNIESLFSEGDRVKVKIL 1275


>gi|54607128|ref|NP_035183.2| protein RRP5 homolog [Mus musculus]
 gi|224493305|sp|Q6NS46.2|RRP5_MOUSE RecName: Full=Protein RRP5 homolog; AltName: Full=Apoptosis-linked
            gene 4 protein; AltName: Full=Programmed cell death
            protein 11
          Length = 1862

 Score =  415 bits (1067), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 392/1411 (27%), Positives = 659/1411 (46%), Gaps = 164/1411 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 78   ESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  LD    E GK+ + LS+    + K LS + ++ GM+LT  V 
Sbjct: 138  RLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FL      E     N G   K G  L  VV  +     VV L
Sbjct: 196  SLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S +   VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+ 
Sbjct: 256  SVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE- 314

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                      Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D 
Sbjct: 315  ----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  +
Sbjct: 371  VPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++
Sbjct: 428  DELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+  G E+  RVL    ++K++ +T KKTLV SKL++++ Y  A   L THG
Sbjct: 488  IMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
             I +++ +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ 
Sbjct: 548  VIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERML 607

Query: 527  LSF-MMKPTRVSEDDL---------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF ++  +R  +  +         V++G LV   V   T   + V ++    +   +PT
Sbjct: 608  LSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH  +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I
Sbjct: 667  PHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
             P  ++ G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V
Sbjct: 727  QPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNV 786

Query: 695  NSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIG 750
            +    R+ LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G
Sbjct: 787  DESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPG 846

Query: 751  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
             V++  VHE   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V
Sbjct: 847  MVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEV 906

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  
Sbjct: 907  HVSLHQDLVNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETG 948

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS-------- 920
            H + ++ +S  N T  F  ++   GQ V  T+       T   L+L ++  +        
Sbjct: 949  HLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTRMPV 1006

Query: 921  --ETETSSSK--------------------RAKKKSSYDVGSLVQAEITEIKPLELRLKF 958
              ++ET   K                    ++KK+ S  +G  V   I  +K   + +  
Sbjct: 1007 QRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSLAIGDKVTGTIKAVKATHVVVTL 1066

Query: 959  GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF--- 1009
              GF G IH + + DD   V  +  +  K G+ VTAR+I     K++K  P     F   
Sbjct: 1067 ADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLT 1125

Query: 1010 LWELSIKPSMLTVS----EIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHL 1062
            + ELS++PS L  S       S+   E+      GQ VT +   Y V  +W  + I   +
Sbjct: 1126 ILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDI 1185

Query: 1063 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTV 1121
            + ++ +L ++     L+   ++F +G+A+   V+  +  +  L L ++ P++        
Sbjct: 1186 RGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR-------- 1237

Query: 1122 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
                      + EG++  GR+ K++    GL V       G+V    L +         Y
Sbjct: 1238 ----------LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSD--------SY 1278

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
             E    PL  +   + V+C +L  +  V     + LSLRSS     + N       ++ P
Sbjct: 1279 SEA---PLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR------IEDP 1324

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE---- 1297
               +  IED+    +++GYVK V      I L   +      S++S+     PEKE    
Sbjct: 1325 --EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNG 1380

Query: 1298 -FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
              P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1381 CLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411



 Score =  280 bits (715), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 138/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)

Query: 1525 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1583
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1573 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1632

Query: 1584 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1643
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1633 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1690

Query: 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1702
            +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +
Sbjct: 1691 IYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1750

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
            H+  I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1751 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1810

Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1811 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1855



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1324 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1383
             +   T+  S I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 523  KTLV-TSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580

Query: 1384 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 581  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611


>gi|47124316|gb|AAH70468.1| Programmed cell death 11 [Mus musculus]
          Length = 1862

 Score =  415 bits (1066), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 392/1411 (27%), Positives = 656/1411 (46%), Gaps = 164/1411 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 78   ESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  LD    E GK+ + LS+    + K LS + ++ GM+LT  V 
Sbjct: 138  RLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FL      E     N G   K G  L  VV  +     VV L
Sbjct: 196  SLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S +   VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+ 
Sbjct: 256  SVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE- 314

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                      Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D 
Sbjct: 315  ----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  +
Sbjct: 371  VPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++
Sbjct: 428  DELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+  G E+  RVL    ++K++ +T KKTLV SKL++++ Y  A   L THG
Sbjct: 488  IMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
             I +++ +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ 
Sbjct: 548  VIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERML 607

Query: 527  LSFMMKPTRVSEDD----------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +      +D            V++G LV   V   T   + V ++    +   +PT
Sbjct: 608  LSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH  +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I
Sbjct: 667  PHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
             P  ++ G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V
Sbjct: 727  QPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNV 786

Query: 695  NSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIG 750
            +    R+ LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G
Sbjct: 787  DESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPG 846

Query: 751  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
             V++  VHE   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V
Sbjct: 847  MVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEV 906

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  
Sbjct: 907  HVSLHQDLVNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETG 948

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS-------- 920
            H + ++ +S  N T  F  ++   GQ V  T+       T   L+L ++  +        
Sbjct: 949  HLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTRMPV 1006

Query: 921  --ETETSSSK--------------------RAKKKSSYDVGSLVQAEITEIKPLELRLKF 958
              ++ET   K                    ++KK+ S  +G  V   I  +K   + +  
Sbjct: 1007 QRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSLAIGDKVTGTIKAVKATHVVVTL 1066

Query: 959  GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF--- 1009
              GF G IH + + DD   V  +  +  K G+ VTAR+I     K++K  P     F   
Sbjct: 1067 ADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLT 1125

Query: 1010 LWELSIKPSMLTVS----EIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHL 1062
            + ELS++PS L  S       S+   E+      GQ VT +   Y V  +W  + I   +
Sbjct: 1126 ILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDI 1185

Query: 1063 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTV 1121
            + ++ +L ++     L+   ++F +G+A+   V+  +  +  L L ++ P++        
Sbjct: 1186 RGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR-------- 1237

Query: 1122 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
                      + EG++  GR+ K++    GL V       G+V    L +         Y
Sbjct: 1238 ----------LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSD--------SY 1278

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
             E    PL  +   + V+C +L  +  V     + LSLRSS     + N       ++ P
Sbjct: 1279 SEA---PLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR------IEDP 1324

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE---- 1297
               +  IED+    +++GYVK V      I L   +      S++S+     PEKE    
Sbjct: 1325 --EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNG 1380

Query: 1298 -FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
              P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1381 CLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411



 Score =  278 bits (711), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 137/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)

Query: 1525 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1583
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1573 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1632

Query: 1584 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1643
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1633 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1690

Query: 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1702
            +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +
Sbjct: 1691 IYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1750

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
            H+  I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1751 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1810

Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA++YVE+
Sbjct: 1811 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALDYVEA 1855



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1324 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1383
             +   T+  S I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 523  KTLV-TSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580

Query: 1384 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 581  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611


>gi|440640711|gb|ELR10630.1| hypothetical protein GMDG_04899 [Geomyces destructans 20631-21]
          Length = 1792

 Score =  415 bits (1066), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 358/1331 (26%), Positives = 635/1331 (47%), Gaps = 164/1331 (12%)

Query: 544  LGSLVSGVVDVVTPNAVVV---YV-IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 599
            +G +V G VD +  N   +   +V +A G + G +P  H+AD   H    K   K G   
Sbjct: 555  IGEVVKGKVDKLFINEAGIGGLFVKLADGIT-GLVPEMHMADVKFHHPEKK--FKQGLSV 611

Query: 600  D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
              ++L  D       L+ K +L+NS   +      I P S   G + +I+  G  V+F G
Sbjct: 612  TARVLSTDLSKRQFRLTLKKALVNSENPVFKSYEDIEPGSQSPGTIISILPGGAVVQFYG 671

Query: 659  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 718
             + GF P S+  +    D S+ ++VGQ V  ++L+V+    R+T+S K            
Sbjct: 672  TVRGFLPVSEMSESYIQDPSQHFHVGQVVNVHVLNVDPAAARLTVSCKDPAAFGLSQQSS 731

Query: 719  QEHFLLEEKIAMLQSSKHNGS-----ELKWVEGFI-IGSVIEGKVHESNDFGVVVSFEEH 772
             +   + E ++   + K N       EL  +   + +G + +G   E+ +F         
Sbjct: 732  LKKLRIGEIVSATVTEKSNDDISVELELSGLRAILPVGHLTDGS--EAKNFS-------- 781

Query: 773  SDVYGFITHHQLAGATVESGSVIQA-AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 831
                        A   +  G  +Q  A++D  +  RL+ L+ K+  +         + A 
Sbjct: 782  ------------AFKKIRVGQTLQNLAVIDKVEKNRLITLTNKSNLV---------KAAN 820

Query: 832  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 891
            ++   RE + D+  ++ V+  V+ +    + +        +   S      Q  P     
Sbjct: 821  ERTLLREFA-DVKENKIVHGFVKNITPTAVFVQFGGGVTGLLPKSKLQDEAQTLPDFGLR 879

Query: 892  NGQSVIATVMALPSSSTAGRLLLLLKAISETETS---------SSKRA--------KKKS 934
              QS+ A V+++  S    R LL +K I+ +  S          S++A            
Sbjct: 880  RLQSLTAKVLSVDQSEK--RFLLSVKDINISVPSVDGELVYHGESQKAINPVDESITAAE 937

Query: 935  SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTV 992
             + +G +  A I  +K  ++ ++      GRI ++EV +    + +  +    F   QT+
Sbjct: 938  DFTLGRVTMARIASVKETQINVQLANNIQGRIDVSEVFESWEEIKDRKHPLKQFSAKQTI 997

Query: 993  TARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVT 1043
              R++   +  + +         K+ ++ELS K +  T+      L   +  V +G    
Sbjct: 998  PVRVLGIHDAKNHRFLPITHTAGKTAVFELSAKLTK-TIESAPEALTLNK--VKVGSSWI 1054

Query: 1044 GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1103
             +V  V ++   + IS +++ ++  LD + + S L   + +F +G A+   V  I+    
Sbjct: 1055 AFVNNVRDDCLWVNISPNVRGRIGALDISDDVSLLNNLESKFPVGSAIKVSVTGIDVANN 1114

Query: 1104 LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGR 1163
             L L  R  +   S  +      +M        +V  R++K+      ++VQ+   + G 
Sbjct: 1115 RLDLSGRSARGSSSALSFQDLKKDM--------VVPARVTKVTER--QIMVQLSDKVSGP 1164

Query: 1164 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI---SRTVRGTFHVELSLR 1220
            V+ T+L +          D    +P + Y +   V+  + ++   ++ +R T      L 
Sbjct: 1165 VNLTDLTD----------DFSDANP-TIYSKNDIVRVCITDVDVPNKRIRLTTRPSRVLN 1213

Query: 1221 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1280
            SSL    +  SS               +  L  N +V+G+V NV   G F+ L   + A 
Sbjct: 1214 SSLPVKDAEVSS---------------VAQLKVNDVVRGFVNNVAENGIFVSLGGNVTAY 1258

Query: 1281 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1340
              +S+LSD Y++  +  F + +LV G+V++ +P    V+++LK+S       + I+ L++
Sbjct: 1259 TRVSDLSDAYIKEWKPSFQVDQLVKGKVIAADPALNHVQLSLKSSVVDNDYVAPIS-LND 1317

Query: 1341 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1399
            L VG  + G+I++VE +G+FI ++ + N+ GLCH SE++E+ V +++ +Y  G+ VK K+
Sbjct: 1318 LEVGQTITGKIRKVEDFGVFIVVDGSMNVSGLCHRSEMTENRVTDVKKLYSEGDAVKAKV 1377

Query: 1400 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDM 1459
            LKV+ + RR+S G+++SYFK+     Q  S+EE D  I++         +E   +   D 
Sbjct: 1378 LKVELDNRRVSFGLRASYFKD-----QSESDEEMDYGIKDG--------MEGVQLGSDD- 1423

Query: 1460 DMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEA-------KTID 1512
            D +SE+G S  L ++++  ++     + DD  PDM++ + Q  G   EA        T+D
Sbjct: 1424 DADSEEGNSGNLERVDALVAL-----SGDDSDPDMEDALQQPSGLPLEAGGFNWTASTLD 1478

Query: 1513 EKNNR----------HAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSF 1562
            + + +           +  K+K  R+  I+      L+ + P++  +FERL+ S P+SS 
Sbjct: 1479 DADQQIGVDSEEEGLASASKKKARRKPLIKVDRTGELDANGPQSTSDFERLLLSEPDSSQ 1538

Query: 1563 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1622
            +WI+YMAF + ++++ KAR +AERA++TIN+REE EK+N+W+A  NLEN YG+  ++   
Sbjct: 1539 LWIEYMAFQVKLSELAKAREVAERAIRTINMREEAEKMNVWIALLNLENAYGS--DDTTE 1596

Query: 1623 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL--L 1680
            +VF+RA +Y D  ++H  L  +Y ++ ++  ADEL   +IKKF      W      L   
Sbjct: 1597 EVFKRACEYNDAFEIHERLTSIYIQSGKHTKADELFQVLIKKFSQYPNAWYNYAHFLHYT 1656

Query: 1681 KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEF--KNGVADRGRSMFEGILSEYPKRT 1738
                +   A++ RA+ SLP H H+    + A LEF   +G  +RGR+ FEG+L+ +PKR 
Sbjct: 1657 LSSPDRAWALLPRAIQSLPSHNHLTLTIKFAALEFHSPHGSPERGRTTFEGVLATFPKRL 1716

Query: 1739 DLWSIYLDQEIRLGDVDLIRGLFER-AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYV 1797
            DLW+  LD EI+ GD  ++R LFER A S  L PK  K  FK++ E+E   G+ +  E V
Sbjct: 1717 DLWNQLLDLEIQQGDEGMVRALFERVARSKDLKPKGAKAWFKRWSEWEGKYGDAKSQEKV 1776

Query: 1798 KQKAMEYVEST 1808
            K KA+E+V +T
Sbjct: 1777 KAKAIEWVRAT 1787



 Score =  209 bits (533), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 202/753 (26%), Positives = 340/753 (45%), Gaps = 58/753 (7%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL-------- 57
           G  + G V+++N  D+ + LP  L G   L   +  L   ++  + A +           
Sbjct: 154 GSLVLGQVSKINIHDIALALPNNLTGYVPLTSISGKLTERVEMLVAAYDGASDDDSSSIA 213

Query: 58  ----LPTIFHVGQLVSCIVLQLDDDKK---EIGKRKIWLSLRLSLLYKGLSLETVQEGMV 110
               L  +F VGQ +   V+  +++     E+GKR+I LSL+      G++ + +    +
Sbjct: 214 DDIDLNDLFSVGQYLRAFVVSTNENNASGAEVGKRRIELSLQPQKANSGITAKELAPNSM 273

Query: 111 LTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRK 167
           + A V S+EDHG I+  GL   +  GF+    +     ++ ++ G ++  ++  +    K
Sbjct: 274 IMASVVSVEDHGIIMDIGLQKSAIGGFMSSKEIGYAIEMNTIQEGAVMLCMITGLSSNGK 333

Query: 168 VVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
           +V LS+D   +  SK  T      ++D  +PG  V   +  I   GV    +     T D
Sbjct: 334 IVKLSADLQKIANSKKPTYLSDAPTVDAFLPGTAVEFLLADITPRGVAGKVMGSIDVTAD 393

Query: 226 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT--SRAVGLTLNPYLL-----------H 272
           + H   +    + +  Y    KV  RI+   P    R +G++L  +++            
Sbjct: 394 LIHSGLSNAGKDLEKKYKVGSKVKGRIICTFPNVEPRKLGISLLDHVMSLSTQQAQKNAQ 453

Query: 273 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 331
              P   + +  I +++ V +V  G+GL +DI    V+   +V IS VA+ +V  L +  
Sbjct: 454 KHDPLQILPLSSIIEEATVKKVQPGIGLFVDIGVKGVN--GFVHISRVADSKVETLSESV 511

Query: 332 --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVD 385
             YK  S  R R++G+  L+G+    L+    E       D+  G VVKGKV    I   
Sbjct: 512 GPYKVDSTHRGRVVGYNSLDGIYLVSLEQRVLEQPFLQIEDLTIGEVVKGKVDKLFINEA 571

Query: 386 SFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKK 442
             G + V+   G+  L P  HM++ +   P KKFK G  +  RVL   +  ++  +T KK
Sbjct: 572 GIGGLFVKLADGITGLVPEMHMADVKFHHPEKKFKQGLSVTARVLSTDLSKRQFRLTLKK 631

Query: 443 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
            LV S+  +  SY +      + G I  I   G  V+FY  V+GF P SE+      +PS
Sbjct: 632 ALVNSENPVFKSYEDIEPGSQSPGTIISILPGGAVVQFYGTVRGFLPVSEMSESYIQDPS 691

Query: 503 SMYHVGQVVKCRIMSSIPASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPN 558
             +HVGQVV   +++  PA+ R+ +S         ++ S    +++G +VS  V   + +
Sbjct: 692 QHFHVGQVVNVHVLNVDPAAARLTVSCKDPAAFGLSQQSSLKKLRIGEIVSATVTEKSND 751

Query: 559 AVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESSNLL--LS 615
            + V +   G  +  +P  HL D  E         I+ G     L V+D    N L  L+
Sbjct: 752 DISVELELSGL-RAILPVGHLTDGSEAKNFSAFKKIRVGQTLQNLAVIDKVEKNRLITLT 810

Query: 616 AKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 673
            K +L+ +A +  L  + + +  N +VHG+V NI  T  FV+F G +TG  P+SK  D  
Sbjct: 811 NKSNLVKAANERTLLREFADVKENKIVHGFVKNITPTAVFVQFGGGVTGLLPKSKLQDEA 870

Query: 674 RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           +          QS+ + +L V+    R  LS+K
Sbjct: 871 QTLPDFGLRRLQSLTAKVLSVDQSEKRFLLSVK 903



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 18/248 (7%)

Query: 198  MMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDP 257
            M+V  RV  + E  +M+      +G V++  L + F   N    Y+++  V   I  VD 
Sbjct: 1139 MVVPARVTKVTERQIMVQLSDKVSGPVNLTDLTDDFSDAN-PTIYSKNDIVRVCITDVDV 1197

Query: 258  TSRAVGLTLNP-YLLHNRAPPSHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPV 309
             ++ + LT  P  +L++  P    +V  +  Q KV  V RG        G+ + +     
Sbjct: 1198 PNKRIRLTTRPSRVLNSSLPVKDAEVSSVA-QLKVNDVVRGFVNNVAENGIFVSLGG--- 1253

Query: 310  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVF 366
            +  AY  +SD+++  +++ +  ++    V+ +++            LK+S  +       
Sbjct: 1254 NVTAYTRVSDLSDAYIKEWKPSFQVDQLVKGKVIAADPALNHVQLSLKSSVVDNDYVAPI 1313

Query: 367  THSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
            + +D++ G  + GK+  V+ FG  +   G   V  LC    M+E  +    K +  G  +
Sbjct: 1314 SLNDLEVGQTITGKIRKVEDFGVFIVVDGSMNVSGLCHRSEMTENRVTDVKKLYSEGDAV 1373

Query: 425  VFRVLGVK 432
              +VL V+
Sbjct: 1374 KAKVLKVE 1381


>gi|380792079|gb|AFE67915.1| protein RRP5 homolog, partial [Macaca mulatta]
          Length = 1431

 Score =  415 bits (1066), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 384/1400 (27%), Positives = 654/1400 (46%), Gaps = 153/1400 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIIEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIG 750
            + E  R+ LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +     G
Sbjct: 787  DEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPG 846

Query: 751  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
              ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V
Sbjct: 847  MFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEV 906

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  
Sbjct: 907  HVSLHQDLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETG 948

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 949  HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPT 1006

Query: 929  RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 1007 RKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHAS 1066

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKP 1017
             + DD    +    +  K+G+TVTAR+I      DMK   FL            ELS++P
Sbjct: 1067 HILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSVRP 1122

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1123 SELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1182

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1130
            ++     L+   ++F +G+A+   V+  +  K  L L L             I    ++ 
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKLE- 1228

Query: 1131 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
               EG++  GR+ K+     GL V      +G++    + +  VSD    Y E    PL 
Sbjct: 1229 ---EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSIFH--VSD---SYSE---TPLE 1273

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
             +   + V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I+D
Sbjct: 1274 DFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQD 1320

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGR 1307
            +    +++GYV ++   G F  L   +      S++S           K  P GKL+  R
Sbjct: 1321 IKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHLPEGKLLTAR 1380

Query: 1308 VLSVEPLSKRVEVTLKTSDS 1327
            VL +      VE++    D+
Sbjct: 1381 VLRLNHQKNLVELSFLPGDT 1400



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 57/337 (16%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 461

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1323 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 150/692 (21%), Positives = 254/692 (36%), Gaps = 129/692 (18%)

Query: 784  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 843
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 844  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 900
             V Q +N I+E VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIIEKVKGNGGVVSL-----SVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQV 288

Query: 901  MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 951
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVRLSL 345

Query: 952  ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 975
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 976  SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1033
                 N+F+   FK G T   RII  S   +     L  LS++ S++             
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQ------YLRY 447

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-----QRRFHIG 1088
             D+  G  V G V  + +   L+ +   ++  +        P  L +      ++++HIG
Sbjct: 448  HDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLV-------PPMHLADILMKNPEKKYHIG 500

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1148
              V   VL  + E K L + L+          +    D        G I+  R+      
Sbjct: 501  DEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHGFII--RVKDY--- 555

Query: 1149 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1208
              G +V+   ++ G V   EL    + DP   +  GQ            VK  VL     
Sbjct: 556  --GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQV-----------VKVAVL----- 597

Query: 1209 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1268
                 + E S    L  +S   SSD     +  G   +K + ++   +V   V   T  G
Sbjct: 598  -----NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDG 650

Query: 1269 CFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
              + +L   + A +  S+LSD     P        G ++  RVL +      V +  K +
Sbjct: 651  LEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGHVLLCRKPA 709

Query: 1326 DSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1384
               T    +   N S +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +
Sbjct: 710  LVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTS 768

Query: 1385 IETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
                +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 769  TSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 40.8 bits (94), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 103/211 (48%), Gaps = 26/211 (12%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
            F V  +LR+++ G  S+ +  L   +  P K LE+ E      +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-LEEGE------VAMGRVVKVTPNEGLTV 1248

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1332 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1384
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1362

Query: 1385 IETIYRA----GEKVKVKILKVDKEKRRISL 1411
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|37359824|dbj|BAC97890.1| mKIAA0185 protein [Mus musculus]
          Length = 1866

 Score =  415 bits (1066), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 392/1409 (27%), Positives = 655/1409 (46%), Gaps = 162/1409 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 84   ESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLL 143

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  LD    E GK+ + LS+    + K LS + ++ GM+LT  V 
Sbjct: 144  RLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVS 201

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FL      E     N G   K G  L  VV  +     VV L
Sbjct: 202  SLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSL 261

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S +   VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+ 
Sbjct: 262  SVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE- 320

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                      Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D 
Sbjct: 321  ----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDD 376

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  +
Sbjct: 377  VPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQM 433

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++
Sbjct: 434  DELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD 493

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+  G E+  RVL    ++K++ +T KKTLV SKL +++ Y  A   L THG
Sbjct: 494  IMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPLITCYEGAKPGLQTHG 553

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
             I +++ +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ 
Sbjct: 554  VIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERML 613

Query: 527  LSFMMKPTRVSEDD----------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +      +D            V++G LV   V   T   + V ++    +   +PT
Sbjct: 614  LSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPT 672

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH  +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I
Sbjct: 673  PHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEI 732

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
             P  ++ G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V
Sbjct: 733  QPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNV 792

Query: 695  NSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIG 750
            +    R+ LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G
Sbjct: 793  DESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPG 852

Query: 751  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
             V++  VHE   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V
Sbjct: 853  MVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEV 912

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  
Sbjct: 913  HVSLHQDLVNR-----------KPRKLRKSSR----HQ---GIVQHLEESFAVASLVETG 954

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS-------- 920
            H + ++ +S  N T  F  ++   GQ V  T+       T   L+L ++  +        
Sbjct: 955  HLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTRMPV 1012

Query: 921  --ETETSSSK------------------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGI 960
              ++ET   K                  ++KK+ S  +G  V   I  +K   + +    
Sbjct: 1013 QRDSETVDDKGEEKEEEEEEKEEENLTVKSKKRHSLAIGDKVTGTIKAVKATHVVVTLAD 1072

Query: 961  GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LW 1011
            GF G IH + + DD   V  +  +  K G+ VTAR+I     K++K  P     F   + 
Sbjct: 1073 GFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLTIL 1131

Query: 1012 ELSIKPSMLTVS----EIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKA 1064
            ELS++PS L  S       S+   E+      GQ VT +   Y V  +W  + I   ++ 
Sbjct: 1132 ELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDIRG 1191

Query: 1065 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDI 1123
            ++ +L ++     L+   ++F +G+A+   V+  +  +  L L ++ P++          
Sbjct: 1192 RIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR---------- 1241

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
                    + EG++  GR+ K++    GL V       G+V    L +         Y E
Sbjct: 1242 --------LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSD--------SYSE 1284

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                PL  +   + V+C +L  +  V     + LSLRSS     + N       ++ P  
Sbjct: 1285 A---PLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR------IEDP-- 1328

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-----F 1298
             +  IED+    +++GYVK V      I L   +      S++S+     PEKE      
Sbjct: 1329 EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNGCL 1386

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1387 PEGKLVTAKVLRVNPMKNLIELSLLPSDT 1415



 Score =  279 bits (714), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 138/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)

Query: 1525 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1583
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1577 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1636

Query: 1584 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1643
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1637 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1694

Query: 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1702
            +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +
Sbjct: 1695 IYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1754

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
            H+  I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1755 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1814

Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1815 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1859



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 138/331 (41%), Gaps = 49/331 (14%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 331  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 390

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 391  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 428

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 429  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 468

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 469  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 528

Query: 1324 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1383
             +   T+    I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 529  KTLV-TSKLPLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 586

Query: 1384 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 587  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 617


>gi|410976033|ref|XP_003994430.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Felis catus]
          Length = 1871

 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 394/1407 (28%), Positives = 654/1407 (46%), Gaps = 168/1407 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LV+ LP GL+G  +  +  D      +E  A E+ L    
Sbjct: 75   ESLCEGMRILGCVXEVNELELVVSLPNGLKGFVQVTEICDAYTKKLSEQVAQEEPLKDLA 134

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  +     E GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 135  RLPELFSPGMLVRCVVSSVGFT--EGGKKSVKLSLNPKNVNEVLSAEALKPGMLLTGTVS 192

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G ++K G  L  V+  +     VV L
Sbjct: 193  SLEDHGYLVDIGVGGARAFLPLQKAQEYIRQKNKGAEMKVGHYLNCVIEEVKGNGGVVGL 252

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +  +G++L+FL++FTG VD  HL  
Sbjct: 253  SIGHSEVSTAIATEEQNWTLNNLLPGLVVKAQVQKVTPHGLILNFLSFFTGLVDFMHLDP 312

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIY 286
                T + N     + V A +L V P +RAV L+L P  L       R    H+  G + 
Sbjct: 313  KKAGTYFSN-----QTVRACVLCVHPRTRAVRLSLRPIFLQPGRSLTRLSCQHL--GAVL 365

Query: 287  DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 346
            +   V       G    +    +   AY  +S +++ +     + +K G+  + RI+ + 
Sbjct: 366  EDVPVQSFSSKAGATFRLKDGAL---AYARLSHLSDSKNVFNAEAFKPGNTHKCRIIDYS 422

Query: 347  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 406
             ++ LA   L+ S  E     + D+KPG +VKG V+ +  +G +V+    ++ L P  H+
Sbjct: 423  QMDELALLSLRTSVIEAQYLRYHDIKPGALVKGTVLTIKPYGMLVKVGEQIRGLVPPIHL 482

Query: 407  SEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            ++  I  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL  ++ YA+A   L T
Sbjct: 483  ADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGLQT 542

Query: 465  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            HG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R
Sbjct: 543  HGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVAVLNCEPSKER 602

Query: 525  INLSFMM--KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            + LSF +   P R        +   V +G LV   V   T + + V V+        +P 
Sbjct: 603  MLLSFKLLGDPKREHTGHSQKKRRAVSVGQLVDVKVLEKTKDGLEVAVLPHNVP-AFLPI 661

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I
Sbjct: 662  PHLSDHVANGPLLYHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKSFSEI 721

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 722  HPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNV 781

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHF---LLEEK--IAMLQSSKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D +          LEE+  +  L SS+ +   ++ +   I 
Sbjct: 782  DEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSSR-DSVLIQTLAEMIP 840

Query: 750  GSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAE 806
            G V++ +V E  + G VV F E   V G +   + +  AG  VE G   +A IL++   +
Sbjct: 841  GMVLDLEVQEVLEDGSVV-FSE-GPVPGLVLRASRYHRAGQEVEPGQKKKAVILNIDMLK 898

Query: 807  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 866
              V +SL    +        NR+A+K K+  E       HQ   AIV+ ++E++ V SL 
Sbjct: 899  LEVHVSLCHDLV--------NRKAKKLKKGSE-------HQ---AIVQHLEESFAVASLV 940

Query: 867  EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 925
            E  H   ++  S  N T +F  ++   GQ V  T+       T    LL ++  +   T 
Sbjct: 941  ETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--FLLAVEGPATKRTV 998

Query: 926  SSKR-------------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 966
               R                   A KK +  +G +V   +  IKP  + +    G  G I
Sbjct: 999  RQTRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCI 1058

Query: 967  HITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELS 1014
            H + + DD   V  +  +  K+G+TVTAR+I      DMK   FL            ELS
Sbjct: 1059 HASHILDD-VPVGTSPTAKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELS 1114

Query: 1015 IKPSML-----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQL 1066
            ++PS L     T     S    E+      GQ V  ++  Y V  +W  + I+  ++ ++
Sbjct: 1115 VRPSELEKDGCTALNTHSVSPLEKIKQYQAGQTVICFLKKYNVVKKWLEVEIAPDIRGRI 1174

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
             +L ++     L+   ++F IG+A+   V+  +  K  L L L             I   
Sbjct: 1175 PLLLTSLSFKVLKHPDKKFRIGQALKATVVGPDSSKAFLCLSL-------------IGPH 1221

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    +G++  GR+ K+ +   GL V           F ++  + +      Y E   
Sbjct: 1222 KLE----KGEVAMGRVVKV-TPKEGLTVSFP--------FGKMGTVSIFHVSDSYSEM-- 1266

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
             PL  +   + V+C VL  +  V     + LSLRS     S TN    S   D     + 
Sbjct: 1267 -PLEDFIPQKVVRCYVLSATDHV-----LTLSLRS-----SRTNPETKSKITDA---EIN 1312

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPI 1300
             I+D+    +++GYVK+V   G    L   +   V L+        SP K+       P 
Sbjct: 1313 SIQDIQEGQLLRGYVKSVQPHGVLFGLGPSV---VGLAQYPHVSQYSPSKKALYNRYLPE 1369

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            GKL+  +VLS+      VE++    D+
Sbjct: 1370 GKLLTAKVLSLNRQKNLVELSFLPGDT 1396



 Score =  293 bits (750), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 149/327 (45%), Positives = 221/327 (67%), Gaps = 5/327 (1%)

Query: 1484 EVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1542
            +V LD   P +   G S +    D+ +   +K ++  +  EK++ E+E+   EE L++  
Sbjct: 1540 DVGLDSLTPALPPRGESSDSEEDDKPQQSTQKRSKKERMLEKQKAEKELSRIEEALMDPG 1599

Query: 1543 -APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
              P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN
Sbjct: 1600 RQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLN 1659

Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1661
            +WVA  NLEN YG+P  E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +M
Sbjct: 1660 VWVALLNLENMYGSP--ESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRM 1717

Query: 1662 IKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1720
            +K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ G A
Sbjct: 1718 LKRFRQEKSVWIKYGAFLLRRGQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDA 1777

Query: 1721 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1780
            +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+
Sbjct: 1778 ERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKR 1837

Query: 1781 YLEYEKSVGEEERIEYVKQKAMEYVES 1807
            YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1838 YLDYEKQHGTEKDVQAVKAKALEYVEA 1864



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 151/333 (45%), Gaps = 53/333 (15%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
            + V   VL ++   + +RL LRP   Q G S     ++  + Q   H G ++     +  
Sbjct: 322  QTVRACVLCVHPRTRAVRLSLRPIFLQPGRS-----LTRLSCQ---HLGAVLEDVPVQSF 373

Query: 1147 SGVGGLVVQI--GPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
            S   G   ++  G   Y R+ H ++ KN+        ++   F P      G   KC+++
Sbjct: 374  SSKAGATFRLKDGALAYARLSHLSDSKNV--------FNAEAFKP------GNTHKCRII 419

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
            + S+         LSLR+S+                   ++L +  D+ P  +V+G V  
Sbjct: 420  DYSQMDELAL---LSLRTSV----------------IEAQYL-RYHDIKPGALVKGTVLT 459

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            +   G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK
Sbjct: 460  IKPYGMLVKVGEQIRGLVPPIHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK 519

Query: 1324 TS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1381
             +  +S+  +   I   ++   G    G I RV+ YG  +   N ++ GL    ELS ++
Sbjct: 520  KTLIESKLPA---ITCYADAKPGLQTHGFILRVKDYGCIVKFYN-DVQGLVPKHELSAEY 575

Query: 1382 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            V + E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 576  VPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK 608



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 100/245 (40%), Gaps = 33/245 (13%)

Query: 880  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 939
            +   K P K+F  GQ++ ATV+  P SS A   L L+                    + G
Sbjct: 1183 FKVLKHPDKKFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEKG 1226

Query: 940  SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
             +    + ++ P E L + F  G  G + I  V+D  S   E    +F   + V   +++
Sbjct: 1227 EVAMGRVVKVTPKEGLTVSFPFGKMGTVSIFHVSDSYS---EMPLEDFIPQKVVRCYVLS 1283

Query: 999  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1054
             ++        +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V     
Sbjct: 1284 ATD-------HVLTLSLRSSR-TNPETKSKITDAEINSIQDIQEGQLLRGYVKSVQPHGV 1335

Query: 1055 LLTISRHLKA-QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1113
            L  +   +     +   S Y PS+   + R    GK +T  VLS+N++K L+ L   P  
Sbjct: 1336 LFGLGPSVVGLAQYPHVSQYSPSKKALYNRYLPEGKLLTAKVLSLNRQKNLVELSFLPGD 1395

Query: 1114 DGISD 1118
             G  D
Sbjct: 1396 TGKPD 1400



 Score = 44.3 bits (103), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             + S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 716  KSFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 774

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
              K+  VD+EK+R+ L ++ S
Sbjct: 775  VAKVTNVDEEKQRMLLSLRLS 795


>gi|358374933|dbj|GAA91521.1| rRNA biogenesis protein RRP5 [Aspergillus kawachii IFO 4308]
          Length = 1823

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 364/1349 (26%), Positives = 652/1349 (48%), Gaps = 171/1349 (12%)

Query: 542  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
            V +G++V G V+  ++  N V  ++ V+A G + G +P+ H AD        K   + G 
Sbjct: 559  VTVGAVVKGKVEKLLIGANGVDGLIVVLADGIT-GLVPSMHFADTPLQFPEKK--FREGM 615

Query: 598  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
                ++L ++ E   + L+ K SL+NS   +  D   I P +   G +  I   G  V+F
Sbjct: 616  TVSTRILSVNLEKRQIRLTLKKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAVVQF 675

Query: 657  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
             G + GF P S+  +    D S+ + +GQ V  + L V++   ++ +S K         +
Sbjct: 676  YGSIRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDASREKLAVSCKDP------ET 729

Query: 717  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES----NDFGVVVSFEEH 772
            F + +    E I       H G         + G+V E    ++    +D+G+V      
Sbjct: 730  FTEAYRKAFENI-------HPGM-------LVSGTVFEKSADDTLLKLDDYGLVARLNVE 775

Query: 773  SDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 831
              V G  +      + +  G  + +  ++D+ +A RL+ ++               RQ+ 
Sbjct: 776  HVVDGSPSKQASTLSKIRVGQKLNELMVIDIQRAHRLIRVT--------------GRQSL 821

Query: 832  KKKRKREA----SKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQK 884
            KK  K  +     +DL     V   +  +  N + +        IG      V D N  K
Sbjct: 822  KKAAKHGSIPSKFEDLKEGADVTGFIRNITMNGVFVEF--LGGVIGLVPKRLVGDENVNK 879

Query: 885  FPQKQFLNGQSVIATVMAL------------PSSST-AGRLLLLLKAISETETSSS---- 927
             P      GQ V ATV ++            PS +T AG           T T  +    
Sbjct: 880  -PDYDMARGQVVTATVHSVDADFKRFILSMNPSEATHAGAKKKAAAKPEPTPTDDAVANA 938

Query: 928  --KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLF 983
              +  K  S +  G + + ++  ++  ++ ++      GRI ++EV D   ++ +     
Sbjct: 939  IDEGIKSMSDFTFGRVTKCKVVSVRATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPL 998

Query: 984  SNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEEC 1034
              F+  Q ++ARI+   +  + K         K  ++ELS+KPS L  +   S L  E+ 
Sbjct: 999  RFFRPKQVISARILGIHDARNHKFLPISHRTGKFPVFELSVKPSFLQAANP-SPLNLEQ- 1056

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
             V +G    G+V  V ++   + +S +++ +L ++D++ + S L + ++ + +G A+  H
Sbjct: 1057 -VQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASDDLSLLADVEKHYPVGSALKVH 1115

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            V +++ +K  L L  +   D +  + V +           G ++ GR++K+      +++
Sbjct: 1116 VSAVDADKGRLDLSAKQRSDKLVFEDVSV-----------GMVLPGRVTKVTER--QVIM 1162

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
            Q+   + G V   ++ +          D  + +P + Y + + ++  V+ I +  +    
Sbjct: 1163 QLSKSIVGAVDLIDMAD----------DFSKANP-TVYQKNEVLRACVVAIDKANK---K 1208

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            + LSLR S           LS+ +    K +  I+ L  N IV+G+++ V   G F+ + 
Sbjct: 1209 ISLSLRPS---------KVLSSSLPVQDKEITSIKQLKVNDIVRGFIRRVADNGLFVTVG 1259

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
            R + A V +S+LSD Y++  +  F   +LV GRV   +    +++++LK S      ++ 
Sbjct: 1260 RDVTAYVRISDLSDSYLKEWKDSFQADQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAP 1319

Query: 1335 INNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGE 1393
            I  L +L  G IV G++++VE +G F+ I+ + N+ GLCH SE++E  V++  T+Y  G+
Sbjct: 1320 IT-LHDLKPGQIVTGKVRKVEEFGAFVVIDGSKNISGLCHRSEMAEGRVEDARTLYEEGD 1378

Query: 1394 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN-RSSLLENS 1452
             VK KILK+D+++ +IS G+K+SYF  + D+ +   ++    +++  G  +   S  E S
Sbjct: 1379 AVKAKILKIDRKQEKISFGLKASYFDEEEDSDEEEDDDSEGVSLDGFGGVDVDGSDDEES 1438

Query: 1453 SVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGI-------SQNQGHT 1505
             V++  +D+E +          +   +  P + +        D G+       S N    
Sbjct: 1439 DVSMGGVDLEGDSDEESEEESDDEEMTDAPAKASR------KDGGLGAGGFDWSGNNQDD 1492

Query: 1506 DEAKT-IDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1564
            DEA    D  +   ++ K+K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W
Sbjct: 1493 DEAGARSDSDDEEDSRPKKKKNRKPEIQVDRTGDLDANGPQSVADYERLLLGEPDSSLLW 1552

Query: 1565 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1624
            ++YMAF L + +VEKAR IAERAL+TI I ++ EKLNIWVA  NLEN YGN  ++ +  V
Sbjct: 1553 LQYMAFQLELGEVEKAREIAERALRTITIGQDAEKLNIWVAMLNLENTYGN--DDTLEDV 1610

Query: 1625 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQ 1683
            F+RA QY D ++V+   + +Y ++ +N+ AD+L    + KK   S K ++     L    
Sbjct: 1611 FKRACQYNDTQEVYERTISIYIQSGKNEKADDLFQTALKKKVFGSPKFFVNYASFLFDTM 1670

Query: 1684 Q--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTD 1739
               E  +A++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PK+ D
Sbjct: 1671 AAPERARALLPRALQSLPSHTHVELTSKFGQLEFRSANGDIERGRTVFEGLLSSFPKKID 1730

Query: 1740 LWSIYLDQEIRLGDVDLIRGLFERAISL----------------SLPPKKMKFLFKKYLE 1783
            LW+I LD EI+ GD + +R LFER + +                 + PK+ KF FKK+L 
Sbjct: 1731 LWNILLDLEIKNGDAEQVRRLFERVLGIRDTKKGGAAAAVEASKKVRPKQAKFFFKKWLS 1790

Query: 1784 YEKSV-----GEEERIEYVKQKAMEYVES 1807
            +E+ +     G ++ +E +K KA +YV+S
Sbjct: 1791 FEEKLASAEGGNDKMVEEIKAKAADYVKS 1819



 Score =  156 bits (395), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 182/757 (24%), Positives = 327/757 (43%), Gaps = 58/757 (7%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE------------ 51
           + +  G  + G V+ +N  D+ + LP  L G      ++  +L+ +IE            
Sbjct: 161 KRVVPGTMVLGQVSSINAHDIGLSLPNNLTGYVPLT-SVSKVLEEKIEKILKDDGSDEEE 219

Query: 52  ---ANEDNLLPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETV 105
               ++   L   F++GQ +   V+       D     +++I LS+       GLS   +
Sbjct: 220 DDEDDDSLDLHKYFYLGQYLRAYVVSAGSNAADASAKSRKRIELSVDPRQANSGLSKSDL 279

Query: 106 QEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSI 162
                + A V S+EDHG ++  GL      GF+    +  +     +K G +   +V   
Sbjct: 280 VVNSAVQASVVSVEDHGLVMDLGLEGGEVKGFMSSKEVDPKTQPSTIKEGSVFLCMVTGQ 339

Query: 163 DRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
           +    V+ LS++  +              +I   +PG      +  +   G+    +   
Sbjct: 340 NANGSVIKLSANLQSAGSIKKSHYLSTAPTITSFLPGTAAEILLTDVSSTGMAGKIMGML 399

Query: 221 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH---NRA 275
             TVD+     +    +    Y+   K+  R++   P++    VG +L  ++        
Sbjct: 400 DATVDLVQSGGSSGKDDLTKKYSTGAKIKGRLVCTFPSAEPYKVGFSLLDHVAKFATEGG 459

Query: 276 PPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 331
           P S      +  I  ++KVV+V+ GLG+ + I ST      +V +S +A+ +V  +  + 
Sbjct: 460 PGSSDDAPAISAIVPEAKVVKVEPGLGVYVQIGST--KHLGFVHVSRLADGQVETISPEL 517

Query: 332 --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVD 385
             ++  S    R++G+  ++ L     +    +       DV  G VVKGKV    I  +
Sbjct: 518 GPFRVESVHEGRVVGYSAIDNLYLLSFEKKVIDQPFLRVEDVTVGAVVKGKVEKLLIGAN 577

Query: 386 SF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 442
              G IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +T KK
Sbjct: 578 GVDGLIVVLADGITGLVPSMHFADTPLQFPEKKFREGMTVSTRILSVNLEKRQIRLTLKK 637

Query: 443 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
           +L+ S+ AI   Y E T    + G I KI+ HG  V+FY  ++GF P SE+      +PS
Sbjct: 638 SLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAVVQFYGSIRGFLPVSEMSEAYIKDPS 697

Query: 503 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTP 557
             + +GQVV    + S+ ASR         P   +E      + +  G LVSG V   + 
Sbjct: 698 QHFRLGQVVNVHAL-SVDASREKLAVSCKDPETFTEAYRKAFENIHPGMLVSGTVFEKSA 756

Query: 558 NAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSNLLL- 614
           +  ++ +   G     +  EH+ D    + A+ + S I+ G + ++L+V+D + ++ L+ 
Sbjct: 757 DDTLLKLDDYGLV-ARLNVEHVVDGSPSKQASTL-SKIRVGQKLNELMVIDIQRAHRLIR 814

Query: 615 -SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
            + + SL  +A+   +PS    +   + V G++ NI   G FV FLG + G  P+    D
Sbjct: 815 VTGRQSLKKAAKHGSIPSKFEDLKEGADVTGFIRNITMNGVFVEFLGGVIGLVPKRLVGD 874

Query: 672 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
                       GQ V + +  V+++  R  LS+  S
Sbjct: 875 ENVNKPDYDMARGQVVTATVHSVDADFKRFILSMNPS 911



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 178/406 (43%), Gaps = 45/406 (11%)

Query: 61   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 107
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1000 FFRPKQVISARILGIHDARNHKFLPISHRTGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1059

Query: 108  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 161
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1060 GSTWVGFVNNVADDCLWINLS-PNVRGRLRLMDASDDLSLLADVEKHYPVGSALKVHVSA 1118

Query: 162  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
            +D  +  + LS+   +  K V +D   +S+ +++PG     RV  + E  V++       
Sbjct: 1119 VDADKGRLDLSAKQRS-DKLVFED---VSVGMVLPG-----RVTKVTERQVIMQLSKSIV 1169

Query: 222  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 281
            G VD+  + + F   N    Y +++ + A ++ +D  ++ + L+L P  + + + P   K
Sbjct: 1170 GAVDLIDMADDFSKAN-PTVYQKNEVLRACVVAIDKANKKISLSLRPSKVLSSSLPVQDK 1228

Query: 282  VGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 334
                  Q KV  + RG        GL + +        AYV ISD+++  +++ +  ++ 
Sbjct: 1229 EITSIKQLKVNDIVRGFIRRVADNGLFVTVGR---DVTAYVRISDLSDSYLKEWKDSFQA 1285

Query: 335  GSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIV 391
               V+ R+      +G     LK S  +       T  D+KPG +V GKV  V+ FGA V
Sbjct: 1286 DQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPITLHDLKPGQIVTGKVRKVEEFGAFV 1345

Query: 392  QFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
               G   +  LC    M+E  +      ++ G  +  ++L +  K+
Sbjct: 1346 VIDGSKNISGLCHRSEMAEGRVEDARTLYEEGDAVKAKILKIDRKQ 1391



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 154/370 (41%), Gaps = 33/370 (8%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            + +  G    G V  V +  L I L   +RG  R  DA D   D  + A+ +   P    
Sbjct: 1055 EQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASD---DLSLLADVEKHYP---- 1107

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            VG  +   V  +D DK         L L        L  E V  GMVL   V  + +   
Sbjct: 1108 VGSALKVHVSAVDADKGR-------LDLSAKQRSDKLVFEDVSVGMVLPGRVTKVTERQV 1160

Query: 124  ILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV 178
            I+     S  G +   ++A++      P +     +L+  V +ID+  K + LS  P  V
Sbjct: 1161 IMQLS-KSIVGAVDLIDMADDFS-KANPTVYQKNEVLRACVVAIDKANKKISLSLRPSKV 1218

Query: 179  --SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 236
              S    +D +  SI  L    +V   ++ + +NG+ ++     T  V I  L +++   
Sbjct: 1219 LSSSLPVQDKEITSIKQLKVNDIVRGFIRRVADNGLFVTVGRDVTAYVRISDLSDSY-LK 1277

Query: 237  NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVV 292
             WK+ +   + V  R+   D     + ++L   +L  + +AP +   +K G I    KV 
Sbjct: 1278 EWKDSFQADQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPITLHDLKPGQIV-TGKVR 1336

Query: 293  RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGL 351
            +V+     ++   S  +S   +   S++AE  V      Y+EG  V+ +IL   R  E +
Sbjct: 1337 KVEEFGAFVVIDGSKNISGLCHR--SEMAEGRVEDARTLYEEGDAVKAKILKIDRKQEKI 1394

Query: 352  ATGILKASAF 361
            + G LKAS F
Sbjct: 1395 SFG-LKASYF 1403


>gi|345792763|ref|XP_535003.3| PREDICTED: protein RRP5 homolog [Canis lupus familiaris]
          Length = 1870

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 392/1407 (27%), Positives = 653/1407 (46%), Gaps = 168/1407 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EV+E +LVI LP GL+G  +A +  D   +  NE  A E+ L    
Sbjct: 75   ESLREGMRILGCVKEVHELELVISLPNGLQGFVQATEICDAYTEQLNEQVAQEEPLKDLV 134

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             L  +F  G LV C+V  +     E GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 135  CLSELFSPGMLVRCVVSSVGIT--ESGKKSVKLSLNPKNVNEVLSAEALKPGMLLTGTVS 192

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +     VV L
Sbjct: 193  SLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKGNGGVVGL 252

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S  P  VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+F+G VD  HL  
Sbjct: 253  SIGPSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLTFFSGLVDFMHLDP 312

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIY 286
                T + N     + V A +L V P +RAV L+L P  L       R    H+  G + 
Sbjct: 313  KKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRPIFLQPGRSLTRLSCQHL--GAVL 365

Query: 287  DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 346
            D   V       G    +    +   AY  +S +++ +     + YK G+  + RI+ + 
Sbjct: 366  DDVPVQSFFSKAGATFRLKDGAL---AYARLSHLSDSKNIFNAEAYKPGNIHKCRIIDYS 422

Query: 347  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 406
             ++ +    L+ S  E   F + D+KPG +VKG V+ ++ +G +V+    ++ L P  H+
Sbjct: 423  QMDEMVLLSLRPSIIESQYFRYHDIKPGALVKGTVLTIEPYGMLVKVGEQIRGLIPPMHL 482

Query: 407  SEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            ++  I  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL  ++ YA+A   L T
Sbjct: 483  ADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGLQT 542

Query: 465  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            HG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R
Sbjct: 543  HGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVVVLNCEPSKER 602

Query: 525  INLSFMM--KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            + LSF +   P +        +   + +G LV   V   T + + V V+        +PT
Sbjct: 603  MLLSFKLLGDPKKEHTGHSQKKRRAISVGQLVDVKVLEKTKDGLEVSVLPHNIP-AFLPT 661

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + + I
Sbjct: 662  PHLSDHVANGPLLYHWLQAGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFAEI 721

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 722  HPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNV 781

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIG 750
            + E  R+ LSL+ S C   D +          LEE+  +     +  S L + +     G
Sbjct: 782  DEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 841

Query: 751  SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 807
             V++ +V E  + G VV F E   V G +   + +  AG  VE G   +  IL+V   + 
Sbjct: 842  MVLDLEVQEVLEDGSVV-FSE-GPVSGLVLRASKYHRAGQEVEPGQKKKVVILNVDMLKL 899

Query: 808  LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 867
             V +SL    +        NR+ +K K+  E       HQ   AIV+ ++E++ V SL E
Sbjct: 900  EVHVSLCHDLV--------NRKPKKLKKGSE-------HQ---AIVQHLEESFAVASLVE 941

Query: 868  YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS 926
              H   ++  S  N T +F  ++   GQ V  T+       T    LL ++  +   T  
Sbjct: 942  TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGMTG--FLLAVEGPAAKRTVR 999

Query: 927  SKR-------------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 967
              R                   A KK +  +G +V   +  IKP  + +    G  G IH
Sbjct: 1000 QTRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIH 1059

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSI 1015
             + + DD   V  +  +  K+G+TVTAR+I      DMK   FL            ELS+
Sbjct: 1060 ASHILDD-VPVGTSPTAKLKVGRTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSV 1115

Query: 1016 KPSML------TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLF 1067
            +PS L       ++   S  L +      GQ +  ++  Y V  +W  + I+  ++ ++ 
Sbjct: 1116 RPSELEKDGCTALNTHSSSHLEKIKQYQAGQTLICFLKKYNVVKKWLEVEIAPDIRGRIP 1175

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
            +L ++     L+   ++F IG+A+   V+  +  K  L L L             I    
Sbjct: 1176 LLLTSLSFKVLKHPDKKFRIGQALKATVVGPDSSKAFLCLSL-------------IGPHK 1222

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
            ++    +G++  GR+ K+ +   GL V           F ++  + V      Y E    
Sbjct: 1223 LE----KGEVAMGRVVKV-TPKEGLTVSFP--------FGKIGKVSVFHVSDSYSE---T 1266

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHV-ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
            PL  +   + V+C VL        T HV  LSLRS     S TN    S   D     + 
Sbjct: 1267 PLEDFVPQKIVRCYVLS------ATGHVLTLSLRS-----SRTNPETKSKITDP---EIN 1312

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPI 1300
             I+D+    +++GYVK+V   G    L   +   V   ++S     SP K+       P 
Sbjct: 1313 SIQDIQEGQLLRGYVKSVQPHGVLFGLGPSVVGLVQYPHVSQ---YSPSKKTLYNRYLPE 1369

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            GKL+  +VLS++     VE++   +D+
Sbjct: 1370 GKLLTAKVLSLKCQKNLVELSFLPNDT 1396



 Score =  289 bits (739), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 147/327 (44%), Positives = 221/327 (67%), Gaps = 5/327 (1%)

Query: 1484 EVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1542
            +V LD   P +   G S +    ++ +   +K ++  +  EK++ E+E+   EE L++  
Sbjct: 1539 DVGLDSLTPALPPRGESSDSEEDNKPQQSTQKKSKKERMLEKQKAEKELSRIEEALMDPG 1598

Query: 1543 -APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
              P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN
Sbjct: 1599 RQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLN 1658

Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1661
            +WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +M
Sbjct: 1659 VWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYNKSEKFQEAGELYNRM 1716

Query: 1662 IKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1720
            +K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ G A
Sbjct: 1717 LKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDA 1776

Query: 1721 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1780
            +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+
Sbjct: 1777 ERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKR 1836

Query: 1781 YLEYEKSVGEEERIEYVKQKAMEYVES 1807
            YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1837 YLDYEKQHGTEKDVQAVKAKALEYVEA 1863



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 151/333 (45%), Gaps = 53/333 (15%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGG-RISKI 1145
            +AV   VL ++   + +RL LRP   Q G S     ++  + Q   H G ++    +   
Sbjct: 322  QAVRACVLCVHPRTRAVRLSLRPIFLQPGRS-----LTRLSCQ---HLGAVLDDVPVQSF 373

Query: 1146 LSGVGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
             S  G    ++ G   Y R+ H ++ KNI  ++               Y  G   KC+++
Sbjct: 374  FSKAGATFRLKDGALAYARLSHLSDSKNIFNAE--------------AYKPGNIHKCRII 419

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
            + S+       V LSLR S+              +++      +  D+ P  +V+G V  
Sbjct: 420  DYSQMDE---MVLLSLRPSI--------------IES---QYFRYHDIKPGALVKGTVLT 459

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            +   G  + +  ++   +   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK
Sbjct: 460  IEPYGMLVKVGEQIRGLIPPMHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK 519

Query: 1324 TS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1381
             +  +S+  +   I   ++   G    G I RV+ YG  +   N ++ GL    ELS ++
Sbjct: 520  KTLIESKLPA---ITCYADAKPGLQTHGFILRVKDYGCIVKFYN-DVQGLVPKHELSAEY 575

Query: 1382 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            V + E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 576  VPDPERVFYTGQVVKVVVLNCEPSKERMLLSFK 608



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 33/245 (13%)

Query: 880  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 939
            +   K P K+F  GQ++ ATV+  P SS A   L L+                    + G
Sbjct: 1183 FKVLKHPDKKFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEKG 1226

Query: 940  SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
             +    + ++ P E L + F  G  G++ +  V+D  S   E    +F   + V   +++
Sbjct: 1227 EVAMGRVVKVTPKEGLTVSFPFGKIGKVSVFHVSDSYS---ETPLEDFVPQKIVRCYVLS 1283

Query: 999  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1054
             +         +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V     
Sbjct: 1284 ATG-------HVLTLSLRSSR-TNPETKSKITDPEINSIQDIQEGQLLRGYVKSVQPHGV 1335

Query: 1055 LLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1113
            L  +   +   + +   S Y PS+   + R    GK +T  VLS+  +K L+ L   P  
Sbjct: 1336 LFGLGPSVVGLVQYPHVSQYSPSKKTLYNRYLPEGKLLTAKVLSLKCQKNLVELSFLPND 1395

Query: 1114 DGISD 1118
             G  D
Sbjct: 1396 TGKPD 1400



 Score = 45.4 bits (106), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             N + +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 716  KNFAEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 774

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
              K+  VD+EK+R+ L ++ S
Sbjct: 775  VAKVTNVDEEKQRMLLSLRLS 795


>gi|294659326|ref|XP_461694.2| DEHA2G03410p [Debaryomyces hansenii CBS767]
 gi|199433877|emb|CAG90142.2| DEHA2G03410p [Debaryomyces hansenii CBS767]
          Length = 1716

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 405/1530 (26%), Positives = 702/1530 (45%), Gaps = 228/1530 (14%)

Query: 371  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
            ++PG++V   V  +   G + +  G V A   LP++++F++     K+ +G  +  RV G
Sbjct: 317  IEPGILVDALVSDITKNGIVTKVFGLVDATINLPNLNDFDLQTLKHKYTIGNNIKARVTG 376

Query: 431  V----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG-----CFVRF- 480
            +     +KR+ ++    ++    +  S  + A D         ++E  G      FV F 
Sbjct: 377  ILLKSGTKRLMLSQLPHIISFSSS-PSDDSSALDAFPIGHIFEEVEVKGSDPNYVFVGFG 435

Query: 481  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINLSFMMKPTRVSE 538
             + + G    S++  DP       Y VG   K R++  +SI     + +   +  ++   
Sbjct: 436  SSTLHGQVHNSKI--DPSKNLEIDYSVGSKHKARVIGYNSIENLLVLTMEPKVIDSKFLT 493

Query: 539  DDLVKLGSLVSG--VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 596
             D + +G  V+G  +V V+  +  ++  I  G+ +  +P  H++D          ++ P 
Sbjct: 494  TDDIPVGEFVNGAEIVKVLPDSGGIIVKILNGF-EALVPGNHMSD--------VRLVYPE 544

Query: 597  YEFD-----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY-------- 643
             +F      +  VL  +   L  + K SL+N           I  + ++ G+        
Sbjct: 545  RKFKVGGKVKGRVLRKQGRKLFFTLKKSLVN-----------IEDDEILTGFDKATVGFK 593

Query: 644  ----VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
                V   +  G  V F G L  + P+++  +      S    +GQ+V   IL+VN +  
Sbjct: 594  SPATVEKFVHNGAIVSFFGNLRAYLPKNEISETFVNQASDHLKIGQTVNVKILNVNKDDQ 653

Query: 700  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 759
            R+ ++L+QS                   I +  S K   S+L   +      V+E KV E
Sbjct: 654  RLMVTLRQS-------------------IDLSDSQKATISDLYPGKSITTAIVVE-KVKE 693

Query: 760  SNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLV 809
            S    V+V  E +S++ G I    L+    E           G  I   +L+     R V
Sbjct: 694  S----VIVELE-NSNLRGVIFSGHLSDGNYEQNRSIFKKLPIGDKIDVLVLEKDLKSRSV 748

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEY 868
             +S K   I          +A K+       KD+ V ++ ++  ++ V    L +S    
Sbjct: 749  TVSAKASLI----------EAAKQDEVPAYFKDIKVDNKMLHGYIKSVTNMGLFISFAGK 798

Query: 869  NHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
               +  A  +     +   K+F   QSV   V+ +   +   R LL LK    ++ SS+ 
Sbjct: 799  LTGLVLAKYATDKPDEDLSKKFYKYQSVSCRVIRIDEENK--RFLLSLKKSENSKDSSNT 856

Query: 929  RA------KKKSS---YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND------ 973
                     +KS+   Y  G +  A +  IK  +L ++      GR+ IT+  +      
Sbjct: 857  EEVINPIDSEKSTVGDYTPGVITSAVVKSIKGTQLNVQLADNLQGRVDITQCFNSWSEIK 916

Query: 974  DKSNVVENLFSNFKIGQTVTARIIAKSNK------PDMKKSFLWELSIKPSMLTVSEIGS 1027
            DK   +     N KI   V     AK+++          K+ + ELSI    L   +   
Sbjct: 917  DKKQPLSQFHKNDKIKVKVIGFHDAKTHRFLPITHRKSNKNIVLELSILEKELKTPDEPY 976

Query: 1028 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1087
             +L    + S G +   Y+  V   +  ++I+  +K ++  ++ + + S   + + +  I
Sbjct: 977  HML-NLSNTSEGSKWVAYINNVAKGFVWVSITPTIKGRISFMELSDDVSVFDDIENKLPI 1035

Query: 1088 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKI 1145
            G A+   V  I+ +   + L  R              N  M T   +  GD +  R+ K+
Sbjct: 1036 GMAIEATVKDIDNDHNTVVLSAR--------------NSTMGTVKDVKVGDKLPARVLKV 1081

Query: 1146 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
                  ++V++G +L      T        D L+ Y E   +     D   F    VL +
Sbjct: 1082 RDTF--VLVELGKNLVASSFIT--------DALNDYTEKLENVFHTND---FCTATVLAV 1128

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
                +    + +SLR+                 D   K ++ IEDL+   I++G+VKNV 
Sbjct: 1129 DEESK---KIAVSLRND----------------DATDKVIDSIEDLNRGDIIRGFVKNVA 1169

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
            + G +I L R + A V +++LSD +++  +K F   + + G++ S +    R+ +TLK  
Sbjct: 1170 NNGVYIALGRSIHALVRITDLSDSFLKDWKKYFKPHQPIIGKISSCKE-EGRILMTLK-- 1226

Query: 1326 DSRTASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSEL 1377
                  +SEIN          +L VG+I  G ++RV  +G FI ++ T N+ GLCH S++
Sbjct: 1227 ------ESEINGELNVLKKFEDLEVGEIFEGSVRRVTDFGAFIKLDGTVNISGLCHHSQI 1280

Query: 1378 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-----DADNLQMSS--- 1429
            S++ V+N+ +++  G++VKVKIL +D+EK+++SLGMK+SYF N     + D+++MS    
Sbjct: 1281 SDNDVENVSSLFGEGDRVKVKILAIDQEKKQLSLGMKASYFTNADASSEQDDVEMSDAND 1340

Query: 1430 ----------EEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1479
                      E E+DE+ +EV       +LEN + A ++ + +SED          SR+S
Sbjct: 1341 QNDSGSESDDEHENDESDDEV----MEDVLENKNGASEN-ESDSEDDEE----NDNSRSS 1391

Query: 1480 -VPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERL 1538
             V  L  N  D    + +    N   +DE     EK  +    K  E++  ++       
Sbjct: 1392 GVSGLSTNGFDWTASILDQAEDNYSSSDEEDFTHEKKKKKKTSKVIEDKTADLNTR---- 1447

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
                AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1448 ----APQSVSDFERLLVGNPNSSIMWMNYMSFQLQLSEVDKAREIGERALKTINYREEQE 1503

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            K+NIW+A  NLEN +G   ++ + + F+R+ QY D   +H  L+ +Y  +E+ + ADEL 
Sbjct: 1504 KMNIWIALLNLENTFGT--DDTLEETFKRSCQYMDSLIMHQKLVSIYTMSEKFRKADELY 1561

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
              M KKF  +  +W++    LL +Q  +    V+ R+L  LP+ +HI+ + +   LEF  
Sbjct: 1562 KVMCKKFGKNVSIWVQYGSSLLDRQLNDEAHEVLARSLQVLPKREHIEVVRKFGQLEFTK 1621

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1777
            G  ++GRS+FEG++S+ PKR DLW++Y+DQEI+  +   +  LFERAI+  L  K+ KF 
Sbjct: 1622 GDPEQGRSLFEGLISDVPKRIDLWNVYIDQEIKQDNKAKVEDLFERAITKKLSRKQAKFF 1681

Query: 1778 FKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            F K+L +E+   +++    VK KA EYV+S
Sbjct: 1682 FSKWLSFEEEKNDQQFAARVKAKAAEYVQS 1711



 Score =  201 bits (511), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 183/695 (26%), Positives = 332/695 (47%), Gaps = 48/695 (6%)

Query: 57  LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
           +L  IF +GQ +   V++   D K   K++I LS+   ++   L  E +  G +L   +K
Sbjct: 181 VLKEIFKIGQWLRAKVVKPSSDSK---KKRIQLSIEPEVVNATLEDEDLTPGNLLQCSIK 237

Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAENSGI---DVKPGLLLQGVVRSIDRTRKVVYLSS 173
           SIEDHG IL+ G  +F+GF+    L  +  I   D+  G +L   + S   +R +     
Sbjct: 238 SIEDHGVILNVGRSNFSGFISNKELKNSKDIEAEDLNVGDVLLTSIVSKPSSRTITLRPV 297

Query: 174 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
             ++ SK  +      S+D + PG++V   V  I +NG++         T+++ +L N F
Sbjct: 298 QSNSTSKKASVSTIS-SVDSIEPGILVDALVSDITKNGIVTKVFGLVDATINLPNL-NDF 355

Query: 234 PTTNWKNDYNQHKKVNARI--LFVDPTSRAVGLTLNPYLLHNRAPPSHVK-------VGD 284
                K+ Y     + AR+  + +   ++ + L+  P+++   + PS          +G 
Sbjct: 356 DLQTLKHKYTIGNNIKARVTGILLKSGTKRLMLSQLPHIISFSSSPSDDSSALDAFPIGH 415

Query: 285 IYDQSKVVRVDR-----GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 339
           I+++ +V   D      G G          S+  +  + +   +  + LE  Y  GS  +
Sbjct: 416 IFEEVEVKGSDPNYVFVGFG----------SSTLHGQVHNSKIDPSKNLEIDYSVGSKHK 465

Query: 340 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGG 396
            R++G+  +E L    ++    +    T  D+  G  V G +++ V  DS G IV+   G
Sbjct: 466 ARVIGYNSIENLLVLTMEPKVIDSKFLTTDDIPVGEFVNGAEIVKVLPDSGGIIVKILNG 525

Query: 397 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSY 455
            +AL P  HMS+  +V P +KFKVG ++  RVL  + +++  T KK+LV      IL+ +
Sbjct: 526 FEALVPGNHMSDVRLVYPERKFKVGGKVKGRVLRKQGRKLFFTLKKSLVNIEDDEILTGF 585

Query: 456 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 515
            +AT    +   + K   +G  V F+  ++ + P++E+      + S    +GQ V  +I
Sbjct: 586 DKATVGFKSPATVEKFVHNGAIVSFFGNLRAYLPKNEISETFVNQASDHLKIGQTVNVKI 645

Query: 516 MSSIPASRRINLSF-----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 570
           ++     +R+ ++      +    + +  DL    S+ + +V      +V+V  +     
Sbjct: 646 LNVNKDDQRLMVTLRQSIDLSDSQKATISDLYPGKSITTAIVVEKVKESVIVE-LENSNL 704

Query: 571 KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ-- 626
           +G I + HL+D + E    +   +  G + D L++  D +S ++ +SAK SLI +A+Q  
Sbjct: 705 RGVIFSGHLSDGNYEQNRSIFKKLPIGDKIDVLVLEKDLKSRSVTVSAKASLIEAAKQDE 764

Query: 627 LPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +P+    I   N ++HGY+ ++   G F+ F G+LTG      A D    DLSK +Y  Q
Sbjct: 765 VPAYFKDIKVDNKMLHGYIKSVTNMGLFISFAGKLTGLVLAKYATDKPDEDLSKKFYKYQ 824

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
           SV   ++ ++ E  R  LSLK+S  +S D+S  +E
Sbjct: 825 SVSCRVIRIDEENKRFLLSLKKS-ENSKDSSNTEE 858


>gi|414883925|tpg|DAA59939.1| TPA: hypothetical protein ZEAMMB73_130902 [Zea mays]
          Length = 285

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/278 (71%), Positives = 240/278 (86%), Gaps = 3/278 (1%)

Query: 1535 EERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1594
            EER L++D P+TPD+FE+LVRSSPNSSF+WIKYMA +L +ADVEKAR++AERAL+TI  R
Sbjct: 2    EERALQEDIPQTPDDFEKLVRSSPNSSFIWIKYMATLLDLADVEKARAVAERALKTIIPR 61

Query: 1595 EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLA 1654
            EE EKLN+WVAYFNLENEYG+P E+AV KVFQRALQYCDPKK+HLALL +YERTEQ +LA
Sbjct: 62   EEEEKLNVWVAYFNLENEYGSPREDAVKKVFQRALQYCDPKKLHLALLAMYERTEQYELA 121

Query: 1655 DELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAI 1712
            DELL +M K+FK SCK+WL R+Q  LKQ +  E ++A+V RALLSLP  K IKF+SQTAI
Sbjct: 122  DELLDRMTKRFKTSCKIWLCRIQFALKQGKDVEYIKAIVNRALLSLPHRKRIKFLSQTAI 181

Query: 1713 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1772
            LEFK GV + GRS FE IL EYPKRTDLWS+YLDQEIRLGDV++IR LFER   L+LPPK
Sbjct: 182  LEFKCGVPEEGRSRFELILREYPKRTDLWSVYLDQEIRLGDVEVIRALFERVTCLTLPPK 241

Query: 1773 KMKFLFKKYLEYEKSVGEE-ERIEYVKQKAMEYVESTL 1809
            KM+FLFKKYL +EKS+G++ ERI+ V+QKA+EYV+S+L
Sbjct: 242  KMQFLFKKYLNFEKSLGKDNERIQLVQQKAIEYVQSSL 279


>gi|449505853|ref|XP_002193665.2| PREDICTED: protein RRP5 homolog [Taeniopygia guttata]
          Length = 1834

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 375/1400 (26%), Positives = 657/1400 (46%), Gaps = 152/1400 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANED----N 56
            + +S GM L G + EV++ +L I LP GL G   + + +DA   +L  ++   E     N
Sbjct: 80   EALSEGMLLLGCIKEVSDYELAISLPNGLSGFVPVTQISDAYSKLLTKQVAQGEVPEELN 139

Query: 57   LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP IF  G LV CIV  ++  K + G+R + LS+    + KGL+   +  GMVL+  V 
Sbjct: 140  SLPDIFSPGTLVRCIVTSVE--KSDDGRRSVKLSIDPEKVNKGLNSAALTAGMVLSGSVL 197

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP         A   G D+K G  L  ++  +    +VV L
Sbjct: 198  SVEDHGYLIDIGIAGTHAFLPHQKAKNYIKAVKKGPDLKIGQNLNCLIVEVKNEGRVVSL 257

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S D   V+  +  + +  ++  L+PG++V  RVQ +   G+ ++FL+YFTG VD  H   
Sbjct: 258  SIDRSEVAASIATERQNWTLSNLLPGLVVKARVQKVFPLGMKVTFLSYFTGIVDFMH--- 314

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
            T P  +    Y+  + V A +L V PTSRAV LTL P  LH    P  +   ++G + ++
Sbjct: 315  TDPEKSM--SYSPDQVVKACVLSVHPTSRAVRLTLRPPFLHAGGAPRQLPAQRMGAVVEE 372

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
            + V    +  G + ++      T A+  +  +++         ++EG   + RI+ +  +
Sbjct: 373  ATVKAFYKQFGAIFELDD---GTLAFARLKHLSKTRKSFKPGAFQEGCKHKCRIIAYSLM 429

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + +    LK    E     + D+  G VV+GKV+++   G  V+   G++ L P  H+S+
Sbjct: 430  DEMCIVSLKHQIIEARFLQYQDIHTGDVVQGKVLSLKPIGMQVKVADGIRGLVPSLHLSD 489

Query: 409  FEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              + +P KK+ +G E+  RVL    + K++ +T KK+LV+SKL +LS+Y +A   LITHG
Sbjct: 490  VILKQPEKKYNIGDEVKCRVLECNPEGKKLILTLKKSLVQSKLPVLSNYEDAKPGLITHG 549

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            ++    + GC V+FYN V+G  P++ELG +P   P  +++ GQV+K  ++   P   R+ 
Sbjct: 550  FVVCAREFGCIVKFYNDVKGLVPKNELGSEPISCPDKVFYEGQVLKVMVLKCEPQQERLL 609

Query: 527  LSFMMKPTRVSEDDL-----------VKLGSLVSGVVDVVTPNAVVVYVIA-KGYSKGTI 574
            LSF +      ED              ++G +V   +     N + V ++  +      I
Sbjct: 610  LSFRLSSKPGPEDKWKCTPKEKQEVKYQIGEIVDVRILKKKDNGLEVSILEDEDNVVAWI 669

Query: 575  PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDAS 632
            P  HL+D ++ + ++   ++ G    ++L L  +  +L+LS K ++I++ Q+  +  + S
Sbjct: 670  PMLHLSDFVDISKLLWHCLREGDVLPRVLYLSAKGEHLILSRKSAVISAVQEEKVVRNFS 729

Query: 633  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
             I P  ++ GYV N++  G FV F   +TG AP+    D    D    + VGQ+V + ++
Sbjct: 730  EIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVM 789

Query: 693  DVNSETGRITLSLKQSCCSSTDAS-----FMQEHFL-LEEKIAMLQSSKHNGSELKWVEG 746
              + E  R+ L+LK S CSS D++      + ++F  L+E   +L+  + +  EL  V G
Sbjct: 790  STDEEKQRVLLNLKVSECSSGDSASESFDLLNQYFKELKEIRDLLRRGEPSICEL--VPG 847

Query: 747  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 806
              +  V++  V E  D   + S    + +    T + L    +  G   +  +L V    
Sbjct: 848  KRVHLVVQ-DVRE--DGSALFSGSPVTGLTVTATRYHLGDKNIAPGEKRKVLVLHVDALT 904

Query: 807  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 866
              V +SL+   +          + + K+R RE S+        + +V+ + E++ + SL 
Sbjct: 905  SEVYVSLREELL----------KQRPKRRLRENSQH-------SVVVQHITEHFAIASLL 947

Query: 867  EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLL---------LLL 916
            E            +N T +F  ++   GQ + AT+ A+   +  G LL         + +
Sbjct: 948  ETGQLAAVPIACHFNDTFRFDSEKLRVGQKISATLKAV-KENNHGVLLAVQGPAKKNVFV 1006

Query: 917  KAISETETSSSKRAKK-KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 975
            +  +E+ET+  +     K S   G +V   +  +KP  + +       G IH + + D+ 
Sbjct: 1007 RVRNESETALEEVLPAVKHSLSPGDVVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDE- 1065

Query: 976  SNVVENLFSNFKIGQTVTARIIAKSN----------KPDMKKSFLWELSIKPS------- 1018
              +     S  + GQ VTAR+I   +           P   +S + ELSI+PS       
Sbjct: 1066 VPIGSFPTSTLQAGQKVTARVIGGRDVNTHRCLPITHPHFTQS-IPELSIRPSEQEGEFT 1124

Query: 1019 -MLTVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEP 1075
             ML + E  S  L +    ++GQ VT +V  Y +   W  + ++  ++ ++  L  +   
Sbjct: 1125 AMLNLKEESS--LKQLGLYNVGQTVTCFVKKYNMLKNWLEVEVAPDIRGRVPHLLLSLST 1182

Query: 1076 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG 1135
              L+  ++ F  G+A++  V   +  ++ L L L   Q                  + + 
Sbjct: 1183 KVLKHPEKSFKNGQAISATVTGTDATERNLCLSLTGIQS-----------------LEQD 1225

Query: 1136 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1195
             I  G ++K+   V GL + +     G+V    L N   +D          +PL  +  G
Sbjct: 1226 TISVGMVTKVTPHV-GLTIALPGGKTGKVSIFHL-NDTYTD----------NPLGNFKVG 1273

Query: 1196 QFVKCKVLEISRTVRGTFHVELSLRSS-LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            + V+C +L I         ++LSLR S L+   ++   D+          +  I+D+   
Sbjct: 1274 KIVRCYILSIENG-----KIQLSLRQSRLNPKINSKVEDI---------EITSIKDVKKG 1319

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSV 1311
             +V+GYVK++T  G F  LS  L  ++L  N+S  +V+     +K  P GKL+  +VL V
Sbjct: 1320 QLVRGYVKSITPSGVFFGLSTSLLGRILFQNVSPYFVQKHSLYKKYLPEGKLLTAKVLGV 1379

Query: 1312 EPLSKRVEVTLKTSDSRTAS 1331
                K +E++L   D+   S
Sbjct: 1380 NRKEKHIELSLLPEDTGMPS 1399



 Score =  278 bits (712), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 186/265 (70%), Gaps = 3/265 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P++ D+F+RLV  SPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 1565 PQSADDFDRLVLGSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 1624

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            VA  NLEN YG   EE ++KVF+RA+QY +P KV   L  +Y  +E+ K A+EL + M+K
Sbjct: 1625 VALLNLENMYGT--EETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLK 1682

Query: 1664 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
            +F+    VWL+    LLKQ Q E    +++RAL +LP  +H+  IS+ A LEF +G  + 
Sbjct: 1683 RFRQEKSVWLKYASFLLKQGQAEATHRLLERALKALPTKEHVDVISRFAQLEFHSGDTEH 1742

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
             +++FE  LS YPKRTD+WSIY+D  I+ G    +R +FER I LSL PKKMKF FK+YL
Sbjct: 1743 AKALFESTLSSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFFFKRYL 1802

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
            +YEK  G  E +  VK+ A+EYVE+
Sbjct: 1803 DYEKKFGTAESVLAVKRAALEYVET 1827



 Score = 40.4 bits (93), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 1329 TASQSE--INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
            +A Q E  + N S +  G ++ G ++ V  +G+F+      + GL     +S+  V + +
Sbjct: 717  SAVQEEKVVRNFSEIQPGMLLTGYVRNVMPFGVFVEFP-FGVTGLAPKVSMSDKFVTDTK 775

Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              +  G+ V  K++  D+EK+R+ L +K S
Sbjct: 776  DHFVVGQTVIAKVMSTDEEKQRVLLNLKVS 805


>gi|326923909|ref|XP_003208175.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Meleagris
            gallopavo]
          Length = 2041

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 374/1401 (26%), Positives = 648/1401 (46%), Gaps = 152/1401 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEI---EANED-N 56
            Q I  GM L G + EV   +LVI LP GL G   + + +DA   +L+ ++   E  ED N
Sbjct: 284  QEICEGMLLLGCIKEVTFFELVISLPNGLTGFVPVTQISDAYSELLNEQVTQGELLEDLN 343

Query: 57   LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             L  ++  G LV C+V  ++  K   G+R I LS+    + KGL+   +  GM+L+ +V+
Sbjct: 344  SLSDLYSPGMLVRCVVTSVE--KSADGRRSIKLSINPKNVNKGLNASALTSGMLLSGFVR 401

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP         A   G D+K G  L  ++  +    +VV L
Sbjct: 402  SVEDHGYLIDIGVRGTHAFLPHQKAQNYIKAVKRGSDLKIGQSLNCLIEEVKNEGRVVRL 461

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S+D   V+  +  + +  ++  L+PG++V  +VQ +   G+ L+FL+ FTG VD  H+  
Sbjct: 462  SADRSEVAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGISLTFLSSFTGIVDFMHVDP 521

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
               T     +Y+ ++ V A IL   PTS+ V LTL    L     P+ +   ++G + ++
Sbjct: 522  EKST-----NYSPNQVVKACILSTHPTSKVVHLTLRQAFLCPGGSPNQLSNDRIGAVVEE 576

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
            S V    +  G + ++    +   A+  +  +++         +K G   + RI+ +  +
Sbjct: 577  STVKAFYKQFGAVFELDDGML---AFARLKHLSKTRKSFKPAAFKAGCKHKCRIIDYSLM 633

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + +    LK    E     + D+  G V++GKV+++   G  V+   G+K L P  H+++
Sbjct: 634  DEMCIVSLKHQIIEARFLRYQDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLAD 693

Query: 409  FEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              + +P KK+ VG E+  RVL    + K++ +T KKTLV+SKL +LSSY +A   LITHG
Sbjct: 694  VILKQPEKKYNVGDEVRCRVLECNPEEKKLFLTLKKTLVQSKLPVLSSYEDAEPGLITHG 753

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            ++    + GC V+FYN V+G  P++EL  +P   P  ++H GQVVK  ++   P   R+ 
Sbjct: 754  FVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQERLL 813

Query: 527  LSFMMKPTRVSEDDL-----------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSK-GTI 574
            LSF +    V E               ++G +V   V     N + V ++  G      +
Sbjct: 814  LSFRLSSKPVPEGRTECTPKKKQQVKYQIGEMVDVKVLKKNENGLEVSILEDGDDVIAWL 873

Query: 575  PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDAS 632
            PT HL+D + ++ ++   ++ G    +++ L ++   ++L  K ++I++ Q  Q+    S
Sbjct: 874  PTGHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVRSFS 933

Query: 633  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
             I P  ++ GYV  ++  G FV F   +TG AP+    D    D    + VGQ+V + ++
Sbjct: 934  EIQPGVLLTGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVM 993

Query: 693  DVNSETGRITLSLKQSCCSSTDA-----SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
             ++ E  R+ L+LK S CSS D+     S + ++F   E+I  L   + +G   + +   
Sbjct: 994  SIDEEKQRVLLNLKVSECSSGDSAAESFSLLNQYFKEMEEIKNLLRRRESGLA-QCLSEL 1052

Query: 748  IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAK 804
            + G  ++  V +  + G   +    S V G+    TH+ L G  V  G   +  +L V  
Sbjct: 1053 VPGKELQLVVQDVMEDG--SALFSGSCVRGWTVTATHYHLGGKKVVPGEKAKGLVLHVDA 1110

Query: 805  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVHQTVNAIVEIVKENYLVL 863
                V +SL+   +                 K+E SK  L  +    AIV+ + E + ++
Sbjct: 1111 ITSKVYVSLREELL-----------------KKEPSKXRLTKNSQHPAIVQHIAEEFAIV 1153

Query: 864  SLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS----------TAGRL 912
            SL +          S +N T +F  ++   GQ + AT+  + ++           T    
Sbjct: 1154 SLLDSGRLAAVPIASHFNDTFRFDSEKMKVGQRIYATLKTVKANDLGVVLAVQDPTKKNA 1213

Query: 913  LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 972
             +  +  SET    +  A  K S  +G +V   +  +KP  + +       G IH +++ 
Sbjct: 1214 FVRDRKESETALEETLAAAVKHSLSLGDIVTGTVKSVKPTHVTVAIDDKLTGSIHASQIL 1273

Query: 973  DDKSNVVENLFSNFKIGQTVTARIIAKSN----------KPDMKKSFLWELSIKPSMLTV 1022
            D+        ++  K GQ VTAR+I   +           P   +S + ELSI+P     
Sbjct: 1274 DEVPIYSFPTYT-LKAGQKVTARVIGGRDVNTHRYLPITHPHFTRS-VPELSIRP----- 1326

Query: 1023 SEIGSK---LLFEECD----VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAY 1073
            SEI  K   +  + C+     ++GQ VT +V  Y +   W  + ++  ++ ++  L  + 
Sbjct: 1327 SEIEGKVETMRDDTCEKLGPYNVGQTVTCFVRKYNILKNWLEVEVAPDVRGRVPRLLLSL 1386

Query: 1074 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1133
                L+  ++ F  G+A++  V   +  +  L L L   Q                  + 
Sbjct: 1387 NTKVLKHPEKNFKNGQALSATVTGTDATETNLFLSLTGIQS-----------------LE 1429

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
             G I  G ++K++  + GL + +     G+V    L +         Y E    PLS + 
Sbjct: 1430 PGTITVGMVAKMIPHI-GLTITLPGGKTGKVSIFHLSD--------KYTE---SPLSDFK 1477

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+ V+C +L           ++LSLR S   ++  NSS +          +  I+D+  
Sbjct: 1478 IGKVVRCYILS-----NENGKIQLSLRQSR--LNPKNSSKVE------DAEITSIKDVKK 1524

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLS 1310
              +++GYVK+VT  G F  LS  L  ++L  N+S  +V+     EK  P GKL+  +VL 
Sbjct: 1525 GQLLRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLD 1584

Query: 1311 VEPLSKRVEVTLKTSDSRTAS 1331
            V      VE++L   D+   S
Sbjct: 1585 VNKNENHVELSLLPEDTEMPS 1605



 Score =  275 bits (703), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/265 (50%), Positives = 185/265 (69%), Gaps = 3/265 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P++ D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI  REE EKLN+W
Sbjct: 1772 PQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQEKLNVW 1831

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            VA  NLEN YG   EE ++KVF+RA+QY +P KV   L  +Y  +E+ K A+EL + M++
Sbjct: 1832 VALLNLENMYGT--EETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLR 1889

Query: 1664 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
            +F+    VWL+    LLKQ Q E    +++RAL +LP  +H+  IS+ A LEF+ G  + 
Sbjct: 1890 RFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFRFGDPEH 1949

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
             +++FE  L+ YPKRTD+WSIY+D  I+ G    +R +FER I L+L PKKMKF FK+YL
Sbjct: 1950 AKALFESTLNSYPKRTDIWSIYMDIMIKQGSQKEVRDIFERVIHLNLAPKKMKFFFKRYL 2009

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
            +YEK  G  E +  VK  A+EYVE+
Sbjct: 2010 DYEKKYGTTETVMAVKTAALEYVEA 2034



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 8/173 (4%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            + +D+    ++QG V ++   G  + ++  +   V   +L+D  ++ PEK++ +G  V  
Sbjct: 652  RYQDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLADVILKQPEKKYNVGDEVRC 711

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITI 1363
            RVL   P  K++ +TLK    +T  QS++  LS   +   G I  G +     +G  +  
Sbjct: 712  RVLECNPEEKKLFLTLK----KTLVQSKLPVLSSYEDAEPGLITHGFVVCAREFGCIVKF 767

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             N ++ GL   +ELS + +   + ++  G+ VKV +LK + ++ R+ L  + S
Sbjct: 768  YN-DVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQERLLLSFRLS 819



 Score = 41.2 bits (95), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSE--INNLSNLHVGDIVIGQIKRVESYGLFI 1361
            V  RV+ +     R+ +  + S   +A Q E  + + S +  G ++ G +++V  +G+F+
Sbjct: 897  VLPRVMCLSDKGDRI-ILCRKSAVISAVQEEQVVRSFSEIQPGVLLTGYVRKVMPFGVFV 955

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
                  + GL     +S+  V + +  +  G+ V  K++ +D+EK+R+ L +K S
Sbjct: 956  EFP-FGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLNLKVS 1009


>gi|74194348|dbj|BAE24688.1| unnamed protein product [Mus musculus]
          Length = 1438

 Score =  412 bits (1058), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 392/1411 (27%), Positives = 657/1411 (46%), Gaps = 164/1411 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 78   ESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  LD    E GK+ + LS+    + K LS + ++ GM+LT  V 
Sbjct: 138  RLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FL      E     N G   K G  L  VV  +     VV L
Sbjct: 196  SLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S +   VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+ 
Sbjct: 256  SVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE- 314

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                      Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D 
Sbjct: 315  ----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  +
Sbjct: 371  VPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++
Sbjct: 428  DELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+  G E+  RVL    ++K++ +T KKTLV SKL++++ Y  A   L THG
Sbjct: 488  IMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
             I +++ +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ 
Sbjct: 548  VIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERML 607

Query: 527  LSF-MMKPTRVSEDDL---------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF ++  +R  +  +         V++G LV   V   T   + V ++    +   +PT
Sbjct: 608  LSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH  +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I
Sbjct: 667  PHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
             P  ++ G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V
Sbjct: 727  QPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNV 786

Query: 695  NSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIG 750
            +    R+ LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G
Sbjct: 787  DESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPG 846

Query: 751  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
             V++  VHE   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V
Sbjct: 847  MVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEV 906

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  
Sbjct: 907  HVSLHQDLVNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETG 948

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS-------- 920
            H + ++ +S  N T  F  ++   GQ V  T+       T   L+L ++  +        
Sbjct: 949  HLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTRMPV 1006

Query: 921  --ETETSSSK--------------------RAKKKSSYDVGSLVQAEITEIKPLELRLKF 958
              ++ET   K                    ++KK+ S  +G  V   I  +K   + +  
Sbjct: 1007 QRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSLAIGDKVTGTIKAVKATHVVVTL 1066

Query: 959  GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF--- 1009
              GF G IH + + DD   V  +  +  K G+ VTAR+I     K++K  P     F   
Sbjct: 1067 ADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLT 1125

Query: 1010 LWELSIKPSMLTVSEIGSKLLFEECDVSI-----GQRVTGYV--YKVDNEWALLTISRHL 1062
            + ELS++PS L  S        E     I     GQ VT +   Y V  +W  + I   +
Sbjct: 1126 ILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDI 1185

Query: 1063 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTV 1121
            + ++ +L ++     L+   ++F +G+A+   V+  +  +  L L ++ P++        
Sbjct: 1186 RGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR-------- 1237

Query: 1122 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
                      + EG++  GR+ K++    GL V       G+V    L +         Y
Sbjct: 1238 ----------LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSD--------SY 1278

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
             E    PL  +   + V+C +L  +  V     + LSLRSS     + N       ++ P
Sbjct: 1279 SEA---PLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR------IEDP 1324

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE---- 1297
               +  IED+    +++GYVK V      I L   +      S++S+     PEKE    
Sbjct: 1325 --EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNG 1380

Query: 1298 -FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
              P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1381 CLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1324 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1383
             +   T+  S I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 523  KTLV-TSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580

Query: 1384 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 581  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611


>gi|121716713|ref|XP_001275889.1| rRNA biogenesis protein RRP5, putative [Aspergillus clavatus NRRL 1]
 gi|119404046|gb|EAW14463.1| rRNA biogenesis protein RRP5, putative [Aspergillus clavatus NRRL 1]
          Length = 1819

 Score =  411 bits (1057), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 355/1336 (26%), Positives = 661/1336 (49%), Gaps = 144/1336 (10%)

Query: 542  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGAVVKGKIEKLLIGPTGVDGLIVALADGIT-GLVPSMHFADAALQFPEKK--FREGM 610

Query: 598  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
                ++L ++ ++  + L+ K SL+NS   +  D   I P +   G + NI   G  V+F
Sbjct: 611  AITARILSVNLQNRQIRLTLKKSLLNSESAIWKDYEDIVPGAQSPGTIVNIQPHGAVVQF 670

Query: 657  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAFIKDPSQHFRQGQVVNVHALSVDPSLGKLAVSCKDP------ST 724

Query: 717  FMQEHFLLEEKI--AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
            F + +    EKI   ML            V G +     +  + + ++FG+V   +    
Sbjct: 725  FTESYKKAFEKIQPGML------------VTGTVFEKSADDLLLKLDEFGLVARLDLAHV 772

Query: 775  VYGFITHHQLAGATVESGSVIQ-AAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 833
            V G         + +  G  +    +LD+ +A RL+ +S +           S ++A K+
Sbjct: 773  VDGSYPKQSSTLSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKASKQ 822

Query: 834  KRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN 892
                   +D+     V   V  I  +   V  L      +    +++ +  K P    + 
Sbjct: 823  GSLPAKFEDVQEGTEVTGFVRNITADGLFVEFLGGITGLVPKRLLAEESASK-PDYGMVK 881

Query: 893  GQSVIATVMAL------------PSS-STAGRLLLLLKAISETETSSS---KRAKKKSSY 936
             Q V ATV ++            PS  ++AG      K     +  ++   +  +  S +
Sbjct: 882  SQIVTATVHSVDADFRRFILSMNPSELTSAGPKKPAPKPTPSNDAVANAVDESIEAMSDF 941

Query: 937  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTA 994
              G  V+ ++  +K  ++ ++      GRI ++EV D+  ++ +       F+  Q ++A
Sbjct: 942  TFGRTVKCKVVSVKATQVNVQLADNVQGRIDVSEVFDEWEDIKDRKQPLRFFRPKQIISA 1001

Query: 995  RIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1045
            RI+   +  + K         K  ++ELSIKPS L  S   + L  E+  V  G    G+
Sbjct: 1002 RILGIHDARNHKFLPISHRSGKFPVFELSIKPSFLEASN-PTPLNLEQ--VQTGSSWLGF 1058

Query: 1046 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1105
            +  + ++   + +S +++ +L  +D++ + S L + ++ F IG A+  HV +++ EK  L
Sbjct: 1059 INNIADDCLWVNLSPNVRGRLRFMDASDDLSLLADVEKHFPIGSALKVHVTAVDTEKGRL 1118

Query: 1106 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1165
             L  +   D +S   + +           G +V GR++K+      +++Q+   + G V+
Sbjct: 1119 DLAAKQRSDKLSFSDITV-----------GMVVPGRVTKVTEK--QVIMQLSDSIVGAVN 1165

Query: 1166 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1225
              +L +          D  + DP + Y++ + ++  V+ + +  +    + LSLR S   
Sbjct: 1166 LIDLSD----------DYSKADP-TVYNKNEVLRACVVGVDKANK---KISLSLRPSKVL 1211

Query: 1226 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1285
             SS +  D           +  ++ L  N +V+G+VK V   G F+ L   + A V +S+
Sbjct: 1212 SSSLSVQD---------PEITSMKQLKVNDVVRGFVKRVADSGLFVALGHDVTAYVRVSD 1262

Query: 1286 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1345
            LSD Y++  +  F + +L+ GR+  V+P   R+++TLK S      ++ +  +++L VG 
Sbjct: 1263 LSDSYLKEWKDSFQVDQLIKGRITLVDPEQGRLQMTLKESALDPNYKAPVT-INDLKVGQ 1321

Query: 1346 IVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1404
            IV G++++VE +G FI ++ + N+ GLCH SE+++  V+N + +Y  G+ VK KI+K+D+
Sbjct: 1322 IVTGKVRKVEEFGAFIVVDRSANISGLCHRSEMADKRVENAKALYEEGDVVKAKIIKIDR 1381

Query: 1405 EKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1464
            ++ +IS  +K+S+F++D ++   S E++  + +   G  +      +S    ++ D +  
Sbjct: 1382 DQGKISFSLKASHFRDDDEDESGSDEDDVSQGVSLDGMEDVDFEGSDSDDDDEEGDDDES 1441

Query: 1465 DGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN--------QGHTDEAKTIDEKNN 1516
             GG  +    +         V +D+   +   G+ +         +   DEA   D ++ 
Sbjct: 1442 MGGVDLEDDSDDDEDDEDSNVEMDNAPSNRKGGLGEAGFDWSGNVRDEEDEAARSDSEDE 1501

Query: 1517 RHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD 1576
              +++K+K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +
Sbjct: 1502 DDSRRKKKKNRKPEIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLQYMAFQLELGE 1561

Query: 1577 VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1636
            +EKAR IAERAL+TI++ ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++
Sbjct: 1562 LEKAREIAERALRTISLGQDTEKLNIWVALLNLENTYGN--DDTLEEVFKRACQYNDTQE 1619

Query: 1637 VHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQR 1693
            ++  L  +Y ++ +N+ AD+L    + KK  ++ K +L     L       E  + ++ R
Sbjct: 1620 IYDRLTSIYIQSGKNEKADDLFRTALKKKISNTPKFFLNYASFLFDSMAAPERGRGLLPR 1679

Query: 1694 ALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1751
            AL SLP H H++  S+ A LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI+ 
Sbjct: 1680 ALQSLPSHTHVETTSKFAQLEFRSPNGDIERGRTVFEGLLSSFPKRIDLWNVLLDLEIKN 1739

Query: 1752 GDVDLIRGLFERAISL---------------SLPPKKMKFLFKKYLEYEKSV-----GEE 1791
            GD + +R LFER + +                L PK+ +F+FKK+L +E+ +     G  
Sbjct: 1740 GDAEQVRRLFERVLGIRDVRKGAAAPLDASKKLRPKQARFMFKKWLTFEEKLAADNGGNV 1799

Query: 1792 ERIEYVKQKAMEYVES 1807
            + +E +K KA +YV+S
Sbjct: 1800 KMVEEIKAKAADYVKS 1815



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 185/763 (24%), Positives = 337/763 (44%), Gaps = 66/763 (8%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA----NEDN-------- 56
           G  + G V+ +N  ++ + LP  L G   +  A+  +L+++IE     NE          
Sbjct: 157 GSMVLGQVSSINAHNIGLSLPNNLTGYV-SLTAISKVLEDKIEKILNDNEKEGSDAEDES 215

Query: 57  ------LLPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQE 107
                  L   F++GQ +   V+ +     D     K++I L++       GL+   ++ 
Sbjct: 216 DDEDSLDLKNYFYLGQYLRAYVVSVGSNSADAPSKNKKRIELTIDPRQTNTGLAKTDLEL 275

Query: 108 GMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDR 164
              + A V S+EDHG ++  G+   +  GF+    +  N+    +K G +   ++   + 
Sbjct: 276 NTAVQASVVSVEDHGLVMDLGIEGANVKGFMSSKEIDFNTKYSSIKEGSVFLCMITGQNA 335

Query: 165 TRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 222
              VV LS++  +              +I+  +PG      +  +  +G++   +     
Sbjct: 336 NGSVVKLSANLQSAGSIRKSHYLSTASTINSFLPGTAAEILLTDVSSSGLIGKIMGMLDA 395

Query: 223 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH----NRAP 276
           TVD+          +    +    K+  RI+   P+S    VG +L  ++L        P
Sbjct: 396 TVDLVQSGANSGKEDLAKKFQIGAKIKGRIVCTFPSSTPFKVGFSLLDHVLRFATEGHGP 455

Query: 277 PSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK-- 331
            +      +  I  ++KVV+VD GLG+ + I  T      +V +S +A+ +V  +     
Sbjct: 456 GTSEDAPAISAIVPEAKVVKVDPGLGVYVKIGDT--KKMGFVHVSRLADGKVENIAPDHG 513

Query: 332 -YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV-------IA 383
            ++  S    R++G+  L+ L     +    E       DV  G VVKGK+         
Sbjct: 514 PFRVDSVHEARVVGYSALDDLYLLSYERKVIEQPFLRLEDVTVGAVVKGKIEKLLIGPTG 573

Query: 384 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 441
           VD  G IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  ++++I +T K
Sbjct: 574 VD--GLIVALADGITGLVPSMHFADAALQFPEKKFREGMAITARILSVNLQNRQIRLTLK 631

Query: 442 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           K+L+ S+ AI   Y +      + G I  I+ HG  V+FY  V+GF P SE+      +P
Sbjct: 632 KSLLNSESAIWKDYEDIVPGAQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAFIKDP 691

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVT 556
           S  +  GQVV    +S  P+  ++ +S    P+  +E      + ++ G LV+G V   +
Sbjct: 692 SQHFRQGQVVNVHALSVDPSLGKLAVS-CKDPSTFTESYKKAFEKIQPGMLVTGTVFEKS 750

Query: 557 PNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 614
            + +++ +   G     +   H+ D  + + ++ + S I+ G + + LLVLD + +  L+
Sbjct: 751 ADDLLLKLDEFGLV-ARLDLAHVVDGSYPKQSSTL-SKIRVGQKLNDLLVLDIQRARRLI 808

Query: 615 --SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 670
             SA+ SL  +++Q  LP+    +   + V G+V NI   G FV FLG +TG  P+    
Sbjct: 809 KVSARASLKKASKQGSLPAKFEDVQEGTEVTGFVRNITADGLFVEFLGGITGLVPKRLLA 868

Query: 671 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
           +   +         Q V + +  V+++  R  LS+  S  +S 
Sbjct: 869 EESASKPDYGMVKSQIVTATVHSVDADFRRFILSMNPSELTSA 911



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 155/370 (41%), Gaps = 33/370 (8%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIF 62
            + +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +        F
Sbjct: 1047 EQVQTGSSWLGFINNIADDCLWVNLSPNVRGRLRFMDASDDLSLLADVEKH--------F 1098

Query: 63   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
             +G  +   V  +D +K         L L        LS   +  GMV+   V  + +  
Sbjct: 1099 PIGSALKVHVTAVDTEKGR-------LDLAAKQRSDKLSFSDITVGMVVPGRVTKVTEKQ 1151

Query: 123  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDT 177
             I+     S  G +   +L+++      P +     +L+  V  +D+  K + LS  P  
Sbjct: 1152 VIMQLS-DSIVGAVNLIDLSDDYS-KADPTVYNKNEVLRACVVGVDKANKKISLSLRPSK 1209

Query: 178  VSKCVT--KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
            V       +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L +++  
Sbjct: 1210 VLSSSLSVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVALGHDVTAYVRVSDLSDSY-L 1268

Query: 236  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKV 291
              WK+ +   + +  RI  VDP    + +TL    L  + +AP +   +KVG I    KV
Sbjct: 1269 KEWKDSFQVDQLIKGRITLVDPEQGRLQMTLKESALDPNYKAPVTINDLKVGQIV-TGKV 1327

Query: 292  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 351
             +V+     ++   S  +S   +   S++A++ V   +  Y+EG  V+ +I+     +G 
Sbjct: 1328 RKVEEFGAFIVVDRSANISGLCHR--SEMADKRVENAKALYEEGDVVKAKIIKIDRDQGK 1385

Query: 352  ATGILKASAF 361
             +  LKAS F
Sbjct: 1386 ISFSLKASHF 1395


>gi|281352084|gb|EFB27668.1| hypothetical protein PANDA_001797 [Ailuropoda melanoleuca]
          Length = 1874

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 393/1409 (27%), Positives = 647/1409 (45%), Gaps = 172/1409 (12%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GLRG  +  +  D      NE  A E+ L    
Sbjct: 77   ESLCEGMRILGCVKEVNEIELVISLPNGLRGFVQVTEICDAYTKKLNEQVAQEEPLKDLV 136

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  +   ++  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 137  SLPELFSPGMLVRCVVSSVGITER--GKKSVKLSLNPKNVNEVLSAEALKPGMLLTGTVS 194

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +     VV L
Sbjct: 195  SLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKGNGGVVGL 254

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL++FTG VD  HL  
Sbjct: 255  SVVHSEVSTAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLSFFTGLVDFMHLDP 314

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIY 286
                T + N     + V A +L V P +RAV L+L P  L       R    H+  G + 
Sbjct: 315  KKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRPVFLQPGRSLTRLSCQHL--GAVL 367

Query: 287  DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 346
            D+  V       G    +    +   AY  ++ +A+ +     + +K G+  + R++ + 
Sbjct: 368  DEVPVQNFFSKAGATFRLKDGAL---AYARLTHLADSKNVFNAEAFKPGNTHKCRVIDYS 424

Query: 347  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 406
             ++ LA   L+ S  E     + D+KPG +V+G V+ + S+G +V+    ++ L P  H+
Sbjct: 425  QMDELALLSLRTSVIEAQYLKYHDIKPGALVEGTVLTIKSYGMLVKVGEQIRGLIPPMHL 484

Query: 407  SEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            ++  +  P KK+++G E+  RVL    ++K++ +T KKTL++SKL  ++ YA+A   L T
Sbjct: 485  ADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAVTCYADAKPGLQT 544

Query: 465  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            HG+I +++  GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R
Sbjct: 545  HGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNCEPSKER 604

Query: 525  INLSFMM--KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            + LSF +   P +        E   V LG LV   V   T + + V V+        +PT
Sbjct: 605  MLLSFRLLGDPKKEHPGKSQKERRTVSLGQLVDVKVLEKTKDGLEVAVLPHNIP-AFLPT 663

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   + I
Sbjct: 664  PHLSDHVANGPLLYHWLRAGDTLHKVLCLSQSERHVLLCRKPALVSTVEGGQDPKSFAEI 723

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 724  HPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNV 783

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIG 750
            + E  R+ LSL+ S C   D +          LEE+  +     +  S L + +     G
Sbjct: 784  DEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 843

Query: 751  SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 807
             V++ +V E  + G  V+F E   V G +   + +  AG  VE G   +  IL+V   + 
Sbjct: 844  MVLDLEVQEVLEDG-SVAFSE-GPVPGLVLRASKYHRAGQEVEPGQKKKVVILNVDMLKL 901

Query: 808  LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 867
             V +SL    +        NR+A+K ++  E            AIV+ ++E++ V SL E
Sbjct: 902  EVHVSLCHDLV--------NRKAKKLRKGSE----------YQAIVQHLEESFAVASLVE 943

Query: 868  YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS 926
              H   ++  S  N T +F  ++   GQ V  T+       T    LL ++  +   T  
Sbjct: 944  SGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--FLLAVEGPAAKRTVR 1001

Query: 927  SKR-------------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 967
              R                   A KK +  +G +V   +  IKP  + +    G  G IH
Sbjct: 1002 QTRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIH 1061

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSI 1015
             + + DD   V  +  +  K+G+TVTAR+I      DMK   FL            ELSI
Sbjct: 1062 ASHILDD-VPVGTSPTAKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSI 1117

Query: 1016 KPSMLTVSEIGSKLLFEECDVSIGQRVTGYV-----------YKVDNEWALLTISRHLKA 1064
            +PS L   E   +       VS  +++  Y            Y V  +W  + I+  ++ 
Sbjct: 1118 RPSEL---EKDGRTALNTHSVSPLEKIKQYQAGQTLICFLKKYNVVKKWLEVEIAPDIRG 1174

Query: 1065 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1124
            ++ +L  +     L+   ++F IG+A+   V+  +  K  L L L             I 
Sbjct: 1175 RIPLLLMSLSFKVLKHPDKKFRIGQALKATVVGPDSSKAFLCLSL-------------IG 1221

Query: 1125 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1184
               ++    +G++  GR+ K+ +   GL V       GRV         VSD    Y E 
Sbjct: 1222 PHKLE----KGEVAMGRVMKV-TPKEGLTVSFPFGKIGRVSI-----FHVSD---SYSE- 1267

Query: 1185 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1244
               PL  +   + V+C VL ++  V     + LSLRS     S TN    S   D     
Sbjct: 1268 --TPLEDFVPQKVVRCYVLSVTGHV-----LTLSLRS-----SRTNPETKSKITDP---E 1312

Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------F 1298
            +  I+D+    +++GYVK V   G    L   +   V L+        SP K+       
Sbjct: 1313 INSIQDVQEGQLLRGYVKCVQPHGVLFGLGPSV---VGLARYPHVSQYSPSKKALYNRYL 1369

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            P GKL+  +VL +      VE++   SD+
Sbjct: 1370 PEGKLLTAKVLRLNRQKNLVELSFLPSDT 1398



 Score =  285 bits (730), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/330 (44%), Positives = 220/330 (66%), Gaps = 13/330 (3%)

Query: 1484 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE----KEEREQEIRAAEERLL 1539
            +V LD   P +       +G + +++  D+       KKE    K++ E+E+   EE L+
Sbjct: 1545 DVGLDSLTPALPP-----RGESSDSEDDDKPQQSTVSKKERMLEKQKAEKELSRIEEALM 1599

Query: 1540 EKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            +    P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE E
Sbjct: 1600 DPGRQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQE 1659

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL 
Sbjct: 1660 KLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELY 1717

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
             +M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ 
Sbjct: 1718 NRMLKRFRQEKAVWIKYGAFLLRRAQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQL 1777

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1777
            G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF 
Sbjct: 1778 GDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFF 1837

Query: 1778 FKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1838 FKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1867



 Score = 72.4 bits (176), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 150/332 (45%), Gaps = 51/332 (15%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
            +AV   VL ++   + +RL LRP   Q G S     +S  ++   + E  +         
Sbjct: 324  QAVRACVLCVHPRTRAVRLSLRPVFLQPGRS--LTRLSCQHLGAVLDEVPV-----QNFF 376

Query: 1147 SGVGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1204
            S  G    ++ G   Y R+ H  + KN+        ++   F P      G   KC+V++
Sbjct: 377  SKAGATFRLKDGALAYARLTHLADSKNV--------FNAEAFKP------GNTHKCRVID 422

Query: 1205 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1264
             S+         LSLR+S+                   ++L K  D+ P  +V+G V  +
Sbjct: 423  YSQMDELAL---LSLRTSV----------------IEAQYL-KYHDIKPGALVEGTVLTI 462

Query: 1265 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
             S G  + +  ++   +   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK 
Sbjct: 463  KSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKK 522

Query: 1325 S--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            +  +S+  +   +   ++   G    G I RV+  G  +   N ++ GL    ELS ++V
Sbjct: 523  TLIESKLPA---VTCYADAKPGLQTHGFILRVKDCGCIVKFYN-DVQGLVPKHELSAEYV 578

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             + E ++ AG+ VKV +L  +  K R+ L  +
Sbjct: 579  PDPERVFYAGQVVKVVVLNCEPSKERMLLSFR 610



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             + + +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 718  KSFAEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 776

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
              K+  VD+EK+R+ L ++ S
Sbjct: 777  VAKVTNVDEEKQRMLLSLRLS 797


>gi|347837370|emb|CCD51942.1| hypothetical protein [Botryotinia fuckeliana]
          Length = 1792

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 408/1513 (26%), Positives = 702/1513 (46%), Gaps = 167/1513 (11%)

Query: 373  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS------EFEIVKPGKKFKVGAELVF 426
            PG  V+  ++ V S G   +  G V     L H        E E     KKFK+GA++  
Sbjct: 360  PGTAVETLIVDVSSRGLTGKVMGMVDVTADLMHSGTSVMNQELE-----KKFKIGAKVRG 414

Query: 427  RVLGV----KSKRITVT---HKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKH 474
            RV+        +++ ++   H  +L + +     +     D L     +    I K+E  
Sbjct: 415  RVICTFPNSDPQKLGISLLDHVTSLTQQQAGKPGNKVNPLDTLPLSTIVEEVTIKKVESG 474

Query: 475  -GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL 527
             G FV     G+ GF   S +    ++   E +  Y VG V + R++  +S+     I+L
Sbjct: 475  VGLFVDVGIKGIPGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVLGYNSLDGVYLISL 534

Query: 528  --SFMMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD 581
              S + +P    ED  +K+G +V G V+  +V    V  ++  +A+  S G +P  HLAD
Sbjct: 535  EKSVLEQPYLRIED--LKIGEVVKGKVEKLIVNDKGVGGLLVNLAENIS-GLVPETHLAD 591

Query: 582  -HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 639
              L H    +   K G     ++L  D     + L+ K +L+NS          I     
Sbjct: 592  IQLLHP---EKKFKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSESPALVSYDDITVGMQ 648

Query: 640  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
              G + NI+ TG  V+F G + GF P S+  +    D ++ + +GQ V  ++L V+ E  
Sbjct: 649  SPGTIVNILNTGAVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIGQVVNVHVLKVDPEAK 708

Query: 700  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 759
            ++T+S K             ++  + E ++ L   K N      ++G  + +++      
Sbjct: 709  KLTVSCKDPSVFGLAQQNALKNLKIGEIVSALVIEKSNDDISVEIQGLGLKAILP----- 763

Query: 760  SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFI 818
                G +    E+     F          +  G V+   A+LD  + +RL+ L+ K   +
Sbjct: 764  ---VGHLTDGSENKSRSSF--------KNIRVGQVLSDLAVLDKLEPKRLIVLTNKPALV 812

Query: 819  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS-------------L 865
                     + AQ K   R    D+   +TV+  V+ +    + +              +
Sbjct: 813  ---------KAAQNKTLLR-MFDDVKEKKTVHGFVKNITLTAVFVQFGGGLTGLLPKNKI 862

Query: 866  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 925
            PE N  +       Y T +       +GQ      MA  +S       L   A  E    
Sbjct: 863  PEKNLRLPDFGFKKYQTIEVKVLTIDHGQRRFLLSMADATSDKKSNEPLAPGANQEAVNP 922

Query: 926  SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLF 983
              +  K      +G L +A ++ +K  ++ ++      GRI +++  D  S++   +   
Sbjct: 923  IDETIKSIEDITLGRLTKARVSSVKDTQVNVQLADNIQGRIDVSQAFDSWSDIKSKKQPL 982

Query: 984  SNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEEC 1034
              F   Q V  R++   +  + +         K+ ++ELS KPS  T S      L +  
Sbjct: 983  KTFSPKQIVDVRVLGIHDARNHRFLPISHRSGKTLVFELSAKPSDQTESAQDPVSLDK-- 1040

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
             + +G     +V  V  +   + IS +++ ++  LD + + S L++    F IG A+  H
Sbjct: 1041 -IKVGSSWLAFVNNVGVDCLWVNISPNVRGRISALDVSDDVSLLKDLAANFPIGSAIRVH 1099

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGL 1152
            V  ++ E   L L  R  QD               TF  + +G IV G+++++      +
Sbjct: 1100 VKGVDVETNRLDLSARSSQDS-----------EALTFDKLSQGMIVPGKVTRV--NERQV 1146

Query: 1153 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1212
            +VQ+   +   ++ T+L +          D  + DP S Y +   V+  V +I    +  
Sbjct: 1147 MVQLTDSISAPINLTDLCD----------DYSEADP-SKYSKNDIVRVCVTDIDVPNK-- 1193

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
              V LS R+S    SS    D           +  I  L  N IV+G+VK+V  KG F+ 
Sbjct: 1194 -RVRLSTRASRVMNSSAAVQD---------PEISSISQLKVNDIVRGFVKHVADKGLFVN 1243

Query: 1273 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTA 1330
            L   + A V +S+LSD Y++  + EF + +LV G+V  V+ +   V+++LK S  D    
Sbjct: 1244 LGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLSLKPSVIDKDYV 1303

Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1389
            +    N++    V  +V G+I++VE +G+FI ++ + N+ GLCH SE++E  V +++ +Y
Sbjct: 1304 APLTFNDI---QVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLY 1360

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1449
              G+ VK  +LK+D EK+RIS  MK+S+F+ D +     S+++  + ++           
Sbjct: 1361 SEGDAVKAIVLKMDTEKKRISFSMKASHFE-DGNESDDESDDDGVDGVKLDSMDIDDDDD 1419

Query: 1450 ENSSVA-------VQDMDMESEDGGSLVLAQIE---SRASVPPLEVNLDDEQPDMDNGIS 1499
            ++           VQD++  +EDG     +  E   +   VP L     D   D+   + 
Sbjct: 1420 DDDDSEGGIDLDDVQDLESAAEDGDEASDSDEEMPDAEGDVPALSAGGFDWSADL---LD 1476

Query: 1500 QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1559
            Q  G ++    +D  +    +K +K++R+ EI+      L+ + P++  +FERL+   P+
Sbjct: 1477 QADGQSN----VDSDDEGTEEKPKKKKRKAEIKVDRTGDLDANGPQSISDFERLLLGQPD 1532

Query: 1560 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619
            SS +W +YMAF + ++++ KAR IAERA++TIN+REE EKLNIW+A  NLE  YG+  +E
Sbjct: 1533 SSSLWTQYMAFQMQLSELGKAREIAERAIKTINMREETEKLNIWLALLNLEIAYGS--DE 1590

Query: 1620 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1679
             V  VF+RA QY D ++VH  L  +Y ++ +NK ADEL   + KKF  S  VW+     L
Sbjct: 1591 TVEAVFKRACQYNDAQEVHERLASIYIQSGKNKKADELFQALTKKFSQSPTVWVNYAHFL 1650

Query: 1680 LKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYP 1735
                   +  +A++ RA  SLP H H+    + A LEF++  G  +RGR++FEG+L+++ 
Sbjct: 1651 FNTLGAPDRGRALLPRATQSLPPHTHLPLTLKFAALEFRSEHGSPERGRTIFEGVLAKWS 1710

Query: 1736 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERI 1794
            KR D+W   LD EI+ GD  ++RG+FER   +  L PK     FK++ E+E++ G+++  
Sbjct: 1711 KRLDIWGQLLDLEIKAGDKSIVRGVFERVARIKGLKPKGAMGWFKRWTEWEEANGDKKSQ 1770

Query: 1795 EYVKQKAMEYVES 1807
            E V+  A E+V +
Sbjct: 1771 EKVRAIAEEWVRN 1783



 Score =  208 bits (530), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 195/717 (27%), Positives = 321/717 (44%), Gaps = 61/717 (8%)

Query: 8   AGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL---------- 57
           +G  + G V+++N  D+ + LP  L G        D + +                    
Sbjct: 150 SGSLVLGQVSQINATDIALSLPNNLTGYVPITAISDKVTERVEAIAAAEEDDADDEVEVE 209

Query: 58  ---LPTIFHVGQLVSCIVLQLDDDKKEI----GKRKIWLSLRLSLLYKGLSLETVQEGMV 110
              L  IF +GQ +   V+   DD        GKR+I LSLR      G++ + +     
Sbjct: 210 DIDLKKIFSLGQYLRAYVVSTSDDTNTATLGKGKRRIELSLRPQHANNGVTPQNLINNTT 269

Query: 111 LTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLA-ENSGIDVKPGLLLQGVVRSIDRTRK 167
           L A V S+EDHG I++ GL      GF+   ++  E    DV+ G +   +V  +    K
Sbjct: 270 LMASVTSVEDHGLIMNIGLEDTGIRGFMGAKDIGYEVVLADVQEGAVFLCMVTGLSSNGK 329

Query: 168 VVYLSSDPDTVSKCVTKD--LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
            V L +D   +      +      ++D  +PG  V T +  +   G+    +     T D
Sbjct: 330 TVKLCADTQKIGNVKKSNYLTDAPTVDAFLPGTAVETLIVDVSSRGLTGKVMGMVDVTAD 389

Query: 226 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPY---LLHNRA----- 275
           + H   +      +  +    KV  R++   P S  + +G++L  +   L   +A     
Sbjct: 390 LMHSGTSVMNQELEKKFKIGAKVRGRVICTFPNSDPQKLGISLLDHVTSLTQQQAGKPGN 449

Query: 276 ---PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 331
              P   + +  I ++  + +V+ G+GL +D+    +  P +V IS V + ++  LE+  
Sbjct: 450 KVNPLDTLPLSTIVEEVTIKKVESGVGLFVDVGIKGI--PGFVHISRVKDGKIETLEETT 507

Query: 332 --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV---IAVDS 386
             YK GS  R R+LG+  L+G+    L+ S  E       D+K G VVKGKV   I  D 
Sbjct: 508 GPYKVGSVHRGRVLGYNSLDGVYLISLEKSVLEQPYLRIEDLKIGEVVKGKVEKLIVNDK 567

Query: 387 --FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKK 442
              G +V     +  L P  H+++ +++ P KKFK G  +  RVL      ++I +T KK
Sbjct: 568 GVGGLLVNLAENISGLVPETHLADIQLLHPEKKFKEGMAVTARVLSTDPGKRQIRLTLKK 627

Query: 443 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
           TLV S+   L SY + T  + + G I  I   G  V+FY  V+GF P SE+      +P+
Sbjct: 628 TLVNSESPALVSYDDITVGMQSPGTIVNILNTGAVVQFYGNVRGFLPVSEMSEAYIQDPN 687

Query: 503 SMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVT 556
             + +GQVV   ++   P ++++ +S      F +      ++  +K+G +VS +V   +
Sbjct: 688 QHFKIGQVVNVHVLKVDPEAKKLTVSCKDPSVFGLAQQNALKN--LKIGEIVSALVIEKS 745

Query: 557 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDN-ESSNLL- 613
            + + V +   G  K  +P  HL D  E+ +      I+ G     L VLD  E   L+ 
Sbjct: 746 NDDISVEIQGLGL-KAILPVGHLTDGSENKSRSSFKNIRVGQVLSDLAVLDKLEPKRLIV 804

Query: 614 LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
           L+ K +L+ +AQ   L      +     VHG+V NI  T  FV+F G LTG  P++K
Sbjct: 805 LTNKPALVKAAQNKTLLRMFDDVKEKKTVHGFVKNITLTAVFVQFGGGLTGLLPKNK 861



 Score = 45.4 bits (106), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 22/277 (7%)

Query: 183  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 242
            ++D + ++ D L  GM+V  +V  + E  VM+      +  +++  L + +   +  + Y
Sbjct: 1117 SQDSEALTFDKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEAD-PSKY 1175

Query: 243  NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVR 293
            +++  V   +  +D  ++ V L+     + N +           S +KV DI        
Sbjct: 1176 SKNDIVRVCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHV 1235

Query: 294  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 353
             D+GL + L    T     AYV ISD+++  ++  + +++    V+ ++     +     
Sbjct: 1236 ADKGLFVNLGGNVT-----AYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQ 1290

Query: 354  GILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSE 408
              LK S  +       T +D++   VV GK+  V+ FG  +   G   V  LC    M+E
Sbjct: 1291 LSLKPSVIDKDYVAPLTFNDIQVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAE 1350

Query: 409  FEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 443
              +    K +  G  +   VL + +  KRI+ + K +
Sbjct: 1351 KRVHDVKKLYSEGDAVKAIVLKMDTEKKRISFSMKAS 1387



 Score = 43.9 bits (102), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 102/490 (20%), Positives = 189/490 (38%), Gaps = 64/490 (13%)

Query: 102  LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS----GIDVKPGLLLQG 157
             + V+E   +  +VK+I      + FG    TG LP+N + E +        K    ++ 
Sbjct: 824  FDDVKEKKTVHGFVKNITLTAVFVQFG-GGLTGLLPKNKIPEKNLRLPDFGFKKYQTIEV 882

Query: 158  VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG--------------ISIDLLVPGMMVSTR 203
             V +ID  ++   LS    T  K   + L                 SI+ +  G +   R
Sbjct: 883  KVLTIDHGQRRFLLSMADATSDKKSNEPLAPGANQEAVNPIDETIKSIEDITLGRLTKAR 942

Query: 204  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND----YNQHKKVNARILFVD--- 256
            V S+ +  V +       G +D+    +++     K      ++  + V+ R+L +    
Sbjct: 943  VSSVKDTQVNVQLADNIQGRIDVSQAFDSWSDIKSKKQPLKTFSPKQIVDVRVLGIHDAR 1002

Query: 257  -----PTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 311
                 P S   G TL   +    A PS  +     D   + ++  G   L  + +  V  
Sbjct: 1003 NHRFLPISHRSGKTL---VFELSAKPSD-QTESAQDPVSLDKIKVGSSWLAFVNNVGVDC 1058

Query: 312  PAYVTIS----------DVAEEE--VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 359
              +V IS          DV+++   ++ L   +  GS +RV + G   +E     +   S
Sbjct: 1059 -LWVNISPNVRGRISALDVSDDVSLLKDLAANFPIGSAIRVHVKGV-DVETNRLDLSARS 1116

Query: 360  AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVKPGKKF 418
            + +    T   +  GM+V GKV  V+    +VQ    + A   L  +  ++    P K  
Sbjct: 1117 SQDSEALTFDKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEADPSKYS 1176

Query: 419  KVGAELVFRV----LGVKSKRITVTHKKTLVKSKLAI-----LSSYAEATDRLITHGWIT 469
            K     + RV    + V +KR+ ++ + + V +  A      +SS ++     I  G++ 
Sbjct: 1177 K---NDIVRVCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVK 1233

Query: 470  KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             +   G FV     V  +   S+L      +  S + V Q+VK ++         + LS 
Sbjct: 1234 HVADKGLFVNLGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLS- 1292

Query: 530  MMKPTRVSED 539
             +KP+ + +D
Sbjct: 1293 -LKPSVIDKD 1301


>gi|156845672|ref|XP_001645726.1| hypothetical protein Kpol_1043p58 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156116393|gb|EDO17868.1| hypothetical protein Kpol_1043p58 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1725

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 361/1206 (29%), Positives = 587/1206 (48%), Gaps = 162/1206 (13%)

Query: 651  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710
            GC V F G ++GF P ++  +       +   +GQ++   +L V  E  RI ++    C 
Sbjct: 625  GCVVSFFGGISGFLPNTEISEAFVKRPEEHLRLGQTILVKLLQVEKERSRIIVT----CK 680

Query: 711  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 768
             S D +  Q+     E I  L   K       +VE  +I    +  V E    G+  VV 
Sbjct: 681  VSNDKADSQK-----ETIEKLIPGKS------FVEASVIEKTKDSLVVEMEKTGLRGVVY 729

Query: 769  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 828
                SD+   I  ++     V  GS +   ++D      + +++LK   I   ++A   +
Sbjct: 730  VGHLSDLR--IEQNRAEIKKVRIGSKLNGLVIDKDTRTYIFNMTLKESLI---KDAKEGK 784

Query: 829  QAQKKKRKREASKDLGVHQTVNAIVE---IVKEN--YLVLSLPEY---NHSIGYASVSDY 880
                    +   K   +H  V ++ +    V  N  ++ L LP Y   N  I +      
Sbjct: 785  LPTSYSEVKTLDKSTPLHGYVKSVSDKGIFVAFNGKFVGLVLPSYAVENREIDF------ 838

Query: 881  NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS-------ETETSS----SKR 929
                  +K F   QSV A +  L +     R LL LK           T+T++       
Sbjct: 839  ------KKSFYMNQSVTAYI--LRTDDEQERFLLTLKEPKTKEKKKTSTDTAAINPIDSS 890

Query: 930  AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFK 987
             K  S + VGS+V+ +I  +K  +L +      HGR+ I EV D+ +++ +     SNFK
Sbjct: 891  IKDLSDFRVGSIVEGKIKGVKKNQLNIILADNLHGRVDIAEVFDNFADIKDKQQPLSNFK 950

Query: 988  IGQTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1037
             G  +  +I+     KS K       ++K S L ELSIKPS L  S+I    + E   V 
Sbjct: 951  SGDLIKVKILGHHDVKSYKFLPISHSNLKNSVL-ELSIKPSELKSSKINIPSIDE---VK 1006

Query: 1038 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1097
            I   +TG++     +   LT+S  LKA+L + + + + S     +  F +G A+  HV S
Sbjct: 1007 IDSELTGFINNFAKDCVWLTVSPILKAKLPLFELSDDGSRFSAIEDSFPLGTALRVHVTS 1066

Query: 1098 INKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1156
            ++K    + +  R      I D  VD             DI+  RI K+      +++ +
Sbjct: 1067 VDKTHNFVTVSNRSKSVKSIDDVNVD-------------DILPARIIKVNDNY--VLLDL 1111

Query: 1157 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE--GQFVKCKVLEISRTVRGTFH 1214
            G  + G + F       ++D L+ +     D    YD+   + V  KV+ I R  +    
Sbjct: 1112 GHKITG-ISF-------ITDALNDFSSSLHDE---YDDKLNEMVSAKVISIDRETK---K 1157

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            + LSL++         +S++          L+  EDL    +V+  +KNVT KG F+ LS
Sbjct: 1158 INLSLQNE-------KASNM---------KLKSHEDLKQKDVVKAIIKNVTEKGIFVYLS 1201

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              L+A V +S LSD Y++  +K +   + V G+V+S +  S  + +TL+ S+        
Sbjct: 1202 SALEAFVPVSKLSDSYLKDWKKFYKPMQSVIGKVISCDDNS-HILLTLRESEV-NGELKV 1259

Query: 1335 INNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGE 1393
            +   S++ VGDI  G IK V  +G+F+ ++NT N+ GL H +E+++   +N+ +I+  G+
Sbjct: 1260 LKGYSDIKVGDIFNGNIKNVTDFGVFVKLDNTVNVSGLAHRTEIADTVPENLSSIFGVGD 1319

Query: 1394 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSS 1453
            +VK  +LK + EK++ISLG+K+SYF +        S+ ESDE  +EV             
Sbjct: 1320 RVKAIVLKTNPEKQQISLGLKASYFTSAKSKENSDSDLESDE--DEV------------- 1364

Query: 1454 VAVQDMDMESEDGGSLVLAQIESRASVPP-------LEVNLDDEQPDMDNGISQNQGHTD 1506
              + D++   E      +   E ++S  P       L    D     ++   S +    +
Sbjct: 1365 --MADVNYNEESEDEAEIDDEEPKSSKTPMTTDGLSLSAGFDWTANILNQAQSDDDLEDE 1422

Query: 1507 EAKTIDEKNNRHAKKKEK--EEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1564
                 + K ++H + K K  E++  +I A         AP +  +FERL+  +PNSS +W
Sbjct: 1423 MEDFTEVKRSKHKRSKTKIIEDKTIDINAR--------APESVSDFERLIVGNPNSSVIW 1474

Query: 1565 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1624
            + YMAF L +++++KAR IAERAL+TIN REENEKLNIW+A  NLEN +G   EE +  V
Sbjct: 1475 MNYMAFRLQLSEIDKAREIAERALKTINFREENEKLNIWIAMLNLENTFGT--EETLEDV 1532

Query: 1625 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLL--K 1681
            F+R+ QY D   +H  LL +Y+ +E+   A EL     KKF      VW+   + L+  K
Sbjct: 1533 FKRSCQYMDSFTMHNKLLSIYQMSEKLDKAAELFKATSKKFGSEKVSVWVSWGEFLINNK 1592

Query: 1682 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1741
            Q QE  ++V+  AL SLP+  H++ + + A LEF  G  +RGRS+FEG++++ PKR D+W
Sbjct: 1593 QAQEA-RSVLASALKSLPKRNHVELVRKFAQLEFAKGDPERGRSLFEGLIADAPKRIDIW 1651

Query: 1742 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1801
            ++Y+DQEI++G+      LFER I+  +  K+ KF F K+L++E+S  +E+ + YVK KA
Sbjct: 1652 NVYIDQEIKIGEKKKAEDLFERVINRKITRKQAKFFFNKWLQFEESQNDEKTVSYVKAKA 1711

Query: 1802 MEYVES 1807
             E+ E+
Sbjct: 1712 TEFAEN 1717



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 293/1243 (23%), Positives = 524/1243 (42%), Gaps = 150/1243 (12%)

Query: 58   LPTIFHVGQLVSCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 114
            L   F +GQ + C V     L+   K+  K+KI LS+  S++   L+ E + +   +   
Sbjct: 209  LRNYFKIGQWLRCSVSANTALETQSKKNKKKKILLSIEPSVV-NILTEEDLNKSTTVQCS 267

Query: 115  VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 174
            VKSIEDHG  L  G+   TGF+ + +       ++KPG +  G +        VV L+  
Sbjct: 268  VKSIEDHGAALDLGIEGITGFISKKDYLNFD--ELKPGFVFLGNIAKKSGRSVVVNLNFS 325

Query: 175  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 234
            P      ++      SID ++PG  V    +S+   G+         G +   HL  TF 
Sbjct: 326  PKNKVSQIS------SIDAVIPGQSVDLLCESVQPTGITGKVYGLVPGFISNVHLH-TFD 378

Query: 235  TTNWKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYL------LHNRAPPSHVKVGDI 285
                K+ Y     V  RIL         + + ++  P++      LH          G  
Sbjct: 379  REEIKHKYAIGSNVQGRILASLNNKNGDKVLIISTLPHITSLENKLHEIENLEAFPFGYT 438

Query: 286  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 345
            +D + +   D    L L +    +    +  I +  E E             +  R+LG+
Sbjct: 439  FDSASIKGRDSEY-LYLALDEDRIGEVHHSKIGNAFESE------------KISARVLGY 485

Query: 346  RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPL 403
              ++ +          +      +D+K G ++ G ++++V S G  ++ F     A  P 
Sbjct: 486  NSIDNVFQLSTDPETLKLKYVRAADIKIGELLTGCEIVSVSSKGIQLKIFNNQFSAFVPP 545

Query: 404  PHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV---KSKLAILSSYAEAT 459
             H+S+  +V P +KFK+G+++  RVL V  +  I VT KKTLV   +++  +L SY  A 
Sbjct: 546  IHISDTRLVYPERKFKIGSKIKGRVLSVDFRGHILVTLKKTLVNAEENETPLLDSYKAAQ 605

Query: 460  ----DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 515
                    T   +   + +GC V F+ G+ GF P +E+       P     +GQ +  ++
Sbjct: 606  TIKDSNSKTTATVQYFKPNGCVVSFFGGISGFLPNTEISEAFVKRPEEHLRLGQTILVKL 665

Query: 516  MSSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 570
            +       RI ++  +   +        + L+   S V   V   T +++VV +   G  
Sbjct: 666  LQVEKERSRIIVTCKVSNDKADSQKETIEKLIPGKSFVEASVIEKTKDSLVVEMEKTGL- 724

Query: 571  KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ- 626
            +G +   HL+D  +E        ++ G + +  LV+D ++   +  ++ K SLI  A++ 
Sbjct: 725  RGVVYVGHLSDLRIEQNRAEIKKVRIGSKLNG-LVIDKDTRTYIFNMTLKESLIKDAKEG 783

Query: 627  -LPSDASHIHP---NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 682
             LP+  S +     ++ +HGYV ++ + G FV F G+  G    S AV+ +  D  K++Y
Sbjct: 784  KLPTSYSEVKTLDKSTPLHGYVKSVSDKGIFVAFNGKFVGLVLPSYAVENREIDFKKSFY 843

Query: 683  VGQSVRSNILDVNSETGRITLSL-----KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
            + QSV + IL  + E  R  L+L     K+   +STD +           I  + SS   
Sbjct: 844  MNQSVTAYILRTDDEQERFLLTLKEPKTKEKKKTSTDTA----------AINPIDSS--- 890

Query: 738  GSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGA 787
               +K +  F +GS++EGK+   + N   ++++   H         D +  I   Q   +
Sbjct: 891  ---IKDLSDFRVGSIVEGKIKGVKKNQLNIILADNLHGRVDIAEVFDNFADIKDKQQPLS 947

Query: 788  TVESGSVIQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 844
              +SG +I+  IL   DV         S K + I      NS  +   K  + ++SK   
Sbjct: 948  NFKSGDLIKVKILGHHDVK--------SYKFLPISHSNLKNSVLELSIKPSELKSSK--- 996

Query: 845  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP 904
                + +I E+  ++ L   +  +     + +VS     K P  +  +  S  + +    
Sbjct: 997  --INIPSIDEVKIDSELTGFINNFAKDCVWLTVSPILKAKLPLFELSDDGSRFSAIEDSF 1054

Query: 905  SSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGSLVQAEITEIKPLELRLKFGIG 961
               TA R+ +     +    + S R+K   S D   V  ++ A I ++    + L  G  
Sbjct: 1055 PLGTALRVHVTSVDKTHNFVTVSNRSKSVKSIDDVNVDDILPARIIKVNDNYVLLDLGHK 1114

Query: 962  FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1021
              G   IT+  +D S+ + + + + K+ + V+A++I  S   + KK     LS++    +
Sbjct: 1115 ITGISFITDALNDFSSSLHDEYDD-KLNEMVSAKVI--SIDRETKK---INLSLQNEKAS 1168

Query: 1022 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1081
              ++ S    ++ DV     V   +  V  +   + +S  L+A  F+  S    S L+++
Sbjct: 1169 NMKLKSHEDLKQKDV-----VKAIIKNVTEKGIFVYLSSALEA--FVPVSKLSDSYLKDW 1221

Query: 1082 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1141
            ++ +   ++V G V+S +    +L L LR  +     K +   +D     I  GDI  G 
Sbjct: 1222 KKFYKPMQSVIGKVISCDDNSHIL-LTLRESEVNGELKVLKGYSD-----IKVGDIFNGN 1275

Query: 1142 ISKILSGVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1199
            I  +     G+ V++    ++ G  H TE+ +  V + LS          S +  G  VK
Sbjct: 1276 IKNVTD--FGVFVKLDNTVNVSGLAHRTEIAD-TVPENLS----------SIFGVGDRVK 1322

Query: 1200 CKVLEISRTVRGTFHVELSLRSSL--DGMSSTNS-SDLSTDVD 1239
              VL   +T      + L L++S      S  NS SDL +D D
Sbjct: 1323 AIVL---KTNPEKQQISLGLKASYFTSAKSKENSDSDLESDED 1362


>gi|301756220|ref|XP_002913967.1| PREDICTED: protein RRP5 homolog [Ailuropoda melanoleuca]
          Length = 1907

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 392/1409 (27%), Positives = 647/1409 (45%), Gaps = 172/1409 (12%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GLRG  +  +  D      NE  A E+ L    
Sbjct: 109  ESLCEGMRILGCVKEVNEIELVISLPNGLRGFVQVTEICDAYTKKLNEQVAQEEPLKDLV 168

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  +   ++  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 169  SLPELFSPGMLVRCVVSSVGITER--GKKSVKLSLNPKNVNEVLSAEALKPGMLLTGTVS 226

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +     VV L
Sbjct: 227  SLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKGNGGVVGL 286

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL++FTG VD  HL  
Sbjct: 287  SVVHSEVSTAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLSFFTGLVDFMHLDP 346

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIY 286
                T + N     + V A +L V P +RAV L+L P  L       R    H+  G + 
Sbjct: 347  KKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRPVFLQPGRSLTRLSCQHL--GAVL 399

Query: 287  DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 346
            D+  V       G    +    +   AY  ++ +A+ +     + +K G+  + R++ + 
Sbjct: 400  DEVPVQNFFSKAGATFRLKDGAL---AYARLTHLADSKNVFNAEAFKPGNTHKCRVIDYS 456

Query: 347  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 406
             ++ LA   L+ S  E     + D+KPG +V+G V+ + S+G +V+    ++ L P  H+
Sbjct: 457  QMDELALLSLRTSVIEAQYLKYHDIKPGALVEGTVLTIKSYGMLVKVGEQIRGLIPPMHL 516

Query: 407  SEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            ++  +  P KK+++G E+  RVL    ++K++ +T KKTL++SKL  ++ YA+A   L T
Sbjct: 517  ADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAVTCYADAKPGLQT 576

Query: 465  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            HG+I +++  GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R
Sbjct: 577  HGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNCEPSKER 636

Query: 525  INLSFMM--KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            + LSF +   P +        E   V LG LV   V   T + + V V+        +PT
Sbjct: 637  MLLSFRLLGDPKKEHPGKSQKERRTVSLGQLVDVKVLEKTKDGLEVAVLPHNIP-AFLPT 695

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   + I
Sbjct: 696  PHLSDHVANGPLLYHWLRAGDTLHKVLCLSQSERHVLLCRKPALVSTVEGGQDPKSFAEI 755

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 756  HPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNV 815

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQ-SSKHNGSELKWVEGFIIG 750
            + E  R+ LSL+ S C   D +          LEE+  +    S  +   ++ +     G
Sbjct: 816  DEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG 875

Query: 751  SVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAER 807
             V++ +V E  + G  V+F E   V G +   + +  AG  VE G   +  IL+V   + 
Sbjct: 876  MVLDLEVQEVLEDG-SVAFSE-GPVPGLVLRASKYHRAGQEVEPGQKKKVVILNVDMLKL 933

Query: 808  LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 867
             V +SL    +        NR+A+K ++  E            AIV+ ++E++ V SL E
Sbjct: 934  EVHVSLCHDLV--------NRKAKKLRKGSE----------YQAIVQHLEESFAVASLVE 975

Query: 868  YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS 926
              H   ++  S  N T +F  ++   GQ V  T+       T    LL ++  +   T  
Sbjct: 976  SGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--FLLAVEGPAAKRTVR 1033

Query: 927  SKR-------------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 967
              R                   A KK +  +G +V   +  IKP  + +    G  G IH
Sbjct: 1034 QTRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIH 1093

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSI 1015
             + + DD   V  +  +  K+G+TVTAR+I      DMK   FL            ELSI
Sbjct: 1094 ASHILDD-VPVGTSPTAKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSI 1149

Query: 1016 KPSMLTVSEIGSKLLFEECDVSIGQRVTGYV-----------YKVDNEWALLTISRHLKA 1064
            +PS L   E   +       VS  +++  Y            Y V  +W  + I+  ++ 
Sbjct: 1150 RPSEL---EKDGRTALNTHSVSPLEKIKQYQAGQTLICFLKKYNVVKKWLEVEIAPDIRG 1206

Query: 1065 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1124
            ++ +L  +     L+   ++F IG+A+   V+  +  K  L L L             I 
Sbjct: 1207 RIPLLLMSLSFKVLKHPDKKFRIGQALKATVVGPDSSKAFLCLSL-------------IG 1253

Query: 1125 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1184
               ++    +G++  GR+ K+ +   GL V       GRV         VSD    Y E 
Sbjct: 1254 PHKLE----KGEVAMGRVMKV-TPKEGLTVSFPFGKIGRVSI-----FHVSD---SYSE- 1299

Query: 1185 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1244
               PL  +   + V+C VL ++  V     + LSLRS     S TN    S   D     
Sbjct: 1300 --TPLEDFVPQKVVRCYVLSVTGHV-----LTLSLRS-----SRTNPETKSKITDP---E 1344

Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------F 1298
            +  I+D+    +++GYVK V   G    L   +   V L+        SP K+       
Sbjct: 1345 INSIQDVQEGQLLRGYVKCVQPHGVLFGLGPSV---VGLARYPHVSQYSPSKKALYNRYL 1401

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            P GKL+  +VL +      VE++   SD+
Sbjct: 1402 PEGKLLTAKVLRLNRQKNLVELSFLPSDT 1430



 Score =  288 bits (737), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/326 (44%), Positives = 217/326 (66%), Gaps = 4/326 (1%)

Query: 1484 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD- 1542
            +V LD   P +      +    D+      K ++  +  EK++ E+E+   EE L++   
Sbjct: 1577 DVGLDSLTPALPPRGESSDSEDDDKPQQSTKKSKKERMLEKQKAEKELSRIEEALMDPGR 1636

Query: 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1602
             P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+
Sbjct: 1637 QPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNV 1696

Query: 1603 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1662
            WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+
Sbjct: 1697 WVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRML 1754

Query: 1663 KKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+
Sbjct: 1755 KRFRQEKAVWIKYGAFLLRRAQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDAE 1814

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+Y
Sbjct: 1815 RAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRY 1874

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVES 1807
            L+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1875 LDYEKQHGTEKDVQAVKAKALEYVEA 1900



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 150/332 (45%), Gaps = 51/332 (15%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
            +AV   VL ++   + +RL LRP   Q G S     +S  ++   + E  +         
Sbjct: 356  QAVRACVLCVHPRTRAVRLSLRPVFLQPGRS--LTRLSCQHLGAVLDEVPV-----QNFF 408

Query: 1147 SGVGG-LVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1204
            S  G    ++ G   Y R+ H  + KN+        ++   F P      G   KC+V++
Sbjct: 409  SKAGATFRLKDGALAYARLTHLADSKNV--------FNAEAFKP------GNTHKCRVID 454

Query: 1205 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1264
             S+         LSLR+S+                   ++L K  D+ P  +V+G V  +
Sbjct: 455  YSQMDELAL---LSLRTSV----------------IEAQYL-KYHDIKPGALVEGTVLTI 494

Query: 1265 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
             S G  + +  ++   +   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK 
Sbjct: 495  KSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKK 554

Query: 1325 S--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            +  +S+  +   +   ++   G    G I RV+  G  +   N ++ GL    ELS ++V
Sbjct: 555  TLIESKLPA---VTCYADAKPGLQTHGFILRVKDCGCIVKFYN-DVQGLVPKHELSAEYV 610

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             + E ++ AG+ VKV +L  +  K R+ L  +
Sbjct: 611  PDPERVFYAGQVVKVVVLNCEPSKERMLLSFR 642



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             + + +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 750  KSFAEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 808

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
              K+  VD+EK+R+ L ++ S
Sbjct: 809  VAKVTNVDEEKQRMLLSLRLS 829


>gi|291404761|ref|XP_002718640.1| PREDICTED: programmed cell death 11 isoform 1 [Oryctolagus cuniculus]
          Length = 1875

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 388/1406 (27%), Positives = 653/1406 (46%), Gaps = 164/1406 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D   +  NE    E+ L    
Sbjct: 80   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTEKLNEQMTQEEPLKDLL 139

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L   +K  GKR + LSL    + K LS E ++ GM+LT  V 
Sbjct: 140  RLPELFAPGMLVRCVVRSLAITEK--GKRSVKLSLNPKNVNKVLSAEALKPGMLLTGTVS 197

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G ++K G  L  ++  +     VV L
Sbjct: 198  SLEDHGYLVDIGVGGTRAFLPLQKAQEYIRQKNKGANLKVGQYLHCIIEEVKGDGGVVSL 257

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL +FTG VD  HL  
Sbjct: 258  SVGHAEVSAAIASEEQSWTLNNLLPGLVVKAQVQKVTRFGLTLNFLKFFTGLVDFMHLDP 317

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQ 288
                T + N     + V A IL V P ++ V L+L P  L    P + +    +G + D 
Sbjct: 318  KKVGTYFSN-----QAVRACILCVHPRTKVVRLSLRPIFLQPGRPLTRLSCQHLGAVLDD 372

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V       G    + +  +   AY  +S +++ +     + +K G+  + RI+ +  L
Sbjct: 373  VPVQGFFIKAGATFSLKNGVL---AYARLSHLSDSKKVFKPEAFKPGNTHKCRIIDYSPL 429

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + L    L+ S  E   F + D+KPG V+KG V+ +  +G +++    ++ L P  H+++
Sbjct: 430  DELVLLSLRTSIIEAQYFRYHDIKPGAVIKGTVLTIKPYGILLKVGERIRGLVPPSHLAD 489

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G EL  RVL    ++K++ +T KKTLV+SKL  ++ YA+A   L THG
Sbjct: 490  ILMKNPEKKYHIGEELKCRVLLCDPEAKKLIMTLKKTLVESKLPPITCYADAQPGLQTHG 549

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
             I +++ +GC V+FYN VQG  P+ EL      +P S+++ GQVVK  +++S P+  R+ 
Sbjct: 550  VIIRVKDYGCIVKFYNDVQGLVPKHELSAQYIPDPGSVFYTGQVVKVVVLNSEPSKERML 609

Query: 527  LSFMM------KPTRVSEDDLVKLGSLVSGVVDV----VTPNAVVVYVIAKGYSKGTIPT 576
            LSF +      K     +      G  V  +VDV     T + + V V+        +PT
Sbjct: 610  LSFKLLSDGEPKKEHAGQGQKKGRGVTVGQLVDVKVLEKTKDGLEVAVLPHNIP-AFLPT 668

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     +L L  K +L+++ +  Q P + S I
Sbjct: 669  SHLSDHVANGPLLYHWLQAGDILHRVLCLSQSEKHLFLCRKPALVSTVEGDQDPKNFSEI 728

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 729  HPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSPSDHFVEGQTVVAKVTNV 788

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D +      LL + +  LQ      S  +   ++ +     
Sbjct: 789  DEEKQRMLLSLRLSDCMLGDVA-STSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAKMTP 847

Query: 750  GSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAE 806
            G V++  V E  + G V+       V G +   + +  AG  VESG   +  IL+V   +
Sbjct: 848  GMVLDLMVQEVLEDGCVLF--SGGPVPGLVLKASKYHRAGQEVESGQKKKVVILNVDMLK 905

Query: 807  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 866
              V +SL    +D        R+A+K K+  E       HQ   AIV+ ++E++ V SL 
Sbjct: 906  LEVHVSLLQNLVD--------RKAKKLKKGSE-------HQ---AIVQHLEESFAVASLV 947

Query: 867  EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 925
            E  H   ++  S  N T +F  ++   GQ V  T+       T G LL +   +++    
Sbjct: 948  ETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT-GFLLAVEGPVAKRTMR 1006

Query: 926  SSKRAK------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 967
             +++                    KK +  +G  V   +  +KP  + +    G  G IH
Sbjct: 1007 QTRKDSEAVDEDEEVDPALAVGPIKKHALSIGDKVTGTVKSVKPTHVVVTLEDGITGCIH 1066

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKPS 1018
             +++ DD   V  +  +  K+G+TVTAR+I     K+ K  P     F+    ELS++PS
Sbjct: 1067 ASQILDD-VPVGTSPTAKLKVGKTVTARVIGGRDVKTFKFLPISHPRFIRTIPELSVRPS 1125

Query: 1019 ML-----------TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQ 1065
             L           +VS +     ++      GQ VT ++  Y V  +W  + I+  ++ +
Sbjct: 1126 ELEKDGHTALNTYSVSPVEKIRQYQ-----AGQTVTCFLKKYNVVKKWLEVEIAPDIRGR 1180

Query: 1066 LFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1125
            + +L ++     L+   ++F +G+A+   V+     K  L L L             I  
Sbjct: 1181 IPLLLTSLSFKVLKCPDKKFRVGQALKATVVGPVSSKAFLCLSL-------------IGP 1227

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
              ++    +G++  GR+ ++     GL V       GRV         VSD    Y E  
Sbjct: 1228 HKLE----KGEVAMGRVVEVTPN-KGLTVSFPFGKKGRVSI-----FHVSD---SYSE-- 1272

Query: 1186 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1245
              PL  +   + V+C VL     +     + LSLR      SS  + +  + V+ P   +
Sbjct: 1273 -TPLQDFVPQKIVRCYVLSTEEQM-----LTLSLR------SSRTNPETKSKVEDP--EI 1318

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE----KEFPIG 1301
            + I+D+    +++GYV++V   G    L   +       ++S  Y  S +    K  P G
Sbjct: 1319 DSIQDVKEGQLLRGYVRSVQPNGVLFSLGPSVTGLADYPHVSQ-YSPSEKDLYNKYLPEG 1377

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            KL+  +VL +      VE++    D+
Sbjct: 1378 KLLTAKVLRLNHRQDLVELSFLPCDT 1403



 Score =  287 bits (735), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 149/305 (48%), Positives = 209/305 (68%), Gaps = 11/305 (3%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDA--------PRTPDEFERLVRSSPNSSFV 1563
            DEK +   KKK K+ERE E + AE+ L   +A        P + DEF+RLV SS NSS +
Sbjct: 1566 DEKPHPATKKKSKKERELEKQKAEKELSRIEAALMDPGRQPESADEFDRLVLSSANSSIL 1625

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1626 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLGK 1683

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1683
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1684 VFERAVQYNEPLKVFLHLADIYTKSEKFQEAAELYNRMLKRFRQEKAVWIKYGAFLLRRS 1743

Query: 1684 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742
            Q G    V+QRAL  LP  +H+  I + A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1744 QAGASHRVLQRALECLPAKEHMDVIVKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1803

Query: 1743 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1804 VYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1863

Query: 1803 EYVES 1807
            EYVE+
Sbjct: 1864 EYVEA 1868



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            +  D+ P  +++G V  +   G  + +  ++   V  S+L+D  +++PEK++ IG+ +  
Sbjct: 448  RYHDIKPGAVIKGTVLTIKPYGILLKVGERIRGLVPPSHLADILMKNPEKKYHIGEELKC 507

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            RVL  +P +K++ +TLK    +T  +S+   I   ++   G    G I RV+ YG  +  
Sbjct: 508  RVLLCDPEAKKLIMTLK----KTLVESKLPPITCYADAQPGLQTHGVIIRVKDYGCIVKF 563

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             N ++ GL    ELS  ++ +  +++  G+ VKV +L  +  K R+ L  K
Sbjct: 564  YN-DVQGLVPKHELSAQYIPDPGSVFYTGQVVKVVVLNSEPSKERMLLSFK 613



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             N S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 723  KNFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSPSDHFVEGQTV 781

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
              K+  VD+EK+R+ L ++ S
Sbjct: 782  VAKVTNVDEEKQRMLLSLRLS 802



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 119/272 (43%), Gaps = 48/272 (17%)

Query: 1178 LSGYDEGQFDPLSGYDEGQFVKCKV-----------LEISRTVRG--------------- 1211
            L+ Y     + +  Y  GQ V C +           +EI+  +RG               
Sbjct: 1135 LNTYSVSPVEKIRQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLK 1194

Query: 1212 ----TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-S 1266
                 F V  +L++++ G  S+ +  L   +  P K LEK E      +  G V  VT +
Sbjct: 1195 CPDKKFRVGQALKATVVGPVSSKAF-LCLSLIGPHK-LEKGE------VAMGRVVEVTPN 1246

Query: 1267 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
            KG  +        +V + ++SD Y E+P ++F   K+V   VLS E   + + ++L++S 
Sbjct: 1247 KGLTVSFPFGKKGRVSIFHVSDSYSETPLQDFVPQKIVRCYVLSTE--EQMLTLSLRSSR 1304

Query: 1327 SRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFITI--ENTNLVGLCHVSELSE 1379
            +   ++S     EI+++ ++  G ++ G ++ V+  G+  ++    T L    HVS+ S 
Sbjct: 1305 TNPETKSKVEDPEIDSIQDVKEGQLLRGYVRSVQPNGVLFSLGPSVTGLADYPHVSQYSP 1364

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
               D        G+ +  K+L+++  +  + L
Sbjct: 1365 SEKDLYNKYLPEGKLLTAKVLRLNHRQDLVEL 1396


>gi|302667984|ref|XP_003025570.1| hypothetical protein TRV_00210 [Trichophyton verrucosum HKI 0517]
 gi|291189685|gb|EFE44959.1| hypothetical protein TRV_00210 [Trichophyton verrucosum HKI 0517]
          Length = 1799

 Score =  409 bits (1050), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 393/1412 (27%), Positives = 663/1412 (46%), Gaps = 187/1412 (13%)

Query: 485  QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 541
            QGF   S L    +D        Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 481  QGFVHLSRLADGRVDSISSIEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 537

Query: 542  VKL-----GSLVSGVVD--VVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSV 592
             +L     GS+V G ++  ++ P  +   +++   S  G +P  H+AD  L+H    +  
Sbjct: 538  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMADTKLQHP---EKK 594

Query: 593  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 651
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 595  FREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 654

Query: 652  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 655  AIVQFYGSVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLVVSCKDPSTV 714

Query: 712  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 771
            + D    Q  F                      E    G V+ G V E +   +++  ++
Sbjct: 715  TAD---YQSAF----------------------ENVHPGLVVSGTVFEKSSDDLLIKLQD 749

Query: 772  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 821
               +    ++H   G+  +  S +             +  V K+ RL++++ K       
Sbjct: 750  SGLIARLTSNHISDGSATKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATL---- 805

Query: 822  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 880
                  ++A  + R     +D+     V  IV+ I+ E   V  L      I    V D 
Sbjct: 806  ------KEAAAEGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDD 859

Query: 881  NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS------ETETSSSKRA---- 930
            +T + P   +   Q + ATV A+   S   R LL LK +S      ++ ++S K+A    
Sbjct: 860  HTSR-PDFGYSRFQVISATVCAVQEDSD--RFLLSLKPVSKPKQQSDSSSASEKKAPAVV 916

Query: 931  ---------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 981
                     K      VG + +A+IT +K  +L +       GRI I+E+ D   ++ + 
Sbjct: 917  LNNPIDEELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDR 976

Query: 982  L--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1030
                 +F   + +  R++   +  + K         K  ++ELS K S L  SE    L 
Sbjct: 977  KRPLKSFHSKEILPVRVLGIHDARNHKFLPISHRAGKVSVYELSTKRSCLQASEF-KPLH 1035

Query: 1031 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1090
             E+  + +G+R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A
Sbjct: 1036 LEQ--LKVGERYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSA 1093

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
            +   V  I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI     
Sbjct: 1094 LQVAVTGIDAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR-- 1142

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
             ++VQI  ++ G V   ++ +          D  + +P +      F K + L +     
Sbjct: 1143 QVLVQINDNVVGAVSLIDMAD----------DYTKVNPTN------FHKNEALRVCV--- 1183

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
                V++ + +     S   S  LS+ +      +  I++L    IV+G+V+ V + G F
Sbjct: 1184 ----VDVDIPNKKICFSVRPSKVLSSSLPVVDPEITSIDNLKVGQIVRGFVRRVDNIGVF 1239

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            + L   + A + +S+LSD +++  + EF + +LV GR+  V+  + +V++TLK S +   
Sbjct: 1240 VTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKVQMTLKKS-ALDP 1298

Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1389
            +      L +L VG IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y
Sbjct: 1299 NYKPPFTLKDLKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLY 1358

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD--EAIEEVGSYNRSS 1447
               + VK K+LKVD EK +I+LG+K+SYF++      +  EEESD   + +E G      
Sbjct: 1359 EKDDIVKAKVLKVDLEKGQIALGLKASYFRD------LPEEEESDANSSDDEAGGIK--- 1409

Query: 1448 LLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD-------MDNGIS- 1499
             L+  S +  D+ M    GG  +  + +        E    +  PD       + +G   
Sbjct: 1410 -LDVGSDSDDDVSM----GGVDLEGEDDEEEEEDSDEDIEMENAPDSTKKSGLVTSGFDW 1464

Query: 1500 QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1559
               G  D  +  DE        K K+ R+ EI+      L+ + P+T  ++ERL+   P+
Sbjct: 1465 TGDGDKDMNEAADESTEDDGATKRKKRRKAEIQVDRTGDLDANGPQTVADYERLLLGEPD 1524

Query: 1560 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619
            SS +W+KYMAF L + +V+KAR IA+RAL+T++I ++ EKLN+WVA  NLEN +GN  ++
Sbjct: 1525 SSLLWLKYMAFQLELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLNLENTFGN--DD 1582

Query: 1620 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1679
             + +VF+ A +Y D  +++  +  ++ ++ + + ADEL    +KK   S   +       
Sbjct: 1583 TLDEVFKSACEYNDAHEIYDRMTSIFIQSGKAEKADELFQTALKKKVSSTPDFFLNYANF 1642

Query: 1680 LKQQQEGVQA---VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEY 1734
            L    E  Q    ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +
Sbjct: 1643 LFDTMEAPQRGRDLLPRALQSLPPHTHVEVTSRFGQLEFRSPNGGIERGRTVFEGLLSSF 1702

Query: 1735 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLF 1778
            PKR DLW++ LD EI++GD + +R LFER + +                 L  K+ KFLF
Sbjct: 1703 PKRIDLWNVLLDLEIKVGDEEQVRRLFERVLGIGHGVVAADGTKGGPKKKLKEKQAKFLF 1762

Query: 1779 KKYLEYEKSV---GEEERIEYVKQKAMEYVES 1807
            KK+L +E+ +   G+ + ++ VK +A +YV S
Sbjct: 1763 KKWLAFEEKIAPEGDTKMVDEVKARAADYVRS 1794



 Score =  200 bits (509), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 282/1203 (23%), Positives = 508/1203 (42%), Gaps = 109/1203 (9%)

Query: 64   VGQLVSCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 120
            VGQ +   V   ++ +DD+K   K+ I LS+       GL+   +     + A V S+ED
Sbjct: 217  VGQYLRAAVTATIRNEDDRKVKNKKHIELSIEPHAANSGLTKADMVVNATVQASVVSVED 276

Query: 121  HGYILHFGLP--SFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDP 175
            HG ++  GL      GF+    L   +G+D   VK G +   +V   + +  V+ LS+D 
Sbjct: 277  HGLVMDLGLEENEAKGFISSRELP--AGVDISTVKEGSVFLCIVTGQNASGTVIKLSADL 334

Query: 176  DTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
             +              +I+  +PG      +  +   G++   +      VD+ H   + 
Sbjct: 335  ASAGSVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVIHSGASD 394

Query: 234  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN----------PYLLHNRAPPSHVKVG 283
               +    Y+   K+  R++   P+S  + L  +             L N A      + 
Sbjct: 395  GKKDLTTKYHAGAKIKGRLITTYPSSDPIKLGFSILDSVLKFSPTATLVNGADDDLPSIS 454

Query: 284  DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKEGSCVRV 340
            DI  + KV  VD  LGL + + ST      +V +S +A+   + +  +E  YK GS    
Sbjct: 455  DIIPEVKVTYVDSSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSIEGPYKVGSTHEG 512

Query: 341  RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPG 395
            RI+GF  ++ L    L+    E   F   DV  G VVKGK+    I  +   G IV    
Sbjct: 513  RIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTD 572

Query: 396  GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILS 453
             +  L P  HM++ ++  P KKF+ G ++  RVL V  + +++ +T KK+L+ S  A   
Sbjct: 573  SISGLVPEMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWK 632

Query: 454  SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 513
             Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQVV  
Sbjct: 633  DYESISAGSRSPGTLIKIQNNGAIVQFYGSVKGFLPVSEMSEAYIKDPSQHFTVGQVVNV 692

Query: 514  RIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKG 568
              ++    + R+ +S    P+ V+ D     + V  G +VSG V   + + +++ +   G
Sbjct: 693  HALTVDAENERLVVS-CKDPSTVTADYQSAFENVHPGLVVSGTVFEKSSDDLLIKLQDSG 751

Query: 569  YSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ 625
                 + + H++D      T   + I+ G + D LLV   + S+ L+  + K +L  +A 
Sbjct: 752  LI-ARLTSNHISDGSATKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATLKEAAA 810

Query: 626  Q--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 683
            +  LP+    I     V G V NII  G FV FL  LTG  P+    D   +     Y  
Sbjct: 811  EGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHTSRPDFGYSR 870

Query: 684  GQSVRSNILDVNSETGRITLSLK-----QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 738
             Q + + +  V  ++ R  LSLK     +    S+ AS        E+K   +  +    
Sbjct: 871  FQVISATVCAVQEDSDRFLLSLKPVSKPKQQSDSSSAS--------EKKAPAVVLNNPID 922

Query: 739  SELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDVYGFITHHQLAGAT 788
             ELK +E  ++G + + K+    D    VV        +   E  D +  I   +    +
Sbjct: 923  EELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLKS 982

Query: 789  VESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 846
              S  ++   +L +  A+  + + +S +   +  +  +      Q  + K    + L V 
Sbjct: 983  FHSKEILPVRVLGIHDARNHKFLPISHRAGKVSVYELSTKRSCLQASEFKPLHLEQLKVG 1042

Query: 847  QTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALP 904
            +     V  + E+ L L++ P     +    +S D + +   QK F  G ++   V  + 
Sbjct: 1043 ERYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVTGID 1102

Query: 905  SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 964
            +     RL L  +  S  +T +     K      G ++   +T+I   ++ ++      G
Sbjct: 1103 AEKN--RLDLSARIGSSAKTLTVADLSK------GMILVGRVTKITDRQVLVQINDNVVG 1154

Query: 965  RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE 1024
             + + ++ DD + V     +NF   + +   ++   + P+ K  F    S++PS +  S 
Sbjct: 1155 AVSLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKICF----SVRPSKVLSSS 1206

Query: 1025 IG--SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1082
            +      +    ++ +GQ V G+V +VDN    +T+   + A  +I  S    S L+E++
Sbjct: 1207 LPVVDPEITSIDNLKVGQIVRGFVRRVDNIGVFVTLGHDVTA--YIRVSDLSDSFLKEWK 1264

Query: 1083 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1142
              F + + V G +  ++K+   +++ L+      + K      D     +  G IV G++
Sbjct: 1265 DEFQVDQLVQGRLTVVDKDNNKVQMTLKKSALDPNYKPPFTLKD-----LKVGQIVTGKV 1319

Query: 1143 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
             K+      + +    +L G  H +E+    V D        Q      Y++   VK KV
Sbjct: 1320 RKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT------QL-----YEKDDIVKAKV 1368

Query: 1203 LEI 1205
            L++
Sbjct: 1369 LKV 1371


>gi|291404763|ref|XP_002718641.1| PREDICTED: programmed cell death 11 isoform 2 [Oryctolagus cuniculus]
          Length = 1860

 Score =  409 bits (1050), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 388/1406 (27%), Positives = 653/1406 (46%), Gaps = 164/1406 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D   +  NE    E+ L    
Sbjct: 80   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTEKLNEQMTQEEPLKDLL 139

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L   +K  GKR + LSL    + K LS E ++ GM+LT  V 
Sbjct: 140  RLPELFAPGMLVRCVVRSLAITEK--GKRSVKLSLNPKNVNKVLSAEALKPGMLLTGTVS 197

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G ++K G  L  ++  +     VV L
Sbjct: 198  SLEDHGYLVDIGVGGTRAFLPLQKAQEYIRQKNKGANLKVGQYLHCIIEEVKGDGGVVSL 257

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL +FTG VD  HL  
Sbjct: 258  SVGHAEVSAAIASEEQSWTLNNLLPGLVVKAQVQKVTRFGLTLNFLKFFTGLVDFMHLDP 317

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQ 288
                T + N     + V A IL V P ++ V L+L P  L    P + +    +G + D 
Sbjct: 318  KKVGTYFSN-----QAVRACILCVHPRTKVVRLSLRPIFLQPGRPLTRLSCQHLGAVLDD 372

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V       G    + +  +   AY  +S +++ +     + +K G+  + RI+ +  L
Sbjct: 373  VPVQGFFIKAGATFSLKNGVL---AYARLSHLSDSKKVFKPEAFKPGNTHKCRIIDYSPL 429

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + L    L+ S  E   F + D+KPG V+KG V+ +  +G +++    ++ L P  H+++
Sbjct: 430  DELVLLSLRTSIIEAQYFRYHDIKPGAVIKGTVLTIKPYGILLKVGERIRGLVPPSHLAD 489

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G EL  RVL    ++K++ +T KKTLV+SKL  ++ YA+A   L THG
Sbjct: 490  ILMKNPEKKYHIGEELKCRVLLCDPEAKKLIMTLKKTLVESKLPPITCYADAQPGLQTHG 549

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
             I +++ +GC V+FYN VQG  P+ EL      +P S+++ GQVVK  +++S P+  R+ 
Sbjct: 550  VIIRVKDYGCIVKFYNDVQGLVPKHELSAQYIPDPGSVFYTGQVVKVVVLNSEPSKERML 609

Query: 527  LSFMM------KPTRVSEDDLVKLGSLVSGVVDV----VTPNAVVVYVIAKGYSKGTIPT 576
            LSF +      K     +      G  V  +VDV     T + + V V+        +PT
Sbjct: 610  LSFKLLSDGEPKKEHAGQGQKKGRGVTVGQLVDVKVLEKTKDGLEVAVLPHNIP-AFLPT 668

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     +L L  K +L+++ +  Q P + S I
Sbjct: 669  SHLSDHVANGPLLYHWLQAGDILHRVLCLSQSEKHLFLCRKPALVSTVEGDQDPKNFSEI 728

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 729  HPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSPSDHFVEGQTVVAKVTNV 788

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D +      LL + +  LQ      S  +   ++ +     
Sbjct: 789  DEEKQRMLLSLRLSDCMLGDVA-STSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAKMTP 847

Query: 750  GSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAE 806
            G V++  V E  + G V+       V G +   + +  AG  VESG   +  IL+V   +
Sbjct: 848  GMVLDLMVQEVLEDGCVLF--SGGPVPGLVLKASKYHRAGQEVESGQKKKVVILNVDMLK 905

Query: 807  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 866
              V +SL    +D        R+A+K K+  E       HQ   AIV+ ++E++ V SL 
Sbjct: 906  LEVHVSLLQNLVD--------RKAKKLKKGSE-------HQ---AIVQHLEESFAVASLV 947

Query: 867  EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 925
            E  H   ++  S  N T +F  ++   GQ V  T+       T G LL +   +++    
Sbjct: 948  ETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT-GFLLAVEGPVAKRTMR 1006

Query: 926  SSKRAK------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 967
             +++                    KK +  +G  V   +  +KP  + +    G  G IH
Sbjct: 1007 QTRKDSEAVDEDEEVDPALAVGPIKKHALSIGDKVTGTVKSVKPTHVVVTLEDGITGCIH 1066

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKPS 1018
             +++ DD   V  +  +  K+G+TVTAR+I     K+ K  P     F+    ELS++PS
Sbjct: 1067 ASQILDD-VPVGTSPTAKLKVGKTVTARVIGGRDVKTFKFLPISHPRFIRTIPELSVRPS 1125

Query: 1019 ML-----------TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQ 1065
             L           +VS +     ++      GQ VT ++  Y V  +W  + I+  ++ +
Sbjct: 1126 ELEKDGHTALNTYSVSPVEKIRQYQ-----AGQTVTCFLKKYNVVKKWLEVEIAPDIRGR 1180

Query: 1066 LFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1125
            + +L ++     L+   ++F +G+A+   V+     K  L L L             I  
Sbjct: 1181 IPLLLTSLSFKVLKCPDKKFRVGQALKATVVGPVSSKAFLCLSL-------------IGP 1227

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
              ++    +G++  GR+ ++     GL V       GRV         VSD    Y E  
Sbjct: 1228 HKLE----KGEVAMGRVVEVTPN-KGLTVSFPFGKKGRVSI-----FHVSD---SYSE-- 1272

Query: 1186 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1245
              PL  +   + V+C VL     +     + LSLR      SS  + +  + V+ P   +
Sbjct: 1273 -TPLQDFVPQKIVRCYVLSTEEQM-----LTLSLR------SSRTNPETKSKVEDP--EI 1318

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE----KEFPIG 1301
            + I+D+    +++GYV++V   G    L   +       ++S  Y  S +    K  P G
Sbjct: 1319 DSIQDVKEGQLLRGYVRSVQPNGVLFSLGPSVTGLADYPHVSQ-YSPSEKDLYNKYLPEG 1377

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            KL+  +VL +      VE++    D+
Sbjct: 1378 KLLTAKVLRLNHRQDLVELSFLPCDT 1403



 Score =  287 bits (735), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 149/305 (48%), Positives = 209/305 (68%), Gaps = 11/305 (3%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDA--------PRTPDEFERLVRSSPNSSFV 1563
            DEK +   KKK K+ERE E + AE+ L   +A        P + DEF+RLV SS NSS +
Sbjct: 1551 DEKPHPATKKKSKKERELEKQKAEKELSRIEAALMDPGRQPESADEFDRLVLSSANSSIL 1610

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1611 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLGK 1668

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1683
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1669 VFERAVQYNEPLKVFLHLADIYTKSEKFQEAAELYNRMLKRFRQEKAVWIKYGAFLLRRS 1728

Query: 1684 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742
            Q G    V+QRAL  LP  +H+  I + A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1729 QAGASHRVLQRALECLPAKEHMDVIVKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1788

Query: 1743 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1789 VYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1848

Query: 1803 EYVES 1807
            EYVE+
Sbjct: 1849 EYVEA 1853



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            +  D+ P  +++G V  +   G  + +  ++   V  S+L+D  +++PEK++ IG+ +  
Sbjct: 448  RYHDIKPGAVIKGTVLTIKPYGILLKVGERIRGLVPPSHLADILMKNPEKKYHIGEELKC 507

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            RVL  +P +K++ +TLK    +T  +S+   I   ++   G    G I RV+ YG  +  
Sbjct: 508  RVLLCDPEAKKLIMTLK----KTLVESKLPPITCYADAQPGLQTHGVIIRVKDYGCIVKF 563

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             N ++ GL    ELS  ++ +  +++  G+ VKV +L  +  K R+ L  K
Sbjct: 564  YN-DVQGLVPKHELSAQYIPDPGSVFYTGQVVKVVVLNSEPSKERMLLSFK 613



 Score = 45.8 bits (107), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             N S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 723  KNFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSPSDHFVEGQTV 781

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
              K+  VD+EK+R+ L ++ S
Sbjct: 782  VAKVTNVDEEKQRMLLSLRLS 802



 Score = 45.4 bits (106), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 101/207 (48%), Gaps = 18/207 (8%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
            F V  +L++++ G  S+ +  L   +  P K LEK E      +  G V  VT +KG  +
Sbjct: 1200 FRVGQALKATVVGPVSSKAF-LCLSLIGPHK-LEKGE------VAMGRVVEVTPNKGLTV 1251

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                    +V + ++SD Y E+P ++F   K+V   VLS E   + + ++L++S +   +
Sbjct: 1252 SFPFGKKGRVSIFHVSDSYSETPLQDFVPQKIVRCYVLSTE--EQMLTLSLRSSRTNPET 1309

Query: 1332 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITI--ENTNLVGLCHVSELSEDHVDN 1384
            +S     EI+++ ++  G ++ G ++ V+  G+  ++    T L    HVS+ S    D 
Sbjct: 1310 KSKVEDPEIDSIQDVKEGQLLRGYVRSVQPNGVLFSLGPSVTGLADYPHVSQYSPSEKDL 1369

Query: 1385 IETIYRAGEKVKVKILKVDKEKRRISL 1411
                   G+ +  K+L+++  +  + L
Sbjct: 1370 YNKYLPEGKLLTAKVLRLNHRQDLVEL 1396


>gi|350636490|gb|EHA24850.1| hypothetical protein ASPNIDRAFT_48843 [Aspergillus niger ATCC 1015]
          Length = 1822

 Score =  408 bits (1048), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 364/1350 (26%), Positives = 646/1350 (47%), Gaps = 174/1350 (12%)

Query: 542  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
            V LG++V G V+  ++  N V  ++  +A G + G +P+ H AD     T ++   K  +
Sbjct: 559  VTLGAVVKGKVEKLLIGANGVDGLIVALADGIT-GLVPSMHFAD-----TPLQFPEKKFH 612

Query: 598  E----FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            E      ++L ++ E   + L+ K SL+NS   +  D   I P +   G +  I   G  
Sbjct: 613  EGMTVSTRILSVNLEKRQIRLTLKKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAV 672

Query: 654  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
            V+F G + GF P S+  +    D S+ + +GQ V  + L V++   ++ +S K       
Sbjct: 673  VQFYGPIRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDASREKLAVSCK------- 725

Query: 714  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 773
            D     E +                   K  E    G ++ G V E +    ++  +++ 
Sbjct: 726  DPETFTEAYR------------------KAFENIHPGMLVSGTVFEKSADDTLLKLDDYG 767

Query: 774  DVYGFITHHQLAGATVESGSVI----------QAAILDVAKAERLVDLSLKTVFIDRFRE 823
             V      H   G+  +  S +          +  ++D+ +A RL+ ++           
Sbjct: 768  LVARLNVEHVADGSPSKQASTLSKIRVGQKLNELMVIDIQRAHRLIKVT----------- 816

Query: 824  ANSNRQAQKKKRKREAS----KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS--- 876
                RQ+ KK  K  +     +DL     V   +  +  N + +        IG      
Sbjct: 817  ---GRQSLKKAAKHGSIPSKIEDLKEGADVTGFIRNITMNGVFVEF--LGGVIGLVPKRL 871

Query: 877  VSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSST-AGRLLLLLKAISETE 923
            V D N  K P      GQ V ATV ++            P+ +T AG           T 
Sbjct: 872  VGDENVNK-PDYGMARGQVVTATVHSVDADFQRFILSMNPAEATHAGAKKKAAAKPEPTP 930

Query: 924  TSSS------KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 977
            T  +      +  K  S +  G + + +I  ++  ++ ++      GRI ++EV D   +
Sbjct: 931  TDDAVANAIDEGIKSMSDFTFGRVTKCKIVSVRATQVNVQLADNIQGRIDVSEVFDKWED 990

Query: 978  VVE--NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIG 1026
            + +       F+  Q ++ARI+   +  + K         K  ++ELS+KPS L  +   
Sbjct: 991  IKDRKQPLRFFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAAN-P 1049

Query: 1027 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1086
            S L  E+  V +G    G+V  V ++   + +S +++ +L ++D++ + S L + ++ + 
Sbjct: 1050 SPLNLEQ--VQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASDDLSLLADVEKHYP 1107

Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
            +G A+  HV +++ +K  L L  +   D +  + V +           G I+ GR++K+ 
Sbjct: 1108 VGSAMKVHVSAVDADKGRLDLSAKQRSDKLVFEDVSV-----------GMILPGRVTKVT 1156

Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
                 +++Q+   + G V   ++ +          D  + +P +   + + ++  V+ I 
Sbjct: 1157 ERQ--VIMQLSKSIVGAVDLIDMAD----------DYTKANP-TVCQKNEVLRACVIAID 1203

Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1266
            +  +    + LSLR S           LS+ +    K +  I+ L  N IV+G+V+ V  
Sbjct: 1204 KANK---KISLSLRPS---------KVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVAD 1251

Query: 1267 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
             G F+ + R + A V +S+LSD Y++  +  F + +LV GRV   +    +++++LK S 
Sbjct: 1252 NGLFVTVGRDVTAYVRISDLSDSYLKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESV 1311

Query: 1327 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNI 1385
                 ++ +  L +L  G +V G++++VE +G FI I+ + N+ GLCH SE++E+ V++ 
Sbjct: 1312 LDPNYKAPLT-LHDLKPGQVVTGKVRKVEEFGAFIVIDGSKNISGLCHRSEMAENRVEDA 1370

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN- 1444
             T+Y  G+ VK KILK+D+++ +IS G+K+SYF  + D      ++    +++ +G  + 
Sbjct: 1371 RTLYEEGDAVKAKILKIDRKQEKISFGLKASYFDEEEDEDSEEDDDSEGISLDGLGGVDV 1430

Query: 1445 RSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGH 1504
              S  E S V++  +D+E +       +  E     P      D          S N   
Sbjct: 1431 EGSDDEESDVSMGGVDLEDDSDDESEQSDDEEMTDAPAKASRQDGGLGAGGFDWSGNNQD 1490

Query: 1505 TDEAKT-IDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFV 1563
             DEA    D  +   ++ K+K+ R+ EI+      L+ + P++  ++ERL+   P+SS +
Sbjct: 1491 DDEAGARSDSDDEEDSRPKKKKNRKPEIQVDRTGDLDANGPQSVADYERLLLGEPDSSLL 1550

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L + +VEKAR IAERAL+TI I ++ EKLNIWVA  NLEN YGN  ++ +  
Sbjct: 1551 WLQYMAFQLELGEVEKAREIAERALRTITIGQDAEKLNIWVAMLNLENTYGN--DDTLED 1608

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ 1682
            VF+RA QY D ++V+   + +Y ++ +N+ AD+L    + KK   S K ++     L   
Sbjct: 1609 VFKRACQYNDTQEVYERTISIYIQSGKNEKADDLFQTALKKKVFGSPKFFINYASFLFDT 1668

Query: 1683 QQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRT 1738
                E  +A++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PK+ 
Sbjct: 1669 MAAPERARALLPRALQSLPSHTHVELTSKFGQLEFRSANGDIERGRTVFEGLLSSFPKKI 1728

Query: 1739 DLWSIYLDQEIRLGDVDLIRGLFERAISL----------------SLPPKKMKFLFKKYL 1782
            DLW+I LD EI+ GD + +R LFER + +                 + PK+ KF FKK+L
Sbjct: 1729 DLWNILLDLEIKNGDAEQVRRLFERVLGIRDTKKGGAAAAVEASKKVRPKQAKFFFKKWL 1788

Query: 1783 EYEKSV-----GEEERIEYVKQKAMEYVES 1807
             +E+ +     G ++ +E +K KA EYV+S
Sbjct: 1789 SFEEKLASAEGGNDKMVEEIKAKAAEYVKS 1818



 Score =  157 bits (396), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 185/754 (24%), Positives = 329/754 (43%), Gaps = 58/754 (7%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE------------ 51
           + I  G  + G V+ +N  D+ + LP  L G      ++  +L+ +IE            
Sbjct: 161 KRIVPGTMVLGQVSSINAHDIGLSLPNNLTGYVPLT-SVSKVLEEKIEKILKDDGSDEEE 219

Query: 52  ---ANEDNLLPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETV 105
               ++   L   F++GQ +   V+       D     +++I LS+       GLS   +
Sbjct: 220 DDDEDDSLDLHKYFYLGQYLRAYVVSAGSNAADASAKSRKRIELSVDPRQANSGLSKSDL 279

Query: 106 QEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSI 162
                + A V S+EDHG ++  GL      GF+    +  +     +K G +   +V   
Sbjct: 280 VVNSAVQASVVSVEDHGLVMDLGLEGGEVKGFMSSKEVDPKTQPSSIKEGSVFLCMVTGQ 339

Query: 163 DRTRKVVYLSSD-PDTVSKCVTKDLK-GISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
           +    V+ LS++ P   S   +  L    +I   +PG      +  +   G+    +   
Sbjct: 340 NANGSVIKLSANLPSAGSIKKSHYLSTAPTITSFLPGTAAEILLTDVSSTGMAGKIMGML 399

Query: 221 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH---NRA 275
             TVD+     +    +    Y+   K+  R++   P++    VG +L  ++        
Sbjct: 400 DATVDLVQSGGSSGKDDLTKKYSTGAKIKGRLVCTFPSAEPYKVGFSLLDHVAKFATEGG 459

Query: 276 PPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 331
           P S      +  I  ++KVV+V+ GLG+ + I ST      +V +S +++ +V  +  + 
Sbjct: 460 PGSSDDAPAISAIVPEAKVVKVEPGLGVYVQIGST--KHLGFVHVSRLSDGQVETISPEL 517

Query: 332 --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVD 385
             ++  S    R++G+  ++ L     +    +       DV  G VVKGKV    I  +
Sbjct: 518 GPFRVDSVHEGRVVGYSAIDNLYLLSFEKKVIDQPFLRVEDVTLGAVVKGKVEKLLIGAN 577

Query: 386 SF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 442
              G IV    G+  L P  H ++  +  P KKF  G  +  R+L V  + ++I +T KK
Sbjct: 578 GVDGLIVALADGITGLVPSMHFADTPLQFPEKKFHEGMTVSTRILSVNLEKRQIRLTLKK 637

Query: 443 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
           +L+ S+ AI   Y E T    + G I KI+ HG  V+FY  ++GF P SE+      +PS
Sbjct: 638 SLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAVVQFYGPIRGFLPVSEMSEAYIKDPS 697

Query: 503 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTP 557
             + +GQVV    + S+ ASR         P   +E      + +  G LVSG V   + 
Sbjct: 698 QHFRLGQVVNVHAL-SVDASREKLAVSCKDPETFTEAYRKAFENIHPGMLVSGTVFEKSA 756

Query: 558 NAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSNLLL- 614
           +  ++ +   G     +  EH+AD    + A+ + S I+ G + ++L+V+D + ++ L+ 
Sbjct: 757 DDTLLKLDDYGLV-ARLNVEHVADGSPSKQASTL-SKIRVGQKLNELMVIDIQRAHRLIK 814

Query: 615 -SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
            + + SL  +A+   +PS    +   + V G++ NI   G FV FLG + G  P+    D
Sbjct: 815 VTGRQSLKKAAKHGSIPSKIEDLKEGADVTGFIRNITMNGVFVEFLGGVIGLVPKRLVGD 874

Query: 672 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
                       GQ V + +  V+++  R  LS+
Sbjct: 875 ENVNKPDYGMARGQVVTATVHSVDADFQRFILSM 908



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 178/410 (43%), Gaps = 53/410 (12%)

Query: 61   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 107
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1000 FFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1059

Query: 108  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 161
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  ++  V +
Sbjct: 1060 GSTWVGFVNNVADDCLWINLS-PNVRGRLRLMDASDDLSLLADVEKHYPVGSAMKVHVSA 1118

Query: 162  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
            +D  +  + LS+   +  K V +D   +S+ +++PG     RV  + E  V++       
Sbjct: 1119 VDADKGRLDLSAKQRS-DKLVFED---VSVGMILPG-----RVTKVTERQVIMQLSKSIV 1169

Query: 222  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 277
            G VD+  + + +    PT   KN+      + A ++ +D  ++ + L+L P  + + + P
Sbjct: 1170 GAVDLIDMADDYTKANPTVCQKNEV-----LRACVIAIDKANKKISLSLRPSKVLSSSLP 1224

Query: 278  SHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
               K      Q KV  + RG        GL + +        AYV ISD+++  +++ + 
Sbjct: 1225 VQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGR---DVTAYVRISDLSDSYLKEWKD 1281

Query: 331  KYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSF 387
             ++    V+ R+      +G     LK S  +       T  D+KPG VV GKV  V+ F
Sbjct: 1282 SFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVVTGKVRKVEEF 1341

Query: 388  GAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
            GA +   G   +  LC    M+E  +      ++ G  +  ++L +  K+
Sbjct: 1342 GAFIVIDGSKNISGLCHRSEMAENRVEDARTLYEEGDAVKAKILKIDRKQ 1391



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 154/370 (41%), Gaps = 33/370 (8%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            + +  G    G V  V +  L I L   +RG  R  DA D   D  + A+ +   P    
Sbjct: 1055 EQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASD---DLSLLADVEKHYP---- 1107

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            VG  +   V  +D DK         L L        L  E V  GM+L   V  + +   
Sbjct: 1108 VGSAMKVHVSAVDADKGR-------LDLSAKQRSDKLVFEDVSVGMILPGRVTKVTERQV 1160

Query: 124  ILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV 178
            I+     S  G +   ++A++      P +     +L+  V +ID+  K + LS  P  V
Sbjct: 1161 IMQLS-KSIVGAVDLIDMADDY-TKANPTVCQKNEVLRACVIAIDKANKKISLSLRPSKV 1218

Query: 179  --SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 236
              S    +D +  SI  L    +V   V+ + +NG+ ++     T  V I  L +++   
Sbjct: 1219 LSSSLPVQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGRDVTAYVRISDLSDSY-LK 1277

Query: 237  NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVV 292
             WK+ +   + V  R+   D     + ++L   +L  + +AP +   +K G +    KV 
Sbjct: 1278 EWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVV-TGKVR 1336

Query: 293  RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGL 351
            +V+     ++   S  +S   +   S++AE  V      Y+EG  V+ +IL   R  E +
Sbjct: 1337 KVEEFGAFIVIDGSKNISGLCHR--SEMAENRVEDARTLYEEGDAVKAKILKIDRKQEKI 1394

Query: 352  ATGILKASAF 361
            + G LKAS F
Sbjct: 1395 SFG-LKASYF 1403


>gi|145251307|ref|XP_001397167.1| rRNA biogenesis protein RRP5 [Aspergillus niger CBS 513.88]
 gi|134082698|emb|CAK42591.1| unnamed protein product [Aspergillus niger]
          Length = 1822

 Score =  408 bits (1048), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 364/1350 (26%), Positives = 646/1350 (47%), Gaps = 174/1350 (12%)

Query: 542  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
            V LG++V G V+  ++  N V  ++  +A G + G +P+ H AD     T ++   K  +
Sbjct: 559  VTLGAVVKGKVEKLLIGANGVDGLIVALADGIT-GLVPSMHFAD-----TPLQFPEKKFH 612

Query: 598  E----FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            E      ++L ++ E   + L+ K SL+NS   +  D   I P +   G +  I   G  
Sbjct: 613  EGMTVSTRILSVNLEKRQIRLTLKKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAV 672

Query: 654  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
            V+F G + GF P S+  +    D S+ + +GQ V  + L V++   ++ +S K       
Sbjct: 673  VQFYGPIRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDASREKLAVSCK------- 725

Query: 714  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 773
            D     E +                   K  E    G ++ G V E +    ++  +++ 
Sbjct: 726  DPETFTEAYR------------------KAFENIHPGMLVSGTVFEKSADDTLLKLDDYG 767

Query: 774  DVYGFITHHQLAGATVESGSVI----------QAAILDVAKAERLVDLSLKTVFIDRFRE 823
             V      H   G+  +  S +          +  ++D+ +A RL+ ++           
Sbjct: 768  LVARLNVEHVADGSPSKQASTLSKIRVGQKLNELMVIDIQRAHRLIKVT----------- 816

Query: 824  ANSNRQAQKKKRKREAS----KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS--- 876
                RQ+ KK  K  +     +DL     V   +  +  N + +        IG      
Sbjct: 817  ---GRQSLKKAAKHGSIPSEIEDLKEGADVTGFIRNITMNGVFVEF--LGGVIGLVPKRL 871

Query: 877  VSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSST-AGRLLLLLKAISETE 923
            V D N  K P      GQ V ATV ++            P+ +T AG           T 
Sbjct: 872  VGDENVNK-PDYGMARGQVVTATVHSVDADFQRFILSMNPAEATHAGAKKKAAAKPEPTP 930

Query: 924  TSSS------KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 977
            T  +      +  K  S +  G + + +I  ++  ++ ++      GRI ++EV D   +
Sbjct: 931  TDDAVANAIDEGIKSMSDFTFGRVTKCKIVSVRATQVNVQLADNIQGRIDVSEVFDKWED 990

Query: 978  VVE--NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIG 1026
            + +       F+  Q ++ARI+   +  + K         K  ++ELS+KPS L  +   
Sbjct: 991  IKDRKQPLRFFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAAN-P 1049

Query: 1027 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1086
            S L  E+  V +G    G+V  V ++   + +S +++ +L ++D++ + S L + ++ + 
Sbjct: 1050 SPLNLEQ--VQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASDDLSLLADVEKHYP 1107

Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
            +G A+  HV +++ +K  L L  +   D +  + V +           G I+ GR++K+ 
Sbjct: 1108 VGSAMKVHVSAVDADKGRLDLSAKQRSDKLVFEDVSV-----------GMILPGRVTKVT 1156

Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
                 +++Q+   + G V   ++ +          D  + +P +   + + ++  V+ I 
Sbjct: 1157 ERQ--VIMQLSKSIVGAVDLIDMAD----------DYTKANP-TVCQKNEVLRACVIAID 1203

Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1266
            +  +    + LSLR S           LS+ +    K +  I+ L  N IV+G+V+ V  
Sbjct: 1204 KANK---KISLSLRPS---------KVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVAD 1251

Query: 1267 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
             G F+ + R + A V +S+LSD Y++  +  F + +LV GRV   +    +++++LK S 
Sbjct: 1252 NGLFVTVGRDVTAYVRISDLSDSYLKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESV 1311

Query: 1327 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNI 1385
                 ++ +  L +L  G +V G++++VE +G FI I+ + N+ GLCH SE++E+ V++ 
Sbjct: 1312 LDPNYKAPLT-LHDLKPGQVVTGKVRKVEEFGAFIVIDGSKNISGLCHRSEMAENRVEDA 1370

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN- 1444
             T+Y  G+ VK KILK+D+++ +IS G+K+SYF  + D      ++    +++ +G  + 
Sbjct: 1371 RTLYEEGDAVKAKILKIDRKQEKISFGLKASYFDEEEDEDSEEDDDSEGISLDGLGGVDV 1430

Query: 1445 RSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGH 1504
              S  E S V++  +D+E +       +  E     P      D          S N   
Sbjct: 1431 EGSDDEESDVSMGGVDLEDDSDDESEQSDDEEMTDAPAKASRQDGGLGAGGFDWSGNNQD 1490

Query: 1505 TDEAKT-IDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFV 1563
             DEA    D  +   ++ K+K+ R+ EI+      L+ + P++  ++ERL+   P+SS +
Sbjct: 1491 DDEAGARSDSDDEEDSRPKKKKNRKPEIQVDRTGDLDANGPQSVADYERLLLGEPDSSLL 1550

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L + +VEKAR IAERAL+TI I ++ EKLNIWVA  NLEN YGN  ++ +  
Sbjct: 1551 WLQYMAFQLELGEVEKAREIAERALRTITIGQDAEKLNIWVAMLNLENTYGN--DDTLED 1608

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ 1682
            VF+RA QY D ++V+   + +Y ++ +N+ AD+L    + KK   S K ++     L   
Sbjct: 1609 VFKRACQYNDTQEVYERTISIYIQSGKNEKADDLFQTALKKKVFGSPKFFINYASFLFDT 1668

Query: 1683 QQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRT 1738
                E  +A++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PK+ 
Sbjct: 1669 MAAPERARALLPRALQSLPSHTHVELTSKFGQLEFRSANGDIERGRTVFEGLLSSFPKKI 1728

Query: 1739 DLWSIYLDQEIRLGDVDLIRGLFERAISL----------------SLPPKKMKFLFKKYL 1782
            DLW+I LD EI+ GD + +R LFER + +                 + PK+ KF FKK+L
Sbjct: 1729 DLWNILLDLEIKNGDAEQVRRLFERVLGIRDTKKGGAAAAVEASKKVRPKQAKFFFKKWL 1788

Query: 1783 EYEKSV-----GEEERIEYVKQKAMEYVES 1807
             +E+ +     G ++ +E +K KA EYV+S
Sbjct: 1789 SFEEKLASAEGGNDKMVEEIKAKAAEYVKS 1818



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 185/754 (24%), Positives = 330/754 (43%), Gaps = 58/754 (7%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE------------ 51
           + I  G  + G V+ +N  D+ + LP  L G      ++  +L+ +IE            
Sbjct: 161 KRIVPGTMVLGQVSSINAHDIGLSLPNNLTGYVPLT-SVSKVLEEKIEKILKDDGSDEEE 219

Query: 52  ---ANEDNLLPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETV 105
               ++   L   F++GQ +   V+       D     +++I LS+       GLS   +
Sbjct: 220 DDDEDDSLDLHKYFYLGQYLRAYVVSAGSNAADASAKSRKRIELSVDPRQANSGLSKSDL 279

Query: 106 QEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSI 162
                + A V S+EDHG ++  GL      GF+    +  +     +K G +   +V   
Sbjct: 280 VVNSAVQASVVSVEDHGLVMDLGLEGGEVKGFMSSKEVDPKTQPSSIKEGSVFLCMVTGQ 339

Query: 163 DRTRKVVYLSSD-PDTVSKCVTKDLK-GISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
           +    V+ LS++ P   S   +  L    +I   +PG      +  +   G+    +   
Sbjct: 340 NANGSVIKLSANLPSAGSIKKSHYLSTAPTITSFLPGTAAEILLTDVSSTGMAGKIMGML 399

Query: 221 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH---NRA 275
             TVD+     +    +    Y+   K+  R++   P++    VG +L  ++        
Sbjct: 400 DATVDLVQSGGSSGKDDLTKKYSTGAKIKGRLVCTFPSAEPYKVGFSLLDHVAKFATEGG 459

Query: 276 PPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 331
           P S      +  I  ++KVV+V+ GLG+ + I ST      +V +S +++ +V  +  + 
Sbjct: 460 PGSSDDAPAISAIVPEAKVVKVEPGLGVYVQIGST--KHLGFVHVSRLSDGQVETISPEL 517

Query: 332 --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVD 385
             ++  S    R++G+  ++ L     +    +       DV  G VVKGKV    I  +
Sbjct: 518 GPFRVDSVHEGRVVGYSAIDNLYLLSFEKKVIDQPFLRVEDVTLGAVVKGKVEKLLIGAN 577

Query: 386 SF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 442
              G IV    G+  L P  H ++  +  P KKF  G  +  R+L V  + ++I +T KK
Sbjct: 578 GVDGLIVALADGITGLVPSMHFADTPLQFPEKKFHEGMTVSTRILSVNLEKRQIRLTLKK 637

Query: 443 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
           +L+ S+ AI   Y E T    + G I KI+ HG  V+FY  ++GF P SE+      +PS
Sbjct: 638 SLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAVVQFYGPIRGFLPVSEMSEAYIKDPS 697

Query: 503 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTP 557
             + +GQVV    + S+ ASR         P   +E      + +  G LVSG V   + 
Sbjct: 698 QHFRLGQVVNVHAL-SVDASREKLAVSCKDPETFTEAYRKAFENIHPGMLVSGTVFEKSA 756

Query: 558 NAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSNLLL- 614
           +  ++ +   G     +  EH+AD    + A+ + S I+ G + ++L+V+D + ++ L+ 
Sbjct: 757 DDTLLKLDDYGLV-ARLNVEHVADGSPSKQASTL-SKIRVGQKLNELMVIDIQRAHRLIK 814

Query: 615 -SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
            + + SL  +A+   +PS+   +   + V G++ NI   G FV FLG + G  P+    D
Sbjct: 815 VTGRQSLKKAAKHGSIPSEIEDLKEGADVTGFIRNITMNGVFVEFLGGVIGLVPKRLVGD 874

Query: 672 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
                       GQ V + +  V+++  R  LS+
Sbjct: 875 ENVNKPDYGMARGQVVTATVHSVDADFQRFILSM 908



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 178/410 (43%), Gaps = 53/410 (12%)

Query: 61   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 107
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1000 FFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1059

Query: 108  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 161
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  ++  V +
Sbjct: 1060 GSTWVGFVNNVADDCLWINLS-PNVRGRLRLMDASDDLSLLADVEKHYPVGSAMKVHVSA 1118

Query: 162  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
            +D  +  + LS+   +  K V +D   +S+ +++PG     RV  + E  V++       
Sbjct: 1119 VDADKGRLDLSAKQRS-DKLVFED---VSVGMILPG-----RVTKVTERQVIMQLSKSIV 1169

Query: 222  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 277
            G VD+  + + +    PT   KN+      + A ++ +D  ++ + L+L P  + + + P
Sbjct: 1170 GAVDLIDMADDYTKANPTVCQKNEV-----LRACVIAIDKANKKISLSLRPSKVLSSSLP 1224

Query: 278  SHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
               K      Q KV  + RG        GL + +        AYV ISD+++  +++ + 
Sbjct: 1225 VQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGR---DVTAYVRISDLSDSYLKEWKD 1281

Query: 331  KYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSF 387
             ++    V+ R+      +G     LK S  +       T  D+KPG VV GKV  V+ F
Sbjct: 1282 SFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVVTGKVRKVEEF 1341

Query: 388  GAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
            GA +   G   +  LC    M+E  +      ++ G  +  ++L +  K+
Sbjct: 1342 GAFIVIDGSKNISGLCHRSEMAENRVEDARTLYEEGDAVKAKILKIDRKQ 1391



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 154/370 (41%), Gaps = 33/370 (8%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            + +  G    G V  V +  L I L   +RG  R  DA D   D  + A+ +   P    
Sbjct: 1055 EQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASD---DLSLLADVEKHYP---- 1107

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            VG  +   V  +D DK         L L        L  E V  GM+L   V  + +   
Sbjct: 1108 VGSAMKVHVSAVDADKGR-------LDLSAKQRSDKLVFEDVSVGMILPGRVTKVTERQV 1160

Query: 124  ILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV 178
            I+     S  G +   ++A++      P +     +L+  V +ID+  K + LS  P  V
Sbjct: 1161 IMQLS-KSIVGAVDLIDMADDY-TKANPTVCQKNEVLRACVIAIDKANKKISLSLRPSKV 1218

Query: 179  --SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 236
              S    +D +  SI  L    +V   V+ + +NG+ ++     T  V I  L +++   
Sbjct: 1219 LSSSLPVQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGRDVTAYVRISDLSDSY-LK 1277

Query: 237  NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVV 292
             WK+ +   + V  R+   D     + ++L   +L  + +AP +   +K G +    KV 
Sbjct: 1278 EWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVV-TGKVR 1336

Query: 293  RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGL 351
            +V+     ++   S  +S   +   S++AE  V      Y+EG  V+ +IL   R  E +
Sbjct: 1337 KVEEFGAFIVIDGSKNISGLCHR--SEMAENRVEDARTLYEEGDAVKAKILKIDRKQEKI 1394

Query: 352  ATGILKASAF 361
            + G LKAS F
Sbjct: 1395 SFG-LKASYF 1403


>gi|260950407|ref|XP_002619500.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720]
 gi|238847072|gb|EEQ36536.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720]
          Length = 1677

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 386/1497 (25%), Positives = 692/1497 (46%), Gaps = 177/1497 (11%)

Query: 371  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
            V PG +V   +  +   G   +  G V A   LPH+ E+ + K    F +G+ +  R++G
Sbjct: 292  VHPGTLVNAIIAELSDDGVAARLFGMVDASFTLPHVEEYALEKLKNSFGIGSTVRARIIG 351

Query: 431  VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI--TKIEKHGC---FVRFYNGVQ 485
               +  T     +   + LA+      +       G+I  + IE  G    F+    G  
Sbjct: 352  TLLQNGTKKFILSRATAPLALQPELDSSALEAFPVGFIFDSGIEVVGADSDFIYLSTGSH 411

Query: 486  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN--LSFMMKPTR-----VSE 538
              A   +  +DP  +P+  Y VG     R++       RI+  L   + P       VS 
Sbjct: 412  -MAQVHKSQVDPELDPNMNYPVGSKHNARVL----GYNRIDNLLVVTLNPKLIASKFVSA 466

Query: 539  DDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
            DD V +G  +  V +  +   A  + V   G  +  +P  H++D          ++ P  
Sbjct: 467  DD-VPVGEYIPAVEIIKILDEAKGMIVKIFGDFEALVPANHMSDI--------KLVYPER 517

Query: 598  EFD-----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY-----VCNI 647
            +F      +  VL      L ++ + SL+N    +  DA      +VV G+     V   
Sbjct: 518  KFKVGGKVKGRVLYKNGKKLFVTLRKSLVN----MEDDAIVSDIENVVVGFKTTAIVDRF 573

Query: 648  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            +  G  V F G+L  + P+S+  +    +      +GQ+V   IL VN+E  +I+++L+Q
Sbjct: 574  VPGGALVTFFGKLRAYLPKSEISETFVEEAKDYLKLGQAVTVRILSVNAEENKISVTLRQ 633

Query: 708  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVV 766
            S                         ++ +  +++ +E   IG +++E  + E     V+
Sbjct: 634  S-------------------------TELSNKQIEHLESISIGRTLVEANIVEKTKEAVI 668

Query: 767  VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV---DLSLKTVFIDRFRE 823
            +  E  S++ G I+ + L+    E   +I   +      E LV   D+  +TV     + 
Sbjct: 669  IELE-GSNLRGVISTNHLSDGNYEENRIIYKNLEIGGSIEVLVLEKDIRARTVIASAKKS 727

Query: 824  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 883
              +  + +      E   D+ V   V   ++ V    L +S       +  A  +  +  
Sbjct: 728  LITAARTETLPVHYE---DIHVGSMVPGYIKSVTNLGLFVSFGGRLTGLVLAKNATNDPT 784

Query: 884  KFPQKQFLNGQSVIATV-----------MALPSSSTAGRLLLLLKAISETETSSSKRAKK 932
            +    +F   QSV+  V           ++L SS +AG         S+       + K 
Sbjct: 785  EDLSSKFYKNQSVVCDVIKTDDDNKRFLLSLTSSDSAGAF-----ESSKLSNPVDAQMKS 839

Query: 933  KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQ 990
            K+ Y VG      I  I+P  L+++      GR+   +      ++ +  N  ++F +G+
Sbjct: 840  KTDYAVGVSTFGVIDSIEPGYLKIRLADNLEGRVEANQCIRSWKSIKDPKNPLASFTVGE 899

Query: 991  TVTARIIAKSNKPDMK-KSFLWELSIKPSM---LTVS--EIGSKLLFEE---CDVSIGQR 1041
             V  +++      D K  SF    + K +    LT +  ++ SK  ++     D+++G  
Sbjct: 900  KVPVKVLGTY---DYKWHSFTTAAAFKKTTVLSLTTAKDQLKSKSPYKPDQLSDITVGSE 956

Query: 1042 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1101
               Y+ +  N  A ++++  +K ++ + + + + S+  +F   F +G A+  +V+ I+ E
Sbjct: 957  YVVYIERFHNGTAKVSLTPSIKGEISVYNLSDDMSKYSKFDESFPLGTALKANVIGIDFE 1016

Query: 1102 KKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPH 1159
              +++L  R                N+ +F  +  GD    ++ K+      ++V++ P 
Sbjct: 1017 HGMVKLSAR--------------KQNLTSFTQLKVGDQYPAKVFKVTKSF--VLVELAPG 1060

Query: 1160 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1219
            L G  + T                   D L  YD         L++  T      V +++
Sbjct: 1061 LVGYSYIT-------------------DALDDYD---------LKLEETYHINQPVAVTI 1092

Query: 1220 RSSLD--GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
              +L+  G  S +  +  T  D P   +  I +L    +V+G++K + + G ++ L R L
Sbjct: 1093 TETLENEGKFSVSLRNEKTAKDKP---VNSISELHRGDVVKGFIKAINNAGLYVSLGRDL 1149

Query: 1278 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1337
             A V +SN+SD ++   +K F   + + G+++  + +  R+ +TLK S+      ++   
Sbjct: 1150 FALVPVSNISDAFLVDWKKFFKPFQSIVGKIVQCK-VEGRITMTLKESE-LNGHLADYKT 1207

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
               L +G+I  G +K+V  YG+F+ ++ T + GLCH SE++++ V+N   ++  G++VKV
Sbjct: 1208 FDELEIGEIYDGTVKKVADYGVFVKLDGTAVDGLCHRSEIADNQVENAAALFAEGDRVKV 1267

Query: 1398 KILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQ 1457
            KILK+ K+K+++SLGMK+SYF    +N   S + E  EA ++      +S  E  +    
Sbjct: 1268 KILKIFKDKKQLSLGMKASYFTEADEN---SDDVEMAEASDDDDEEEVNSEDEVMAEGFS 1324

Query: 1458 DMDMESEDGGSLVLAQIESRASVPP----LEVNLDDEQPDMDNGISQNQGHTDEAKTIDE 1513
            D D  S+       +  E   + P     L  N  D    + +    N+  +DE +   E
Sbjct: 1325 DNDQSSDSEDEEEESAKEGTDAAPTGLSGLSTNGFDWTASILDQAEDNESSSDEDEDFTE 1384

Query: 1514 KNNRHAKKKEK--EEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM 1571
             + +  +K +K  E++  EI A         AP +  +FER++  +P+SS +W+ YM+F 
Sbjct: 1385 SHKKRKRKGKKNVEDKTSEINAR--------APESVQDFERMIIGNPDSSVLWMNYMSFQ 1436

Query: 1572 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1631
            L + +++K+R IAERAL+TIN REE EK+NIW+A  NLEN +G+  EE++   F+RA+Q+
Sbjct: 1437 LQLGEIDKSREIAERALKTINYREEQEKMNIWIAILNLENTFGS--EESLDAAFKRAVQH 1494

Query: 1632 CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAV 1690
             D   +H  L+G+Y+ +E+   ADEL   M KKF  +  VW+     L+ ++  +    +
Sbjct: 1495 MDSLTMHQKLIGIYQLSEKFDKADELYRVMTKKFAKNVNVWVSFGSSLMDRKLFDDAHEL 1554

Query: 1691 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1750
            + RAL SLP+  HI  + + A LEF  G  ++GRS+FEG++++ PKR DLW++Y+DQEI+
Sbjct: 1555 LARALQSLPKSSHIDVVRKFAQLEFAKGDPEQGRSLFEGLVTDAPKRIDLWNVYIDQEIK 1614

Query: 1751 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             GD + I  LFER ++  L  K+ KF F K+L YE+  G E+    VK  A+EYV+S
Sbjct: 1615 QGDREKIVSLFERVVTKKLSRKQAKFFFSKWLGYEEEHGSEQSASRVKALAVEYVQS 1671



 Score =  177 bits (448), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 204/754 (27%), Positives = 337/754 (44%), Gaps = 66/754 (8%)

Query: 1   MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRG--------------LARAADALDPIL 46
           M  +N+  G ++ G +  V++ DLV+ +   L G              L +   A+D   
Sbjct: 85  MTLKNLIPGCEVLGQIVRVDKMDLVLAITDNLVGRVPITAIGAEVSAMLEKYEAAMDSSD 144

Query: 47  DNEIE-----ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS 101
           + + E     A E   L ++F  GQ +  IV    +     G+R + LS+  S +   + 
Sbjct: 145 EEDDEPTQSFAPEFPKLASLFEPGQWLRAIVTPTPE-----GQRGLHLSIAPSDVNASME 199

Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL--AENSGIDVKPGLLLQGVV 159
            +    G ++ A VKSIEDHG +L+ G+   +GFL +  L  A+        G ++   V
Sbjct: 200 SDDFTPGNIVQASVKSIEDHGVVLNLGVGKLSGFLSKKELKKADIPLSSFTVGKVILTSV 259

Query: 160 RSIDRTRKVVYLSSDPDTVS-KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
            S D  R V    ++ + VS K V   +   SID + PG +V+  +  + ++GV      
Sbjct: 260 ASAD-ARTVSLRPAEKENVSKKTVVTTIS--SIDAVHPGTLVNAIIAELSDDGVAARLFG 316

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI---LFVDPT-----SRAVG-LTLNPY 269
               +  + H++  +     KN +     V ARI   L  + T     SRA   L L P 
Sbjct: 317 MVDASFTLPHVEE-YALEKLKNSFGIGSTVRARIIGTLLQNGTKKFILSRATAPLALQPE 375

Query: 270 LLHNRAPPSHVKVGDIYDQS-KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
           L  + +      VG I+D   +VV  D     L     +  S  A V  S V  E    +
Sbjct: 376 L--DSSALEAFPVGFIFDSGIEVVGADSDFIYL-----STGSHMAQVHKSQVDPELDPNM 428

Query: 329 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--D 385
              Y  GS    R+LG+  ++ L    L          +  DV  G  +   ++I +  +
Sbjct: 429 --NYPVGSKHNARVLGYNRIDNLLVVTLNPKLIASKFVSADDVPVGEYIPAVEIIKILDE 486

Query: 386 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLV 445
           + G IV+  G  +AL P  HMS+ ++V P +KFKVG ++  RVL    K++ VT +K+LV
Sbjct: 487 AKGMIVKIFGDFEALVPANHMSDIKLVYPERKFKVGGKVKGRVLYKNGKKLFVTLRKSLV 546

Query: 446 KSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 504
             +  AI+S          T   + +    G  V F+  ++ + P+SE+      E    
Sbjct: 547 NMEDDAIVSDIENVVVGFKTTAIVDRFVPGGALVTFFGKLRAYLPKSEISETFVEEAKDY 606

Query: 505 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG----VVDVVTPNAV 560
             +GQ V  RI+S      +I+++ + + T +S   +  L S+  G      ++V     
Sbjct: 607 LKLGQAVTVRILSVNAEENKISVT-LRQSTELSNKQIEHLESISIGRTLVEANIVEKTKE 665

Query: 561 VVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSA 616
            V +  +G + +G I T HL+D + E   ++   ++ G    ++LVL+ +  +  ++ SA
Sbjct: 666 AVIIELEGSNLRGVISTNHLSDGNYEENRIIYKNLEIGGSI-EVLVLEKDIRARTVIASA 724

Query: 617 KYSLINSA--QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 674
           K SLI +A  + LP     IH  S+V GY+ ++   G FV F GRLTG      A +   
Sbjct: 725 KKSLITAARTETLPVHYEDIHVGSMVPGYIKSVTNLGLFVSFGGRLTGLVLAKNATNDPT 784

Query: 675 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            DLS  +Y  QSV  +++  + +  R  LSL  S
Sbjct: 785 EDLSSKFYKNQSVVCDVIKTDDDNKRFLLSLTSS 818



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 109/495 (22%), Positives = 210/495 (42%), Gaps = 83/495 (16%)

Query: 939  GSLVQAEITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNVVENLFSNFKIGQTV-TARI 996
            G++VQA +  I+   + L  G+G   G +   E+   K+++     S+F +G+ + T+  
Sbjct: 206  GNIVQASVKSIEDHGVVLNLGVGKLSGFLSKKELK--KADIP---LSSFTVGKVILTSVA 260

Query: 997  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1056
             A +    ++ +    +S K  + T+S I +        V  G  V   + ++ ++    
Sbjct: 261  SADARTVSLRPAEKENVSKKTVVTTISSIDA--------VHPGTLVNAIIAELSDD---- 308

Query: 1057 TISRHLKAQLF-ILDSAY-----EPSELQEFQRRFHIGKAVTGHVLSI---NKEKKLL-- 1105
                 + A+LF ++D+++     E   L++ +  F IG  V   ++     N  KK +  
Sbjct: 309  ----GVAARLFGMVDASFTLPHVEEYALEKLKNSFGIGSTVRARIIGTLLQNGTKKFILS 364

Query: 1106 ----RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1161
                 L L+P          ++ +  ++ F   G I    I  + +    + +  G H+ 
Sbjct: 365  RATAPLALQP----------ELDSSALEAF-PVGFIFDSGIEVVGADSDFIYLSTGSHM- 412

Query: 1162 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1221
             +VH +++      DP       + DP   Y  G     +VL  +R       + ++L  
Sbjct: 413  AQVHKSQV------DP-------ELDPNMNYPVGSKHNARVLGYNRIDN---LLVVTLNP 456

Query: 1222 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1281
             L      ++ D+      P   + KI D +  MIV+ +       G F       +A V
Sbjct: 457  KLIASKFVSADDVPVGEYIPAVEIIKILDEAKGMIVKIF-------GDF-------EALV 502

Query: 1282 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1341
              +++SD  +  PE++F +G  V GRVL      K++ VTL+ S       + ++++ N+
Sbjct: 503  PANHMSDIKLVYPERKFKVGGKVKGRVLYKN--GKKLFVTLRKSLVNMEDDAIVSDIENV 560

Query: 1342 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1401
             VG      + R    G  +T     L      SE+SE  V+  +   + G+ V V+IL 
Sbjct: 561  VVGFKTTAIVDRFVPGGALVTFFG-KLRAYLPKSEISETFVEEAKDYLKLGQAVTVRILS 619

Query: 1402 VDKEKRRISLGMKSS 1416
            V+ E+ +IS+ ++ S
Sbjct: 620  VNAEENKISVTLRQS 634


>gi|406867357|gb|EKD20395.1| rRNA biogenesis protein RRP5 [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1789

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 276/896 (30%), Positives = 486/896 (54%), Gaps = 83/896 (9%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 996
            G L +A+I+ +K  ++ ++      GRI ++++ D   ++ +      +F   Q +  R+
Sbjct: 932  GRLTKAKISSVKETQINVQLADNIQGRIDVSQIFDSFDDIKDRKRPVRSFSPKQILNVRV 991

Query: 997  IAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1047
            +   +  + +         K+ ++ELS KPS     +    L  ++  V +G     YV 
Sbjct: 992  LGIHDAKNHRFLPISHRSGKTMVFELSAKPSDQN-DDPKEPLALDK--VKVGSSWVAYVN 1048

Query: 1048 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1107
             +  E+  + +S +++ ++  L+ + + S+L+  +  F IG A+  HV  ++     L L
Sbjct: 1049 NIKEEYVWVNLSPNVRGRIPALELSEDVSKLKNLETHFPIGSAIKVHVKHVDAGNNRLDL 1108

Query: 1108 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1167
                 Q   S   + + +      + +G +V G+++K  S    ++VQ+  +L   V+ T
Sbjct: 1109 SALSSQ---SSGPITLKS------LSKGMVVTGKVTK--STERHIMVQLSDNLSAPVNLT 1157

Query: 1168 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1227
            +L +          D  + DP + Y +G+ V+  V+++    +    + LS R S     
Sbjct: 1158 DLAD----------DYSEADP-TKYSKGEIVRVCVVDVDLPNK---KIRLSTRPS----- 1198

Query: 1228 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1287
                  LS+ ++     + +I  L PN IV+G++KN+T  G FI L  K+DA V +++LS
Sbjct: 1199 ----RVLSSSLEVKDPEISEISQLKPNDIVRGFIKNITEAGLFINLGGKVDALVKVADLS 1254

Query: 1288 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV 1347
            D +++  + E+ + +LV G+V+ ++     V+++LK S +         + ++L  G IV
Sbjct: 1255 DSFIKDWQSEYEVDQLVKGKVIGIDKSRGNVQMSLKAS-ALDKDYVLPMSFADLRPGQIV 1313

Query: 1348 IGQIKRVESYGLFITIENTN-LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1406
             G+I++VE +G FI I+ TN L GLCH +++++  VD+++++Y+AG++VK KI+ +D EK
Sbjct: 1314 TGKIRKVEEFGAFIVIDGTNNLSGLCHRTQMADKRVDDVKSLYQAGDQVKAKIVFLDAEK 1373

Query: 1407 RRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESED- 1465
            R+ISLG+K+SYF+++A +   S  E+ D  +E +     SS  E+      D+D+ES D 
Sbjct: 1374 RQISLGLKASYFEDNAGSGDNSDGEDLD-GVEGIEIGGDSSGDEDGQDGGIDLDVESIDS 1432

Query: 1466 ----GGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHA-- 1519
                GG       ES   +P       D Q D D       G    A  +DE++N  +  
Sbjct: 1433 NEGQGGG------ESDLEMP-------DAQDDTDAPALSAGGFDWSANVLDEQSNAGSDN 1479

Query: 1520 ----KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1575
                +K +K+ R+ EI       L+ + P++  +FERL+   P+SS +WI+YMAF + ++
Sbjct: 1480 EGADEKPKKKRRKAEITVDRTGDLDVNGPQSVSDFERLLLGQPDSSTLWIQYMAFQMQLS 1539

Query: 1576 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
            ++ KAR +AERA++TINIREE EK+N+W+A  NLEN YG+  +E V +VF+RA QY D +
Sbjct: 1540 ELSKAREVAERAIKTINIREETEKMNVWIALLNLENAYGS--DETVEEVFKRACQYNDAQ 1597

Query: 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQR 1693
            +++  L  +Y ++ ++  AD+L   ++KKF  S  VW      L       +  +A++ R
Sbjct: 1598 EIYERLTSIYIQSGKHSKADDLFQVLVKKFSQSPNVWANYAHFLHSTLSSPDRARALLSR 1657

Query: 1694 ALLSLPRHKHIKFISQTAILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1751
            A  SLP H H+    + A LEF  K G  +RGR+MFE +L+ +PKR D+W+  LD EI+ 
Sbjct: 1658 AKQSLPSHTHVAITLKFAALEFHSKVGSPERGRTMFEALLTTFPKRLDIWNQLLDLEIQQ 1717

Query: 1752 GDVDLIRGLFERAISL--SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
             D D+IRG+FER +    +L PK+    F+++ E+E+  G+++  E V  K  E+V
Sbjct: 1718 NDKDIIRGVFERMVKTNKALKPKQAVAWFRRWSEWEEGNGDKKSKEKVLAKTQEWV 1773



 Score =  189 bits (481), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 296/1267 (23%), Positives = 541/1267 (42%), Gaps = 141/1267 (11%)

Query: 6    ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA-------NEDNL- 57
            I  G  + G V+++N+ D+ + LP  L G        D I +  IEA       +ED   
Sbjct: 146  IVPGSLVLGQVSQINDLDVALSLPNNLTGYVPITSISDKITE-RIEAIAAQEGEDEDETD 204

Query: 58   -----LPTIFHVGQLVSCIVLQLDDDKK--EIGKRKIWLSLRLSLLYKGLSLETVQEGMV 110
                 L  +F +GQ +   V+   DD+      KR I LSLR       ++++ V     
Sbjct: 205  LKDVNLKKLFSIGQYLRAYVVSTKDDEAAGSKAKRHIELSLRPQQSNANIAVQNVVTNNT 264

Query: 111  LTAYVKSIEDHGYILHFGLPSF--TGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRK 167
            L A V S+EDHG I+  GLP     GF+  N +     +  ++ G +    +  ++ + K
Sbjct: 265  LMASVASVEDHGLIMDLGLPELGVKGFMSSNEVGYGVALSSIEEGAVFLCTILGLNSSGK 324

Query: 168  VVYLSSDPDTVSKCVTKDLKGIS----IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGT 223
             V LS DP  ++   +K+ K +S    ID  +PG  V   V  I   G+    +     T
Sbjct: 325  TVKLSVDPQKIAN--SKNPKYLSDAPTIDAFLPGTAVEILVSEITLRGISGKVMGSLDVT 382

Query: 224  VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLHN-------- 273
             D+ H        + +  Y    KV  R++   P S+   +G++L  ++L          
Sbjct: 383  ADLMHSGAGASGKDLEKKYKIGSKVKGRLICTFPNSQPAKLGVSLLDHVLSLSSLQGLLN 442

Query: 274  ---RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
               + P   + +    ++ KV +V+ G+GL +D+    V+   +V IS V + ++  L +
Sbjct: 443  SELKNPLDILPLSSFVEEVKVKKVEPGMGLFVDVGVKGVA--GFVHISRVKDGKIETLAE 500

Query: 331  K---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVD 385
                +K GS  R R++G+  L+GL    L+ S          D+  G VVKGKV  I V+
Sbjct: 501  TSGPFKTGSVHRGRLIGYNALDGLYIVSLEPSILAQPFLRVEDLSIGEVVKGKVEKIVVN 560

Query: 386  SFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTH 440
              G    +V    G+  L P  HM++  +++P KKFK G+ ++ RVL      ++I +T 
Sbjct: 561  ERGVGGLLVNLADGISGLVPEAHMADVHLLRPEKKFKEGSTVMARVLSTDPGKRQIRLTL 620

Query: 441  KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
            KKTLV S  A+  SY +    + + G I  I   G  V+FY  ++GF P +E+      +
Sbjct: 621  KKTLVNSDAALFVSYDDIKVGMQSPGTIVNILSTGAVVQFYGTIRGFLPVAEMSEAYIQD 680

Query: 501  PSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDV 554
            PS  + VGQVV   ++   P ++++ +S      F +      +   +KLG +VS VV  
Sbjct: 681  PSQHFLVGQVVNVHVVKVDPEAKKLIVSCKDPAAFGLAQQAAFKK--LKLGEVVSAVVTE 738

Query: 555  VTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSN- 611
             + + + + +      + T+P   L D    ++A+ +K  I+ G     L+VL    +  
Sbjct: 739  KSNDNISLDLHG---IRATLPIGQLTDGSSQKNASALKK-IRVGQTLTDLVVLGKYENKR 794

Query: 612  -LLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
             ++L+ K +L+  A+   L      +  + VVHG+V NI  T  FV+F G LTG  P+ K
Sbjct: 795  LIILTNKPNLVKDAKAKLLLRSFEDVKEDKVVHGFVKNITLTAVFVQFAGGLTGLLPKVK 854

Query: 669  AVDGQ--------------RADLSKTYYVGQSVRSNILD------VNSETGRITLSLKQS 708
              +                +  +++  +  +  + +++D      V  ET   + S+ Q 
Sbjct: 855  LPEAAIRLPDFGMKKFQTLQVKITRVDHGQRQFQLSMVDAASKERVEPETPVSSGSINQE 914

Query: 709  CCSSTDASF-----MQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 763
              +  D +      + +  L + KI+ ++ ++ N           +   I+G++  S  F
Sbjct: 915  AVNPIDTTLTCLDDLTQGRLTKAKISSVKETQIN---------VQLADNIQGRIDVSQIF 965

Query: 764  GVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRF 821
                      D +  I   +    +     ++   +L +  AK  R + +S ++     F
Sbjct: 966  ----------DSFDDIKDRKRPVRSFSPKQILNVRVLGIHDAKNHRFLPISHRSGKTMVF 1015

Query: 822  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-D 879
              +          ++  A   + V  +  A V  +KE Y+ ++L P     I    +S D
Sbjct: 1016 ELSAKPSDQNDDPKEPLALDKVKVGSSWVAYVNNIKEEYVWVNLSPNVRGRIPALELSED 1075

Query: 880  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 939
             +  K  +  F  G ++   V  +     AG   L L A+S    S S       S   G
Sbjct: 1076 VSKLKNLETHFPIGSAIKVHVKHV----DAGNNRLDLSALS----SQSSGPITLKSLSKG 1127

Query: 940  SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK 999
             +V  ++T+     + ++        +++T++ DD S      +S  +I +     +   
Sbjct: 1128 MVVTGKVTKSTERHIMVQLSDNLSAPVNLTDLADDYSEADPTKYSKGEIVRVCVVDV--- 1184

Query: 1000 SNKPDMKKSFLWELSIKPSMLTVS--EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1057
             + P+ K      LS +PS +  S  E+    + E   +     V G++  +      + 
Sbjct: 1185 -DLPNKK----IRLSTRPSRVLSSSLEVKDPEISEISQLKPNDIVRGFIKNITEAGLFIN 1239

Query: 1058 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS 1117
            +   + A + + D     S ++++Q  + + + V G V+ I+K +  +++ L+       
Sbjct: 1240 LGGKVDALVKVAD--LSDSFIKDWQSEYEVDQLVKGKVIGIDKSRGNVQMSLKASALD-K 1296

Query: 1118 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP 1177
            D  + +S  +++     G IV G+I K+      +V+    +L G  H T++ +  V D 
Sbjct: 1297 DYVLPMSFADLRP----GQIVTGKIRKVEEFGAFIVIDGTNNLSGLCHRTQMADKRVDDV 1352

Query: 1178 LSGYDEG 1184
             S Y  G
Sbjct: 1353 KSLYQAG 1359



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 105/489 (21%), Positives = 201/489 (41%), Gaps = 69/489 (14%)

Query: 370  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVGAEL 424
            D+  G + K K+ +V      VQ    ++    +  +   F+ +K    P + F     L
Sbjct: 928  DLTQGRLTKAKISSVKETQINVQLADNIQGRIDVSQIFDSFDDIKDRKRPVRSFSPKQIL 987

Query: 425  VFRVLGVKSKR----ITVTHK--KTLVKSKLAILSSYAE------ATDRL-ITHGWIT-- 469
              RVLG+   +    + ++H+  KT+V    A  S   +      A D++ +   W+   
Sbjct: 988  NVRVLGIHDAKNHRFLPISHRSGKTMVFELSAKPSDQNDDPKEPLALDKVKVGSSWVAYV 1047

Query: 470  -KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH--VGQVVKCRIMSSIPASRRIN 526
              I++   +V     V+G  P  EL  D     +   H  +G  +K  +      + R++
Sbjct: 1048 NNIKEEYVWVNLSPNVRGRIPALELSEDVSKLKNLETHFPIGSAIKVHVKHVDAGNNRLD 1107

Query: 527  LSFMMKPTR--VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 584
            LS +   +   ++   L K G +V+G V   T   ++V  ++   S   +    LAD   
Sbjct: 1108 LSALSSQSSGPITLKSLSK-GMVVTGKVTKSTERHIMVQ-LSDNLS-APVNLTDLADDYS 1164

Query: 585  HATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQ---QLP--SDASHIHPN 637
             A   K       E  ++ V+D +  N  + LS + S + S+    + P  S+ S + PN
Sbjct: 1165 EADPTKY---SKGEIVRVCVVDVDLPNKKIRLSTRPSRVLSSSLEVKDPEISEISQLKPN 1221

Query: 638  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
             +V G++ NI E G F+   G++      +   D    D    Y V Q V+  ++ ++  
Sbjct: 1222 DIVRGFIKNITEAGLFINLGGKVDALVKVADLSDSFIKDWQSEYEVDQLVKGKVIGIDKS 1281

Query: 698  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             G + +SLK        AS + + ++L    A L+                 G ++ GK+
Sbjct: 1282 RGNVQMSLK--------ASALDKDYVLPMSFADLRP----------------GQIVTGKI 1317

Query: 758  HESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVD 810
             +  +FG  +  +  +++ G     Q+A   V       ++G  ++A I+ +   +R + 
Sbjct: 1318 RKVEEFGAFIVIDGTNNLSGLCHRTQMADKRVDDVKSLYQAGDQVKAKIVFLDAEKRQIS 1377

Query: 811  LSLKTVFID 819
            L LK  + +
Sbjct: 1378 LGLKASYFE 1386



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 156/353 (44%), Gaps = 42/353 (11%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE------NSGIDVKPGL 153
            L+L+ V+ G    AYV +I++  Y+     P+  G +P   L+E      N       G 
Sbjct: 1032 LALDKVKVGSSWVAYVNNIKEE-YVWVNLSPNVRGRIPALELSEDVSKLKNLETHFPIGS 1090

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
             ++  V+ +D     + LS+     S  +T  LK +S      GM+V+ +V    E  +M
Sbjct: 1091 AIKVHVKHVDAGNNRLDLSALSSQSSGPIT--LKSLS-----KGMVVTGKVTKSTERHIM 1143

Query: 214  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 273
            +      +  V++  L + +   +    Y++ + V   ++ VD  ++ + L+  P    +
Sbjct: 1144 VQLSDNLSAPVNLTDLADDYSEAD-PTKYSKGEIVRVCVVDVDLPNKKIRLSTRP----S 1198

Query: 274  RAPPSHVKVGDI----YDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAE 322
            R   S ++V D       Q K   + RG        GL +++        A V ++D+++
Sbjct: 1199 RVLSSSLEVKDPEISEISQLKPNDIVRGFIKNITEAGLFINLGG---KVDALVKVADLSD 1255

Query: 323  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKG 379
              ++  + +Y+    V+ +++G     G     LKASA +    L  + +D++PG +V G
Sbjct: 1256 SFIKDWQSEYEVDQLVKGKVIGIDKSRGNVQMSLKASALDKDYVLPMSFADLRPGQIVTG 1315

Query: 380  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVG----AELVF 426
            K+  V+ FGA +   G   +  LC    M++  +      ++ G    A++VF
Sbjct: 1316 KIRKVEEFGAFIVIDGTNNLSGLCHRTQMADKRVDDVKSLYQAGDQVKAKIVF 1368



 Score = 47.0 bits (110), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 158/408 (38%), Gaps = 96/408 (23%)

Query: 961  GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1020
            G  G +HI+ V D K   +      FK G     R+I   N  D     L+ +S++PS+L
Sbjct: 480  GVAGFVHISRVKDGKIETLAETSGPFKTGSVHRGRLIG-YNALDG----LYIVSLEPSIL 534

Query: 1021 TVSEIGSKLLFEECDVSIGQRVTGYVYK-VDNEWALLTISRHLKAQL--FILDSAYEPSE 1077
                  ++      D+SIG+ V G V K V NE  +  +  +L   +   + ++      
Sbjct: 535  ------AQPFLRVEDLSIGEVVKGKVEKIVVNERGVGGLLVNLADGISGLVPEAHMADVH 588

Query: 1078 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1137
            L   +++F  G  V   VLS +  K+ +RL L+        KT  + N +   F+   DI
Sbjct: 589  LLRPEKKFKEGSTVMARVLSTDPGKRQIRLTLK--------KT--LVNSDAALFVSYDDI 638

Query: 1138 -VG----GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY--------DEG 1184
             VG    G I  ILS   G VVQ    + G +   E+    + DP   +           
Sbjct: 639  KVGMQSPGTIVNILS--TGAVVQFYGTIRGFLPVAEMSEAYIQDPSQHFLVGQVVNVHVV 696

Query: 1185 QFDP------LSGYD--------EGQFVKCKVLEISRTV---RGTFHVELSL---RSSL- 1223
            + DP      +S  D        +  F K K+ E+   V   +   ++ L L   R++L 
Sbjct: 697  KVDPEAKKLIVSCKDPAAFGLAQQAAFKKLKLGEVVSAVVTEKSNDNISLDLHGIRATLP 756

Query: 1224 -----DGMSSTNSSDLS--------TDVDTPGKH-----------------------LEK 1247
                 DG S  N+S L         TD+   GK+                       L  
Sbjct: 757  IGQLTDGSSQKNASALKKIRVGQTLTDLVVLGKYENKRLIILTNKPNLVKDAKAKLLLRS 816

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
             ED+  + +V G+VKN+T    F+  +  L   +    L +  +  P+
Sbjct: 817  FEDVKEDKVVHGFVKNITLTAVFVQFAGGLTGLLPKVKLPEAAIRLPD 864



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 167/802 (20%), Positives = 321/802 (40%), Gaps = 129/802 (16%)

Query: 660  LTGFAPRSKAVDGQRADLSKT---YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
            + GF   S+  DG+   L++T   +  G   R  ++  N+  G   +SL        + S
Sbjct: 481  VAGFVHISRVKDGKIETLAETSGPFKTGSVHRGRLIGYNALDGLYIVSL--------EPS 532

Query: 717  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV-----HESNDFGVVVSFEE 771
             + + FL                    VE   IG V++GKV     +E    G++V+  +
Sbjct: 533  ILAQPFLR-------------------VEDLSIGEVVKGKVEKIVVNERGVGGLLVNLAD 573

Query: 772  HSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 824
               + G +    +A   +       + GS + A +L     +R + L+LK   +      
Sbjct: 574  G--ISGLVPEAHMADVHLLRPEKKFKEGSTVMARVLSTDPGKRQIRLTLKKTLV------ 625

Query: 825  NSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 883
            NS+           +  D+ V  Q+   IV I+    +V         +  A +S+   Q
Sbjct: 626  NSDAAL------FVSYDDIKVGMQSPGTIVNILSTGAVVQFYGTIRGFLPVAEMSEAYIQ 679

Query: 884  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK---AISETETSSSKRAKKKSSYDVGS 940
              P + FL GQ V   V+       A +L++  K   A    + ++ K+ K      +G 
Sbjct: 680  D-PSQHFLVGQVVNVHVVK--VDPEAKKLIVSCKDPAAFGLAQQAAFKKLK------LGE 730

Query: 941  LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT------- 993
            +V A +TE     + L    G    + I ++ D  S    +     ++GQT+T       
Sbjct: 731  VVSAVVTEKSNDNISLDLH-GIRATLPIGQLTDGSSQKNASALKKIRVGQTLTDLVVLGK 789

Query: 994  ---ARIIAKSNKPDMKKSFLWELSIKPSMLTVSE------IGSKLLFEECDVSIGQRVTG 1044
                R+I  +NKP++ K    +L ++ S   V E          +      V     +TG
Sbjct: 790  YENKRLIILTNKPNLVKDAKAKLLLR-SFEDVKEDKVVHGFVKNITLTAVFVQFAGGLTG 848

Query: 1045 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1104
             + KV    A + +      +   L    + + +   QR+F +          +  E   
Sbjct: 849  LLPKVKLPEAAIRLPDFGMKKFQTLQ--VKITRVDHGQRQFQLSMVDAASKERVEPET-- 904

Query: 1105 LRLVLRPFQDG-ISDKTVDISNDNMQTFIHEGDIVGGRISKI-LSGV--GGLVVQIGPHL 1160
                  P   G I+ + V+  +  +       D+  GR++K  +S V    + VQ+  ++
Sbjct: 905  ------PVSSGSINQEAVNPIDTTLTCL---DDLTQGRLTKAKISSVKETQINVQLADNI 955

Query: 1161 YGRVHFTELKNICVSDPLSGYDE--GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
             GR+  +++           +D+   +  P+  +   Q +  +VL I       F + +S
Sbjct: 956  QGRIDVSQI--------FDSFDDIKDRKRPVRSFSPKQILNVRVLGIHDAKNHRF-LPIS 1006

Query: 1219 LRS--SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1276
             RS  ++    S   SD + D   P   L+K++  S  +    YV N+  +  ++ LS  
Sbjct: 1007 HRSGKTMVFELSAKPSDQNDDPKEP-LALDKVKVGSSWV---AYVNNIKEEYVWVNLSPN 1062

Query: 1277 LDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
            +  ++    LS+    +++ E  FPIG  +   V  V+  + R++++  +S S     S 
Sbjct: 1063 VRGRIPALELSEDVSKLKNLETHFPIGSAIKVHVKHVDAGNNRLDLSALSSQS-----SG 1117

Query: 1335 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1394
               L +L  G +V G++ +     + + + + NL    ++++L++D+ +   T Y  GE 
Sbjct: 1118 PITLKSLSKGMVVTGKVTKSTERHIMVQLSD-NLSAPVNLTDLADDYSEADPTKYSKGEI 1176

Query: 1395 VKVKILKVDKEKRRISLGMKSS 1416
            V+V ++ VD   ++I L  + S
Sbjct: 1177 VRVCVVDVDLPNKKIRLSTRPS 1198


>gi|302505220|ref|XP_003014831.1| hypothetical protein ARB_07392 [Arthroderma benhamiae CBS 112371]
 gi|291178137|gb|EFE33928.1| hypothetical protein ARB_07392 [Arthroderma benhamiae CBS 112371]
          Length = 1820

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 388/1412 (27%), Positives = 665/1412 (47%), Gaps = 187/1412 (13%)

Query: 485  QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 541
            QGF   S L    +D        Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 502  QGFVHLSRLADGRVDSISSIEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 558

Query: 542  VKL-----GSLVSGVVD--VVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSV 592
             +L     GS+V G ++  ++ P  +   +++   S  G +P  H+AD  L+H    +  
Sbjct: 559  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMADTKLQHP---EKK 615

Query: 593  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 651
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 616  FREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 675

Query: 652  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 676  AIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNIHALTVDAENERLVVSCKDPSTV 735

Query: 712  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 771
            + D    Q  F                      E    G V+ G V E +   +++  ++
Sbjct: 736  TAD---YQSAF----------------------ENVHPGLVVSGTVFEKSSDDLLIKLQD 770

Query: 772  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 821
               +    + H   G++ +  S +             +  V K+ RL++++ K       
Sbjct: 771  SGLIARLTSDHISDGSSTKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATL---- 826

Query: 822  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 880
                  ++A  + R     +D+     V  IV+ I+ E   V  L      I    V D 
Sbjct: 827  ------KEAAAEGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDD 880

Query: 881  NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS------ETETSSSKRA---- 930
            +  + P   +   Q + ATV A+   S   R LL LK +S      ++ ++S K+A    
Sbjct: 881  HASR-PDFGYSRFQVISATVCAVQEDSD--RFLLSLKPVSKLKQQSDSSSASEKKAPAVV 937

Query: 931  ---------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 981
                     K      VG + +A+IT +K  +L +       GRI I+E+ D   ++ + 
Sbjct: 938  LNNPIDEELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDR 997

Query: 982  L--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1030
                 +F     +  R++   +  + K         K  ++ELS K S L  SE    L 
Sbjct: 998  KRPLKSFHSKAILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEF-KPLH 1056

Query: 1031 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1090
             E+  + +G R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A
Sbjct: 1057 LEQ--LKVGDRYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSA 1114

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
            +   V  I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI     
Sbjct: 1115 LQVAVTGIDVEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR-- 1163

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
             ++VQI  ++ G +   ++ +          D  + +P + + + + ++  V+++    +
Sbjct: 1164 QVLVQINDNVVGAISLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIPNK 1212

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
                +  S+R S           LS+ +      +  I++L    IV+G+V+ V + G F
Sbjct: 1213 ---KISFSVRPS---------KVLSSSLAVVDPEITSIDNLKVGQIVRGFVRRVDNIGVF 1260

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            + L   + A + +S+LSD +++  + EF + +LV GR+  V+  + +++++LK S +   
Sbjct: 1261 VTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKIQMSLKKS-ALDP 1319

Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1389
            +     NL +L +G IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y
Sbjct: 1320 NYKPPFNLKDLKIGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLY 1379

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD--EAIEEVGSYNRSS 1447
               + VK K+LKVD EK +I+LG+K+SYF++      +  EEESD   + +E G      
Sbjct: 1380 EKDDIVKAKVLKVDLEKGQIALGLKASYFRD------LPEEEESDANSSDDEAGGIK--- 1430

Query: 1448 LLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD-------MDNGIS- 1499
             L+  S +  D+ M    GG  +  + +        E    +  PD       + +G   
Sbjct: 1431 -LDVGSDSDDDVSM----GGVDLEGEDDKEEEEDSDEDIEMENAPDSTKKGGLVTSGFDW 1485

Query: 1500 QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1559
               G  D  +T DE        K K+ R+ EI+      L+ + P+T  ++ERL+   P+
Sbjct: 1486 TGDGDKDMNETADESTEDDGATKRKKRRKAEIQVDRTGDLDANGPQTVADYERLLLGEPD 1545

Query: 1560 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619
            SS +W+KYMAF L + +V+KAR IA+RAL+T++I ++ EKLN+WVA  NLEN +GN  ++
Sbjct: 1546 SSLLWLKYMAFQLELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLNLENTFGN--DD 1603

Query: 1620 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1679
             + +VF+ A +Y D  +++  ++ ++ ++ + + ADEL    +KK   S   +       
Sbjct: 1604 TLDEVFKSACEYNDAHEIYDRMISIFIQSGKAEKADELFQTALKKKVSSTPDFFLNYANF 1663

Query: 1680 LKQQQEGVQA---VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEY 1734
            L    E  Q    ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +
Sbjct: 1664 LFDTMEAPQRGRDLLPRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERGRTVFEGLLSSF 1723

Query: 1735 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLF 1778
            PKR DLW++ LD EI++GD + +R LFER + +                 L  K+ KFLF
Sbjct: 1724 PKRIDLWNVLLDLEIKVGDEEQVRRLFERVLGIGHGVVAADGTKGGPKKKLKEKQAKFLF 1783

Query: 1779 KKYLEYEKSV---GEEERIEYVKQKAMEYVES 1807
            KK+L +E+ +   G+   ++ VK +A +YV S
Sbjct: 1784 KKWLAFEEKIAPEGDTRMVDEVKARAADYVRS 1815



 Score =  208 bits (530), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 301/1286 (23%), Positives = 541/1286 (42%), Gaps = 143/1286 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA----------- 52
            + I+ G ++ G V+ +   D+ + LP  L G     +A+   L  ++EA           
Sbjct: 166  KRIAVGSRILGQVSSIGLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEE 224

Query: 53   --NEDNLLPTIFHVGQLVSCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQE 107
              ++D  L     VGQ +   V   ++ +DD+K   K+ I LS+       GL+   +  
Sbjct: 225  DEDDDLELKNYVRVGQYLRAAVTATIRNEDDRKVKNKKHIELSIEPHAANSGLTKADMVV 284

Query: 108  GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSI 162
               + A V S+EDHG ++  GL      GF+    L   +G+D   VK G +   +V   
Sbjct: 285  NATVQASVISVEDHGLVMDLGLEDNEAKGFISSRELP--AGVDISTVKEGSVFLCIVTGQ 342

Query: 163  DRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
            + +  V+ LS+D  +              +I+  +PG      +  +   G++   +   
Sbjct: 343  NASGTVIKLSADLPSAGSVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGML 402

Query: 221  TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN----------PYL 270
               VD+ H   +    +    Y+   K+  R++   P+S  V L  +             
Sbjct: 403  DAVVDVIHSGASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTAT 462

Query: 271  LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRK 327
            L N A      + DI  + KV  VD  LGL + + ST      +V +S +A+   + +  
Sbjct: 463  LVNGADDDLPSISDIIPEVKVTYVDSSLGLYVQLGST--KHQGFVHLSRLADGRVDSISS 520

Query: 328  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IA 383
            +E  YK GS    RI+GF  ++ L    L+    E   F   DV  G VVKGK+    I 
Sbjct: 521  IEGPYKVGSTHEGRIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIK 580

Query: 384  VDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 440
             +   G IV     +  L P  HM++ ++  P KKF+ G ++  RVL V  + +++ +T 
Sbjct: 581  PEGINGLIVSLTDSISGLVPEMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTL 640

Query: 441  KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
            KK+L+ S  A    Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +
Sbjct: 641  KKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKD 700

Query: 501  PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVV 555
            PS  + VGQVV    ++    + R+ +S    P+ V+ D     + V  G +VSG V   
Sbjct: 701  PSQHFTVGQVVNIHALTVDAENERLVVS-CKDPSTVTADYQSAFENVHPGLVVSGTVFEK 759

Query: 556  TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 614
            + + +++ +   G     + ++H++D      T   + I+ G + D LLV   + S+ L+
Sbjct: 760  SSDDLLIKLQDSGLI-ARLTSDHISDGSSTKRTSTLNRIRVGQKMDGLLVYRVKKSHRLI 818

Query: 615  --SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 670
              + K +L  +A +  LP+    I     V G V NII  G FV FL  LTG  P+    
Sbjct: 819  EVTNKATLKEAAAEGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVD 878

Query: 671  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK-----QSCCSSTDASFMQEHFLLE 725
            D   +     Y   Q + + +  V  ++ R  LSLK     +    S+ AS        E
Sbjct: 879  DDHASRPDFGYSRFQVISATVCAVQEDSDRFLLSLKPVSKLKQQSDSSSAS--------E 930

Query: 726  EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDV 775
            +K   +  +     ELK +E  ++G + + K+    D    VV        +   E  D 
Sbjct: 931  KKAPAVVLNNPIDEELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDS 990

Query: 776  YGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKK 833
            +  I   +    +  S +++   +L +  A+  + + +S ++  +  +  +      Q  
Sbjct: 991  WEDIKDRKRPLKSFHSKAILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQAS 1050

Query: 834  KRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFL 891
            + K    + L V       V  + E+ L L++ P     +    +S D + +   QK F 
Sbjct: 1051 EFKPLHLEQLKVGDRYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFP 1110

Query: 892  NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 951
             G ++   V  +       RL L  +  S  +T +     K      G ++   +T+I  
Sbjct: 1111 IGSALQVAVTGIDVEKN--RLDLSARIGSSAKTLTVADLSK------GMILVGRVTKITD 1162

Query: 952  LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1011
             ++ ++      G I + ++ DD + V     +NF   + +   ++   + P+ K SF  
Sbjct: 1163 RQVLVQINDNVVGAISLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKISF-- 1216

Query: 1012 ELSIKPSMLTVSEIG--SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1069
              S++PS +  S +      +    ++ +GQ V G+V +VDN    +T+   + A  +I 
Sbjct: 1217 --SVRPSKVLSSSLAVVDPEITSIDNLKVGQIVRGFVRRVDNIGVFVTLGHDVTA--YIR 1272

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----------PFQDGISDK 1119
             S    S L+E++  F + + V G +  ++K+   +++ L+          PF       
Sbjct: 1273 VSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKIQMSLKKSALDPNYKPPF------- 1325

Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
                   N++  +  G IV G++ K+      + +    +L G  H +E+    V D   
Sbjct: 1326 -------NLKD-LKIGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT- 1376

Query: 1180 GYDEGQFDPLSGYDEGQFVKCKVLEI 1205
                 Q      Y++   VK KVL++
Sbjct: 1377 -----QL-----YEKDDIVKAKVLKV 1392


>gi|363735321|ref|XP_421739.3| PREDICTED: protein RRP5 homolog [Gallus gallus]
          Length = 1793

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 380/1400 (27%), Positives = 641/1400 (45%), Gaps = 154/1400 (11%)

Query: 6    ISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEI---EANED-NLL 58
            +  GM   G + EV   +LVI LP GL G   +   +DA   +L  ++   E  ED N L
Sbjct: 38   LCEGMLFLGCIKEVTVFELVISLPNGLTGFVPVTHISDAYSELLSKQVTQGELLEDLNSL 97

Query: 59   PTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 118
              ++  G LV C+V  ++  K   G+R I LS+    + KGLS   +  GM+L+ +V S+
Sbjct: 98   SDLYSPGMLVRCVVTSVE--KSADGRRSIKLSINPKSVNKGLSASALTSGMLLSGFVSSV 155

Query: 119  EDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 173
            EDHGY++  G+     FLP         A   G D+K G  L  V+  +    +VV LS+
Sbjct: 156  EDHGYLIDIGVSGTHAFLPHQKAQNYIKAVKRGSDLKIGQSLNCVIEEVKNEGRVVRLSA 215

Query: 174  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
            D   V+  +  + +  ++  L+PG++V  +VQ +   GV L+FL+ FTG VD  H+    
Sbjct: 216  DRSEVAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGVSLTFLSSFTGIVDFMHVDPEK 275

Query: 234  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSK 290
             T     +Y+ ++ V A IL   PTS+ V LTL    LH    P+ +   ++G + ++S 
Sbjct: 276  ST-----NYSPNQMVKACILSTHPTSKVVRLTLRQAFLHPGGSPNQLSNDRIGAVVEEST 330

Query: 291  VVRVDRGLGLL--LDIPSTPVSTPAYVTISDVAEEEVRKLEK--KYKEGSCVRVRILGFR 346
            V    +  G +  LD      + P +++       + RK  K   +K G   + RI+ + 
Sbjct: 331  VKAFYKQFGAVFQLDDGMLAFARPKHLS-------KTRKSFKPAAFKAGCKHKCRIIDYS 383

Query: 347  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 406
             ++ +    LK    E     + D+  G V++GKV+++   G  V+   G+K L P  H+
Sbjct: 384  LMDEMCIVSLKHQIIEARFLRYEDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHL 443

Query: 407  SEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            ++  + +P KK+ VG E+  RVL      K++ +T KKTLV+SKL +LSSY +A   LIT
Sbjct: 444  ADVILKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLVQSKLPVLSSYEDAEPGLIT 503

Query: 465  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            HG++    + GC V+FYN V+G  P++EL  +P   P  ++H GQVVK  ++   P   R
Sbjct: 504  HGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQER 563

Query: 525  INLSFMMKPTRVSEDD-----------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK-G 572
            + LSF +    V E               ++G +V   V     N + V ++  G +   
Sbjct: 564  LLLSFRLSSRTVPEGRSECIPKKKQQVKYQIGEMVDVEVLKKNENGLEVSILEDGGNVIA 623

Query: 573  TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSD 630
             +PT HL+D + ++ ++   ++ G    +++ L ++   ++L  K ++I++ Q  Q+   
Sbjct: 624  WLPTVHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVRS 683

Query: 631  ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 690
             S I P  ++ GYV  ++  G FV F   +TG AP+    D    D    + VGQ+V + 
Sbjct: 684  FSEIQPGVLLIGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAK 743

Query: 691  ILDVNSETGRITLSLKQSCCSSTDA-----SFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            ++ ++ E  R+ LSLK S CSS D+     S + ++F   E+I  L   +      + V 
Sbjct: 744  VMSIDEEKQRVLLSLKVSECSSGDSAAESFSLLNQYFKEVEEIRNLLRRREESGLARCVC 803

Query: 746  GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDV 802
              + G  ++  V +  + G   +      V G     T + L G  V  G   +  +L V
Sbjct: 804  ELVPGKELQLVVQDVMEDG--SALFSGGCVRGLTVTATRYHLGGKNVIPGEKAKGLVLHV 861

Query: 803  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLV 862
                  V +SL+   +                 K+ A + L  +    AIV+ + E + +
Sbjct: 862  DAITSKVYVSLREELL-----------------KKRAKQRLTKNSQHPAIVQHIAEEFAI 904

Query: 863  LSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL----- 916
            +SL +          S +N T +F  ++   GQ + AT + +  ++  G LL +      
Sbjct: 905  VSLLDSGRLAAIPIASHFNDTFRFDSEKLKVGQRIYAT-LKMVKANDLGVLLAVQDPAKK 963

Query: 917  ------KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
                  +  SET    +  A  K S  +G +V   +  +KP  + +       G IH + 
Sbjct: 964  NAFVRDRKESETALEETLAAAVKHSLSLGDIVTGTVKSVKPTHVTVAIDDKLTGSIHASR 1023

Query: 971  VNDDKSNVVENLFSNF--KIGQTVTARIIAKSN----------KPDMKKSFLWELSIKPS 1018
            + D+   V  + F  +  K GQ VTAR+I   +           P   +S + ELSI+PS
Sbjct: 1024 ILDE---VPIHSFPTYTLKAGQKVTARVIGGRDVNTHRYLPITHPHFTRS-VPELSIRPS 1079

Query: 1019 ML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDN--EWALLTISRHLKAQLFILDSAYE 1074
             +   V  +      +    + GQ VT +V K +    W  + ++  ++ ++  L  +  
Sbjct: 1080 EIEGEVETMRDDTREKLGPYNTGQTVTCFVRKYNTLKNWLEVEVTPDVRGRVPRLLLSLN 1139

Query: 1075 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1134
               L+  ++ F  G+A++  V   +  +  L L L   Q                  +  
Sbjct: 1140 TKVLKHPEKNFKNGQALSATVTGTDATETNLFLSLTGIQS-----------------LEP 1182

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            G I  G ++K++  + GL + +     G+V    L +         Y E    PLS +  
Sbjct: 1183 GTITVGMVAKMIPHI-GLTITLPGGKAGKVSIFHLSD--------KYTES---PLSDFKI 1230

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            G+ V+C +L           ++LSLR S   ++  NS  +  DV+     +  I+D+   
Sbjct: 1231 GKVVRCYILS-----NENGKIQLSLRQS--RLNPRNSRKVE-DVE-----ITCIKDVKKG 1277

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSV 1311
             +V+GYVK+VT  G F  LS  L  ++L  N+S  +V+     EK  P GKL+  +VL V
Sbjct: 1278 QLVRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLDV 1337

Query: 1312 EPLSKRVEVTLKTSDSRTAS 1331
                  VE++L   D+   S
Sbjct: 1338 NKKENHVELSLLPEDTEMPS 1357



 Score =  276 bits (705), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 134/265 (50%), Positives = 185/265 (69%), Gaps = 3/265 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P++ D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI  REE EKLN+W
Sbjct: 1524 PQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQEKLNVW 1583

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            VA  NLEN YG   EE ++KVF+RA+QY +P KV   L  +Y  +E+ K A+EL + M++
Sbjct: 1584 VALLNLENMYGT--EETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLR 1641

Query: 1664 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
            +F+    VWL+    LLKQ Q E    +++RAL +LP  +H+  IS+ A LEF+ G  + 
Sbjct: 1642 RFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFRFGDPEH 1701

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
             +++FE  L+ YPKRTD+WSIY+D  I+ G    IR +FER I L+L PKKMKF FK+YL
Sbjct: 1702 AKALFESTLNSYPKRTDIWSIYMDIMIKQGSQKEIRDIFERVIHLNLAPKKMKFFFKRYL 1761

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
            +YEK  G  E +  VK  A+EYVE+
Sbjct: 1762 DYEKKYGTTETVMAVKTAALEYVEA 1786



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 8/173 (4%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            + ED+    ++QG V ++   G  + ++  +   V   +L+D  ++ PEK++ +G  V  
Sbjct: 404  RYEDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLADVILKQPEKKYNVGDEVRC 463

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITI 1363
            RVL   P  K++ +TLK    +T  QS++  LS   +   G I  G +     +G  +  
Sbjct: 464  RVLECNPAEKKLFLTLK----KTLVQSKLPVLSSYEDAEPGLITHGFVVCAREFGCIVKF 519

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             N ++ GL   +ELS + +   + ++  G+ VKV +LK + ++ R+ L  + S
Sbjct: 520  YN-DVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQERLLLSFRLS 571



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 4/115 (3%)

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSE--INNLSNLHVGDIVIGQIKRVESYGLFI 1361
            V  RV+ +     R+ +  + S   +A Q E  + + S +  G ++IG +++V  +G+F+
Sbjct: 649  VLPRVMCLSDKGDRI-ILCRKSAVISAVQEEQVVRSFSEIQPGVLLIGYVRKVMPFGVFV 707

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
                  + GL     +S+  V + +  +  G+ V  K++ +D+EK+R+ L +K S
Sbjct: 708  EFP-FGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLSLKVS 761


>gi|74190944|dbj|BAE28246.1| unnamed protein product [Mus musculus]
          Length = 1414

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 391/1411 (27%), Positives = 655/1411 (46%), Gaps = 164/1411 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 78   ESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  LD    E GK+ + LS+    + K LS + ++  M+LT  V 
Sbjct: 138  RLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPDMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FL      E     N G   K G  L  VV  +     VV L
Sbjct: 196  SLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S +   VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+ 
Sbjct: 256  SVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE- 314

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                      Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D 
Sbjct: 315  ----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  +
Sbjct: 371  VPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++
Sbjct: 428  DELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+  G E+  RVL    ++K++ +T KKTLV SKL++++ Y  A   L THG
Sbjct: 488  IMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
             I +++ +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ 
Sbjct: 548  VIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERML 607

Query: 527  LSF-MMKPTRVSEDDL---------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF ++  +R  +  +         V++G LV   V   T   + V ++    +   +PT
Sbjct: 608  LSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH  +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I
Sbjct: 667  PHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
             P  ++ G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V
Sbjct: 727  QPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNV 786

Query: 695  NSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIG 750
            +    R+ LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G
Sbjct: 787  DESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPG 846

Query: 751  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
             V++  VHE   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V
Sbjct: 847  MVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEV 906

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  
Sbjct: 907  HVSLHQDLVNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETG 948

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS-------- 920
            H + ++ +S  N T  F  ++   GQ V  T+       T   L+L ++  +        
Sbjct: 949  HLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTRMPV 1006

Query: 921  --ETETSSSK--------------------RAKKKSSYDVGSLVQAEITEIKPLELRLKF 958
              ++ET   K                    ++KK+ S  +G  V   I  +K   + +  
Sbjct: 1007 QRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSLAIGDKVTGTIKAVKATHVVVTL 1066

Query: 959  GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF--- 1009
              GF G IH + + DD   V  +  +  K G+ VTAR+I     K++K  P     F   
Sbjct: 1067 ADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLT 1125

Query: 1010 LWELSIKPSMLTVSEIGSKLLFEECDVSI-----GQRVTGYV--YKVDNEWALLTISRHL 1062
            + ELS++PS L  S        E     I     GQ VT +   Y V  +W  + I   +
Sbjct: 1126 ILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDI 1185

Query: 1063 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTV 1121
            + ++ +L ++     L+   ++F +G+A+   V+  +  +  L L ++ P++        
Sbjct: 1186 RGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR-------- 1237

Query: 1122 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
                      + EG++  GR+ K++    GL V       G+V    L +         Y
Sbjct: 1238 ----------LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSD--------SY 1278

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
             E    PL  +   + V+C +L  +  V     + LSLRSS     + N       ++ P
Sbjct: 1279 SEA---PLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR------IEDP 1324

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE---- 1297
               +  IED+     ++GYVK V      I L   +      S++S+     PEKE    
Sbjct: 1325 --EINSIEDVKEGQHLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNG 1380

Query: 1298 -FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
              P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1381 CLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1324 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1383
             +   T+  S I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 523  KT-LVTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580

Query: 1384 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 581  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611


>gi|403217806|emb|CCK72299.1| hypothetical protein KNAG_0J02180 [Kazachstania naganishii CBS 8797]
          Length = 1704

 Score =  405 bits (1041), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 346/1211 (28%), Positives = 573/1211 (47%), Gaps = 171/1211 (14%)

Query: 649  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            +TGC V F G + GF P ++  +       +   +GQ+V   +L V++E  RI      +
Sbjct: 606  KTGCIVSFFGGVRGFLPNAEISEVFVKKPEQHLRLGQTVVVRLLKVDAEDSRIL-----A 660

Query: 709  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 768
             C  ++A   ++    +E I  L   +               S+I   V E     +++ 
Sbjct: 661  TCKVSNAQAQEQ----KETIEQLVPGR---------------SMINVTVVEKTKDALIIE 701

Query: 769  FEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFI 818
             ++  ++ G +    L+ + +E           G+ ++  ++D     ++ +++LK   I
Sbjct: 702  MDK-VELRGVLQVGHLSDSRIEQNRADFKKIAIGTHLRGLVIDKETRTQVFNMTLKKSLI 760

Query: 819  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKENYLVLSLPEYNHSIG 873
            +    A            +  SKD  +   V +I +          ++ L LP Y     
Sbjct: 761  E---AAEKEELPTSYSDIKAVSKDTPLCGYVKSISDKGLFIAFNGKFVGLVLPSYAVESR 817

Query: 874  YASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA-----------ISET 922
               +S         K F   QSV A +  L S     R LL LKA             E 
Sbjct: 818  DVDIS---------KTFFINQSVSAYL--LRSDDENERFLLTLKAPKIESKKKEPASDEV 866

Query: 923  ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 982
                    KK S Y +G +V+  I  +K  +L +      HGRI ++EV D+ S+++   
Sbjct: 867  TNPIDNSIKKLSDYTIGKIVKGTIKAVKKNQLNIILADDLHGRIDVSEVYDNYSDILNTK 926

Query: 983  --FSNFKIGQTVTARIIA----KSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLF 1031
               S FK G  + A+I+     KS+K       +KK  + ELSIKPS+L+ SE    L  
Sbjct: 927  APLSQFKNGSIIEAKIVGNHDIKSHKFLPITHQIKKGTVLELSIKPSVLS-SEDNRPLSL 985

Query: 1032 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGKA 1090
            +  D+SIG  + G+V      +  LTIS  LKA+L + D   +  EL +  +  F +G A
Sbjct: 986  K--DISIGDELVGFVNNYSLNFLWLTISPILKAKLSMFDLTEDGLELSKNIEDNFPLGSA 1043

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
            +   V +I+   +   +       G S    D  +      I   D++  RI KI     
Sbjct: 1044 IPVKVTAIDSTHEFATVT------GRSHVVKDFDS------IAVNDVIPARIGKIFENF- 1090

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
             L++ +G  + G V  T        D L  +     +   G    + V  KV+ I +  +
Sbjct: 1091 -LLLDLGNSITGLVFAT--------DALDSF-STSLNEAYGDKVNRIVSAKVVAIDKKNK 1140

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
                + LSLRS    + +  S                  DL    IV G VK V  KG F
Sbjct: 1141 ---KINLSLRSEASKVPTVTS----------------YSDLKQGDIVHGLVKTVNDKGIF 1181

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            + LSR ++A V +S LSD Y++  +K +   + V G+V+  E   K + +TL+ S+    
Sbjct: 1182 VYLSRTVEAFVPISKLSDAYLKDWKKFYKPMQHVIGKVVKSED-DKHILITLRESEV-NG 1239

Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1389
                + N  ++ VG++  G +K +  +G+FI ++NT N+ GL H+SE+++   ++I +++
Sbjct: 1240 DLKVLKNYDDIKVGEVFKGSVKNITDFGVFIKLDNTANVTGLAHISEIADSTPNDISSLF 1299

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1449
              G+KVK  +LK +  K+++SL +K+S+F           E + ++  +++ + N     
Sbjct: 1300 GPGDKVKAIVLKTNSAKKQLSLSLKASHF--------TKEETDEEKDEDQIATVNFDD-- 1349

Query: 1450 ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1509
             +S V V D D+E+E                 P ++ L     D   G+S + G      
Sbjct: 1350 ADSEVDV-DSDIENE-----------------PEKMKLTSMSTD---GLSLSSGFDWTTS 1388

Query: 1510 TIDEKN-----------NRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSP 1558
             +D+             N    KK K +R   I   +   +   AP +  +FERL+  +P
Sbjct: 1389 ILDQARESESESEDEEDNFMESKKHKHKRRDRIVQDKTIDINTRAPESVGDFERLIMGNP 1448

Query: 1559 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1618
            NSS VW+ Y+AF L +++VEKAR IAERAL+TIN REE EKLNIW+A  NLEN +G P  
Sbjct: 1449 NSSVVWMNYIAFQLQLSEVEKAREIAERALKTINFREETEKLNIWIAMLNLENTFGTP-- 1506

Query: 1619 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQ 1677
            + +  +F+RA QY D   +H  LL +Y+ +++ + A  L     KKF      +W+   +
Sbjct: 1507 DTLDDIFKRACQYMDSYTMHNKLLSIYQMSDKTEAAATLFKATAKKFGSEKVSIWIAWSE 1566

Query: 1678 RLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1736
             LL   +++G + ++  AL +LP+  H++ + + A LEF  G ++RGRS+FEG+L++ PK
Sbjct: 1567 FLLANGEEDGARNILSNALKALPKRHHVEVVRRFAQLEFSKGDSERGRSLFEGLLADAPK 1626

Query: 1737 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1796
            R D+W++Y+DQE + GD   +  L+ER  S  +  K+ KF F K+L++E++ G+E+ I+Y
Sbjct: 1627 RIDIWNVYIDQESKAGDKQKVDALYERVFSRKITKKQAKFFFNKWLQFEETAGDEKMIDY 1686

Query: 1797 VKQKAMEYVES 1807
            VK KA EYV+S
Sbjct: 1687 VKAKASEYVDS 1697



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 274/1195 (22%), Positives = 520/1195 (43%), Gaps = 162/1195 (13%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA----------DALDPILDNEIE-- 51
            +++  G  L G V+E+N+ D+ +    G+ G               + LD  +D++ E  
Sbjct: 113  RSLKVGSSLIGQVSEINKNDICVTFSDGISGFVNLTHISEQFTHILEELDENMDSDEEKE 172

Query: 52   ---------ANEDNLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLL 96
                     A E   LP +   F +GQ + C VL    L    K   KR+I L++  S +
Sbjct: 173  SEYESDNEKAAEAKELPDLKNYFKLGQWLRCNVLTNNALTTKSKNNKKRRIELTIEPSYV 232

Query: 97   YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQ 156
                + E + +   +   VKS+EDHG  L  G+   TGF+ + ++  + G+   PG +  
Sbjct: 233  -NTFTEEDLVKSAPVQCSVKSVEDHGATLDVGVVGITGFISKKDIGSSLGL--LPGAVFL 289

Query: 157  GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLS 215
            G V    +T +VV ++ D  +    +T+    IS +D LVPGM +    ++I  +G++  
Sbjct: 290  GNVYK--QTERVVNINLDFSSKKNKITQ----ISNVDALVPGMSLDLLCKAITPSGIVGK 343

Query: 216  FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL--FVDPTSRAVGL-TLNPYLLH 272
                  G +   HL   F   + K+ +     +  R+L   ++  S  V L +L P +  
Sbjct: 344  CFGLVNGFISSAHL-GVFKEDDMKHKFAIGSNIQCRVLATLINNESEKVALLSLIPNI-- 400

Query: 273  NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK-- 330
             R  P+ +K  + ++   +       G   +          Y+ ++ V ++ V ++ K  
Sbjct: 401  ERLEPT-LKCTEAFEAFPI-------GYNFETTKVKGRDSEYLYLA-VDDDRVGRVHKSR 451

Query: 331  --KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI-AVDSF 387
              +      ++ +++G+  ++ +                  D+K G ++   ++ AV   
Sbjct: 452  IGELDSTDNLKAKVMGYDIVDNMYELATDPKILALKYVRSKDIKIGELLTTCIVNAVSEK 511

Query: 388  GAIVQFPGG--VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTL 444
            G  ++   G  V  + PL H+S+  +V P +KFK+G ++  R+L V ++ RI  T KK+L
Sbjct: 512  GIELKIFNGQFVATVSPL-HISDTRLVYPERKFKIGGKVKARILNVDNRGRIYATMKKSL 570

Query: 445  V---KSKLAILSSYAEA-TDRLITHGWITKIE---KHGCFVRFYNGVQGFAPRSELGLDP 497
            V   + +  I+SSY  A T +      +  +E   K GC V F+ GV+GF P +E+    
Sbjct: 571  VNLEQDETPIISSYEIAKTAKEKNEKTLATVEVFRKTGCIVSFFGGVRGFLPNAEISEVF 630

Query: 498  GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVV 552
              +P     +GQ V  R++       RI  +  +   +  E     + LV   S+++  V
Sbjct: 631  VKKPEQHLRLGQTVVVRLLKVDAEDSRILATCKVSNAQAQEQKETIEQLVPGRSMINVTV 690

Query: 553  DVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSN 611
               T +A+++  + K   +G +   HL+D  +E        I  G    + LV+D E+  
Sbjct: 691  VEKTKDALIIE-MDKVELRGVLQVGHLSDSRIEQNRADFKKIAIGTHL-RGLVIDKETRT 748

Query: 612  LL--LSAKYSLINSA--QQLP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 664
             +  ++ K SLI +A  ++LP   SD   +  ++ + GYV +I + G F+ F G+  G  
Sbjct: 749  QVFNMTLKKSLIEAAEKEELPTSYSDIKAVSKDTPLCGYVKSISDKGLFIAFNGKFVGLV 808

Query: 665  PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLL 724
              S AV+ +  D+SKT+++ QSV + +L  + E  R  L+LK     S            
Sbjct: 809  LPSYAVESRDVDISKTFFINQSVSAYLLRSDDENERFLLTLKAPKIESK----------- 857

Query: 725  EEKIAMLQSSKHNGSELKWVEGFIIGSVIEG--KVHESNDFGVVVSFEEHS--------D 774
            +++ A  + +    + +K +  + IG +++G  K  + N   ++++ + H         D
Sbjct: 858  KKEPASDEVTNPIDNSIKKLSDYTIGKIVKGTIKAVKKNQLNIILADDLHGRIDVSEVYD 917

Query: 775  VYGFITHHQLAGATVESGSVIQAAIL---DVA-----------KAERLVDLSLKTVFIDR 820
             Y  I + +   +  ++GS+I+A I+   D+            K   +++LS+K   +  
Sbjct: 918  NYSDILNTKAPLSQFKNGSIIEAKIVGNHDIKSHKFLPITHQIKKGTVLELSIKPSVL-- 975

Query: 821  FREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSD 879
               +  NR          + KD+ +   +   V     N+L L++ P     +    +++
Sbjct: 976  --SSEDNRPL--------SLKDISIGDELVGFVNNYSLNFLWLTISPILKAKLSMFDLTE 1025

Query: 880  YNTQ--KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD 937
               +  K  +  F  G ++   V A+ S+               T T  S   K   S  
Sbjct: 1026 DGLELSKNIEDNFPLGSAIPVKVTAIDSTHEFA-----------TVTGRSHVVKDFDSIA 1074

Query: 938  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
            V  ++ A I +I    L L  G    G +  T+  D  S  +   + + K+ + V+A+++
Sbjct: 1075 VNDVIPARIGKIFENFLLLDLGNSITGLVFATDALDSFSTSLNEAYGD-KVNRIVSAKVV 1133

Query: 998  A--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1055
            A  K NK  +  S   E S  P++ + S           D+  G  V G V  V+++   
Sbjct: 1134 AIDKKNKK-INLSLRSEASKVPTVTSYS-----------DLKQGDIVHGLVKTVNDKGIF 1181

Query: 1056 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1110
            + +SR ++A  F+  S    + L+++++ +   + V G V+    +K +L + LR
Sbjct: 1182 VYLSRTVEA--FVPISKLSDAYLKDWKKFYKPMQHVIGKVVKSEDDKHIL-ITLR 1233



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 28/244 (11%)

Query: 182  VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT-NWKN 240
            V KD   I+++ ++P      R+  I EN ++L      TG V      ++F T+ N   
Sbjct: 1066 VVKDFDSIAVNDVIPA-----RIGKIFENFLLLDLGNSITGLVFATDALDSFSTSLNEAY 1120

Query: 241  DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP----SHVKVGDIYDQSKVVRVDR 296
                ++ V+A+++ +D  ++ + L+L      ++ P     S +K GDI         D+
Sbjct: 1121 GDKVNRIVSAKVVAIDKKNKKINLSLRSE--ASKVPTVTSYSDLKQGDIVHGLVKTVNDK 1178

Query: 297  GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLAT 353
            G+ + L       +  A+V IS +++  ++  +K YK    V  +++     +H+  L T
Sbjct: 1179 GIFVYL-----SRTVEAFVPISKLSDAYLKDWKKFYKPMQHVIGKVVKSEDDKHI--LIT 1231

Query: 354  GILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
              L+ S   G   ++  + D+K G V KG V  +  FG  ++       +  L H+SE  
Sbjct: 1232 --LRESEVNGDLKVLKNYDDIKVGEVFKGSVKNITDFGVFIKLDNTAN-VTGLAHISEIA 1288

Query: 411  IVKP 414
               P
Sbjct: 1289 DSTP 1292


>gi|344274767|ref|XP_003409186.1| PREDICTED: protein RRP5 homolog [Loxodonta africana]
          Length = 1872

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 388/1404 (27%), Positives = 649/1404 (46%), Gaps = 161/1404 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            + +  GM++ G V EV++ +LVI LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 78   ETLCEGMRILGCVKEVSDLELVISLPNGLKGFVQVTEICDAYTKKLNEQVAQEEPLKDLV 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  +   +K  GK+ + LSL    +   LS E ++ GM+LT  V 
Sbjct: 138  RLPELFSPGMLVRCVVSSVGITEK--GKKSVKLSLNPRNVNGVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  V+  +  +  VV L
Sbjct: 196  SLEDHGYLVDIGVSGNRAFLPLQKAQEDTRQKNKGAKLKVGQYLNCVIEEVKSSGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ ++FL+YFTG VD  HL+ 
Sbjct: 256  SVGHSEVSTAIATEEQNWTLNNLLPGLVVKGQVQKVTPFGLTVNFLSYFTGLVDFMHLEP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQ 288
                T + N     + V A ILF+ P +RAV L+L P  L    P + +    +G + D 
Sbjct: 316  KKTGTYFSN-----QAVRACILFIHPRTRAVRLSLRPVFLQPGRPLTRLSCQHLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V       G    +    +   AY   S ++  +     + +K G+  + RI+ +  +
Sbjct: 371  LPVHGFFNKAGATFKLKDGAL---AYARFSHLSNSKNVFKPEIFKPGNTHKCRIIDYSPM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E    ++ D KPG VVKG V+ +  +G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLSYHDTKPGAVVKGTVLTIKPYGMLVKVGEQIRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ VG E+  RVL    ++K++ +T KKTLV+S+L  ++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYSVGDEVKCRVLVCDPEAKKLMMTLKKTLVESRLPAITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++  GC V+FYN VQG  P+ EL  +    P ++++ GQV+K  +++  PA  R+ 
Sbjct: 548  FILRVKDCGCIVKFYNDVQGLVPKHELSAEYIPAPETVFYPGQVMKVVVLNCEPAKERML 607

Query: 527  LSFMM--KPTRVSEDD--------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +   P    E +         V +G LV   V   T + + V V+      G +P 
Sbjct: 608  LSFKLLSDPEAKKEREGGSQKKRRAVHVGQLVDVKVVEKTEDGLEVAVLPHSIP-GFLPI 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L +E   +LL  K +L+++ +  Q P   S I
Sbjct: 667  PHLSDHVPNGPLLYHWLQAGDTLHRVLCLQSE-GRVLLCRKPALVSAVEGGQDPKSFSEI 725

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 726  HPGMLLMGFVKSIKDYGVFVQFPSGLSGLAPKAAMSDKFVTSTSDHFVEGQTVVAKVTNV 785

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C+  D +      LL + +  LQ      S  +   ++ +     
Sbjct: 786  DEEKQRMLLSLRLSDCTLGDVA-TTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTP 844

Query: 750  GSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAE 806
            G +++ +V E  + G VV       V G +   + +  AG  VESG   +A +L+V   +
Sbjct: 845  GMILDLEVQEVLEDGSVVF--GGGPVPGLVLRASRYHRAGQEVESGQKKKAVVLNVDMLK 902

Query: 807  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 866
              V +SL    +        NR+ +K K+  E            A V+ ++E++ + SL 
Sbjct: 903  LEVHVSLCQDLV--------NRKHKKLKKGSE----------YQATVQHLEESFAIASLV 944

Query: 867  EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 925
            E      ++  S  N T +F  ++   GQ V   + A     T   L+L ++  +   T 
Sbjct: 945  ETGQLAAFSLTSHLNDTFRFDSEKLQVGQGVSLALKATQPGVTG--LILAVEGPAAKRTM 1002

Query: 926  SSKRAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 966
               R +                   KK +  +G +V   +  IK   + +    G  G I
Sbjct: 1003 RQTRKESETVDEDEESDPALVVGTVKKHTLSIGDMVTGTVKSIKATHVVVTLEDGVIGCI 1062

Query: 967  HITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKP 1017
            H + + DD   V  +  S  K+G+TVTAR+I     K+ K  P     F+    ELS++P
Sbjct: 1063 HASNILDD-VPVGTSPTSKLKVGKTVTARVIGGRDVKTYKFLPISHPRFIRTIPELSVRP 1121

Query: 1018 SML-----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFIL 1069
            S L     T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L
Sbjct: 1122 SELEKDGHTALNTHSVSPSEKIKQYQAGQTVTCFLKRYNVVKKWLEVEIAPDIRGRIPLL 1181

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
             ++     L+   ++F IG+A+   V+  +  K  L L L             I    ++
Sbjct: 1182 LTSLSFKVLKHPDKKFRIGQALNATVVGPDSCKAFLCLSL-------------IGPHKLE 1228

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                +G++  GR+ K+     GL V      +GR          VSD    Y E    PL
Sbjct: 1229 ----KGEVAMGRVVKVTPN-EGLTVSFPFGKFGRASI-----FHVSD---SYSE---TPL 1272

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
              +   + V+C VL  +  V     + LSLR      SS  + +  + ++ P   +  I+
Sbjct: 1273 EDFVPQKIVRCCVLSTAGHV-----LTLSLR------SSRTNPETKSKIEDP--EINSIQ 1319

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKL 1303
            D+    +++GYVK V   G    L   +   V L+  S     SP K+       P GKL
Sbjct: 1320 DIEEGQLLRGYVKAVEPHGVLFSLGPSV---VGLARYSHVSQYSPSKKALYSRYLPEGKL 1376

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDS 1327
            +  ++LS+      V ++   SD+
Sbjct: 1377 LTAKILSLNHKRSLVRLSFLPSDT 1400



 Score =  280 bits (717), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 138/285 (48%), Positives = 202/285 (70%), Gaps = 4/285 (1%)

Query: 1525 EEREQEIRAAEERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1583
            ++ E+E+   EE L++ +  P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1583 QKAEKELSRIEEALMDPRRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1642

Query: 1584 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1643
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1643 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1700

Query: 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1702
            +Y ++E+ + A EL  +M+K+F+    VW++    LL + Q G    V+QRAL  LP+ +
Sbjct: 1701 IYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGSFLLGRGQAGASHRVLQRALECLPQKE 1760

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
            H+  I++ A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1761 HVDVIARFAQLEFQLGDKERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGTQKEVRDIFE 1820

Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1821 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1865



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 6/167 (3%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            D  P  +V+G V  +   G  + +  ++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DTKPGAVVKGTVLTIKPYGMLVKVGEQIRGLVPPMHLADILMKNPEKKYSVGDEVKCRVL 508

Query: 1310 SVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
              +P +K++ +TLK +  +SR  +   I   ++   G    G I RV+  G  +   N +
Sbjct: 509  VCDPEAKKLMMTLKKTLVESRLPA---ITCYADAKPGLQTHGFILRVKDCGCIVKFYN-D 564

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + GL    ELS +++   ET++  G+ +KV +L  +  K R+ L  K
Sbjct: 565  VQGLVPKHELSAEYIPAPETVFYPGQVMKVVVLNCEPAKERMLLSFK 611



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 100/245 (40%), Gaps = 33/245 (13%)

Query: 880  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 939
            +   K P K+F  GQ++ ATV+  P S  A   L L+                    + G
Sbjct: 1187 FKVLKHPDKKFRIGQALNATVVG-PDSCKAFLCLSLIGP---------------HKLEKG 1230

Query: 940  SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
             +    + ++ P E L + F  G  GR  I  V+D  S   E    +F   + V   +++
Sbjct: 1231 EVAMGRVVKVTPNEGLTVSFPFGKFGRASIFHVSDSYS---ETPLEDFVPQKIVRCCVLS 1287

Query: 999  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1054
             +         +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V+    
Sbjct: 1288 TAG-------HVLTLSLRSSR-TNPETKSKIEDPEINSIQDIEEGQLLRGYVKAVEPHGV 1339

Query: 1055 LLTISRHLKA-QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1113
            L ++   +     +   S Y PS+   + R    GK +T  +LS+N ++ L+RL   P  
Sbjct: 1340 LFSLGPSVVGLARYSHVSQYSPSKKALYSRYLPEGKLLTAKILSLNHKRSLVRLSFLPSD 1399

Query: 1114 DGISD 1118
             G  D
Sbjct: 1400 TGKPD 1404



 Score = 44.3 bits (103), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             + S +H G +++G +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 720  KSFSEIHPGMLLMGFVKSIKDYGVFVQFP-SGLSGLAPKAAMSDKFVTSTSDHFVEGQTV 778

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
              K+  VD+EK+R+ L ++ S
Sbjct: 779  VAKVTNVDEEKQRMLLSLRLS 799



 Score = 41.2 bits (95), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 11/140 (7%)

Query: 1285 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS-----EINNLS 1339
            ++SD Y E+P ++F   K+V   VLS       + ++L++S +   ++S     EIN++ 
Sbjct: 1262 HVSDSYSETPLEDFVPQKIVRCCVLSTA--GHVLTLSLRSSRTNPETKSKIEDPEINSIQ 1319

Query: 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDHVDNIETIYRAGEKVK 1396
            ++  G ++ G +K VE +G+  ++   ++VGL    HVS+ S             G+ + 
Sbjct: 1320 DIEEGQLLRGYVKAVEPHGVLFSL-GPSVVGLARYSHVSQYSPSKKALYSRYLPEGKLLT 1378

Query: 1397 VKILKVDKEKRRISLGMKSS 1416
             KIL ++ ++  + L    S
Sbjct: 1379 AKILSLNHKRSLVRLSFLPS 1398


>gi|440912389|gb|ELR61959.1| Protein RRP5-like protein, partial [Bos grunniens mutus]
          Length = 1304

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 371/1295 (28%), Positives = 609/1295 (47%), Gaps = 148/1295 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D   +  NE  A E+ L    
Sbjct: 81   ESLCEGMRILGCVKEVNELELVISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQDLV 140

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  LD  K    K+ + LSL    + + LS ET++ GM+LT  V 
Sbjct: 141  GLPELFSPGMLVRCVVSSLDTTKGS--KKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVS 198

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +  +R VV L
Sbjct: 199  SLEDHGYLVDIGVSGARAFLPLQKAQEYIWQKNKGAKLKVGQYLNCLIEEVKGSRGVVTL 258

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L FL++F+G VD  HL  
Sbjct: 259  SIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDP 318

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     ++V A +L V P +RAV L+L P  L    P + +   ++G + D 
Sbjct: 319  KKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAVLDD 373

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V       G    +      T AY   + ++  +     + +K G+  + RI+ +  +
Sbjct: 374  VPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDYSQM 430

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D+KPG +VKGKV+ +   G +V+    ++ L P  H+++
Sbjct: 431  DELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD 490

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              I  P KK+ VG E+  RVL    K+K++ +T KKTLV+SKL  ++ Y +A   L THG
Sbjct: 491  ILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHG 550

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  PR EL  +   +P S+++ GQVVK  +++  P+  R+ 
Sbjct: 551  FILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERML 610

Query: 527  LSFMM--KPTRVSEDD------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
            LSF +   P +  E         V  G LV   V   T + + V V+      G +PT H
Sbjct: 611  LSFRLLSDPKQECEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIP-GFLPTAH 669

Query: 579  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 636
            L+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P   S IHP
Sbjct: 670  LSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEIHP 729

Query: 637  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              ++ G+V NI + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ 
Sbjct: 730  GMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDE 789

Query: 697  ETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSV 752
            E  R+ LSL+ S C+  D +          LEE+  +     +  S L + +     G  
Sbjct: 790  EKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMA 849

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLV 809
            ++ +V E  + G V+ F E   V G +   + +  AG  +E G   +A IL+V   +  V
Sbjct: 850  LDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKLEV 907

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    +        NR+A+K K+  +          + AIV+ ++E++ V SL E  
Sbjct: 908  HVSLCHDLV--------NRKAKKLKKGSD----------LQAIVQHLEESFAVASLVETG 949

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 950  HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVTG--LLLAVEGPAAKRTMRQT 1007

Query: 929  RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 1008 RKDSETVDEDEEVDPALVIGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHAS 1067

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKP 1017
             + DD   V  +  +  K+G+ VTAR+I      DMK   FL            ELS++P
Sbjct: 1068 HILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRP 1123

Query: 1018 SML------TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFIL 1069
            S L      T++      L +      GQ VT ++  Y +  +W  + I+  ++ ++ +L
Sbjct: 1124 SELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKKYNMVKKWLEVEIAPDIRGRIPLL 1183

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK--LLRLVLRPFQDGISDKTVDISNDN 1127
             ++     L+   ++F IG+A+   V+   +  K  L   ++ P +              
Sbjct: 1184 LTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHK-------------- 1229

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
                + +G++  GR+ K+ +   GL V      +GRV    + +  VSD  S      F 
Sbjct: 1230 ----LKKGEVAMGRVVKV-TPKEGLTVSFP---FGRVGRVSMFH--VSDSYSETHLEDFV 1279

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1222
            P       Q V+C VL  +  V     + LSLRSS
Sbjct: 1280 P------QQIVRCYVLSAATPV-----LTLSLRSS 1303



 Score = 70.5 bits (171), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 452  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 511

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1366
              +P +K++ +TLK    +T  +S++  ++   +   G    G I RV+ YG  +   N 
Sbjct: 512  LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 566

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            ++ GL    ELS ++V + E+++  G+ VKV +L  +  K R+ L  +
Sbjct: 567  DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 614



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 105/481 (21%), Positives = 193/481 (40%), Gaps = 67/481 (13%)

Query: 918  AISETETSSSKRAKKKS----SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 973
            +I  +E S++   +++S    S   G +V+A++ ++ PL L LKF   F G +    ++ 
Sbjct: 259  SIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDP 318

Query: 974  DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1033
             K+      FSN    Q V A ++         ++    LS++P  L      ++LL ++
Sbjct: 319  KKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPGRPLTRLLCQQ 366

Query: 1034 CDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1090
                +    V G+       + L   T++   +  L      ++P         F  G  
Sbjct: 367  LGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA-------FKPGNT 419

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
                ++  ++  +L  L LR     I +      +D     I  G +V G++  I     
Sbjct: 420  HKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKGKVLTIKPH-- 469

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
            G+VV++G  + G V    L +I + +P   Y  G        DE   VKC+VL      +
Sbjct: 470  GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVG--------DE---VKCRVLLCDPKAK 518

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
                + ++L+ +L              V++    +   +D  P +   G++  V   GC 
Sbjct: 519  ---KLMMTLKKTL--------------VESKLPAITCYDDAKPGLQTHGFILRVKDYGCI 561

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-TSDSRT 1329
            +     +   V    LS  YV  PE  F  G++V   VL+ EP  +R+ ++ +  SD + 
Sbjct: 562  VKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQ 621

Query: 1330 ASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
              + +       +  G +V  ++      GL + +   N+ G    + LS DHV N   +
Sbjct: 622  ECEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPTAHLS-DHVTNGPLL 680

Query: 1389 Y 1389
            Y
Sbjct: 681  Y 681



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 162/395 (41%), Gaps = 55/395 (13%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 456  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 511

Query: 999  KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1054
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V +   
Sbjct: 512  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 560

Query: 1055 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
            ++     ++  +    L + Y P      +  F+ G+ V   VL+    K+ + L  R  
Sbjct: 561  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 616

Query: 1113 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELKN 1171
             D    +  +  +   +  +  G +V  ++  +     GL V + PH + G +    L +
Sbjct: 617  SD--PKQECEGQSQKKKKAVSAGQLVDVKV--LEKTKDGLKVAVLPHNIPGFLPTAHLSD 672

Query: 1172 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1231
               + PL       +  L   D    V C  L +S   R     + +L S+++G      
Sbjct: 673  HVTNGPL------LYHWLQTGDTLHRVLC--LSVSEE-RVLLCRKPALVSAVEG------ 717

Query: 1232 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1291
                      G++ +   ++ P M++ G+VKN+   G F+     L      + LSD +V
Sbjct: 718  ----------GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFV 767

Query: 1292 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
             S    F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 768  TSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 802



 Score = 45.1 bits (105), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             + S +H G ++IG +K ++ YG+F+    + L GL   + LS+  V +    +  G+ V
Sbjct: 722  KSFSEIHPGMLLIGFVKNIKDYGVFVQFP-SGLSGLAPKAILSDKFVTSTSDHFVEGQTV 780

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
              K+  VD+EK+R+ L ++ S
Sbjct: 781  VAKVTNVDEEKQRMLLSLRLS 801


>gi|255714000|ref|XP_002553282.1| KLTH0D13156p [Lachancea thermotolerans]
 gi|238934662|emb|CAR22844.1| KLTH0D13156p [Lachancea thermotolerans CBS 6340]
          Length = 1731

 Score =  402 bits (1033), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 381/1340 (28%), Positives = 625/1340 (46%), Gaps = 201/1340 (15%)

Query: 542  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
            + +G++V G       +  +   I  G  K T+P  H++D        +   K G +   
Sbjct: 508  IPVGTIVPGCEITEVSDKGIKLSIFGGQFKATVPPLHISDI--RLVYPERKFKIGSKVKG 565

Query: 602  LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH-------PNSVVHGYVCNIIETGCFV 654
            +L+   E   L +S K SL+N  ++    AS           +S +   V      GC V
Sbjct: 566  ILINATERGQLFMSLKKSLVNLDREETELASSFEDIEKIASSDSKLAATVDIFKPNGCIV 625

Query: 655  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
             FL  L GF P S   +           +GQ+V   +L  N E  R+ ++ K    SS  
Sbjct: 626  SFLNGLRGFLPNSNISEAYVKRPQDHLRLGQTVIVKVLQHNKEQNRVIVTCK---VSSEA 682

Query: 715  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHS 773
            AS  +E                       +E  I+G S+I+  V E     +VV  +  +
Sbjct: 683  ASLQREA----------------------IENMIVGRSIIKVAVVEKTKDSIVVE-QVGT 719

Query: 774  DVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
             + G +    L+ + VE           GS ++  ++D  +  R+ +LS K   +    +
Sbjct: 720  GLRGVVYVGHLSDSRVEQNRAQLKKLKIGSELEGLVIDKDERTRVFNLSCKKSLMKDAEK 779

Query: 824  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKE---------NYLVLSLPEYNHSIGY 874
            +      Q  K++       G H   N  V+ V E          ++ L LP Y      
Sbjct: 780  SLLPLNYQDVKQR-------GNHSPFNGYVKSVSEKGVFVAFNGQFVGLVLPSYAVDSRD 832

Query: 875  ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA---- 930
             S+S          +F   QSV A    L +     R LL  K     ++S +  +    
Sbjct: 833  VSLS---------SKFYVNQSVSA--FLLRTDDDNERFLLSFKEPKNEKSSKTPESERPA 881

Query: 931  --------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 980
                    K+ S + +G + +A++  +K  +L +      HGRI I+EV D   ++ +  
Sbjct: 882  INPVDQSIKEVSEFALGKVTKAKVKAVKKNQLNVVLSDNLHGRIDISEVFDKFEDIKDPK 941

Query: 981  NLFSNFKIGQTVTARIIA----KSNK-----PDMKKSFLWELSIKPSMLT-VSEIGSKLL 1030
               + FK G  +  ++I     KS+K         K+ L ELS KPS L  V+    K  
Sbjct: 942  KPLATFKKGDVLDVKVIGFHDVKSHKFLPVSHRSSKNVLIELSAKPSSLAGVNHATIK-- 999

Query: 1031 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGK 1089
                DV +G  + G+V  V  +   LT+S  LKA++   D A E S+L    +  F +G 
Sbjct: 1000 ----DVKVGDSIVGFVNNVSKDIMWLTVSPSLKAKIDFFDLADENSQLGHGIEDSFPLGC 1055

Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1148
            A+   V+SI++++  L +  R     GI D             I+ GD +  R+ KI   
Sbjct: 1056 ALRTKVVSIDQDRNTLSVSARTHDIKGIKD-------------INVGDCLPARLLKITDS 1102

Query: 1149 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1208
               L++++G ++ G V F        +D L  Y +   D +    +   V  KV+ I + 
Sbjct: 1103 Y--LLLELGENVRG-VAFA-------TDALDDYSKPLKD-VYANQKNSIVSAKVISIDKD 1151

Query: 1209 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1268
              G  ++ L   +  DG + T+                  EDL    +V+G VK +T KG
Sbjct: 1152 -DGKLNLSLRSENPRDGTAKTH------------------EDLKRGDVVRGLVKKITEKG 1192

Query: 1269 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
             FI LS  L A V +S L+D +++   K F   + V G+V++ +  S  + VTLK     
Sbjct: 1193 IFIYLSSTLQAFVPVSKLTDSFIKDWRKFFKPMQSVVGKVVNCDDDS-HILVTLK----- 1246

Query: 1329 TASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSED 1380
               +SE+N       + +++ VG+I  G +K V  +GLF+ ++NT N+ GL H +E+++ 
Sbjct: 1247 ---ESEVNGELRILKSYNDIKVGEIFEGAVKNVTDFGLFVKLDNTVNVTGLAHKTEVADS 1303

Query: 1381 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEV 1440
             V ++ +I+  G+KVK  +LKV+ +K+++SLG+K+SYFK   +N Q S + E DE  E  
Sbjct: 1304 AVGDLASIFGVGDKVKAIVLKVNPDKKQLSLGLKASYFKESNEN-QASDDAEGDEGSESS 1362

Query: 1441 GS--YNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD-NG 1497
                 N     E+ S  ++  D E ED G                  +   +QP +  +G
Sbjct: 1363 DEEVVNEEGQ-ESDSDGMEVDDHEGEDKG------------------DKSKQQPVLSSDG 1403

Query: 1498 ISQNQGHTDEAKTIDEKNNRHAKKKEKEER-------EQEIRAAEERLLEKD--APRTPD 1548
            +S + G       +D+     + ++E           ++ ++  E++ ++ +  AP +  
Sbjct: 1404 LSLSAGFDWTTSILDQAQEEESSEEEDFSETKRSKKKKKSVQGVEDQTIDINTRAPESVG 1463

Query: 1549 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1608
            +FER++  +PNSS +W+ YMAF L + +++KAR +AERAL+TI+ REE EKLNIW+   N
Sbjct: 1464 DFERMIMGNPNSSVIWMNYMAFQLQLGEIDKAREVAERALKTISFREEAEKLNIWIGLLN 1523

Query: 1609 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KH 1667
            LEN +G   E  + +VF RA QY D   +H  L+ +++ +   + A  L     KKF   
Sbjct: 1524 LENTFGT--ESTLNEVFSRACQYMDSYTIHSKLINIFQMSHNFEKASLLFKTTAKKFGAE 1581

Query: 1668 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
               +W+     L++Q + E  + V+  AL SLPR  HI+ + + A LEF  G +++GRS+
Sbjct: 1582 KVSIWVLWSDFLIEQGRAEEARQVLASALQSLPRRNHIEVVRKFAQLEFAKGDSEQGRSL 1641

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1786
            FEG+L++ PKR DLW++YLDQEI+ GD   +  LFER ++  L  K+ KF F K+L++E+
Sbjct: 1642 FEGLLADTPKRIDLWNVYLDQEIKSGDKKRVENLFERVVNRKLTRKQAKFFFGKWLDFEE 1701

Query: 1787 SVGEEERIEYVKQKAMEYVE 1806
            +  +++  EYVK KA EYVE
Sbjct: 1702 ASDDQKTAEYVKAKASEYVE 1721



 Score =  133 bits (334), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 291/1281 (22%), Positives = 524/1281 (40%), Gaps = 181/1281 (14%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI----------LDNEIEAN 53
            +N+  G  + G +++VN+ DL + L   L G     +  +P           ++++ EA+
Sbjct: 116  RNLPVGTLVLGRISKVNKHDLCVALSDNLCGFVTLPNISEPFTKLLEDIDESMESDKEAS 175

Query: 54   EDNL--------------------------LPTIFHVGQLVSCIVLQ---LDDDKKEIGK 84
            +D                            L   F  GQ + C V     LD + K+  +
Sbjct: 176  DDESDAEYDNDDDDQKSSQAQAAKLKDLPDLNNFFTQGQWLRCSVHSNSALDKNSKK--Q 233

Query: 85   RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 144
            ++I LS+  S   + L  E +     +   VKSIEDHG IL  G+   TGF+ +      
Sbjct: 234  KRIELSIEPSATNQ-LIEEDLARNCTIQCAVKSIEDHGAILDVGMDGITGFISKKEC--E 290

Query: 145  SGIDVKPG-LLLQGVVRSIDRTRKVVY-LSSDPDTVSKCVTKDLKGISIDLLVPGMMVST 202
            S  +  PG + L  V +   RT  V +   +    VS+         S+D ++PG  V  
Sbjct: 291  SLPNFAPGTVFLANVAKKSGRTVTVNFEFKNKKSKVSQIS-------SVDAVIPGQAVDF 343

Query: 203  RVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAV 262
              Q    NGV+        G ++I   Q     T+ K+D       N R+  +       
Sbjct: 344  LCQKKTSNGVIGKVFGLVDGFLNI--SQQAIFYTDSKSDQAYPIGSNTRVRIIAS----- 396

Query: 263  GLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
                    L N++    V + D+     +     G   L   P         V   D ++
Sbjct: 397  --------LKNKSGDKFVILSDLPSVLSLASETSGNSALEAFPVGYTFENCEVKGRD-SQ 447

Query: 323  EEVRKLEKKY-------KEGSC-----VRVRILGFRHLEG---LATGILKASAFEGLVFT 367
                KL K +       K G       V  R+LG+   +G   LAT   K  A E L   
Sbjct: 448  YFYLKLNKDFLGRVHLSKTGEQEPSGEVSARVLGYDSFDGYYQLATDP-KVIAVEYL--R 504

Query: 368  HSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
              D+  G +V G ++  V   G  +  F G  KA  P  H+S+  +V P +KFK+G+++ 
Sbjct: 505  PIDIPVGTIVPGCEITEVSDKGIKLSIFGGQFKATVPPLHISDIRLVYPERKFKIGSKVK 564

Query: 426  FRVLGVKSK-RITVTHKKTLV---KSKLAILSSYAE----ATDRLITHGWITKIEKHGCF 477
              ++    + ++ ++ KK+LV   + +  + SS+ +    A+        +   + +GC 
Sbjct: 565  GILINATERGQLFMSLKKSLVNLDREETELASSFEDIEKIASSDSKLAATVDIFKPNGCI 624

Query: 478  VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP---- 533
            V F NG++GF P S +       P     +GQ V  +++       R+ ++  +      
Sbjct: 625  VSFLNGLRGFLPNSNISEAYVKRPQDHLRLGQTVIVKVLQHNKEQNRVIVTCKVSSEAAS 684

Query: 534  -TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKS 591
              R + ++++   S++   V   T +++VV  +  G  +G +   HL+D  +E       
Sbjct: 685  LQREAIENMIVGRSIIKVAVVEKTKDSIVVEQVGTGL-RGVVYVGHLSDSRVEQNRAQLK 743

Query: 592  VIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVC 645
             +K G E + L++  +E + +  LS K SL+  A++  LP    D      +S  +GYV 
Sbjct: 744  KLKIGSELEGLVIDKDERTRVFNLSCKKSLMKDAEKSLLPLNYQDVKQRGNHSPFNGYVK 803

Query: 646  NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
            ++ E G FV F G+  G    S AVD +   LS  +YV QSV + +L  + +  R  LS 
Sbjct: 804  SVSEKGVFVAFNGQFVGLVLPSYAVDSRDVSLSSKFYVNQSVSAFLLRTDDDNERFLLSF 863

Query: 706  KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG--SVIEGKVHESNDF 763
            K+     +  +   E   +     + QS       +K V  F +G  +  + K  + N  
Sbjct: 864  KEPKNEKSSKTPESERPAIN---PVDQS-------IKEVSEFALGKVTKAKVKAVKKNQL 913

Query: 764  GVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDL-- 811
             VV+S   H         D +  I   +   AT + G V+   ++     K+ + + +  
Sbjct: 914  NVVLSDNLHGRIDISEVFDKFEDIKDPKKPLATFKKGDVLDVKVIGFHDVKSHKFLPVSH 973

Query: 812  -SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYN 869
             S K V I+      S + +          KD+ V  ++   V  V ++ + L++ P   
Sbjct: 974  RSSKNVLIEL-----SAKPSSLAGVNHATIKDVKVGDSIVGFVNNVSKDIMWLTVSPSLK 1028

Query: 870  HSIGYASVSDYNTQ--KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
              I +  ++D N+Q     +  F  G ++   V+++                  T + S+
Sbjct: 1029 AKIDFFDLADENSQLGHGIEDSFPLGCALRTKVVSIDQDRN-------------TLSVSA 1075

Query: 928  KRAKKKSSYDV--GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 985
            +    K   D+  G  + A + +I    L L+ G    G    T+  DD S  ++++++N
Sbjct: 1076 RTHDIKGIKDINVGDCLPARLLKITDSYLLLELGENVRGVAFATDALDDYSKPLKDVYAN 1135

Query: 986  FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1045
             K    V+A++I+  +K D K      LS++         G+    E  D+  G  V G 
Sbjct: 1136 QK-NSIVSAKVIS-IDKDDGK----LNLSLRSEN---PRDGTAKTHE--DLKRGDVVRGL 1184

Query: 1046 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1105
            V K+  +   + +S  L+A  F+  S    S ++++++ F   ++V G V++ + +  +L
Sbjct: 1185 VKKITEKGIFIYLSSTLQA--FVPVSKLTDSFIKDWRKFFKPMQSVVGKVVNCDDDSHIL 1242

Query: 1106 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGR 1163
             + L+  +     + +   ND     I  G+I  G +  +     GL V++    ++ G 
Sbjct: 1243 -VTLKESEVNGELRILKSYND-----IKVGEIFEGAVKNVTD--FGLFVKLDNTVNVTGL 1294

Query: 1164 VHFTELKNICVSDPLSGYDEG 1184
             H TE+ +  V D  S +  G
Sbjct: 1295 AHKTEVADSAVGDLASIFGVG 1315


>gi|212530734|ref|XP_002145524.1| rRNA biogenesis protein RRP5, putative [Talaromyces marneffei ATCC
            18224]
 gi|210074922|gb|EEA29009.1| rRNA biogenesis protein RRP5, putative [Talaromyces marneffei ATCC
            18224]
          Length = 1807

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 367/1391 (26%), Positives = 663/1391 (47%), Gaps = 174/1391 (12%)

Query: 505  YHVGQVVKCRIMSSIPASRRINLSFMMK----PTRVSEDDLVKLGSLVSGVVD--VVTPN 558
            +  G   K RI+          LSF  K    P    ED  V LG +V G ++  ++ P 
Sbjct: 500  FKTGSKHKARIIGYNSVDNLYLLSFEKKVIDQPYIRLED--VPLGEVVKGKIEKLLIGPE 557

Query: 559  AV--VVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 614
             +  ++  IA G + G +P+ H AD  L+H    +   + G     ++L ++ +   + L
Sbjct: 558  GIDGLILSIADGIT-GLVPSMHFADTVLQHP---EKKFREGLTVSARVLSVNLDKRQMRL 613

Query: 615  SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 674
            + K SL+NS   +  D + I P     G + NI   G  V+F G +  F P S+  +   
Sbjct: 614  TLKKSLLNSDSAIWKDYNDIVPGKQSPGTLINIQPNGATVQFYGTVRAFLPVSEMSEAYI 673

Query: 675  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 734
             D S+ +  GQ V  + + V++   ++ +S K     ST +   +E F  E +  +L   
Sbjct: 674  KDPSQHFRKGQVVNVHAISVDTAAEKLVVSCKDP---STSSEAYREAFG-EIRPGVL--- 726

Query: 735  KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV 794
                     V G +     +  + + + +GV         V G       A A V  G  
Sbjct: 727  ---------VTGTVFEKSSDDLLLKLDKYGVTARLSAIHLVDGDAAKAASAFAKVRVGQK 777

Query: 795  I-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 853
            +    +L+  +  RL+ ++ K+          S R+A KK       ++L V   +   V
Sbjct: 778  LSDLLVLEAKRVHRLIKVTHKS----------SLRKALKKNSLPATFEELEVGTEITGFV 827

Query: 854  E-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 912
              I      V  L   N  +    V D +  K P       QS+ ATV  +   +   R 
Sbjct: 828  RGITSHGIFVEFLGGLNGLLPRRLVDDEHANK-PDFGLYRSQSLTATVHQIDEDNR--RF 884

Query: 913  LLLLKAISETETSSSKRAKKK-------------------SSYDVGSLVQAEITEIKPLE 953
             L ++ +     S  +++K+K                   + + +G + +A I  IK  +
Sbjct: 885  TLTMRPLELPTGSRPEQSKEKPLPEDEKLANPVDESIHTAADFTIGKVTKARIASIKETQ 944

Query: 954  LRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK----- 1002
            + +       GRI ++EV D   ++ +       F++ + +  RI+    A+S++     
Sbjct: 945  INVVLADNLQGRIDVSEVFDKWDDIKDRKQPLQKFRVKEILPVRILGLHDARSHRFLPIS 1004

Query: 1003 PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHL 1062
                K  ++ELS KPS ++ +E    L  E+  V +G  + G+V  V N++  +++S ++
Sbjct: 1005 HRTSKHPVYELSAKPSFISSAE-PKPLTLEQ--VKVGSSMIGFVNNVANDYLWVSLSPNV 1061

Query: 1063 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1122
            + ++  +D + + S L + +  + +G A+   V  I+ +K  L L ++      S    D
Sbjct: 1062 RGRVRAIDLSDDLSTLADLESNYPVGSALKVRVTGIDLDKGHLDLSVK------SGSARD 1115

Query: 1123 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1182
            +S D +      G I+ GR++K+      +++Q+   L G V+ T++     +D  S  D
Sbjct: 1116 LSFDKLS----RGMILPGRVTKVTEK--QIIMQLSDTLVGAVNLTDM-----ADDYSKID 1164

Query: 1183 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1242
                   + Y + + ++  ++++ ++ +  F   LSLR S           LS+ +    
Sbjct: 1165 ------TTIYKKNEILRACIIDLDKSKKKIF---LSLRPS---------KVLSSTLPVRD 1206

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            + +  ++ L PN +V+G+V+ V   G F+ L   + A + +S+LSD +++  + EF   +
Sbjct: 1207 REITSMDQLKPNDVVRGFVRRVADNGLFVTLGHNVSAYIRISDLSDSFLKEWKDEFQTDQ 1266

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
            LV GR++ V+  + R++++LK S      ++ I  + +L VG +V G++++VE +G FI 
Sbjct: 1267 LVKGRIILVDSENNRLQMSLKESVLDPNFKTPIT-IRDLKVGQVVTGKVRKVEDFGAFIV 1325

Query: 1363 IENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            I+ + N+ GLCH S+++E +V +   ++ AG+ VK KILK+D  + ++S G+K+SYF  D
Sbjct: 1326 IDGSANVSGLCHRSQMAEQNVQDARKLFEAGDIVKAKILKIDANQGKVSFGLKASYF-GD 1384

Query: 1422 ADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVP 1481
             +        + D +++E G       L++   + +DM +   D       + ES     
Sbjct: 1385 EEGSDSEGGSDGDLSMDEAGGVE----LDSDEDSDEDMSVGGVDIEDASEDEDESSDDEE 1440

Query: 1482 PLEVNLDDEQPDM------------DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQ 1529
                 +   Q D             D G+S     TD     DE +N     K+K  R+ 
Sbjct: 1441 DASATVKRSQSDKGGLDVGGFDWTGDAGLSSTSKLTDRQAVGDEASN-----KKKRIRKP 1495

Query: 1530 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            EI+  +   L+   P++  ++ERL+   P+SS +W++YMAF L + +V KAR I +RA++
Sbjct: 1496 EIQVDQTGDLDARGPQSVADYERLLLGEPDSSLLWLQYMAFQLELGEVVKAREIGQRAIR 1555

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
            +I+I ++ EKLNIWVA  NLEN YG   ++++ +VF+ A QY D ++++  L+ +Y ++ 
Sbjct: 1556 SISIGQDTEKLNIWVALLNLENTYGT--DDSLEEVFKNACQYNDTQEIYERLISIYIQSG 1613

Query: 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQRLL---KQQQEGVQAVVQRALLSLPRHKHIKF 1706
            +N+ ADEL    +KK  +S + +       L       +  + ++ RAL SLP + H+  
Sbjct: 1614 KNEKADELFKTALKKKVYSGQKFFVNYATFLFDTLSSPDRGRDLLPRALQSLPPNTHVDT 1673

Query: 1707 ISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1764
              +   LEF+  +G  +RGR++FEG+LS +PKRTDLW+I LD E++ GD D +R +F+R 
Sbjct: 1674 TCKFIQLEFRSPSGDVERGRTLFEGLLSSFPKRTDLWNILLDLEMKQGDADQVRSVFQRV 1733

Query: 1765 ISLS------------------------LPPKKMKFLFKKYLEYEKSV----GEEERIEY 1796
            + +S                        L PKK +F FKK+L++E+ +    G E+ +E 
Sbjct: 1734 LGISTAPKTQSKKKGAIPAPSSTEAQKKLKPKKARFFFKKWLDFEEKLAAEGGNEKMVEE 1793

Query: 1797 VKQKAMEYVES 1807
            VK +A +YV S
Sbjct: 1794 VKARAADYVNS 1804



 Score =  197 bits (500), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 297/1311 (22%), Positives = 557/1311 (42%), Gaps = 132/1311 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILD---------NEIE 51
            + ++ G  + G V  +N  D+ + LP  L G   L   ++  D  ++         +++E
Sbjct: 154  KRLTIGTMVLGQVTSINSHDIGLALPNNLTGYVPLTAISETFDKKIEKVLNAEDDGDDVE 213

Query: 52   ANEDNLLPT-IFHVGQLVSCIVLQLDDDKKEIG--KRKIWLSLRLSLLYKGLSLETVQEG 108
            + ED+L P+  F++GQ +   V    +   + G  K+KI L+L       GL+   + EG
Sbjct: 214  SEEDSLDPSDYFYIGQYLRAYVTSTGNSSADPGANKKKIELTLDPRQTNSGLAESDLVEG 273

Query: 109  MVLTAYVKSIEDHGYILHFGL-PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRK 167
            +++ A V S+EDHG ++  GL     GF+     A     +VK G +L  VV  ++ +R 
Sbjct: 274  VMVQASVTSVEDHGCVMDIGLGKKLKGFM-----ASTDDSNVKEGAVLLCVVTGVNASRT 328

Query: 168  VVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 227
            +  LSS     +   +      +I   +PG      + S+ E G++   +     T+D  
Sbjct: 329  IFQLSSKLQAAASPKSVLKSAPTIQAFLPGTAAEMLLTSVTETGLVGKIMGLLDATIDFV 388

Query: 228  HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLHNRAPPSHVK---- 281
            H      + +    Y    K+ ARI    P +    VG ++   +L  +   S  +    
Sbjct: 389  HSGANSGSFDLTTKYQLGAKIKARITCTFPAAEPFKVGASILENVLDWKRTLSTQEEDSP 448

Query: 282  -VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVR 339
             +G I D  KV  V+ GLGL  +  S       +++ +SD   E +   +  +K GS  +
Sbjct: 449  SIGTILD-VKVATVEPGLGLYAEFGSPKHIGFVHISRVSDGTVETISAEQGPFKTGSKHK 507

Query: 340  VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFP 394
             RI+G+  ++ L     +    +       DV  G VVKGK+    I  +   G I+   
Sbjct: 508  ARIIGYNSVDNLYLLSFEKKVIDQPYIRLEDVPLGEVVKGKIEKLLIGPEGIDGLILSIA 567

Query: 395  GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAIL 452
             G+  L P  H ++  +  P KKF+ G  +  RVL V    +++ +T KK+L+ S  AI 
Sbjct: 568  DGITGLVPSMHFADTVLQHPEKKFREGLTVSARVLSVNLDKRQMRLTLKKSLLNSDSAIW 627

Query: 453  SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 512
              Y +      + G +  I+ +G  V+FY  V+ F P SE+      +PS  +  GQVV 
Sbjct: 628  KDYNDIVPGKQSPGTLINIQPNGATVQFYGTVRAFLPVSEMSEAYIKDPSQHFRKGQVVN 687

Query: 513  CRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAK 567
               +S   A+ ++ +S    P+  SE        ++ G LV+G V   + + +++ +   
Sbjct: 688  VHAISVDTAAEKLVVS-CKDPSTSSEAYREAFGEIRPGVLVTGTVFEKSSDDLLLKLDKY 746

Query: 568  GYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSA 624
            G +   +   HL D     A    + ++ G +   LLVL+ +  + L+  + K SL  + 
Sbjct: 747  GVT-ARLSAIHLVDGDAAKAASAFAKVRVGQKLSDLLVLEAKRVHRLIKVTHKSSLRKAL 805

Query: 625  QQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK-TY 681
            ++  LP+    +   + + G+V  I   G FV FLG L G  PR + VD + A+      
Sbjct: 806  KKNSLPATFEELEVGTEITGFVRGITSHGIFVEFLGGLNGLLPR-RLVDDEHANKPDFGL 864

Query: 682  YVGQSVRSNILDVNSETGRITLSLK--QSCCSSTDASFMQEHFLLEEKIAM-LQSSKHNG 738
            Y  QS+ + +  ++ +  R TL+++  +    S      ++    +EK+A  +  S H  
Sbjct: 865  YRSQSLTATVHQIDEDNRRFTLTMRPLELPTGSRPEQSKEKPLPEDEKLANPVDESIHTA 924

Query: 739  SELKWVEGFIIGSVIEGKVHE----------SNDFGVVVSFEEHSDVYGFITHHQLAGAT 788
            ++      F IG V + ++            +++    +   E  D +  I   +     
Sbjct: 925  AD------FTIGKVTKARIASIKETQINVVLADNLQGRIDVSEVFDKWDDIKDRKQPLQK 978

Query: 789  VESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 846
                 ++   IL +  A++ R + +S +T     +  +         + K    + + V 
Sbjct: 979  FRVKEILPVRILGLHDARSHRFLPISHRTSKHPVYELSAKPSFISSAEPKPLTLEQVKVG 1038

Query: 847  QTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALP 904
             ++   V  V  +YL +SL P     +    +S D +T    +  +  G ++   V  + 
Sbjct: 1039 SSMIGFVNNVANDYLWVSLSPNVRGRVRAIDLSDDLSTLADLESNYPVGSALKVRVTGI- 1097

Query: 905  SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 964
                 G L L +K+ S  + S  K ++       G ++   +T++   ++ ++      G
Sbjct: 1098 -DLDKGHLDLSVKSGSARDLSFDKLSR-------GMILPGRVTKVTEKQIIMQLSDTLVG 1149

Query: 965  RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS- 1023
             +++T++ DD S +   +   +K  + + A II        KK F   LS++PS +  S 
Sbjct: 1150 AVNLTDMADDYSKIDTTI---YKKNEILRACIIDLDKS--KKKIF---LSLRPSKVLSST 1201

Query: 1024 ------EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSE 1077
                  EI S    +  DV     V G+V +V +    +T+  ++ A + I D     S 
Sbjct: 1202 LPVRDREITSMDQLKPNDV-----VRGFVRRVADNGLFVTLGHNVSAYIRISD--LSDSF 1254

Query: 1078 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI----- 1132
            L+E++  F   + V G ++ ++ E   L++ L+            + + N +T I     
Sbjct: 1255 LKEWKDEFQTDQLVKGRIILVDSENNRLQMSLKE----------SVLDPNFKTPITIRDL 1304

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
              G +V G++ K+      +V+    ++ G  H +++    V            D    +
Sbjct: 1305 KVGQVVTGKVRKVEDFGAFIVIDGSANVSGLCHRSQMAEQNVQ-----------DARKLF 1353

Query: 1193 DEGQFVKCKVLEI-SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1242
            + G  VK K+L+I +   + +F ++ S     +G  S   SD    +D  G
Sbjct: 1354 EAGDIVKAKILKIDANQGKVSFGLKASYFGDEEGSDSEGGSDGDLSMDEAG 1404


>gi|449302185|gb|EMC98194.1| hypothetical protein BAUCODRAFT_32189 [Baudoinia compniacensis UAMH
            10762]
          Length = 1803

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 381/1386 (27%), Positives = 664/1386 (47%), Gaps = 180/1386 (12%)

Query: 502  SSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVD--VVT 556
            S ++ V  V K RI++  P      +S    ++    +  +DL K+G +V G V+  ++ 
Sbjct: 513  SGLFKVDSVHKARIIAFNPIDNLYYVSLKQSVLDQAYLRLEDL-KVGEVVKGTVERLILG 571

Query: 557  PNAVVVYVIAK--GYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNL 612
                +  V+ K      G +P  H +D  L+H    +   + G+    ++L +D E  ++
Sbjct: 572  GKTGITGVLVKLSATITGLVPETHFSDAQLQHP---ERKFREGFPVQARVLSVDLEKRHV 628

Query: 613  LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 672
             L+ K SLI+   ++  D + + P     G + N++ +G  V+F G +  + P ++  +G
Sbjct: 629  RLTFKKSLIDREVEVWQDYNILKPGMEGTGTIVNLLPSGAAVQFFGNVRAWLPVAEMSEG 688

Query: 673  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 732
                + + + +GQ+V   IL VN+ET  + +S KQS             F  E++ A   
Sbjct: 689  YIERVEQHFRLGQTVNVRILSVNAETQEMKVSCKQSGL-----------FDAEQQEA--- 734

Query: 733  SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA-GATVES 791
                      W E    G ++ G V      G  V+ E  + + G I H  LA GA  ++
Sbjct: 735  ----------W-EAVSGGQLVSGSVTVKG--GESVTVELQNGLLGLIRHGHLADGAPTKA 781

Query: 792  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 851
             S    A+  +   + L DL      +   RE +       K    +A+K   + ++   
Sbjct: 782  DS----ALSRIRVGQNLTDL-----LVLGKRERSRQVLLSNKPSLVKAAKAGTLIRSFAD 832

Query: 852  IVE-IVKENYLVLSLPE------YNHSIGYASVSDYNTQKFPQKQF--LNGQSVIATVMA 902
            + E  V + ++    PE       N  +G    S   T K  +  F  L  Q+V   V+ 
Sbjct: 833  VREGAVAQGFVRNVTPEGVYVDFTNGIVGLVPKSQVGTDKVGKPAFGLLKEQTVHTWVLN 892

Query: 903  LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV--GSLVQAEITEIKPLELRLKFGI 960
            + ++    R    L    +T+  +     + + +DV  G +V+  I  IK  +L ++   
Sbjct: 893  IDTA----RERFTLSMREQTDKPAVADRAQTAVHDVTKGQIVKVMIASIKATQLNVRLAN 948

Query: 961  GFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIAKSNKPDMK---------KSF 1009
            G  GRI ++EV D   ++  N      FK  + + A+++   +  + +         K+ 
Sbjct: 949  GVQGRIDVSEVFDSWDDISNNKAPLQKFKPNEELEAKVLGLHDARNHRFLPISHRQGKAP 1008

Query: 1010 LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1069
            ++ELS K S   +++   +LL  +  V     +  +V    +    + +S +++ ++ ++
Sbjct: 1009 VFELSAKRSR--INDQSEQLLGLDSIVPNASYLA-FVNNHGDNCVWVNLSPNVRGRIALM 1065

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
            D + +   LQ+ ++ F IG A+   V +I+     L L  R   +    K + + +    
Sbjct: 1066 DLSDDAGMLQKVEKSFPIGCALQVTVKAIDLVSGRLDLTAR---NSTEQKALTLQD---- 1118

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
              I  G ++ GR++K+      + VQ+   L G V   E+ +         Y+  Q + L
Sbjct: 1119 --ISPGMVLPGRVTKVTERA--ITVQLSDTLAGPVPLVEMSD--------NYE--QLNVL 1164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
              Y +   V+  VL I    +  F   LSLR S           LS+ +      +  + 
Sbjct: 1165 Q-YRKNDIVRVCVLGIDTPNKKLF---LSLRPS---------KVLSSSLPVKDPQIASVS 1211

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L P  +V+G+VK+V  +G  + LS +LDA V +S+LSD YV+  +    I +LV GRV 
Sbjct: 1212 QLKPGDLVRGFVKHVGDRGVIVSLSPQLDAFVRISDLSDQYVKDWKSLVEIDQLVKGRVT 1271

Query: 1310 SVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            +V+  +K V+++LK S  D        IN+L+    G IV G++++VE +G FI I+NT 
Sbjct: 1272 AVDSETKNVQLSLKASHVDEDYVPPISINDLA---AGTIVTGKVRKVEDFGAFIDIDNTQ 1328

Query: 1368 --LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADN 1424
              L GLCH SE++   V+++  +Y AG+ VK K+L VD E R+ISLG+K+SYF + DA++
Sbjct: 1329 PRLSGLCHRSEVAAKRVEDVRKLYSAGDVVKAKVLSVDLEARKISLGLKASYFADVDAND 1388

Query: 1425 LQMSSEEESDEAIEEVGSYNRSSL-LENSSVAVQDMDMESEDGGSLVLAQIESRASVPPL 1483
              +++++  DEA  +VG      + L N     +D D++ ++                  
Sbjct: 1389 PGVAADDVEDEAASDVGGVGIDDVQLGNGPYGEEDEDVDPDN----------------IA 1432

Query: 1484 EVNLDDEQPDMDNGISQNQ----------------------GHTDEAKTIDEKNNRHAKK 1521
            +V++ D + D  +G+  ++                      G        D +      K
Sbjct: 1433 DVDVHDGRTDGIDGMGFDEETVSKPTSGLKTLGFDWNGDAFGSATNGAMSDSEPETSVTK 1492

Query: 1522 KEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1581
            K K  +  EI+      L+K  PR+  +FER +   PN S +WI+YMAF L +++V++AR
Sbjct: 1493 KRKRNKP-EIKVDMTGDLDKYGPRSESDFERQLLGQPNYSGLWIQYMAFQLQLSEVQRAR 1551

Query: 1582 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1641
             IAERAL+TINIRE +EK NIW+A+ NLE EYG+  E  V +VF +A Q  D  ++H  L
Sbjct: 1552 DIAERALRTINIRETDEKANIWIAWLNLEVEYGD--EARVEEVFAQACQVQDSLEMHEKL 1609

Query: 1642 LGLYERTEQNKLADELLYKMI--KKFKHSCKVWLRRVQRLLKQQQEGV--QAVVQRALLS 1697
              +Y  + ++K AD +  +++  K F+ S +VWL     L+ + ++ V  +A++ RAL S
Sbjct: 1610 ASIYIDSGKHKRADNIFERIVAHKAFRASPEVWLNYATFLMDRSRDPVRARALLTRALQS 1669

Query: 1698 LPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQE----IRL 1751
            +  ++H    ++ A LEF+  NG  +RGR++FEG+L+E+PK +  W +++D E     R+
Sbjct: 1670 IQMNEHRPLTAKFAGLEFRFLNGDPERGRTIFEGLLTEWPKWSSGWDMWVDLERSRLARV 1729

Query: 1752 GDVD-------LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804
            G  D        +R L+ER  +     ++ +F+FK++LE+E+  G  +  E VK  A EY
Sbjct: 1730 GPQDERAEAREKVRALYERMAAQKTKKRRARFVFKQWLEFEEKEGNGKGAERVKALAKEY 1789

Query: 1805 VESTLA 1810
            VES  A
Sbjct: 1790 VESQQA 1795



 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 305/1327 (22%), Positives = 554/1327 (41%), Gaps = 151/1327 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE-----------A 52
            +N++ G ++ G V  +  +D+ + LP  L G      A+  IL+  IE            
Sbjct: 143  KNLAVGSQVLGYVTAITARDIALALPNNLTGYV-PITAVSDILNARIERLLAEDERRADD 201

Query: 53   NEDNLLPTIFHVGQLVSCIVLQLDDDKK-EIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 111
            +ED  L  +F+VGQ +   V  +  ++     KR I L++  S +  GL  ++V    +L
Sbjct: 202  DEDVDLKRLFYVGQWLRATVRSVGSEQAGSKSKRHIELAIAPSQVNGGLDGDSVVVNSML 261

Query: 112  TAYVKSIEDHGYILHFGLPSFT--GFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKV 168
             A V+S+EDHG ++  GL   T  GF+ + +L     +  ++ G ++  +V       KV
Sbjct: 262  QAAVRSVEDHGVVMDLGLGDETVKGFVSKKDLGAGFKLGQLQEGQVMMCLVTGKSSNGKV 321

Query: 169  VYLSSDPDTVSK-CVTKDLKGIS----IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGT 223
            + LS D    S     K+   +S    ++  +PG  VS  V      GV+   +     T
Sbjct: 322  LKLSPDAARFSTHGAEKETPVVSEAPTVEAFLPGTAVSILVTDSGAGGVVGKVMGMVDVT 381

Query: 224  VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS---RAVGLTLNPYLLHNRAPPS-- 278
             D+ H        +    Y    K+  RI++  P +   R VG++L  ++L    P S  
Sbjct: 382  ADVMHSGAATKGADMSKKYKIGSKIYGRIVWTLPNADDGRRVGVSLLDHMLCLPPPTSRL 441

Query: 279  -----------------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTP-VSTPAYVTISDV 320
                             H+ +  I   +KVV +    G+ L++P+      PA+  IS V
Sbjct: 442  PEAASAKLRVQATQLEQHMPISAIIGDAKVVHLLSERGIFLELPTVAGQPAPAFAHISQV 501

Query: 321  AEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV 377
            ++  +  L      +K  S  + RI+ F  ++ L    LK S  +       D+K G VV
Sbjct: 502  SDTRIDVLSSSSGLFKVDSVHKARIIAFNPIDNLYYVSLKQSVLDQAYLRLEDLKVGEVV 561

Query: 378  KGKVIAV------DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
            KG V  +         G +V+    +  L P  H S+ ++  P +KF+ G  +  RVL V
Sbjct: 562  KGTVERLILGGKTGITGVLVKLSATITGLVPETHFSDAQLQHPERKFREGFPVQARVLSV 621

Query: 432  --KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 489
              + + + +T KK+L+  ++ +   Y      +   G I  +   G  V+F+  V+ + P
Sbjct: 622  DLEKRHVRLTFKKSLIDREVEVWQDYNILKPGMEGTGTIVNLLPSGAAVQFFGNVRAWLP 681

Query: 490  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLG 545
             +E+           + +GQ V  RI+S    ++ + +S        +E     + V  G
Sbjct: 682  VAEMSEGYIERVEQHFRLGQTVNVRILSVNAETQEMKVSCKQSGLFDAEQQEAWEAVSGG 741

Query: 546  SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL-EHATVMKSVIKPGYEFDQLLV 604
             LVSG V V    +V V +  +    G I   HLAD     A    S I+ G     LLV
Sbjct: 742  QLVSGSVTVKGGESVTVEL--QNGLLGLIRHGHLADGAPTKADSALSRIRVGQNLTDLLV 799

Query: 605  LDN--ESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
            L     S  +LLS K SL+ +A+   L    + +   +V  G+V N+   G +V F   +
Sbjct: 800  LGKRERSRQVLLSNKPSLVKAAKAGTLIRSFADVREGAVAQGFVRNVTPEGVYVDFTNGI 859

Query: 661  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
             G  P+S+    +    +      Q+V + +L++++   R TLS+++       A   Q 
Sbjct: 860  VGLVPKSQVGTDKVGKPAFGLLKEQTVHTWVLNIDTARERFTLSMREQTDKPAVADRAQT 919

Query: 721  --HFLLEEKI--AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 776
              H + + +I   M+ S K     ++   G      ++G++  S  F          D +
Sbjct: 920  AVHDVTKGQIVKVMIASIKATQLNVRLANG------VQGRIDVSEVF----------DSW 963

Query: 777  GFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKK 834
              I++++      +    ++A +L +  A+  R + +S +      F  +     A++ +
Sbjct: 964  DDISNNKAPLQKFKPNEELEAKVLGLHDARNHRFLPISHRQGKAPVFELS-----AKRSR 1018

Query: 835  RKREASKDLGVHQTVN-----AIVEIVKENYLVLSL-PEYNHSIGYASVSDYNT--QKFP 886
               ++ + LG+   V      A V    +N + ++L P     I    +SD     QK  
Sbjct: 1019 INDQSEQLLGLDSIVPNASYLAFVNNHGDNCVWVNLSPNVRGRIALMDLSDDAGMLQKV- 1077

Query: 887  QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 946
            +K F  G ++  TV A+     +GRL L  +       S+ ++A        G ++   +
Sbjct: 1078 EKSFPIGCALQVTVKAI--DLVSGRLDLTAR------NSTEQKALTLQDISPGMVLPGRV 1129

Query: 947  TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1006
            T++    + ++      G + + E++D+   +  N+    K    +    +   + P+ K
Sbjct: 1130 TKVTERAITVQLSDTLAGPVPLVEMSDNYEQL--NVLQYRK--NDIVRVCVLGIDTPN-K 1184

Query: 1007 KSFLWELSIKPSMLTVSEIGSK--LLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKA 1064
            K F   LS++PS +  S +  K   +     +  G  V G+V  V +   ++++S  L A
Sbjct: 1185 KLF---LSLRPSKVLSSSLPVKDPQIASVSQLKPGDLVRGFVKHVGDRGVIVSLSPQLDA 1241

Query: 1065 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1124
              F+  S      +++++    I + V G V +++ E K ++L L+       D    IS
Sbjct: 1242 --FVRISDLSDQYVKDWKSLVEIDQLVKGRVTAVDSETKNVQLSLKASHVD-EDYVPPIS 1298

Query: 1125 NDNMQTFIHEGDIVGGRISKILS-GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
             +++      G IV G++ K+   G    +    P L G  H +E+    V         
Sbjct: 1299 INDLAA----GTIVTGKVRKVEDFGAFIDIDNTQPRLSGLCHRSEVAAKRVE-------- 1346

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
               D    Y  G  VK KVL +    R     ++SL     G+ ++  +D+  D + PG 
Sbjct: 1347 ---DVRKLYSAGDVVKAKVLSVDLEAR-----KISL-----GLKASYFADV--DANDPGV 1391

Query: 1244 HLEKIED 1250
              + +ED
Sbjct: 1392 AADDVED 1398



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 102/462 (22%), Positives = 196/462 (42%), Gaps = 67/462 (14%)

Query: 967  HITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG 1026
            HI++V+D + +V+ +    FK+     ARIIA  N  D     L+ +S+K S+L      
Sbjct: 497  HISQVSDTRIDVLSSSSGLFKVDSVHKARIIA-FNPIDN----LYYVSLKQSVL------ 545

Query: 1027 SKLLFEECDVSIGQRVTGYVYK--VDNEWALLTISRHLKAQL--FILDSAYEPSELQEFQ 1082
             +      D+ +G+ V G V +  +  +  +  +   L A +   + ++ +  ++LQ  +
Sbjct: 546  DQAYLRLEDLKVGEVVKGTVERLILGGKTGITGVLVKLSATITGLVPETHFSDAQLQHPE 605

Query: 1083 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND-NMQTFIHEGDIVGGR 1141
            R+F  G  V   VLS++ EK+ +RL    F+  + D+ V++  D N+     EG    G 
Sbjct: 606  RKFREGFPVQARVLSVDLEKRHVRLT---FKKSLIDREVEVWQDYNILKPGMEGT---GT 659

Query: 1142 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG-YDEGQFVKC 1200
            I  +L    G  VQ     +G        N+    P++   EG  + +   +  GQ V  
Sbjct: 660  IVNLLP--SGAAVQ----FFG--------NVRAWLPVAEMSEGYIERVEQHFRLGQTVNV 705

Query: 1201 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1260
            ++L ++   +     E+ +     G+                +  E  E +S   +V G 
Sbjct: 706  RILSVNAETQ-----EMKVSCKQSGLFDA-------------EQQEAWEAVSGGQLVSGS 747

Query: 1261 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK-EFPIGKLVAGR------VLSVEP 1313
            V     +   + L   L   +   +L+DG   +P K +  + ++  G+      VL    
Sbjct: 748  VTVKGGESVTVELQNGLLGLIRHGHLADG---APTKADSALSRIRVGQNLTDLLVLGKRE 804

Query: 1314 LSKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
             S++V ++ K S  + A     I + +++  G +  G ++ V   G+++   N  +VGL 
Sbjct: 805  RSRQVLLSNKPSLVKAAKAGTLIRSFADVREGAVAQGFVRNVTPEGVYVDFTN-GIVGLV 863

Query: 1373 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              S++  D V          + V   +L +D  + R +L M+
Sbjct: 864  PKSQVGTDKVGKPAFGLLKEQTVHTWVLNIDTARERFTLSMR 905


>gi|326471469|gb|EGD95478.1| rRNA biogenesis protein RRP5 [Trichophyton tonsurans CBS 112818]
          Length = 1827

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 382/1412 (27%), Positives = 658/1412 (46%), Gaps = 186/1412 (13%)

Query: 485  QGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 541
            QGF   S L        SSM   Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 508  QGFVHLSRLADGRVDSISSMEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 564

Query: 542  VKL-----GSLVSGVVD--VVTPNAVVVYVIA-KGYSKGTIPTEHLAD-HLEHATVMKSV 592
             +L     GS+V G ++  ++ P  +   +++      G +P  H+AD  L+H    +  
Sbjct: 565  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDNISGLVPEMHMADTKLQHP---EKK 621

Query: 593  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 651
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 622  FREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 681

Query: 652  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 682  AIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLVVSCKDPSTV 741

Query: 712  STD--ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
            + D  ++F + H                            G V+ G V E +   +++  
Sbjct: 742  TADYQSAFEKVH---------------------------PGLVVSGTVFEKSSDDLLIKL 774

Query: 770  EEHSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFID 819
            ++   +    ++H   G++ +  S               +  V K+ RL++++ K     
Sbjct: 775  QDSGLIARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKVKKSHRLIEVTNKATL-- 832

Query: 820  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVS 878
                    ++A  + R     +D+     V  +V+ I+ E   V  L      I    V 
Sbjct: 833  --------KKAAAEGRLPAKFEDIKHGLKVTGVVKNIIPEGIFVEFLDNLTGLIPKRLVD 884

Query: 879  DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYD 937
            D +  + P   +   Q + ATV A+   S   R LL LK +S+  E S S  A +K +  
Sbjct: 885  DDHASR-PDFGYSRFQVISATVCAVQEDSD--RFLLSLKPVSKPKEQSDSNPASEKKAPA 941

Query: 938  V------------------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV 979
            V                  G + +A+IT +K  +L +       GRI I+E+ D   ++ 
Sbjct: 942  VVLNNPIDEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIK 1001

Query: 980  ENL--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSK 1028
            +      +F     +  R++   +  + K         K  ++ELS K S L  SE    
Sbjct: 1002 DRKRPLKSFHSKDILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEF-KP 1060

Query: 1029 LLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIG 1088
            L  E+  + +G R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG
Sbjct: 1061 LHLEQ--LKVGDRHIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIG 1118

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1148
             A+   V+ I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI   
Sbjct: 1119 SALQVAVIGIDAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR 1169

Query: 1149 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1208
               ++VQI  ++ G +   ++ +          D  + +P + + + + ++  V+++   
Sbjct: 1170 --QVLVQINDNVVGAISLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIP 1216

Query: 1209 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1268
             +    +  S+R S           LS+ +      +  I++L    IV+G+++ V + G
Sbjct: 1217 NK---KISFSVRPS---------KVLSSSLPVVDPEITSIDNLKVGQIVRGFIRRVDNIG 1264

Query: 1269 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
             F+ L   + A + +S+LSD +++  + EF + +LV GR+  V+  + ++++TLK S   
Sbjct: 1265 VFVTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLKKSVLD 1324

Query: 1329 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIET 1387
               +     L  L VG IV G++++VE YG FI I+ + NL GLCH SE++E  V++   
Sbjct: 1325 PNYKPPFT-LKELKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQ 1383

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE--AIEEVGSYNR 1445
            +Y   + VK K+LKVD EK +I+LG+K+SYF++         EEESD   + +E G    
Sbjct: 1384 LYEKDDIVKAKVLKVDLEKGQIALGLKASYFRD-------LPEEESDANCSDDEAGGI-- 1434

Query: 1446 SSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN---- 1501
              +L+    +  D+ M   D       + E            +        G+  +    
Sbjct: 1435 --MLDAGGDSDDDVSMGGVDLEGEDDEEGEEEEDSDEDIEMENAPDSTKKGGLVTSGFDW 1492

Query: 1502 --QGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1559
               G  D+ +  DE        K K+ R+ EI+      L+ + P++  ++ERL+   P+
Sbjct: 1493 TGDGDKDQNEAADESAEDDGATKRKKRRKAEIQVDRTGDLDANGPQSVADYERLLLGEPD 1552

Query: 1560 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619
            SS +W+KYMAF L + +V+KAR IA+RAL+T++I ++ EKLN+WVA  NLEN +GN  ++
Sbjct: 1553 SSLLWLKYMAFQLELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLNLENTFGN--DD 1610

Query: 1620 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1679
             + +VF+ A +Y D  +++  +  ++ ++ + + ADEL    +KK   S   +       
Sbjct: 1611 TLDEVFKSACEYNDAHEIYDRMTSIFIQSGKAEKADELFQTALKKKVSSTPDFFLNYANF 1670

Query: 1680 LKQQQEGVQA---VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEY 1734
            L    E  Q    ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +
Sbjct: 1671 LFDTMEAPQRGRDLLHRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERGRTVFEGLLSSF 1730

Query: 1735 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLF 1778
            PKR DLW++ LD EI++GD + +R LFER + +                 L  K+ KFLF
Sbjct: 1731 PKRIDLWNVLLDLEIKVGDEEQVRRLFERVLGIGHGIVAADGTKGGPKKKLKEKQAKFLF 1790

Query: 1779 KKYLEYEKSV---GEEERIEYVKQKAMEYVES 1807
            KK+L +E+ +   G+ + ++ VK +A +YV S
Sbjct: 1791 KKWLAFEEKIAPEGDTKMVDEVKARAADYVRS 1822



 Score =  205 bits (522), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 301/1285 (23%), Positives = 539/1285 (41%), Gaps = 135/1285 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL------ 57
            + ++ G ++ G V+ +   D+ + LP  L G     +A+   L  ++EA   +       
Sbjct: 166  KRLAVGSRILGQVSSIGLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDED 224

Query: 58   -------------LPTIFHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLS 101
                         L     VGQ +   V      +DDKK   K+ I LS+       GL+
Sbjct: 225  DDDDDDDDDDDLELKNYVKVGQYLRAAVTATTRNEDDKKVKNKKHIELSIEPHAANSGLT 284

Query: 102  LETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQ 156
               +     + A V S+EDHG ++  GL      GF+    L   +GID   VK G +  
Sbjct: 285  KADMVVNATVQASVISVEDHGLVMDLGLEENEAKGFISSRELP--AGIDISTVKEGSVFL 342

Query: 157  GVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVML 214
             +V   + +  V+ LS+D  + +            +I+  +PG      +  +   G++ 
Sbjct: 343  CIVTGQNASGTVIKLSADLSSAASVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIG 402

Query: 215  SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAV--GLTLNPYLLH 272
              +      VD+ H   +    +    Y+   K+  R++   P+S  V  G ++   +L 
Sbjct: 403  KIMGMLDAVVDVIHSGASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLK 462

Query: 273  NRAPPSHVKVGD--------IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE-- 322
                 + V  GD        I  + KV  VD  LGL + + ST      +V +S +A+  
Sbjct: 463  FSPTATLVNGGDDDLPLISDIIPEVKVTYVDTSLGLYVQLGST--KHQGFVHLSRLADGR 520

Query: 323  -EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 381
             + +  +E  YK GS    RI+GF  ++ L    L+    E   F   DV  G VVKGK+
Sbjct: 521  VDSISSMEGPYKVGSTHEGRIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKI 580

Query: 382  ----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSK 434
                I  +   G IV     +  L P  HM++ ++  P KKF+ G ++  R+L V  + +
Sbjct: 581  EKLLIKPEGINGLIVSLTDNISGLVPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKR 640

Query: 435  RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 494
            ++ +T KK+L+ S  A    Y   +    + G + KI+ +G  V+FY  V+GF P SE+ 
Sbjct: 641  QLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMS 700

Query: 495  LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVS 549
                 +PS  + VGQVV    ++    + R+ +S    P+ V+ D     + V  G +VS
Sbjct: 701  EAYIKDPSQHFTVGQVVNVHALTVDAENERLVVS-CKDPSTVTADYQSAFEKVHPGLVVS 759

Query: 550  GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE 608
            G V   + + +++ +   G     + + H++D      T   + I+ G + D LLV   +
Sbjct: 760  GTVFEKSSDDLLIKLQDSGLI-ARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKVK 818

Query: 609  SSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 664
             S+ L+  + K +L  +A +  LP+    I     V G V NII  G FV FL  LTG  
Sbjct: 819  KSHRLIEVTNKATLKKAAAEGRLPAKFEDIKHGLKVTGVVKNIIPEGIFVEFLDNLTGLI 878

Query: 665  PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK-----QSCCSSTDASFMQ 719
            P+    D   +     Y   Q + + +  V  ++ R  LSLK     +    S  AS   
Sbjct: 879  PKRLVDDDHASRPDFGYSRFQVISATVCAVQEDSDRFLLSLKPVSKPKEQSDSNPAS--- 935

Query: 720  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND--FGVV--------VSF 769
                 E+K   +  +     ELK +E  ++G + + K+    D    VV        +  
Sbjct: 936  -----EKKAPAVVLNNPIDEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDI 990

Query: 770  EEHSDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSN 827
             E  D +  I   +    +  S  ++   +L +  A+  + + +S ++  +  +  +   
Sbjct: 991  SEIFDSWEDIKDRKRPLKSFHSKDILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKR 1050

Query: 828  RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKF 885
               Q  + K    + L V       V  + E+ L L++ P     +    +S D + +  
Sbjct: 1051 SCLQASEFKPLHLEQLKVGDRHIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGN 1110

Query: 886  PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 945
             QK F  G ++   V+ + +     RL L  +  S  +T +     K      G ++   
Sbjct: 1111 IQKNFPIGSALQVAVIGIDAEKN--RLDLSARIGSSAKTLTVADLSK------GMILVGR 1162

Query: 946  ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1005
            +T+I   ++ ++      G I + ++ DD + V     +NF   + +   ++   + P+ 
Sbjct: 1163 VTKITDRQVLVQINDNVVGAISLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNK 1218

Query: 1006 KKSFLWELSIKPSMLTVSEIG--SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1063
            K SF    S++PS +  S +      +    ++ +GQ V G++ +VDN    +T+   + 
Sbjct: 1219 KISF----SVRPSKVLSSSLPVVDPEITSIDNLKVGQIVRGFIRRVDNIGVFVTLGHDVT 1274

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A  +I  S    S L+E++  F + + V G +  ++KE   +++ L+        K+V  
Sbjct: 1275 A--YIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLK--------KSVLD 1324

Query: 1124 SNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1180
             N      + E   G IV G++ K+      + +    +L G  H +E+    V D    
Sbjct: 1325 PNYKPPFTLKELKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT-- 1382

Query: 1181 YDEGQFDPLSGYDEGQFVKCKVLEI 1205
                Q      Y++   VK KVL++
Sbjct: 1383 ----QL-----YEKDDIVKAKVLKV 1398


>gi|297301793|ref|XP_001105950.2| PREDICTED: protein RRP5 homolog [Macaca mulatta]
          Length = 1858

 Score =  399 bits (1024), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 380/1400 (27%), Positives = 643/1400 (45%), Gaps = 166/1400 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +  +  VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIIEKVKGSGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  +     + L+ P              G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEEISCFLILVTP-------------FGLTLNFLTFFTGVVDFMHLDP 302

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 303  KKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDD 357

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 358  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 414

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 415  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLAD 474

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L THG
Sbjct: 475  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHG 534

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 535  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERML 594

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 595  LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 653

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S I
Sbjct: 654  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEI 713

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 714  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 773

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIG 750
            + E  R+ LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +     G
Sbjct: 774  DEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPG 833

Query: 751  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
              ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V
Sbjct: 834  MFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEV 893

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  
Sbjct: 894  HVSLHQDLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETG 935

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 936  HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPT 993

Query: 929  RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 994  RKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHAS 1053

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKP 1017
             + DD    +    +  K+G+TVTAR+I      DMK   FL            ELS++P
Sbjct: 1054 HILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSVRP 1109

Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            S L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L 
Sbjct: 1110 SELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1169

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1130
            ++     L+   ++F +G+A+   V+  +  K  L L L             I    ++ 
Sbjct: 1170 TSLSFKVLKHPDKKFRVGQALRATVIGPDSSKAFLCLSL-------------IGPHKLE- 1215

Query: 1131 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
               EG++  GR+ K+     GL V      +G++    +    VSD    Y E    PL 
Sbjct: 1216 ---EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI--FHVSD---SYSE---TPLE 1260

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
             +   + V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I+D
Sbjct: 1261 DFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQD 1307

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGR 1307
            +    +++GYV ++   G F  L   +      S++S           K  P GKL+  R
Sbjct: 1308 IKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHLPEGKLLTAR 1367

Query: 1308 VLSVEPLSKRVEVTLKTSDS 1327
            VL +      VE++    D+
Sbjct: 1368 VLRLNHQKNLVELSFLPGDT 1387



 Score =  293 bits (750), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1563
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1549 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1608

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1609 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1666

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1683
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1667 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1726

Query: 1684 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1727 QAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1786

Query: 1743 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1787 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1846

Query: 1803 EYVES 1807
            EYVE+
Sbjct: 1847 EYVEA 1851



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 57/337 (16%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 312  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 371

Query: 1144 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 372  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 408

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 409  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 448

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 449  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 508

Query: 1323 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 509  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 563

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 564  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 600



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 189/469 (40%), Gaps = 58/469 (12%)

Query: 954  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1011
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 371  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 418

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 419  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 472

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 473  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGL 530

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 531  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 573

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            Y  GQ VK  VL          + E S    L  +S   SSD     +  G   +K + +
Sbjct: 574  YT-GQVVKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAI 620

Query: 1252 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1308
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 621  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 679

Query: 1309 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            L +      V +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 680  LCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 738

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 739  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 787



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1184 FRVGQALRATVIGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1235

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1236 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1291

Query: 1332 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1384
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1292 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1349

Query: 1385 IETIYRA----GEKVKVKILKVDKEKRRISL 1411
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1350 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1380


>gi|355783073|gb|EHH64994.1| hypothetical protein EGM_18331 [Macaca fascicularis]
          Length = 1873

 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 383/1405 (27%), Positives = 648/1405 (46%), Gaps = 161/1405 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIIEKVKGNGGVVSL 255

Query: 172  S--SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 229
            S     +T S  +   +  I  D +   +     +  +   G+ L+FLT+FTG VD  HL
Sbjct: 256  SVGHSEETASAGIVLPVSFIGRDNVALSVYCEQCLTFVTPFGLTLNFLTFFTGVVDFMHL 315

Query: 230  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIY 286
                  T + N     + V A IL V P +R V L+L P  L    P + +    +G + 
Sbjct: 316  DPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVL 370

Query: 287  DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 346
            D   V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ + 
Sbjct: 371  DDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYS 427

Query: 347  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 406
             ++ LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+
Sbjct: 428  QMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 487

Query: 407  SEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            ++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L T
Sbjct: 488  ADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQT 547

Query: 465  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            HG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R
Sbjct: 548  HGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKER 607

Query: 525  INLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 574
            + LSF +        +P   S+     + +G LV   V   T + + V V+     +  +
Sbjct: 608  MLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFL 666

Query: 575  PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDAS 632
            PT HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S
Sbjct: 667  PTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFS 726

Query: 633  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
             IHP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + 
Sbjct: 727  EIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVT 786

Query: 693  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFI 748
            +V+ E  R+ LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +    
Sbjct: 787  NVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMT 846

Query: 749  IGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 807
             G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   + 
Sbjct: 847  PGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKL 906

Query: 808  LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 867
             V +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E
Sbjct: 907  EVHVSLHQDLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVE 948

Query: 868  YNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS 926
              H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T  
Sbjct: 949  TGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMR 1006

Query: 927  SKRAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 967
              R                     KK +  +G +V   +  IKP  + +    G  G IH
Sbjct: 1007 PTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIH 1066

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSI 1015
             + + DD    +    +  K+G+TVTAR+I      DMK   FL            ELS+
Sbjct: 1067 ASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSV 1122

Query: 1016 KPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFI 1068
            +PS L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +
Sbjct: 1123 RPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPL 1182

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            L ++     L+   ++F +G+A+   V+  +  K  L L L             I    +
Sbjct: 1183 LLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKL 1229

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            +    EG++  GR+ K+     GL V      +G++    +    VSD    Y E    P
Sbjct: 1230 E----EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI--FHVSD---SYSE---TP 1273

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
            L  +   + V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I
Sbjct: 1274 LEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSI 1320

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGK 1302
            +D+    +++GYV ++   G F  L   +   V L+  S     SP K+       P GK
Sbjct: 1321 QDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGK 1377

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDS 1327
            L+  RVL +      VE++    D+
Sbjct: 1378 LLTARVLRLNHQKNLVELSFLPGDT 1402



 Score =  291 bits (745), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1563
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1564 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1623

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1624 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1681

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1683
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1682 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRG 1741

Query: 1684 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742
            Q G    ++QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1742 QAGASHRMLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1801

Query: 1743 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1802 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1861

Query: 1803 EYVES 1807
            EYVE+
Sbjct: 1862 EYVEA 1866



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 57/337 (16%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 327  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 386

Query: 1144 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 387  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 423

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 424  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 463

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 464  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 523

Query: 1323 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 524  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 578

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 579  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 615



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 190/469 (40%), Gaps = 58/469 (12%)

Query: 954  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1011
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 386  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 433

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
             LS++ S++    +         D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 434  LLSLRTSIIEAQYLRYH------DIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 487

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 488  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGL 545

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 546  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 588

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            Y  GQ VK  VL          + E S    L  +S   SSD     +  G   +K + +
Sbjct: 589  YT-GQVVKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAI 635

Query: 1252 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1308
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 636  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 694

Query: 1309 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            L +      V +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 695  LCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 753

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 754  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 802



 Score = 41.2 bits (95), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1199 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1250

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1251 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1306

Query: 1332 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1384
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1307 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPS 1364

Query: 1385 IETIYRA----GEKVKVKILKVDKEKRRISL 1411
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1365 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1395


>gi|164425200|ref|XP_962876.2| hypothetical protein NCU06272 [Neurospora crassa OR74A]
 gi|157070830|gb|EAA33640.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1774

 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 386/1404 (27%), Positives = 669/1404 (47%), Gaps = 195/1404 (13%)

Query: 483  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTR 535
            GV GF   S +    +D   E S  Y VG V   R++  ++      I+L  S + +P  
Sbjct: 465  GVSGFVHISRVKDGKVDALFENSGPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFL 524

Query: 536  VSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 590
              ED  + +G++VSGVV+ +  NA     ++  IA G S G +P  H AD HL++    +
Sbjct: 525  RIED--IPVGAVVSGVVEKMVVNAAGVGGLIVKIADGIS-GLVPEMHFADVHLQNP---E 578

Query: 591  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNI 647
               + G +   ++L  D  S  + L+ K +L+NS   LP+  S+  I       G + N+
Sbjct: 579  KKFREGLKVKARVLSTDAASRQIRLTLKKTLVNS--DLPAIQSYEQIAVGQQALGTIINV 636

Query: 648  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            ++ G  V+F GRL GF P S+  +    D  + + VGQ+V   ++  + +  ++ +S K 
Sbjct: 637  LQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKD 696

Query: 708  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 767
                          F LE+++A+ +                IG V+  KV +  D  V V
Sbjct: 697  PSA-----------FGLEKQLALKK--------------LQIGDVVSAKVTQKTDDDVFV 731

Query: 768  SFEEHSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLKTVF 817
               + S        H    +  ++ S ++            IL+  +A R + LS K   
Sbjct: 732  ELADSSLKAILPVAHLTDKSVSKTQSALKKIHVNQTLAELVILEKNEARRSIILSQKPSL 791

Query: 818  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYAS 876
            +   +E          +   E S   G  + + A    V+    L   LP+        S
Sbjct: 792  VKASKEGKFLTTLDGARVGDEVS---GYIRNITATAVFVQFGGKLTALLPK--------S 840

Query: 877  VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE----TETSSSKRA-- 930
            +     Q  P       QSV   + ++  ++   RL++ +   +E     ET   K A  
Sbjct: 841  MIPREDQDKPDFGMFKSQSVTVKITSV--NTELNRLVVAIPGAAEQVKKVETKGEKVANP 898

Query: 931  --KKKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLF 983
              +  ++ D   +G L +A I  +K  +L ++      GRI +++V D    +   +   
Sbjct: 899  VDESITTLDDISIGKLTKARIVSVKDTQLNVQLADNIQGRIDVSQVYDSWEQIKDTKKPL 958

Query: 984  SNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECD 1035
              F+  Q V  R++    A++++  P   +S   + ELS KPS +        L F+  +
Sbjct: 959  KRFQPNQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEGASSEPLSFD--N 1016

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            + +G    G+V  V      + +S  ++ ++  ++++ + S L    + F IG A+   V
Sbjct: 1017 LKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSALRVRV 1076

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1155
            +S++ E K L L  R    G  D   +++ D     I +  I+ G+I+K+      ++V+
Sbjct: 1077 VSVDAESKRLDLSAR--SPGSED---ELTWDK----IAQDVILVGKITKVDER--QVIVK 1125

Query: 1156 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1215
            +   L G VH  +L        +  Y+E   +P + + + + V+  V+E+ ++ +    +
Sbjct: 1126 LSESLAGPVHKVDL--------VDDYEEA--NP-AKFAKNEIVRVAVVEVDKSNK---RI 1171

Query: 1216 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1275
             LS R S           L++ +    K + +   L    IV+G+VKNV+ KG F+ L  
Sbjct: 1172 RLSTRPS---------RILNSSLPVKDKEITQNTKLEVGEIVRGFVKNVSDKGLFVTLGG 1222

Query: 1276 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1335
             + A V + NLSD Y++  +++F + +LV GR++SV   + R+E++LK S         +
Sbjct: 1223 TVTAFVQIKNLSDAYLKYWKEQFQVDQLVKGRIISVA--NGRIEMSLKPS-VVDKDYVPL 1279

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEK 1394
              +S+L  G  + G++++VE +G FI I+ + NL GLCH SE+S+  V +   +Y  G+K
Sbjct: 1280 TTISDLKEGQTITGRVRKVEEFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEGDK 1339

Query: 1395 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE----------------EESDEAIE 1438
            VK K+LKVD   +RI+LG+K SYF    D  +M  +                 ++D+A++
Sbjct: 1340 VKAKVLKVDITAKRINLGLKPSYFGEQDDEDEMDVDEEDAEDSEGDDSDEDMSDADDAVQ 1399

Query: 1439 EVGSYN----RSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM 1494
              G+ N         E S V + D D++  + G                     D    +
Sbjct: 1400 ITGTDNVEDESEDEDEASDVEMVDADVKGLEAGGF-------------------DWSASL 1440

Query: 1495 DNGISQNQGHTD-EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERL 1553
            ++G   N    D EA            KK+K  RE ++   +   L+ D P+T  ++ERL
Sbjct: 1441 EDGEKANASAADLEA----------LAKKKKARREPQVTVDKTASLDVDGPQTASDYERL 1490

Query: 1554 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1613
            +   PNSS +WI YMAF + ++D+  AR +AERA++TINI+EE EKLN+W+AY NLE  Y
Sbjct: 1491 LLGQPNSSQLWIAYMAFQMQVSDLAAARQVAERAIKTINIKEEIEKLNVWIAYLNLEVAY 1550

Query: 1614 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVW 1672
            GN  EE V +VF+RA  Y D ++VH  L  +Y ++ + K AD+L  K++K+F + S +VW
Sbjct: 1551 GN--EETVDEVFKRACTYNDKQEVHERLASIYIQSGKRKQADDLFEKIVKEFGYKSPEVW 1608

Query: 1673 LRRVQRL--LKQQQEGVQAVVQRA--LLSLPRHKHIKFISQTAILEFK--NGVADRGRSM 1726
            +     L       +  +A+++RA  +L    H ++  + + A LEF+  NG  ++GR++
Sbjct: 1609 VNYAHFLHTTAHSPDRARALLKRATQVLGKETHMYLALLPKFAALEFRSPNGDKEQGRTL 1668

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLE 1783
            FE +L+ YPK+ DLW+  +D E    D D  +IR LF+R   +  L P++ K  F+++ +
Sbjct: 1669 FENLLATYPKKFDLWNQLIDLETSAADADKGVIRDLFDRGSKVKGLKPRQAKAWFRRWAQ 1728

Query: 1784 YEKSVGEEERIEYVKQKAMEYVES 1807
            +E+  G+++  E V  KA E+  +
Sbjct: 1729 WEEKNGDKKSRERVSAKAQEWART 1752



 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 198/742 (26%), Positives = 338/742 (45%), Gaps = 66/742 (8%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLA-------------RAADALDPILDNEIEANED 55
           G  + G V  +N  D+ + LP  + G                A+   D   ++E E + D
Sbjct: 158 GSLVLGSVCAINSLDIAVALPNNIIGHVPITAISAPLTKRLEASAGNDNAEESEDENDND 217

Query: 56  NLLPTIFHVGQLVSCIVLQLDDDKKE----IGKRKIWLSLRLSLLYKGLSLETVQEGMVL 111
             L ++F +GQ V   V+   D+         KR I LSL+ SL   G++ + V     +
Sbjct: 218 VDLESLFQIGQYVRAYVVSTVDEASTHTPGKAKRHIELSLQPSLANTGMAEQDVVVNSTV 277

Query: 112 TAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKV 168
            A + S+EDHGY++   +      GFL R  + ++   + ++PG +L  +V + +   KV
Sbjct: 278 MAAIASVEDHGYVMDIEIADSKLQGFLARKQVDKSIPQEALQPGAVLLCIV-TKNAKGKV 336

Query: 169 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 228
           V LS+  +T+           +ID  +PG      V  +  +G++   +     T D+ H
Sbjct: 337 VQLSTLGETMGNVENVPSTATTIDTFLPGTAADVLVSEVSSHGIVGKIMGSLDVTADLVH 396

Query: 229 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQ 288
                   + ++ Y    ++ AR++   PT++      +P L  +  P S      I ++
Sbjct: 397 SGAGPDGIDLEDTYKVGSRLKARVICNFPTAK------HPKLGISALPHST-----IVEK 445

Query: 289 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGF 345
             V +V+  +GL +D+    VS   +V IS V + +V  L      YK GS    R++G+
Sbjct: 446 CTVKQVEPEIGLYVDVGVEGVS--GFVHISRVKDGKVDALFENSGPYKVGSVHAGRVVGY 503

Query: 346 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKAL 400
              +G+    L+ S  E       D+  G VV G V  + V++ G    IV+   G+  L
Sbjct: 504 NAFDGMYLISLEKSVLEQPFLRIEDIPVGAVVSGVVEKMVVNAAGVGGLIVKIADGISGL 563

Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAEA 458
            P  H ++  +  P KKF+ G ++  RVL     S++I +T KKTLV S L  + SY + 
Sbjct: 564 VPEMHFADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLTLKKTLVNSDLPAIQSYEQI 623

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
                  G I  + +HG  V+FY  ++GF P SE+      +P   + VGQ V   ++S 
Sbjct: 624 AVGQQALGTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEHFRVGQTVSIYVISF 683

Query: 519 IPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 574
            P + ++ +S         E  L    +++G +VS  V   T + V V  +A    K  +
Sbjct: 684 DPDAAKLIVSCKDPSAFGLEKQLALKKLQIGDVVSAKVTQKTDDDVFVE-LADSSLKAIL 742

Query: 575 PTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLLSAKYSLINSAQQ--- 626
           P  HL D  +  +  +S +K         +L++L+ NE+  +++LS K SL+ ++++   
Sbjct: 743 PVAHLTD--KSVSKTQSALKKIHVNQTLAELVILEKNEARRSIILSQKPSLVKASKEGKF 800

Query: 627 -LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS--KAVDGQRADLSKTYYV 683
               D + +     V GY+ NI  T  FV+F G+LT   P+S     D  + D     + 
Sbjct: 801 LTTLDGARV--GDEVSGYIRNITATAVFVQFGGKLTALLPKSMIPREDQDKPDFG--MFK 856

Query: 684 GQSVRSNILDVNSETGRITLSL 705
            QSV   I  VN+E  R+ +++
Sbjct: 857 SQSVTVKITSVNTELNRLVVAI 878



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 4/163 (2%)

Query: 374  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
            G +V+G V  V   G  V   G V A   + ++S+  +    ++F+V   +  R++ V +
Sbjct: 1201 GEIVRGFVKNVSDKGLFVTLGGTVTAFVQIKNLSDAYLKYWKEQFQVDQLVKGRIISVAN 1260

Query: 434  KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGVQGFAPRS 491
             RI ++ K ++V      L++ ++  +     G + K+E+ G F+       + G   RS
Sbjct: 1261 GRIEMSLKPSVVDKDYVPLTTISDLKEGQTITGRVRKVEEFGAFIDIDGSANLSGLCHRS 1320

Query: 492  ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
            E+      +   +Y  G  VK +++     ++RINL   +KP+
Sbjct: 1321 EMSDKTVKDARKLYEEGDKVKAKVLKVDITAKRINLG--LKPS 1361


>gi|367027696|ref|XP_003663132.1| hypothetical protein MYCTH_2304622 [Myceliophthora thermophila ATCC
            42464]
 gi|347010401|gb|AEO57887.1| hypothetical protein MYCTH_2304622 [Myceliophthora thermophila ATCC
            42464]
          Length = 1818

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 405/1529 (26%), Positives = 709/1529 (46%), Gaps = 201/1529 (13%)

Query: 363  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG----VKALCPLPHMSEFEIVKPGKKF 418
            G V  H DV   +V  G     D    + Q+  G     + +C  P+          K  
Sbjct: 381  GKVMGHLDVTADLVHSG--AGPDGVDIVNQYKVGSRLKARIICTFPN---------AKLP 429

Query: 419  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 478
            K+G  L+  V+ +K K      ++ L  + LA  +   E T R +  G        G +V
Sbjct: 430  KLGISLLPHVVSLKPKIANKDGQELLPTAILAHSAIVNECTVRKVEPGI-------GLYV 482

Query: 479  RF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF----M 530
                 GV GF   S +    +D   E S  Y VG V   R++          LSF    +
Sbjct: 483  DVGVEGVPGFVHISRVKDGKVDTLFENSGPYKVGSVHPGRVVGYNNFDGMFLLSFEKKVL 542

Query: 531  MKPTRVSEDDLVKLGSLVSGVVDVVTPN----AVVVYVIAKGYSKGTIPTEHLAD-HLEH 585
             +P    ED  + +G++V GVV+ +  N      ++  IA+G S G +P  HLAD HL+H
Sbjct: 543  EQPFLRIED--IPIGAVVPGVVEKLVINQDGLGGLIVNIAQGIS-GLVPEMHLADVHLQH 599

Query: 586  ATVMKSVIKPGYEFDQLLVLDNES-SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 644
                +   + G +    ++  N +   L L+ K +L+NS          +       G +
Sbjct: 600  P---EKKFREGMKVKARVLSTNPAMHQLRLTLKKTLVNSEAPAIKSYDELAVGLQAPGTI 656

Query: 645  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
             N+++ G  V+F G+L GF P S+  +   +D  + + VGQ+V   +L  + ET R+ +S
Sbjct: 657  VNVLQHGAIVQFYGQLRGFLPVSEMSEAYISDPKEHFRVGQTVSIYVLSFDPETRRLIVS 716

Query: 705  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 764
             K               F LE+++A+ +                IG ++  KV +  +  
Sbjct: 717  CKDPSA-----------FGLEKQLALKK--------------LQIGDLVSAKVTQKTEDD 751

Query: 765  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLK 814
            V V   + S        H    +  ++ S ++            +L+  +A R + LS K
Sbjct: 752  VFVELTDSSLKAILPVGHLTDKSVSKTQSALKKIHVNQTLSDLVVLEKNEARRSIILSHK 811

Query: 815  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 874
               +          QA K+ +   +  D  +  TV   V  +      +       ++  
Sbjct: 812  PSLV----------QASKEGKLLRSVDDARLGDTVAGFVRNITATAAFVQFAGNLTALLP 861

Query: 875  ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET-SSSKRAKKK 933
             +    + Q          QS+   + ++      GRLL+ + ++S+ E   SSK A + 
Sbjct: 862  KTKLPKDAQDKLNFGLFKSQSLAVKITSI--DRDLGRLLVAIPSVSDEEARKSSKPADRA 919

Query: 934  --------SSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 982
                    SS D   +G + +A +  +K  +L ++      GRI ++++ D   ++ ++ 
Sbjct: 920  VNALDDSVSSMDDLKIGKITKARVKSVKETQLNVQIADNVQGRIDVSQIFDKWEDIPDSR 979

Query: 983  --FSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFE 1032
                 FK    + AR++    A++++  P   +S   + ELS KPS L    +   L  +
Sbjct: 980  RPLKRFKQNDILEARVLGIHDARNHRFLPITHRSSHSVLELSAKPSDLKPDTLPEPLSLD 1039

Query: 1033 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1092
            +  +  G     +V  V + +  + +S +++ ++  ++++ + S+L   ++ F +G A+ 
Sbjct: 1040 K--IEPGSSYIAFVNNVASSYLWVNLSPNVRGRISAMEASDDLSKLANLEKSFPVGSALQ 1097

Query: 1093 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1152
              VLS++KEK+ + L  R        +   +S D +Q    +G ++  +++KI      +
Sbjct: 1098 VRVLSVDKEKQRVDLSAR-----APGEAAQLSWDKIQ----QGLVLPAKVTKINDR--QV 1146

Query: 1153 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1212
            VV++   + G VH  +L +         YDE   +PLS + + + V+  V+E+ ++ +  
Sbjct: 1147 VVKLSELVAGPVHLADLAD--------DYDEA--NPLS-HSKNEIVRVAVVEVDKSNK-- 1193

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
              + LS+R S           L++ +    K + K   L    I++G+VKNV+ KG F+ 
Sbjct: 1194 -RLRLSMRPS---------RVLNSSLPVKDKEITKSTKLEVGDIIRGFVKNVSDKGLFVS 1243

Query: 1273 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1332
            L   + A V + NLSD Y++  ++ F + +LV GR++SV     R+E+ LK S       
Sbjct: 1244 LGGDVVAHVKIKNLSDAYLKDWKEHFQVDQLVKGRIISVA--DGRIEMDLKPSVVEQDYV 1301

Query: 1333 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRA 1391
              I  +++L  G IV G++++VE +G F+ I+ + NL GLCH SE+++ +V +  T+Y  
Sbjct: 1302 PPIT-IADLREGQIVTGKVRKVEEFGAFVDIDGSMNLSGLCHRSEMADRNVKDARTLYNE 1360

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLEN 1451
            G++VK ++LKVD EK+R++LG+K SYFK+D  +      EE D      G        E+
Sbjct: 1361 GDRVKARVLKVDLEKKRVNLGLKPSYFKDDEVDDMDVDSEEEDAGAALNGE-------ED 1413

Query: 1452 SSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTD-EAKT 1510
            S       D E  D G  +L            E + D+ + D++ G +  +G T  EA  
Sbjct: 1414 SG------DEEMSDAGGAILVGGSDDDDDEEDEEDDDEGKSDVEMGEAPEEGLTGLEAGG 1467

Query: 1511 IDEKNNRHAK-------------KKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSS 1557
             D   +                 KK K+ RE +    +   L+ + P+T  ++ERL+   
Sbjct: 1468 FDWTADALDADEDAKAGPADEPIKKTKKRREPQGIVDKTAELDINGPQTSSDYERLLLGQ 1527

Query: 1558 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1617
            P+SS +WI YMA  + + D+  AR +AERAL+TINI+EE EKLN+W+AY NLE  YG   
Sbjct: 1528 PDSSELWIAYMASQMQINDLASARQVAERALKTINIKEETEKLNVWIAYLNLEVAYGT-- 1585

Query: 1618 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL-YKMIKKF-KHSCKVWLRR 1675
            EE V +VF+RA  Y D +++H  L  +Y ++ ++K A+ L   +++KK+   S  VW+  
Sbjct: 1586 EETVEEVFKRACTYNDDQEIHERLASIYIQSGKHKEAERLFEERILKKYGSRSPHVWINY 1645

Query: 1676 VQRLLKQ--QQEGVQAVVQRALLSL---------PRHKHIKFISQTAILEFKNGVADR-- 1722
               L  +  Q E  +A+ +RA   L         P   ++  + + A LEF++   DR  
Sbjct: 1646 AHFLHTKANQPERARALCKRATQILCNPANVHTNPSQVYLTLLPKFAALEFRSPSGDREQ 1705

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIR-----LGDVDLIRGLFERAISL-SLPPKKMKF 1776
            GR++FE +L+ YP++ DLW+   D E       + DV ++R LFER   +  L P++ K 
Sbjct: 1706 GRTLFEQLLATYPRKFDLWNQLADLETSSFRDGVDDVGVVRDLFERGSKVKGLKPRQAKA 1765

Query: 1777 LFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
             F+++ ++E+  G+ +  E V  KA E+ 
Sbjct: 1766 WFRRWAKWEEEKGDAKSRERVSAKAQEWA 1794



 Score =  219 bits (559), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 295/1226 (24%), Positives = 518/1226 (42%), Gaps = 176/1226 (14%)

Query: 54   EDNLLPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 112
            +D  L  +F++GQ V   V   LD+      KR I LSL  +    G+S + + E   L 
Sbjct: 217  DDVDLNGLFYIGQYVRAYVTSTLDESTPGKSKRHIGLSLEPAHANTGMSEQDLVENSTLM 276

Query: 113  AYVKSIEDHGYILHFGLPS--FTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVV 169
            A V SIEDHG++++ G+      GFLPR  L ++    +++PG +L  +V     + KVV
Sbjct: 277  ASVASIEDHGFVMNIGIADSDVKGFLPRKQLDKSIPPENLQPGSVLLCIVTGRAASGKVV 336

Query: 170  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 229
             LS+  D +        +  +I   +PG      V  + ++GV+   + +   T D+ H 
Sbjct: 337  QLSTLSDRLGNPKHNPAEATTIGSFLPGAAADVLVSEVSQHGVIGKVMGHLDVTADLVHS 396

Query: 230  QNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRA-----------P 276
                   +  N Y    ++ ARI+   P ++   +G++L P+++  +            P
Sbjct: 397  GAGPDGVDIVNQYKVGSRLKARIICTFPNAKLPKLGISLLPHVVSLKPKIANKDGQELLP 456

Query: 277  PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYK 333
             + +    I ++  V +V+ G+GL +D+    V  P +V IS V + +V  L      YK
Sbjct: 457  TAILAHSAIVNECTVRKVEPGIGLYVDVGVEGV--PGFVHISRVKDGKVDTLFENSGPYK 514

Query: 334  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSFGA 389
             GS    R++G+ + +G+     +    E       D+  G VV G V    I  D  G 
Sbjct: 515  VGSVHPGRVVGYNNFDGMFLLSFEKKVLEQPFLRIEDIPIGAVVPGVVEKLVINQDGLGG 574

Query: 390  -IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVK 446
             IV    G+  L P  H+++  +  P KKF+ G ++  RVL       ++ +T KKTLV 
Sbjct: 575  LIVNIAQGISGLVPEMHLADVHLQHPEKKFREGMKVKARVLSTNPAMHQLRLTLKKTLVN 634

Query: 447  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 506
            S+   + SY E    L   G I  + +HG  V+FY  ++GF P SE+      +P   + 
Sbjct: 635  SEAPAIKSYDELAVGLQAPGTIVNVLQHGAIVQFYGQLRGFLPVSEMSEAYISDPKEHFR 694

Query: 507  VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVV 562
            VGQ V   ++S  P +RR+ +S         E  L    +++G LVS  V   T + V V
Sbjct: 695  VGQTVSIYVLSFDPETRRLIVSCKDPSAFGLEKQLALKKLQIGDLVSAKVTQKTEDDVFV 754

Query: 563  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLLSAK 617
             +      K  +P  HL D  +  +  +S +K          L+VL+ NE+  +++LS K
Sbjct: 755  ELTDSSL-KAILPVGHLTD--KSVSKTQSALKKIHVNQTLSDLVVLEKNEARRSIILSHK 811

Query: 618  YSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 675
             SL+ ++++  L            V G+V NI  T  FV+F G LT   P++K     + 
Sbjct: 812  PSLVQASKEGKLLRSVDDARLGDTVAGFVRNITATAAFVQFAGNLTALLPKTKLPKDAQD 871

Query: 676  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 735
             L+   +  QS+   I  ++ + GR+ +++     S +D    +     +  +  L  S 
Sbjct: 872  KLNFGLFKSQSLAVKITSIDRDLGRLLVAIP----SVSDEEARKSSKPADRAVNALDDSV 927

Query: 736  HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 795
             +  +LK      IG + + +V    +  + V   +  +V G I   Q+           
Sbjct: 928  SSMDDLK------IGKITKARVKSVKETQLNVQIAD--NVQGRIDVSQI----------- 968

Query: 796  QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKRE--ASKDLGVHQTVN-AI 852
                                   D++ +   +R+  K+ ++ +   ++ LG+H   N   
Sbjct: 969  ----------------------FDKWEDIPDSRRPLKRFKQNDILEARVLGIHDARNHRF 1006

Query: 853  VEIV-KENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN----GQSVIATVMALPSSS 907
            + I  + ++ VL L         A  SD      P+   L+    G S IA V  + SS 
Sbjct: 1007 LPITHRSSHSVLEL--------SAKPSDLKPDTLPEPLSLDKIEPGSSYIAFVNNVASSY 1058

Query: 908  TAGRLLLLLKA-ISETETSS--SKRAKKKSSYDVGSLVQAEI------------------ 946
                L   ++  IS  E S   SK A  + S+ VGS +Q  +                  
Sbjct: 1059 LWVNLSPNVRGRISAMEASDDLSKLANLEKSFPVGSALQVRVLSVDKEKQRVDLSARAPG 1118

Query: 947  --------------------TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF 986
                                T+I   ++ +K      G +H+ ++ DD      N  S+ 
Sbjct: 1119 EAAQLSWDKIQQGLVLPAKVTKINDRQVVVKLSELVAGPVHLADLADDYDEA--NPLSHS 1176

Query: 987  KIGQTVTARI-IAKSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVT 1043
            K      A + + KSNK          LS++PS +  S   +  K + +   + +G  + 
Sbjct: 1177 KNEIVRVAVVEVDKSNK-------RLRLSMRPSRVLNSSLPVKDKEITKSTKLEVGDIIR 1229

Query: 1044 GYVYKVDNEWALLTISRHLKAQLFI--LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1101
            G+V  V ++   +++   + A + I  L  AY    L++++  F + + V G ++S+   
Sbjct: 1230 GFVKNVSDKGLFVSLGGDVVAHVKIKNLSDAY----LKDWKEHFQVDQLVKGRIISVADG 1285

Query: 1102 KKLLRLVLRPF---QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
            +  + + L+P    QD +   T+          + EG IV G++ K+      + +    
Sbjct: 1286 R--IEMDLKPSVVEQDYVPPITI--------ADLREGQIVTGKVRKVEEFGAFVDIDGSM 1335

Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEG 1184
            +L G  H +E+ +  V D  + Y+EG
Sbjct: 1336 NLSGLCHRSEMADRNVKDARTLYNEG 1361



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 180/867 (20%), Positives = 325/867 (37%), Gaps = 179/867 (20%)

Query: 6    ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVG 65
            ++ G++  G +  V +   ++   G LRG    ++  +  + +  E          F VG
Sbjct: 646  LAVGLQAPGTIVNVLQHGAIVQFYGQLRGFLPVSEMSEAYISDPKEH---------FRVG 696

Query: 66   QLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLY---KGLSLETVQEGMVLTAYVKSIEDHG 122
            Q VS  VL  D +      R++ +S +    +   K L+L+ +Q G +++A V    +  
Sbjct: 697  QTVSIYVLSFDPET-----RRLIVSCKDPSAFGLEKQLALKKLQIGDLVSAKVTQKTEDD 751

Query: 123  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVYLSSD 174
              +     S    LP  +L + S    +  L        L   VV   +  R+ + LS  
Sbjct: 752  VFVELTDSSLKAILPVGHLTDKSVSKTQSALKKIHVNQTLSDLVVLEKNEARRSIILSHK 811

Query: 175  PDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
            P  V    +K+ K + S+D    G  V+  V++I      + F    T            
Sbjct: 812  PSLVQ--ASKEGKLLRSVDDARLGDTVAGFVRNITATAAFVQFAGNLTAL---------L 860

Query: 234  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR 293
            P T    D     K+N  +      S+++ +                         K+  
Sbjct: 861  PKTKLPKD--AQDKLNFGLF----KSQSLAV-------------------------KITS 889

Query: 294  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 353
            +DR LG LL            V I  V++EE RK  K                       
Sbjct: 890  IDRDLGRLL------------VAIPSVSDEEARKSSKPADRA------------------ 919

Query: 354  GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIV 412
                 +A +  V +  D+K G + K +V +V      VQ    V+    +  +  ++E +
Sbjct: 920  ----VNALDDSVSSMDDLKIGKITKARVKSVKETQLNVQIADNVQGRIDVSQIFDKWEDI 975

Query: 413  ----KPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLIT 464
                +P K+FK    L  RVLG+   R    + +TH+ +    +L+   S  +  D L  
Sbjct: 976  PDSRRPLKRFKQNDILEARVLGIHDARNHRFLPITHRSSHSVLELSAKPSDLKP-DTLPE 1034

Query: 465  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---------------YHVGQ 509
               + KIE    ++ F N V        L  +     S+M               + VG 
Sbjct: 1035 PLSLDKIEPGSSYIAFVNNVASSYLWVNLSPNVRGRISAMEASDDLSKLANLEKSFPVGS 1094

Query: 510  VVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLGSLVSGVVDVVTPNAVVVYVIAK 567
             ++ R++S     +R++LS    P   ++   D ++ G ++   V  +    VVV +   
Sbjct: 1095 ALQVRVLSVDKEKQRVDLS-ARAPGEAAQLSWDKIQQGLVLPAKVTKINDRQVVVKL--- 1150

Query: 568  GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS-LINSA 624
              S+      HLAD  +       +     E  ++ V++ + SN  L LS + S ++NS+
Sbjct: 1151 --SELVAGPVHLADLADDYDEANPLSHSKNEIVRVAVVEVDKSNKRLRLSMRPSRVLNSS 1208

Query: 625  QQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 678
              LP      + ++ +    ++ G+V N+ + G FV   G +          D    D  
Sbjct: 1209 --LPVKDKEITKSTKLEVGDIIRGFVKNVSDKGLFVSLGGDVVAHVKIKNLSDAYLKDWK 1266

Query: 679  KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 738
            + + V Q V+  I+ V    GRI + LK S         +++ ++    IA L+      
Sbjct: 1267 EHFQVDQLVKGRIISVAD--GRIEMDLKPSV--------VEQDYVPPITIADLRE----- 1311

Query: 739  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES------- 791
                       G ++ GKV +  +FG  V  +   ++ G     ++A   V+        
Sbjct: 1312 -----------GQIVTGKVRKVEEFGAFVDIDGSMNLSGLCHRSEMADRNVKDARTLYNE 1360

Query: 792  GSVIQAAILDVAKAERLVDLSLKTVFI 818
            G  ++A +L V   ++ V+L LK  + 
Sbjct: 1361 GDRVKARVLKVDLEKKRVNLGLKPSYF 1387



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 169/378 (44%), Gaps = 38/378 (10%)

Query: 91   LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL----PRNNLAENSG 146
            L+   L + LSL+ ++ G    A+V ++    Y+     P+  G +      ++L++ + 
Sbjct: 1027 LKPDTLPEPLSLDKIEPGSSYIAFVNNVA-SSYLWVNLSPNVRGRISAMEASDDLSKLAN 1085

Query: 147  ID--VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRV 204
            ++     G  LQ  V S+D+ ++ V LS+           +   +S D +  G+++  +V
Sbjct: 1086 LEKSFPVGSALQVRVLSVDKEKQRVDLSAR-------APGEAAQLSWDKIQQGLVLPAKV 1138

Query: 205  QSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 264
              I +  V++       G V +  L + +   N  + +++++ V   ++ VD +++ + L
Sbjct: 1139 TKINDRQVVVKLSELVAGPVHLADLADDYDEANPLS-HSKNEIVRVAVVEVDKSNKRLRL 1197

Query: 265  TLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYV 315
            ++ P  + N + P         + ++VGDI      V+     GL + +    V   A+V
Sbjct: 1198 SMRPSRVLNSSLPVKDKEITKSTKLEVGDII--RGFVKNVSDKGLFVSLGGDVV---AHV 1252

Query: 316  TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVK 372
             I ++++  ++  ++ ++    V+ RI+     +G     LK S  E       T +D++
Sbjct: 1253 KIKNLSDAYLKDWKEHFQVDQLVKGRIISV--ADGRIEMDLKPSVVEQDYVPPITIADLR 1310

Query: 373  PGMVVKGKVIAVDSFGAIVQFPGGVK--ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
             G +V GKV  V+ FGA V   G +    LC    M++  +      +  G  +  RVL 
Sbjct: 1311 EGQIVTGKVRKVEEFGAFVDIDGSMNLSGLCHRSEMADRNVKDARTLYNEGDRVKARVLK 1370

Query: 431  V--KSKRITVTHKKTLVK 446
            V  + KR+ +  K +  K
Sbjct: 1371 VDLEKKRVNLGLKPSYFK 1388


>gi|390357065|ref|XP_789726.3| PREDICTED: protein RRP5 homolog [Strongylocentrotus purpuratus]
          Length = 1841

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 377/1419 (26%), Positives = 643/1419 (45%), Gaps = 174/1419 (12%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD-----NEIEANEDNLL 58
            + +S GM +  VV E++E ++V+ LP G     +  D            NE    ED  L
Sbjct: 90   KTLSEGMLVLAVVQEIHEYEIVLSLPNGQTAFVQITDVSSFFTQQLQELNESNGAEDQDL 149

Query: 59   PTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 115
            P I   + VG LV C V  L   K   G R+I  SL    +   L +  ++ GM L   V
Sbjct: 150  PNIQDVYQVGNLVPCKVKSLGASKD--GHRRIQASLDYKEVNSELGISFIKAGMTLHGCV 207

Query: 116  KSIEDHGYILHFGLPSFTGFLPRNNLAENS----GIDVKPGLLLQGVVRSIDRTRKVVYL 171
             S+EDHGY +  G+     FL +    + +    G  +K G L+  +V+++    + + L
Sbjct: 208  SSVEDHGYTIDLGIRGTNAFLAKEEATKGAKGRKGETMKTGKLVTCLVKAVKANGRSIIL 267

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            + DP+ +  C        +   L+PG  +   V  +L N +++     + G VD  HL++
Sbjct: 268  TFDPERLKSCKATKATHTTFSSLIPGTRLDAMVTKVLSNSLIMDIFGLYKGCVDPIHLKD 327

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS-----HVKVGDIY 286
            T    +    Y+  +K+ A +L+  PT++++GL+LNP        P+      +  GDI 
Sbjct: 328  T---VDELTKYDIGQKLVAVVLYNCPTTKSIGLSLNPAHHKTTFDPATDVIRDLSPGDII 384

Query: 287  DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC---VRVRIL 343
            + + VVRV     L++ +   P  T   V  S  ++++    +K+Y   S    VR RIL
Sbjct: 385  EAALVVRVQEKENLIVQL--NP-KTRGIVYHSHGSDDK----QKRYSPASVGEKVRCRIL 437

Query: 344  GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 403
             F   + LA   ++ S  +      +DVKPGM+VKG + +V S G  V+    +    P 
Sbjct: 438  SFNLFDRLAIVSMRKSILDKPFLGINDVKPGMLVKGVIESVMSRGVAVKIQDRIHGFVPR 497

Query: 404  PHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDR 461
             H+++  + KP ++F +G+E+  RVL V+   +R+ +THKKT+VKS L  L+SYA+    
Sbjct: 498  THLADIPVQKPQERFTIGSEIELRVLLVEPAKRRVLLTHKKTMVKSSLPFLASYAQPKLG 557

Query: 462  LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS-IP 520
            +  HG +  ++  GC V FYN V+G  PR+ELG+D    P+  ++VGQV+KCR++ +  P
Sbjct: 558  MWIHGCVVAVKDFGCIVSFYNDVKGIIPRAELGMDESSSPTDNFYVGQVLKCRVLRTHSP 617

Query: 521  ASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 580
             S+++ LS + K  R  E +  + G +V   +  V  + + V  +  G     IP  HL+
Sbjct: 618  ESKKLALS-LRKDGR-KERESFEAGKIVKVKISKVKQDGLEVIQLP-GNKPAFIPKTHLS 674

Query: 581  DHLEHATVMKSVIKPGYEFDQLLV--LDNESSNLLLSAKYSLINSAQ---QLPSDASHIH 635
            DH +    + +    G   DQ L      +S   +++ K  L+N+A+   ++  D S + 
Sbjct: 675  DHPDICDALLASYSEGDVIDQALTWSYSGKSRTCIVTCKPLLLNAARNKTEIVRDFSELE 734

Query: 636  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
             N  + G + + +  G FV F   + G AP++   D   +D SK Y VGQ++R+ + +VN
Sbjct: 735  TNMFLIGVLRHTMSYGVFVEFPNHIVGLAPKAMMSDEFVSDTSKLYEVGQTLRAKVTEVN 794

Query: 696  SETGRITLSLKQSCCSSTDASF-----------------MQEHFLLEEKI-----AMLQS 733
             E  R  +SLK S C   DA                   +Q   ++  K+     A +++
Sbjct: 795  VEKKRFLVSLKTSDCFQDDAXXXXXXXXXXXXXXXXXQPLQFKHVISHKVGSLVHATVRN 854

Query: 734  SKHNG------------------SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
            +   G                   E K V    +GS++   V  +   G++ S     D 
Sbjct: 855  TPGKGIICSLPHAVDAVIPQDHVHEFKHVISHKVGSLVHATVRSTPGKGIICSLPHAVD- 913

Query: 776  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 835
               I    + G + + G  I+A ++++  + + V LSLK   I+  +++ S  +  KK  
Sbjct: 914  -AVIPQDHVHGKSPKVGDSIEACVMNIDLSSKAVTLSLKPDTIEGCKKSKSKGKKGKKAV 972

Query: 836  KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQS 895
               A +D G        V +VK  +++            A            KQ LN  S
Sbjct: 973  ASLA-EDKGK-------VLMVKSEFIL------------AQTGQGKLVYLSAKQHLNNFS 1012

Query: 896  VIA-------TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD-----VGSLVQ 943
            V         TV    SS   GR L  L    +      K  K  + +D     VG +V 
Sbjct: 1013 VQKDAIKIGDTVTIGDSSFVDGRFLAALVKEDKPSKKKEKERKSAAVHDTSQKLVGQIVD 1072

Query: 944  AEITEIKPLELRLKF--GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII-AKS 1000
            A +  +K  ++ ++   G G+ GRIH TEV+D        L   F IGQ V A++I  + 
Sbjct: 1073 AVVKSVKESQVNIEIEGGQGY-GRIHATEVSDTMKPGSYPL-EFFTIGQKVKAKVIGCRR 1130

Query: 1001 NKPDMKKSF--------LWELSIKPSMLTVSEIGSKLLFEECDVS---IGQRVTGYVYKV 1049
             K     +         L ELS + S++    + S+    E +++   IGQ VT  + + 
Sbjct: 1131 GKRGQHLAVSHGHGALSLLELSTRKSVMEADSVPSEDQSSENEMNAFQIGQTVTCIINRF 1190

Query: 1050 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1109
              E   + +SR L+ ++  L+ +   S L+  +  F  G+     V+  + E  +L L +
Sbjct: 1191 HKEILWVHLSRSLEGKIHRLNLSKHASTLENPESYFKPGQVHRAKVVRQDNEHNMLELSM 1250

Query: 1110 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1169
                           +  + T    G +V  +++KIL       VQ+   L G +  T++
Sbjct: 1251 ---------------SGCIATTFEVGSVVNCKVTKILENKAQ--VQLPYGLQGSMFATDI 1293

Query: 1170 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR-SSLDGMSS 1228
             +I        Y E   +PL  ++  ++ +C + E S    G     +S+R S +   + 
Sbjct: 1294 DDI--------YQE---NPLERFEHHKYHRCCISEAS---TGKHGASVSMRPSQVKKATP 1339

Query: 1229 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1288
             +  DL          +  ++DL    +V+GYV++ + KG F+ LS  L  ++LL  LS 
Sbjct: 1340 PSGYDL---------EIRTLDDLKKGQVVRGYVRHCSEKGVFVSLSSNLHGRILLKKLSA 1390

Query: 1289 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
             YV+ P   F +GKL++ +VLS++  S ++E++  + D+
Sbjct: 1391 FYVKDPSAVFTVGKLLSTKVLSIDKKSGKIELSSSSKDT 1429



 Score =  295 bits (756), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 226/704 (32%), Positives = 360/704 (51%), Gaps = 66/704 (9%)

Query: 1159 HLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV---------LEIS 1206
            H +G +   EL   K++  +D +   D+   + ++ +  GQ V C +         + +S
Sbjct: 1141 HGHGALSLLELSTRKSVMEADSVPSEDQSSENEMNAFQIGQTVTCIINRFHKEILWVHLS 1200

Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK-HLEKI--EDLSPNM-------- 1255
            R++ G  H     R +L   +ST  +  S     PG+ H  K+  +D   NM        
Sbjct: 1201 RSLEGKIH-----RLNLSKHASTLENPES--YFKPGQVHRAKVVRQDNEHNMLELSMSGC 1253

Query: 1256 ---------IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
                     +V   V  +      + L   L   +  +++ D Y E+P + F   K    
Sbjct: 1254 IATTFEVGSVVNCKVTKILENKAQVQLPYGLQGSMFATDIDDIYQENPLERFEHHKYHRC 1313

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFI 1361
             +           V+++ S  + A+       EI  L +L  G +V G ++     G+F+
Sbjct: 1314 CISEASTGKHGASVSMRPSQVKKATPPSGYDLEIRTLDDLKKGQVVRGYVRHCSEKGVFV 1373

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            ++ ++NL G   + +LS  +V +   ++  G+ +  K+L +DK+  +I L   SS     
Sbjct: 1374 SL-SSNLHGRILLKKLSAFYVKDPSAVFTVGKLLSTKVLSIDKKSGKIELS-SSSKDTGL 1431

Query: 1422 ADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVP 1481
             D +     +   +   +     + S  + +   + + D  S+    ++    +S +  P
Sbjct: 1432 EDPVPEDQRQAGVKRKRDGTKKGKKSTEDGNDSGLGEADPLSDTEAEIITVAKKSSSDTP 1491

Query: 1482 PLEVNLDDEQPDMDN--GISQNQGHTDEAKTI-----------DEKNNRHAKK--KEKEE 1526
             L+++      D       S+  G  DE+              +E   + +KK  KE+E+
Sbjct: 1492 RLQISSGFSWGDTTTKPATSRKAGTADESDDDDDEEDEEEEEDNEPPVKTSKKDLKEEEK 1551

Query: 1527 REQEIRAAEERLL--EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIA 1584
             +++I    ER L   +  P TP++F+RLV SSPNSS  WI+YMAF L   D+EKAR+IA
Sbjct: 1552 AQEDILYKTERALMDAERTPETPEDFDRLVASSPNSSLAWIRYMAFYLHSVDIEKARAIA 1611

Query: 1585 ERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1644
            ERAL+TIN REE EKLN+WVAY NLEN YG   EE VV VF+RALQ C+P KV   L+ +
Sbjct: 1612 ERALKTINFREEQEKLNVWVAYLNLENLYGT--EEEVVAVFKRALQQCEPIKVFQQLVSI 1669

Query: 1645 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH 1703
            Y RT + + A++L   M+K+FK    VW+     L+K  + +  + ++QR+  SL +  H
Sbjct: 1670 YTRTSKIEQAEQLYETMVKRFKFDPDVWIGFGTFLMKHGKHDPARRLMQRSFKSLIQKDH 1729

Query: 1704 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1763
            +  I + A LE+++  ++RG++MFE ILS YPKRTD+WSIYLD  I+ GD    R LFER
Sbjct: 1730 VSVIVKFAQLEYRHAESERGKTMFENILSNYPKRTDIWSIYLDLTIKQGDTGTSRHLFER 1789

Query: 1764 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             I+L L  KK+KF FK++L++EK  G+E  I  VKQKA++YVES
Sbjct: 1790 VINLKLSAKKVKFFFKRFLDFEKKYGDESTINSVKQKAVDYVES 1833



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 154/338 (45%), Gaps = 51/338 (15%)

Query: 1084 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS-DKTVDISNDNMQTFIHEGDIVGGRI 1142
            ++ IG+ +   VL      K + L L P     + D   D+  D     +  GDI+   +
Sbjct: 334  KYDIGQKLVAVVLYNCPTTKSIGLSLNPAHHKTTFDPATDVIRD-----LSPGDIIEAAL 388

Query: 1143 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--FDPLSGYDEGQFVKC 1200
               +     L+VQ+ P   G V+ +            G D+ Q  + P S    G+ V+C
Sbjct: 389  VVRVQEKENLIVQLNPKTRGIVYHSH-----------GSDDKQKRYSPAS---VGEKVRC 434

Query: 1201 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1260
            ++L  +   R      +S+R S+              +D P      I D+ P M+V+G 
Sbjct: 435  RILSFNLFDRLAI---VSMRKSI--------------LDKP---FLGINDVKPGMLVKGV 474

Query: 1261 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1320
            +++V S+G  + +  ++   V  ++L+D  V+ P++ F IG  +  RVL VEP  +RV +
Sbjct: 475  IESVMSRGVAVKIQDRIHGFVPRTHLADIPVQKPQERFTIGSEIELRVLLVEPAKRRVLL 534

Query: 1321 TLKTSDSRTASQSEINNLSNL---HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1377
            T K    +T  +S +  L++     +G  + G +  V+ +G  ++  N ++ G+   +EL
Sbjct: 535  THK----KTMVKSSLPFLASYAQPKLGMWIHGCVVAVKDFGCIVSFYN-DVKGIIPRAEL 589

Query: 1378 SEDHVDNIETIYRAGEKVKVKILKV-DKEKRRISLGMK 1414
              D   +    +  G+ +K ++L+    E ++++L ++
Sbjct: 590  GMDESSSPTDNFYVGQVLKCRVLRTHSPESKKLALSLR 627



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 1335 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1394
            + + S L     +IG ++   SYG+F+   N ++VGL   + +S++ V +   +Y  G+ 
Sbjct: 727  VRDFSELETNMFLIGVLRHTMSYGVFVEFPN-HIVGLAPKAMMSDEFVSDTSKLYEVGQT 785

Query: 1395 VKVKILKVDKEKRRISLGMKSS-YFKNDA 1422
            ++ K+ +V+ EK+R  + +K+S  F++DA
Sbjct: 786  LRAKVTEVNVEKKRFLVSLKTSDCFQDDA 814


>gi|327305835|ref|XP_003237609.1| rRNA biogenesis protein RRP5 [Trichophyton rubrum CBS 118892]
 gi|326460607|gb|EGD86060.1| rRNA biogenesis protein RRP5 [Trichophyton rubrum CBS 118892]
          Length = 1823

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 362/1348 (26%), Positives = 643/1348 (47%), Gaps = 176/1348 (13%)

Query: 542  VKLGSLVSGVVD--VVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIKPGY 597
            V +GS+V G ++  ++ P  +   +++   S  G +P  H+AD  L+H    +   + G 
Sbjct: 565  VTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMADTKLQHP---EKKFREGL 621

Query: 598  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
            +   ++L +D +   L L+ K SL+NS      D   I   +   G +  I   G  V+F
Sbjct: 622  KVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGNRSPGTLIKIQNNGAIVQF 681

Query: 657  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
             G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     + D  
Sbjct: 682  YGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLIVSCKDPSTVTAD-- 739

Query: 717  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 776
              Q  F   EK+                     G V+ G V E +   +++  ++   + 
Sbjct: 740  -YQSAF---EKVHP-------------------GLVVSGTVFEKSSDDLLIKLQDSGLIA 776

Query: 777  GFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRFREANS 826
               + H   G++ +  S +             +  V K+ RL++++ K            
Sbjct: 777  RITSDHISDGSSAKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATL--------- 827

Query: 827  NRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKF 885
             ++A  + R     +D+     V  IV+ I+ E   V  L      I    V D +  + 
Sbjct: 828  -KEAAAEGRLPANFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHASR- 885

Query: 886  PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS------ETETSSSKRA--------- 930
            P   +   Q + ATV A+   S   R LL L+ +S      ++ ++S K+A         
Sbjct: 886  PDFGYSRFQVISATVCAVQEDSD--RFLLSLRPVSKPKQQSDSNSASEKKAPAVVLNNPV 943

Query: 931  ----KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FS 984
                K      VG + +A+IT +K  +L +       GRI I+E+ D   ++ +      
Sbjct: 944  DEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLK 1003

Query: 985  NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1035
            +F   + +  R++   +  + K         K  ++ELS K S L   E    L  E+  
Sbjct: 1004 SFHSKEILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQAGEF-KPLHLEQ-- 1060

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            +  G +  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A+   V
Sbjct: 1061 LKAGDQYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAV 1120

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1155
              I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI      ++VQ
Sbjct: 1121 TGIDAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR--QVLVQ 1169

Query: 1156 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1215
            I  ++ G +   ++ +          D  + +P + + + + ++  V+++    +    +
Sbjct: 1170 INDNVVGAISLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIPNK---KI 1215

Query: 1216 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1275
              S+R S           LS+ +      +  I++L    IV+G+++ V + G F+ L  
Sbjct: 1216 SFSVRPS---------KVLSSSLPVVDPEITSIDNLKIGQIVRGFIRRVDNIGVFVTLGH 1266

Query: 1276 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1335
             + A + +S+LSD +++  + EF + +LV GR+  V+  + ++++TLK S +   +    
Sbjct: 1267 DVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKIQMTLKKS-ALDPNYKPP 1325

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEK 1394
              L +L VG IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y   + 
Sbjct: 1326 FTLKDLKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDI 1385

Query: 1395 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV 1454
            VK K+LKVD EK +I+LG+K+SYF++  D      E E++ + +E G     + +++   
Sbjct: 1386 VKAKVLKVDLEKGQIALGLKASYFRDLPDE----DESEANASDDEAGGIKLDAGVDSD-- 1439

Query: 1455 AVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN-----------QG 1503
               D+ M     G + L   +        + + D E  +  + I +             G
Sbjct: 1440 --DDVSM-----GGVDLEGEDDEEEEEEEDSDEDTEMENASDSIKKGGLVTSGFDWTGDG 1492

Query: 1504 HTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFV 1563
              D+ +  DE        K K+ R+ EI+      L+ + P++  ++ERL+   P+SS +
Sbjct: 1493 DKDKYEAADESAEDDGATKRKKRRKAEIQIDRTGDLDANGPQSVADYERLLLGEPDSSLL 1552

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W+KYMAF L + +V+KAR IA+RAL+T++I ++ EKLNIW+A  NLEN +GN  ++ + +
Sbjct: 1553 WLKYMAFQLELGEVDKAREIADRALRTMSIGQDTEKLNIWIARLNLENTFGN--DDTLDE 1610

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1683
            VF+ A +Y D  +++  +  ++ ++ + + ADEL    +KK   S   +       L   
Sbjct: 1611 VFKSACEYNDAHEIYDRMTSIFIQSGKTEKADELFQTALKKKVSSTPDFFLNYANFLFDT 1670

Query: 1684 QEGVQA---VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRT 1738
             E  Q    ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR 
Sbjct: 1671 MEAPQRGRDLLPRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERGRTVFEGLLSSFPKRI 1730

Query: 1739 DLWSIYLDQEIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLFKKYL 1782
            DLW++ LD EI++GD + +R LFER + +                 L  K+ KFLFKK+L
Sbjct: 1731 DLWNVLLDLEIKVGDEEQVRRLFERVLGIGHGVVAADGTKGGPKKKLKEKQAKFLFKKWL 1790

Query: 1783 EYEKSV---GEEERIEYVKQKAMEYVES 1807
             +E+ +   G+ + ++ VK +A +YV S
Sbjct: 1791 AFEEKIAPEGDTKMVDEVKARAADYVRS 1818



 Score =  210 bits (535), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 304/1288 (23%), Positives = 544/1288 (42%), Gaps = 146/1288 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA----------- 52
            + I+ G ++ G V+ +   D+ + LP  L G     +A+   L  ++EA           
Sbjct: 166  KRIAVGSRILGQVSSIGLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEE 224

Query: 53   ---NEDNLLPTIFHVGQLVSCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ 106
               ++D  L +   VGQ +   V   ++ +DD+K   K+ I LS+       GL+   + 
Sbjct: 225  DEDDDDLDLKSYVKVGQYLRAAVTATIRNEDDRKVKNKKHIELSIEPHAANSGLTKADMV 284

Query: 107  EGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRS 161
                + A V S+EDHG ++  GL      GF+    L   +G+D   VK G +   +V  
Sbjct: 285  VNATVQASVISVEDHGLVMDLGLEENEAKGFISSRELP--AGVDISTVKEGSVFLCIVTG 342

Query: 162  IDRTRKVVYLSSD---PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
             + +  V+ LS+D   P +V K    +    +I+  +PG      +  +   G++   + 
Sbjct: 343  QNASGTVIKLSADLASPGSVKKAHFLNT-APTINAFLPGTAAEILITEVTPRGMIGKIMG 401

Query: 219  YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN----------P 268
                 VD+ H   +    +    Y+   K+  R++   P+S  V L  +           
Sbjct: 402  MLDAVVDVIHSGASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPT 461

Query: 269  YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEV 325
              L N A      + DI  + KV  VD  LGL + + ST      +V +S +A+   + +
Sbjct: 462  ATLVNGAGDDLPSISDIIPEVKVTYVDSSLGLYVQLGST--KHQGFVHLSRIADGRVDSI 519

Query: 326  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV---- 381
              +E  YK GS    RI+GF  ++ L    L+    E   F   DV  G VVKGK+    
Sbjct: 520  SSIEGPYKVGSTHEGRIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLL 579

Query: 382  IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITV 438
            I  +   G IV     +  L P  HM++ ++  P KKF+ G ++  RVL V  + +++ +
Sbjct: 580  IKPEGINGLIVSLTDSISGLVPEMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRL 639

Query: 439  THKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 498
            T KK+L+ S  A    Y   +    + G + KI+ +G  V+FY  V+GF P SE+     
Sbjct: 640  TLKKSLLNSDSAPWKDYESISAGNRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYI 699

Query: 499  CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVD 553
             +PS  + VGQVV    ++    + R+ +S    P+ V+ D     + V  G +VSG V 
Sbjct: 700  KDPSQHFTVGQVVNVHALTVDAENERLIVS-CKDPSTVTADYQSAFEKVHPGLVVSGTVF 758

Query: 554  VVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNL 612
              + + +++ +   G     I ++H++D      T   + I+ G + D LLV   + S+ 
Sbjct: 759  EKSSDDLLIKLQDSGLI-ARITSDHISDGSSAKRTSTLNRIRVGQKMDGLLVYRVKKSHR 817

Query: 613  LL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
            L+  + K +L  +A +  LP++   I     V G V NII  G FV FL  LTG  P+  
Sbjct: 818  LIEVTNKATLKEAAAEGRLPANFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRL 877

Query: 669  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK-----QSCCSSTDASFMQEHFL 723
              D   +     Y   Q + + +  V  ++ R  LSL+     +    S  AS       
Sbjct: 878  VDDDHASRPDFGYSRFQVISATVCAVQEDSDRFLLSLRPVSKPKQQSDSNSAS------- 930

Query: 724  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHS 773
             E+K   +  +     ELK +E  ++G + + K+    D    VV        +   E  
Sbjct: 931  -EKKAPAVVLNNPVDEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIF 989

Query: 774  DVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQ 831
            D +  I   +    +  S  ++   +L +  A+  + + +S ++  +  +  +      Q
Sbjct: 990  DSWEDIKDRKRPLKSFHSKEILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQ 1049

Query: 832  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQ 889
              + K    + L         V  + E+ L L++ P     +    +S D + +   QK 
Sbjct: 1050 AGEFKPLHLEQLKAGDQYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKN 1109

Query: 890  FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEI 949
            F  G ++   V  + +     RL L  +  S  +T +     K      G ++   +T+I
Sbjct: 1110 FPIGSALQVAVTGIDAEKN--RLDLSARIGSSAKTLTVADLSK------GMILVGRVTKI 1161

Query: 950  KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSF 1009
               ++ ++      G I + ++ DD + V     +NF   + +   ++   + P+ K SF
Sbjct: 1162 TDRQVLVQINDNVVGAISLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKISF 1217

Query: 1010 LWELSIKPSMLTVSEIG--SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1067
                S++PS +  S +      +    ++ IGQ V G++ +VDN    +T+   + A  +
Sbjct: 1218 ----SVRPSKVLSSSLPVVDPEITSIDNLKIGQIVRGFIRRVDNIGVFVTLGHDVTA--Y 1271

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----------PFQDGIS 1117
            I  S    S L+E++  F + + V G +  ++K+   +++ L+          PF   + 
Sbjct: 1272 IRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKIQMTLKKSALDPNYKPPFT--LK 1329

Query: 1118 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP 1177
            D  V             G IV G++ K+      + +    +L G  H +E+    V D 
Sbjct: 1330 DLKV-------------GQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDA 1376

Query: 1178 LSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
                   Q      Y++   VK KVL++
Sbjct: 1377 T------QL-----YEKDDIVKAKVLKV 1393


>gi|401626228|gb|EJS44184.1| rrp5p [Saccharomyces arboricola H-6]
          Length = 1726

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 377/1305 (28%), Positives = 619/1305 (47%), Gaps = 181/1305 (13%)

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 623
            I  G  K  +P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 533  IFNGQFKANVPALHISD--TRLVYPERKFKIGSKVKGRILSVNLRGNVHMTLKKSLVNIE 590

Query: 624  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
            A + P       A  I   N      V      GC + F G L+GF P S+  +      
Sbjct: 591  ADESPLVSNYESAKEIKEKNEKTLATVQVFKPNGCVISFFGGLSGFLPNSEISEVFVKKP 650

Query: 678  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
             +   +GQ+V   +LDV+++  RI      + C  ++    Q+   +E  +         
Sbjct: 651  EEHLRLGQTVVVKLLDVDADRRRII-----ATCKVSNEQAAQQKDTIENIVP-------- 697

Query: 738  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES------ 791
            G  L      I  SVIE K  ES    V+V      ++ G I    L+ A +E       
Sbjct: 698  GRTL------ITVSVIE-KTKES----VIVEIP-GVNLRGVIYAGHLSDARIEQNRAQLK 745

Query: 792  ----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 847
                G+ +   ++D     R+ +++LK+  I   ++A            +   KD+ +H 
Sbjct: 746  KIRIGAELTGLVIDKDTRTRVFNMTLKSSLI---KDAKKKTLPLTYDDVKNIKKDVPMHA 802

Query: 848  TVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 902
             + +I +    V  N  ++ L LP Y  ++    + D N      K F   QSV  TV  
Sbjct: 803  YIKSISDKGLFVAFNGKFIGLVLPSY--AVDSRDI-DIN------KTFYINQSV--TVYL 851

Query: 903  LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD----------VGSLVQAEITEIKPL 952
            L +     + LL LKA    E      +  +S  D          +GS+V+A+I  +K  
Sbjct: 852  LRTDDQNQKFLLSLKAPKVKEEKKQVESNIESPIDSSIKTWDDISIGSVVKAKIKSVKKN 911

Query: 953  ELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK---- 1002
            +L +      HGR+ I EV D    + +     S++K    +  +II     KS+K    
Sbjct: 912  QLNVILAANLHGRVDIAEVFDTYEEIKDKKQPLSHYKKDDVIQVKIIGNHDVKSHKFLPI 971

Query: 1003 -PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1061
               + K+ + ELS+KP  L   E  +K L E   + +G+ +TG+V         LTIS  
Sbjct: 972  THRISKASILELSMKPLELKSKETHTKTLEE---IKVGEELTGFVNNSSGNHLWLTISPV 1028

Query: 1062 LKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1120
            LKA++ +LD     +   E  +  F +G A+   V S++ E          F + I    
Sbjct: 1029 LKARISLLDLTENDTRFSENVESVFPLGSALQVKVASVDHE--------HGFINAIGKTH 1080

Query: 1121 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE-LKNICVSDPLS 1179
            VD+   +M T I   D + GR+  +      +++ +G  + G    T+ L +  +S    
Sbjct: 1081 VDV---DMST-IKVADELPGRVLNVAEKY--VLLDLGNKVTGISFITDALDDFSIS---- 1130

Query: 1180 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1239
               E   D ++       +   VL ++   +    +ELSLRS+     S NS +      
Sbjct: 1131 -LKEAFQDKINN-----VIPTTVLAVNAENK---KIELSLRSATPKSRSINSHN------ 1175

Query: 1240 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1299
                      D+    IV G +KNV  KG F+ LS+K++A V ++ LSD Y++  +K + 
Sbjct: 1176 ----------DVKQGDIVDGIIKNVNDKGIFVYLSKKVEAFVPVTKLSDSYLKEWKKFYK 1225

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
              + V G+V++    S R+ +TL+ S+        + + S++  GDI  G +K V  +G+
Sbjct: 1226 PMQYVVGKVVTCSEDS-RISLTLRESEV-NGDLKVLKSYSDIKAGDIFDGTVKNVTDFGV 1283

Query: 1360 FITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
            F+ ++NT N  GL HV+E+++   +++  ++  G++VK  +LK + EK++ISL +K+S+F
Sbjct: 1284 FVKLDNTVNATGLAHVTEIADKKPEDLSVLFGVGDRVKAIVLKTNPEKKQISLSLKASHF 1343

Query: 1419 KNDADNLQMSSE---EESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIE 1475
               A+    + +   E+ DE + +V  +N S   +N+S A +D D++  D          
Sbjct: 1344 SKGAETTSTTDQAEKEDEDEIMADV-DFNDS---DNASDA-EDQDIKVTD---------- 1388

Query: 1476 SRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEK-----------NNRHAKKKEK 1524
             +A +P              +G+S + G    A  +D+            N    KK + 
Sbjct: 1389 KKAEIPS-------------DGLSLSAGFDWTASILDQAQEEEESEEDQENFTENKKHKH 1435

Query: 1525 EEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIA 1584
            + R+++I   +   +   AP +  +FERL+  +PNSS +W+ YMAF L ++++EKAR +A
Sbjct: 1436 KRRKEKIVQDKTIDINTRAPESVADFERLIIGNPNSSVLWMNYMAFQLQLSEIEKARELA 1495

Query: 1585 ERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1644
            ERAL+TIN REE EKLNIW+A  NLEN +G   EE +  VF RA QY D   +H  LLG+
Sbjct: 1496 ERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEDVFYRACQYMDSYIIHTKLLGI 1553

Query: 1645 YERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHK 1702
            YE + +   A EL     KKF      +W+     L+   +E   + ++  AL SLP+  
Sbjct: 1554 YEISAKLDKAAELFKTTAKKFGSEKPSIWVSWGDFLISHNEEQEARTILSNALKSLPKRS 1613

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
            HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D   +  LFE
Sbjct: 1614 HIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFE 1673

Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            R I+  +  K+ KF F K+LE+E+S  +E+ +EYVK KA EYV S
Sbjct: 1674 RIITKKITRKQAKFFFNKWLEFEQSQSDEKAVEYVKAKATEYVTS 1718



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 284/1265 (22%), Positives = 535/1265 (42%), Gaps = 174/1265 (13%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL-------------- 46
            + +  G  L G ++ + ++DL I    G+ G   L   +D    IL              
Sbjct: 117  KTLKNGSSLLGQISGITKQDLCITFTDGISGYVNLTHISDVFTSILEDLDEDMDSDAETA 176

Query: 47   --------DNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGK 84
                    D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K
Sbjct: 177  DKTKSKGDDTEYESSDDEDEKNDKSNDLPNLKKYFHIGQWLRCSVIKNTFLEPATKKTKK 236

Query: 85   RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 144
            ++I L++  S +    S E + +   +   +KSIEDHG IL  GLP FTGF+ + +++  
Sbjct: 237  KRIELTIEPSFV-NTYSDEDLVKSTSIQCAIKSIEDHGAILDVGLPDFTGFIAKKDISNF 295

Query: 145  SGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 203
              +   PG +  G + +  DR+  V    SD       ++      SID ++PG +V   
Sbjct: 296  ENL--LPGAVFLGNITKKSDRSIVVNTNFSDKKNRITQIS------SIDAVIPGQIVDLL 347

Query: 204  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 263
             ++I +NGV        +G +++ HL+ +F   + K+ +     +  RI+          
Sbjct: 348  CETITKNGVSGKAFGLVSGVINVSHLR-SFSEEDLKHKFAIGSSIRCRII---------- 396

Query: 264  LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------S 310
                   L N+   S  KV  +     ++R++  L     + + P+             S
Sbjct: 397  -----ACLENK---SGDKVLILSTLPHILRLEDSLKSTEGLDAFPIGYTFESCAVKGRDS 448

Query: 311  TPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 365
               Y+ + D     V    V ++E   K  S    R+LG+  ++ +          +   
Sbjct: 449  DYLYLALDDDRLGKVHSSRVGEIENPEKLSS----RVLGYSPVDDIYQLSTDPKYLKLKY 504

Query: 366  FTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
               +D+  G +    ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G++
Sbjct: 505  LRTNDIPIGELAPSCEITSVSSSGIELKIFNGQFKANVPALHISDTRLVYPERKFKIGSK 564

Query: 424  LVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHG 475
            +  R+L V  +  + +T KK+LV     +  ++S+Y  A +       T   +   + +G
Sbjct: 565  VKGRILSVNLRGNVHMTLKKSLVNIEADESPLVSNYESAKEIKEKNEKTLATVQVFKPNG 624

Query: 476  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
            C + F+ G+ GF P SE+      +P     +GQ V  +++      RRI  +  +   +
Sbjct: 625  CVISFFGGLSGFLPNSEISEVFVKKPEEHLRLGQTVVVKLLDVDADRRRIIATCKVSNEQ 684

Query: 536  VSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVM 589
             ++     +++V   +L++  V   T  +V+V +      +G I   HL+D  +E     
Sbjct: 685  AAQQKDTIENIVPGRTLITVSVIEKTKESVIVEIPGVNL-RGVIYAGHLSDARIEQNRAQ 743

Query: 590  KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGY 643
               I+ G E   L++  D  +    ++ K SLI  A++  LP    D  +I  +  +H Y
Sbjct: 744  LKKIRIGAELTGLVIDKDTRTRVFNMTLKSSLIKDAKKKTLPLTYDDVKNIKKDVPMHAY 803

Query: 644  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703
            + +I + G FV F G+  G    S AVD +  D++KT+Y+ QSV   +L  + +  +  L
Sbjct: 804  IKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDINKTFYINQSVTVYLLRTDDQNQKFLL 863

Query: 704  SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESN 761
            SLK            +E   +E  I     S  + S   W +   IGSV++ K+   + N
Sbjct: 864  SLKA-------PKVKEEKKQVESNI----ESPIDSSIKTW-DDISIGSVVKAKIKSVKKN 911

Query: 762  DFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVD 810
               V+++   H         D Y  I   +   +  +   VIQ  I+   DV K+ + + 
Sbjct: 912  QLNVILAANLHGRVDIAEVFDTYEEIKDKKQPLSHYKKDDVIQVKIIGNHDV-KSHKFLP 970

Query: 811  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYN 869
            ++ +         +    + + K+   +  +++ V + +   V     N+L L++ P   
Sbjct: 971  ITHRISKASILELSMKPLELKSKETHTKTLEEIKVGEELTGFVNNSSGNHLWLTISPVLK 1030

Query: 870  HSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSK 928
              I    +++ +T +F +    N +SV     AL    ++       + AI +T      
Sbjct: 1031 ARISLLDLTENDT-RFSE----NVESVFPLGSALQVKVASVDHEHGFINAIGKTHVDVD- 1084

Query: 929  RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 988
                 S+  V   +   +  +    + L  G    G   IT+  DD S  ++  F + KI
Sbjct: 1085 ----MSTIKVADELPGRVLNVAEKYVLLDLGNKVTGISFITDALDDFSISLKEAFQD-KI 1139

Query: 989  GQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK 1048
               +   ++A  N  + K     ELS++ +      I S       DV  G  V G +  
Sbjct: 1140 NNVIPTTVLA-VNAENKK----IELSLRSATPKSRSINS-----HNDVKQGDIVDGIIKN 1189

Query: 1049 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1108
            V+++   + +S+ ++A  F+  +    S L+E+++ +   + V G V++ +++ + + L 
Sbjct: 1190 VNDKGIFVYLSKKVEA--FVPVTKLSDSYLKEWKKFYKPMQYVVGKVVTCSEDSR-ISLT 1246

Query: 1109 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHF 1166
            LR      S+   D+      + I  GDI  G +  +     G+ V++    +  G  H 
Sbjct: 1247 LRE-----SEVNGDLKVLKSYSDIKAGDIFDGTVKNVTD--FGVFVKLDNTVNATGLAHV 1299

Query: 1167 TELKN 1171
            TE+ +
Sbjct: 1300 TEIAD 1304



 Score = 44.3 bits (103), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 13/158 (8%)

Query: 1261 VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1319
            + +V+S G  + + + +  A V   ++SD  +  PE++F IG  V GR+LSV  L   V 
Sbjct: 521  ITSVSSSGIELKIFNGQFKANVPALHISDTRLVYPERKFKIGSKVKGRILSVN-LRGNVH 579

Query: 1320 VTLKTS-DSRTASQSEINNLSNLHVG-------DIVIGQIKRVESYGLFITIENTNLVGL 1371
            +TLK S  +  A +S +  +SN           +  +  ++  +  G  I+     L G 
Sbjct: 580  MTLKKSLVNIEADESPL--VSNYESAKEIKEKNEKTLATVQVFKPNGCVISFFG-GLSGF 636

Query: 1372 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
               SE+SE  V   E   R G+ V VK+L VD ++RRI
Sbjct: 637  LPNSEISEVFVKKPEEHLRLGQTVVVKLLDVDADRRRI 674



 Score = 42.0 bits (97), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 107/246 (43%), Gaps = 38/246 (15%)

Query: 185  DLKGISIDLLVPGMMVSTRVQSILEN-GVMLSFLTYFTGTVDIF----------HLQNTF 233
            D+  I +   +PG +++   + +L + G  ++ +++ T  +D F           + N  
Sbjct: 1084 DMSTIKVADELPGRVLNVAEKYVLLDLGNKVTGISFITDALDDFSISLKEAFQDKINNVI 1143

Query: 234  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH--VKVGDIYDQSKV 291
            PTT               +L V+  ++ + L+L      +R+  SH  VK GDI D    
Sbjct: 1144 PTT---------------VLAVNAENKKIELSLRSATPKSRSINSHNDVKQGDIVDGIIK 1188

Query: 292  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 351
               D+G+ + L          A+V ++ +++  +++ +K YK    V  +++     +  
Sbjct: 1189 NVNDKGIFVYL-----SKKVEAFVPVTKLSDSYLKEWKKFYKPMQYVVGKVVTCSE-DSR 1242

Query: 352  ATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
             +  L+ S   G   ++ ++SD+K G +  G V  V  FG  V+    V A   L H++E
Sbjct: 1243 ISLTLRESEVNGDLKVLKSYSDIKAGDIFDGTVKNVTDFGVFVKLDNTVNA-TGLAHVTE 1301

Query: 409  FEIVKP 414
                KP
Sbjct: 1302 IADKKP 1307


>gi|367003163|ref|XP_003686315.1| hypothetical protein TPHA_0G00450 [Tetrapisispora phaffii CBS 4417]
 gi|357524616|emb|CCE63881.1| hypothetical protein TPHA_0G00450 [Tetrapisispora phaffii CBS 4417]
          Length = 1706

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 358/1260 (28%), Positives = 593/1260 (47%), Gaps = 181/1260 (14%)

Query: 607  NESSNLLLSAKYSLINSAQQLP-------SDASHI-HPNSVVHGYVCNIIETGCFVRFLG 658
            N+  ++ ++ K +L+N+             DA+ +   NS     V      G  + F G
Sbjct: 560  NDRGHIFVTLKKTLVNTTDDDDFTIITSYDDATAVKESNSKTIATVLQFRPAGAVISFFG 619

Query: 659  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 718
             + GF P S+  +       +   +GQ+V   +L+V+ E  RI  + K S   S +   +
Sbjct: 620  GVRGFIPNSEISEAFVRRPEEHLRLGQTVIVKLLEVSGERSRIVGTCKVSAAKSAEQKDL 679

Query: 719  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYG 777
                                     ++ F++G ++I+ +V E     V+V  ++ S++ G
Sbjct: 680  -------------------------IKSFVLGRTIIDVEVIEKTKESVLVELKD-SELRG 713

Query: 778  FITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 827
             I    L+ + +E           GS ++  I+D+    ++ ++SLK   I   ++A   
Sbjct: 714  VINVGHLSDSRIEQNRAELKKIRIGSKLRGLIIDIDSKTQIFNMSLKKSLI---KDAEKE 770

Query: 828  RQAQKKKRKREASKDLGVHQTVNAIVE---IVKEN--YLVLSLPEY---NHSIGYASVSD 879
                  ++     K   +H  V ++      V  N  ++ L LP +   +  I   S+  
Sbjct: 771  ILPINYQQIVSVGKSTPLHGYVKSVSNKGVFVAFNGKFVGLVLPNFAVESRKIDINSIYY 830

Query: 880  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL-----KAISETETSSSKRAKKKS 934
             N            QSV A ++         R LL L     K    T T +S      S
Sbjct: 831  VN------------QSVTAYLLRFDDGKE--RFLLSLRDEKPKQKENTITPASLLNPVDS 876

Query: 935  SYD------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNF 986
            S        +G  ++A+IT +K  +L +       GRIHI EV D+   +   ++  SNF
Sbjct: 877  SVSNFADCTLGKFIKAKITAVKKNQLNVNIADNLFGRIHIAEVYDNLKQIKDAKHPLSNF 936

Query: 987  KIGQTVTARIIA---------KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1037
            K+G  V  ++I           S   ++K   + EL++KPS +  +E+    L +  D+ 
Sbjct: 937  KVGDIVNVKVIGLHDFVNHKFVSKFSELKAKSILELTMKPSEMKSNEVK---LLKASDLE 993

Query: 1038 IGQRVTGYVYKVDNE--WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            +GQ + G+V  V +   W  +T S H +   F L      S  +       IG A+   +
Sbjct: 994  VGQDIVGFVNNVKDSTIWLSITPSLHARLSSFNLTENSNDSNGESL-----IGSALKVQI 1048

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1155
             SI+ +     L+++   D + D             I+ G  V  +I K+   +  L ++
Sbjct: 1049 KSIDSKNN--SLIVKTESDSVVD-------------INVGSTVDAKIVKVTDKLVLLQLR 1093

Query: 1156 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1215
             G +              ++D L  Y +     + G    + +   VL  +        +
Sbjct: 1094 NGSNAVS----------YITDALDDYSK-TLPEVYGNMISKIIPATVLAFNAE---NNKI 1139

Query: 1216 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1275
            +LSLRS   G  S            P  H     DL PN IV   VKNVT KG F+ LS 
Sbjct: 1140 KLSLRSK--GAYSL-----------PTVHT----DLKPNDIVNAIVKNVTEKGIFVALSS 1182

Query: 1276 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1335
             LDA V +S LSD Y++  +  F   + V G+V++    S R+ +TLK S+     Q  +
Sbjct: 1183 NLDAFVPISKLSDSYLKEWKAFFKPMQPVVGKVVTCANNS-RILLTLKESEVNGEIQI-L 1240

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEK 1394
             N +++ VGDI  G +K V  +G+F+ ++NT N+ GL H SE++E   +++++++  G+K
Sbjct: 1241 KNYNDIKVGDIFSGVVKNVADFGVFVKLDNTLNVSGLAHSSEVAESVPEDLQSLFGPGDK 1300

Query: 1395 VKVKILKVDKEKRRISLGMKSSYFK--NDADNLQMSSEEESDEAIEEVGSYNRS---SLL 1449
            VK  +LKV+ EK+++SL +K+S+F   N   +   SS+E+ D  +E+    N S   S +
Sbjct: 1301 VKAYVLKVNPEKKQLSLSLKASHFSKTNSGKSANDSSDEDGDVIMEDAEYNNVSDAGSDV 1360

Query: 1450 ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1509
            E+++  +    + S DG SL  A  +  A +      LD  Q D ++   ++   T    
Sbjct: 1361 EDTTTVITKQAVMSTDGLSLS-AGFDWTAKI------LDQAQSDDESEEDEDFTET---- 1409

Query: 1510 TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMA 1569
                K NRH KK+     ++ I       +   AP +  +FERL+  +PNSS VW+ YMA
Sbjct: 1410 ----KKNRHRKKRAHVVEDKTID------INTRAPESVGDFERLIMGNPNSSVVWMNYMA 1459

Query: 1570 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1629
            F L +++++KAR I+ERAL+TIN REE EKLNIW+A  NLEN +G+  EE +  VF++A 
Sbjct: 1460 FQLQLSEIDKAREISERALKTINFREEAEKLNIWIAKLNLENTFGS--EETLEDVFKKAC 1517

Query: 1630 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEG-V 1687
            QY D   +H  LL + + + Q     EL     KKF      +W+     L+ Q+Q    
Sbjct: 1518 QYMDSFTIHSKLLSILQMSGQTNKTAELFKTTAKKFGSEKVSIWVSWGDWLISQKQSNEA 1577

Query: 1688 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1747
            + ++  AL +LP+  HI+ + + A LE+  G  +RGRS+FEG++++  KR D+W++Y+DQ
Sbjct: 1578 RNILSSALKALPKRHHIEVVRKFAQLEYAKGDPERGRSLFEGLIADAGKRIDIWNVYIDQ 1637

Query: 1748 EIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            EI++ D   +  LFER I   +  K+ KF F K+L+YE+   +E+ I YVK KA E+ ES
Sbjct: 1638 EIKVDDKKKVEDLFERVIQKKITRKQAKFFFNKWLQYEEGKEDEKAIGYVKAKATEFAES 1697



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 316/1341 (23%), Positives = 554/1341 (41%), Gaps = 217/1341 (16%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANED-------- 55
            +N+  G +L G ++ +   DL I    G+ G     +  + I D   + +E+        
Sbjct: 114  KNLKVGSQLLGQISSITRNDLRISFTDGINGYVPITNISEQITDILTQIDEEMADSSDDS 173

Query: 56   ----------------------NLLPTIFHVGQLVSCIVLQ---LDDDKKEIGKRKIWLS 90
                                  NL+  +F VGQ + C V +   LD   K+  KR++ LS
Sbjct: 174  DSDEEYESSDDKSEKKKLTEKPNLID-LFKVGQWLRCSVTENTALDATTKK--KRRLELS 230

Query: 91   LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK 150
            +  S +    S + + +   +   VKSIEDHG IL  G+ +FTGF+ + +    +  ++K
Sbjct: 231  IEPSAV-NTFSADDLNKFSTVQCSVKSIEDHGAILDLGISNFTGFISKKD--SKTFDNLK 287

Query: 151  PG-LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 209
            PG + L  ++   DRT  V  + S  + VS          SID +VPG +V    + I  
Sbjct: 288  PGHVFLANIINKSDRTVTVNQVFSKKNKVSHIS-------SIDCVVPGQLVEFLSEKIGG 340

Query: 210  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA---VGLTL 266
            NG+         G +   HL+ TF     K  +   + V ARI+ + P       + L+ 
Sbjct: 341  NGIFGKAFGSIAGYITDIHLE-TFSEEKLKEKFPVGQNVPARIIAILPNKEGDNVLLLSA 399

Query: 267  NPYLLHNRAPPSHVK------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 320
              +++   +  S ++      +G  +D + +   D    L L + +  V       I   
Sbjct: 400  QTHIISLTSVLSEIENLEAFPIGYTFDSATIKGRDSSF-LYLTLDNERVGQVHNKNIGSA 458

Query: 321  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG- 379
             E E             +  R+LG+  ++                    D+K G V+   
Sbjct: 459  LESE------------KISARVLGYTSVDNAFQLSTDPEMLAKKYVRAIDIKIGEVLTNC 506

Query: 380  KVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RIT 437
            ++ AV + G  ++  GG   A  P  H+S+ ++V P +KFK+ +++  RVL V  +  I 
Sbjct: 507  EITAVSTEGIQLKLFGGQFTAFVPPLHISDTKLVYPERKFKIASKVKGRVLNVNDRGHIF 566

Query: 438  VTHKKTLVKSK----LAILSSYAEAT----DRLITHGWITKIEKHGCFVRFYNGVQGFAP 489
            VT KKTLV +       I++SY +AT        T   + +    G  + F+ GV+GF P
Sbjct: 567  VTLKKTLVNTTDDDDFTIITSYDDATAVKESNSKTIATVLQFRPAGAVISFFGGVRGFIP 626

Query: 490  RSELGLDPGCEPSSMYHVGQVVKCRIMS-SIPASRRINLSFMMKPTRVSEDDLVKLGSLV 548
             SE+       P     +GQ V  +++  S   SR +    +       + DL+K   L 
Sbjct: 627  NSEISEAFVRRPEEHLRLGQTVIVKLLEVSGERSRIVGTCKVSAAKSAEQKDLIKSFVLG 686

Query: 549  SGVVDV----VTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLL 603
              ++DV     T  +V+V  +     +G I   HL+D  +E        I+ G +   L+
Sbjct: 687  RTIIDVEVIEKTKESVLVE-LKDSELRGVINVGHLSDSRIEQNRAELKKIRIGSKLRGLI 745

Query: 604  V-LDNESSNLLLSAKYSLINSAQQ--LPSDASHI---HPNSVVHGYVCNIIETGCFVRFL 657
            + +D+++    +S K SLI  A++  LP +   I     ++ +HGYV ++   G FV F 
Sbjct: 746  IDIDSKTQIFNMSLKKSLIKDAEKEILPINYQQIVSVGKSTPLHGYVKSVSNKGVFVAFN 805

Query: 658  GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL-----KQSCCSS 712
            G+  G    + AV+ ++ D++  YYV QSV + +L  +    R  LSL     KQ   + 
Sbjct: 806  GKFVGLVLPNFAVESRKIDINSIYYVNQSVTAYLLRFDDGKERFLLSLRDEKPKQKENTI 865

Query: 713  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 772
            T AS +            + SS  N ++        +G  I+ K+       + V+  ++
Sbjct: 866  TPASLLNP----------VDSSVSNFADC------TLGKFIKAKITAVKKNQLNVNIADN 909

Query: 773  -------SDVYGFITH-----HQLAGATVESGSVIQAAILDV--------------AKAE 806
                   ++VY  +       H L+   V  G ++   ++ +               KA+
Sbjct: 910  LFGRIHIAEVYDNLKQIKDAKHPLSNFKV--GDIVNVKVIGLHDFVNHKFVSKFSELKAK 967

Query: 807  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 866
             +++L++K        E  SN      + K   + DL V Q +   V  VK++ + LS+ 
Sbjct: 968  SILELTMKP------SEMKSN------EVKLLKASDLEVGQDIVGFVNNVKDSTIWLSIT 1015

Query: 867  EYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS 926
               H    A +S +N  +       NG+S+I + + +            +K+I     S 
Sbjct: 1016 PSLH----ARLSSFNLTENSNDS--NGESLIGSALKVQ-----------IKSIDSKNNSL 1058

Query: 927  SKRAKKKSSYD--VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 984
              + +  S  D  VGS V A+I ++    + L+   G +   +IT+  DD S  +  ++ 
Sbjct: 1059 IVKTESDSVVDINVGSTVDAKIVKVTDKLVLLQLRNGSNAVSYITDALDDYSKTLPEVYG 1118

Query: 985  NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1044
            N  I + + A ++A + + +  K     LS++      S+    L     D+     V  
Sbjct: 1119 NM-ISKIIPATVLAFNAENNKIK-----LSLR------SKGAYSLPTVHTDLKPNDIVNA 1166

Query: 1045 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1104
             V  V  +   + +S +L A  F+  S    S L+E++  F   + V G V++     ++
Sbjct: 1167 IVKNVTEKGIFVALSSNLDA--FVPISKLSDSYLKEWKAFFKPMQPVVGKVVTCANNSRI 1224

Query: 1105 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL--YG 1162
            L L L+  +     + +   ND     I  GDI  G +  +     G+ V++   L   G
Sbjct: 1225 L-LTLKESEVNGEIQILKNYND-----IKVGDIFSGVVKNVAD--FGVFVKLDNTLNVSG 1276

Query: 1163 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1222
              H +E+      D  S      F P      G  VK  VL+++   +    + LSL++S
Sbjct: 1277 LAHSSEVAESVPEDLQS-----LFGP------GDKVKAYVLKVNPEKK---QLSLSLKAS 1322

Query: 1223 L-----DGMSSTNSSDLSTDV 1238
                   G S+ +SSD   DV
Sbjct: 1323 HFSKTNSGKSANDSSDEDGDV 1343


>gi|340959662|gb|EGS20843.1| hypothetical protein CTHT_0026810 [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1796

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 393/1529 (25%), Positives = 714/1529 (46%), Gaps = 204/1529 (13%)

Query: 363  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKA--LCPLPHMSEFEIVKPGKKF 418
            G V  H DV   +V  G     D    + Q+  G  VKA  +C  P  +         K 
Sbjct: 366  GKVMGHLDVTADIVHSGS--GPDGADLVNQYKVGSRVKARVICNFPTAN---------KP 414

Query: 419  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCF 477
            K+G  L+  VL +K K        T  K    +L +   A   +I    + ++E   G +
Sbjct: 415  KLGISLLPHVLSLKPK--------TTTKDGQEVLPTDVLAHSAIIQECRVERVEPGIGLY 466

Query: 478  VRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SF 529
            V     GV GF   S +    +D   E S  Y +G V   R++  +S      ++L  S 
Sbjct: 467  VNVGVEGVSGFVHISRVKDGKIDTLFENSGPYKIGSVHPGRVVGYNSFDGVYLLSLEKSV 526

Query: 530  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLE 584
            + +P    ED  + +G++VSG V+ +  N      ++  IA+G S G +P  H++D HL+
Sbjct: 527  LEQPFLRIED--IPIGAVVSGQVEKLVVNTQGFGGLIVKIAEGIS-GLVPEMHVSDVHLQ 583

Query: 585  HATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQLPSDASHIHPNSVVHGY 643
            H    +   + G +    ++  N + + + L+ K +L+NS          +       G 
Sbjct: 584  HP---EKKFREGMKVKARVLSTNPARHQVRLTLKKTLVNSDAPAIKSYDELAVGMQAFGT 640

Query: 644  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703
            +  +++ G  V+F G+L GF P S+  +    D  + + VGQ+V   +L  + E  R+ +
Sbjct: 641  IVAVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPKEHFRVGQTVSIYVLSFDPEVARLIV 700

Query: 704  SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 763
            S K               F LE+++A+ +                +G V+  KV +  + 
Sbjct: 701  SCKDPSA-----------FGLEKQLALKK--------------LQVGDVVSAKVTQKTED 735

Query: 764  GVVVSFEEHSDVYGFITHHQLAGATVE-----------SGSVIQAAILDVAKAERLVDLS 812
             V V   + S +   +    L   +V            + ++ +  +L+  +  R + LS
Sbjct: 736  DVFVELID-SSLKAILPVGHLTDKSVNKTQAALKRIHVNQTLTELVVLEKNEGRRSIILS 794

Query: 813  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 872
             K   +          QA K+ +      D  + + V   V  +  +   +       ++
Sbjct: 795  HKPSLV----------QAGKEGKLISTVDDARLGEQVPGFVRNITASAAFVQFGSKLTAL 844

Query: 873  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK 932
               S+   +    P       QS++  + ++      GRL++ + + ++ E+   ++   
Sbjct: 845  LPKSLMPQDWHDKPNFGLHKYQSLLVKITSI--DKELGRLVVAIPSAADQESKKPEKPAD 902

Query: 933  KS------------SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE 980
            ++               +G L +A +  +K  +L ++      GRI ++++ D   ++ +
Sbjct: 903  QAVNPLDETVTTMADLTIGKLTKARVRAVKETQLNVEIADNIQGRIDVSQIFDKWEDIPD 962

Query: 981  --NLFSNFKIGQTVTARII----AKSNK--PDMKKS--FLWELSIKPSMLTVSEIGSKLL 1030
                   FK    +  R++    A++++  P   +S   + ELS KPS +    +   L 
Sbjct: 963  PRRPLKRFKPKDIIDVRVLGIHDARNHRFLPITHRSSHAVLELSAKPSDVQAPSLPEPLS 1022

Query: 1031 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1090
             E+ +V  G     +V  V + +  + +S +++ ++  ++++ + S+L   +R F IG A
Sbjct: 1023 LEKIEV--GSTHLAFVNNVASNYLWVNLSPNVRGRISAMEASNDLSKLANLERSFPIGCA 1080

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
            +   VLS++KEK  + L         S +T   S++     I +G ++  +++KI     
Sbjct: 1081 LKVRVLSVDKEKSRVDL---------SARTPGASHELTWDMIEQGMVLPAKVTKINDR-- 1129

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
             ++V++   + G VH  +L +         YDE   +PLS + + + V+  V+E+ ++ +
Sbjct: 1130 QVIVKLSESVAGPVHLPDLAD--------DYDEA--NPLS-HSKFEIVRVAVVEVDKSNK 1178

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
                + LS+R S           L++ +    + + K   L    I++G+VKNV+ KG F
Sbjct: 1179 ---KLRLSMRPS---------RVLNSSLPIKDREITKNTKLQVGDIIRGFVKNVSDKGLF 1226

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            + L   + A V + NLSD Y++  ++ F + +LV GR++S+     R+E++LK S     
Sbjct: 1227 VNLGGDVVALVKIKNLSDSYLKDWKEHFQVDQLVKGRIISLA--DGRIEMSLKQSVVEKD 1284

Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN-LVGLCHVSELSEDHVDNIETIY 1389
                I  +S+L  G  V G++++VE +G FI I+ ++ L GLCH SE+++  V +  T+Y
Sbjct: 1285 YVPPIT-ISDLKEGQTVTGKVRKVEEFGAFIDIDGSDRLSGLCHRSEMADRMVQDARTLY 1343

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN-------------LQMSSEEESDEA 1436
              G++VK ++LKVD E +RI+LG+K SYFK+  ++             L   ++ +SDE 
Sbjct: 1344 NEGDRVKARVLKVDVENKRINLGLKPSYFKDGDEDDVDVDSDSDAGAALNGGADSDSDEE 1403

Query: 1437 IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDN 1496
            + ++G        ++ S   +D D+E  +     L  +E+         NLD        
Sbjct: 1404 MSDIGGALVVGESDDESDEEKDSDIEMTEAPEEGLIGLEA-GGFDWAAANLD-------- 1454

Query: 1497 GISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS 1556
              + + G+ D A+           KK K+ RE +    +   L+ + P+T  +FERL+  
Sbjct: 1455 --ADDHGNADVAEV--------PSKKAKKRREPQGIVDKTAELDVNGPQTASDFERLLLG 1504

Query: 1557 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1616
             P+SS +WI YMA  + + D+  AR IAERAL+TINIREE EKLN+W+AY NLE  YG  
Sbjct: 1505 QPDSSELWIAYMASQMQVNDLSSARQIAERALKTINIREETEKLNVWIAYLNLEVAYGT- 1563

Query: 1617 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRR 1675
             +E V +VF+RA  Y D ++VH  L  +Y ++ + K A++L  K++KK+   +  VW   
Sbjct: 1564 -DETVQEVFKRACTYNDDREVHERLASIYIQSGKYKEAEDLFEKIVKKYGSEAPHVWYNY 1622

Query: 1676 VQRLLKQ--QQEGVQAVVQRA--LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEG 1729
               L  +  + E  +A+++RA  +L   +  ++  + + A LEF+  NG  ++GR++FE 
Sbjct: 1623 AHFLHTKSNKPEQARALLKRATQVLGNTKDTYLYLLPKFAALEFRSPNGDREQGRTLFEK 1682

Query: 1730 ILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERAISL-SLPPKKMKFLFKKY 1781
            +L+ YPKR DLW+  LD E           D  +IR LFER   +  L P++ K  F+++
Sbjct: 1683 LLATYPKRFDLWNQLLDLETSASSVAKNPADPSVIRDLFERGTKVKGLRPRQAKAWFRRW 1742

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
             ++E+  G+ +  E V  KA E+  +  A
Sbjct: 1743 AQWEEKFGDAKSREKVSAKAQEWARAKAA 1771



 Score =  196 bits (497), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 195/704 (27%), Positives = 318/704 (45%), Gaps = 45/704 (6%)

Query: 47  DNEIEANEDNL----LPTIFHVGQLVSC-IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS 101
           D E   +E+NL    +    H+GQ V   +V  +D+      +R I LSL  +    GLS
Sbjct: 191 DGEESGDENNLDDIDINLFVHLGQYVRAYVVSTIDESVAGKTRRHIELSLYPAHANSGLS 250

Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPGLLLQGV 158
            + +     L A V S+EDHG+++  G+      GFLPR  L  +   + V+PG +L  +
Sbjct: 251 EQDIVLNSTLMASVVSVEDHGFVMDIGISDSQLKGFLPRKQLDPSIPEETVQPGSVLLCI 310

Query: 159 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
           V     + KVV LS+  D +        +  +ID  +PG      V  +  +G++   + 
Sbjct: 311 VTGKAASGKVVQLSTLVDRLGNPKHFPAEATTIDTFLPGTAAEVLVSEVHTHGLVGKVMG 370

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLHNRAP 276
           +   T DI H  +     +  N Y    +V AR++   PT+    +G++L P++L  + P
Sbjct: 371 HLDVTADIVHSGSGPDGADLVNQYKVGSRVKARVICNFPTANKPKLGISLLPHVLSLK-P 429

Query: 277 PSHVKVGD------------IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 324
            +  K G             I  + +V RV+ G+GL +++    VS   +V IS V + +
Sbjct: 430 KTTTKDGQEVLPTDVLAHSAIIQECRVERVEPGIGLYVNVGVEGVS--GFVHISRVKDGK 487

Query: 325 VRKL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 381
           +  L      YK GS    R++G+   +G+    L+ S  E       D+  G VV G+V
Sbjct: 488 IDTLFENSGPYKIGSVHPGRVVGYNSFDGVYLLSLEKSVLEQPFLRIEDIPIGAVVSGQV 547

Query: 382 ----IAVDSFGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR- 435
               +    FG  IV+   G+  L P  H+S+  +  P KKF+ G ++  RVL     R 
Sbjct: 548 EKLVVNTQGFGGLIVKIAEGISGLVPEMHVSDVHLQHPEKKFREGMKVKARVLSTNPARH 607

Query: 436 -ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 494
            + +T KKTLV S    + SY E    +   G I  + +HG  V+FY  ++GF P SE+ 
Sbjct: 608 QVRLTLKKTLVNSDAPAIKSYDELAVGMQAFGTIVAVLQHGAIVQFYGQLRGFLPVSEMS 667

Query: 495 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSG 550
                +P   + VGQ V   ++S  P   R+ +S         E  L    +++G +VS 
Sbjct: 668 EAYIHDPKEHFRVGQTVSIYVLSFDPEVARLIVSCKDPSAFGLEKQLALKKLQVGDVVSA 727

Query: 551 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NE 608
            V   T + V V +I     K  +P  HL D   + T      I       +L+VL+ NE
Sbjct: 728 KVTQKTEDDVFVELIDSSL-KAILPVGHLTDKSVNKTQAALKRIHVNQTLTELVVLEKNE 786

Query: 609 S-SNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 665
              +++LS K SL+ + ++  L S          V G+V NI  +  FV+F  +LT   P
Sbjct: 787 GRRSIILSHKPSLVQAGKEGKLISTVDDARLGEQVPGFVRNITASAAFVQFGSKLTALLP 846

Query: 666 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
           +S          +   +  QS+   I  ++ E GR+ +++  + 
Sbjct: 847 KSLMPQDWHDKPNFGLHKYQSLLVKITSIDKELGRLVVAIPSAA 890



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 182/868 (20%), Positives = 322/868 (37%), Gaps = 183/868 (21%)

Query: 6    ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVG 65
            ++ GM+ +G +  V +   ++   G LRG    ++  +  + +  E          F VG
Sbjct: 631  LAVGMQAFGTIVAVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPKEH---------FRVG 681

Query: 66   QLVSCIVLQLDDDKKEIGKRKIWLSLRLSL-LYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
            Q VS  VL  D    E+ +  +      +  L K L+L+ +Q G V++A V    +    
Sbjct: 682  QTVSIYVLSFD---PEVARLIVSCKDPSAFGLEKQLALKKLQVGDVVSAKVTQKTEDDVF 738

Query: 125  LHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVYLSSDPD 176
            +     S    LP  +L + S    +  L        L + VV   +  R+ + LS  P 
Sbjct: 739  VELIDSSLKAILPVGHLTDKSVNKTQAALKRIHVNQTLTELVVLEKNEGRRSIILSHKPS 798

Query: 177  TVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
             V     K+ K IS +D    G  V   V++I  +   + F +  T       L  +   
Sbjct: 799  LVQ--AGKEGKLISTVDDARLGEQVPGFVRNITASAAFVQFGSKLTAL-----LPKSLMP 851

Query: 236  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 295
             +W      H K N             GL     LL                  K+  +D
Sbjct: 852  QDW------HDKPN------------FGLHKYQSLL-----------------VKITSID 876

Query: 296  RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 355
            + LG L+            V I   A++E +K EK   +                     
Sbjct: 877  KELGRLV------------VAIPSAADQESKKPEKPADQA-------------------- 904

Query: 356  LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIV-- 412
               +  +  V T +D+  G + K +V AV      V+    ++    +  +  ++E +  
Sbjct: 905  --VNPLDETVTTMADLTIGKLTKARVRAVKETQLNVEIADNIQGRIDVSQIFDKWEDIPD 962

Query: 413  --KPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATD----RL 462
              +P K+FK    +  RVLG+   R    + +TH+     S  A+L   A+ +D     L
Sbjct: 963  PRRPLKRFKPKDIIDVRVLGIHDARNHRFLPITHR-----SSHAVLELSAKPSDVQAPSL 1017

Query: 463  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---------------YHV 507
                 + KIE     + F N V        L  +     S+M               + +
Sbjct: 1018 PEPLSLEKIEVGSTHLAFVNNVASNYLWVNLSPNVRGRISAMEASNDLSKLANLERSFPI 1077

Query: 508  GQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLGSLVSGVVDVVTPNAVVVYVI 565
            G  +K R++S      R++LS    P    E   D+++ G ++   V  +    V+V + 
Sbjct: 1078 GCALKVRVLSVDKEKSRVDLS-ARTPGASHELTWDMIEQGMVLPAKVTKINDRQVIVKLS 1136

Query: 566  AKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS-LIN 622
                  G +    LAD  + A  +       +E  ++ V++ + SN  L LS + S ++N
Sbjct: 1137 ES--VAGPVHLPDLADDYDEANPLS---HSKFEIVRVAVVEVDKSNKKLRLSMRPSRVLN 1191

Query: 623  SAQQLPSDASHIHPNS------VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 676
            S+  LP     I  N+      ++ G+V N+ + G FV   G +          D    D
Sbjct: 1192 SS--LPIKDREITKNTKLQVGDIIRGFVKNVSDKGLFVNLGGDVVALVKIKNLSDSYLKD 1249

Query: 677  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 736
              + + V Q V+  I+ +    GRI +SLKQS         +++ ++    I+ L+    
Sbjct: 1250 WKEHFQVDQLVKGRIISLAD--GRIEMSLKQSV--------VEKDYVPPITISDLKE--- 1296

Query: 737  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 791
                         G  + GKV +  +FG  +  +    + G     ++A   V+      
Sbjct: 1297 -------------GQTVTGKVRKVEEFGAFIDIDGSDRLSGLCHRSEMADRMVQDARTLY 1343

Query: 792  --GSVIQAAILDVAKAERLVDLSLKTVF 817
              G  ++A +L V    + ++L LK  +
Sbjct: 1344 NEGDRVKARVLKVDVENKRINLGLKPSY 1371



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 170/377 (45%), Gaps = 46/377 (12%)

Query: 96   LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL----PRNNLAENSGID--V 149
            L + LSLE ++ G    A+V ++  +   ++   P+  G +      N+L++ + ++   
Sbjct: 1017 LPEPLSLEKIEVGSTHLAFVNNVASNYLWVNLS-PNVRGRISAMEASNDLSKLANLERSF 1075

Query: 150  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 209
              G  L+  V S+D+ +  V LS+     S  +T        D++  GM++  +V  I +
Sbjct: 1076 PIGCALKVRVLSVDKEKSRVDLSARTPGASHELT-------WDMIEQGMVLPAKVTKIND 1128

Query: 210  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 269
              V++       G V +  L + +   N  + +++ + V   ++ VD +++ + L++ P 
Sbjct: 1129 RQVIVKLSESVAGPVHLPDLADDYDEANPLS-HSKFEIVRVAVVEVDKSNKKLRLSMRPS 1187

Query: 270  LLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 320
             + N + P         + ++VGDI      V+     GL +++    V   A V I ++
Sbjct: 1188 RVLNSSLPIKDREITKNTKLQVGDII--RGFVKNVSDKGLFVNLGGDVV---ALVKIKNL 1242

Query: 321  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKP 373
            ++  ++  ++ ++    V+ RI+       LA G ++ S  + +V        T SD+K 
Sbjct: 1243 SDSYLKDWKEHFQVDQLVKGRIIS------LADGRIEMSLKQSVVEKDYVPPITISDLKE 1296

Query: 374  GMVVKGKVIAVDSFGAIVQFPGG--VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL-- 429
            G  V GKV  V+ FGA +   G   +  LC    M++  +      +  G  +  RVL  
Sbjct: 1297 GQTVTGKVRKVEEFGAFIDIDGSDRLSGLCHRSEMADRMVQDARTLYNEGDRVKARVLKV 1356

Query: 430  GVKSKRITVTHKKTLVK 446
             V++KRI +  K +  K
Sbjct: 1357 DVENKRINLGLKPSYFK 1373


>gi|226291917|gb|EEH47345.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb18]
          Length = 1780

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 287/918 (31%), Positives = 486/918 (52%), Gaps = 104/918 (11%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARI 996
            G + +A+I  +K  ++ ++      GRI ++E+ D  D     +     FK  Q +  RI
Sbjct: 912  GRITKAKIVSVKETQINVQLADNIQGRIDVSEIFDGWDAIKDRKQPLRYFKPKQIIPVRI 971

Query: 997  I----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1047
            I    A+S+K  P   +S    ++ELS KPS L   +I    L     V IG    G+V 
Sbjct: 972  IGIHDARSHKFLPISHRSGKYPVFELSAKPSSLESKDIE---LLSLDKVEIGSSWLGFVN 1028

Query: 1048 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1107
             + ++   + I+ +++ +L I D + + S + +  + F +G A+  HV  +N +K  L L
Sbjct: 1029 NIGDDCLWINITPNVRGRLRITDVSDDLSLVGDVTKNFPVGSAIKVHVTGVNVDKNRLDL 1088

Query: 1108 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1167
                     S K  D  N    +   +G+I+ GR++K+      ++VQ+     G ++  
Sbjct: 1089 ---------SAKHGDPLNKRTISDFSKGEILLGRVTKVSDR--QVLVQLSDTTVGAINLI 1137

Query: 1168 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1227
            ++ +          D  +  P + + + + ++  +L++    +    + LS+R S     
Sbjct: 1138 DMAD----------DYTKVIP-ANFHKNEVLRVCILDVDVPNK---KILLSVRPS----- 1178

Query: 1228 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1287
                  LS+ +      ++ I  L  N IV+G+V+ V + G F+ L  ++ A V +S+LS
Sbjct: 1179 ----RVLSSSLPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLS 1234

Query: 1288 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV 1347
            D Y++  + EF + +LV GR++ V+  + +++++LK S      ++ I  + +L+ G IV
Sbjct: 1235 DSYLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAPIT-IRDLNRGQIV 1293

Query: 1348 IGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1406
             G+++ VE +G FI I+ T NL GLCH +E++E  V++   ++  G+ VK KILK+D +K
Sbjct: 1294 TGKVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHDK 1353

Query: 1407 RRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDG 1466
             RISLG+K+SYFK         S+++SD    E G  N  S+ E+      +++ ES+D 
Sbjct: 1354 ERISLGLKASYFK--------ESDDKSDGENSEDG--NEQSVSESEDGGELELEFESDDD 1403

Query: 1467 GSLVLAQIESRASVPPLEVNLDDEQPDM----DNGIS----------QNQGHT--DEAKT 1510
             S+    +         E N+ DE   M    D G++             G T  DEA  
Sbjct: 1404 VSMGGVDLGGGDGS---ESNVSDEDVQMAGTEDTGVTGGLVTSGFDWNGSGTTGADEAND 1460

Query: 1511 IDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAF 1570
                ++  A  K+K+ R+ EI+      L+   P++  ++ERL+   P+SS +W+KYMAF
Sbjct: 1461 SGSSSDGQAVLKKKKRRKPEIQVDRTGDLDAHGPQSIADYERLLLGEPDSSLLWLKYMAF 1520

Query: 1571 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1630
             L +++V+KAR IAERAL++I I ++ EK NIW+A  NLEN +GN  ++++  VF+RA Q
Sbjct: 1521 QLELSEVDKAREIAERALRSIRIGQDAEKFNIWIAMLNLENIFGN--DDSLEDVFKRACQ 1578

Query: 1631 YCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRL---LKQQQEG 1686
            Y DP+++H  +  +Y ++ +N+ ADEL    + KKF  S  +++     L   L   Q G
Sbjct: 1579 YNDPQEIHERMTSIYIQSGKNEKADELFQTTLKKKFTQSPNIYINYATFLFDTLADPQRG 1638

Query: 1687 VQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIY 1744
             +A++ RA+ SLP H H+   S+   LEF+  NG  +RGR++FE +LS +PKR DLW++ 
Sbjct: 1639 -RALLPRAIQSLPAHTHVDITSKFGQLEFRSPNGDIERGRTVFEALLSSFPKRVDLWNVL 1697

Query: 1745 LDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLEYEKSV-- 1788
            LD EI+ GD + +R LFER + L               L  K+ KF FKK+L +E+ V  
Sbjct: 1698 LDLEIKNGDAEQVRRLFERVLGLGHGIAADGTKTGPKRLKDKQAKFFFKKWLAFEEKVGG 1757

Query: 1789 GEEERIEYVKQKAMEYVE 1806
            G E+ ++ VK +A  YV+
Sbjct: 1758 GNEKMVDEVKARAAAYVK 1775



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 183/757 (24%), Positives = 311/757 (41%), Gaps = 82/757 (10%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDN---- 56
           + I  G K+ G V+ +N  D+ + LP  L G   L   +      ++  + +NED     
Sbjct: 154 KRIVIGSKVLGQVSSINAHDIGLSLPNNLTGYVPLTSISRTFQQKIEKLLNSNEDENEGS 213

Query: 57  -----------LLPTIFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLRLSLLYKGLSL 102
                       L + F +GQ +   V   + + K     GK+ I LS+       GLS 
Sbjct: 214 DDGDSDDEEDLDLKSYFELGQYLRASVTATESETKNPQTKGKKHIQLSVDPRDANSGLSK 273

Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI-DVKPGLLLQGVV 159
             +     + A V S+EDHG ++  GL      GF+    +  +  +  +K G +   VV
Sbjct: 274 SDMVVNTTVQASVVSVEDHGLVMDLGLDDGQTKGFMSSKEIPPDLEVSQIKEGSVFLCVV 333

Query: 160 RSIDRTRKVVYLSSD-PDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFL 217
              +    VV LS++ P   S   +  L    +I+  +PG      +  +   G+    +
Sbjct: 334 TGHNANGSVVKLSANLPAAGSIKKSHYLTSAPTINSFLPGTAAEILLNEVTSTGMAGKIM 393

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL---------TLNP 268
                 VD+    +T  T N    Y+   K+  R++   PT     L           +P
Sbjct: 394 GMLDAVVDLVQSGSTTGTENLTTKYHVGAKIKGRLICTFPTVEPSKLGFSILEHVVKFSP 453

Query: 269 YLLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
            +L   +    +  V  I  ++KV +V+ GLG+ +   +          +SD   + +  
Sbjct: 454 TVLEQYSTSEDIPAVSAIVPEAKVTKVEPGLGVYVQFNNKHYGFVHISRLSDDKVDSISA 513

Query: 328 LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IA 383
            +  YK  S    RI+GF  L+ L     +    +       DV  G VVKGK+      
Sbjct: 514 TQGPYKVDSTHEARIVGFSALDNLYLLSFERKVIDQPFLRLEDVTVGAVVKGKIEKLLTG 573

Query: 384 VDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 440
            D   G IV    G+  L P  H+S+ ++  P +KF+ G ++  R+L V  + +++ +T 
Sbjct: 574 PDGIDGLIVSLADGISGLVPRMHLSDTKLQHPERKFREGTQVSARILSVNLEKRQLRLTL 633

Query: 441 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
           KK+L+ S+      Y++      + G I  I  HG  V+FY  V+              E
Sbjct: 634 KKSLLNSESPAWKEYSDILPGNQSPGTIISIHPHGAIVQFYGEVR--------------E 679

Query: 501 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV 560
              +     VV C+  S+   + + N    ++P           G LVS  V   +   +
Sbjct: 680 VRKL-----VVSCKDPSTSTETYK-NAFENIQP-----------GDLVSCTVFEKSKEVI 722

Query: 561 VVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SA 616
           ++ +   G     +  EH+ D    +H + + + I+ G +   L++L  +  + L+  S 
Sbjct: 723 LLRLEGSGLV-ARLNAEHVTDGQSSKHGSAL-ACIRVGQKLHDLVILSMQKVHRLIKVSN 780

Query: 617 KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 674
           K SL  + Q  +LP+        S V G+V NII  G FV FL  LTGF P+    D   
Sbjct: 781 KPSLKQARQRGELPAKFEDFQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHV 840

Query: 675 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           A     Y + Q++ S +  +  +  R TLS+K++  S
Sbjct: 841 AKPDFGYTLSQTISSFVHSIEDDRQRFTLSMKENQTS 877



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 120/508 (23%), Positives = 204/508 (40%), Gaps = 110/508 (21%)

Query: 943  QAEITEIKP-LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 1001
            +A++T+++P L + ++F    +G +HI+ ++DDK + +      +K+  T  ARI+  S 
Sbjct: 474  EAKVTKVEPGLGVYVQFNNKHYGFVHISRLSDDKVDSISATQGPYKVDSTHEARIVGFSA 533

Query: 1002 KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1061
              +     L+ LS +  ++       +      DV++G  V G + K      LLT    
Sbjct: 534  LDN-----LYLLSFERKVI------DQPFLRLEDVTVGAVVKGKIEK------LLTGPDG 576

Query: 1062 LKAQLFILD---SAYEP------SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
            +   +  L    S   P      ++LQ  +R+F  G  V+  +LS+N EK+ LRL L+  
Sbjct: 577  IDGLIVSLADGISGLVPRMHLSDTKLQHPERKFREGTQVSARILSVNLEKRQLRLTLKK- 635

Query: 1113 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-----LYGRVHFT 1167
                      + N     +    DI+ G  S       G ++ I PH      YG V   
Sbjct: 636  ---------SLLNSESPAWKEYSDILPGNQSP------GTIISIHPHGAIVQFYGEVR-- 678

Query: 1168 ELKNICVS--DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV-----RGTFHV-ELSL 1219
            E++ + VS  DP S   E   +       G  V C V E S+ V      G+  V  L+ 
Sbjct: 679  EVRKLVVSCKDP-STSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEGSGLVARLNA 737

Query: 1220 RSSLDGMSSTNSSDLST-------------------------------DVDTPGKHLEKI 1248
                DG SS + S L+                                     G+   K 
Sbjct: 738  EHVTDGQSSKHGSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKF 797

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            ED      V G+VKN+ + G F+   R L   +    + D +V  P+  + + + ++  V
Sbjct: 798  EDFQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFV 857

Query: 1309 LSVEPLSKRVEVTLK---TSDSR---------TASQSEIN-------NLSNLHVGDIVIG 1349
             S+E   +R  +++K   TS  R          A+Q+ IN       +  +L  G I   
Sbjct: 858  HSIEDDRQRFTLSMKENQTSKQRVSDNARPASNANQASINPVDGDIKSFDDLTFGRITKA 917

Query: 1350 QIKRVESYGLFITIENTNLVGLCHVSEL 1377
            +I  V+   + + + + N+ G   VSE+
Sbjct: 918  KIVSVKETQINVQLAD-NIQGRIDVSEI 944



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 41/252 (16%)

Query: 602  LLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVR 655
            +L +D  +  +LLS + S + S+  LP         S +  N +V G+V  +   G FV 
Sbjct: 1161 ILDVDVPNKKILLSVRPSRVLSSS-LPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVT 1219

Query: 656  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
                +T +   S   D    D    + V Q V   I+ V++E  ++ +SLK+S       
Sbjct: 1220 LGHEVTAYVRISDLSDSYLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESV------ 1273

Query: 716  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
              ++ ++     I  L                  G ++ GKV    +FG  +  +  +++
Sbjct: 1274 --LEPNYKAPITIRDLNR----------------GQIVTGKVRSVEEFGAFIVIDGTANL 1315

Query: 776  YGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 828
             G     ++A   VE        G +++A IL +   +  + L LK  +   F+E++   
Sbjct: 1316 SGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHDKERISLGLKASY---FKESDDKS 1372

Query: 829  QAQKKKRKREAS 840
              +  +   E S
Sbjct: 1373 DGENSEDGNEQS 1384



 Score = 45.1 bits (105), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 111/288 (38%), Gaps = 68/288 (23%)

Query: 320 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF--EGLVFT-HSDVKPGMV 376
           +++ +++  E+K++EG+ V  RIL     +      LK S    E   +  +SD+ PG  
Sbjct: 597 LSDTKLQHPERKFREGTQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQ 656

Query: 377 VKGKVIAVDSFGAIVQFPGGVKAL------CPLPHMS------EFEIVKPG--------- 415
             G +I++   GAIVQF G V+ +      C  P  S       FE ++PG         
Sbjct: 657 SPGTIISIHPHGAIVQFYGEVREVRKLVVSCKDPSTSTETYKNAFENIQPGDLVSCTVFE 716

Query: 416 ---------------------------KKFKVGAELVFRVLGVK------------SKRI 436
                                      +  K G+ L    +G K             + I
Sbjct: 717 KSKEVILLRLEGSGLVARLNAEHVTDGQSSKHGSALACIRVGQKLHDLVILSMQKVHRLI 776

Query: 437 TVTHKKTL--VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 494
            V++K +L   + +  + + + +  +     G++  I   G FV F  G+ GF P+  + 
Sbjct: 777 KVSNKPSLKQARQRGELPAKFEDFQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMD 836

Query: 495 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT---RVSED 539
            D   +P   Y + Q +   + S     +R  LS     T   RVS++
Sbjct: 837 DDHVAKPDFGYTLSQTISSFVHSIEDDRQRFTLSMKENQTSKQRVSDN 884



 Score = 44.3 bits (103), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 154/369 (41%), Gaps = 31/369 (8%)

Query: 6    ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHV 64
            +  G    G V  + +  L I +   +RG  R  D  D + L  ++  N        F V
Sbjct: 1017 VEIGSSWLGFVNNIGDDCLWINITPNVRGRLRITDVSDDLSLVGDVTKN--------FPV 1068

Query: 65   GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
            G  +   V  ++ DK      ++ LS +        ++    +G +L   V  + D   +
Sbjct: 1069 GSAIKVHVTGVNVDKN-----RLDLSAKHGDPLNKRTISDFSKGEILLGRVTKVSDRQVL 1123

Query: 125  LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR----SIDRTRKVVYLSSDPDTV-- 178
            +     +  G +   ++A++    +        V+R     +D   K + LS  P  V  
Sbjct: 1124 VQLS-DTTVGAINLIDMADDYTKVIPANFHKNEVLRVCILDVDVPNKKILLSVRPSRVLS 1182

Query: 179  SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 238
            S    +D +  SI  L    +V   V+ +  NG+ ++     T  V I  L +++   +W
Sbjct: 1183 SSLPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLSDSY-LKDW 1241

Query: 239  KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPSHVKVGDIYDQSKV---VR 293
            ++++   + V+ RI+FVD  +  + ++L   +L  + +AP   + + D+     V   VR
Sbjct: 1242 QSEFQVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAP---ITIRDLNRGQIVTGKVR 1298

Query: 294  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 353
                 G  + I  T  +       +++AE++V    K +++G  V+ +IL   H +   +
Sbjct: 1299 SVEEFGAFIVIDGT-ANLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHDKERIS 1357

Query: 354  GILKASAFE 362
              LKAS F+
Sbjct: 1358 LGLKASYFK 1366


>gi|336469521|gb|EGO57683.1| hypothetical protein NEUTE1DRAFT_122065 [Neurospora tetrasperma FGSC
            2508]
 gi|350290834|gb|EGZ72048.1| nucleic acid-binding protein [Neurospora tetrasperma FGSC 2509]
          Length = 1774

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 381/1403 (27%), Positives = 666/1403 (47%), Gaps = 193/1403 (13%)

Query: 483  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTR 535
            GV GF   S +    +D   E S  Y VG V   R++  ++      I+L  S + +P  
Sbjct: 465  GVSGFVHISRVKDGKVDALFENSGPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFL 524

Query: 536  VSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 590
              ED  + +G++VSGVV+ +  NA     ++  IA G S G +P  H AD HL++    +
Sbjct: 525  RIED--IPVGAVVSGVVEKMVVNAAGVGGLIVKIADGIS-GLVPEMHFADVHLQNP---E 578

Query: 591  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNI 647
               + G +   ++L  D  S  + L+ K +L+NS   LP+  S+  I       G + N+
Sbjct: 579  KKFREGLKVKARVLSTDAASRQIRLTLKKTLVNS--DLPAIQSYEQIAVGQQALGTIINV 636

Query: 648  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            ++ G  V+F GRL GF P S+  +    D  + + VGQ+V   ++  + +  ++ +S K 
Sbjct: 637  LQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKD 696

Query: 708  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 767
                          F LE+++A+              +   IG V+  KV +  D  V V
Sbjct: 697  PSA-----------FGLEKQLAL--------------KKLQIGDVVSAKVTQKTDDDVFV 731

Query: 768  SFEEHSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLKTVF 817
               + S        H    +  ++ S ++            IL+  +A R + LS K   
Sbjct: 732  ELADSSLKAILPVAHLTDKSVSKTQSALKKIHVNQTLAELVILEKNEARRSIILSQKPSL 791

Query: 818  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYAS 876
            +   +E          +   E S   G  + + A    V+    L   LP+        S
Sbjct: 792  VKASKEGKFLTTLDGARVGDEVS---GYVRNITATAVFVQFGGKLTALLPK--------S 840

Query: 877  VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE----TETSSSKRA-- 930
            +     Q  P       QSV   + ++  ++   RL++ +   +E     ET   K A  
Sbjct: 841  MIPREEQDKPDFGMFKSQSVTVKITSV--NTELNRLVVAIPGAAEQVKKVETKGEKVANP 898

Query: 931  --KKKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLF 983
              +  ++ D   +G L +A I  +K  +L ++      GRI +++V D    +   +   
Sbjct: 899  VDESITTLDDISIGKLTKARIVSVKDTQLNVQLADNIQGRIDVSQVYDSWEQIKDTKKPL 958

Query: 984  SNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECD 1035
              F+  Q V  R++    A++++  P   +S   + ELS KPS +        L F+  +
Sbjct: 959  KKFQPNQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEGASSEPLSFD--N 1016

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            + +G    G+V  V      + +S  ++ ++  ++++ + S L    + F IG A+   V
Sbjct: 1017 LKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSALRVRV 1076

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1155
            +S++ E K L L  R    G  D   +++ D +   +    I+ G+++K+      ++V+
Sbjct: 1077 VSVDAESKRLDLSAR--SPGSED---ELTWDKIAQDV----ILVGKVTKVDER--QVIVK 1125

Query: 1156 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1215
            +   L G VH  +L        +  Y+E   +P + + + + V+  V+E+ ++ +    +
Sbjct: 1126 LSESLAGPVHKIDL--------VDDYEEA--NP-AKFAKNEIVRVAVVEVDKSNK---RI 1171

Query: 1216 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1275
             LS R S           L++ +    K + +   L    I++G+VKNV+ KG F+ L  
Sbjct: 1172 RLSTRPS---------RILNSSLPVKDKEITQNTKLEVGDIIRGFVKNVSDKGLFVTLGG 1222

Query: 1276 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1335
             + A V + NLSD Y++  +++F + +LV GR++SV   + R+E++LK S         +
Sbjct: 1223 NVTAFVQIKNLSDAYLKYWKEQFQVDQLVKGRIISVA--NGRIEMSLKPS-VVDKDYVPL 1279

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEK 1394
              +S+L  G  + G++++VE +G FI I+ + NL GLCH SE+S+  V +   +Y  G+K
Sbjct: 1280 TTISDLKEGQTITGRVRKVEEFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEGDK 1339

Query: 1395 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE----------------EESDEAIE 1438
            VK K+LKVD   +RI+L +K SYF    D  +M  +                 ++D+A++
Sbjct: 1340 VKAKVLKVDVTAKRINLSLKPSYFGEQDDEDEMDVDEEDAEDSEGDDSDEDMSDADDAVQ 1399

Query: 1439 EVGSYN----RSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM 1494
              G+ N         E S V + D D++  + G                           
Sbjct: 1400 ITGTDNVEDESEDEDEASDVEMVDADVKGLEAGGF------------------------- 1434

Query: 1495 DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLV 1554
            D   S   G   +A   D +      KK+K  RE ++   +   L+ D P+T  ++ERL+
Sbjct: 1435 DWSASLEDGEKADASAADLE---ALAKKKKARREPQVTVDKTASLDVDGPQTASDYERLL 1491

Query: 1555 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1614
               PNSS +WI YMAF + ++D+  AR +AERA++TINI+EE EKLN+W+AY NLE  YG
Sbjct: 1492 LGQPNSSQLWIAYMAFQMQVSDLAAARQVAERAIKTINIKEEIEKLNVWIAYLNLEVAYG 1551

Query: 1615 NPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWL 1673
            N  EE V +VF+RA  Y D ++VH  L  +Y ++ + K AD+L  K++K+F + S +VW+
Sbjct: 1552 N--EETVDEVFKRACTYNDKQEVHERLASIYIQSGKRKQADDLFEKIVKEFGYKSPEVWV 1609

Query: 1674 RRVQRL--LKQQQEGVQAVVQRA--LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMF 1727
                 L       +  +A+++RA  +L    H ++  + + A LEF+  NG  ++GR++F
Sbjct: 1610 NYAHFLHTTAHSPDRARALLKRATQVLGKETHMYLALLPKFAALEFRSPNGDKEQGRTLF 1669

Query: 1728 EGILSEYPKRTDLWSIYLDQEIRLGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLEY 1784
            E +L+ YPK+ DLW+  +D E    D D  +IR LF+R   +  L P++ K  F+++ ++
Sbjct: 1670 ENLLATYPKKFDLWNQLIDLETSAADADKGVIRDLFDRGSKVKGLKPRQAKAWFRRWAQW 1729

Query: 1785 EKSVGEEERIEYVKQKAMEYVES 1807
            E+  G+++  E V  KA E+  +
Sbjct: 1730 EEKNGDKKSRERVSAKAQEWART 1752



 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 197/740 (26%), Positives = 337/740 (45%), Gaps = 62/740 (8%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLA-------------RAADALDPILDNEIEANED 55
           G  + G V  +N  D+ + LP  + G                A+   D   ++E E + D
Sbjct: 158 GSLVLGSVCAINSLDIAVALPNNIIGHVPITAISAPLTKRLEASAGNDDAEESEDENDND 217

Query: 56  NLLPTIFHVGQLVSCIVLQLDDDKKE----IGKRKIWLSLRLSLLYKGLSLETVQEGMVL 111
             L ++F +GQ V   V+   D+         KR I LSL+ SL   G++ + V     +
Sbjct: 218 VDLESLFQIGQYVRAYVVSTVDEASTHTPGKAKRHIELSLQPSLANTGMAEQDVVVNSTV 277

Query: 112 TAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKV 168
            A + S+EDHGY++   +      GFL R  + ++   + ++PG +L  +V + +   KV
Sbjct: 278 MAAIASVEDHGYVMDIEIADSKLQGFLARKQVDKSIPQEALQPGAVLLCIV-TKNAKGKV 336

Query: 169 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 228
           V LS+  +T+           +ID  +PG      V  +  +G++   +     T D+ H
Sbjct: 337 VQLSTLGETMGNVENVPSTATTIDTFLPGTAADVLVSEVSSHGIVGKIMGSLDVTADLVH 396

Query: 229 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQ 288
                   + ++ Y    ++ AR++   PT++      +P L  +  P S      I ++
Sbjct: 397 SGAGPDGIDLEDTYKVGSRLKARVICNFPTAK------HPKLGISALPHST-----IVEK 445

Query: 289 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGF 345
             V +V+  +GL +D+    VS   +V IS V + +V  L      YK GS    R++G+
Sbjct: 446 CTVKQVEPEIGLYVDVGVEGVS--GFVHISRVKDGKVDALFENSGPYKVGSVHAGRVVGY 503

Query: 346 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKAL 400
              +G+    L+ S  E       D+  G VV G V  + V++ G    IV+   G+  L
Sbjct: 504 NAFDGMYLISLEKSVLEQPFLRIEDIPVGAVVSGVVEKMVVNAAGVGGLIVKIADGISGL 563

Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAEA 458
            P  H ++  +  P KKF+ G ++  RVL     S++I +T KKTLV S L  + SY + 
Sbjct: 564 VPEMHFADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLTLKKTLVNSDLPAIQSYEQI 623

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
                  G I  + +HG  V+FY  ++GF P SE+      +P   + VGQ V   ++S 
Sbjct: 624 AVGQQALGTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEHFRVGQTVSIYVISF 683

Query: 519 IPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 574
            P + ++ +S         E  L    +++G +VS  V   T + V V  +A    K  +
Sbjct: 684 DPDAAKLIVSCKDPSAFGLEKQLALKKLQIGDVVSAKVTQKTDDDVFVE-LADSSLKAIL 742

Query: 575 PTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLLSAKYSLINSAQQ--- 626
           P  HL D  +  +  +S +K         +L++L+ NE+  +++LS K SL+ ++++   
Sbjct: 743 PVAHLTD--KSVSKTQSALKKIHVNQTLAELVILEKNEARRSIILSQKPSLVKASKEGKF 800

Query: 627 -LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
               D + +     V GYV NI  T  FV+F G+LT   P+S     ++       +  Q
Sbjct: 801 LTTLDGARV--GDEVSGYVRNITATAVFVQFGGKLTALLPKSMIPREEQDKPDFGMFKSQ 858

Query: 686 SVRSNILDVNSETGRITLSL 705
           SV   I  VN+E  R+ +++
Sbjct: 859 SVTVKITSVNTELNRLVVAI 878



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 4/163 (2%)

Query: 374  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
            G +++G V  V   G  V   G V A   + ++S+  +    ++F+V   +  R++ V +
Sbjct: 1201 GDIIRGFVKNVSDKGLFVTLGGNVTAFVQIKNLSDAYLKYWKEQFQVDQLVKGRIISVAN 1260

Query: 434  KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGVQGFAPRS 491
             RI ++ K ++V      L++ ++  +     G + K+E+ G F+       + G   RS
Sbjct: 1261 GRIEMSLKPSVVDKDYVPLTTISDLKEGQTITGRVRKVEEFGAFIDIDGSANLSGLCHRS 1320

Query: 492  ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
            E+      +   +Y  G  VK +++     ++RINLS  +KP+
Sbjct: 1321 EMSDKTVKDARKLYEEGDKVKAKVLKVDVTAKRINLS--LKPS 1361


>gi|296804114|ref|XP_002842909.1| rRNA biogenesis protein RRP5 [Arthroderma otae CBS 113480]
 gi|238845511|gb|EEQ35173.1| rRNA biogenesis protein RRP5 [Arthroderma otae CBS 113480]
          Length = 1819

 Score =  392 bits (1007), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 380/1423 (26%), Positives = 661/1423 (46%), Gaps = 206/1423 (14%)

Query: 485  QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 541
            QGF   S L    +D        Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 498  QGFVHLSRLADERVDSIYSSEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 554

Query: 542  VKL-----GSLVSGVVDV--VTPNAVVVYVIA-KGYSKGTIPTEHLAD-HLEHATVMKSV 592
            ++L     GS V G ++   + P  +   +++      G +P  H+AD  L+H    +  
Sbjct: 555  LRLEDVTVGSTVKGKIEKLHIGPEGIDGLIVSLTDKISGLVPGMHMADTKLQHP---EKK 611

Query: 593  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 651
             + G +   ++L +D +   L L+ K SL+NS      D  +I   +   G +  I   G
Sbjct: 612  FREGLKVSVRVLSVDLQKHQLRLTMKKSLLNSESAPWKDYENISAGNRSPGTLIKIQNNG 671

Query: 652  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
              V+F G + GF P S+  +   +D S+ + VGQ V  + L V+ E G++ +S K     
Sbjct: 672  AVVQFYGPVRGFLPVSEMSEAYISDPSQHFTVGQVVNVHALSVDPENGKLVVSCKDPATV 731

Query: 712  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 771
            + D    Q  F   EKI                     G V+ G V E +   +++  ++
Sbjct: 732  TAD---YQTAF---EKIRP-------------------GLVVSGTVFEKSSDDLLIKLQD 766

Query: 772  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 821
               V    + H   G+  +  S +             +  V K  RL+ ++ +       
Sbjct: 767  SGLVARLNSDHISDGSASKRASALNRIRVGQKMDGLLVYKVKKTHRLIQVTNRVTL---- 822

Query: 822  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 880
                  ++A  + R     +D+     V  ++  I+ E   V  L      I    V D 
Sbjct: 823  ------KEAAAEGRLPAKFEDIKHGLKVTGLIRNIIPEGIFVEFLDNLTGLIPKRLVDDD 876

Query: 881  NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSS---- 935
            +  + P   +   Q + +TV A+   S   R LL LK + ++ ETS +  A +K +    
Sbjct: 877  HISR-PDFGYSRSQVLSSTVCAVQEDSE--RFLLSLKPVGKSKETSEAGSAPEKKTTARP 933

Query: 936  --------------YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE- 980
                            +G + +A+IT +K  +L +       GRI ++E+ D   ++ + 
Sbjct: 934  LTNPVDEELKSMEDITLGKVTKAKITSVKDTQLNVIIAENVQGRIDVSEIFDSWEDIKDR 993

Query: 981  -NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1030
             +    F   Q +  R++   +  + K         K  ++ELS KPS L        L 
Sbjct: 994  KHPLQIFHSKQILPVRVLGIHDARNHKFLPISHRSGKVSVYELSAKPSCLEAPTF-EPLH 1052

Query: 1031 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1090
             E   + +G    GYV  +  +   L IS +++ +L I D + + S     Q+ F +G A
Sbjct: 1053 LER--LKVGDIHIGYVNNIAEDCLWLNISPNVRGRLRITDISDDMSVRGNIQKHFPVGSA 1110

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
            +   V  ++ EK  L L  +    G + KT+ ++N      + +G I+ GR++K+     
Sbjct: 1111 IKVAVAGVDTEKNRLDLSAKI---GDTAKTLTVAN------LSKGMILLGRVTKVTDH-- 1159

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
             ++VQI  ++ G V   ++ +          D  + +P + + + + ++  V+++    +
Sbjct: 1160 QVLVQINDNVVGVVSLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIPNK 1208

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
              +    S+R S           LS+ +      +  I  L    IV+G+++ V + G F
Sbjct: 1209 KIY---FSVRPS---------KILSSSLPVEDPEITSINQLRVGQIVRGFIRRVDNIGVF 1256

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            + L   + A + +S+LSD Y++  + EF + +LV GR+  V+  S ++++TLK S +   
Sbjct: 1257 VTLGHNVSAYIRVSDLSDSYLKEWKDEFQVDQLVQGRITLVDKESNKIQMTLKKS-ALDP 1315

Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1389
            +      L +L VG IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y
Sbjct: 1316 NYKPPFTLKDLKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLY 1375

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKN--------------DADNLQMSSEEESDE 1435
               + VK KILKVD EK +I+LG+K+SYF +              +A  +++ +E++SDE
Sbjct: 1376 EKDDIVKAKILKVDLEKCQIALGLKASYFNDLPAEEESEDSGNDDNAGGIKLHAEDDSDE 1435

Query: 1436 AIEEVG-SYNRSSLLENSSVAVQDMDMESEDG------GSLVLAQIESRASVPPLEVNLD 1488
                 G   +     EN      D D++ ED       G LV +  +             
Sbjct: 1436 DTSMGGVDIDGEDEEENGDEGESDDDVQMEDAADDTKKGGLVTSGFDWTGD------GDK 1489

Query: 1489 DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD 1548
            D+Q   D+  +++ G T                K K+ R+ EI+  +   L+ + P++  
Sbjct: 1490 DKQEVPDDSSAEDDGTT----------------KRKKRRKAEIQVDKTGDLDANGPQSVA 1533

Query: 1549 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1608
            ++ERL+   P+SS +W+KYMAF L + +V+KAR IA+RAL+T++I ++ EKLN+WVA  N
Sbjct: 1534 DYERLLLGEPDSSLLWLKYMAFQLELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLN 1593

Query: 1609 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1668
            LEN +GN  ++++ +VF+ A +Y D  +++  +  ++ ++ + + ADEL    +KK   S
Sbjct: 1594 LENTFGN--DDSLEEVFKSACEYNDAHEIYDRMASIFIQSGKTEKADELFQAALKKKVSS 1651

Query: 1669 CKVWLRRVQRLLKQQQEGVQA---VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRG 1723
               +       L    E  Q    ++ RAL SLP H H++  S+   LEF+  NG  +RG
Sbjct: 1652 TPDFFLNYANFLFDTMEAPQRGRDLLPRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERG 1711

Query: 1724 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS--------------- 1768
            R++FEG+LS +PKR DLW++ LD EI++GD + +R LFER + +                
Sbjct: 1712 RTVFEGLLSSFPKRIDLWNVLLDLEIKVGDEEQVRRLFERVLGIGHGVVAADGSKEGPKK 1771

Query: 1769 -LPPKKMKFLFKKYLEYEKSV---GEEERIEYVKQKAMEYVES 1807
             L  K+ KFLFKK+L +E+ +   G+ + ++ VK +A +YV S
Sbjct: 1772 KLKEKQAKFLFKKWLAFEEKIASDGDLKMVDEVKARAADYVRS 1814



 Score =  203 bits (516), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 298/1280 (23%), Positives = 537/1280 (41%), Gaps = 131/1280 (10%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA--NEDNL---- 57
            + I+ G K+ G V+ +   D+ + LP  L G      A+   L  ++EA    DN     
Sbjct: 162  KRIAVGSKILGQVSSIGIHDISLALPNNLTGFVPLT-AISKTLTQKVEALLGNDNSEDED 220

Query: 58   -------LPTIFHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQE 107
                   L     VGQ +   V      D+DKK   K++I LS+       GL+   +  
Sbjct: 221  DEDDDFELKDFVKVGQYLRASVTSTTRDDEDKKVKNKKRIELSIEPHAANSGLTKADMVV 280

Query: 108  GMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSI 162
               + A V S+EDHG I+  GL      GF+    L   +G+D   VK G +   +V   
Sbjct: 281  NATVQASVASVEDHGLIMDLGLDDSETKGFVSSRELP--AGVDISTVKEGSVFLCIVTGQ 338

Query: 163  DRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
            + +  VV LS+D  + +            +I+  +PG      +  +   G++   +   
Sbjct: 339  NASGTVVKLSADLASAASVKKAHFLNTAPTINAFLPGTAAEVLITEVTPRGLVGKIMGML 398

Query: 221  TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAV--GLTLNPYLLH------ 272
               VDI H   +    +    Y+   K+  R++   P+S  +  G ++   +L       
Sbjct: 399  NAVVDIVHSGASDGKKDLTTKYHVGAKIKGRLITTYPSSDPIKLGFSILDSVLKFSPTAT 458

Query: 273  ------NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 326
                  N AP     + DI  + KV  VD  LGL + + ST      +V +S +A+E V 
Sbjct: 459  LTSGDDNDAP----SISDIIPEVKVTYVDSSLGLYVQLGSTKYQ--GFVHLSRLADERVD 512

Query: 327  KL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV-- 381
             +   E  YK GS    RI+GF  ++ L    L+    E       DV  G  VKGK+  
Sbjct: 513  SIYSSEGPYKVGSTHEGRIIGFSAMDNLFLVSLEPKIIEQPFLRLEDVTVGSTVKGKIEK 572

Query: 382  --IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 436
              I  +   G IV     +  L P  HM++ ++  P KKF+ G ++  RVL V  +  ++
Sbjct: 573  LHIGPEGIDGLIVSLTDKISGLVPGMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKHQL 632

Query: 437  TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 496
             +T KK+L+ S+ A    Y   +    + G + KI+ +G  V+FY  V+GF P SE+   
Sbjct: 633  RLTMKKSLLNSESAPWKDYENISAGNRSPGTLIKIQNNGAVVQFYGPVRGFLPVSEMSEA 692

Query: 497  PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGV 551
               +PS  + VGQVV    +S  P + ++ +S    P  V+ D     + ++ G +VSG 
Sbjct: 693  YISDPSQHFTVGQVVNVHALSVDPENGKLVVS-CKDPATVTADYQTAFEKIRPGLVVSGT 751

Query: 552  VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNES 609
            V   + + +++ +   G     + ++H++D    + A+ +   I+ G + D LLV   + 
Sbjct: 752  VFEKSSDDLLIKLQDSGLV-ARLNSDHISDGSASKRASALNR-IRVGQKMDGLLVYKVKK 809

Query: 610  SNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 665
            ++ L+  + + +L  +A +  LP+    I     V G + NII  G FV FL  LTG  P
Sbjct: 810  THRLIQVTNRVTLKEAAAEGRLPAKFEDIKHGLKVTGLIRNIIPEGIFVEFLDNLTGLIP 869

Query: 666  RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 725
            +    D   +     Y   Q + S +  V  ++ R  LSLK    S   +   +     E
Sbjct: 870  KRLVDDDHISRPDFGYSRSQVLSSTVCAVQEDSERFLLSLKPVGKSKETS---EAGSAPE 926

Query: 726  EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS----------DV 775
            +K      +     ELK +E   +G V + K+    D  + V   E+           D 
Sbjct: 927  KKTTARPLTNPVDEELKSMEDITLGKVTKAKITSVKDTQLNVIIAENVQGRIDVSEIFDS 986

Query: 776  YGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKK 833
            +  I   +       S  ++   +L +  A+  + + +S ++  +  +  +      +  
Sbjct: 987  WEDIKDRKHPLQIFHSKQILPVRVLGIHDARNHKFLPISHRSGKVSVYELSAKPSCLEAP 1046

Query: 834  KRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFL 891
              +    + L V       V  + E+ L L++ P     +    +S D + +   QK F 
Sbjct: 1047 TFEPLHLERLKVGDIHIGYVNNIAEDCLWLNISPNVRGRLRITDISDDMSVRGNIQKHFP 1106

Query: 892  NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 951
             G ++   V  + +     RL L  K     +T +     K      G ++   +T++  
Sbjct: 1107 VGSAIKVAVAGVDTEKN--RLDLSAKIGDTAKTLTVANLSK------GMILLGRVTKVTD 1158

Query: 952  LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1011
             ++ ++      G + + ++ DD + V     +NF   + +   ++   + P+ K  F  
Sbjct: 1159 HQVLVQINDNVVGVVSLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKIYF-- 1212

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECDVS------IGQRVTGYVYKVDNEWALLTISRHLKAQ 1065
              S++PS +    + S L  E+ +++      +GQ V G++ +VDN    +T+  ++ A 
Sbjct: 1213 --SVRPSKI----LSSSLPVEDPEITSINQLRVGQIVRGFIRRVDNIGVFVTLGHNVSA- 1265

Query: 1066 LFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1125
             +I  S    S L+E++  F + + V G +  ++KE   +++ L+      + K      
Sbjct: 1266 -YIRVSDLSDSYLKEWKDEFQVDQLVQGRITLVDKESNKIQMTLKKSALDPNYKPPFTLK 1324

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
            D     +  G IV G++ K+      + +    +L G  H +E+    V D        Q
Sbjct: 1325 D-----LKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT------Q 1373

Query: 1186 FDPLSGYDEGQFVKCKVLEI 1205
                  Y++   VK K+L++
Sbjct: 1374 L-----YEKDDIVKAKILKV 1388



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 154/362 (42%), Gaps = 29/362 (8%)

Query: 14   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 73
            G V  + E  L + +   +RG  R  D  D   D  +  N    +   F VG  +   V 
Sbjct: 1064 GYVNNIAEDCLWLNISPNVRGRLRITDISD---DMSVRGN----IQKHFPVGSAIKVAVA 1116

Query: 74   QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 133
             +D +K      ++ LS ++    K L++  + +GM+L   V  + DH  ++     +  
Sbjct: 1117 GVDTEK-----NRLDLSAKIGDTAKTLTVANLSKGMILLGRVTKVTDHQVLVQIN-DNVV 1170

Query: 134  GFLPRNNLAEN----SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLK 187
            G +   ++A++    +  +      L+  V  +D   K +Y S  P  +  S    +D +
Sbjct: 1171 GVVSLIDMADDYTKVNPTNFHKNEALRVCVVDVDIPNKKIYFSVRPSKILSSSLPVEDPE 1230

Query: 188  GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 247
              SI+ L  G +V   ++ +   GV ++     +  + +  L +++    WK+++   + 
Sbjct: 1231 ITSINQLRVGQIVRGFIRRVDNIGVFVTLGHNVSAYIRVSDLSDSY-LKEWKDEFQVDQL 1289

Query: 248  VNARILFVDPTSRAVGLTLNPYLLH-NRAPP---SHVKVGDIYDQSKVVRVDRGLGLLLD 303
            V  RI  VD  S  + +TL    L  N  PP     +KVG I    KV +V+   G  + 
Sbjct: 1290 VQGRITLVDKESNKIQMTLKKSALDPNYKPPFTLKDLKVGQIV-TGKVRKVEE-YGAFIA 1347

Query: 304  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI-LKASAFE 362
            I  +  +       S++AE+ V    + Y++   V+ +IL    LE     + LKAS F 
Sbjct: 1348 IDGS-ANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKILKV-DLEKCQIALGLKASYFN 1405

Query: 363  GL 364
             L
Sbjct: 1406 DL 1407


>gi|254570329|ref|XP_002492274.1| RNA binding protein with preference for single stranded tracts of U's
            involved in synthesis of both [Komagataella pastoris
            GS115]
 gi|238032072|emb|CAY69994.1| RNA binding protein with preference for single stranded tracts of U's
            involved in synthesis of both [Komagataella pastoris
            GS115]
 gi|328353721|emb|CCA40119.1| Polyribonucleotide nucleotidyltransferase [Komagataella pastoris CBS
            7435]
          Length = 1694

 Score =  392 bits (1006), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 397/1500 (26%), Positives = 706/1500 (47%), Gaps = 197/1500 (13%)

Query: 371  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
            V PG++V   ++ +   G   +  G +    PL H+  F + +  + +K+G+ +  RV+G
Sbjct: 324  VLPGVMVNAHILDITEEGIFCRVLGLLPGRIPLAHLKLFNVPEIRETYKIGSTIKSRVVG 383

Query: 431  VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW------ITKIEKHGCFVRFYNGV 484
            V     + +   + + S L + S+Y E+       G+      I   + +  ++      
Sbjct: 384  VLEYEGSKSLTLSTIPSILELDSTYDESPLESFPFGFTFESVKIVGKDSNNVYLELNEDT 443

Query: 485  QGFAPRSELGLDPGCEPSSMYHVGQVV-KCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 541
             G    S+L  +   +  S Y VG    K R++   P  +   L+  M P ++    L  
Sbjct: 444  YGQVHLSKLNKEVSID--SFYKVGSTHHKARVIGYSPVDKVFVLT--MDPRQLEAKFLNI 499

Query: 542  --VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 599
              + +G +V+GVV  V  + + + +  +   +  +P  H++D +     MK   K G + 
Sbjct: 500  QDIPIGEIVTGVVTKVHSHGLNIKIFDQ--FEAQVPYGHMSDVMLTYPEMK--FKIGTKV 555

Query: 600  DQLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
             +  VL     NL ++ K SL+ S + +L      + PN      V     TG  + F  
Sbjct: 556  -KGRVLKFYRGNLCVTLKKSLLRSERDELIFTYEDVVPNKRTFATVEKFFPTGVLMSFFN 614

Query: 659  RLTGFAPRSKAVDG--QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
             ++GF P+++  +    R +     +   SVR + +D  +   R+      SC  S D S
Sbjct: 615  NISGFLPKTEISEAYVNRPEDHLKLFQTISVRIDSIDPATNKFRV------SCLLSKDLS 668

Query: 717  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS-VIEGKVHESNDFGVVVSFEEHSDV 775
              QE                     K +  FI GS ++E  + E     ++V  ++ S+V
Sbjct: 669  EEQE---------------------KKISTFIPGSSILEVYIVEKMKDAMIVEVKD-SNV 706

Query: 776  YGFITHHQLA-GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR--------FREANS 826
             G I   QL+ G   ++ ++++ A+         V  SL+ +F+ R        F   +S
Sbjct: 707  RGVIQEGQLSDGDQNQNKTLLRTAV---------VGSSLEALFLHRDPKSRTINFTAKDS 757

Query: 827  NRQAQKKKRKREASKDL-GVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYA---SVSDYN 881
              +A K  +   + ++L  V + V   V  +    L +   E+   + G+A    ++D  
Sbjct: 758  LIRASKSGQLPASFEELPAVGEIVYGYVHTITNAGLFI---EFADGLSGFARTKDITDEP 814

Query: 882  TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLL--LLKAISETETSSSKRAKKKSSYDVG 939
            + K P   F N QSV A ++ L       RL L  +   I        K     + +  G
Sbjct: 815  SDKLPSLYFKN-QSVRARILKLDDEFRKFRLTLKDIDHQIVAATNPVDKSITNLNEFVPG 873

Query: 940  SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARII 997
             + +A+I  + P +L ++      GRI +++V D    +   +   S+FK G  +  ++I
Sbjct: 874  KITKAKIKSVTPTQLTVELAENQLGRIDVSQVFDSLLEIKDTKKPLSSFKEGAELKVKVI 933

Query: 998  AKSNKPDMKKS--------FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1049
               NK     S         L ELSIK S L   E G   +     ++ G +  G+V + 
Sbjct: 934  GYQNKDSSFTSVAFRDWGDILVELSIKKSEL--EEEGKVNVLSLTQITPGTKWLGFVTRY 991

Query: 1050 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1109
               +  +++S   + +L ++D +   S ++E ++ + +G A+      I           
Sbjct: 992  ARGFWWVSVSPKFRTKLSLMDLSKSGS-VEELEKAYPLGSAIEVTAKQI----------- 1039

Query: 1110 RPFQDGISDKTVDI-SNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1165
                  I +K V++ S +N    I++   GD +  RI  +      + V++   +  +  
Sbjct: 1040 ------IGNKAVEVFSKENRIETINDVKVGDKLPCRIISLSHDY--VTVELSDKVKAKSF 1091

Query: 1166 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1225
             TE         L  Y E      S  D        VL +  T R  F   +SLRS    
Sbjct: 1092 ITE--------ALDDYSESLESTFSTND---ICTATVLSVDDTTRQIF---VSLRSE--- 1134

Query: 1226 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1285
                N+ D         K +E  ED+    IV+G++  +++ G ++ L R + A V +++
Sbjct: 1135 ----NAKD---------KLIESFEDVKRGDIVRGFITRISNFGVYVSLGRTVFALVRVTD 1181

Query: 1286 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1345
            +SD ++   +K   + + V G+++      +R+ +TLK S     + + ++   +L VGD
Sbjct: 1182 ISDLFLTDWKKHVKLNQFVTGKIVDAGE-ERRILMTLKESQVGQGTGA-LHQFDDLKVGD 1239

Query: 1346 IVIGQIKRVESYGLFITIENTNLV-GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1404
            +  G IK++  +G+FIT++  + V GLCH S++S+  ++N E+++  G++VKVKIL +++
Sbjct: 1240 VYEGTIKKIMDFGVFITLDGVHSVDGLCHRSQISDSKIENFESLFNQGDRVKVKILDINR 1299

Query: 1405 EKRRISLGMKSSYFKNDADNLQMSSEEESD----EAIEEVGSYNRSSLLEN-SSVAVQDM 1459
             K+++SLGMK+SYF N  D      EEE+D    E  + V S +   ++EN      QD 
Sbjct: 1300 NKKQLSLGMKASYFANRDD------EEEADQLRAETDDSVDSDSDDQMMENIFETRQQDS 1353

Query: 1460 DMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD-MDNGISQNQGHTDEAKTIDE----- 1513
            D E +                    V++D E P  + +G+S N G    A  +D+     
Sbjct: 1354 DDEPD--------------------VDIDTESPKKIASGLSTN-GFDWTASILDQAEDDE 1392

Query: 1514 ----KNNRHAKKKEKEEREQEIRAAEER--LLEKDAPRTPDEFERLVRSSPNSSFVWIKY 1567
                      KKK+K+ R+ +   AE++   L    P++  +FERL+  +P+SS +W+ Y
Sbjct: 1393 SSSSDEEDFTKKKDKKNRKTKASIAEDKSATLNTRTPQSVSDFERLLIGNPDSSILWMNY 1452

Query: 1568 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1627
            M+F L ++++EKAR IAERAL+ IN REE EK+NIW+A  NLEN +G   ++ + +VF+R
Sbjct: 1453 MSFQLQLSEIEKAREIAERALKIINYREEQEKMNIWIALLNLENTFGT--DDTLEEVFKR 1510

Query: 1628 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1686
            A QY D   +H  L+G++  +E+ +  +E+   M KKF  +   W+     LL++   + 
Sbjct: 1511 ACQYMDSYVMHQKLVGIFALSEKWEKCEEIYTVMTKKFGRNVTTWVSYGAFLLERGNPDE 1570

Query: 1687 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1746
             + V+ RAL  LP+  HI+ + + A LEF +G A++GRS+FEG+L++ PKR DLW++Y+D
Sbjct: 1571 ARQVLGRALKVLPKADHIEVVRKFAQLEFAHGDAEQGRSLFEGLLADVPKRIDLWNVYID 1630

Query: 1747 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            QEI++ +   +  LFER I+  L  K+ +F F K+LE+E+   + +  +YVK +A +YV+
Sbjct: 1631 QEIKINEKKKVEDLFERVITKKLTRKQARFFFGKWLEFEEKQKDVKAADYVKAQASDYVQ 1690



 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 193/752 (25%), Positives = 346/752 (46%), Gaps = 64/752 (8%)

Query: 1   MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPILDNEI 50
           M  +N+  G  + G V  + +  + + LPG +RG          + +  +AL+   D+E 
Sbjct: 114 MTLKNLIPGSVVLGQVISIQKLGMQLGLPGNIRGYVPITSVSKQITQQLEALEQDSDDED 173

Query: 51  EANEDNL-------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 103
            ++   L       L  IF +GQ +  +VL+      E  K KI LS+    +   L  +
Sbjct: 174 ASSSPQLSEKVFPELSKIFQLGQWLRAVVLEESSVPSE-HKHKIQLSVEPEKVNAHLEDD 232

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDV----KPGL-LLQGV 158
            +  G VL   V S++DHG I+  G     GF+   +  +NSGID+    KPG  LL  +
Sbjct: 233 DLVPGGVLQVAVNSVQDHGCIVDTG-KKIPGFIFSKSF-KNSGIDMETDLKPGFVLLATI 290

Query: 159 VRSIDRTRKVVYLSS--DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 216
            +S ++    + L S  + D  S   T      S+D ++PG+MV+  +  I E G+    
Sbjct: 291 SKSNNKNTITLTLPSMNNKDNGSTLST----ATSVDAVLPGVMVNAHILDITEEGIFCRV 346

Query: 217 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--PYLL--- 271
           L    G + + HL+  F     +  Y     + +R++ V     +  LTL+  P +L   
Sbjct: 347 LGLLPGRIPLAHLK-LFNVPEIRETYKIGSTIKSRVVGVLEYEGSKSLTLSTIPSILELD 405

Query: 272 --HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 329
             ++ +P      G  ++  K+V  D    + L++      T   V +S + +E    ++
Sbjct: 406 STYDESPLESFPFGFTFESVKIVGKDSN-NVYLELNE---DTYGQVHLSKLNKE--VSID 459

Query: 330 KKYKEGSCV-RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 388
             YK GS   + R++G+  ++ +    +     E       D+  G +V G V  V S G
Sbjct: 460 SFYKVGSTHHKARVIGYSPVDKVFVLTMDPRQLEAKFLNIQDIPIGEIVTGVVTKVHSHG 519

Query: 389 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKS- 447
             ++     +A  P  HMS+  +  P  KFK+G ++  RVL      + VT KK+L++S 
Sbjct: 520 LNIKIFDQFEAQVPYGHMSDVMLTYPEMKFKIGTKVKGRVLKFYRGNLCVTLKKSLLRSE 579

Query: 448 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 507
           +  ++ +Y +      T   + K    G  + F+N + GF P++E+       P     +
Sbjct: 580 RDELIFTYEDVVPNKRTFATVEKFFPTGVLMSFFNNISGFLPKTEISEAYVNRPEDHLKL 639

Query: 508 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVV 561
            Q +  RI S  PA+ +  +S ++    +SE+   K+ + + G  +++V       +A++
Sbjct: 640 FQTISVRIDSIDPATNKFRVSCLLSKD-LSEEQEKKISTFIPGSSILEVYIVEKMKDAMI 698

Query: 562 VYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKY 618
           V V      +G I    L+  D  ++ T++++ +  G   + L +  D +S  +  +AK 
Sbjct: 699 VEV-KDSNVRGVIQEGQLSDGDQNQNKTLLRTAV-VGSSLEALFLHRDPKSRTINFTAKD 756

Query: 619 SLINSAQ--QLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 675
           SLI +++  QLP+    +     +V+GYV  I   G F+ F   L+GFA R+K +  + +
Sbjct: 757 SLIRASKSGQLPASFEELPAVGEIVYGYVHTITNAGLFIEFADGLSGFA-RTKDITDEPS 815

Query: 676 D-LSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           D L   Y+  QSVR+ IL ++ E  +  L+LK
Sbjct: 816 DKLPSLYFKNQSVRARILKLDDEFRKFRLTLK 847



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 359  SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 418
            +A + L+ +  DVK G +V+G +  + +FG  V     V AL  +  +S+  +    K  
Sbjct: 1135 NAKDKLIESFEDVKRGDIVRGFITRISNFGVYVSLGRTVFALVRVTDISDLFLTDWKKHV 1194

Query: 419  KVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 477
            K+   +  +++   + +RI +T K++ V      L  + +     +  G I KI   G F
Sbjct: 1195 KLNQFVTGKIVDAGEERRILMTLKESQVGQGTGALHQFDDLKVGDVYEGTIKKIMDFGVF 1254

Query: 478  VRF--YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 516
            +     + V G   RS++         S+++ G  VK +I+
Sbjct: 1255 ITLDGVHSVDGLCHRSQISDSKIENFESLFNQGDRVKVKIL 1295


>gi|348579013|ref|XP_003475276.1| PREDICTED: protein RRP5 homolog [Cavia porcellus]
          Length = 1841

 Score =  392 bits (1006), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 376/1402 (26%), Positives = 650/1402 (46%), Gaps = 157/1402 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 55   KSLCKGMRILGCVKEVNELELVIGLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLKDLL 114

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F +G LV C+V  +     E GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 115  RLPELFSLGMLVRCVVSSVSIT--EQGKKSVKLSLNPRNVNRVLSAEALKPGMLLTGTVS 172

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP+    E     N G  +K G  L  ++  +     VV L
Sbjct: 173  SLEDHGYLVDIGVEGTRAFLPQQKAQEYIRQKNKGAKLKVGQYLNCIIEEMKGNGGVVGL 232

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S +   +S  +    +  +++ L+PG+++  +VQ + + G+ L+F T+FTG VD  HL  
Sbjct: 233  SIEQSEISTAIATQEQNWNLNNLLPGLVLQAQVQKVTQFGLTLNFFTFFTGLVDFMHLD- 291

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQ 288
                      Y  ++ V A +L V P +RAV L+L P  L    P + +    +G +   
Sbjct: 292  ----PKKVGMYFSNQTVRACVLCVHPRTRAVRLSLRPIFLQPGRPLTRLSCQHLGAVLQD 347

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V       G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 348  VPVQGFFNKAGATFRLKDGAL---AYARLSHLSDSKNGFRPEAFKPGNTHKCRIIDYSQM 404

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D+K G V+KG V+ +  FG +V+    ++ L P  H+++
Sbjct: 405  DELALLSLRTSVIEAQYLKYHDIKTGAVIKGTVMTIKPFGMLVKVGEQMRGLVPAMHLAD 464

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ VG E+  RVL    ++K++ +T KKTLV SKL +++ Y +A   L THG
Sbjct: 465  IPMKNPEKKYHVGDEVKCRVLLCDPEAKKLILTLKKTLVTSKLPVITCYEDAKPGLQTHG 524

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
             I +++ +GC V+FYN VQG  P+ EL      +P  +++VGQVVK  +++  P+  R+ 
Sbjct: 525  AILRVKDYGCIVKFYNDVQGLVPKHELSDQHIPDPEKVFYVGQVVKVAVLNCEPSRERML 584

Query: 527  LSFMM--KPTRVS--------EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +   P R +            + +G LV   +   T + + V V+        +PT
Sbjct: 585  LSFKLLSDPERKNGSVERRQKSKKAISVGQLVDVKILEKTKDGLHVAVLPHNIP-AFLPT 643

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q+P   S I
Sbjct: 644  PHLSDHVTNGPLLYHWLQAGDTLHRVLCLSQSEKQVLLCRKPALVSAVEDGQVPKSFSEI 703

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
             P  ++ G+V +I + G FV+F   L+G AP++   D    + S  +  GQ+V   +  V
Sbjct: 704  QPGMLLVGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTNPSDHFVEGQTVVVKVTKV 763

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE----LKWVEGFIIG 750
            + E  R+ +SL+ S C    +S      L +    +       GS+    ++ +     G
Sbjct: 764  DEEKQRMLVSLRLSDCRLGSSSSTSLLLLSQCLEELHGVRSLMGSQDSVLIQTLAKMTPG 823

Query: 751  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
             V++  V E   D  VV+S     D+    + +  AG  VE+G   +A IL V   E  V
Sbjct: 824  MVLDLVVQEVLEDGSVVLSGGPVPDLVLRASRYHRAGQEVEAGQKRKAVILHVDMLELEV 883

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    +        NR+A+K K+ R+            A V+ ++E++ + SL E  
Sbjct: 884  HVSLLKELV--------NRKARKLKKGRK----------YQATVQHLEESFALASLVETG 925

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST----------AGRLLLLLKA 918
            H + ++  S  N T +F  ++   GQ V   +       T          A R+L   + 
Sbjct: 926  HLVAFSLASHLNDTFRFDSEKLQVGQGVCLVLKTTEPGVTGLLLAVVGPAAQRVLRQTRK 985

Query: 919  ISET-------ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 971
             SET       + +     +++ +  +G  V   +  +KP  + +    G  G IH + +
Sbjct: 986  DSETVDDDEEGDPALVTGLRRQHTLALGDTVTGTVKSVKPTHVVVTLEGGLVGCIHASHI 1045

Query: 972  NDDKSNVVENLF--SNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKPSML 1020
             DD   VVE     +  K+GQ+VTAR+I     K++K  P     F+    ELSI+PS L
Sbjct: 1046 LDD---VVEGSMPTATLKVGQSVTARVIGGRDVKTSKFLPISHPRFIRTIPELSIRPSEL 1102

Query: 1021 ----TVSEIGSKLLFEECD-VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAY 1073
                T  +  S    E+ +    GQ VT ++  Y V  +W  + I+  ++ ++ +L ++ 
Sbjct: 1103 EQGHTALDTYSASPGEKIEHYQAGQTVTCFLKKYNVVKKWLEVDIAPDIRGRIPLLLASL 1162

Query: 1074 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1133
                L+   ++F IG+A+   V+  +  +  L L L             I    ++    
Sbjct: 1163 SFKVLKHPDKKFQIGQALRATVVGPDSSRAFLCLSL-------------IGPHKLE---- 1205

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPH--LYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            +G++  GR           VV++ PH  L     F     + V      Y E    PL  
Sbjct: 1206 KGEVAMGR-----------VVKVTPHKGLTVAFPFGRTGTVSVFHMSDSYSE---TPLED 1251

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            +   + V+C VL  +  +     + LSLR     +S TN  +  + V+ P   ++ ++D+
Sbjct: 1252 FMPQKVVRCYVLSTADHM-----LTLSLR-----LSRTN-PETKSKVEDP--EIDSMQDV 1298

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVA 1305
                +++GYV+++   G  + L   +   V L+  S     SP K+       P G+L+ 
Sbjct: 1299 KAGQLLRGYVQSIEPSGVLLGLGPSV---VGLAQFSHVSQSSPPKKDLYRKYLPEGRLLT 1355

Query: 1306 GRVLSVEPLSKRVEVTLKTSDS 1327
             +VL +      VE++   +D+
Sbjct: 1356 AKVLRLNHNKNLVELSFLPTDT 1377



 Score =  288 bits (737), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/328 (45%), Positives = 222/328 (67%), Gaps = 6/328 (1%)

Query: 1484 EVNLDDEQPDMDNGISQNQGHTDEA--KTIDEKNNRHAKKKEKEEREQEIRAAEERLLE- 1540
            +V LD   P +      +    DE   + + +K ++  ++ EK++ E+E+   EE L++ 
Sbjct: 1509 DVGLDSLTPALPPRGESSDSEEDEKPHQAMHKKKSKKERELEKQQSEKELSRIEEALMDP 1568

Query: 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1600
            +  P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKL
Sbjct: 1569 RRQPGSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL 1628

Query: 1601 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1660
            N+WVA  NLEN YG+P  E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +
Sbjct: 1629 NVWVALLNLENMYGSP--ESLSKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNR 1686

Query: 1661 MIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1719
            M+K+F+    VW++    LL++ Q G  + V+QRAL  LP  +H+  I++ A LEF+ G 
Sbjct: 1687 MLKRFRQEKAVWVKYGAFLLRRSQAGACRRVLQRALECLPTKEHMDVITKFAQLEFQLGD 1746

Query: 1720 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1779
            A+R +++FE +LS YPKRTD+WS+++D  I+      IR LFER I LSL PKKMKF FK
Sbjct: 1747 AERAKAIFENMLSTYPKRTDVWSVFIDLTIKHSSQKEIRDLFERVIHLSLAPKKMKFFFK 1806

Query: 1780 KYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            +YL+YEK  G E+ +  VK KA+EYVE+
Sbjct: 1807 RYLDYEKQHGTEKDVLAVKAKALEYVEA 1834



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 142/328 (43%), Gaps = 43/328 (13%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1148
            + V   VL ++   + +RL LRP           +S  ++   + +  + G       + 
Sbjct: 302  QTVRACVLCVHPRTRAVRLSLRPIFLQPGRPLTRLSCQHLGAVLQDVPVQG-----FFNK 356

Query: 1149 VGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
             G    ++ G   Y R+ H ++ KN        G+    F P      G   KC++++ S
Sbjct: 357  AGATFRLKDGALAYARLSHLSDSKN--------GFRPEAFKP------GNTHKCRIIDYS 402

Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1266
            +         LSLR+S+                   ++L K  D+    +++G V  +  
Sbjct: 403  QMDELAL---LSLRTSV----------------IEAQYL-KYHDIKTGAVIKGTVMTIKP 442

Query: 1267 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
             G  + +  ++   V   +L+D  +++PEK++ +G  V  RVL  +P +K++ +TLK + 
Sbjct: 443  FGMLVKVGEQMRGLVPAMHLADIPMKNPEKKYHVGDEVKCRVLLCDPEAKKLILTLKKTL 502

Query: 1327 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
              T+    I    +   G    G I RV+ YG  +   N ++ GL    ELS+ H+ + E
Sbjct: 503  V-TSKLPVITCYEDAKPGLQTHGAILRVKDYGCIVKFYN-DVQGLVPKHELSDQHIPDPE 560

Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             ++  G+ VKV +L  +  + R+ L  K
Sbjct: 561  KVFYVGQVVKVAVLNCEPSRERMLLSFK 588



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 141/698 (20%), Positives = 260/698 (37%), Gaps = 104/698 (14%)

Query: 641  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETG 699
            HGY+ +I   G           F P+ KA +  R  +      VGQ +   I ++    G
Sbjct: 177  HGYLVDIGVEGT--------RAFLPQQKAQEYIRQKNKGAKLKVGQYLNCIIEEMKGNGG 228

Query: 700  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW-VEGFIIGSVIEGKVH 758
             + LS++QS  S+  A+                       E  W +   + G V++ +V 
Sbjct: 229  VVGLSIEQSEISTAIAT----------------------QEQNWNLNNLLPGLVLQAQVQ 266

Query: 759  ESNDFGVVVSFEEHSDVYGFITHHQLAGATVE---SGSVIQAAILDVAKAERLVDLSLKT 815
            +   FG+ ++F   +   G +    L    V    S   ++A +L V    R V LSL+ 
Sbjct: 267  KVTQFGLTLNF--FTFFTGLVDFMHLDPKKVGMYFSNQTVRACVLCVHPRTRAVRLSLRP 324

Query: 816  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 875
            +F+   R              R + + LG       +     +      L   + ++ YA
Sbjct: 325  IFLQPGRPLT-----------RLSCQHLGAVLQDVPVQGFFNKAGATFRL--KDGALAYA 371

Query: 876  SVSDYNTQK--FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK 933
             +S  +  K  F  + F  G +    ++     S    L LL    S  E    K    K
Sbjct: 372  RLSHLSDSKNGFRPEAFKPGNTHKCRII---DYSQMDELALLSLRTSVIEAQYLKYHDIK 428

Query: 934  SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 993
            +    G++++  +  IKP  + +K G    G +    + D     ++N    + +G  V 
Sbjct: 429  T----GAVIKGTVMTIKPFGMLVKVGEQMRGLVPAMHLADIP---MKNPEKKYHVGDEVK 481

Query: 994  ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC--DVSIGQRVTGYVYKVDN 1051
             R++     P+ KK  L   ++K +++T     SKL    C  D   G +  G + +V +
Sbjct: 482  CRVLL--CDPEAKKLIL---TLKKTLVT-----SKLPVITCYEDAKPGLQTHGAILRVKD 531

Query: 1052 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1111
               ++     +  Q  +         + + ++ F++G+ V   VL+    ++ + L  + 
Sbjct: 532  YGCIVKFYNDV--QGLVPKHELSDQHIPDPEKVFYVGQVVKVAVLNCEPSRERMLLSFKL 589

Query: 1112 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELK 1170
              D              +  I  G +V  +I  +     GL V + PH +   +    L 
Sbjct: 590  LSDPERKNGSVERRQKSKKAISVGQLVDVKI--LEKTKDGLHVAVLPHNIPAFLPTPHLS 647

Query: 1171 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1230
            +   + PL       +  L   D                  T H  L L  S   +    
Sbjct: 648  DHVTNGPLL------YHWLQAGD------------------TLHRVLCLSQSEKQVLLCR 683

Query: 1231 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1290
               L + V+  G+  +   ++ P M++ G+VK++   G F+     L      + +SD +
Sbjct: 684  KPALVSAVED-GQVPKSFSEIQPGMLLVGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKF 742

Query: 1291 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
            V +P   F  G+ V  +V  V+   +R+ V+L+ SD R
Sbjct: 743  VTNPSDHFVEGQTVVVKVTKVDEEKQRMLVSLRLSDCR 780



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 23/228 (10%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS-KGCFI 1271
            F +  +LR+++ G  S+ +  L   +  P K LEK E      +  G V  VT  KG  +
Sbjct: 1174 FQIGQALRATVVGPDSSRAF-LCLSLIGPHK-LEKGE------VAMGRVVKVTPHKGLTV 1225

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                     V + ++SD Y E+P ++F   K+V   VLS       + + L  ++  T S
Sbjct: 1226 AFPFGRTGTVSVFHMSDSYSETPLEDFMPQKVVRCYVLSTADHMLTLSLRLSRTNPETKS 1285

Query: 1332 Q---SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDHVDNI 1385
            +    EI+++ ++  G ++ G ++ +E  G+ + +   ++VGL    HVS+ S    D  
Sbjct: 1286 KVEDPEIDSMQDVKAGQLLRGYVQSIEPSGVLLGL-GPSVVGLAQFSHVSQSSPPKKDLY 1344

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA---DNLQMSSE 1430
                  G  +  K+L+++  K  + L    S+   D    D L +S E
Sbjct: 1345 RKYLPEGRLLTAKVLRLNHNKNLVEL----SFLPTDTGRPDVLSVSPE 1388


>gi|336273586|ref|XP_003351547.1| hypothetical protein SMAC_00089 [Sordaria macrospora k-hell]
 gi|380095827|emb|CCC05873.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1776

 Score =  391 bits (1005), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 376/1386 (27%), Positives = 672/1386 (48%), Gaps = 161/1386 (11%)

Query: 484  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTRVSED 539
            V+   P   L +D G E    Y VG V   R++  ++      I+L  S + +P    ED
Sbjct: 469  VKQVEPEIGLYVDVGVEDVGPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFLRIED 528

Query: 540  DLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIK 594
              + +G++VSGVV+ +  NA     ++  IA G S G +P  H AD HL++    +   +
Sbjct: 529  --IPVGAVVSGVVEKMVLNAAGVGGLIVKIADGIS-GLVPEMHFADVHLQNP---EKKFR 582

Query: 595  PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETG 651
             G +   ++L  D  S  + L+ K +L+NS   LP+  ++  I       G + N+++ G
Sbjct: 583  EGLKVKARVLSTDAASRQIRLTLKKTLVNS--DLPAIQTYDEITVGQQALGTIINVLQHG 640

Query: 652  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
              V+F GRL GF P S+  +    D  + + VGQ+V   ++  + +  ++ +S K     
Sbjct: 641  AIVQFYGRLRGFLPVSEMSEAYIHDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKDPAA- 699

Query: 712  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 771
                      F LE+++A+              +   IG V+  KV +  D  V V   +
Sbjct: 700  ----------FGLEKQLAL--------------KKLQIGDVVSAKVTQKTDDDVFVELAD 735

Query: 772  HSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLKTVFIDRF 821
             S        H    +  ++ S ++            IL+  +A R + LS K + +   
Sbjct: 736  SSLKAILPVAHLTDKSVSKTQSALKKIHVNQTLSELVILEKNEARRSIILSQKPILVKAT 795

Query: 822  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDY 880
            +E          +   E +   G  + + A    V+    L   LP+        S+   
Sbjct: 796  KEGKFLTSLDGARVGEEVA---GYVRNITATAVFVQFGGKLTALLPK--------SMIPK 844

Query: 881  NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE----TETSSSKRA----KK 932
              Q  P       QS+   + ++  ++   RL++ +   +E     +T   K A    + 
Sbjct: 845  EDQDKPDFGMFKSQSITVKITSV--NNELNRLVVAVPGATEQVKRVDTKGEKLANPVDES 902

Query: 933  KSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFK 987
             +S D   +G L +A +  +K  ++ ++      GRI +++V D+   +   +     F+
Sbjct: 903  ITSLDDISIGKLTKARVVSVKDTQVNVQLADNIQGRIDVSQVYDNWEQIKDTKKPLKKFQ 962

Query: 988  IGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIG 1039
              Q V  R++    A++++  P   +S   + ELS KPS +        L F+  ++ +G
Sbjct: 963  PKQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEGASSEALSFD--NLKVG 1020

Query: 1040 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1099
                G+V  V      + +S  ++ ++  ++++ + S L    + F IG A+   V+S++
Sbjct: 1021 SSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSALRVRVVSVD 1080

Query: 1100 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1159
             E K L L  R    G  D   +++ D     I +  I+ G+++K+      ++V++   
Sbjct: 1081 AESKRLDLSAR--SPGSED---ELTWDK----IAQDVILVGKVTKVDER--QVIVKLSET 1129

Query: 1160 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1219
            L G VH  +L +         Y+E   +P + + + + V+  V+E+ ++ +    + LS 
Sbjct: 1130 LAGPVHKVDLAD--------DYEEA--NP-AKFAKNEIVRVAVVEVDKSNK---RIRLST 1175

Query: 1220 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1279
            R S           L++ +    K + +   L    IV+G+VKNV+ KG F+ L   + A
Sbjct: 1176 RPS---------RILNSSLPVKDKEIVQHTKLEVGEIVRGFVKNVSDKGLFVTLGGNVTA 1226

Query: 1280 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1339
             V + NLSD Y++  +++F + +LV GR++SV   + R+E++LK S         +  +S
Sbjct: 1227 FVQIKNLSDAYLKYWKEQFQVDQLVKGRIVSVA--NGRIEMSLKPS-VVDKDYVPLTTIS 1283

Query: 1340 NLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1398
            +L  G  + G++++VE +G FI I+ + NL GLCH SE+S+  V +   +Y  G+KVK K
Sbjct: 1284 DLKEGQTITGRVRKVEEFGAFIDIDGSDNLSGLCHRSEMSDKAVKDARKLYEEGDKVKAK 1343

Query: 1399 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQ- 1457
            +LKVD   +RI+LG+K SYF    +       +  +EA E+    +    + ++  AVQ 
Sbjct: 1344 VLKVDATAKRINLGLKPSYF---GEQGDEDEMDVDEEAAEDSEGDDSDEDMSDADGAVQI 1400

Query: 1458 ----DMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTD-EAKTID 1512
                +++ +SED       ++   + V  LE    D    +++G   +    D EA    
Sbjct: 1401 TGTDNIEEDSEDEDEGSDVEMADASDVKGLEAGGFDWSASLEDGEKADASAADLEA---- 1456

Query: 1513 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1572
                    KK+K  RE +I   +   L+ + P+T  ++ERL+   P+SS +WI YMAF +
Sbjct: 1457 ------LAKKKKARREPQITVDKTASLDVNGPQTASDYERLLLGQPDSSQLWIAYMAFQM 1510

Query: 1573 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1632
             ++D+  AR +AERA++TINI+EE EKLN+W+AY NLE  YGN  EE V +VF+RA  Y 
Sbjct: 1511 QVSDLAAARQVAERAIKTINIKEEIEKLNVWIAYLNLEVAYGN--EETVDEVFKRACTYN 1568

Query: 1633 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRRVQRL--LKQQQEGVQA 1689
            D ++V+  L  +Y ++ + K AD+L  K++K+F + S +VW+     L       +  +A
Sbjct: 1569 DKQEVYERLASIYIQSGKRKEADDLFEKIVKEFGYKSPEVWVNYAHFLHTTMHSPDRARA 1628

Query: 1690 VVQRA--LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYL 1745
            +++RA  +L    H +I  + + A LEF+  NG  ++GR++FE +L+ YPK+ DLW+  +
Sbjct: 1629 LLKRATQVLGKETHLYIALLPKFAALEFRSPNGDKEQGRTLFENLLATYPKKFDLWNQLI 1688

Query: 1746 DQEIRLGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
            D E    D D  +IR LF+R   +  L P++ K  F+++ ++E+  G+++  E V  KA 
Sbjct: 1689 DLETSAADADKGVIRDLFDRGSKVKGLKPRQAKAWFRRWAQWEEKNGDKKSREKVSAKAQ 1748

Query: 1803 EYVEST 1808
            E+  + 
Sbjct: 1749 EWARTA 1754



 Score =  176 bits (447), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 195/753 (25%), Positives = 326/753 (43%), Gaps = 85/753 (11%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN--------------E 54
           G  + G V  +N  D+ + LP  + G      A+   L   +EA+               
Sbjct: 155 GSLVLGSVCAINALDIAVALPNNIIGHVPIT-AISAPLTKRLEASAGDDDAEESDDENEN 213

Query: 55  DNLLPTIFHVGQLVSCIVLQLDDDKKE----IGKRKIWLSLRLSLLYKGLSLETVQEGMV 110
           D  L +IF +GQ V   V+   D+         KR I LSL+ SL   G++ + V     
Sbjct: 214 DVDLESIFQIGQYVRAYVVSTVDEASTHTPGKAKRHIELSLQPSLANTGMAEQDVVVNST 273

Query: 111 LTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRK 167
           + A + S+EDHGY++   +      GFL R  + ++   + ++PG +L  +V    +  K
Sbjct: 274 VMAAIASVEDHGYVMDIEIADSKLQGFLARKQVDKSIPQEALQPGAVLLCMVTKSAKG-K 332

Query: 168 VVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 227
           +V LS+  +T+           +ID  +PG      V  +  +G++   +     T D+ 
Sbjct: 333 IVQLSTLGETIGNVENVPAAATTIDTFLPGTAADVLVSEVSNHGIVGKIMGSLDVTADLV 392

Query: 228 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL---------TLNPYLLHNRAPP- 277
           H        + ++ Y    ++ AR++   PT++   L         +L P        P 
Sbjct: 393 HSGAGPDGVDLEDTYKVGSRLKARVICNFPTAKNPKLGISVLKHVTSLKPKTASKDEQPV 452

Query: 278 ---SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 334
                +    I ++  V +V+  +GL +D           V + DV           YK 
Sbjct: 453 VPLQALPHSTIVEKCTVKQVEPEIGLYVD-----------VGVEDVGP---------YKV 492

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV-----IAVDSFGA 389
           GS    R++G+   +G+    L+ S  E       D+  G VV G V      A    G 
Sbjct: 493 GSVHAGRVVGYNAFDGMYLISLEKSVLEQPFLRIEDIPVGAVVSGVVEKMVLNAAGVGGL 552

Query: 390 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKS 447
           IV+   G+  L P  H ++  +  P KKF+ G ++  RVL     S++I +T KKTLV S
Sbjct: 553 IVKIADGISGLVPEMHFADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLTLKKTLVNS 612

Query: 448 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 507
            L  + +Y E T      G I  + +HG  V+FY  ++GF P SE+      +P   + V
Sbjct: 613 DLPAIQTYDEITVGQQALGTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIHDPKEHFRV 672

Query: 508 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVY 563
           GQ V   ++S  P + ++ +S         E  L    +++G +VS  V   T + V V 
Sbjct: 673 GQTVSIYVISFDPDAAKLIVSCKDPAAFGLEKQLALKKLQIGDVVSAKVTQKTDDDVFVE 732

Query: 564 VIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLLSAKY 618
            +A    K  +P  HL D  +  +  +S +K         +L++L+ NE+  +++LS K 
Sbjct: 733 -LADSSLKAILPVAHLTD--KSVSKTQSALKKIHVNQTLSELVILEKNEARRSIILSQKP 789

Query: 619 SLINSAQQ---LPS-DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS--KAVDG 672
            L+ + ++   L S D + +     V GYV NI  T  FV+F G+LT   P+S     D 
Sbjct: 790 ILVKATKEGKFLTSLDGARV--GEEVAGYVRNITATAVFVQFGGKLTALLPKSMIPKEDQ 847

Query: 673 QRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
            + D     +  QS+   I  VN+E  R+ +++
Sbjct: 848 DKPDFG--MFKSQSITVKITSVNNELNRLVVAV 878



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 4/176 (2%)

Query: 365  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
            +  H+ ++ G +V+G V  V   G  V   G V A   + ++S+  +    ++F+V   +
Sbjct: 1192 IVQHTKLEVGEIVRGFVKNVSDKGLFVTLGGNVTAFVQIKNLSDAYLKYWKEQFQVDQLV 1251

Query: 425  VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YN 482
              R++ V + RI ++ K ++V      L++ ++  +     G + K+E+ G F+     +
Sbjct: 1252 KGRIVSVANGRIEMSLKPSVVDKDYVPLTTISDLKEGQTITGRVRKVEEFGAFIDIDGSD 1311

Query: 483  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 538
             + G   RSE+      +   +Y  G  VK +++     ++RINL   +KP+   E
Sbjct: 1312 NLSGLCHRSEMSDKAVKDARKLYEEGDKVKAKVLKVDATAKRINLG--LKPSYFGE 1365


>gi|363754491|ref|XP_003647461.1| hypothetical protein Ecym_6262 [Eremothecium cymbalariae DBVPG#7215]
 gi|356891098|gb|AET40644.1| hypothetical protein Ecym_6262 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1714

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 356/1200 (29%), Positives = 575/1200 (47%), Gaps = 150/1200 (12%)

Query: 651  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710
            GC V  LG L  F P S+  +           +GQ+V   +L+ N +  RI +S K    
Sbjct: 612  GCIVSLLGNLKAFLPNSEISEAFVKKAQDHLRLGQTVMIKVLECNEDRQRIIVSCK---V 668

Query: 711  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 768
            SST AS  QE     EK+ + +S          ++  I+    +  V ESND G+  V+ 
Sbjct: 669  SSTAASQQQEAI---EKMIVGRS---------IIDVTIVEKTKDSIVAESNDAGLRGVIF 716

Query: 769  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 828
                SD    I  ++     ++ G+ ++  + D     R+ +++ K   I   R+A  + 
Sbjct: 717  VGHLSD--SRIEQNRALLKKLKIGTGLRGLVTDKDTKTRVFNMTCKKSLI---RDAEEDL 771

Query: 829  QAQKKKRKREASKDLGVHQTVNAIVE-----IVKENYLVLSLPEYNHSIGYASVSDYNTQ 883
                 ++ +   K+  +H  V +I E          ++ L LP Y        +S     
Sbjct: 772  LPLNFEKIKNKDKNSPMHGYVKSISEKGIFVAFHGKFVGLVLPSYATESRDVGIS----- 826

Query: 884  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK---------- 933
                K+F   QSV  TV  L       R LL +K   E + S++K   K           
Sbjct: 827  ----KKFYINQSV--TVYLLRIDEENERFLLTMK---EPKLSTNKEEPKVVGALNPVDQN 877

Query: 934  ----SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN---F 986
                S Y +G L +A I  IK  +L +      HGRI ++E+ D+   + EN+ +    F
Sbjct: 878  IKYLSEYTIGRLTKARINSIKKTQLNVVLADNLHGRIDVSEIFDNFEEI-ENISTPLVPF 936

Query: 987  KIGQTVTARII----AKSNK--PDMKKS---FLWELSIKPSMLTVSEIGSKLLFEECDVS 1037
            K G  +  R+I    AK++K  P   ++    + ELS K S+L+        +    DV 
Sbjct: 937  KKGDIIDVRVIGFHDAKTHKFLPVSHRNGINTVLELSAKKSVLS----NEHRILSFKDVK 992

Query: 1038 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ-EFQRRFHIGKAVTGHVL 1096
            +G  + G+V     ++  LTIS+ LKA++   + + E    + E    F +G A+   V 
Sbjct: 993  VGDSLVGFVNNFSKDFVWLTISQSLKAKIPNFELSDEGDIFKSEIDHTFPLGSALKVKVT 1052

Query: 1097 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1156
            S++ E + + +  R         ++ +  D     +  G  +  R+ K+ S    L++ +
Sbjct: 1053 SLDSEHRTVNVSARS-------TSITVIKD-----VEIGSTLPARVVKVSSSY--LLLDL 1098

Query: 1157 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1216
            G  + G V F       V+D L  Y         G   G  V   V++      G   + 
Sbjct: 1099 GNKVTG-VAF-------VTDALDEYSLSLETAFEG-KVGSIVSATVVDCDV---GNNRIN 1146

Query: 1217 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1276
            LSLR            D+++  D           L    +V+G++K VT KG F+ LSR 
Sbjct: 1147 LSLRGG-----KPKDRDITSHTD-----------LKRGDVVRGFIKTVTEKGIFVYLSRS 1190

Query: 1277 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1336
            + A V +S L+D Y++  +K +   + +  +V++    S  + +T+K S+        + 
Sbjct: 1191 IQAFVPVSKLTDAYIKEWKKFYRPMQPITAKVVNCADNS-HILLTMKESEV-NGDLHILK 1248

Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
              +++ VGDI  G +K V  +G+F+ + NT N+ GL H SE+SE  V+++  ++  G+KV
Sbjct: 1249 GYNDIQVGDIFEGYVKNVTDFGVFVKLGNTLNVTGLAHKSEVSEAKVEDLHNLFGEGDKV 1308

Query: 1396 KVKILKVDKEKRRISLGMKSSYFKNDADNL----QM---SSEEESDEAIEEVGSYNRSSL 1448
            K  ILK +  K++ISLG+K+SYFKN+  ++    QM     E E+DE +E V   N S  
Sbjct: 1309 KAIILKTNPTKKQISLGLKASYFKNEVADVVEEEQMIPSDPESEADEVMEGVDYNNESEN 1368

Query: 1449 LENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEA 1508
                    + +   S DG SL  A  +  ASV      LD        G  +     +E 
Sbjct: 1369 ESEEQELSKKVISSSNDGLSLS-AAFDWTASV------LDQA------GEVEESSDEEED 1415

Query: 1509 KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYM 1568
             T  +      K K   ++  +I           AP +  ++ERL+  +PNSS +W+ YM
Sbjct: 1416 FTSKKSKRNKRKTKVSADKTIDINTR--------APESVADYERLIMGNPNSSVIWMNYM 1467

Query: 1569 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1628
            AF L +++V+KAR + ERAL+TIN REE EKLNIW+A  NLEN +G+  EE +  +F+RA
Sbjct: 1468 AFQLQLSEVDKARELGERALKTINFREEAEKLNIWIAILNLENTFGS--EETLEGMFRRA 1525

Query: 1629 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEG 1686
             QY +   +H+ L+ +Y  +E+   A+EL     KKF      +W+   + LL Q ++E 
Sbjct: 1526 CQYMESFTIHMKLISIYTMSEKFDKANELYSSTAKKFGSEKVSIWVSWSEFLLVQGRKEE 1585

Query: 1687 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1746
              A++ +AL  LP+  HI+ + + A LEF  G  ++GRS+FEG+L++ PKR DLW++Y+D
Sbjct: 1586 AHAILAKALNVLPKRNHIEIVRKVAQLEFSKGEPEQGRSLFEGLLADAPKRIDLWNVYID 1645

Query: 1747 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            QEI+L D   +  LFER I+  +  K+ KF F K+L++E+S  ++   EYVK KA EYV+
Sbjct: 1646 QEIKLLDKKKVENLFERVITKKISRKQAKFFFNKWLQFEESQDDQRTAEYVKAKAAEYVQ 1705



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 288/1260 (22%), Positives = 535/1260 (42%), Gaps = 149/1260 (11%)

Query: 6    ISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---DNEIEA------- 52
            ++ G  + G V  +++ D+ +     LRG   L   +D    IL   D+ +E+       
Sbjct: 114  LTPGTLVLGQVCSISKMDICVAFTDNLRGYVPLTNISDRFSSILEELDDAMESGSDSEDE 173

Query: 53   -----------NEDNL----LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSL 91
                       NE+N     LP +   F VGQ + C V +   LD   K+  K +I LS+
Sbjct: 174  DGEYDSSDERKNENNRPTAELPNLQNYFTVGQWLRCYVQKNTALDPQHKK--KHRIELSI 231

Query: 92   RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP 151
                + + L  E + +   +   VKSIEDHG IL  G+ + TGF+ + +   ++ + +  
Sbjct: 232  EPPKVNQ-LEDEDLSKNSTIQCSVKSIEDHGAILDLGIKNITGFISKKDFPGSNEL-LAG 289

Query: 152  GLLLQGVVRSIDRTRKVVYLSSDPDTVSK-CVTKDLKGISIDLLVPGMMVSTRVQSILEN 210
             + L  +V+   RT  V +     D  SK C    +   S+D ++PG  V    Q I  +
Sbjct: 290  SVFLANIVKRSGRTVTVNF-----DFASKKCKVSQIS--SVDAVIPGQTVDFLCQKITNH 342

Query: 211  GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 270
            G++        G + I  LQ  F T   KN Y     +  RI+    T        N  +
Sbjct: 343  GIVGKAFGLVDGFLGISQLQ-CFSTDIIKNKYPVGNNIKCRIIATLTTKNG-----NKTI 396

Query: 271  LHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLD--IPSTPVSTPAYVTISD--VAEEEV 325
            L +  P  HV  + D   + + ++    +G LLD  +  T      Y+ +SD  + +  +
Sbjct: 397  LVSTLP--HVLSLNDTLLEHEALQA-FSVGYLLDSCMVETRDQQYFYIKLSDDRLGQVHI 453

Query: 326  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG-MVVKGKVIAV 384
             K+      G+ ++ RI+G+  ++            E       D+  G ++ K ++ +V
Sbjct: 454  SKIGDVLPAGN-MKARIIGYNTIDAYYQLTTDPKMLEVDYLRSLDIPIGKILTKCEITSV 512

Query: 385  DSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKK 442
               G  +   GG  KA  P  H+S+  +V P +KFK+G+++  RVL V  K RI  T KK
Sbjct: 513  SDKGIELNLYGGQFKAFVPPLHISDVRLVYPERKFKIGSQVKARVLNVDHKGRIYATLKK 572

Query: 443  TLVK---SKLAILSSYA-----EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 494
            +LV    S + ++SS+      EA DR  T G +   +  GC V     ++ F P SE+ 
Sbjct: 573  SLVSYDDSSIQLISSFENVKNLEADDRK-TLGTVESFKPGGCIVSLLGNLKAFLPNSEIS 631

Query: 495  LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG--VV 552
                 +      +GQ V  +++      +RI +S  +  T  S+     +  ++ G  ++
Sbjct: 632  EAFVKKAQDHLRLGQTVMIKVLECNEDRQRIIVSCKVSSTAASQQQEA-IEKMIVGRSII 690

Query: 553  DVV----TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LD 606
            DV     T +++V      G  +G I   HL+D  +E    +   +K G     L+   D
Sbjct: 691  DVTIVEKTKDSIVAESNDAGL-RGVIFVGHLSDSRIEQNRALLKKLKIGTGLRGLVTDKD 749

Query: 607  NESSNLLLSAKYSLINSAQQ--LPSDASHIH---PNSVVHGYVCNIIETGCFVRFLGRLT 661
             ++    ++ K SLI  A++  LP +   I     NS +HGYV +I E G FV F G+  
Sbjct: 750  TKTRVFNMTCKKSLIRDAEEDLLPLNFEKIKNKDKNSPMHGYVKSISEKGIFVAFHGKFV 809

Query: 662  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 721
            G    S A + +   +SK +Y+ QSV   +L ++ E  R  L++K+   S+         
Sbjct: 810  GLVLPSYATESRDVGISKKFYINQSVTVYLLRIDEENERFLLTMKEPKLSTN-------- 861

Query: 722  FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS------ 773
               +E+  ++ +       +K++  + IG + + +++  +     VV++   H       
Sbjct: 862  ---KEEPKVVGALNPVDQNIKYLSEYTIGRLTKARINSIKKTQLNVVLADNLHGRIDVSE 918

Query: 774  --DVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQ 829
              D +  I +        + G +I   ++    AK  + + +S +   I+   E ++ + 
Sbjct: 919  IFDNFEEIENISTPLVPFKKGDIIDVRVIGFHDAKTHKFLPVSHRN-GINTVLELSAKKS 977

Query: 830  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE-YNHSIGYASVSDYNT--QKFP 886
                + +  + KD+ V  ++   V    ++++ L++ +     I    +SD     +   
Sbjct: 978  VLSNEHRILSFKDVKVGDSLVGFVNNFSKDFVWLTISQSLKAKIPNFELSDEGDIFKSEI 1037

Query: 887  QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 946
               F  G ++   V +L S           + ++ +  S+S    K    ++GS + A +
Sbjct: 1038 DHTFPLGSALKVKVTSLDSEH---------RTVNVSARSTSITVIK--DVEIGSTLPARV 1086

Query: 947  TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1006
             ++    L L  G    G   +T+  D+ S  +E  F   K+G  V+A ++      D+ 
Sbjct: 1087 VKVSSSYLLLDLGNKVTGVAFVTDALDEYSLSLETAFEG-KVGSIVSATVV----DCDVG 1141

Query: 1007 KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1066
             + +  LS++       +I S       D+  G  V G++  V  +   + +SR ++A  
Sbjct: 1142 NNRI-NLSLRGGKPKDRDITS-----HTDLKRGDVVRGFIKTVTEKGIFVYLSRSIQA-- 1193

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            F+  S    + ++E+++ +   + +T  V++      +L L ++  +       +   ND
Sbjct: 1194 FVPVSKLTDAYIKEWKKFYRPMQPITAKVVNCADNSHIL-LTMKESEVNGDLHILKGYND 1252

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL--YGRVHFTELKNICVSDPLSGYDEG 1184
                 I  GDI  G +  +     G+ V++G  L   G  H +E+    V D  + + EG
Sbjct: 1253 -----IQVGDIFEGYVKNVTD--FGVFVKLGNTLNVTGLAHKSEVSEAKVEDLHNLFGEG 1305


>gi|327267495|ref|XP_003218536.1| PREDICTED: protein RRP5 homolog [Anolis carolinensis]
          Length = 1816

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 367/1409 (26%), Positives = 649/1409 (46%), Gaps = 169/1409 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANED----N 56
            ++++ GM L G V E ++ +LVI LP GL G  +     DA + IL+ ++  +E     +
Sbjct: 79   ESLTDGMLLLGCVKEAHQLELVISLPNGLTGFVQVTQICDAYNKILNTQVATDEHLEDLS 138

Query: 57   LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             L  +F  G +V C V+ L+  K + G+R I LS+    + K L+  T++ GM+L+  + 
Sbjct: 139  SLSDLFFPGMVVRCAVVNLE--KTKAGRRSIQLSVNPKDVNKALNSSTLRPGMLLSGCIA 196

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+P+   FLPR        + N G ++K G  L  ++  +    +++ +
Sbjct: 197  SVEDHGYLIDIGVPAAKAFLPRQKAQGYLQSNNKGAELKIGQYLNCLIEDVKNNGRIIRI 256

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     ++  +  + +  S+  L+PG++V  +V+ +  +G+ L FL+ FTG VD  H  +
Sbjct: 257  SISQAEIAAAIATEEQNWSLSNLLPGLVVKAQVREVTPSGMSLGFLSSFTGIVDFMHKNH 316

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T     Y+  + V A IL  +PT++A+ L+L P  L      S +   ++G I + 
Sbjct: 317  LKGRT-----YSPGEMVKACILSNNPTTKAIRLSLRPAFLQPGTQLSQLCSDRIGMIVEN 371

Query: 289  SKVVRV--DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 346
            SKV       G   +LD  S   +   +++ S ++ +      +K+K G+  + RI+ + 
Sbjct: 372  SKVKTFLSKTGAIFVLDDGSLGFAHQKHLSDSRLSFKP-----EKFKPGNEHKCRIIEYS 426

Query: 347  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 406
             ++ +A   LK +  +     + D+ PG V++G ++ +  FG  V+    +K L P  H+
Sbjct: 427  LMDDMALLSLKQNIMDAPFLKYQDIHPGQVLEGTILTLKPFGMHVKLTEYIKGLVPCLHL 486

Query: 407  SEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            ++  + +P KK+  GA +  RVL    ++++I +T KKTLV SKL IL+SY +A   LIT
Sbjct: 487  ADVPLKQPEKKYSEGASVKCRVLVSIPEARKIVLTLKKTLVNSKLPILASYEDAKPGLIT 546

Query: 465  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            HG++    + GC V+FYN ++G  P++ELGL P   P  +++ GQVVK  ++   P   +
Sbjct: 547  HGFVVCAREFGCIVKFYNDIKGLVPKNELGLPPLTPPQEVFYEGQVVKVMVLKCEPEQGK 606

Query: 525  INLSFMM----------------KPTRVSED----DLVKLGSLVSGVVDVVTPNAVVVYV 564
            + LSF +                K  ++ E+    D+  L     G+   + PN +  Y 
Sbjct: 607  VLLSFNLTDNPLDKTGRGEKTSKKQEKIYENAQVADVKILKKKDDGLDITILPNNISAY- 665

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSA 624
                     +P  HL+D++ H+ +    +K       ++ L ++  +L LS K +L+ +A
Sbjct: 666  ---------LPMMHLSDYVSHSKLWSHWLKEDDLLHSVVCLHSKGRHLTLSRKPTLVLAA 716

Query: 625  QQLPS--DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 682
            Q+  +  + S + P  ++ G+V NI+  G FV F   LTG AP+S   D    D    + 
Sbjct: 717  QEEHAVKNFSDLEPGLLLTGFVKNIMPYGVFVEFPYGLTGMAPKSAMSDKFVTDTKDHFV 776

Query: 683  VGQSVRSNILDVNSETGRITLSLKQSCCSSTDA-----SFMQEHFLLEEKIAMLQSSKHN 737
            +GQ+V + + +++ E  RI LSLK S CSS D+     S + ++F   ++I  +   + +
Sbjct: 777  IGQTVIAKVTNIDEEKQRILLSLKLSDCSSEDSVSQSFSLLLQYFKELQEIKSIMKKRDD 836

Query: 738  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-THHQLAGATVESGSVIQ 796
             S  + +        +E  VH+    G  V     +D    +  H  L G  V  G   +
Sbjct: 837  SSVAQRLCEIKPAQKLELVVHKVETDGSAVFRGTCADGLTVVAAHSHLGGKNVAVGEKAE 896

Query: 797  AAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIV 856
            A +L        +D     +++    E  S++            K L +     AIV+ V
Sbjct: 897  AVVL-------YIDYLKAKIYVSLREELLSSK-----------PKKLTLDSQYEAIVQHV 938

Query: 857  KENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMA--------LPSSS 907
               Y V SL      I     S +N T +F  ++   GQSV+  +          L +  
Sbjct: 939  ATEYSVASLIGTGQLIAIPVTSHFNDTFRFDSEKLKMGQSVMVVLKMVERGDYGLLLAVQ 998

Query: 908  TAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 967
              G+ +  +++  ++E         K S  VG +V+  +  +KP  + +       G IH
Sbjct: 999  APGKRMTAIRSRRDSEALEETLPTVKHSLCVGDVVKGTVKSVKPTHVLVAIDDHLMGSIH 1058

Query: 968  ITEVNDDKSNVVENLF--SNFKIGQTVTARIIA----KSNK--PDMKKSF--LW-ELSIK 1016
             +++ DD   V E  F  S  K+GQ VTAR+I     ++++  P     F   W ELS++
Sbjct: 1059 ASQIVDD---VFEGTFPTSLLKVGQKVTARVIGGREIRTHRYLPITHPHFTQTWPELSVR 1115

Query: 1017 PSMLTVSEIGSKLLFEECDVS--------IGQRVTGYV--YKVDNEWALLTISRHLKAQL 1066
            PS L        +L  E D S         GQ VT +V  Y  + +W  + ++  ++ ++
Sbjct: 1116 PSELKGE--NKTVLGPEDDKSEETLKLFKPGQTVTCFVKKYNTEKKWLEVEVTPDIRGRI 1173

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              L  + +P  L++    F  G+A+   V   +     + L L     G+          
Sbjct: 1174 HELLLSLKPKILKKPGNFFKTGQALIATVTGCDTTGTKVYLSL----SGVYS-------- 1221

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                 + +G I  G I  ++  V GL V +     G+V    L +         Y E   
Sbjct: 1222 -----LEKGTITLGCIKSVIPHV-GLQVTLPFGRTGKVSLFHLSD--------SYTE--- 1264

Query: 1187 DPLSGYDEGQFVKCKVL-EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1245
             PL  +  G+ V+C VL +  +T++      LSLR S     S N       ++ P   +
Sbjct: 1265 QPLEDFSVGKIVRCYVLSDEDKTIK------LSLRQSRVSPKSHNK------IEDP--EI 1310

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGK 1302
              ++++  + +++GYVK++T+ G    LS  +   + L  ++   V       K    G+
Sbjct: 1311 ASLDNIKKDQLIRGYVKSITATGILFRLSDSVVGCIPLQRITPVCVPDHSLCAKYIHPGQ 1370

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
            L+  +V S+      VE++L   D+   S
Sbjct: 1371 LLTAKVFSINKAENLVELSLLPEDTGNPS 1399



 Score =  300 bits (768), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 252/830 (30%), Positives = 402/830 (48%), Gaps = 105/830 (12%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLF---ILDSAYE---PSEL----QEFQRRF 1085
            + +G  V G V  V     L+ I  HL   +    I+D  +E   P+ L    Q+   R 
Sbjct: 1027 LCVGDVVKGTVKSVKPTHVLVAIDDHLMGSIHASQIVDDVFEGTFPTSLLKVGQKVTARV 1086

Query: 1086 HIGKAVTGH----VLSINKEKKLLRLVLRPFQDGISDKTV-----DISNDNMQTFIHEGD 1136
              G+ +  H    +   +  +    L +RP +    +KTV     D S + ++ F   G 
Sbjct: 1087 IGGREIRTHRYLPITHPHFTQTWPELSVRPSELKGENKTVLGPEDDKSEETLKLF-KPGQ 1145

Query: 1137 IVGGRISKILSGVGGLVVQIGPHLYGRVH--FTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
             V   + K  +    L V++ P + GR+H     LK   +  P + +  GQ         
Sbjct: 1146 TVTCFVKKYNTEKKWLEVEVTPDIRGRIHELLLSLKPKILKKPGNFFKTGQ--------- 1196

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
                      +  TV G       +  SL G+ S                LEK       
Sbjct: 1197 ---------ALIATVTGCDTTGTKVYLSLSGVYS----------------LEK------G 1225

Query: 1255 MIVQGYVKNVTSK-GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
             I  G +K+V    G  + L      KV L +LSD Y E P ++F +GK+V   VLS E 
Sbjct: 1226 TITLGCIKSVIPHVGLQVTLPFGRTGKVSLFHLSDSYTEQPLEDFSVGKIVRCYVLSDE- 1284

Query: 1314 LSKRVEVTLKTSDSRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
              K ++++L+ S     S +     EI +L N+    ++ G +K + + G+   + ++ +
Sbjct: 1285 -DKTIKLSLRQSRVSPKSHNKIEDPEIASLDNIKKDQLIRGYVKSITATGILFRLSDS-V 1342

Query: 1369 VGLCHVSELSE----DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1424
            VG   +  ++     DH    + I+  G+ +  K+  ++K +  + L +      N +  
Sbjct: 1343 VGCIPLQRITPVCVPDHSLCAKYIH-PGQLLTAKVFSINKAENLVELSLLPEDTGNPSII 1401

Query: 1425 LQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGS---------------L 1469
             ++ S E +   ++      R+S  E   V  +     +ED  S                
Sbjct: 1402 PELCSSETNTNLMKTRKRKRRNSENEQQQVKPKKRVHCTEDDDSGVEIYCREEEEEEKHN 1461

Query: 1470 VLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDE----------AKTIDEKNNRHA 1519
            VL   + R  +  L+++      +  N ++       E           +T  +K  +  
Sbjct: 1462 VLFFYQQRKEISRLKISTSFTWEEGLNVLNTAMLKPKEQSSDSEEEDDTETTTKKQTKKQ 1521

Query: 1520 KKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVE 1578
            ++ EK++ E+E+   E  L++ +  P+T D+F+RLV S+P+SS +W++YMAF L   ++E
Sbjct: 1522 RELEKQKAEKELSKLEAALMDPNRKPQTADDFDRLVLSNPDSSILWLQYMAFHLQATEIE 1581

Query: 1579 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVH 1638
            KAR++AERAL+TI+ REE EKLN+WVA  NLEN YG   EEA++KVF+RA+QY +P KV 
Sbjct: 1582 KARAVAERALKTISFREEQEKLNVWVALLNLENMYGT--EEALMKVFERAIQYNEPLKVF 1639

Query: 1639 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLS 1697
              L  +Y  +E+ K AD+L   M+K+F+    VW++    LLK+   E    ++ RAL  
Sbjct: 1640 QQLADIYTGSEKYKEADDLYNTMLKRFRQEKSVWVKYSTFLLKRGLLEAAHRLLPRALKC 1699

Query: 1698 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1757
            LP  +H+  IS+ A LEF+ G ++ G+++FE  LS YPKRTD+WS+Y+D  I+ G    +
Sbjct: 1700 LPEKEHVDVISKLAQLEFQFGDSEHGKAIFENTLSTYPKRTDIWSVYIDMIIKHGSQKEV 1759

Query: 1758 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            R +FER I LSL  KKMKF FK+YLEYEK  G  E ++ VK  A+EYVES
Sbjct: 1760 RDIFERVIHLSLAAKKMKFFFKRYLEYEKKYGTAETVQVVKAAALEYVES 1809



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 141/334 (42%), Gaps = 45/334 (13%)

Query: 1083 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1142
            R +  G+ V   +LS N   K +RL LRP       +   + +D +   +        ++
Sbjct: 320  RTYSPGEMVKACILSNNPTTKAIRLSLRPAFLQPGTQLSQLCSDRIGMIVE-----NSKV 374

Query: 1143 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
               LS  G + V       G + F   K++  SD    +   +F P      G   KC++
Sbjct: 375  KTFLSKTGAIFVLDD----GSLGFAHQKHL--SDSRLSFKPEKFKP------GNEHKCRI 422

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            +E S          LSL+ ++              +D P     K +D+ P  +++G + 
Sbjct: 423  IEYSLMDDMAL---LSLKQNI--------------MDAP---FLKYQDIHPGQVLEGTIL 462

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             +   G  + L+  +   V   +L+D  ++ PEK++  G  V  RVL   P ++++ +TL
Sbjct: 463  TLKPFGMHVKLTEYIKGLVPCLHLADVPLKQPEKKYSEGASVKCRVLVSIPEARKIVLTL 522

Query: 1323 KTSDSRTASQSEINNLSNLH---VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K    +T   S++  L++      G I  G +     +G  +   N ++ GL   +EL  
Sbjct: 523  K----KTLVNSKLPILASYEDAKPGLITHGFVVCAREFGCIVKFYN-DIKGLVPKNELGL 577

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
              +   + ++  G+ VKV +LK + E+ ++ L  
Sbjct: 578  PPLTPPQEVFYEGQVVKVMVLKCEPEQGKVLLSF 611



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 118/583 (20%), Positives = 230/583 (39%), Gaps = 77/583 (13%)

Query: 171 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
           L SD     K   KD + ++ + L  GM++   V+   +  +++S     TG V +  + 
Sbjct: 58  LKSDERAALKINAKDFELLTAESLTDGMLLLGCVKEAHQLELVISLPNGLTGFVQVTQIC 117

Query: 231 NTF-PTTNWKNDYNQHKK--------------VNARILFVDPTS---RAVGLTLNPYLLH 272
           + +    N +   ++H +              V   ++ ++ T    R++ L++NP  ++
Sbjct: 118 DAYNKILNTQVATDEHLEDLSSLSDLFFPGMVVRCAVVNLEKTKAGRRSIQLSVNPKDVN 177

Query: 273 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP-----AYVTISDV-AEEEVR 326
                S ++ G +         D G  + + +P+     P      Y+  ++  AE ++ 
Sbjct: 178 KALNSSTLRPGMLLSGCIASVEDHGYLIDIGVPAAKAFLPRQKAQGYLQSNNKGAELKIG 237

Query: 327 K-----LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 381
           +     +E     G  +R+ I        +AT     S         S++ PG+VVK +V
Sbjct: 238 QYLNCLIEDVKNNGRIIRISISQAEIAAAIATEEQNWSL--------SNLLPGLVVKAQV 289

Query: 382 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVT 439
             V   G  + F      +    H +  +    G+ +  G  +   +L     +K I ++
Sbjct: 290 REVTPSGMSLGFLSSFTGIVDFMHKNHLK----GRTYSPGEMVKACILSNNPTTKAIRLS 345

Query: 440 HKKTLVKSKLAILSSYAEATDRLITHGWI-TKIEKHGCFVRFYNGVQGFAPRSELGLDPG 498
            +   ++    +    ++    ++ +  + T + K G      +G  GFA +  L     
Sbjct: 346 LRPAFLQPGTQLSQLCSDRIGMIVENSKVKTFLSKTGAIFVLDDGSLGFAHQKHLSDSRL 405

Query: 499 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD 553
                 +  G   KCRI   I  S   +++ +     + +   +K      G ++ G + 
Sbjct: 406 SFKPEKFKPGNEHKCRI---IEYSLMDDMALLSLKQNIMDAPFLKYQDIHPGQVLEGTIL 462

Query: 554 VVTPNAVVVYVIAKGYSKGTIPTEHLAD---------HLEHATVMKSVIKPGYEFDQLLV 604
            + P    ++V    Y KG +P  HLAD         + E A+V   V          LV
Sbjct: 463 TLKPFG--MHVKLTEYIKGLVPCLHLADVPLKQPEKKYSEGASVKCRV----------LV 510

Query: 605 LDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
              E+  ++L+ K +L+NS  +LP  AS+    P  + HG+V    E GC V+F   + G
Sbjct: 511 SIPEARKIVLTLKKTLVNS--KLPILASYEDAKPGLITHGFVVCAREFGCIVKFYNDIKG 568

Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
             P+++          + +Y GQ V+  +L    E G++ LS 
Sbjct: 569 LVPKNELGLPPLTPPQEVFYEGQVVKVMVLKCEPEQGKVLLSF 611



 Score = 47.4 bits (111), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 6/153 (3%)

Query: 1330 ASQSE--INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
            A+Q E  + N S+L  G ++ G +K +  YG+F+      L G+   S +S+  V + + 
Sbjct: 715  AAQEEHAVKNFSDLEPGLLLTGFVKNIMPYGVFVEFP-YGLTGMAPKSAMSDKFVTDTKD 773

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMK-SSYFKNDADNLQMSSEEESDEAIEEVGSYNRS 1446
             +  G+ V  K+  +D+EK+RI L +K S     D+ +   S   +  + ++E+ S  + 
Sbjct: 774  HFVIGQTVIAKVTNIDEEKQRILLSLKLSDCSSEDSVSQSFSLLLQYFKELQEIKSIMKK 833

Query: 1447 SLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1479
               ++SSVA +  +++      LV+ ++E+  S
Sbjct: 834  R--DDSSVAQRLCEIKPAQKLELVVHKVETDGS 864


>gi|410076380|ref|XP_003955772.1| hypothetical protein KAFR_0B03400 [Kazachstania africana CBS 2517]
 gi|372462355|emb|CCF56637.1| hypothetical protein KAFR_0B03400 [Kazachstania africana CBS 2517]
          Length = 1715

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 353/1220 (28%), Positives = 584/1220 (47%), Gaps = 184/1220 (15%)

Query: 650  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
            +GC V F G + GF P ++  +       +   +GQ+V   +L V+ E  RI      SC
Sbjct: 616  SGCVVSFFGGIRGFLPNAEISEVFVKRPEEHLRLGQTVSVKLLQVDEEKARIL----TSC 671

Query: 710  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
              S++ S  Q+                           +I +++ GK      F  VV+ 
Sbjct: 672  KISSEQSQEQKD--------------------------VITNLVPGKT-----FIDVVAV 700

Query: 770  EEHSD----------VYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLV 809
            E+  D          + G I    L+ + +E           G+     ++D     ++ 
Sbjct: 701  EKTKDSIIVEMSKTGLRGVIYVGHLSDSRIEQNRAALKKITIGAEFNGLVIDKDVRTQVF 760

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV--NAIVEIVKENYLVLSLPE 867
            +L+LK   I   +      Q  + K   +A    G  +++  N +       ++ L LP 
Sbjct: 761  NLTLKKSLIKAAKNNTLPTQYSEIKSVSKAEALPGYVKSISNNGVFVAFNGKFVGLVLPS 820

Query: 868  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
            Y          D +  K     F   QSV A +  L +     R LL LKA  E      
Sbjct: 821  Y-----AVDSRDIDISKI----FYVNQSVTAYL--LRTDDKNERFLLTLKAQKE------ 863

Query: 928  KRAKKKSSYDV----------------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 971
            + AKK +S ++                G +V A+I  +K  +L +      HGR+ + E+
Sbjct: 864  ETAKKTTSSEIVNPIDPAIQSLNDLTTGKVVSAKIKSVKKNQLNIVIADNIHGRVDVAEI 923

Query: 972  NDDKSNVVE--NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSML 1020
             DD  ++ +     S FK  QTV  +II   N    K         K  + ELS+KPS+L
Sbjct: 924  FDDLKDIKDRKQPLSAFKKDQTVKVKIIGYHNIKSHKFLPITHQVSKGSVLELSMKPSLL 983

Query: 1021 TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1078
               +  SK + E   +++G+ + GYV  +  +N W  LTIS  LKA+L + D A + +EL
Sbjct: 984  NSEDTFSKTIKE---INVGEELVGYVNNFASNNLW--LTISPVLKARLSVFDLAGDNTEL 1038

Query: 1079 QE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1137
             E  +  F +G A+   V SI+ E   +          +++K   + + N    I  G+ 
Sbjct: 1039 SENVEDSFPLGSAIPVKVTSIDSEHGFIT---------VANKYHTMKDINS---IKVGES 1086

Query: 1138 VGGRISKILSGVGGLVVQIGPHLYGRVHFTE-LKNICVSDPLSGYDEGQFDPLSGYDEGQ 1196
            +  RI+KI      +++ +G  L G    T+ L +  V+   + +D+            Q
Sbjct: 1087 LPARIAKIFEKY--ILLDLGNKLTGMAFATDALDDFSVTLQDAFHDKV----------NQ 1134

Query: 1197 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1256
             V   ++ +    +    V LSLR+               D  TP   +   +DL    I
Sbjct: 1135 IVMATIVSLDVDSK---KVNLSLRTK--------------DAKTPT--ITSHDDLKKGDI 1175

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            V   VK+V+ KG F+ LSR L+A V ++ LSD Y++  +K +   + V G+V+  +    
Sbjct: 1176 VHALVKSVSDKGIFLHLSRTLEAFVPVTMLSDSYLKEWKKFYKSMQHVVGKVVKCDE-DA 1234

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVS 1375
            R+ +TL+ S+        + N  ++ VGD+V G +K V  +G+F+ ++NT N+ GL H+S
Sbjct: 1235 RILITLRESEV-NGELKVLKNYDDIEVGDVVSGSVKNVTDFGVFVKLDNTVNVSGLAHIS 1293

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEESD 1434
            E+++   ++I  ++  G++VK  +LK + EK+++SL +K+S F     +N +  S++E  
Sbjct: 1294 EIADKKPEDISALFGPGDRVKTIVLKTNPEKKQLSLSLKASRFTTAQVENEEEHSDDEMH 1353

Query: 1435 EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM 1494
            E I E  + N  S  E      +    ++ + G  +    +  AS+      LD  Q   
Sbjct: 1354 EQI-EFDNANEESEDEEQEDESEKAKPQTTNNGLSLSTGFDWTASI------LDQAQESE 1406

Query: 1495 DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD--APRTPDEFER 1552
             +  SQ++  T+               K+ + R++  R  E++ ++ +  AP +  +FER
Sbjct: 1407 ASEDSQDEDFTE--------------TKKHKNRKKRARITEDKTIDINTRAPESVSDFER 1452

Query: 1553 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1612
            ++  +PNSS VW+ YMAF L +++VEKAR IAERAL+TIN R+E EKLNIW+A  NLEN 
Sbjct: 1453 MIMGNPNSSIVWMNYMAFQLQLSEVEKAREIAERALKTINFRDEAEKLNIWIAMLNLENT 1512

Query: 1613 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKV 1671
            +G    + +  VF+RA QY D   +H  LL +Y+ +E+     EL     KKF      +
Sbjct: 1513 FGT--SDTLEDVFKRACQYMDSFTIHNKLLTIYQISEKYNQTSELYKSAAKKFGSEKVSI 1570

Query: 1672 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1730
            W+     L+ Q Q+E  ++++ +AL  LP+  HI+ + + A LEF  G A+RGRS+FEG+
Sbjct: 1571 WISWGDFLITQKQEEEARSILSKALKVLPKRDHIELVRKFAQLEFTKGDAERGRSLFEGL 1630

Query: 1731 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1790
            +++ PKR DLW++Y+DQEI+L +   +  L ER I   +  K+ KF F K+L++E++ G+
Sbjct: 1631 IADAPKRIDLWNVYIDQEIKLKEKKKVEELLERVILKKITKKQAKFFFNKWLQFEEAQGD 1690

Query: 1791 EERIEYVKQKAMEYVESTLA 1810
             + IEYVK KA EYVE + A
Sbjct: 1691 SKAIEYVKAKATEYVEKSKA 1710



 Score =  169 bits (427), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 200/769 (26%), Positives = 340/769 (44%), Gaps = 92/769 (11%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL-------------- 46
           + +  G  L G V+++   D+ I    G+ G   L R +D    IL              
Sbjct: 117 KTLKVGSSLLGQVSKITRGDICITCSDGISGYVNLTRISDQFTTILEDLDDDMESDDETK 176

Query: 47  -DNEIEANEDNL--------LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSL 91
            D E + ++D          LP +   F +GQ + C ++    L+   K+  KR+I  ++
Sbjct: 177 NDEEYDLSDDEEGKERKAAELPDLNDYFKLGQWLRCSIVSNSTLEPKSKQNNKRRIEFTI 236

Query: 92  RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP 151
             +L+   +S E +Q+ M L   VKSIEDHG IL  G+   TGF+ + ++     + V  
Sbjct: 237 EPTLV-NAMSEEDLQKFMPLQCAVKSIEDHGAILDIGIDGMTGFITKKDVPNFDKLLV-G 294

Query: 152 GLLLQGVVRSIDRTRKV-VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 210
            + L  V +  +R+  V +  ++  + +S+         S+D +VPG +V    Q + + 
Sbjct: 295 SVFLGNVYKKTERSVNVNLDFANKKNIISQIS-------SVDAIVPGQLVDLLCQQVSQY 347

Query: 211 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL--FVDPT-SRAVGLTLN 267
           G+         G +   HL   F     K+ +     V ARIL   +D    + + L+  
Sbjct: 348 GISGKVFGLVPGFIGSSHLLK-FKEEELKHSFAIGSNVRARILASLIDGNGDKTLILSTL 406

Query: 268 PYL------LHNRAPPSHVKVGDIYDQSKVVRVDRG-LGLLLDIPSTPVSTPAYVTISDV 320
           P++      L   +      +G I++ S V   D   L L LD             +  V
Sbjct: 407 PHIQSLETDLKEISALDAFPIGYIFENSIVKGRDSDYLYLALDEDR----------LGKV 456

Query: 321 AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG-MVVKG 379
              ++ KLE        +R R+LG+  ++ +    +  +  +       D+  G ++   
Sbjct: 457 HRSKIGKLESI----DNLRARVLGYNSVDKIYELAVDPNVLKMQYIRTKDIPAGELLAAC 512

Query: 380 KVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RIT 437
           ++  V S G  ++   G   A  P  H+S+  +V P +KFK+G+++  RVL V  + R+ 
Sbjct: 513 EIETVSSSGIQLKILNGQFTASVPPLHISDTRLVYPERKFKIGSKVKGRVLTVDQRGRVF 572

Query: 438 VTHKKTLVK---SKLAILSSYAEA----TDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           +T KK+LV     +  I+SS+A A     +   T   +      GC V F+ G++GF P 
Sbjct: 573 MTLKKSLVNIDTEETPIVSSFALAQEVKNNNKKTVATVQSFRPSGCVVSFFGGIRGFLPN 632

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG 550
           +E+       P     +GQ V  +++       RI  S  +   +  E   V + +LV G
Sbjct: 633 AEISEVFVKRPEEHLRLGQTVSVKLLQVDEEKARILTSCKISSEQSQEQKDV-ITNLVPG 691

Query: 551 --VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLL 603
              +DVV    T ++++V +   G  +G I   HL+D  +E        I  G EF+ L+
Sbjct: 692 KTFIDVVAVEKTKDSIIVEMSKTGL-RGVIYVGHLSDSRIEQNRAALKKITIGAEFNGLV 750

Query: 604 VLDNESSNLL-LSAKYSLINSAQQ--LPSDASHIHPNS---VVHGYVCNIIETGCFVRFL 657
           +  +  + +  L+ K SLI +A+   LP+  S I   S    + GYV +I   G FV F 
Sbjct: 751 IDKDVRTQVFNLTLKKSLIKAAKNNTLPTQYSEIKSVSKAEALPGYVKSISNNGVFVAFN 810

Query: 658 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           G+  G    S AVD +  D+SK +YV QSV + +L  + +  R  L+LK
Sbjct: 811 GKFVGLVLPSYAVDSRDIDISKIFYVNQSVTAYLLRTDDKNERFLLTLK 859



 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 13/262 (4%)

Query: 468  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH--VGQVVKCRIMSSIPASRRI 525
            I KI +    +   N + G A  ++   D        +H  V Q+V   I+S    S+++
Sbjct: 1091 IAKIFEKYILLDLGNKLTGMAFATDALDDFSVTLQDAFHDKVNQIVMATIVSLDVDSKKV 1150

Query: 526  NLSFMMK----PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 581
            NLS   K    PT  S DDL K G +V  +V  V+   + +++      +  +P   L+D
Sbjct: 1151 NLSLRTKDAKTPTITSHDDLKK-GDIVHALVKSVSDKGIFLHL--SRTLEAFVPVTMLSD 1207

Query: 582  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 641
               +    K   K        +V  +E + +L++ + S +N   ++  +   I    VV 
Sbjct: 1208 S--YLKEWKKFYKSMQHVVGKVVKCDEDARILITLRESEVNGELKVLKNYDDIEVGDVVS 1265

Query: 642  GYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
            G V N+ + G FV+      ++G A  S+  D +  D+S  +  G  V++ +L  N E  
Sbjct: 1266 GSVKNVTDFGVFVKLDNTVNVSGLAHISEIADKKPEDISALFGPGDRVKTIVLKTNPEKK 1325

Query: 700  RITLSLKQSCCSSTDASFMQEH 721
            +++LSLK S  ++      +EH
Sbjct: 1326 QLSLSLKASRFTTAQVENEEEH 1347



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 41/179 (22%)

Query: 1261 VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1319
            ++ V+S G  + +L+ +  A V   ++SD  +  PE++F IG  V GRVL+V+    RV 
Sbjct: 514  IETVSSSGIQLKILNGQFTASVPPLHISDTRLVYPERKFKIGSKVKGRVLTVDQRG-RVF 572

Query: 1320 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN------------ 1367
            +TLK S            L N+   +  I     V S+ L   ++N N            
Sbjct: 573  MTLKKS------------LVNIDTEETPI-----VSSFALAQEVKNNNKKTVATVQSFRP 615

Query: 1368 ----------LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
                      + G    +E+SE  V   E   R G+ V VK+L+VD+EK RI    K S
Sbjct: 616  SGCVVSFFGGIRGFLPNAEISEVFVKRPEEHLRLGQTVSVKLLQVDEEKARILTSCKIS 674



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 19/144 (13%)

Query: 5    NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH- 63
            +I  G  L   +A++ EK +++ L   L G+A A DALD              L   FH 
Sbjct: 1080 SIKVGESLPARIAKIFEKYILLDLGNKLTGMAFATDALDDF---------SVTLQDAFHD 1130

Query: 64   -VGQLVSCIVLQLDDDKKEIGKRKIWLSLRL--SLLYKGLSLETVQEGMVLTAYVKSIED 120
             V Q+V   ++ LD D K     K+ LSLR   +      S + +++G ++ A VKS+ D
Sbjct: 1131 KVNQIVMATIVSLDVDSK-----KVNLSLRTKDAKTPTITSHDDLKKGDIVHALVKSVSD 1185

Query: 121  HGYILHFGLPSFTGFLPRNNLAEN 144
             G  LH    +   F+P   L+++
Sbjct: 1186 KGIFLHLS-RTLEAFVPVTMLSDS 1208



 Score = 41.6 bits (96), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 206/963 (21%), Positives = 380/963 (39%), Gaps = 177/963 (18%)

Query: 157  GVVRSIDRTR----------KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 206
            G + SID  R          K+  L+ DP+ +     +     + D+    ++ +  +++
Sbjct: 462  GKLESIDNLRARVLGYNSVDKIYELAVDPNVLKMQYIR-----TKDIPAGELLAACEIET 516

Query: 207  ILENGVMLSFLT-YFTGTVDIFHLQNT---FPTTNWKNDYNQHKKVNARILFVDPTSRAV 262
            +  +G+ L  L   FT +V   H+ +T   +P   +K       KV  R+L VD   R V
Sbjct: 517  VSSSGIQLKILNGQFTASVPPLHISDTRLVYPERKFK----IGSKVKGRVLTVDQRGR-V 571

Query: 263  GLTLNPYLLH---NRAP--PSHVKVGDIYDQSK----VVRVDRGLGLLLDIPSTPVSTPA 313
             +TL   L++      P   S     ++ + +K     V+  R  G ++           
Sbjct: 572  FMTLKKSLVNIDTEETPIVSSFALAQEVKNNNKKTVATVQSFRPSGCVVSFFG---GIRG 628

Query: 314  YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 373
            ++  ++++E  V++ E+  + G  V V++L     +       K S+ +       DV  
Sbjct: 629  FLPNAEISEVFVKRPEEHLRLGQTVSVKLLQVDEEKARILTSCKISSEQSQ--EQKDVIT 686

Query: 374  GMVVKGK----VIAVDSF--GAIVQFP-GGVKALCPLPHMSEFEIVKPG---KKFKVGAE 423
             +V  GK    V+AV+      IV+    G++ +  + H+S+  I +     KK  +GAE
Sbjct: 687  NLV-PGKTFIDVVAVEKTKDSIIVEMSKTGLRGVIYVGHLSDSRIEQNRAALKKITIGAE 745

Query: 424  LVFRVLG--VKSKRITVTHKKTLVKSKL--AILSSYAE---ATDRLITHGWITKIEKHGC 476
                V+   V+++   +T KK+L+K+     + + Y+E    +      G++  I  +G 
Sbjct: 746  FNGLVIDKDVRTQVFNLTLKKSLIKAAKNNTLPTQYSEIKSVSKAEALPGYVKSISNNGV 805

Query: 477  FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF------M 530
            FV F     G    S        + S +++V Q V   ++ +   + R  L+        
Sbjct: 806  FVAFNGKFVGLVLPSYAVDSRDIDISKIFYVNQSVTAYLLRTDDKNERFLLTLKAQKEET 865

Query: 531  MKPTRVSE------------DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
             K T  SE            +DL   G +VS  +  V  N + + VIA     G +    
Sbjct: 866  AKKTTSSEIVNPIDPAIQSLNDLT-TGKVVSAKIKSVKKNQLNI-VIADNIH-GRVDVAE 922

Query: 579  LADHLEHATVMKSVIKPGYEFDQLLVLD-------------------NESSNLLLSAKYS 619
            + D L+     K  +   ++ DQ + +                    ++ S L LS K S
Sbjct: 923  IFDDLKDIKDRKQPL-SAFKKDQTVKVKIIGYHNIKSHKFLPITHQVSKGSVLELSMKPS 981

Query: 620  LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR----FLGRLTGFAPRSKAVDGQRA 675
            L+NS          I+    + GYV N      ++        RL+ F      + G   
Sbjct: 982  LLNSEDTFSKTIKEINVGEELVGYVNNFASNNLWLTISPVLKARLSVF-----DLAGDNT 1036

Query: 676  DLSK----TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 731
            +LS+    ++ +G ++   +  ++SE G IT++ K       ++  + E   L  +IA  
Sbjct: 1037 ELSENVEDSFPLGSAIPVKVTSIDSEHGFITVANKYHTMKDINSIKVGES--LPARIA-- 1092

Query: 732  QSSKHNGSELKWVEGFI---IGSVIEGKVHES---NDFGVVVSFEEHSDVYGFITHHQLA 785
                      K  E +I   +G+ + G    +   +DF V +    H  V      +Q+ 
Sbjct: 1093 ----------KIFEKYILLDLGNKLTGMAFATDALDDFSVTLQDAFHDKV------NQIV 1136

Query: 786  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 845
             AT+ S        LDV    + V+LSL+T                 K     +  DL  
Sbjct: 1137 MATIVS--------LDV--DSKKVNLSLRT--------------KDAKTPTITSHDDLKK 1172

Query: 846  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPS 905
               V+A+V+ V +  + L L     +    ++   +  K  +K + + Q V+  V+    
Sbjct: 1173 GDIVHALVKSVSDKGIFLHLSRTLEAFVPVTMLSDSYLKEWKKFYKSMQHVVGKVVKCDE 1232

Query: 906  SSTAGRLLLLLKAISETETSSS-KRAKKKSSYDVGSLVQAEITEIKPLELRLKFG--IGF 962
             +   R+L+ L+   E+E +   K  K     +VG +V   +  +    + +K    +  
Sbjct: 1233 DA---RILITLR---ESEVNGELKVLKNYDDIEVGDVVSGSVKNVTDFGVFVKLDNTVNV 1286

Query: 963  HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1022
             G  HI+E+ D K   +  LF     G  V   I+ K+N P+ K+     LS+K S  T 
Sbjct: 1287 SGLAHISEIADKKPEDISALFGP---GDRVKT-IVLKTN-PEKKQ---LSLSLKASRFTT 1338

Query: 1023 SEI 1025
            +++
Sbjct: 1339 AQV 1341


>gi|366991363|ref|XP_003675447.1| hypothetical protein NCAS_0C00900 [Naumovozyma castellii CBS 4309]
 gi|342301312|emb|CCC69080.1| hypothetical protein NCAS_0C00900 [Naumovozyma castellii CBS 4309]
          Length = 1722

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 346/1201 (28%), Positives = 576/1201 (47%), Gaps = 152/1201 (12%)

Query: 650  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
            +GC V F G +T F P ++  +       +   +GQ++   +L ++ E  R+ ++    C
Sbjct: 619  SGCIVAFFGGMTAFLPNAEISEVFVRKPEEHLRLGQTIVVKLLKIDQENARMLVT----C 674

Query: 710  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
              S D                 Q+ K   +  K + G    S+++  V E     V+V  
Sbjct: 675  KISND-----------------QAEKKKETIEKLIPG---RSMVKVNVVEKTKDSVIVEL 714

Query: 770  EEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFID 819
             E S + G I    L+ A +E           GS ++  ++D     ++ +LSLK   I 
Sbjct: 715  PETS-LRGVIYVGHLSDARIEQNRAAIKKIAIGSELKGLVIDKDARTQVFNLSLKQSLIK 773

Query: 820  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN--YLVLSLPEYNHSIGYASV 877
              +   S       K K + +   G  ++++     V  N  ++ L LP Y        +
Sbjct: 774  DAKNEVSPLTYADIKSKSKTTPLHGYIKSISNKGLFVAFNGKFVGLVLPSYAVESRDVDI 833

Query: 878  SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS----------- 926
            S         K F   QSV A +  L S     R LL L+  S  + SS           
Sbjct: 834  S---------KTFYINQSVTAYL--LRSDDDNERFLLTLRTPSTKDDSSKVTGTETLKPI 882

Query: 927  SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFS 984
                K    +  G +V+ +I  IK  +L +      HGRI I EV D  S++    +   
Sbjct: 883  DPAMKDLKDFTTGKVVKVQIKGIKKNQLNVVLADNLHGRIDIAEVFDSFSDIKNATHPLI 942

Query: 985  NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1035
            +FK G  + A+II   +    +         K  + ELS+KPS +   +I +       D
Sbjct: 943  DFKKGNIIDAKIIGTHDIKSHRFLPISHHAVKGSVLELSLKPSQMRSKDIKT---LSISD 999

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGH 1094
            V++G  +TG+V    +    LT+S  LKA++ + D A +  +  E  +  F +G A+   
Sbjct: 1000 VAVGDELTGFVNNYGSNTLWLTVSPTLKAKISLFDLAEDGLKSSEKVEDNFPLGCALPVK 1059

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            V SI+ E  ++ +  R           +IS ++++     GD V  RI KI      +++
Sbjct: 1060 VTSIDTEHGVVNVTGRSH--------TEISFESLKV----GDNVPSRIIKIADSY--VLL 1105

Query: 1155 QIGPHLYGRVHFTE-LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
             +G  ++G    T+ L +  V  PL    +G         E   V  K++ I    +   
Sbjct: 1106 DLGNKIHGIAFITDALDDFSV--PLKEAYKGM--------ENDIVSAKIVSIDAENK--- 1152

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
             V LSLR+      S +S                  D+S   +V G VK+++ KG F+ L
Sbjct: 1153 KVNLSLRTESAKTPSISSH----------------TDISQGDVVHGLVKSISDKGIFVYL 1196

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
            SR ++A V +S LSD Y++  +K F   + V G+V++ E  S R+ +TL+ S+       
Sbjct: 1197 SRSINAFVPVSKLSDTYLKDWKKFFKPMQYVIGKVVNAEEDS-RILLTLRESEV-NGDLK 1254

Query: 1334 EINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAG 1392
             + N  ++ V +I  G +K V  +G+F+ ++NT N+ GL H SE+++   +++ +++  G
Sbjct: 1255 ILKNYDDIKVNEIYNGSVKNVTDFGVFVKLDNTVNVTGLAHNSEIADQKPEDLASLFGVG 1314

Query: 1393 EKVKVKILKVDKEKRRISLGMKSSYFKNDADNL---QMSSEEESDEAIEEVGSYNRSSLL 1449
            ++VK  +LKV+ EK+++SL +K+S F N  ++    + + + + DE +E V   N  S  
Sbjct: 1315 DRVKAYVLKVNPEKKQLSLSLKASRFGNTNESKVEEKETVDADGDEIMEAVDYNNAPSDN 1374

Query: 1450 ENSSVAVQDMDME---SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTD 1506
            EN +  + +   +   S DG SL     +  AS+      LD  Q +  +   ++   T 
Sbjct: 1375 ENETEEILETVSKPKISTDGLSLSTG-FDWTASI------LDQAQAEESSEEDEDFTET- 1426

Query: 1507 EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIK 1566
                   K NRH K+K+    ++ I       +   AP +  +FERL+  +PNSS +W+ 
Sbjct: 1427 -------KRNRHKKRKQTIVEDKTID------INTRAPESVADFERLIIGNPNSSVIWMN 1473

Query: 1567 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1626
            YMAF L ++++EKAR +AERAL+TIN REE+EK NIW+A  NLEN +G+  +E +  VF+
Sbjct: 1474 YMAFQLQLSEIEKARELAERALKTINFREESEKQNIWMAMLNLENTFGS--DETLEDVFK 1531

Query: 1627 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQ 1684
            RA QY D   +H  LL +Y+ + +   A EL     KKF   +  +W+     L    + 
Sbjct: 1532 RACQYMDSFTMHNRLLSIYQMSGKIDKAAELFKITAKKFGSENVSIWVSWGDFLTSHGKA 1591

Query: 1685 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1744
            +  + ++  AL +LP+  HI+ + + A LEF  G  + GRS+FEG++++ PKR D+W++Y
Sbjct: 1592 QEARGILSNALKALPKRDHIEVVRKFAQLEFAKGDPEGGRSLFEGLIADAPKRIDIWNVY 1651

Query: 1745 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804
            LDQEI+  +   +  LFER +S  +  K+ KF F K+LE+E+S  + + +EYVK KA EY
Sbjct: 1652 LDQEIKANEKKKVEDLFERVVSRKITRKQAKFFFNKWLEFEESQNDNKVMEYVKAKATEY 1711

Query: 1805 V 1805
            V
Sbjct: 1712 V 1712



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 284/1204 (23%), Positives = 509/1204 (42%), Gaps = 169/1204 (14%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL----------------- 46
            + +  G  + G ++E+++ D+ I    GL G         P +                 
Sbjct: 114  KTLKIGSLVLGQISEISKTDMCISFTDGLSGYVNLTHISAPFMTILEELDDDMDDDDELE 173

Query: 47   ----DNEIEANEDNL-----------LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKR 85
                D E ++++D             LP++   F VGQ + C V+    L    K+  K+
Sbjct: 174  KKKTDEEYDSSDDEEEKEKATKDSIGLPSLENYFKVGQWLRCSVISNTALLPKDKKNKKK 233

Query: 86   KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS 145
            KI LS+  S++   L+ E +     +   VKSIEDHG +L  G+  FTGF+ + +  E  
Sbjct: 234  KIELSIEPSVV-NTLTEEDIVRSASVQCAVKSIEDHGAMLDIGIDGFTGFISKKDYPEFE 292

Query: 146  GIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRV 204
             +   PG +  G V +  DRT  +    SD       ++      S+D +VPG +V    
Sbjct: 293  KL--LPGAVFLGNVTKKSDRTVTINLDFSDKKAKITHIS------SVDAVVPGQVVDLLC 344

Query: 205  QSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 264
            Q+I  NG++          +   HL+  F     K+++     +  RI+ V      +  
Sbjct: 345  QTITNNGIVGKTFGLVPSFISTAHLR-VFKEEELKHNFAVGSNIPCRIIAV-----LINK 398

Query: 265  TLNPYLLHNRAPPSHVK-----VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS- 318
              +  LL +  P  H+K     +G++ + +        +G L+D  +       Y+ ++ 
Sbjct: 399  ENDKTLLLSTLP--HIKSLKNVLGEVENLTAF-----PIGHLIDSCTVKGRDSDYLYLAM 451

Query: 319  ------DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 372
                  +V    + +LEK  K    ++ R+LGF  ++ L          +       D+ 
Sbjct: 452  DDDRVGEVHSSRIGELEKFDK----LKARVLGFNSIDNLYELSTDPEILKLKYLRSKDIP 507

Query: 373  PGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
             G V+   ++ AV S G  ++ F G  KA+ P  H+S+  +V P +KFK+G+++  RVL 
Sbjct: 508  IGEVLPNCEITAVSSKGIELKIFNGQFKAIVPPMHISDTRLVYPERKFKIGSKVKGRVLN 567

Query: 431  VKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYN 482
            + ++  I VT KKTLV      + +LS++A A +       T   +T     GC V F+ 
Sbjct: 568  INNRGLIYVTLKKTLVNIEDDDIQLLSNFAIAKEIQEKNQKTVATVTAFRPSGCIVAFFG 627

Query: 483  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 542
            G+  F P +E+      +P     +GQ +  +++     + R     M+   ++S D   
Sbjct: 628  GMTAFLPNAEISEVFVRKPEEHLRLGQTIVVKLLKIDQENAR-----MLVTCKISNDQAE 682

Query: 543  K----LGSLVSG----VVDVV--TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKS 591
            K    +  L+ G     V+VV  T ++V+V  + +   +G I   HL+D  +E       
Sbjct: 683  KKKETIEKLIPGRSMVKVNVVEKTKDSVIVE-LPETSLRGVIYVGHLSDARIEQNRAAIK 741

Query: 592  VIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQLPS-----DASHIHPNSVVHGYVC 645
             I  G E   L++  +  + +  LS K SLI  A+   S     D       + +HGY+ 
Sbjct: 742  KIAIGSELKGLVIDKDARTQVFNLSLKQSLIKDAKNEVSPLTYADIKSKSKTTPLHGYIK 801

Query: 646  NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
            +I   G FV F G+  G    S AV+ +  D+SKT+Y+ QSV + +L  + +  R  L+L
Sbjct: 802  SISNKGLFVAFNGKFVGLVLPSYAVESRDVDISKTFYINQSVTAYLLRSDDDNERFLLTL 861

Query: 706  KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDF 763
            + +  +  D+S          K+   ++ K     +K ++ F  G V++ ++   + N  
Sbjct: 862  R-TPSTKDDSS----------KVTGTETLKPIDPAMKDLKDFTTGKVVKVQIKGIKKNQL 910

Query: 764  GVVVSFEEHSDV---YGFITHHQLAGAT-----VESGSVIQAAILDV--AKAERLVDLSL 813
             VV++   H  +     F +   +  AT      + G++I A I+     K+ R + +S 
Sbjct: 911  NVVLADNLHGRIDIAEVFDSFSDIKNATHPLIDFKKGNIIDAKIIGTHDIKSHRFLPISH 970

Query: 814  KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSI 872
              V       +    Q + K  K  +  D+ V   +   V     N L L++ P     I
Sbjct: 971  HAVKGSVLELSLKPSQMRSKDIKTLSISDVAVGDELTGFVNNYGSNTLWLTVSPTLKAKI 1030

Query: 873  GYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSS----STAGRLLLLLKAISETETSS 926
                +++    + +  +  F  G ++   V ++ +     +  GR        S TE S 
Sbjct: 1031 SLFDLAEDGLKSSEKVEDNFPLGCALPVKVTSIDTEHGVVNVTGR--------SHTEISF 1082

Query: 927  SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF 986
                    S  VG  V + I +I    + L  G   HG   IT+  DD S  ++  +   
Sbjct: 1083 -------ESLKVGDNVPSRIIKIADSYVLLDLGNKIHGIAFITDALDDFSVPLKEAYKGM 1135

Query: 987  KIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
            +    V+A+I+  S   + KK     LS++        I S       D+S G  V G V
Sbjct: 1136 E-NDIVSAKIV--SIDAENKKV---NLSLRTESAKTPSISS-----HTDISQGDVVHGLV 1184

Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
              + ++   + +SR + A  F+  S    + L+++++ F   + V G V++  ++ ++L 
Sbjct: 1185 KSISDKGIFVYLSRSINA--FVPVSKLSDTYLKDWKKFFKPMQYVIGKVVNAEEDSRIL- 1241

Query: 1107 LVLR 1110
            L LR
Sbjct: 1242 LTLR 1245


>gi|354546265|emb|CCE42995.1| hypothetical protein CPAR2_206380 [Candida parapsilosis]
          Length = 1728

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 346/1270 (27%), Positives = 597/1270 (47%), Gaps = 182/1270 (14%)

Query: 613  LLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
            L++ + SL+N    ++ S        S  +  V   +  G  V F G L  F P+++  +
Sbjct: 560  LVTLRKSLVNLEDDEILSSFDDAKVGSKTNAIVEKFVHGGVLVSFFGSLRAFLPKTEISE 619

Query: 672  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 731
                D SK   +GQ V   ILD+N E  R+ ++LKQS                       
Sbjct: 620  TFVDDASKYLKLGQVVNVKILDINEEQKRLVVTLKQS----------------------- 656

Query: 732  QSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 790
              S+ + S+   +   I G SV+   V E  +  V++  E  S++ G +   QL+    E
Sbjct: 657  --SQLSASQKTEIANLIPGISVVHAVVVEKKNDSVLIELE-GSNLRGVVHDGQLSDGNYE 713

Query: 791  SGSVIQAAILDVAKAERLV---DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 847
                +   +   +K E L+   DL  +TV         S  +A KKK+      D+  ++
Sbjct: 714  QNRALFKKLEISSKVEVLILEKDLKARTVIA---TAKKSLIEASKKKQLPTDFDDVQPNR 770

Query: 848  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS 907
             +   V+ V    L ++       +  A     +  +   K+F   QS+   V+++ S +
Sbjct: 771  IIKGYVKSVTNLGLFVAFTGRLTGLILAKYVSKSAHEDLSKRFYKYQSLTCKVLSVDSEN 830

Query: 908  TAGRLLLLLKAISETETSS-----SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 962
               R LL +    +++  +         K    Y  G   +A I  +K  +L ++     
Sbjct: 831  K--RFLLTIANGKDSDGDNLINPVDPTKKTIEDYASGIYTKAIIKSVKGTQLNVRLADNL 888

Query: 963  HGRIHITEV---NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD----------MKKSF 1009
            +GR+ +T+      D  N+++ L S F  G+ +  ++I   +  +            K  
Sbjct: 889  NGRVDVTQCFKSTKDIKNLLQPLSSGFHKGEELNVKVIGIHDAKNHTFLPITHNKTNKQT 948

Query: 1010 LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1069
            + ELS++   +    +    L    DV  G +   +V  +D  +  ++IS  +K ++  +
Sbjct: 949  IMELSLQDPQVRKKNLSDLKL---PDVQKGDKFVAFVNNIDRGFVWVSISPSIKGRISFM 1005

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDIS 1124
            D + + S   +F+ ++ IG A+   V  ++ E + L L  R      F+D + DKT    
Sbjct: 1006 DLSDDGSIFYDFENKYPIGAALQVKVKEVDNEHQTLSLTSREQYISKFEDVVKDKT---- 1061

Query: 1125 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1184
                    +   I+  + S +L  +G  V+                +  ++D L+ Y + 
Sbjct: 1062 --------YPARIIKVKDSYVLVDLGDKVIA---------------SSFITDALNDYSD- 1097

Query: 1185 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1244
            + D    +   ++V   VL+I         + +SLR                D D+  K 
Sbjct: 1098 KLD--HAFHVNEYVGATVLDIDV---DQHKISVSLR----------------DKDSMDKT 1136

Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
            +  I+DLS   +V+G+VKNV+S G ++ L R + A V +S+LSD Y++  +K F   + V
Sbjct: 1137 INSIKDLSRGDVVKGFVKNVSSNGVYVSLGRSVYALVRVSDLSDSYLKDWKKFFKPNQSV 1196

Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
             G++++ +    R+ +TLK S+     ++ + +  +L VGD+  G + +   +G+F+ ++
Sbjct: 1197 TGKIINCKE-EGRILMTLKESEVNGELKT-MKSFDDLAVGDVFEGHVTKTTDFGVFVKLD 1254

Query: 1365 NT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
             T N+ GLCH +E+SE+ V N+  ++  G++VKVKILK+D  K+++SLGMK+SYFK+  +
Sbjct: 1255 GTVNVSGLCHHTEISENDVKNVMALFGEGDRVKVKILKIDPSKKQLSLGMKASYFKDFVE 1314

Query: 1424 NLQMSSEEESDEAIEEVGSYNRSSLLE---------NSSVAVQDMDMESEDGGSLV---- 1470
            +     E E D  +++          E         N  V V   D E ED    V    
Sbjct: 1315 D-----ESEVDVEMKDAEEEEEEEEEEEEYESEGSENDDVVV---DAEKEDKEEDVSDDD 1366

Query: 1471 ------LAQIESRASVPP--LEVNLDD------EQPDMDNGISQNQGHTDEAKTIDEKNN 1516
                    + E++A+  P  L  N  D      +Q + +N  S ++   + +K++  K +
Sbjct: 1367 NESGEEDDEEEAQATSEPRSLSTNGFDWTASILDQTEDNNTSSDDEDFVNNSKSLKPKKS 1426

Query: 1517 RHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD 1576
            R   K E +  +   RA          P++  +FERL+  +PNSS +W+ YM+F L +++
Sbjct: 1427 RKQTKVEDKTIDLNTRA----------PQSVADFERLLIGNPNSSILWMNYMSFNLQLSE 1476

Query: 1577 VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1636
            V+KAR I ERAL+TIN REE EKLNIW+A  NLEN +G   +E++  VF++A QY D   
Sbjct: 1477 VDKARQIGERALETINYREEQEKLNIWIALLNLENTFGT--DESLDAVFKKACQYMDSFT 1534

Query: 1637 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRAL 1695
            +H  L  +   +E+   A++L   M KKF  +   W+     LL Q      + V+ +AL
Sbjct: 1535 IHQKLASILIMSEKFDQANDLFKVMSKKFGQNVLTWVLYGSFLLDQDANNEARQVLAKAL 1594

Query: 1696 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL---- 1751
              LP+  HI+ + + A LE+  G  ++ RS+FEG++++ PKR DLW++Y+DQEI+     
Sbjct: 1595 QVLPKRDHIEVVRKFAQLEYAKGDIEQARSLFEGLIADAPKRIDLWNVYIDQEIKCGGGG 1654

Query: 1752 GDVD---------------LIRGLFERAI-SLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1795
            GDVD                +  LFER I +  +  K+ KF F K+LEYE+S G+++ + 
Sbjct: 1655 GDVDEDKEKNKSKTASNKQQVESLFERVIENKKVSRKQAKFFFNKWLEYEESQGDDKMVG 1714

Query: 1796 YVKQKAMEYV 1805
             VK KA+EYV
Sbjct: 1715 KVKAKAIEYV 1724



 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 177/681 (25%), Positives = 318/681 (46%), Gaps = 38/681 (5%)

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
           L +IF VG  +   V++ +       K++I +S+   L    L  E +  G +++  VKS
Sbjct: 180 LKSIFRVGSWLKAKVVETESS----NKKRIEVSIEPELANANLEKEDLVPGNIVSCSVKS 235

Query: 118 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDV---KPGLLLQGVVRSIDRTRKVVYLSSD 174
           IEDHG IL  G+  F+ F+    L +N+ ID+   K GL+L   + S    R +    + 
Sbjct: 236 IEDHGLILDCGIEGFSAFVSNKEL-KNAEIDLETCKEGLVLTTTIVSKPSGRVITVKPAI 294

Query: 175 PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 234
             T +K +T      S+D +  G +V   V  + + G+M        GT++   LQ  F 
Sbjct: 295 ASTTAKKLTPITTISSVDAIQVGSVVEALVSDVTDAGIMTRVYGLVDGTLNFSDLQ-IFS 353

Query: 235 TTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLLHNRAPPSHVK------VGDIY 286
           T   K+ +     +  R++ +      R + L+L  + L      S  +      VG ++
Sbjct: 354 TQELKHKFAIGSNIKTRVVAILQKGGVRKLVLSLVSHSLQMGNESSKTEALEAFPVGHVF 413

Query: 287 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 346
           D ++V+  D+   + + + S   ST   +  S++ E    K    Y   S  + R++GF 
Sbjct: 414 DDAEVLGSDQEY-VYVKLGS---STLGQIHNSNIDES---KTLIDYSVTSKHKARVIGFN 466

Query: 347 HLEGLATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAV--DSFGAIVQFPGGVKALCPL 403
            ++ L     K +  + L  T  D+    ++   ++I V  DS G  V+F    +   P 
Sbjct: 467 MIDNLYVLTFKPTVIDALYLTVKDIPVVTLLPSCEIIKVLPDSGGIQVKFLEEFQGFVPP 526

Query: 404 PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRL 462
            HMS+ ++V P +KF+VG+++  R+L  K K   VT +K+LV      ILSS+ +A    
Sbjct: 527 NHMSDIKLVYPERKFRVGSKVKGRLLAHKGKTPLVTLRKSLVNLEDDEILSSFDDAKVGS 586

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
            T+  + K    G  V F+  ++ F P++E+      + S    +GQVV  +I+      
Sbjct: 587 KTNAIVEKFVHGGVLVSFFGSLRAFLPKTEISETFVDDASKYLKLGQVVNVKILDINEEQ 646

Query: 523 RRINLSFMMKPTRVSEDDLVKLGSLVSGV-----VDVVTPNAVVVYVIAKGYSKGTIPTE 577
           +R+ ++ + + +++S     ++ +L+ G+     V V   N  V+  +     +G +   
Sbjct: 647 KRLVVT-LKQSSQLSASQKTEIANLIPGISVVHAVVVEKKNDSVLIELEGSNLRGVVHDG 705

Query: 578 HLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQ--QLPSDASH 633
            L+D + E    +   ++   + + L++  D ++  ++ +AK SLI +++  QLP+D   
Sbjct: 706 QLSDGNYEQNRALFKKLEISSKVEVLILEKDLKARTVIATAKKSLIEASKKKQLPTDFDD 765

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           + PN ++ GYV ++   G FV F GRLTG             DLSK +Y  QS+   +L 
Sbjct: 766 VQPNRIIKGYVKSVTNLGLFVAFTGRLTGLILAKYVSKSAHEDLSKRFYKYQSLTCKVLS 825

Query: 694 VNSETGRITLSLKQSCCSSTD 714
           V+SE  R  L++     S  D
Sbjct: 826 VDSENKRFLLTIANGKDSDGD 846



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 166/384 (43%), Gaps = 45/384 (11%)

Query: 941  LVQAEITEIKPLE--LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
            L   EI ++ P    +++KF   F G +    ++D K    E     F++G  V  R++A
Sbjct: 497  LPSCEIIKVLPDSGGIQVKFLEEFQGFVPPNHMSDIKLVYPER---KFRVGSKVKGRLLA 553

Query: 999  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1058
               K  +       ++++ S++ + +   ++L    D  +G +    V K  +   L++ 
Sbjct: 554  HKGKTPL-------VTLRKSLVNLED--DEILSSFDDAKVGSKTNAIVEKFVHGGVLVSF 604

Query: 1059 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1118
               L+A  F+  +    + + +  +   +G+ V   +L IN+E+K L + L+      + 
Sbjct: 605  FGSLRA--FLPKTEISETFVDDASKYLKLGQVVNVKILDINEEQKRLVVTLKQSSQLSAS 662

Query: 1119 KTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1178
            +  +I+N      +    +V  +   +L      +   G +L G VH  +L     SD  
Sbjct: 663  QKTEIANLIPGISVVHAVVVEKKNDSVL------IELEGSNLRGVVHDGQL-----SDGN 711

Query: 1179 SGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1238
               +   F  L         K +VL + + ++    +  + +S ++   ++    L TD 
Sbjct: 712  YEQNRALFKKLEISS-----KVEVLILEKDLKARTVIATAKKSLIE---ASKKKQLPTDF 763

Query: 1239 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1298
            D          D+ PN I++GYVK+VT+ G F+  + +L   +L   +S    E   K F
Sbjct: 764  D----------DVQPNRIIKGYVKSVTNLGLFVAFTGRLTGLILAKYVSKSAHEDLSKRF 813

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTL 1322
               + +  +VLSV+  +KR  +T+
Sbjct: 814  YKYQSLTCKVLSVDSENKRFLLTI 837


>gi|50303899|ref|XP_451897.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641029|emb|CAH02290.1| KLLA0B08239p [Kluyveromyces lactis]
          Length = 1729

 Score =  385 bits (988), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 357/1212 (29%), Positives = 581/1212 (47%), Gaps = 153/1212 (12%)

Query: 651  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710
            GC + F   +  F P  +  +       +   +GQSV   IL+ + E  RI  S K S  
Sbjct: 607  GCVISFFNNIKAFVPNKEISEAFVKKPQEHLRLGQSVLVKILNHDFERNRIIASCKISAE 666

Query: 711  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 768
            SS+      E  ++ + I               ++  +I    +  + ES D G+  V+ 
Sbjct: 667  SSSKQKSAIESLVVGKSI---------------IDAIVIEKTKDSVIVESKDSGLRGVIY 711

Query: 769  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 828
                SD    I  ++ +   ++  S ++  +LD      + ++S K   I    +     
Sbjct: 712  TGHLSD--DRIEQNRASQKKLKINSEVRGLVLDKDIRTHVFNMSCKKSLIKDAEDGTLPL 769

Query: 829  QAQKKKRKREASKDLGVHQTVNAIVEIVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFP 886
                 K K +     G  ++V+     V  N  ++ L LP Y      A   D +  K  
Sbjct: 770  SFSDIKNKDKTEPMHGYVKSVSDRGVFVAFNGKFVGLVLPSY-----AAETRDIDIHK-- 822

Query: 887  QKQFLNGQSVIATVMALPSSSTAGRLLL-LLKAISETETSSS-------KRAKKKSSYDV 938
             K ++N QSV  TV  L +     R LL +LK  ++ +  +S       K  K  S + +
Sbjct: 823  -KYYIN-QSV--TVYLLRTDEEHERFLLTILKQKTDVKKINSSVINPVDKSIKDLSDFTI 878

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 996
            G + +A IT +K  +L +      HGRI I+EV D   ++ E     S +K   +++ R+
Sbjct: 879  GKVTKATITSVKKNQLNVTLADNVHGRISISEVFDSFEDIKEQKAPLSVYKKNDSLSVRV 938

Query: 997  IA----KSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1047
            I     KS K         KS L ELS KPS LT S +  K L    D +  Q   G++ 
Sbjct: 939  IGFHDIKSRKFLPISHTTSKSHLVELSAKPSSLT-SPVSEKKL---KDFTPEQTTFGFIN 994

Query: 1048 KVDNEWALLTISRHLKAQLFILDSAYEPSELQ-EFQRRFHIGKAVTGHVLSINKEKKLLR 1106
               N+ A LTI+  +KA+L I + + E  +     + ++ IG AV   V SI+ E   L 
Sbjct: 995  NYSNDTAWLTITPTVKAKLPIFEISDEGHDFSLPIEEKYPIGTAVRVTVKSIDTEHDSLV 1054

Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1166
            +  R      S     IS       I EGD++  R+  +      +++ +G  + G V F
Sbjct: 1055 VSAR------SHAISSISE------IKEGDVLPARVISVQDTY--VLLSLGKDVTG-VSF 1099

Query: 1167 TELKNICVSDPLSGYDEGQFDPLSGYDEGQ--FVKCKVLEISRTVRGTFHVELSLRSSLD 1224
                   ++D L  Y     D    YD  +   V   VL +         + LSLRSS  
Sbjct: 1100 -------ITDALDDYSLSLKDV---YDSKKKNIVSATVLNVDI---DNNKINLSLRSS-- 1144

Query: 1225 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1284
              S  + + +S+             +L    IV+G+VK++T KG FI LS  L A V +S
Sbjct: 1145 --SPKDRTIISS------------SELKRGDIVRGFVKSITDKGVFISLSSVLQAFVPVS 1190

Query: 1285 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1344
             L+D +++  +K F  G+ V G+V++ +    RV +TL+ S+      + + + S+++VG
Sbjct: 1191 KLTDAFIKDWKKFFRRGQSVVGKVVNCDN-DDRVLLTLRESEVN-GQLNVLKSYSDINVG 1248

Query: 1345 DIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1403
            DI  G +K V  +G+F+ ++ T N+ GL H SE+++  +DN++ ++  G+KVK  +LK +
Sbjct: 1249 DIFQGSVKNVTDFGVFVKLDGTVNVTGLAHKSEVADAKIDNLQNLFGEGDKVKAIVLKTN 1308

Query: 1404 KEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES 1463
             EK++ISLG+K+SYF N                 E+  +    +  E     V D+D++ 
Sbjct: 1309 PEKKQISLGLKASYFTN-----------------EKPETVEEGNEEEEELEGVDDLDIDM 1351

Query: 1464 EDGGSLVLAQIESRASVPPLEVNLDDEQ------------------PDMDNGISQNQGHT 1505
            EDG     A  +        +  +DD Q                  P   +G+S + G  
Sbjct: 1352 EDGQKESDASDKDEDKDEDQDEIMDDAQFGHSDSEAEDTTRPKNSAPVSTDGLSLSTGFD 1411

Query: 1506 DEAKTIDEKNNRHAKKKEKEE-------REQEIRAAEERLLEKDA--PRTPDEFERLVRS 1556
              A  +D+  +     +E E+       ++++ +  +++ ++ +   P +  +FERL+  
Sbjct: 1412 WTASILDQAQDEEESSEEDEDFIKSRKQKKKKTQIVQDKTVDINTRIPESVGDFERLIMG 1471

Query: 1557 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1616
            +PNSS VW+ YMAF L +++VEKAR I ERAL+TIN REE+EKLNIW+A  NLEN +G  
Sbjct: 1472 NPNSSVVWMNYMAFHLQLSEVEKAREIVERALKTINFREESEKLNIWIASLNLENTFGT- 1530

Query: 1617 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRR 1675
             EE V  VF +A QY D   +H+ LL +Y+ +E+ + A EL     KKF      +W+  
Sbjct: 1531 -EETVEDVFTKACQYMDSFTMHMKLLSIYQMSEKIEKAKELFKITAKKFGSEKVSIWVAW 1589

Query: 1676 VQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1734
             + L+     +    V+  +L SLP   HI+ + + A LEF  G  ++GRS+FEG+L++ 
Sbjct: 1590 GEFLIDNNLIDEAHEVLGNSLKSLPTRNHIEVVRKFAQLEFSKGDPEQGRSLFEGLLADA 1649

Query: 1735 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1794
            PKR DLW++Y+DQEI+ G+      LFER I+  +  K+ KF F K+L++E+   +++ +
Sbjct: 1650 PKRVDLWNVYIDQEIKHGEKSKAEDLFERVITKKITRKQAKFFFNKWLQFEEQKDDQKLV 1709

Query: 1795 EYVKQKAMEYVE 1806
            +YVK KA EYV+
Sbjct: 1710 DYVKAKAAEYVK 1721



 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 204/767 (26%), Positives = 350/767 (45%), Gaps = 90/767 (11%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPILDNEIEAN 53
           + ++ G  + G +  +++ +L I L  GL G          + +  + LD  ++++ E N
Sbjct: 112 KQMTKGTIVLGQIQSISKHELKISLVDGLHGYVSLTDISEQMTKILENLDESMESDDEKN 171

Query: 54  EDNL---------------LPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSL 95
           ED+                LP +   F +GQ + C+V Q +   +    +K+ LS+  S+
Sbjct: 172 EDSEYDSSDDESDITTPKELPDLNKYFKIGQWLRCMV-QNNSALESNKNKKLDLSIEPSV 230

Query: 96  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLL 155
           +      + + +   L   +KSIEDHG IL  G+ + TGF+ + ++ E S +   PG++ 
Sbjct: 231 V-NVFEDDDLAKNCPLQCSLKSIEDHGAILDIGIENLTGFISKKDIPEFSSL--LPGMVF 287

Query: 156 QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 215
              V    R+ + V ++ D   ++   TK  K  SID +VPG  +    Q+I  +GV+  
Sbjct: 288 LATVTK--RSGRTVNVNLD---LASKNTKVEKISSIDAIVPGQSIDFLPQTITNHGVIGK 342

Query: 216 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL---FVDPTSRAVGLTLNPYL-- 270
                T  + + H  N F   + K+ Y+    VNARIL    V    +   ++  P++  
Sbjct: 343 AFGLITAFLPLPH-SNFFTVEDLKHHYSIGDLVNARILATTIVKSGDKVAVVSTQPHIIS 401

Query: 271 LHNRAPPSHV----KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD--VAEEE 324
           LH +   +       VG I+D   V   D              S   YV+I++  V +  
Sbjct: 402 LHPKLQETEALESFPVGYIFDSCTVKGRD--------------SQFFYVSINNEQVGQIH 447

Query: 325 VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIA 383
           + K  +    G+ V+ RILG+ +++ L T     +  +      SD+  G V+   +++ 
Sbjct: 448 LSKAGETEPTGT-VKARILGYNNVDKLYTLTSDPALLDVKYLRSSDIPAGEVLSACEIVT 506

Query: 384 VDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS-KRITVTHK 441
           V   G  ++ F    KA  P  H+S+  +V P +KFK+G+++  RVL V S  R+TVT K
Sbjct: 507 VSGKGIELKIFNDQFKAFVPPLHISDTRLVYPERKFKIGSKVKGRVLNVDSVGRVTVTLK 566

Query: 442 KTLVKSKLAILSSYAEATD-------RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 494
           K++V +    ++   +  D        L T G +   + +GC + F+N ++ F P  E+ 
Sbjct: 567 KSIVNADEESVTLVCKNDDIQTVESQELKTIGTVEIFKPNGCVISFFNNIKAFVPNKEIS 626

Query: 495 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVS 549
                +P     +GQ V  +I++      RI  S  +     S+     + LV   S++ 
Sbjct: 627 EAFVKKPQEHLRLGQSVLVKILNHDFERNRIIASCKISAESSSKQKSAIESLVVGKSIID 686

Query: 550 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE 608
            +V   T ++V+V     G  +G I T HL+D  +E     +  +K   E  + LVLD +
Sbjct: 687 AIVIEKTKDSVIVESKDSGL-RGVIYTGHLSDDRIEQNRASQKKLKINSEV-RGLVLDKD 744

Query: 609 --SSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
             +    +S K SLI  A+   LP   SD  +      +HGYV ++ + G FV F G+  
Sbjct: 745 IRTHVFNMSCKKSLIKDAEDGTLPLSFSDIKNKDKTEPMHGYVKSVSDRGVFVAFNGKFV 804

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS-LKQ 707
           G    S A + +  D+ K YY+ QSV   +L  + E  R  L+ LKQ
Sbjct: 805 GLVLPSYAAETRDIDIHKKYYINQSVTVYLLRTDEEHERFLLTILKQ 851



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 36/196 (18%)

Query: 631  ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 690
            +S +    +V G+V +I + G F+     L  F P SK  D    D  K +  GQSV   
Sbjct: 1154 SSELKRGDIVRGFVKSITDKGVFISLSSVLQAFVPVSKLTDAFIKDWKKFFRRGQSVVGK 1213

Query: 691  ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG--SELKWVEGFI 748
            +++ +++  R+ L+L++S                            NG  + LK      
Sbjct: 1214 VVNCDND-DRVLLTLRESEV--------------------------NGQLNVLKSYSDIN 1246

Query: 749  IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 801
            +G + +G V    DFGV V  +   +V G     ++A A +++       G  ++A +L 
Sbjct: 1247 VGDIFQGSVKNVTDFGVFVKLDGTVNVTGLAHKSEVADAKIDNLQNLFGEGDKVKAIVLK 1306

Query: 802  VAKAERLVDLSLKTVF 817
                ++ + L LK  +
Sbjct: 1307 TNPEKKQISLGLKASY 1322



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 365  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
            + + S++K G +V+G V ++   G  +     ++A  P+  +++  I    K F+ G  +
Sbjct: 1151 IISSSELKRGDIVRGFVKSITDKGVFISLSSVLQAFVPVSKLTDAFIKDWKKFFRRGQSV 1210

Query: 425  VFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 482
            V +V+   +  R+ +T +++ V  +L +L SY++     I  G +  +   G FV+    
Sbjct: 1211 VGKVVNCDNDDRVLLTLRESEVNGQLNVLKSYSDINVGDIFQGSVKNVTDFGVFVKLDGT 1270

Query: 483  -GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
              V G A +SE+         +++  G  VK  ++ + P  ++I+L
Sbjct: 1271 VNVTGLAHKSEVADAKIDNLQNLFGEGDKVKAIVLKTNPEKKQISL 1316



 Score = 49.3 bits (116), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 19/270 (7%)

Query: 101  SLETVQEGMVLTAYVKSIEDHGYILHF-----GLPSFTGFLPRNNLAENSGIDVKPGLLL 155
            S+  ++EG VL A V S++D   +L       G+   T  L   +L+     D K   ++
Sbjct: 1064 SISEIKEGDVLPARVISVQDTYVLLSLGKDVTGVSFITDALDDYSLSLKDVYDSKKKNIV 1123

Query: 156  QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 215
               V ++D     + LS     +     KD   IS   L  G +V   V+SI + GV +S
Sbjct: 1124 SATVLNVDIDNNKINLS-----LRSSSPKDRTIISSSELKRGDIVRGFVKSITDKGVFIS 1178

Query: 216  FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR- 274
              +     V +  L + F   +WK  + + + V  +++  D   R + LTL    ++ + 
Sbjct: 1179 LSSVLQAFVPVSKLTDAF-IKDWKKFFRRGQSVVGKVVNCDNDDRVL-LTLRESEVNGQL 1236

Query: 275  ---APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 331
                  S + VGDI+  S     D G+ + LD     V+       S+VA+ ++  L+  
Sbjct: 1237 NVLKSYSDINVGDIFQGSVKNVTDFGVFVKLD---GTVNVTGLAHKSEVADAKIDNLQNL 1293

Query: 332  YKEGSCVRVRILGFRHLEGLATGILKASAF 361
            + EG  V+  +L     +   +  LKAS F
Sbjct: 1294 FGEGDKVKAIVLKTNPEKKQISLGLKASYF 1323



 Score = 47.8 bits (112), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 132/303 (43%), Gaps = 30/303 (9%)

Query: 1135 GDIVGGRI---SKILSGVGGLVVQIGPH---LYGRVHFTE------LKNICVSDPLSGYD 1182
            GD+V  RI   + + SG    VV   PH   L+ ++  TE      +  I  S  + G D
Sbjct: 371  GDLVNARILATTIVKSGDKVAVVSTQPHIISLHPKLQETEALESFPVGYIFDSCTVKGRD 430

Query: 1183 EGQFDPLSGYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1240
              QF  +S  +E  GQ    K  E   T  GT    +   +++D + +  S     DV  
Sbjct: 431  -SQFFYVSINNEQVGQIHLSKAGETEPT--GTVKARILGYNNVDKLYTLTSDPALLDV-- 485

Query: 1241 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFP 1299
              K+L   +  +  ++    +  V+ KG  + + + +  A V   ++SD  +  PE++F 
Sbjct: 486  --KYLRSSDIPAGEVLSACEIVTVSGKGIELKIFNDQFKAFVPPLHISDTRLVYPERKFK 543

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI------VIGQIKR 1353
            IG  V GRVL+V+ +  RV VTLK S      +S      N  +  +       IG ++ 
Sbjct: 544  IGSKVKGRVLNVDSVG-RVTVTLKKSIVNADEESVTLVCKNDDIQTVESQELKTIGTVEI 602

Query: 1354 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
             +  G  I+  N N+       E+SE  V   +   R G+ V VKIL  D E+ RI    
Sbjct: 603  FKPNGCVISFFN-NIKAFVPNKEISEAFVKKPQEHLRLGQSVLVKILNHDFERNRIIASC 661

Query: 1414 KSS 1416
            K S
Sbjct: 662  KIS 664



 Score = 40.4 bits (93), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 92/425 (21%), Positives = 169/425 (39%), Gaps = 57/425 (13%)

Query: 111  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDV-KPGLLLQGVVRSIDRTRK-- 167
            +  YVKS+ D G  + F    F G +  +  AE   ID+ K   + Q V   + RT +  
Sbjct: 783  MHGYVKSVSDRGVFVAFN-GKFVGLVLPSYAAETRDIDIHKKYYINQSVTVYLLRTDEEH 841

Query: 168  ----VVYLSSDPD------TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
                +  L    D      +V   V K +K +S D  + G +    + S+ +N + ++  
Sbjct: 842  ERFLLTILKQKTDVKKINSSVINPVDKSIKDLS-DFTI-GKVTKATITSVKKNQLNVTLA 899

Query: 218  TYFTGTVDIFHLQNTFPTTNWKND----YNQHKKVNARIL-FVDPTSRA----------- 261
                G + I  + ++F     +      Y ++  ++ R++ F D  SR            
Sbjct: 900  DNVHGRISISEVFDSFEDIKEQKAPLSVYKKNDSLSVRVIGFHDIKSRKFLPISHTTSKS 959

Query: 262  --VGLTLNPYLLHNRAPPSHVKVGDIYDQSK----VVRVDRGLGLLLDIPSTPVSTPAYV 315
              V L+  P  L   +P S  K+ D   +      +         L   P+     P + 
Sbjct: 960  HLVELSAKPSSL--TSPVSEKKLKDFTPEQTTFGFINNYSNDTAWLTITPTVKAKLPIF- 1016

Query: 316  TISDVAEEEVRKLEKKYKEGSCVRVRI--LGFRHLEGLATGILKASAFEGLVFTHSDVKP 373
             ISD   +    +E+KY  G+ VRV +  +   H        L  SA    + + S++K 
Sbjct: 1017 EISDEGHDFSLPIEEKYPIGTAVRVTVKSIDTEH------DSLVVSARSHAISSISEIKE 1070

Query: 374  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH-MSEFEI----VKPGKKFKVGAELVFRV 428
            G V+  +VI+V     ++     V  +  +   + ++ +    V   KK  + +  V  V
Sbjct: 1071 GDVLPARVISVQDTYVLLSLGKDVTGVSFITDALDDYSLSLKDVYDSKKKNIVSATVLNV 1130

Query: 429  LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
              + + +I ++ + +  K +  I SS  +  D  I  G++  I   G F+   + +Q F 
Sbjct: 1131 -DIDNNKINLSLRSSSPKDRTIISSSELKRGD--IVRGFVKSITDKGVFISLSSVLQAFV 1187

Query: 489  PRSEL 493
            P S+L
Sbjct: 1188 PVSKL 1192


>gi|392597567|gb|EIW86889.1| hypothetical protein CONPUDRAFT_115715 [Coniophora puteana RWD-64-598
            SS2]
          Length = 1457

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 359/1245 (28%), Positives = 590/1245 (47%), Gaps = 179/1245 (14%)

Query: 629  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 688
            ++ S I P ++V   +  I   G  V+ LG   G       VD         + VGQ V+
Sbjct: 325  TNVSSILPGTLVQSLITAISPEGINVQVLGFFDG------TVDDAHLPSGTKFKVGQKVK 378

Query: 689  SNILDV--NSETGRITLSLKQSCCS--STDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
              +L     S   ++ L+L     S  S DA   Q           LQSS        + 
Sbjct: 379  CRVLYAIPASSPPKLVLALSDHIISLVSQDAENEQ-----------LQSS--------YP 419

Query: 745  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSV 794
             G I+  V   KV       V V       + GFI   Q A   V S          G++
Sbjct: 420  IGTILDDVKVAKVEGERGLTVAV----QPGLAGFIHISQTADDRVPSLSASSGPWRCGTL 475

Query: 795  IQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 853
             +A ++     +R++ LS K +V   +F +A                 D+ V + +   V
Sbjct: 476  HRARVIGHHIFDRVLQLSSKPSVLEQKFVQAG----------------DIAVGEVMKGSV 519

Query: 854  EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLL 913
            + + E  L +S+      + + +       K P K+F  G SV   V+ +       R++
Sbjct: 520  KKLTETALFISISGNADGVIWPNHYADIALKHPSKRFKPGGSVKCRVLTVDPERK--RVV 577

Query: 914  LLLKAI---SETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
            L  K     SE    SS    K     VG +V A + ++    L+L+F       + + E
Sbjct: 578  LTAKKTLVDSELPIISSFEDAK-----VGMVVHAVVFKVFEKGLQLEFFNNVKAFVPVRE 632

Query: 971  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1030
             ++    + +     F +G+ V  RII      D   S +        + +V +  S   
Sbjct: 633  ASEGTGTLTDA----FPVGKVVKVRII----NIDTDTSRI--------VASVRQAASSFK 676

Query: 1031 FEECDVS---IGQRVTGYV---YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR 1084
                DVS   +G  V+G +   +K++   +L  I       L  L S+   + + + +  
Sbjct: 677  ATAGDVSQVEVGNEVSGTIAELHKLNAVVSLKPIDVRALVSLKNLASSRN-TTVAQLKGT 735

Query: 1085 FHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1143
              IG  V   V+ S N EK  +    +P     S K   +S   M+T +  G +VGGR+ 
Sbjct: 736  VAIGDEVHELVIVSRNSEKGFVIAACKPKSKTASHKIGPLS---MET-VAPGQVVGGRV- 790

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
             +  G+ G +V++ P + G +H T        D    Y+ G   P    D    +K  V+
Sbjct: 791  -LRQGLRGAIVKLTPKISGFLHPT--------DSCDNYETGT--PFPPKD--SVLKATVI 837

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
            E+ +       ++LS+R S        S D+S+ VD   + +   ED+     ++G+VK+
Sbjct: 838  EVDKE---NNQLDLSMRPS------RLSGDVSSVVD---REINSFEDIKRGDTLRGFVKS 885

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            V   G F+ML R +DA+V +  L D YV+  +  F   +LV GR+LSV+P +K+VE+T +
Sbjct: 886  VADHGLFVMLGRHVDARVQIKELFDEYVKDWKPRFKANQLVKGRILSVDPENKKVEMTFR 945

Query: 1324 TSD-SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH- 1381
            + D +R A+      L++LH G  V G+IKR+E+YGLFI +E + + GLCH SELS++  
Sbjct: 946  SGDLNRNATNGL--TLNDLHEGQKVKGRIKRIEAYGLFIEVEGSKISGLCHKSELSDNKD 1003

Query: 1382 --VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEE 1439
              VD     +R G+ V+  I  +D  KR+IS G+K SYF         S+E+  DE+   
Sbjct: 1004 ADVDVALRTFREGDTVQAMIKSIDVSKRKISFGLKPSYF---------SAEDVDDESGAS 1054

Query: 1440 VGSYNRSSLL------ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD 1493
             G+ +  +L       +   V  +D   E  DG     A  E  +     ++++D   P 
Sbjct: 1055 DGAADSPALGVVEQDDDEQMVDPEDAGPEDSDGNEEDGAGEEEDSESEGDQMDIDLAPP- 1113

Query: 1494 MDNGISQNQGHTDE-------------------AKTIDEKNNRHAKKKEKEEREQEIRAA 1534
                ISQN G   +                   A  +D++++           E++ +  
Sbjct: 1114 ---SISQNVGRNAQPVPSASLKLDGFNWFNGANANGVDDESSNSEDSDSDGGEERKKKRK 1170

Query: 1535 EERLLEKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1586
            +++++++D        AP +  +FERL+  SPNSS++WI+YM+F L +++VEKAR IA R
Sbjct: 1171 KKQVIQQDLTAEMHTKAPESNADFERLLLGSPNSSYLWIQYMSFQLKLSEVEKAREIARR 1230

Query: 1587 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1646
            A++TI  REE EKLN+ +A  NLEN YG   +E++   F+ A +  D K VHL L  +++
Sbjct: 1231 AIETIGFREEQEKLNVCIALLNLENTYGT--DESLENAFKDAARRNDSKTVHLQLASIFD 1288

Query: 1647 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIK 1705
            ++E+++ A+E   +  KKF  S KVW    +  LK+ + E  + ++ R+L SL + KH+K
Sbjct: 1289 QSEKHEKAEEQYKRTCKKFGQSSKVWSLFCEYYLKRGEVEQARKLLPRSLQSLEKRKHLK 1348

Query: 1706 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765
             IS+ A LE+K G  +RG++++EGI+  +PKR DLWS+Y+D E    ++  +R +FER +
Sbjct: 1349 TISKFAQLEYKLGDPERGKTIYEGIVDSHPKRWDLWSVYMDMEAGQQNIQSLRNIFERVL 1408

Query: 1766 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            +  +  +K K+ FKK+L+YE+  G+EE  + VK KA+E+ ++ L 
Sbjct: 1409 THKMTSRKAKYFFKKWLDYERRFGDEEGADNVKSKAVEWTQAALG 1453



 Score =  166 bits (420), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 191/763 (25%), Positives = 332/763 (43%), Gaps = 87/763 (11%)

Query: 58  LPTIFHVGQLVSCIVL--------------QLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 103
           L  +F+ GQ V  +V               ++ DD  +  KR + LSL    +  G+   
Sbjct: 181 LHDLFYPGQFVRAVVTNVYAPGVSEVSGLGRVRDDIAKASKR-VELSLVPEDVNAGVQKS 239

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVVR 160
            +Q G  LTA VKS+EDHGY+L  G+P  +GF+   +  +    D K    GLL   V++
Sbjct: 240 DLQLGFTLTAAVKSVEDHGYLLDLGVPDVSGFMSFQDAQKGRFGDKKLPIGGLLDVAVLK 299

Query: 161 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
                R    +S D    +     ++  +S   ++PG +V + + +I   G+ +  L +F
Sbjct: 300 KSGNGR-TCTVSLDAQLFATSSLSEVTNVSS--ILPGTLVQSLITAISPEGINVQVLGFF 356

Query: 221 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL------- 271
            GTVD  HL +          +   +KV  R+L+  P S    + L L+ +++       
Sbjct: 357 DGTVDDAHLPSG-------TKFKVGQKVKCRVLYAIPASSPPKLVLALSDHIISLVSQDA 409

Query: 272 HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 331
            N    S   +G I D  KV +V+   GL + +         ++ IS  A++ V  L   
Sbjct: 410 ENEQLQSSYPIGTILDDVKVAKVEGERGLTVAVQP---GLAGFIHISQTADDRVPSLSAS 466

Query: 332 ---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 388
              ++ G+  R R++G    + +     K S  E       D+  G V+KG V  +    
Sbjct: 467 SGPWRCGTLHRARVIGHHIFDRVLQLSSKPSVLEQKFVQAGDIAVGEVMKGSVKKLTETA 526

Query: 389 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 446
             +   G    +    H ++  +  P K+FK G  +  RVL V  + KR+ +T KKTLV 
Sbjct: 527 LFISISGNADGVIWPNHYADIALKHPSKRFKPGGSVKCRVLTVDPERKRVVLTAKKTLVD 586

Query: 447 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 506
           S+L I+SS+ +A   ++ H  + K+ + G  + F+N V+ F P  E     G   +  + 
Sbjct: 587 SELPIISSFEDAKVGMVVHAVVFKVFEKGLQLEFFNNVKAFVPVREASEGTGTL-TDAFP 645

Query: 507 VGQVVKCRIM------SSIPAS-RRINLSFMMKPTRVSEDDLVKLGSLVSG-VVDVVTPN 558
           VG+VVK RI+      S I AS R+   SF      VS+   V++G+ VSG + ++   N
Sbjct: 646 VGKVVKVRIINIDTDTSRIVASVRQAASSFKATAGDVSQ---VEVGNEVSGTIAELHKLN 702

Query: 559 AVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVL--DNESSNLLL 614
           AVV   +     +  +  ++LA    + TV  +K  +  G E  +L+++  ++E   ++ 
Sbjct: 703 AVV--SLKPIDVRALVSLKNLASS-RNTTVAQLKGTVAIGDEVHELVIVSRNSEKGFVIA 759

Query: 615 SAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 673
           + K     ++ ++ P     + P  VV G V      G  V+   +++GF   + + D  
Sbjct: 760 ACKPKSKTASHKIGPLSMETVAPGQVVGGRVLRQGLRGAIVKLTPKISGFLHPTDSCDNY 819

Query: 674 RADLSKTYYVGQSV-RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 732
             +    +    SV ++ +++V+ E  ++ LS++ S  S   +S +              
Sbjct: 820 --ETGTPFPPKDSVLKATVIEVDKENNQLDLSMRPSRLSGDVSSVVDR------------ 865

Query: 733 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
                  E+   E    G  + G V    D G+ V    H D 
Sbjct: 866 -------EINSFEDIKRGDTLRGFVKSVADHGLFVMLGRHVDA 901



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 118/252 (46%), Gaps = 12/252 (4%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVKP-GLLLQ 156
            LS+ETV  G V+   V      G I+    P  +GFL   +  +N  +G    P   +L+
Sbjct: 775  LSMETVAPGQVVGGRVLRQGLRGAIVKL-TPKISGFLHPTDSCDNYETGTPFPPKDSVLK 833

Query: 157  GVVRSIDRTRKVVYLSSDPDTVSKCVTK--DLKGISIDLLVPGMMVSTRVQSILENGVML 214
              V  +D+    + LS  P  +S  V+   D +  S + +  G  +   V+S+ ++G+ +
Sbjct: 834  ATVIEVDKENNQLDLSMRPSRLSGDVSSVVDREINSFEDIKRGDTLRGFVKSVADHGLFV 893

Query: 215  SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 274
                +    V I  L + +   +WK  +  ++ V  RIL VDP ++ V +T     L NR
Sbjct: 894  MLGRHVDARVQIKELFDEY-VKDWKPRFKANQLVKGRILSVDPENKKVEMTFRSGDL-NR 951

Query: 275  APPSHVKVGDIYDQSKVV-RVDR--GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEK 330
               + + + D+++  KV  R+ R    GL +++  + +S   + + +SD  + +V    +
Sbjct: 952  NATNGLTLNDLHEGQKVKGRIKRIEAYGLFIEVEGSKISGLCHKSELSDNKDADVDVALR 1011

Query: 331  KYKEGSCVRVRI 342
             ++EG  V+  I
Sbjct: 1012 TFREGDTVQAMI 1023



 Score = 42.0 bits (97), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 16/140 (11%)

Query: 62   FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK----GLSLETVQEGMVLTAYVKS 117
            F   QLV   +L +D + K     K+ ++ R   L +    GL+L  + EG  +   +K 
Sbjct: 920  FKANQLVKGRILSVDPENK-----KVEMTFRSGDLNRNATNGLTLNDLHEGQKVKGRIKR 974

Query: 118  IEDHGYILHFGLPSFTGFLPRNNLAENSGIDV-------KPGLLLQGVVRSIDRTRKVVY 170
            IE +G  +       +G   ++ L++N   DV       + G  +Q +++SID +++ + 
Sbjct: 975  IEAYGLFIEVEGSKISGLCHKSELSDNKDADVDVALRTFREGDTVQAMIKSIDVSKRKIS 1034

Query: 171  LSSDPDTVSKCVTKDLKGIS 190
                P   S     D  G S
Sbjct: 1035 FGLKPSYFSAEDVDDESGAS 1054


>gi|449550992|gb|EMD41956.1| hypothetical protein CERSUDRAFT_147388 [Ceriporiopsis subvermispora
            B]
          Length = 1482

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 296/958 (30%), Positives = 486/958 (50%), Gaps = 90/958 (9%)

Query: 884  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 943
            K PQK+F  G S+   ++ +  +    R  + L A      S+    +K     VG +  
Sbjct: 573  KHPQKRFKPGASIKCRILVVDPA----RKRIALTAKKTLLDSTLPIIRKFEDAQVGLVTH 628

Query: 944  AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 1003
            A + +     L+++F  G    + + E ++   + V +L   F +G+ VT RII      
Sbjct: 629  AVVFKTTDKILQVEFYNGLKAVVPLREASE---SAVTSLPEAFPVGKPVTVRIITV---- 681

Query: 1004 DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1063
            D + S      I  S+   S      + +   V IG  V G +  V  +  +LT+     
Sbjct: 682  DTETS-----RITASIRQASPTYKSAVTDISGVEIGNTVEGTISDVRKDQIVLTLQPTQV 736

Query: 1064 AQLFILDSAYEPSELQ--EFQRRFHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKT 1120
              L  L++      +   + + R  IG  +   V+ S N EK  + +   P      DK 
Sbjct: 737  TALLSLNNLANRRNVSVAQLRTRLKIGDKLQELVVVSRNPEKGFVLVASSP-----KDKV 791

Query: 1121 VDISNDNMQ-TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
              +  +++    I  G +VGGR+ + +    G +V++   + G +H T        D   
Sbjct: 792  ALVPKNSLSLDTIQVGQLVGGRVLRHVRQ--GALVKLTQSISGVLHPT--------DTCD 841

Query: 1180 GYDEGQ-FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1238
             Y+ G  F P+        +K  V+ + +  R    + LS RSS    +  N   L+   
Sbjct: 842  DYESGTPFPPVDS-----IIKAVVIAVDKEKR---QLTLSTRSSR--FNPDNRKALAD-- 889

Query: 1239 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1298
                + L  ++ LSP   V+G++K+V   G F+ML R +DA+V +  L D +V+  +  F
Sbjct: 890  ----RELVGLDALSPGDSVRGFIKSVAEHGLFVMLGRNIDARVQIKELFDEFVKDWKSRF 945

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
             + +LV GR++SV+   K+VE++ ++ D  T S S    L++L  G  + G++KRVE YG
Sbjct: 946  TVNQLVKGRIVSVDREKKQVEMSFRSGDI-TKSASTKLTLADLSEGQKINGRVKRVEEYG 1004

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKS 1415
            LFI IE + L GLCH SELS++   ++      +R G+ VK KIL +D EKRRISLG+K 
Sbjct: 1005 LFIEIEGSKLSGLCHKSELSDNKDADVTLALRSFREGDAVKAKILSIDVEKRRISLGLKP 1064

Query: 1416 SYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE--DGGSLVLAQ 1473
            SYF  +  +L+ S E+ + +  EE  ++    ++E +     ++D  SE  D    + ++
Sbjct: 1065 SYFTEE--DLEASDEDGTSDDDEESHAFG---VIETAEATASEVDSGSEHSDAEEDIASE 1119

Query: 1474 IESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEK--------NNRH-----AK 1520
             E+   V  ++V+++ +    D     N   T  A  +  K          +H     A 
Sbjct: 1120 DEADGEVVNMDVDINLQSTGTDRPSVSNVTSTSNAAFLSLKEGFQWSVHGTQHEDVEMAS 1179

Query: 1521 KKEKEEREQEIRAA--------EERL---LEKDAPRTPDEFERLVRSSPNSSFVWIKYMA 1569
              E +E +++            E+ L   L    P +  +FER++  SPNSS++WI+YM+
Sbjct: 1180 SSEDDEDQEKTSGKKKRKRKEIEQDLTADLHTKTPESNADFERVLLGSPNSSYLWIQYMS 1239

Query: 1570 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1629
            F L +++V+KAR IA RAL TIN REE EKLN+W+A  NLEN YG   +E++   F+ A 
Sbjct: 1240 FQLQLSEVDKAREIARRALGTINFREEQEKLNVWIALLNLENTYGT--DESLEATFKDAA 1297

Query: 1630 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQ 1688
            ++ D K VHL +  + E++++ + A+E   K  KKF  S KVW    +  L++ + E  +
Sbjct: 1298 RHNDSKTVHLRMAVILEQSDKIEKAEEQYKKTCKKFSQSSKVWTLFGEHYLRRGKLEEAR 1357

Query: 1689 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1748
             ++ R+L SL + KH+K IS+ A  E+K G  +RG+++FEGI+  +PKR DLWSIY+D E
Sbjct: 1358 QLLPRSLQSLEKRKHLKTISKFAQFEYKLGDPERGKTLFEGIVDSHPKRWDLWSIYMDME 1417

Query: 1749 IRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
               G +  +R LF R ++L +   K K  FKK+L+ E+ +G+EE    VK KA+E+ +
Sbjct: 1418 ATQGAIGNLRNLFNRVLALKMTSHKAKSFFKKWLDLERRLGDEEGAAAVKAKAIEWTQ 1475



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 170/696 (24%), Positives = 303/696 (43%), Gaps = 63/696 (9%)

Query: 61  IFHVGQLVSCIVLQL---------------DDDKKEIGKRKIWLSLRLSLLYKGLSLETV 105
           +F  GQ V  +V  +               DD +K    R++ LS+    +  G++   V
Sbjct: 197 LFKPGQYVRAVVTTVHAPGSTDVSGLGRARDDVQK--ASRRVELSIVPEKVNGGVAKADV 254

Query: 106 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP---GLLLQGVVRSI 162
           + G  + A +KS+EDHGYIL+ G+P  +GFL   + A+    + K    G LL   V  +
Sbjct: 255 RPGFTMAAAIKSVEDHGYILNLGVPEISGFLSFKDAAKCYPQNSKKLHVGQLLDVSVTKV 314

Query: 163 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 222
               +   ++ DP  +      ++  ++   ++PG +V + + ++  +G+ L  L +F G
Sbjct: 315 AGNGRTCNVTVDPQEIHSSSISEISNVTS--VLPGALVQSLITAVHPDGLNLQVLGFFGG 372

Query: 223 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILF----VDPTSRAVG-----LTLNPYLLHN 273
           TVD FHL    P  N    Y    KV AR+L+      P   A+      L+L+P     
Sbjct: 373 TVDQFHLLPGEPEVN----YKVGTKVKARVLYDLHQSSPPRFALSLAEHVLSLSPKHTDG 428

Query: 274 RAPPSHVKVGDIY------DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
               S   + D Y      D  +V+RV+   GL+  +  +P     +V IS V+++ +  
Sbjct: 429 SKESSGSTLFDAYPVGCTLDAVEVIRVESERGLITRV--SP-EVEGFVHISHVSDDHIPS 485

Query: 328 LEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 384
           L      +K G+  + R+ G   L+G+    L+ S          +V+ G ++KG V  +
Sbjct: 486 LSSSSGTWKIGTTHKARVTGHFPLDGMLQLSLRPSILSQKFLQVGEVQVGEIIKGTVKKL 545

Query: 385 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKK 442
                 V   G V  +    H ++  +  P K+FK GA +  R+L V    KRI +T KK
Sbjct: 546 TDSALFVSISGNVDGVVWPNHYADIILKHPQKRFKPGASIKCRILVVDPARKRIALTAKK 605

Query: 443 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
           TL+ S L I+  + +A   L+TH  + K       V FYNG++   P  E          
Sbjct: 606 TLLDSTLPIIRKFEDAQVGLVTHAVVFKTTDKILQVEFYNGLKAVVPLREASESAVTSLP 665

Query: 503 SMYHVGQVVKCRIMSSIPASRRINLSF-MMKPT---RVSEDDLVKLGSLVSGVVDVVTPN 558
             + VG+ V  RI++    + RI  S     PT    V++   V++G+ V G +  V  +
Sbjct: 666 EAFPVGKPVTVRIITVDTETSRITASIRQASPTYKSAVTDISGVEIGNTVEGTISDVRKD 725

Query: 559 AVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLLVLDNESSNLLLSAK 617
            +V+ +     +   +   +LA+    +   +++ +K G +  +L+V+        +   
Sbjct: 726 QIVLTLQPTQVT-ALLSLNNLANRRNVSVAQLRTRLKIGDKLQELVVVSRNPEKGFVLVA 784

Query: 618 YSLINSAQQLPSDA---SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 674
            S  +    +P ++     I    +V G V   +  G  V+    ++G    +   D   
Sbjct: 785 SSPKDKVALVPKNSLSLDTIQVGQLVGGRVLRHVRQGALVKLTQSISGVLHPTDTCDDYE 844

Query: 675 ADLSKTYY--VGQSVRSNILDVNSETGRITLSLKQS 708
              S T +  V   +++ ++ V+ E  ++TLS + S
Sbjct: 845 ---SGTPFPPVDSIIKAVVIAVDKEKRQLTLSTRSS 877



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            I++G VK +T    F+ +S  +D  V  ++ +D  ++ P+K F  G  +  R+L V+P  
Sbjct: 537  IIKGTVKKLTDSALFVSISGNVDGVVWPNHYADIILKHPQKRFKPGASIKCRILVVDPAR 596

Query: 1316 KRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
            KR+ +T K +  DS   +   I    +  VG +    + +     L +   N  L  +  
Sbjct: 597  KRIALTAKKTLLDS---TLPIIRKFEDAQVGLVTHAVVFKTTDKILQVEFYN-GLKAVVP 652

Query: 1374 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + E SE  V ++   +  G+ V V+I+ VD E  RI+  ++ +
Sbjct: 653  LREASESAVTSLPEAFPVGKPVTVRIITVDTETSRITASIRQA 695



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 123/256 (48%), Gaps = 17/256 (6%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVKP-GLLLQ 156
            LSL+T+Q G ++   V      G ++     S +G L   +  ++  SG    P   +++
Sbjct: 799  LSLDTIQVGQLVGGRVLRHVRQGALVKL-TQSISGVLHPTDTCDDYESGTPFPPVDSIIK 857

Query: 157  GVVRSIDRTRKVVYLSS-----DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 211
             VV ++D+ ++ + LS+     +PD       ++L G+  D L PG  V   ++S+ E+G
Sbjct: 858  AVVIAVDKEKRQLTLSTRSSRFNPDNRKALADRELVGL--DALSPGDSVRGFIKSVAEHG 915

Query: 212  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 271
            + +         V I  L + F   +WK+ +  ++ V  RI+ VD   + V ++     +
Sbjct: 916  LFVMLGRNIDARVQIKELFDEF-VKDWKSRFTVNQLVKGRIVSVDREKKQVEMSFRSGDI 974

Query: 272  HNRAPPSHVKVGDIYDQSKVV-RVDR--GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRK 327
              ++  + + + D+ +  K+  RV R    GL ++I  + +S   + + +SD  + +V  
Sbjct: 975  -TKSASTKLTLADLSEGQKINGRVKRVEEYGLFIEIEGSKLSGLCHKSELSDNKDADVTL 1033

Query: 328  LEKKYKEGSCVRVRIL 343
              + ++EG  V+ +IL
Sbjct: 1034 ALRSFREGDAVKAKIL 1049



 Score = 44.7 bits (104), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 34/251 (13%)

Query: 886  PQKQFLNGQSVIATVMALPSSSTAGRLLLLLK----AISETETSSSKRAKKKS---SYDV 938
            P+  +  G  V A V+     S+  R  L L     ++S   T  SK +   +   +Y V
Sbjct: 384  PEVNYKVGTKVKARVLYDLHQSSPPRFALSLAEHVLSLSPKHTDGSKESSGSTLFDAYPV 443

Query: 939  GSLVQA-EITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 996
            G  + A E+  ++    L  +      G +HI+ V+DD    + +    +KIG T  AR+
Sbjct: 444  GCTLDAVEVIRVESERGLITRVSPEVEGFVHISHVSDDHIPSLSSSSGTWKIGTTHKARV 503

Query: 997  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1056
                         + +LS++PS+L      S+   +  +V +G+ + G V K+ +    +
Sbjct: 504  TGH-----FPLDGMLQLSLRPSIL------SQKFLQVGEVQVGEIIKGTVKKLTDSALFV 552

Query: 1057 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL--------- 1107
            +IS ++     +  + Y    L+  Q+RF  G ++   +L ++  +K + L         
Sbjct: 553  SISGNVDG--VVWPNHYADIILKHPQKRFKPGASIKCRILVVDPARKRIALTAKKTLLDS 610

Query: 1108 ---VLRPFQDG 1115
               ++R F+D 
Sbjct: 611  TLPIIRKFEDA 621


>gi|240282264|gb|EER45767.1| U3 snoRNP-associated protein Rrp5 [Ajellomyces capsulatus H143]
          Length = 1781

 Score =  382 bits (981), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 378/1427 (26%), Positives = 667/1427 (46%), Gaps = 199/1427 (13%)

Query: 468  ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 523
            +TK+E   G +V+F +   GF   S L  D     SS    Y V    + RI   +  S 
Sbjct: 468  VTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARI---VGFSA 524

Query: 524  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 574
              NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 525  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 583

Query: 575  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 632
            P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 584  PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 640

Query: 633  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 641  DILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 700

Query: 693  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 752
            +V++E  ++ +S K    S+       EH              H G+             
Sbjct: 701  NVDAELRKLVVSCKDQLSSTEAYKRALEHI-------------HPGN------------T 735

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI----------QAAILDV 802
            + G V E ++  +++  E+   V      H   G    +G+ +          +  IL++
Sbjct: 736  VSGTVFEKSNEDILLKLEDSGLVARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNM 795

Query: 803  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYL 861
             K+ RL+ ++ K           S +QA+++       +DL     V   V+ I+ +   
Sbjct: 796  QKSHRLIKVTNKP----------SLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLF 845

Query: 862  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 921
            V  L      +    V D +  K P   +   Q +  TV ++       R +L LK    
Sbjct: 846  VEFLGGLTGFVPKRLVDDDHVNK-PSFGYALAQPISLTVQSIEDDRQ--RFILTLKEPHT 902

Query: 922  TETSSSKRAKKKSSYD------------------VGSLVQAEITEIKPLELRLKFGIGFH 963
             +   S R K+  + +                   G + +A++  IK  ++ ++      
Sbjct: 903  GKQRVSDRDKESDNANQSSINPIDGDIKSLDDLTFGRITKAKVVSIKETQINVQLAENIQ 962

Query: 964  GRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWE 1012
            GRI ++EV D    + +       FK  Q +  RII    A+S++  P   +S    ++E
Sbjct: 963  GRIDVSEVFDSWEAIKDRKQPLRFFKAKQILPVRIIGIHDARSHRFLPISHRSGKYPVFE 1022

Query: 1013 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1072
            LS KPS L  +++    L     V IG    G+V  + ++   ++IS +++ +L + D +
Sbjct: 1023 LSAKPSSLESTDLD---LLSLDKVKIGSAWIGFVNNIGDDCLWISISPNVRGRLRLTDVS 1079

Query: 1073 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1132
             + S L +    F +G A+  HV  ++ +K  L L  +    G S   + IS+       
Sbjct: 1080 DDLSLLSDITTNFPVGSAIKVHVTGVDTDKNRLDLSAK---HGGSPNKLTISD------F 1130

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
             +G+I+ GR++++      ++VQ+   + G ++  ++                 D  S  
Sbjct: 1131 SKGEILLGRVTRVTEH--QVLVQLSDTVVGAINLIDMA----------------DDYSKI 1172

Query: 1193 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
            +   F K ++L +         +++  +  L  M S+     S  +  P   +  I  + 
Sbjct: 1173 NPADFHKNELLRVC-----VVDIDVPKKKILLSMRSSRVLSSSLPIQDP--EISSISQIK 1225

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
             N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF + +LV GRV+  +
Sbjct: 1226 VNDIVRGFVRRVADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQVNQLVRGRVILAD 1285

Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGL 1371
            P S +++++LK S      ++ I  + +L  G  V G+++ VE +G FI I+ T NL GL
Sbjct: 1286 PESNKLQMSLKQSVLDPNYKTPIT-IKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGL 1344

Query: 1372 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-----DADNLQ 1426
            CH +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+     D +N+Q
Sbjct: 1345 CHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKDSDDESDGENVQ 1404

Query: 1427 MSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVN 1486
              SEE   E+  + G                D+++ES D  S+    +E   +    E +
Sbjct: 1405 DKSEENVSESQYDGG---------------MDLELESGDDISMGGVDLEDTMNGDNSESD 1449

Query: 1487 LDDEQPDM----DNGIS------------QNQGHTDEAKTIDEKNNRHAKKKEKEEREQE 1530
              D    M    D GI+             N   TDE    D  ++     K+K+ R+QE
Sbjct: 1450 SSDWDVQMTGTKDAGITGGLVTSGFDWNGNNTVGTDEDNESDSDSDNKTAVKKKKRRKQE 1509

Query: 1531 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1590
            I+      L+ + P++  ++ERL+   PNSS +W+KYMAF L +++V+KAR IAERAL++
Sbjct: 1510 IQVDRTGDLDTNGPQSVADYERLLLGEPNSSLLWLKYMAFQLELSEVDKAREIAERALRS 1569

Query: 1591 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1650
            I+I ++ EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  L  +Y ++ +
Sbjct: 1570 ISIGQDTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHERLTSIYIQSGK 1627

Query: 1651 NKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQEGVQA-VVQRALLSLPRHKHI---- 1704
            +  ADEL   ++ KKF  S  ++L     L   + E  +   + RA    P H H+    
Sbjct: 1628 HDKADELFQAILKKKFTQSPNIYLNFATFLFDTRAEPERGRALSRAHPITPTHTHVDITS 1687

Query: 1705 KFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFER 1763
            KF+S  ++L+ ++       ++FE +   + P+  DLW++ LD EI+ GD++        
Sbjct: 1688 KFVS-GSLLQRRHRTW---TTIFERLHHLFIPQTRDLWNVLLDLEIKNGDME-------- 1735

Query: 1764 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
                 L  K+ KF FKK+L +E+  G+E+ ++ VK +A +YV +  A
Sbjct: 1736 ---QRLKDKQAKFFFKKWLAFEEKTGDEKMVDEVKARAADYVRAIKA 1779



 Score =  168 bits (426), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 187/755 (24%), Positives = 324/755 (42%), Gaps = 52/755 (6%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--- 57
           + I  G K+ G V+ +N  D+ + LP  L G   L   +  L   ++  + ++++     
Sbjct: 146 ERIVVGSKILGQVSSINAHDIGLSLPNNLTGYIPLTAVSKTLQQKIEKLLNSSQEEDDNS 205

Query: 58  -----------LPTIFHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLE 103
                      L + F +GQ +   V   + +    K  GK+ I LS+       GLS  
Sbjct: 206 DGDDGGDGDLDLKSYFKLGQYLRAAVTSTETEVNHGKIKGKKHIELSVDPREANSGLSKS 265

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAEN-SGIDVKPGLLLQGVVR 160
            +     + A V S+EDHG ++  GL      GF+    +  +   + +K G +   VV 
Sbjct: 266 DLVVNATVQASVLSVEDHGLVMDLGLEDGQTRGFMSSKEIPHDLELLQIKEGTVFLCVVT 325

Query: 161 SIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
             +    VV LS++  T              +I+  +PG      +  +   G+    + 
Sbjct: 326 GHNANGSVVKLSANLPTAGSIKKSHFLASAPTINSFLPGTAAEILLTQVTSTGMAGKIMG 385

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL---------TLNPY 269
                VDI     T    +    Y+   K+  R++   PT+  + L            P 
Sbjct: 386 MLDAVVDIVQSGATAGKEDITARYHVGAKIKGRLICTFPTAEPLKLGFSILDHVVKFTPT 445

Query: 270 LLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
           +L +++    V  +  I  + KV +V+ GLG+ +              +SD   + +   
Sbjct: 446 VLDHKSSCEGVPAISAIVPEVKVTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISST 505

Query: 329 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAV 384
           +  Y   S    RI+GF  L+ L    L+    +       DV  G VVKGK+    I  
Sbjct: 506 QGPYMVDSTHEARIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGP 565

Query: 385 DSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 441
           D   G IV    G+  L P  HMS+ ++  P KKF+ G ++  R+L V  + +++ +T K
Sbjct: 566 DGISGLIVSLADGISGLVPGMHMSDTKLQHPEKKFREGVQVSARILSVNLEKRQLRLTLK 625

Query: 442 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           KTL+ S+ +    Y++      + G I  I+ HG  V+FY  V+GF P SE+      +P
Sbjct: 626 KTLLNSESSTWCDYSDILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDP 685

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL--VKLGSLVSGVVDVVTP 557
           +  +++GQVV    ++     R++ +S    +  T   +  L  +  G+ VSG V   + 
Sbjct: 686 AQHFNIGQVVNVHALNVDAELRKLVVSCKDQLSSTEAYKRALEHIHPGNTVSGTVFEKSN 745

Query: 558 NAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL-- 614
             +++ +   G     +  EH++D          + I+ G + ++LL+L+ + S+ L+  
Sbjct: 746 EDILLKLEDSGLV-ARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNMQKSHRLIKV 804

Query: 615 SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 672
           + K SL  + Q  +LP+    +   S V G+V NII  G FV FLG LTGF P+    D 
Sbjct: 805 TNKPSLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLFVEFLGGLTGFVPKRLVDDD 864

Query: 673 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
                S  Y + Q +   +  +  +  R  L+LK+
Sbjct: 865 HVNKPSFGYALAQPISLTVQSIEDDRQRFILTLKE 899



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 22/248 (8%)

Query: 189  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 248
            ++I     G ++  RV  + E+ V++       G +++  + + +   N   D+++++ +
Sbjct: 1125 LTISDFSKGEILLGRVTRVTEHQVLVQLSDTVVGAINLIDMADDYSKIN-PADFHKNELL 1183

Query: 249  NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGL 298
               ++ +D   + + L++    + + + P         S +KV DI  +  V RV D GL
Sbjct: 1184 RVCVVDIDVPKKKILLSMRSSRVLSSSLPIQDPEISSISQIKVNDIV-RGFVRRVADNGL 1242

Query: 299  GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 358
             + L    T     AYV ISD+++  +++ + +++    VR R++            LK 
Sbjct: 1243 FVTLGHDVT-----AYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLKQ 1297

Query: 359  SAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVK 413
            S  +       T  D+K G  V GKV  V+ FGA +   G   +  LC    M+E ++  
Sbjct: 1298 SVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVED 1357

Query: 414  PGKKFKVG 421
              K F+ G
Sbjct: 1358 ARKLFEKG 1365


>gi|190348684|gb|EDK41184.2| hypothetical protein PGUG_05282 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1674

 Score =  382 bits (980), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 390/1496 (26%), Positives = 687/1496 (45%), Gaps = 183/1496 (12%)

Query: 371  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
            ++PG++V   V  +   G   +  G V     L ++ E+++     KF +G  +  RV+ 
Sbjct: 301  IQPGIIVDALVAEITKEGITTKVFGMVDGTISLSNIGEYDLDSLNHKFTIGNSIKARVIA 360

Query: 431  VKSKRITVTHKKTLVKSKLA-ILS-SYAEATDRLITH--GWI-TKIEKHGC---FVRFYN 482
            V  K  T    K LV S L  ILS    E TD L     G++  ++E  G    ++    
Sbjct: 361  VLLKGGT----KKLVLSILPRILSLDSQENTDALEAFPIGFVFDQVEVIGLDSNYIFVST 416

Query: 483  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS--------SIPASRRINLSFMMKPT 534
            G   +  +  +      +    Y VG   K R++         ++    +I  +  M P+
Sbjct: 417  GTSSYHGQVHISKINQEKVIDDYFVGSKHKARVIGLNKFEGLLTLTMDPKIIDTKFMVPS 476

Query: 535  RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMK 590
            ++   + +  G ++      V P+   + V         +P EH++D    + E    + 
Sbjct: 477  QIPVGEYINGGEIIK-----VLPDGAGIQVKIFNDFDAFVPPEHMSDVRLVYPERKYKVG 531

Query: 591  SVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIE 649
            S IK         VL    S + ++ K +L+N    ++ S+             V   + 
Sbjct: 532  SKIKG-------RVLKVHGSKIFITLKKTLVNIEDDEVLSNFESAEIGLKTPATVEKFVH 584

Query: 650  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
             G  V F G L  F P+++  +    D       GQ+V   I+D +    R+ ++LKQ+ 
Sbjct: 585  NGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIMDRDETQQRLIVTLKQND 644

Query: 710  CS----STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHESNDFG 764
             +    S  +S +    ++E  I  ++ SK   S +  +EG  + G +  G++ + N   
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASI--VEKSKDKDSVIVEIEGSNLRGVIYAGQLSDGN--- 699

Query: 765  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 824
                +E+   +Y            +++G  ++A +L+     R V LS K  FI+     
Sbjct: 700  ----YEQTRALY----------KKIQAGDKLEAVVLERDMKTRSVILSAKQSFIN----- 740

Query: 825  NSNRQAQKKKRKREASKDLGVHQTV-NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 883
                   K  +      D+ V   V    ++ V    L ++       +  A  +  N  
Sbjct: 741  -----GAKNNQIPSQFSDVTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPN 795

Query: 884  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE--------TSSSKRAKKKSS 935
            +   K+F   QSV   V+ L + +   R LL L +  ++E          S+K  K  + 
Sbjct: 796  EDILKRFYKNQSVSCRVIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTK--KLITD 851

Query: 936  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVT 993
            Y  G+  QA+I  IK  +L ++      GR+ IT+  +  S++ +     S F   + ++
Sbjct: 852  YTPGAKTQAKIKSIKGTQLNVQLADNLQGRLDITQCFEKWSDIKDKNQPLSQFHKDEILS 911

Query: 994  ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG---SKLLFEECDVSIGQRVTGYVYKVD 1050
             R++      D K      +S + S  T+ E+       + E  DV +G     +V  + 
Sbjct: 912  VRVLGYH---DAKNHTFLPISHRKSKNTILELTLLEKDPITEIKDVKVGSEHVAFVNNLA 968

Query: 1051 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1110
              +  +++S  +K ++  +D + E S  ++ + R  IG A+   V  I++E K + L  R
Sbjct: 969  RGFVWVSMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNIILTSR 1028

Query: 1111 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1170
                     TV    D     +        R+ K+L     ++V++   +    + T   
Sbjct: 1029 KH-------TVTKFED-----VELNKQYPARVLKVLPSF--VLVELAHDVVASSYIT--- 1071

Query: 1171 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1230
                 D L+ Y     +     D   +    VL + +  +    + +SLR        TN
Sbjct: 1072 -----DALNDYSSALNEVFHAND---YTTATVLAVDKDSK---KISVSLR--------TN 1112

Query: 1231 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1290
             +     VD   K +  +EDL    +V+G+VKNV + G ++ L R +   V +S+LSD Y
Sbjct: 1113 KA-----VD---KVINSVEDLQRGDVVKGFVKNVANNGVYVSLGRSVHGLVRVSDLSDSY 1164

Query: 1291 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL---SNLHVGDIV 1347
            ++  +K F   + V G+V++ +    RV +TLK S+       E+N L    +L  G++ 
Sbjct: 1165 LKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESEV----NGELNVLKKFEDLKEGEVY 1219

Query: 1348 IGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1406
             G +++V  +G+F+ ++ T N+ GLCH SE++++   +++ ++  G++VKVKIL ++ EK
Sbjct: 1220 EGSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEK 1279

Query: 1407 RRISLGMKSSYFKNDA-------DNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDM 1459
            +++SLGMK SYF  +A       D+++M+  EE+  +  E    +   ++E +  A  D+
Sbjct: 1280 KQLSLGMKVSYFAPEATQNEDSDDDVEMAESEEATPSASESSDESDEEIVEGAFEADSDV 1339

Query: 1460 DMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHA 1519
            D + E+  ++V                      D   G+S N G    A  +D+      
Sbjct: 1340 DHDDEETSNVV--------------------AEDSGMGLSTN-GFDWTASILDQAQESDE 1378

Query: 1520 K-------KKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1572
                     K+K++R  ++   +   +   AP++  +FER++  SPNSS +W+ YM+F L
Sbjct: 1379 SSDDEDFVNKKKKKRSTKVVEDKTADINTRAPQSVSDFERMLIGSPNSSVLWMNYMSFQL 1438

Query: 1573 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1632
             ++++EKAR I ERAL+TIN REE EKLNIW+A  NLEN +    +E++   F+R+ QY 
Sbjct: 1439 QLSEIEKAREIGERALKTINYREEQEKLNIWIALLNLENTFDT--KESLEDTFRRSCQYM 1496

Query: 1633 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVV 1691
            +P  +H  L  +Y  +E+   A  L   MIKKF  +  VW+     LL +Q  + V   +
Sbjct: 1497 EPLTMHQKLASIYTLSEKFDEATRLYKVMIKKFSKNVSVWVAYASYLLDRQMNDEVHEAL 1556

Query: 1692 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1751
             +A+ +LP  + I+ + + A LEF  G  ++GRS+FEG++++ PKR DLW++YLDQEI+L
Sbjct: 1557 AKAMQALPSKESIEVVKKFAQLEFTKGDPEQGRSLFEGLMADAPKRIDLWNVYLDQEIKL 1616

Query: 1752 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             D   +  LFER I+  L  K+ KF F K+L+YE+   +E+    VK KA EYVE+
Sbjct: 1617 NDKSKVENLFERLITKKLTKKQAKFFFTKWLKYEEDQNDEKSGARVKAKAAEYVEA 1672



 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 172/681 (25%), Positives = 310/681 (45%), Gaps = 42/681 (6%)

Query: 54  EDNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 110
           +DN LP   +IF  G+ +   V + +  + +  K++I  ++    + + +  E +  G +
Sbjct: 159 KDNELPDLQSIFKAGEWLRAKVTEAELSQSK--KKRIQFTIEPENVNESIEDEDLIPGNL 216

Query: 111 LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP---GLLLQGVVRSIDRTRK 167
           L   V S+ED G IL+ G+   +GF+    L+ N+ ID++    G ++   + +   TR 
Sbjct: 217 LQCSVVSVEDRGVILNTGVSGKSGFISNKELS-NANIDLQSLSEGYVMMTSIAAKPTTR- 274

Query: 168 VVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 227
            + L     +VS    K     S+D + PG++V   V  I + G+         GT+ + 
Sbjct: 275 TISLRPATSSVSSKKNKVSNISSVDAIQPGIIVDALVAEITKEGITTKVFGMVDGTISLS 334

Query: 228 HLQNTFPTTNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLL-----HNRAPPSHV 280
           ++   +   +  + +     + AR++ V     ++ + L++ P +L      N       
Sbjct: 335 NI-GEYDLDSLNHKFTIGNSIKARVIAVLLKGGTKKLVLSILPRILSLDSQENTDALEAF 393

Query: 281 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 340
            +G ++DQ +V+ +D      + + +   S    V IS + +E   K+   Y  GS  + 
Sbjct: 394 PIGFVFDQVEVIGLDSNY---IFVSTGTSSYHGQVHISKINQE---KVIDDYFVGSKHKA 447

Query: 341 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGV 397
           R++G    EGL T  +     +      S +  G  + G ++I V  D  G  V+     
Sbjct: 448 RVIGLNKFEGLLTLTMDPKIIDTKFMVPSQIPVGEYINGGEIIKVLPDGAGIQVKIFNDF 507

Query: 398 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYA 456
            A  P  HMS+  +V P +K+KVG+++  RVL V   +I +T KKTLV      +LS++ 
Sbjct: 508 DAFVPPEHMSDVRLVYPERKYKVGSKIKGRVLKVHGSKIFITLKKTLVNIEDDEVLSNFE 567

Query: 457 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 516
            A   L T   + K   +G  V F+  ++ F P++E+      +       GQ V  RIM
Sbjct: 568 SAEIGLKTPATVEKFVHNGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIM 627

Query: 517 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG-------VVDVVTPNAVVVYVIAKGY 569
                 +R  L   +K   V++     + S+V G       +V+       V+  I    
Sbjct: 628 DRDETQQR--LIVTLKQNDVTKAQQSAVSSVVPGKTIVEASIVEKSKDKDSVIVEIEGSN 685

Query: 570 SKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQ-- 625
            +G I    L+D + E    +   I+ G + + +++  D ++ +++LSAK S IN A+  
Sbjct: 686 LRGVIYAGQLSDGNYEQTRALYKKIQAGDKLEAVVLERDMKTRSVILSAKQSFINGAKNN 745

Query: 626 QLPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           Q+PS  S +   + V+ GY+ ++   G FV F G+LTG      A      D+ K +Y  
Sbjct: 746 QIPSQFSDVTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPNEDILKRFYKN 805

Query: 685 QSVRSNILDVNSETGRITLSL 705
           QSV   ++ +++E  R  LSL
Sbjct: 806 QSVSCRVIRLDNENKRFLLSL 826



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 202/928 (21%), Positives = 391/928 (42%), Gaps = 112/928 (12%)

Query: 513  CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 572
             R +S  PA+  ++ S   K + +S  D ++ G +V  +V  +T   +   V   G   G
Sbjct: 273  TRTISLRPATSSVS-SKKNKVSNISSVDAIQPGIIVDALVAEITKEGITTKVF--GMVDG 329

Query: 573  TIPTEHLA----DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP 628
            TI   ++     D L H   + + IK        ++L   +  L+LS    +++   Q  
Sbjct: 330  TISLSNIGEYDLDSLNHKFTIGNSIKARV---IAVLLKGGTKKLVLSILPRILSLDSQEN 386

Query: 629  SDASHIHPNSVVHGYVCNIIET-GCFVRFLGRLTGFAPRSKAVDGQRADLSKT---YYVG 684
            +DA    P     G+V + +E  G    ++   TG +     V   + +  K    Y+VG
Sbjct: 387  TDALEAFP----IGFVFDQVEVIGLDSNYIFVSTGTSSYHGQVHISKINQEKVIDDYFVG 442

Query: 685  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
               ++ ++ +N   G +TL++        D   +   F++  +I +      NG E+  +
Sbjct: 443  SKHKARVIGLNKFEGLLTLTM--------DPKIIDTKFMVPSQIPV--GEYINGGEI--I 490

Query: 745  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 804
            +    G+ I+ K+   NDF   V  E  SDV       +      + GS I+  +L V  
Sbjct: 491  KVLPDGAGIQVKIF--NDFDAFVPPEHMSDVRLVYPERKY-----KVGSKIKGRVLKVHG 543

Query: 805  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 864
            ++  + L    V I+   E  SN ++ +   K  A+ +  VH    AIV       L   
Sbjct: 544  SKIFITLKKTLVNIED-DEVLSNFESAEIGLKTPATVEKFVHN--GAIVSFF--GNLRAF 598

Query: 865  LPEYNHSIGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETE 923
            LP+  + I    V D        K FL  GQ+V   +M      T  RL++ LK   + +
Sbjct: 599  LPK--NEISETFVKD-------AKDFLKKGQTVNVRIM--DRDETQQRLIVTLK---QND 644

Query: 924  TSSSKRAKKKSSYDVGSLVQAEITE--------IKPLELRLKFGIGFHGRIHITEVNDDK 975
             + ++++   S     ++V+A I E        I  +E     G    G I+  +++D  
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASIVEKSKDKDSVIVEIE-----GSNLRGVIYAGQLSDGN 699

Query: 976  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1035
                  L+   + G  + A ++ +    DMK   +  LS K S +  ++  +++  +  D
Sbjct: 700  YEQTRALYKKIQAGDKLEAVVLER----DMKTRSVI-LSAKQSFINGAK-NNQIPSQFSD 753

Query: 1036 VSIGQRV-TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            V++  +V TGY+  V N    +     L   +    +   P+E  +  +RF+  ++V+  
Sbjct: 754  VTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPNE--DILKRFYKNQSVSCR 811

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG- 1151
            V+ ++ E K  R +L    +  S+   ++ N  D+ +  I +        +KI S  G  
Sbjct: 812  VIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTKKLITDYTPGAKTQAKIKSIKGTQ 869

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
            L VQ+  +L GR+  T+    C        D+ Q  PLS + + + +  +VL        
Sbjct: 870  LNVQLADNLQGRLDITQ----CFEKWSDIKDKNQ--PLSQFHKDEILSVRVLGYHDAKNH 923

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
            TF + +S R S + +      +L+     P   + +I+D+        +V N+     ++
Sbjct: 924  TF-LPISHRKSKNTIL-----ELTLLEKDP---ITEIKDVKVGSEHVAFVNNLARGFVWV 974

Query: 1272 MLSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
             +S  +  +V   +LSD     E  E   PIG  +  +V  ++   K +   + TS   T
Sbjct: 975  SMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNI---ILTSRKHT 1031

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE-NTNLVGLCHVSELSEDHVDNIETI 1388
             ++ E   L+  +   +    +K + S   F+ +E   ++V   ++++   D+   +  +
Sbjct: 1032 VTKFEDVELNKQYPARV----LKVLPS---FVLVELAHDVVASSYITDALNDYSSALNEV 1084

Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + A +     +L VDK+ ++IS+ ++++
Sbjct: 1085 FHANDYTTATVLAVDKDSKKISVSLRTN 1112



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 126/299 (42%), Gaps = 40/299 (13%)

Query: 152  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG---ISIDLLVPGMMVSTRVQSIL 208
            G  ++  V+ ID   K + L+S   TV+K    +L       +  ++P  ++      ++
Sbjct: 1006 GAAIKAKVKQIDEEHKNIILTSRKHTVTKFEDVELNKQYPARVLKVLPSFVLVELAHDVV 1065

Query: 209  ENGVMLSFLTYFTGTVD-IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 267
             +  +   L  ++  ++ +FH           NDY       A +L VD  S+ + ++L 
Sbjct: 1066 ASSYITDALNDYSSALNEVFH----------ANDY-----TTATVLAVDKDSKKISVSLR 1110

Query: 268  PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVA 321
                 N+A    +   +   +  VV+     G + ++ +  V      S    V +SD++
Sbjct: 1111 T----NKAVDKVINSVEDLQRGDVVK-----GFVKNVANNGVYVSLGRSVHGLVRVSDLS 1161

Query: 322  EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVK 378
            +  ++  +K +K+   V  +++  +  EG     LK S   G   ++    D+K G V +
Sbjct: 1162 DSYLKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESEVNGELNVLKKFEDLKEGEVYE 1220

Query: 379  GKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
            G V  V  FG  V+  G   V  LC    +++ + V     F  G  +  ++LG+ S++
Sbjct: 1221 GSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEK 1279


>gi|348532680|ref|XP_003453834.1| PREDICTED: protein RRP5 homolog [Oreochromis niloticus]
          Length = 1805

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 339/1381 (24%), Positives = 647/1381 (46%), Gaps = 136/1381 (9%)

Query: 1    MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDN- 56
            ++ +++  GM + G V EV + ++ + LP GL+G   +    D+   +L  ++++ +   
Sbjct: 79   LHVKDVKEGMLMLGCVKEVTDFEVTVSLPSGLQGFLSIKNICDSYTKLLSEQLDSTDTEE 138

Query: 57   --LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 114
               LP +F+ G ++ C+V +LD  K+  G   I LS+   L+ K L+   ++ GMVL+A 
Sbjct: 139  ICSLPHLFYPGMVLRCVVAKLDVTKR--GSLSIQLSINPKLVNKNLTPSALKTGMVLSAC 196

Query: 115  VKSIEDHGYILHFGLPSFTGFLPRNNLA--ENSGIDVKPGLLLQGVVRSIDRTRKVVYLS 172
            V+S+ED+GYI+  G+     FL + +L    N+  ++K G  L   V  +    +VV LS
Sbjct: 197  VESVEDYGYIIDIGVSGTKAFLSKESLKFKHNNAQELKVGQYLTSQVEEVKNDGRVVQLS 256

Query: 173  SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 232
            ++  T+++   +  +G ++  L+PG++V   ++ + ++G++L FL+ F G VD  H++  
Sbjct: 257  ANLTTIAQTCAEPKQGWNLTTLLPGLLVKATIKEVTKHGLILDFLSSFNGQVDFLHME-- 314

Query: 233  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYD 287
                   + Y +  KVNAR+L+++P +R VG++L  +L+H     +  P    ++G++  
Sbjct: 315  ---PEQASSYTKGLKVNARVLYIEPQTRLVGMSLRSHLIHLETGIDPVPAGGERIGEVVK 371

Query: 288  QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY---KEGSCVRVRILG 344
            + K+  +    G +L++P     T A+V  + + E      E +     E +C   RIL 
Sbjct: 372  ECKMTAMHHLSGGVLELPD---KTLAFVHRNHLKESNEEANENRVFAQPEHTC---RILD 425

Query: 345  FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
            F  +E +    L+ S      + + D++ G VV+G V  + S G +V     +K L P  
Sbjct: 426  FSPMEQIHFATLRRSVIGKPFYRYHDLQAGQVVEGTVSVLLSHGMVVHLSDHIKGLVPRT 485

Query: 405  HMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL 462
            H+S+  +  P KK+  G ++  RVL V  ++K++ +T KKTLV+S L +  SY +     
Sbjct: 486  HLSDIVLQNPEKKYMEGMKVKCRVLSVDAENKKLYLTRKKTLVESSLPLFLSYNDTRPGR 545

Query: 463  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
            ++HG+I  ++  GC VRFYNGV+G  P SEL  +P   P  +++VGQVVK +++   P  
Sbjct: 546  VSHGYIVSVKDFGCIVRFYNGVKGLVPLSELSSEPIVRPGDIFYVGQVVKAKVLQCDPEK 605

Query: 523  RRINLSFMMKPTRVSEDDL-----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
             ++ LSF     + +E+        ++G  +   V   + N + V ++     +  +P  
Sbjct: 606  GKMVLSFKAVGEKENEETEKPEFDCEVGKRLDAKVLKKSLNGLEVAILPDEI-RAVLPMI 664

Query: 578  HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH 635
            HL+DH+ +  ++   ++ G    +L+       NL L+ K ++  S ++  +  D S I 
Sbjct: 665  HLSDHMSNCPLLWESLQEGDIISKLICSSKNKQNLTLTKKPTVRWSLEEGVVAKDFSEIT 724

Query: 636  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
                + G++ NI+  G FV F   L G AP+S   D    D + ++ VGQ+V + + +++
Sbjct: 725  VGLQLVGWIKNIMSYGVFVEFPYGLVGLAPKSAMTDKFIRDATNSFQVGQTVIAKVTNLD 784

Query: 696  SETGR--ITLSLKQSCCSSTDASF-----MQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 748
             E  R  +TL + +      DA       +QE   + E + +    K N    + +    
Sbjct: 785  EEKRRFLVTLKISEVISPQGDAQTRLINGLQERRAVTEMLVL----KDNSELQQQLAALS 840

Query: 749  IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            +G  ++  V   ND G     +           H + G  +  G  + A +L V      
Sbjct: 841  VGQKLKLTVDTVNDTGARFKSDGLIGATILANKHHMMGVKLTEGQKVGAVVLHVDMLSAC 900

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
            V +S+ +  +             KKK   E  K         A+V+ + +++ V+SL + 
Sbjct: 901  VHVSILSKLMG------------KKKSLAEGLKH-------TAMVQYIDKDFAVISLGDT 941

Query: 869  NHSIGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLL--KAISETETS 925
                   + S  N     + + L  G ++ A V+  PS      L L+   +++ E + +
Sbjct: 942  AQLTVIQTYSHLNEIFLSESEKLKVGMTLSAEVIE-PSCQELQGLPLVSWERSMPERKRT 1000

Query: 926  SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL-FS 984
            +S+    +  +  G ++Q  +  +KP  +++    G  G +H++EV +     + +   S
Sbjct: 1001 ASENQTGRKGHCFGEILQGTVRTVKPTCIQVTLEDGSSGSVHVSEVVEPAEVRLGSFPTS 1060

Query: 985  NFKIGQTVTARII----AKSNK--PDMKKSFLW---ELSIKPSMLTVSEIGSKLLFEE-- 1033
            + K+G  VTAR+I    A S++  P     F +   EL++ PS L  S     +  +E  
Sbjct: 1061 SVKVGSVVTARVIGGREASSHRFLPFSHPKFTYTISELTLIPSKLNESVDFKPVTAKEKL 1120

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTISR--HLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1091
                 G+ +T +V K +++   L ++    +   + +L    +P ++   ++   +G+AV
Sbjct: 1121 SSYKAGEEITCFVSKFNSDRKSLEVTTDPSVTGTVELLAMTTDPKDIGHPEKLHKLGQAV 1180

Query: 1092 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1151
               V+ ++       L L     G+               + +G I  G ++ I    G 
Sbjct: 1181 RARVVEVSFTPHRFVLSL----TGVHK-------------LEKGSITLGIVTNIQPQTGL 1223

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
            LV         ++ F  +  + V+D    Y   + +PL+ Y++ QF++C +L+       
Sbjct: 1224 LV---------KLPFGGMGTVAVTDLADAY---RPNPLAVYNKDQFLRCYLLDNEND--- 1268

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE--KIEDLSPNMIVQGYVKNVTSKGC 1269
                +LSLR           S L+ +   P K  E   +  L    I++GYVK+V  +G 
Sbjct: 1269 --KWQLSLR----------PSRLNPEKAKPAKDPEVLSVNKLKAGQIIRGYVKSVGEQGV 1316

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
            FI LSR +  +  L   +  +V++ +   +  P   L+  ++LS++   + + ++L   D
Sbjct: 1317 FIRLSRSIIGRAELQQTTKYFVKNHKIVSEHLPPNTLLTTKILSIDEEEEFINLSLLPED 1376

Query: 1327 S 1327
            +
Sbjct: 1377 T 1377



 Score =  263 bits (673), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/307 (44%), Positives = 209/307 (68%), Gaps = 4/307 (1%)

Query: 1503 GHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSS 1561
            G   E  T  +K +RH +++EK+E E+ +   E  L++ +  P+    FERL+ +SPNSS
Sbjct: 1494 GEDQEGSTKPQKKSRHEQEQEKKEAEKALIQREAELMDPNLRPKDAAAFERLLLASPNSS 1553

Query: 1562 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1621
             +W+++MA  L    +E+ARS+AERAL+TI+ REE EKLN+WVA  NLEN YG   EE++
Sbjct: 1554 LLWLQFMAHHLQATQIEQARSVAERALKTISFREEQEKLNVWVALLNLENMYGT--EESL 1611

Query: 1622 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1681
             KVF+RA+Q+C+P  V+  L  +Y ++ + K A+ L   M+K+F+ + +VW      LL+
Sbjct: 1612 KKVFERAVQFCEPMPVYQKLAEIYAKSNKIKEAEGLYKTMVKRFRQNKEVWFSYGTFLLQ 1671

Query: 1682 QQQEGVQA-VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1740
            Q Q  V + ++QRAL SLP  + +  I++ A LEF+ G  +RGR+MF+ +L+ YPKRTDL
Sbjct: 1672 QGQSDVASTLLQRALKSLPPKESVDVIAKFAQLEFRYGDVERGRNMFDKVLTTYPKRTDL 1731

Query: 1741 WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1800
            WS+++D  ++ G    IR LF+R I LS+  KK+KF FK+YLEYEK+ G  + ++ VK+K
Sbjct: 1732 WSVFIDLMVKHGSQKEIRALFDRVIHLSVSVKKIKFFFKRYLEYEKTHGTPQSVQAVKEK 1791

Query: 1801 AMEYVES 1807
            A+E+VE+
Sbjct: 1792 AIEFVEA 1798



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 8/177 (4%)

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            GK   +  DL    +V+G V  + S G  + LS  +   V  ++LSD  +++PEK++  G
Sbjct: 443  GKPFYRYHDLQAGQVVEGTVSVLLSHGMVVHLSDHIKGLVPRTHLSDIVLQNPEKKYMEG 502

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN---NLSNLHVGDIVIGQIKRVESYG 1358
              V  RVLSV+  +K++ +T K    +T  +S +    + ++   G +  G I  V+ +G
Sbjct: 503  MKVKCRVLSVDAENKKLYLTRK----KTLVESSLPLFLSYNDTRPGRVSHGYIVSVKDFG 558

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
              +   N  + GL  +SELS + +     I+  G+ VK K+L+ D EK ++ L  K+
Sbjct: 559  CIVRFYN-GVKGLVPLSELSSEPIVRPGDIFYVGQVVKAKVLQCDPEKGKMVLSFKA 614



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 105/488 (21%), Positives = 197/488 (40%), Gaps = 72/488 (14%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
            G LV+A I E+    L L F   F+G++    +  +++       S++  G  V AR++ 
Sbjct: 281  GLLVKATIKEVTKHGLILDFLSSFNGQVDFLHMEPEQA-------SSYTKGLKVNARVLY 333

Query: 999  KSNKPDMKKSFL------WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1052
               +  +    L       E  I P       IG   + +EC ++    ++G V ++ ++
Sbjct: 334  IEPQTRLVGMSLRSHLIHLETGIDPVPAGGERIGE--VVKECKMTAMHHLSGGVLELPDK 391

Query: 1053 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
                    HLK      +S  E +E + F +  H     T  +L  +  +++    LR  
Sbjct: 392  TLAFVHRNHLK------ESNEEANENRVFAQPEH-----TCRILDFSPMEQIHFATLR-- 438

Query: 1113 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1172
               +  K     +D     +  G +V G +S +LS   G+VV +  H+ G V  T L +I
Sbjct: 439  -RSVIGKPFYRYHD-----LQAGQVVEGTVSVLLSH--GMVVHLSDHIKGLVPRTHLSDI 490

Query: 1173 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF--HVELSLRSSLDGMSSTN 1230
             + +P   Y EG             VKC+VL +    +  +    +  + SSL    S N
Sbjct: 491  VLQNPEKKYMEGMK-----------VKCRVLSVDAENKKLYLTRKKTLVESSLPLFLSYN 539

Query: 1231 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1290
                               D  P  +  GY+ +V   GC +     +   V LS LS   
Sbjct: 540  -------------------DTRPGRVSHGYIVSVKDFGCIVRFYNGVKGLVPLSELSSEP 580

Query: 1291 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ 1350
            +  P   F +G++V  +VL  +P   ++ ++ K    +   ++E     +  VG  +  +
Sbjct: 581  IVRPGDIFYVGQVVKAKVLQCDPEKGKMVLSFKAVGEKENEETEKPEF-DCEVGKRLDAK 639

Query: 1351 IKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV--KILKVDKEKRR 1408
            + +    GL + I    +  +  +  LS DH+ N   ++ + ++  +  K++   K K+ 
Sbjct: 640  VLKKSLNGLEVAILPDEIRAVLPMIHLS-DHMSNCPLLWESLQEGDIISKLICSSKNKQN 698

Query: 1409 ISLGMKSS 1416
            ++L  K +
Sbjct: 699  LTLTKKPT 706



 Score = 45.4 bits (106), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
            + S + VG  ++G IK + SYG+F+      LVGL   S +++  + +    ++ G+ V 
Sbjct: 719  DFSEITVGLQLVGWIKNIMSYGVFVEFP-YGLVGLAPKSAMTDKFIRDATNSFQVGQTVI 777

Query: 1397 VKILKVDKEKRRISLGMKSS 1416
             K+  +D+EKRR  + +K S
Sbjct: 778  AKVTNLDEEKRRFLVTLKIS 797


>gi|254586193|ref|XP_002498664.1| ZYRO0G15730p [Zygosaccharomyces rouxii]
 gi|238941558|emb|CAR29731.1| ZYRO0G15730p [Zygosaccharomyces rouxii]
          Length = 1717

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 367/1251 (29%), Positives = 585/1251 (46%), Gaps = 163/1251 (13%)

Query: 602  LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
            L+ LD E++ ++ S      +SA  L S       N V    V      GCF+ F G+L 
Sbjct: 578  LVGLDEENTKVISS-----YDSANALKS------ANEVTIATVQQFHTKGCFLTFFGKLK 626

Query: 662  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 721
            GF P ++  +           +GQ+V   +++V+ E  RI      +C  S D +  Q+ 
Sbjct: 627  GFLPNAEISEVFVRRPQDHLRLGQTVSVKLIEVDEERSRII----ATCKISNDLAAQQK- 681

Query: 722  FLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFIT 780
                                + +E  I G ++++  V E     +VV  ++ S + G I 
Sbjct: 682  --------------------ESIEEMIPGRTLVDVTVAEKTKDSLVVELKDLS-LRGVIY 720

Query: 781  HHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 830
               L+ A +E           GS ++  ++D      + ++SLK   I   +E       
Sbjct: 721  VGHLSDARIEQNRASLKKIKIGSELKGLVIDKDVRTHVFNMSLKESLIKDAKEDLLPINY 780

Query: 831  QKKKRKREASKDLGVHQTVNAIVEIVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQK 888
            Q  K K   +   G  ++++     V  N  ++ L LP Y        +S         K
Sbjct: 781  QDVKSKVPTTPMHGYIKSISEKGLFVAFNGKFVGLVLPSYAVESRDVDIS---------K 831

Query: 889  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA----------KKKSSYDV 938
             F   QSV A +  L +     R LL LK            A          K    + +
Sbjct: 832  TFYVNQSVTAYL--LRTDDEHERFLLSLKEPKNASNGKKSDAEIVNPVDENIKTSEDFTL 889

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARI 996
            G +V+ ++  +K  +L +       GR+ + EV D  +  N  +   +NFK G  +  RI
Sbjct: 890  GRIVKGKVKAVKKNQLNIILADNIFGRVDVAEVFDHIEDINDPKQPLANFKKGDVIDVRI 949

Query: 997  IA----KSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1047
            I     KS+K       + K  + EL++KPS L  +E  +K +    DV + + V G++ 
Sbjct: 950  IGNHDVKSHKFLPITHQVGKGTVLELTVKPSKLKGNEFKAKDI---EDVKVDEEVLGFIN 1006

Query: 1048 KVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLR 1106
               N    LT+S  LKA++  LD   + +EL +  +  F +G A    V  I+KE   + 
Sbjct: 1007 NHLNNSLWLTVSPRLKAKVSALDLVDDGAELSDNLEDSFPLGTAFKIRVTGIDKEHATIT 1066

Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1166
               R             S +N++     G  V  RI K+      +++ +G  + G    
Sbjct: 1067 ATGRSH-----------SINNIKD-AQPGTKVPARILKVNEKY--VLLDLGSGVKGISFA 1112

Query: 1167 TE-LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1225
            T+ L +  +  P +  D+          + Q V   VL +         ++LSLRS    
Sbjct: 1113 TDALDDFSIPLPEAFKDK----------QNQIVSATVLLVDEE---NSRIKLSLRSPAAK 1159

Query: 1226 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1285
              + +S                 EDL    IVQ  VK  T KG F+ LS  L+A V +S 
Sbjct: 1160 THAISSH----------------EDLKKGAIVQALVKGTTDKGVFVYLSSNLEAFVPVSK 1203

Query: 1286 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1345
            LSD Y++  +K +   + V G+V++ +  S R+ +TL+ S+        +    ++ VGD
Sbjct: 1204 LSDSYIKEWKKFYQPMQHVVGKVVNCDDDS-RILLTLRESEV-NGDLKILKGYDDIKVGD 1261

Query: 1346 IVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1404
            I  G +K V  +G+F+ +++T NL GL H +E++++   ++ +++  G++VK  I KV+ 
Sbjct: 1262 IFNGHVKNVTDFGVFVKLDDTVNLTGLAHRTEIADEAPQDLNSLFGVGDRVKAYITKVNA 1321

Query: 1405 EKRRISLGMKSSYFKNDAD-NLQMSSEEESDEAIEEVG---SYNRSSLLENSSVAVQDMD 1460
            EKR+ISL +K+S F  + D N  +S   E+ E+ +EV     YN S          ++  
Sbjct: 1322 EKRKISLSLKASRFSKEEDVNNAVSEANEASESEDEVMEGVDYNHSESEAEPEEEDEEPK 1381

Query: 1461 ME--SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRH 1518
                S DG SL  A  +  AS+      LD  QPD      +++  T   K+  ++N   
Sbjct: 1382 KPKVSSDGLSLS-ADFDWTASI------LDQTQPDE-ESEDEDEDFTKSNKSKRQRN--- 1430

Query: 1519 AKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVE 1578
             K K  E++  EI           AP +  +FERL+   PNSS VW+ YMAF L +++V+
Sbjct: 1431 -KNKIVEDKTIEINTR--------APESVGDFERLILGDPNSSVVWMNYMAFQLQLSEVD 1481

Query: 1579 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVH 1638
            KAR IAERAL+TIN REE EKLNIWVA  NLEN +G   +E +  +F+RA QY D   +H
Sbjct: 1482 KAREIAERALKTINFREELEKLNIWVALLNLENTFGT--DETLNDIFKRACQYMDSFTIH 1539

Query: 1639 LALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALL 1696
              LL +Y+ +E+   A +L     KKF      +W+   + L+ Q Q E  +A++ RAL 
Sbjct: 1540 NKLLSIYQMSEKFDEAADLFKATAKKFGSEKVSIWVSWGEFLISQNQPEEARAILTRALQ 1599

Query: 1697 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1756
             L +  HI  + + A LEF  G  +RGRS+FEG++++ PKR DLW++YLDQE++ GD   
Sbjct: 1600 ILAKRNHIDVVRKFAQLEFNKGEPERGRSLFEGLIADVPKRIDLWNVYLDQEMKTGDKKK 1659

Query: 1757 IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            +  LFER +   L  K+ KF F K+L++E++  + +  EYVK KA+EY E+
Sbjct: 1660 VEDLFERIVVKKLTRKQAKFFFNKWLQFEETQNDSKAEEYVKAKAIEYAEN 1710



 Score =  180 bits (457), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 208/760 (27%), Positives = 345/760 (45%), Gaps = 86/760 (11%)

Query: 12  LWGVVAEVNEKDLVICLPGGLRGLARAA----------DALDPILD-------------- 47
           L G V+ +N+ DL +    G+ G               + LD  +D              
Sbjct: 122 LLGQVSSINKNDLTVSFTDGISGFVTMTHISEQFTSILEQLDDKMDASDHEEDSDHDHSD 181

Query: 48  --NEIEANEDNLLPTI---FHVGQLVSCIVL---QLDDDKKEIGKRKIWLSLRLSLLYKG 99
             +E EA +   LP +   F +GQ + C V     +D  +K+  K++I LSL  S +   
Sbjct: 182 DEDEAEARKSKELPDLNQYFQLGQWLRCRVTINSAMDSGRKKKDKKRIELSLEPSEV-NS 240

Query: 100 LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGV 158
            S E + +   +   VKS+EDHG IL  G+   TGF+ + ++ +  G    PG + L  V
Sbjct: 241 FSEEDLDKYSAVQCSVKSMEDHGAILDLGIEGLTGFVSKKDIPQ--GWQCLPGSVFLANV 298

Query: 159 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
           V+   RT  V +     D  SK   K  +  SID++VPG +V    Q I E GV+     
Sbjct: 299 VKKSSRTVNVNF-----DFRSKS-NKITQISSIDVVVPGQVVDFMCQKITEQGVLGKVFG 352

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT---SRAVGLTLNPYLLHNRA 275
              G + I +    F     ++ +     +  RI+   P+    + + L++ P +L   +
Sbjct: 353 MLPGFLGI-NQSRIFKQEALRHTFAIGSNIKCRIIAQLPSKSDEKTLILSILPNILSLES 411

Query: 276 PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK-- 333
             S  +  D +    + +    LG          S   Y+ + D    +V  L K  +  
Sbjct: 412 KWSKDEALDAFPVGHICQNCEVLG--------RDSEYIYLALDDERFGQVH-LSKAGELV 462

Query: 334 EGSCVR--VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAI 390
           E S  R   R+LG+  ++ L          E       D+  G +V G +++ V S G  
Sbjct: 463 ESSKNRSDARVLGYNGVDKLYQLGTDPKLLELRYLRAEDIPAGELVTGCEIVTVSSKGIE 522

Query: 391 VQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV--- 445
           ++  G   KA  PL H+S+  +V P +KFK+G+++  RVL V ++ RI  T KK+LV   
Sbjct: 523 LRLFGSQFKAFVPLLHISDIRLVYPERKFKIGSKVKCRVLSVDARGRIFATLKKSLVGLD 582

Query: 446 KSKLAILSSYAEA----TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           +    ++SSY  A    +   +T   + +    GCF+ F+  ++GF P +E+       P
Sbjct: 583 EENTKVISSYDSANALKSANEVTIATVQQFHTKGCFLTFFGKLKGFLPNAEISEVFVRRP 642

Query: 502 SSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVV 555
                +GQ V  +++      S I A+ +I+ + +    + S ++++   +LV   V   
Sbjct: 643 QDHLRLGQTVSVKLIEVDEERSRIIATCKIS-NDLAAQQKESIEEMIPGRTLVDVTVAEK 701

Query: 556 TPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 613
           T +++VV +  K  S +G I   HL+D  +E        IK G E   L++  +  +++ 
Sbjct: 702 TKDSLVVEL--KDLSLRGVIYVGHLSDARIEQNRASLKKIKIGSELKGLVIDKDVRTHVF 759

Query: 614 -LSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 667
            +S K SLI  A++  LP    D     P + +HGY+ +I E G FV F G+  G    S
Sbjct: 760 NMSLKESLIKDAKEDLLPINYQDVKSKVPTTPMHGYIKSISEKGLFVAFNGKFVGLVLPS 819

Query: 668 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            AV+ +  D+SKT+YV QSV + +L  + E  R  LSLK+
Sbjct: 820 YAVESRDVDISKTFYVNQSVTAYLLRTDDEHERFLLSLKE 859



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 130/299 (43%), Gaps = 18/299 (6%)

Query: 418  FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 477
            F +G     RV G+  +  T+T        +   +++  +A         I K+ +    
Sbjct: 1045 FPLGTAFKIRVTGIDKEHATIT-----ATGRSHSINNIKDAQPGTKVPARILKVNEKYVL 1099

Query: 478  VRFYNGVQGFAPRSELGLDPGCEP---SSMYHVGQVVKCRIMSSIPASRRINLSF---MM 531
            +   +GV+G +  ++  LD    P   +      Q+V   ++     + RI LS      
Sbjct: 1100 LDLGSGVKGISFATD-ALDDFSIPLPEAFKDKQNQIVSATVLLVDEENSRIKLSLRSPAA 1158

Query: 532  KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 591
            K   +S  + +K G++V  +V   T   V VY+ +    +  +P   L+D   +    K 
Sbjct: 1159 KTHAISSHEDLKKGAIVQALVKGTTDKGVFVYLSSN--LEAFVPVSKLSD--SYIKEWKK 1214

Query: 592  VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 651
              +P       +V  ++ S +LL+ + S +N   ++      I    + +G+V N+ + G
Sbjct: 1215 FYQPMQHVVGKVVNCDDDSRILLTLRESEVNGDLKILKGYDDIKVGDIFNGHVKNVTDFG 1274

Query: 652  CFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
             FV+      LTG A R++  D    DL+  + VG  V++ I  VN+E  +I+LSLK S
Sbjct: 1275 VFVKLDDTVNLTGLAHRTEIADEAPQDLNSLFGVGDRVKAYITKVNAEKRKISLSLKAS 1333



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 5/181 (2%)

Query: 365  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
            + +H D+K G +V+  V      G  V     ++A  P+  +S+  I +  K ++    +
Sbjct: 1163 ISSHEDLKKGAIVQALVKGTTDKGVFVYLSSNLEAFVPVSKLSDSYIKEWKKFYQPMQHV 1222

Query: 425  VFRVLGVKS-KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
            V +V+      RI +T +++ V   L IL  Y +     I +G +  +   G FV+  + 
Sbjct: 1223 VGKVVNCDDDSRILLTLRESEVNGDLKILKGYDDIKVGDIFNGHVKNVTDFGVFVKLDDT 1282

Query: 484  VQ--GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 541
            V   G A R+E+  +   + +S++ VG  VK  I       R+I+LS  +K +R S+++ 
Sbjct: 1283 VNLTGLAHRTEIADEAPQDLNSLFGVGDRVKAYITKVNAEKRKISLS--LKASRFSKEED 1340

Query: 542  V 542
            V
Sbjct: 1341 V 1341



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 13/194 (6%)

Query: 1247 KIEDLSPNMIVQGY-VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
            + ED+    +V G  +  V+SKG  + +   +  A V L ++SD  +  PE++F IG  V
Sbjct: 498  RAEDIPAGELVTGCEIVTVSSKGIELRLFGSQFKAFVPLLHISDIRLVYPERKFKIGSKV 557

Query: 1305 AGRVLSVEPLSKRVEVTLKTS-----DSRTASQSEINNLSNLH-VGDIVIGQIKRVESYG 1358
              RVLSV+    R+  TLK S     +  T   S  ++ + L    ++ I  +++  + G
Sbjct: 558  KCRVLSVDARG-RIFATLKKSLVGLDEENTKVISSYDSANALKSANEVTIATVQQFHTKG 616

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
             F+T     L G    +E+SE  V   +   R G+ V VK+++VD+E+ RI    K S  
Sbjct: 617  CFLTFFG-KLKGFLPNAEISEVFVRRPQDHLRLGQTVSVKLIEVDEERSRIIATCKIS-- 673

Query: 1419 KNDADNLQMSSEEE 1432
             ND    Q  S EE
Sbjct: 674  -NDLAAQQKESIEE 686



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 103/462 (22%), Positives = 200/462 (43%), Gaps = 71/462 (15%)

Query: 980  ENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1039
            E L   F IG  +  RIIA+      +K+ +  LSI P++L++    SK      D ++ 
Sbjct: 369  EALRHTFAIGSNIKCRIIAQLPSKSDEKTLI--LSILPNILSLESKWSK------DEALD 420

Query: 1040 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF---HIGKAVTGHVL 1096
                G++ +                ++   DS Y    L +   RF   H+ KA  G ++
Sbjct: 421  AFPVGHICQ--------------NCEVLGRDSEYIYLALDD--ERFGQVHLSKA--GELV 462

Query: 1097 SINKEKKLLRL-----VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1151
              +K +   R+     V + +Q G   K +++       ++   DI  G   ++++G   
Sbjct: 463  ESSKNRSDARVLGYNGVDKLYQLGTDPKLLELR------YLRAEDIPAG---ELVTGCEI 513

Query: 1152 LVVQ---IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1208
            + V    I   L+G      +  + +SD    Y E +F        G  VKC+VL +   
Sbjct: 514  VTVSSKGIELRLFGSQFKAFVPLLHISDIRLVYPERKFKI------GSKVKCRVLSVD-- 565

Query: 1209 VRGTFHVELSLRSSLDGMSSTNSSDLST-DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
             RG   +  +L+ SL G+   N+  +S+ D     K        S N +    V+   +K
Sbjct: 566  ARG--RIFATLKKSLVGLDEENTKVISSYDSANALK--------SANEVTIATVQQFHTK 615

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            GCF+    KL   +  + +S+ +V  P+    +G+ V+ +++ V+    R+  T K S+ 
Sbjct: 616  GCFLTFFGKLKGFLPNAEISEVFVRRPQDHLRLGQTVSVKLIEVDEERSRIIATCKISND 675

Query: 1328 RTASQSEINNLSNLHVGDIVIG-QIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-NI 1385
              A Q E  ++  +  G  ++   +       L + +++ +L G+ +V  LS+  ++ N 
Sbjct: 676  LAAQQKE--SIEEMIPGRTLVDVTVAEKTKDSLVVELKDLSLRGVIYVGHLSDARIEQNR 733

Query: 1386 ETIYRAGEKVKVKILKVDKEKRR--ISLGMKSSYFKNDADNL 1425
             ++ +     ++K L +DK+ R    ++ +K S  K+  ++L
Sbjct: 734  ASLKKIKIGSELKGLVIDKDVRTHVFNMSLKESLIKDAKEDL 775



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 19/140 (13%)

Query: 9    GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIF--HVGQ 66
            G K+   + +VNEK +++ L  G++G++ A DALD   D  I       LP  F     Q
Sbjct: 1083 GTKVPARILKVNEKYVLLDLGSGVKGISFATDALD---DFSIP------LPEAFKDKQNQ 1133

Query: 67   LVSCIVLQLDDDKKEIGKRKIWLSLR--LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
            +VS  VL +D++       +I LSLR   +  +   S E +++G ++ A VK   D G  
Sbjct: 1134 IVSATVLLVDEENS-----RIKLSLRSPAAKTHAISSHEDLKKGAIVQALVKGTTDKGVF 1188

Query: 125  LHFGLPSFTGFLPRNNLAEN 144
            ++    +   F+P + L+++
Sbjct: 1189 VYLS-SNLEAFVPVSKLSDS 1207


>gi|194378984|dbj|BAG58043.1| unnamed protein product [Homo sapiens]
          Length = 1299

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 312/1083 (28%), Positives = 521/1083 (48%), Gaps = 101/1083 (9%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196  SLEDHGYLVDIGVDGARAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256  SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316  KKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 488  ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548  FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607

Query: 527  LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +        +P+  S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608  LSFKLSCDPEPKKEPSGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
             HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S I
Sbjct: 667  SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEI 726

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 727  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
            + E  R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     
Sbjct: 787  DEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTP 845

Query: 750  GSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
            G  ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  
Sbjct: 846  GMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLE 905

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
            V +SL    +        NR+A+K ++  E       HQ   AIV+ ++++  + SL E 
Sbjct: 906  VHVSLHQDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSLAIASLVET 947

Query: 869  NHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
             H   ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   + 
Sbjct: 948  GHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKGTMRPTQ 1007

Query: 928  KRAK-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
            K ++                 KK +  +G +V   +  IKP  + +    G  G IH + 
Sbjct: 1008 KDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASH 1067

Query: 971  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKP 1017
            + DD         +  K+G+TVTAR+I      DM K+F +             ELS++P
Sbjct: 1068 ILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRP 1122

Query: 1018 SML 1020
            S L
Sbjct: 1123 SEL 1125



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 150/337 (44%), Gaps = 57/337 (16%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVL 461

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1323 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 118/512 (23%), Positives = 206/512 (40%), Gaps = 61/512 (11%)

Query: 954  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1011
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 432  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHL 485

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 486  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGL 543

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 544  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 586

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            Y  GQ VK  VL    +        LS + S D       S         G   +K + +
Sbjct: 587  YT-GQVVKVVVLNCEPSKERML---LSFKLSCDPEPKKEPS---------GHSQKKGKAI 633

Query: 1252 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1308
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 634  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 692

Query: 1309 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            L +     RV +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 693  LCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 751

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S       +L +
Sbjct: 752  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS--DCGLGDLAI 809

Query: 1428 SSEEESDEAIEEVGSYNRSSLLENSSVAVQDM 1459
            +S    ++ +EE+    RS +    SV +Q +
Sbjct: 810  TSLLLLNQCLEELQGV-RSLMSNRDSVLIQTL 840


>gi|448510670|ref|XP_003866400.1| hypothetical protein CORT_0A05730 [Candida orthopsilosis Co 90-125]
 gi|380350738|emb|CCG20960.1| hypothetical protein CORT_0A05730 [Candida orthopsilosis Co 90-125]
          Length = 1705

 Score =  378 bits (970), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 346/1296 (26%), Positives = 602/1296 (46%), Gaps = 171/1296 (13%)

Query: 571  KGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQ 625
            +G IP+ H++D    + E    + S +K         +L ++    L++ + SL+N    
Sbjct: 516  QGFIPSNHMSDIKLVYPERKFRIGSKVKG-------RLLSHKGKTPLVTVRKSLVNLEDD 568

Query: 626  QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
             + S+          +  V   +  G  V F G L  F P+++  +    D SK   +GQ
Sbjct: 569  DILSNFEDAKIGMKTNATVEKFVHGGVIVSFFGSLRAFLPKTEISETFVDDASKYLKLGQ 628

Query: 686  SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
             V   ILD+N +  R+ ++LKQS   ST                         S+   + 
Sbjct: 629  VVNVKILDINEDQKRLVVTLKQSSQLST-------------------------SQKTEIA 663

Query: 746  GFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 804
              I G SV++  V E  +  V++  E  S++ G +   QL+    E    +       +K
Sbjct: 664  NLIPGISVVQAVVVEKKNDSVLIELE-GSNLRGVVHDGQLSDGNYEQNRALFKKTEINSK 722

Query: 805  AERLV---DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYL 861
             E L+   D   +TV         S  +A K+K+      D+  ++ +   V+ V    L
Sbjct: 723  LEVLILEKDFKARTVIA---TAKKSLIEASKRKQLPTDFDDVQPNKIIKGYVKSVTNLGL 779

Query: 862  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 921
             +        +  A        +   ++F   QS+   V+++ + +   R LL +   ++
Sbjct: 780  FVCFTGRLTGLILAKYVSKTAHEDLSRRFYKYQSLACRVLSVDTENK--RFLLTIADSND 837

Query: 922  TE----TSSSKRAKKK-SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 976
            TE    T+     KK    Y  G + +A I  +K  +L ++     +GR+ +T+      
Sbjct: 838  TEGDNLTNPVDSTKKTVEDYAPGVVTKAIIKSVKGTQLNVRLADNLNGRVDVTQCFKSIK 897

Query: 977  NVVENL---FSNFKIGQTVTARIIAKSNKPD----------MKKSFLWELSIKPSMLTVS 1023
            ++ +NL    S F  G  +  ++I   +  +            K  + ELS++ + +   
Sbjct: 898  DI-KNLSQPLSGFHKGDELNVKVIGVHDAKNHTFLPITHNKANKQTIIELSLQDAKVNRK 956

Query: 1024 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1083
             + +  L    DV  G  +  +V  VD  +  ++I+  +K ++  +D + + +    F  
Sbjct: 957  HLSALKL---ADVKKGDELVAFVNNVDRGFVWVSITPSIKGRVSFMDLSDDGTIFHNFDN 1013

Query: 1084 RFHIGKAVTGHVLSINKEKKLLRLV-----LRPFQDGISDKTVDISNDNMQTFIHEGDIV 1138
            R+ IG AV   V  ++ E + L L      +R F D    KT            +   I+
Sbjct: 1014 RYPIGAAVQVKVKEVDNEHQTLALTSREHYIRSFDDVKKGKT------------YPARII 1061

Query: 1139 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1198
              + S +L  +GG V+                +  ++D L+ Y + + D   G+   ++V
Sbjct: 1062 KVKDSYVLVDLGGKVIA---------------SSFITDALNNYSD-KLD--HGFHVNEYV 1103

Query: 1199 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1258
              KVL+I    +    + +SLR                D D+  + ++  EDLS   IV+
Sbjct: 1104 GAKVLDIDADQQ---KISVSLR----------------DEDSTDRTIDSFEDLSRGDIVK 1144

Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1318
            G+VKNV++ G ++ L R + A V +S+LSD Y++  +K F   + V G++++ +    R+
Sbjct: 1145 GFVKNVSTNGVYVSLGRSVFALVRVSDLSDSYLKDWKKFFKPNQSVTGKIINCKE-EGRI 1203

Query: 1319 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSEL 1377
             +TLK S+     ++ +    +L VGDI  G + +   +G+F+ ++ T N+ GLCH SE+
Sbjct: 1204 LMTLKESEVNGELKT-MKTFDDLAVGDIFEGHVTKTTDFGVFVKLDGTVNISGLCHHSEI 1262

Query: 1378 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAI 1437
            SE+ V N+  ++  G++VKVKILK+D  K+++SLGMK+SYF +        + EE D+ +
Sbjct: 1263 SENDVKNVMALFGEGDRVKVKILKIDPSKKQLSLGMKASYFDD--------THEEVDDDV 1314

Query: 1438 E-EVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDN 1496
            E E+   +     E S       + E+ED       + +   +    E    +      N
Sbjct: 1315 EMEIAEEDEEEDDETSG------ESENEDVIIDAEEESDDDDNEEEEEGEEAETSTTESN 1368

Query: 1497 GISQNQGHTDEAKTIDEKNN-----------RHAKKKEKEEREQEIRAAEERL-LEKDAP 1544
             +S N G    A  +D+  +            ++K     +  ++ R  ++ + L   AP
Sbjct: 1369 ALSTN-GFDWTASILDQTEDHDSSSDDEDFMSNSKSSRPRKSRKQTRVEDKTIDLNTRAP 1427

Query: 1545 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1604
            ++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE EK+NIW+
Sbjct: 1428 QSVADFERLLIGNPNSSILWMNYMSFNLQLSEVDKARQIGERALETINYREEQEKMNIWI 1487

Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1664
            A  NLEN +G   +E++  VF++A QY D   +H  L  +   +E+   A EL   M KK
Sbjct: 1488 ALLNLENTFGT--DESLDAVFKKACQYMDSFIIHQKLASILIMSEKYDQARELFKAMGKK 1545

Query: 1665 FKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1723
            F  +   W+     LL Q      + V+ RAL  LP+  HI+ + + A LE+  G  ++ 
Sbjct: 1546 FGQNVLTWVLYGSFLLDQDLNNEARQVLARALQVLPKRDHIEVVRKFAQLEYAKGDVEQA 1605

Query: 1724 RSMFEGILSEYPKRTDLWSIYLDQEIRL-------------GDVDLIRGLFERAI-SLSL 1769
            RS+FEG++++ PKR DLW++Y+DQEI+               +   I  LFER I +  +
Sbjct: 1606 RSLFEGLVADAPKRIDLWNVYIDQEIKYGNGGDGDDDNKDSSNKQQIESLFERVIENKKV 1665

Query: 1770 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
              K+ KF F K+L YE+  G+E+ +  VK KA+EYV
Sbjct: 1666 SRKQAKFFFNKWLAYEEGQGDEKMVGKVKAKAIEYV 1701



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 169/691 (24%), Positives = 311/691 (45%), Gaps = 59/691 (8%)

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
           L +IF +G  +   V++ +       K++I +S+   ++   L  E +  G +L+  VKS
Sbjct: 176 LKSIFQIGSWLKAKVVETETS----NKKRIEMSIEPEIVNAHLEKEDIVSGNILSCSVKS 231

Query: 118 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRK----VVYLSS 173
           IEDHG IL  G+   + F+    L      +++P    QG+V +     K    ++ +  
Sbjct: 232 IEDHGLILESGIEGLSAFVSNKEL---KNAEIEPSTCAQGLVFTTTVVSKPSGRIITVKP 288

Query: 174 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
              + +K +T      S+D +  G +V   V  + ++G+         GT++   +Q  F
Sbjct: 289 AVPSTTKKLTPITTISSVDAIQVGAIVDALVSDVTDSGIGARVFGLVDGTINFSDVQ-IF 347

Query: 234 PTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLLHNRAPPSHVK------VGDI 285
                K+ +     V ARI+ +      R + L+L  + L      S  +      VG +
Sbjct: 348 SVEELKHKFAIGSNVKARIMAILQKGGVRKLVLSLVSHSLQMGDGTSRTEALEAFPVGHV 407

Query: 286 YDQSKVVRVDR-----GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 340
           +D  +V+  D+      LGL         ST   +  S++ +    K    Y   S  + 
Sbjct: 408 FDVVEVLGSDQEYIFVKLGL---------STFGQIHNSNIDDS---KTLIDYSVSSKHKA 455

Query: 341 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG----KVIAVDSFGAIVQFPGG 396
           R++ +  ++ L     K S  E    +  D+  G ++      KV+  DS G  V+    
Sbjct: 456 RVIAYNMVDNLYVLTFKPSTIEAPYLSVRDIPVGTLLPNCEITKVLP-DSGGIQVKLLDD 514

Query: 397 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSY 455
            +   P  HMS+ ++V P +KF++G+++  R+L  K K   VT +K+LV      ILS++
Sbjct: 515 FQGFIPSNHMSDIKLVYPERKFRIGSKVKGRLLSHKGKTPLVTVRKSLVNLEDDDILSNF 574

Query: 456 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 515
            +A   + T+  + K    G  V F+  ++ F P++E+      + S    +GQVV  +I
Sbjct: 575 EDAKIGMKTNATVEKFVHGGVIVSFFGSLRAFLPKTEISETFVDDASKYLKLGQVVNVKI 634

Query: 516 MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGV-----VDVVTPNAVVVYVIAKGYS 570
           +      +R+ ++ + + +++S     ++ +L+ G+     V V   N  V+  +     
Sbjct: 635 LDINEDQKRLVVT-LKQSSQLSTSQKTEIANLIPGISVVQAVVVEKKNDSVLIELEGSNL 693

Query: 571 KGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSA- 624
           +G +    L+D       A   K+ I    E   +L+L  D ++  ++ +AK SLI ++ 
Sbjct: 694 RGVVHDGQLSDGNYEQNRALFKKTEINSKLE---VLILEKDFKARTVIATAKKSLIEASK 750

Query: 625 -QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 683
            +QLP+D   + PN ++ GYV ++   G FV F GRLTG             DLS+ +Y 
Sbjct: 751 RKQLPTDFDDVQPNKIIKGYVKSVTNLGLFVCFTGRLTGLILAKYVSKTAHEDLSRRFYK 810

Query: 684 GQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            QS+   +L V++E  R  L++  S  +  D
Sbjct: 811 YQSLACRVLSVDTENKRFLLTIADSNDTEGD 841



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 132/579 (22%), Positives = 233/579 (40%), Gaps = 97/579 (16%)

Query: 871  SIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 930
            +I ++ V  ++ ++   K F  G +V A +MA+       +L+L L + S      + R 
Sbjct: 338  TINFSDVQIFSVEELKHK-FAIGSNVKARIMAILQKGGVRKLVLSLVSHSLQMGDGTSRT 396

Query: 931  KKKSSYDVGSLVQA-EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 989
            +   ++ VG +    E+       + +K G+   G+IH + ++D K+ +      ++ + 
Sbjct: 397  EALEAFPVGHVFDVVEVLGSDQEYIFVKLGLSTFGQIHNSNIDDSKTLI------DYSVS 450

Query: 990  QTVTARIIAKSNKPDMKKSFLWELSIKPSM-----LTVSEIGSKLLFEECDVSIGQRVTG 1044
                AR+IA  N  D     L+ L+ KPS      L+V +I    L   C+++       
Sbjct: 451  SKHKARVIA-YNMVDN----LYVLTFKPSTIEAPYLSVRDIPVGTLLPNCEIT------- 498

Query: 1045 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS------- 1097
               KV  +   + +      Q FI  +     +L   +R+F IG  V G +LS       
Sbjct: 499  ---KVLPDSGGIQVKLLDDFQGFIPSNHMSDIKLVYPERKFRIGSKVKGRLLSHKGKTPL 555

Query: 1098 INKEKKLLRL----VLRPFQDG-ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1152
            +   K L+ L    +L  F+D  I  KT    N  ++ F+H                GG+
Sbjct: 556  VTVRKSLVNLEDDDILSNFEDAKIGMKT----NATVEKFVH----------------GGV 595

Query: 1153 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1212
            +V     L   +  TE+    V D  S Y             GQ V  K+L+I+   +  
Sbjct: 596  IVSFFGSLRAFLPKTEISETFVDDA-SKY----------LKLGQVVNVKILDINEDQK-- 642

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM-IVQGYVKNVTSKGCFI 1271
              + ++L+          SS LST   T      +I +L P + +VQ  V    +    I
Sbjct: 643  -RLVVTLK---------QSSQLSTSQKT------EIANLIPGISVVQAVVVEKKNDSVLI 686

Query: 1272 ML-SRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
             L    L   V    LSDG  E      K+  I   +   +L  +  ++ V  T K S  
Sbjct: 687  ELEGSNLRGVVHDGQLSDGNYEQNRALFKKTEINSKLEVLILEKDFKARTVIATAKKSLI 746

Query: 1328 RTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
              + + ++  +  ++    I+ G +K V + GLF+      L GL     +S+   +++ 
Sbjct: 747  EASKRKQLPTDFDDVQPNKIIKGYVKSVTNLGLFVCFTG-RLTGLILAKYVSKTAHEDLS 805

Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
              +   + +  ++L VD E +R  L +  S    + DNL
Sbjct: 806  RRFYKYQSLACRVLSVDTENKRFLLTIADSN-DTEGDNL 843



 Score = 47.4 bits (111), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 130/306 (42%), Gaps = 20/306 (6%)

Query: 226  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDI 285
            IFH        N+ N Y     V  ++  VD   + + LT   + + +      VK G  
Sbjct: 1007 IFH--------NFDNRYPIGAAVQVKVKEVDNEHQTLALTSREHYIRSF---DDVKKGKT 1055

Query: 286  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 345
            Y  +++++V     +L+D+    +++     I+D       KL+  +     V  ++L  
Sbjct: 1056 Y-PARIIKVKDSY-VLVDLGGKVIASSF---ITDALNNYSDKLDHGFHVNEYVGAKVLDI 1110

Query: 346  -RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
                + ++  +    + +  + +  D+  G +VKG V  V + G  V     V AL  + 
Sbjct: 1111 DADQQKISVSLRDEDSTDRTIDSFEDLSRGDIVKGFVKNVSTNGVYVSLGRSVFALVRVS 1170

Query: 405  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLI 463
             +S+  +    K FK    +  +++  K + RI +T K++ V  +L  + ++ +     I
Sbjct: 1171 DLSDSYLKDWKKFFKPNQSVTGKIINCKEEGRILMTLKESEVNGELKTMKTFDDLAVGDI 1230

Query: 464  THGWITKIEKHGCFVRFYNGVQ--GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 521
              G +TK    G FV+    V   G    SE+  +      +++  G  VK +I+   P+
Sbjct: 1231 FEGHVTKTTDFGVFVKLDGTVNISGLCHHSEISENDVKNVMALFGEGDRVKVKILKIDPS 1290

Query: 522  SRRINL 527
             ++++L
Sbjct: 1291 KKQLSL 1296


>gi|367010384|ref|XP_003679693.1| hypothetical protein TDEL_0B03530 [Torulaspora delbrueckii]
 gi|359747351|emb|CCE90482.1| hypothetical protein TDEL_0B03530 [Torulaspora delbrueckii]
          Length = 1715

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 347/1218 (28%), Positives = 589/1218 (48%), Gaps = 182/1218 (14%)

Query: 651  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710
            GC + F G + GF P S+  +           +GQ+V   ILDV+ E  RI      +C 
Sbjct: 610  GCHLLFFGGVRGFLPNSEISEVFVKRPEDHSRLGQTVMVKILDVDEERARII----ATCK 665

Query: 711  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 768
             S+D +  Q+  +  +K+ + ++          V+  +     +  V E N+ G+  V+ 
Sbjct: 666  VSSDEAEEQKEAI--DKMVLGRT---------MVDVTVAEKTKDSLVVEMNNVGLRGVIY 714

Query: 769  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 828
                SD    I  ++     +  GS + A ++D     ++ + +LK   I   ++A +N+
Sbjct: 715  VGHLSD--SRIEQNRAQLKKIRIGSELNALVIDKDVRNQVFNATLKESLI---KDAQNNQ 769

Query: 829  QAQKKKRKREASKDLGVHQTVNAIVE---IVKEN--YLVLSLPEY---NHSIGYASVSDY 880
                 +  +E      +H  + +I +    V  N  ++ + LP Y   +  + +A     
Sbjct: 770  LPVTYEDIKEKKLTTAMHGYIKSISDKGLFVAFNGKFVGMVLPSYAVESRDVDFA----- 824

Query: 881  NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA---------- 930
                   K F   QSV A +  L +     R LL  K   E +  SS +A          
Sbjct: 825  -------KAFYINQSVAAYL--LRTDDANQRFLLTFK---EPKDKSSDKAASLAAINPVD 872

Query: 931  ---KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK---SNVVENLFS 984
               K+   + +G ++ A+I  +K  +L +      +GRI I+EV D     SN  E L  
Sbjct: 873  KSIKRLEDFKLGKVIDAKIKGVKKNQLNVILADNLYGRIDISEVFDSYEAISNPKEPL-G 931

Query: 985  NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1035
              K    +  ++I   +    K          S + EL+++ SM+  S    + +    D
Sbjct: 932  GMKKDDIIRVKVIGNHDVRGHKFLPITHTVTNSTVLELTMRKSMINDSNCKVQSI---ED 988

Query: 1036 VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGKAVT 1092
            V++GQ V G+V  Y  +N W  LT+S  LKA++ + D   + S+  + F+ +F +G A+ 
Sbjct: 989  VAVGQEVLGFVNNYASNNLW--LTVSPTLKAKISVFDLTDDSSKYSKNFEEQFPLGSALK 1046

Query: 1093 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI-----LS 1147
              V  I  E   + +  R          V I+ D     +  GD +  +I KI     L 
Sbjct: 1047 VSVKGIESEHGFITVTGRS-------HAVQIATD-----VKVGDKLPAKIVKINEKYILL 1094

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
             +GG VV I         F        S PL+   EG  +        Q +   V+ I  
Sbjct: 1095 NLGGDVVGISFAPDALDDF--------SVPLNVAFEGMVN--------QIIPATVVSIDS 1138

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   ++LSLRS+                +   + ++  +D+    +VQ  VK VT K
Sbjct: 1139 E---NDKIKLSLRSA----------------NPKTREIKSHKDIKQGDVVQALVKRVTDK 1179

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ LS  L+A V +S LSD +++  +K +   + V G+V++ E  S R+ +TL+ S+ 
Sbjct: 1180 GIFVYLSTNLEAFVPVSKLSDSFLKEWKKFYKPMQCVVGKVINSENDS-RILLTLRESEV 1238

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIE 1386
                   + N  ++ VGDI  G +K V  +G+F+ +++T N+ GL H SE+++   +++ 
Sbjct: 1239 -NGKLHVLKNYDDIKVGDIFEGNVKNVTDFGVFVKLDDTVNITGLAHRSEIADTAPEDLS 1297

Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYF-KND-----ADNLQMSSEEESDEAIEEV 1440
            +++  G+++K  ++KV+ +K++ISL +K+S+F K D     A+   +  + ++DEA+E+V
Sbjct: 1298 SLFGNGDRLKAYVIKVNPDKKQISLSLKASHFSKQDNGEKKAETQDVVEDNDADEAMEQV 1357

Query: 1441 GSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQ 1500
              YN      N S A  D++M+ ++             S P        ++P    G+S 
Sbjct: 1358 -VYNH-----NESDAESDVEMDYQE-------------SAPA-------KKPQQSEGLSL 1391

Query: 1501 NQGHTDEAKTIDEKNNRHAKKKEKEEREQEIR--------AAEERLLE--KDAPRTPDEF 1550
            + G    A  +D+ +       +++  E              E++ ++    AP +  +F
Sbjct: 1392 SAGFDWTASILDQAHEDEESSDDEDFTETNKSKRHRKKKHVVEDKTIDISTRAPESVVDF 1451

Query: 1551 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1610
            ERL+  +PNSS +W+ YMAF L +++VEKAR IAERAL+TI+ REE EKLNIW+A  NLE
Sbjct: 1452 ERLIMGNPNSSVIWMNYMAFQLQLSEVEKAREIAERALKTISFREEGEKLNIWIALLNLE 1511

Query: 1611 NEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSC 1669
            N +G   +E + +VF+RA QY D   +H  LL +Y+ +E+   A EL     KKF     
Sbjct: 1512 NTFGT--DETLEEVFKRACQYMDSFTIHNKLLSIYQMSEKFDQAAELFKATAKKFGSEKV 1569

Query: 1670 KVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE 1728
             +WL   + LL Q Q +  ++++  AL +L +  HI+ + + A LEF  G A+RGRS+FE
Sbjct: 1570 SIWLAWGEFLLSQNQIQEARSLLSNALKALAKRSHIEVVRKFAQLEFAKGDAERGRSLFE 1629

Query: 1729 GILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV 1788
            G++++ PKR DLW++YLDQEI+ G+   +  +FER I+  +  K+ KF F K+L++E+S 
Sbjct: 1630 GLMADAPKRIDLWNVYLDQEIKAGEKKKVENIFERVITKKITRKQAKFFFNKWLQFEESH 1689

Query: 1789 GEEERIEYVKQKAMEYVE 1806
             + +  EYVK KA+E+ E
Sbjct: 1690 EDLKSAEYVKSKAIEFAE 1707



 Score =  180 bits (457), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 284/1205 (23%), Positives = 515/1205 (42%), Gaps = 159/1205 (13%)

Query: 58   LPTIFHVGQLVSCIVL---QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 114
            L   F +GQ + C V+     D ++K+  K++I LS+  S +    + E + +   +   
Sbjct: 194  LKNYFQLGQWLRCSVVLNSTFDTERKKNQKKRIELSIAPSDV-NPFTEEDLDKHTAIQCS 252

Query: 115  VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 174
            VKS EDHG  L  G+  FTGF+P+  L     ++  PG +  G +    ++ + V ++ D
Sbjct: 253  VKSTEDHGATLDIGISGFTGFIPKKALPNFEQLE--PGSVFLGNISK--KSGRAVTVNLD 308

Query: 175  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 234
             +  +  +T+     SID +VPG  +    + + +NG++       +G +    L+N F 
Sbjct: 309  FNAKNSKITQ---VSSIDAVVPGQAIDLLCEDVTKNGIIGKAFGLISGFLGTSQLRN-FS 364

Query: 235  TTNWKNDYNQHKKVNARI---LFVDPTSRAVGLTLNPYLLH------NRAPPSHVKVGDI 285
                K+ +     +  R+   L     ++ + L++ P++L        +       VG  
Sbjct: 365  LEELKHKFAVGSSIRCRVIASLLNRDATKVLILSILPHILSLETKLLEKESLESFPVGYK 424

Query: 286  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK----KYKEGSCVRVR 341
             D   V+  D              S   YV +    EE + ++      +    S V  R
Sbjct: 425  LDSCAVLGRD--------------SEFLYVAVD---EERIGQVHSSKIGEVNHQSSVAAR 467

Query: 342  ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV-KGKVIAVDSFGAIVQ-FPGGVKA 399
            +LG+  ++ L          +       D+  G ++ K +V+ V S G  ++ F     A
Sbjct: 468  VLGYNEVDRLYELSTDPEVLKLKYLRPKDIPVGTIIPKCEVVTVSSSGIQLKLFNDQFTA 527

Query: 400  LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV--KSKLAILSSYA 456
              P  H+S+ ++V P +KFK+G+++  ++L V  +  I VT KK+LV  +  + ++SSYA
Sbjct: 528  FVPPLHISDTKLVYPERKFKIGSKVKGKILNVDGRGHIFVTLKKSLVNLEEDIEVVSSYA 587

Query: 457  EATDRLI------THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 510
             A  R I      T   +   +  GC + F+ GV+GF P SE+       P     +GQ 
Sbjct: 588  TA--RKIQEINQKTVATVQAFQAKGCHLLFFGGVRGFLPNSEISEVFVKRPEDHSRLGQT 645

Query: 511  VKCRIMSSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVI 565
            V  +I+       RI  +  +      E     D +V   ++V   V   T +++VV + 
Sbjct: 646  VMVKILDVDEERARIIATCKVSSDEAEEQKEAIDKMVLGRTMVDVTVAEKTKDSLVVEMN 705

Query: 566  AKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA--KYSLIN 622
              G  +G I   HL+D  +E        I+ G E + L V+D +  N + +A  K SLI 
Sbjct: 706  NVGL-RGVIYVGHLSDSRIEQNRAQLKKIRIGSELNAL-VIDKDVRNQVFNATLKESLIK 763

Query: 623  SAQ--QLP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
             AQ  QLP    D       + +HGY+ +I + G FV F G+  G    S AV+ +  D 
Sbjct: 764  DAQNNQLPVTYEDIKEKKLTTAMHGYIKSISDKGLFVAFNGKFVGMVLPSYAVESRDVDF 823

Query: 678  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
            +K +Y+ QSV + +L  +    R  L+ K+    S+D            K A L +    
Sbjct: 824  AKAFYINQSVAAYLLRTDDANQRFLLTFKEPKDKSSD------------KAASLAAINPV 871

Query: 738  GSELKWVEGFIIGSVIEGKVH--ESNDFGVV--------VSFEEHSDVYGFITHHQLAGA 787
               +K +E F +G VI+ K+   + N   V+        +   E  D Y  I++ +    
Sbjct: 872  DKSIKRLEDFKLGKVIDAKIKGVKKNQLNVILADNLYGRIDISEVFDSYEAISNPKEPLG 931

Query: 788  TVESGSVIQAAIL---DVAKAERL-----------VDLSLKTVFIDRFREANSNRQAQKK 833
             ++   +I+  ++   DV   + L           ++L+++   I+     +SN + Q  
Sbjct: 932  GMKKDDIIRVKVIGNHDVRGHKFLPITHTVTNSTVLELTMRKSMIN-----DSNCKVQ-- 984

Query: 834  KRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ--KFPQKQF 890
                 + +D+ V Q V   V     N L L++ P     I    ++D +++  K  ++QF
Sbjct: 985  -----SIEDVAVGQEVLGFVNNYASNNLWLTVSPTLKAKISVFDLTDDSSKYSKNFEEQF 1039

Query: 891  LNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 950
              G ++  +V  + S    G +         T T  S   +  +   VG  + A+I +I 
Sbjct: 1040 PLGSALKVSVKGIESEH--GFI---------TVTGRSHAVQIATDVKVGDKLPAKIVKIN 1088

Query: 951  PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1010
               + L  G    G     +  DD S  +   F    + Q + A +++  ++ D  K   
Sbjct: 1089 EKYILLNLGGDVVGISFAPDALDDFSVPLNVAFEGM-VNQIIPATVVSIDSENDKIK--- 1144

Query: 1011 WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILD 1070
              LS++ +     EI S       D+  G  V   V +V ++   + +S +L+A  F+  
Sbjct: 1145 --LSLRSANPKTREIKS-----HKDIKQGDVVQALVKRVTDKGIFVYLSTNLEA--FVPV 1195

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN-DNMQ 1129
            S    S L+E+++ +   + V G V++   + ++L L LR  +  ++ K   + N D+++
Sbjct: 1196 SKLSDSFLKEWKKFYKPMQCVVGKVINSENDSRIL-LTLR--ESEVNGKLHVLKNYDDIK 1252

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
                 GDI  G +  +     G+ V++    ++ G  H +E+ +    D  S +  G  D
Sbjct: 1253 V----GDIFEGNVKNVTD--FGVFVKLDDTVNITGLAHRSEIADTAPEDLSSLFGNG--D 1304

Query: 1188 PLSGY 1192
             L  Y
Sbjct: 1305 RLKAY 1309



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 111/258 (43%), Gaps = 25/258 (9%)

Query: 1177 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1236
            PL   D     P   +  G  VK K+L     V G  H+ ++L+ SL         +L  
Sbjct: 531  PLHISDTKLVYPERKFKIGSKVKGKIL----NVDGRGHIFVTLKKSL--------VNLEE 578

Query: 1237 DVDTPGKHL--EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1294
            D++    +    KI++++   +    V+   +KGC ++    +   +  S +S+ +V+ P
Sbjct: 579  DIEVVSSYATARKIQEINQKTV--ATVQAFQAKGCHLLFFGGVRGFLPNSEISEVFVKRP 636

Query: 1295 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG-QIKR 1353
            E    +G+ V  ++L V+    R+  T K S      Q E   +  + +G  ++   +  
Sbjct: 637  EDHSRLGQTVMVKILDVDEERARIIATCKVSSDEAEEQKEA--IDKMVLGRTMVDVTVAE 694

Query: 1354 VESYGLFITIENTNLVGLCHVSELSEDHVD----NIETIYRAGEKVKVKILKVDKEKRRI 1409
                 L + + N  L G+ +V  LS+  ++     ++ I R G ++   ++  D   +  
Sbjct: 695  KTKDSLVVEMNNVGLRGVIYVGHLSDSRIEQNRAQLKKI-RIGSELNALVIDKDVRNQVF 753

Query: 1410 SLGMKSSYFKNDADNLQM 1427
            +  +K S  K DA N Q+
Sbjct: 754  NATLKESLIK-DAQNNQL 770


>gi|395502216|ref|XP_003755479.1| PREDICTED: protein RRP5 homolog [Sarcophilus harrisii]
          Length = 1865

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 373/1399 (26%), Positives = 635/1399 (45%), Gaps = 158/1399 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLL 58
            + ++ GM+L G V E+N  +LVI LP GL G  +A   +DA    L  +++  E  ++L 
Sbjct: 78   EALTEGMRLLGCVKEINNLELVISLPNGLWGYVQATNISDAYTKKLSEQLDQEEPLEDLA 137

Query: 59   P--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
            P   +F  G LV C+V  +    K   K+ + LSL    + + LS  +++ GM+LT  V 
Sbjct: 138  PLSELFPPGLLVRCVVSSITSASK---KKSVKLSLNPKDVNRVLSPASLKPGMLLTGTVH 194

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  ++ G  L  ++  +      V L
Sbjct: 195  SVEDHGYLVDIGVMGTKAFLPWQKEQEYVKQKNKGTKLRVGQYLNCLIEEVKGNGGSVLL 254

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S+    VS  +  + +  ++D L+PG++V  +VQ +  +G+ LSF + FTG VD  HL  
Sbjct: 255  STIQSVVSAAIATEEQNWTLDNLLPGLVVKAQVQKVTPHGLTLSFFSSFTGLVDFMHLD- 313

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS---HVKVGDIYDQ 288
                +     Y Q + V A IL V P ++ V LTL    L    P +   H  +G + + 
Sbjct: 314  ----SKKAGHYFQTQMVRACILSVHPRTKCVRLTLRSSFLQAGRPITRLCHNLIGAVLND 369

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V       G    +    +   AY  I  +++ E     +K+K G+  + R++ +  +
Sbjct: 370  VPVQGFFAKAGATFRLKDGSL---AYARIMHLSQTEKSFKPEKFKPGNMHKCRVIDYSPM 426

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   LK S  E     + D+ PG VVK KV A+ S+G IV+    +K L P  H+++
Sbjct: 427  DDLALLSLKTSIIEAPFLRYHDLHPGQVVKAKVFALRSYGMIVKVTEQIKGLVPTLHLAD 486

Query: 409  FEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
             +I  P KK+++  E+  RVL    ++K++ +T KKTLV+S L  L+SY +A   L THG
Sbjct: 487  VQIRNPQKKYRLQDEVKCRVLTCDPENKKLLMTLKKTLVESNLPALTSYKQAKPELQTHG 546

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I+ I+  GC V+FYN V+G  P+ ELG  P   P  +++VGQVVK  +++S P   R+ 
Sbjct: 547  FISSIKDSGCVVKFYNDVRGLVPQRELGAQPISTPGEVFYVGQVVKVTVLNSEPEQERML 606

Query: 527  LSFMM-------KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            LSF +        P +  +   +K+G LV   V   T   + V ++     +  +PT HL
Sbjct: 607  LSFRLLSDKETEGPAQSQKKATIKVGQLVDVKVKKKTEKGLEVSILPNNI-RALLPTTHL 665

Query: 580  ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPN 637
            +D + ++ ++ S ++ G    ++L L +   +++L  K +LI++ +  Q P   S   P 
Sbjct: 666  SDSVNNSQLLYSWLRAGDVLHRVLCLSHSDGHIILCRKPALISAVESGQDPKVFSEFQPG 725

Query: 638  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
             ++ G+V  I   G FV+F   L+G AP+S   D     +S  +  GQ+V + + +V  E
Sbjct: 726  MLLTGFVKTIKAYGVFVQFPSGLSGLAPKSALSDKFVTTVSDHFVEGQTVVAKVTNVYEE 785

Query: 698  TGRITLSLKQSCCSSTDASFMQEHFL---LEE--KIAMLQSSKHNGSELKWVE---GFII 749
              R+ LSL+ S     D +      L   LEE   +  L SS+ +       E   G ++
Sbjct: 786  KERMLLSLRLSDVCQEDTAVSSLALLSQWLEELQGVRSLMSSRDSMLTQTLAEITPGLLM 845

Query: 750  GSVIEGKVHESNDFGVVVSFEEHSDVYGFI----THHQLAGATVESGSVIQAAILDVAKA 805
              V++     S+D  ++ S      V G +     +HQ  G  ++ G   +A +L V   
Sbjct: 846  DLVVQDM---SSDGSLMFS---SGSVPGLVLKASRYHQ-GGKVMDPGQRTKAVVLHVDTL 898

Query: 806  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 865
            +  V +SL+   ++R      ++Q +K    R             A++E +++ + + SL
Sbjct: 899  KSEVHVSLRQELVNR-----KSKQLKKNTEHR-------------AVIEHLEKTFAIGSL 940

Query: 866  PEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVM-ALPS---------SSTAGRLLL 914
             E    + +   S  N T +F  ++   GQ V   +  A PS         SS   R   
Sbjct: 941  METGQLVAFPVTSHLNDTFRFDSEKLQVGQRVSLIIKSAKPSDIGLFLAVESSVKKRTPA 1000

Query: 915  LLKAISET---ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 971
            L  A  E    E        +K +  +G +V   +  +K   + +    G  G IH +++
Sbjct: 1001 LPLADPEPAGEEPGVMSSLLEKPTLPIGEMVTGTVKSVKATHVVVTLENGLVGCIHASQI 1060

Query: 972  NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLF 1031
             DD     +   +  K+G+ VTAR+I +      K      +S   S  TVSE+  +   
Sbjct: 1061 LDDVPLGTQPT-AKLKVGKPVTARVIGQRTLLTHKT---LPISHPSSAQTVSELSIRSSE 1116

Query: 1032 EECDVSI------------------GQRVTGYV--YKVDNEWALLTISRHLKAQLFILDS 1071
             E D+SI                  GQ V  ++  + V  +W  + I+  ++ ++  L +
Sbjct: 1117 LEKDISIDPSTHCSSPTEKLKQYLPGQTVICFMRKFNVIKKWLEVEITPDIRGRIPQLLT 1176

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            +     L+  +++F IG+A++  V+     K  L L L             I    ++  
Sbjct: 1177 SLSFKVLKHPEKKFKIGQALSATVVGPESSKGFLTLSL-------------IGPHRLE-- 1221

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
              EG++  GR+ K++    GL V       G+V    L +         Y E    PL G
Sbjct: 1222 --EGEVAMGRVVKVIPK-EGLQVLFPFGTIGKVSIFHLSD--------SYLEA---PLEG 1267

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            +   + V+C VL     V     + LSLR      S TN   +   ++ P   +  I+++
Sbjct: 1268 FHPEKIVRCCVLSTKDPV-----LTLSLRQ-----SRTNPR-MKNKIEDP--EVNSIKNI 1314

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRV 1308
                 ++GYV+ V   G    +   L  +V   +++  ++          P GKL++ +V
Sbjct: 1315 KEGQHLRGYVEAVKKLGVHFRIGPTLVGRVKYRHVTKYFLSDKTLYRTYLPEGKLLSAKV 1374

Query: 1309 LSVEPLSKRVEVTLKTSDS 1327
            L +    K V ++    D+
Sbjct: 1375 LRLNRKQKLVYLSFLPKDT 1393



 Score =  280 bits (715), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 137/290 (47%), Positives = 201/290 (69%), Gaps = 6/290 (2%)

Query: 1525 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1583
            ++ E+E+   E  L++ +  P T D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1576 QQAEKELTRIETALMDPNWQPETADDFDRLVLSSPNSSILWLRYMAFHLHATEIEKARAV 1635

Query: 1584 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1643
            AERAL++I+ REE EKLN+WVA  NLEN YG+  +E + KVF+RA+QYC+P KV   L  
Sbjct: 1636 AERALKSISFREEQEKLNVWVALMNLENMYGS--KETLSKVFERAVQYCEPLKVFFQLAD 1693

Query: 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1702
            +Y ++E+ + A+E+  +M+K+F+    VW++    LL++ + E    ++ RA   LP+ +
Sbjct: 1694 IYSKSEKYQAAEEVYNQMLKRFRQEKTVWVKYGSFLLQRGKAEACHDLLPRAFSCLPQKE 1753

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
            H+  IS+ A LEF  G  +RG++MFE  L+ YPKRTD+WSIY+D  I+ G    +R  FE
Sbjct: 1754 HVDVISKFAQLEFYQGDGERGKAMFESTLNSYPKRTDVWSIYIDMLIKFGSQKEVRDAFE 1813

Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES--TLA 1810
            R + LSL PK+MKF FK+YL+YEK  G  E ++ VK+KA+ YVES  TLA
Sbjct: 1814 RVVHLSLSPKRMKFFFKRYLDYEKQHGTAETVQAVKEKALNYVESRNTLA 1863



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 157/707 (22%), Positives = 279/707 (39%), Gaps = 97/707 (13%)

Query: 710  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
            C   D S M +  LL  K +++++      +L        G V++ KV     +G++V  
Sbjct: 418  CRVIDYSPMDDLALLSLKTSIIEAPFLRYHDLH------PGQVVKAKVFALRSYGMIVKV 471

Query: 770  EEHSDVYGFITHHQLAGATVESGSV-------IQAAILDVAKAERLVDLSLKTVFIDRFR 822
             E   + G +    LA   + +          ++  +L      + + ++LK   ++   
Sbjct: 472  TEQ--IKGLVPTLHLADVQIRNPQKKYRLQDEVKCRVLTCDPENKKLLMTLKKTLVESNL 529

Query: 823  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 882
             A ++         ++A  +L  H  +++I    K++  V+    YN   G     +   
Sbjct: 530  PALTSY--------KQAKPELQTHGFISSI----KDSGCVVKF--YNDVRGLVPQRELGA 575

Query: 883  QKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGS 940
            Q    P + F  GQ V  TV  L S     R+LL  + +S+ ET    +++KK++  VG 
Sbjct: 576  QPISTPGEVFYVGQVVKVTV--LNSEPEQERMLLSFRLLSDKETEGPAQSQKKATIKVGQ 633

Query: 941  LVQAEITEIKPLELRLKFGI---GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
            LV  ++   K  E  L+  I        +  T ++D  +N  + L+S  + G  V  R++
Sbjct: 634  LVDVKVK--KKTEKGLEVSILPNNIRALLPTTHLSDSVNNS-QLLYSWLRAGD-VLHRVL 689

Query: 998  AKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQRVTGYVYKVDNEWALL 1056
              S+           L  KP++++  E G    +F E     G  +TG+V  +      +
Sbjct: 690  CLSHSDGH-----IILCRKPALISAVESGQDPKVFSE--FQPGMLLTGFVKTIKAYGVFV 742

Query: 1057 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1116
                 L        SA     +      F  G+ V   V ++ +EK+ + L LR   D  
Sbjct: 743  QFPSGLSG--LAPKSALSDKFVTTVSDHFVEGQTVVAKVTNVYEEKERMLLSLR-LSDVC 799

Query: 1117 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1176
             + T   S   +  ++ E   V   +S   S +   + +I P L   +   ++ +     
Sbjct: 800  QEDTAVSSLALLSQWLEELQGVRSLMSSRDSMLTQTLAEITPGLLMDLVVQDMSSDGSLM 859

Query: 1177 PLSGYDEGQFDPLSGY-------DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1229
              SG   G     S Y       D GQ  K  VL +  T++   HV  SLR  L    + 
Sbjct: 860  FSSGSVPGLVLKASRYHQGGKVMDPGQRTKAVVLHVD-TLKSEVHV--SLRQEL---VNR 913

Query: 1230 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1289
             S  L  + +    H   IE L     +             +M + +L A  + S+L+D 
Sbjct: 914  KSKQLKKNTE----HRAVIEHLEKTFAIGS-----------LMETGQLVAFPVTSHLNDT 958

Query: 1290 YVESPEKEFPIGKLVA-----------GRVLSVEPLSKRVEVTLKTSDSRTASQ-----S 1333
            +    EK   +G+ V+           G  L+VE   K+    L  +D   A +     S
Sbjct: 959  FRFDSEK-LQVGQRVSLIIKSAKPSDIGLFLAVESSVKKRTPALPLADPEPAGEEPGVMS 1017

Query: 1334 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1380
             +     L +G++V G +K V++  + +T+EN  LVG  H S++ +D
Sbjct: 1018 SLLEKPTLPIGEMVTGTVKSVKATHVVVTLEN-GLVGCIHASQILDD 1063


>gi|146412582|ref|XP_001482262.1| hypothetical protein PGUG_05282 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1674

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 389/1496 (26%), Positives = 685/1496 (45%), Gaps = 183/1496 (12%)

Query: 371  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
            ++PG++V   V  +   G   +  G V     L ++ E+++     KF +G  +  RV+ 
Sbjct: 301  IQPGIIVDALVAEITKEGITTKVFGMVDGTISLLNIGEYDLDSLNHKFTIGNSIKARVIA 360

Query: 431  VKSKRITVTHKKTLVKSKLA-ILS-SYAEATDRLITH--GWI-TKIEKHGC---FVRFYN 482
            V  K  T    K LV S L  ILS    E TD L     G++  ++E  G    ++    
Sbjct: 361  VLLKGGT----KKLVLSILPRILSLDSQENTDALEAFPIGFVFDQVEVIGLDSNYIFVST 416

Query: 483  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS--------SIPASRRINLSFMMKPT 534
            G   +  +  +      +    Y VG   K R++         ++    +I  +  M P 
Sbjct: 417  GTSSYHGQVHISKINQEKVIDDYFVGSKHKARVIGLNKFEGLLTLTMDPKIIDTKFMVPL 476

Query: 535  RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMK 590
            ++   + +  G ++      V P+   + V         +P EH++D    + E    + 
Sbjct: 477  QIPVGEYINGGEIIK-----VLPDGAGIQVKIFNDFDAFVPPEHMSDVRLVYPERKYKVG 531

Query: 591  SVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIE 649
            S IK         VL    S + ++ K +L+N    ++ S+             V   + 
Sbjct: 532  SKIKGR-------VLKVHGSKIFITLKKTLVNIEDDEVLSNFELAEIGLKTPATVEKFVH 584

Query: 650  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
             G  V F G L  F P+++  +    D       GQ+V   I+D +    R+ ++LKQ+ 
Sbjct: 585  NGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIMDRDETQQRLIVTLKQND 644

Query: 710  CS----STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHESNDFG 764
             +    S  +S +    ++E  I  ++ SK   S +  +EG  + G +  G++ + N   
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASI--VEKSKDKDSVIVEIEGSNLRGVIYAGQLSDGN--- 699

Query: 765  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 824
                +E+   +Y            +++G  ++A +L+     R V LS K  FI+     
Sbjct: 700  ----YEQTRALY----------KKIQAGDKLEAVVLERDMKTRSVILSAKQSFIN----- 740

Query: 825  NSNRQAQKKKRKREASKDLGVHQTV-NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 883
                   K  +      D+ V   V    ++ V    L ++       +  A  +  N  
Sbjct: 741  -----GAKNNQIPSQFSDVTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPN 795

Query: 884  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE--------TSSSKRAKKKSS 935
            +   K+F   QSV   V+ L + +   R LL L +  ++E          S+K  K  + 
Sbjct: 796  EDILKRFYKNQSVSCRVIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTK--KLITD 851

Query: 936  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVT 993
            Y  G+  QA+I  IK  +L ++      GR+ IT+  +  S++ +     S F   + ++
Sbjct: 852  YTPGAKTQAKIKSIKGTQLNVQLADNLQGRLDITQCFEKWSDIKDKNQPLSQFHKDEILS 911

Query: 994  ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG---SKLLFEECDVSIGQRVTGYVYKVD 1050
             R++      D K      +S + S  T+ E+       + E  DV +G     +V  + 
Sbjct: 912  VRVLGYH---DAKNHTFLPISHRKSKNTILELTLLEKDPITEIKDVKVGSEHVAFVNNLA 968

Query: 1051 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1110
              +  +++S  +K ++  +D + E S  ++ + R  IG A+   V  I++E K + L  R
Sbjct: 969  RGFVWVSMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNIILTSR 1028

Query: 1111 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1170
                     TV    D     +        R+ K+L     ++V++   +    + T   
Sbjct: 1029 KH-------TVTKFED-----VELNKQYPARVLKVLPSF--VLVELAHDVVASSYIT--- 1071

Query: 1171 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1230
                 D L+ Y     +     D   +    VL + +  +    + + LR        TN
Sbjct: 1072 -----DALNDYSSALNEVFHAND---YTTATVLAVDKDSK---KISVLLR--------TN 1112

Query: 1231 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1290
             +     VD   K +  +EDL    +V+G+VKNV + G ++ L R +   V +S+LSD Y
Sbjct: 1113 KA-----VD---KVINSVEDLQRGDVVKGFVKNVANNGVYVSLGRSVHGLVRVSDLSDSY 1164

Query: 1291 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL---SNLHVGDIV 1347
            ++  +K F   + V G+V++ +    RV +TLK S+       E+N L    +L  G++ 
Sbjct: 1165 LKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESEV----NGELNVLKKFEDLKEGEVY 1219

Query: 1348 IGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1406
             G +++V  +G+F+ ++ T N+ GLCH SE++++   +++ ++  G++VKVKIL ++ EK
Sbjct: 1220 EGSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEK 1279

Query: 1407 RRISLGMKSSYFKNDA-------DNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDM 1459
            +++SLGMK SYF  +A       D+++M+  EE+  +  E    +   ++E +  A  D+
Sbjct: 1280 KQLSLGMKVSYFAPEATQNEDSDDDVEMAESEEATPSASESSDESDEEIVEGAFEADSDV 1339

Query: 1460 DMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHA 1519
            D + E+  ++V                      D   G+S N G    A  +D+      
Sbjct: 1340 DHDDEETSNVV--------------------AEDSGMGLSTN-GFDWTASILDQAQESDE 1378

Query: 1520 K-------KKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1572
                     K+K++R  ++   +   +   AP++  +FER++  SPNSS +W+ YM+F L
Sbjct: 1379 SSDDEDFVNKKKKKRSTKVVEDKTADINTRAPQSVSDFERMLIGSPNSSVLWMNYMSFQL 1438

Query: 1573 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1632
             ++++EKAR I ERAL+TIN REE EKLNIW+A  NLEN +    +E++   F+R+ QY 
Sbjct: 1439 QLSEIEKAREIGERALKTINYREEQEKLNIWIALLNLENTFDT--KESLEDTFRRSCQYM 1496

Query: 1633 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVV 1691
            +P  +H  L  +Y  +E+   A  L   MIKKF  +  VW+     LL +Q  + V   +
Sbjct: 1497 EPLTMHQKLASIYTLSEKFDEATRLYKVMIKKFSKNVSVWVAYASYLLDRQMNDEVHEAL 1556

Query: 1692 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1751
             +A+ +LP  + I+ + + A LEF  G  ++GRS+FEG++++ PKR DLW++YLDQEI+L
Sbjct: 1557 AKAMQALPSKESIEVVKKFAQLEFTKGDPEQGRSLFEGLMADAPKRIDLWNVYLDQEIKL 1616

Query: 1752 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             D   +  LFER I+  L  K+ KF F K+L+YE+   +E+    VK KA EYVE+
Sbjct: 1617 NDKSKVENLFERLITKKLTKKQAKFFFTKWLKYEEDQNDEKSGARVKAKAAEYVEA 1672



 Score =  171 bits (434), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 173/683 (25%), Positives = 314/683 (45%), Gaps = 46/683 (6%)

Query: 54  EDNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 110
           +DN LP   +IF  G+ +   V + +  + +  K++I  ++    + + +  E +  G +
Sbjct: 159 KDNELPDLQSIFKAGEWLRAKVTEAELSQSK--KKRIQFTIEPENVNESIEDEDLIPGNL 216

Query: 111 LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP---GLLLQGVVRSIDRTRK 167
           L   V S+ED G IL+ G+   +GF+    L+ N+ ID++    G ++   + +   TR 
Sbjct: 217 LQCSVVSVEDRGVILNTGVSGKSGFISNKELS-NANIDLQSLSEGYVMMTSIAAKPTTRT 275

Query: 168 VVYLSSDPDTVSKCVTKD-LKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
           +   S  P T+S  + K+ +  IS +D + PG++V   V  I + G+         GT+ 
Sbjct: 276 I---SLRPATLSVSLKKNKVSNISSVDAIQPGIIVDALVAEITKEGITTKVFGMVDGTIS 332

Query: 226 IFHLQNTFPTTNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLL-----HNRAPPS 278
           + ++   +   +  + +     + AR++ V     ++ + L++ P +L      N     
Sbjct: 333 LLNI-GEYDLDSLNHKFTIGNSIKARVIAVLLKGGTKKLVLSILPRILSLDSQENTDALE 391

Query: 279 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 338
              +G ++DQ +V+ +D      + + +   S    V IS + +E   K+   Y  GS  
Sbjct: 392 AFPIGFVFDQVEVIGLDSNY---IFVSTGTSSYHGQVHISKINQE---KVIDDYFVGSKH 445

Query: 339 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPG 395
           + R++G    EGL T  +     +        +  G  + G ++I V  D  G  V+   
Sbjct: 446 KARVIGLNKFEGLLTLTMDPKIIDTKFMVPLQIPVGEYINGGEIIKVLPDGAGIQVKIFN 505

Query: 396 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSS 454
              A  P  HMS+  +V P +K+KVG+++  RVL V   +I +T KKTLV      +LS+
Sbjct: 506 DFDAFVPPEHMSDVRLVYPERKYKVGSKIKGRVLKVHGSKIFITLKKTLVNIEDDEVLSN 565

Query: 455 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 514
           +  A   L T   + K   +G  V F+  ++ F P++E+      +       GQ V  R
Sbjct: 566 FELAEIGLKTPATVEKFVHNGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVR 625

Query: 515 IMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG-------VVDVVTPNAVVVYVIAK 567
           IM      +R  L   +K   V++     + S+V G       +V+       V+  I  
Sbjct: 626 IMDRDETQQR--LIVTLKQNDVTKAQQSAVSSVVPGKTIVEASIVEKSKDKDSVIVEIEG 683

Query: 568 GYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQ 625
              +G I    L+D + E    +   I+ G + + +++  D ++ +++LSAK S IN A+
Sbjct: 684 SNLRGVIYAGQLSDGNYEQTRALYKKIQAGDKLEAVVLERDMKTRSVILSAKQSFINGAK 743

Query: 626 --QLPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 682
             Q+PS  S +   + V+ GY+ ++   G FV F G+LTG      A      D+ K +Y
Sbjct: 744 NNQIPSQFSDVTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPNEDILKRFY 803

Query: 683 VGQSVRSNILDVNSETGRITLSL 705
             QSV   ++ +++E  R  LSL
Sbjct: 804 KNQSVSCRVIRLDNENKRFLLSL 826



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 203/928 (21%), Positives = 390/928 (42%), Gaps = 112/928 (12%)

Query: 513  CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 572
             R +S  PA+  ++L    K + +S  D ++ G +V  +V  +T   +   V   G   G
Sbjct: 273  TRTISLRPATLSVSLK-KNKVSNISSVDAIQPGIIVDALVAEITKEGITTKVF--GMVDG 329

Query: 573  TIPT----EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP 628
            TI      E+  D L H   + + IK        ++L   +  L+LS    +++   Q  
Sbjct: 330  TISLLNIGEYDLDSLNHKFTIGNSIKARV---IAVLLKGGTKKLVLSILPRILSLDSQEN 386

Query: 629  SDASHIHPNSVVHGYVCNIIET-GCFVRFLGRLTGFAPRSKAVDGQRADLSKT---YYVG 684
            +DA    P     G+V + +E  G    ++   TG +     V   + +  K    Y+VG
Sbjct: 387  TDALEAFP----IGFVFDQVEVIGLDSNYIFVSTGTSSYHGQVHISKINQEKVIDDYFVG 442

Query: 685  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
               ++ ++ +N   G +TL++        D   +   F++  +I +      NG E+  +
Sbjct: 443  SKHKARVIGLNKFEGLLTLTM--------DPKIIDTKFMVPLQIPV--GEYINGGEI--I 490

Query: 745  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 804
            +    G+ I+ K+   NDF   V  E  SDV       +      + GS I+  +L V  
Sbjct: 491  KVLPDGAGIQVKIF--NDFDAFVPPEHMSDVRLVYPERKY-----KVGSKIKGRVLKVHG 543

Query: 805  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 864
            ++  + L    V I+   E  SN +  +   K  A+ +  VH    AIV       L   
Sbjct: 544  SKIFITLKKTLVNIED-DEVLSNFELAEIGLKTPATVEKFVHN--GAIVSFF--GNLRAF 598

Query: 865  LPEYNHSIGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETE 923
            LP+  + I    V D        K FL  GQ+V   +M      T  RL++ LK   + +
Sbjct: 599  LPK--NEISETFVKD-------AKDFLKKGQTVNVRIM--DRDETQQRLIVTLK---QND 644

Query: 924  TSSSKRAKKKSSYDVGSLVQAEITE--------IKPLELRLKFGIGFHGRIHITEVNDDK 975
             + ++++   S     ++V+A I E        I  +E     G    G I+  +++D  
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASIVEKSKDKDSVIVEIE-----GSNLRGVIYAGQLSDGN 699

Query: 976  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1035
                  L+   + G  + A ++ +    DMK   +  LS K S +  ++  +++  +  D
Sbjct: 700  YEQTRALYKKIQAGDKLEAVVLER----DMKTRSVI-LSAKQSFINGAK-NNQIPSQFSD 753

Query: 1036 VSIGQRV-TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            V++  +V TGY+  V N    +     L   +    +   P+E  +  +RF+  ++V+  
Sbjct: 754  VTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPNE--DILKRFYKNQSVSCR 811

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG- 1151
            V+ ++ E K  R +L    +  S+   ++ N  D+ +  I +        +KI S  G  
Sbjct: 812  VIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTKKLITDYTPGAKTQAKIKSIKGTQ 869

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
            L VQ+  +L GR+  T+    C        D+ Q  PLS + + + +  +VL        
Sbjct: 870  LNVQLADNLQGRLDITQ----CFEKWSDIKDKNQ--PLSQFHKDEILSVRVLGYHDAKNH 923

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
            TF + +S R S + +      +L+     P   + +I+D+        +V N+     ++
Sbjct: 924  TF-LPISHRKSKNTIL-----ELTLLEKDP---ITEIKDVKVGSEHVAFVNNLARGFVWV 974

Query: 1272 MLSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
             +S  +  +V   +LSD     E  E   PIG  +  +V  ++   K +   + TS   T
Sbjct: 975  SMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNI---ILTSRKHT 1031

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE-NTNLVGLCHVSELSEDHVDNIETI 1388
             ++ E   L+  +   +    +K + S   F+ +E   ++V   ++++   D+   +  +
Sbjct: 1032 VTKFEDVELNKQYPARV----LKVLPS---FVLVELAHDVVASSYITDALNDYSSALNEV 1084

Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + A +     +L VDK+ ++IS+ ++++
Sbjct: 1085 FHANDYTTATVLAVDKDSKKISVLLRTN 1112



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 125/299 (41%), Gaps = 40/299 (13%)

Query: 152  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG---ISIDLLVPGMMVSTRVQSIL 208
            G  ++  V+ ID   K + L+S   TV+K    +L       +  ++P  ++      ++
Sbjct: 1006 GAAIKAKVKQIDEEHKNIILTSRKHTVTKFEDVELNKQYPARVLKVLPSFVLVELAHDVV 1065

Query: 209  ENGVMLSFLTYFTGTVD-IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 267
             +  +   L  ++  ++ +FH           NDY       A +L VD  S+ + + L 
Sbjct: 1066 ASSYITDALNDYSSALNEVFH----------ANDY-----TTATVLAVDKDSKKISVLLR 1110

Query: 268  PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVA 321
                 N+A    +   +   +  VV+     G + ++ +  V      S    V +SD++
Sbjct: 1111 T----NKAVDKVINSVEDLQRGDVVK-----GFVKNVANNGVYVSLGRSVHGLVRVSDLS 1161

Query: 322  EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVK 378
            +  ++  +K +K+   V  +++  +  EG     LK S   G   ++    D+K G V +
Sbjct: 1162 DSYLKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESEVNGELNVLKKFEDLKEGEVYE 1220

Query: 379  GKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
            G V  V  FG  V+  G   V  LC    +++ + V     F  G  +  ++LG+ S++
Sbjct: 1221 GSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEK 1279


>gi|310789617|gb|EFQ25150.1| S1 RNA binding domain-containing protein [Glomerella graminicola
            M1.001]
          Length = 1772

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 367/1397 (26%), Positives = 646/1397 (46%), Gaps = 183/1397 (13%)

Query: 483  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK----PTR 535
            G+ GF   S +    +D   E S  Y VG   + R++          LSF  +    P  
Sbjct: 467  GISGFVHISRVKDGKVDALYETSGPYKVGSEHRGRVVGYNSLDGMFLLSFQQQVLDQPFI 526

Query: 536  VSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 590
              ED  V +G +VSG V+  ++  N V  ++  +A+G S G +   HLAD  L+H    +
Sbjct: 527  RLED--VPVGEVVSGKVEKVIIGENGVSGLIVKLAEGIS-GYVHDSHLADVKLQHP---E 580

Query: 591  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 649
               + G     ++L +      L L+ K +L+NS   +  +   +       G + +   
Sbjct: 581  KKFREGITVKARVLSVRPRKRQLRLTLKKTLVNSDAPIVKNYDEVEVGMQTPGTITSFTA 640

Query: 650  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
             G  + F G + GF P S+  +    D  + + +GQ+V  ++LDVN E  R+ +S K   
Sbjct: 641  GGAQLEFFGGIRGFLPVSQMSEAYIKDPREHFRIGQAVSVHVLDVNPEERRMVVSCKDPS 700

Query: 710  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
                        F L+++ A+              +   +G ++  KV +  +  V V  
Sbjct: 701  A-----------FGLDKQAAL--------------KALKVGDIVSAKVSQKTEDEVFVDL 735

Query: 770  EEHSDVYGFITHH---------QLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFID 819
            EE        T H         Q A   +  G+ + +  +LD  +  R V LS K  F+ 
Sbjct: 736  EESGLKAIIRTGHLSDKSASKTQAAWKRINVGNTLSELVVLDKNERRRAVILSQKPSFV- 794

Query: 820  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 879
                     +A K  +    ++D  V     A V  +    + +       +I   +   
Sbjct: 795  ---------EAGKNGKLLSNAEDATVGTVAPAYVREIGPYAVYVQFGGSLTAILPKTKLP 845

Query: 880  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA--------K 931
             + Q+         QS+   +++  S     R+++   +  E E  +++ A        K
Sbjct: 846  KDAQEKEAFGMRKHQSIEVKIVS--SKPEQNRIIVAPASADEPEPVAAESAVNSVDDSIK 903

Query: 932  KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLFSNFKIG 989
              +   +G+++ A++T +K  +L +K      GRI +++  D   ++   +N     K  
Sbjct: 904  TINDVALGTILNAKVTSVKDTQLNVKVADNIQGRIDVSQFYDKWDDITNRKNPLQKVKAN 963

Query: 990  QTVTARIIAKSNKPDMK--------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQR 1041
            + +  R I   +  + +           L E + K S L   E+    L     + +G  
Sbjct: 964  EIIRVRAIGIHDSKNYRFLPFSHRSSHSLIEFTAKKSDLEAKEVE---LLSYDKIEVGSS 1020

Query: 1042 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1101
               +V         + +S  ++ ++ I+D + + S     ++ F +G A+   VLS++ E
Sbjct: 1021 HVAFVNNHGKNCLWVNLSPSVRGRISIMDVSDDLSLAGNLEKHFPVGSALKVRVLSVDAE 1080

Query: 1102 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1161
            K  L L  R      S  + +++ D+++  +     + GR++K+      ++V++G  + 
Sbjct: 1081 KGHLDLSSRS-----STGSTEVTWDSLKKNV----ALPGRVTKVTDR--SVMVKLGDSVS 1129

Query: 1162 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1221
            G VH  +L +         YDE        Y++G+ ++  V+E+ ++ +    + LS R 
Sbjct: 1130 GPVHLVDLSD--------NYDEAN---TLKYNKGEIIRVSVVEVDKSNK---RLRLSTRP 1175

Query: 1222 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1281
            S   +SST     S  VD   + + K+  +S   I++G+VKNVT KG F+ L   + A V
Sbjct: 1176 SRI-LSST-----SPVVD---REITKLSQISSGDIIRGFVKNVTDKGVFVQLGGTVSALV 1226

Query: 1282 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1341
             +SNLSD Y++  +  F + +LV GRV++V+    +VE++LK S         +    ++
Sbjct: 1227 KISNLSDRYIKDWKGNFQVDQLVKGRVINVDAAINQVELSLKASVVENDYTPPVT-YKDM 1285

Query: 1342 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
              G IV G++++VE +G FI ++N+ N+ GLCH SE++E  V++   +Y  G+ VK K+L
Sbjct: 1286 KEGQIVTGKVRKVEEFGAFIVVDNSLNVSGLCHRSEMAEKPVEDARRLYSEGDVVKAKVL 1345

Query: 1401 KVDKEKRRISLGMKSSYFKNDAD--NLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQD 1458
             VD EKRRI+  ++ S+F  D+D  ++   +E +SDE                      D
Sbjct: 1346 SVDDEKRRITFSLRPSHFDEDSDMEDVNGGAELDSDE----------------------D 1383

Query: 1459 MDMESEDGG-SLVLAQIES---------RASVPPLEVNLDDEQPDMDNGISQNQGHTD-E 1507
             D+E  DGG  L ++  ++          A     + + + ++ D   G   + G  D  
Sbjct: 1384 SDIEMGDGGVQLTISGTDNIDDSDEEDESAEEDEDDSDAEMDEVDTATGKGLSGGKYDWT 1443

Query: 1508 AKTIDEKNNRHAKKKEKEERE-----------QEIRAAEERLLEKDAPRTPDEFERLVRS 1556
                D++++  +  K K+ +            Q  R A+   L+   P+T  ++ERL+  
Sbjct: 1444 GDAFDDESDNESTGKSKKSKATGKKEKKKSGIQVDRTAD---LDAHGPQTATDYERLLLG 1500

Query: 1557 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1616
             P+SS +WI+YMA  + ++++ KAR +AERA++TINIRE+ EKLN+W+AY NLE  YG  
Sbjct: 1501 EPDSSQLWIEYMALQMKISELAKAREVAERAIKTINIREQTEKLNVWIAYLNLEVAYGT- 1559

Query: 1617 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRR 1675
             + +  +VF+RA QY D ++VH  L  +Y +  + K AD++   ++ KFK  S KVW   
Sbjct: 1560 -KASTEEVFKRACQYNDEQEVHERLASIYIQCGKLKQADDVFQSLVAKFKSKSPKVWENY 1618

Query: 1676 VQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGIL 1731
               L     + +  +A++ RA  +L      + ++    LEFK  NG A+RGR+ FE IL
Sbjct: 1619 AHFLHVTMNEPDRARALLPRATQALEERHTAQLMASFGALEFKSPNGDAERGRTTFETIL 1678

Query: 1732 SEYPKRTDLWSIYLDQEIRLGDVDL--IRGLFERAI-SLSLPPKKMKFLFKKYLEYEKSV 1788
            + +PKR DLW+   D EI   + D   IR +FER   +  L PKK    FK++ E+E+ +
Sbjct: 1679 ATWPKRFDLWNQLADLEISAAEPDTTAIRDVFERGTKAKGLKPKKAMKWFKRWAEWEQKL 1738

Query: 1789 GEEERIEYVKQKAMEYV 1805
              + R + V  KA E+V
Sbjct: 1739 SPKGR-DKVMAKAQEWV 1754



 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 296/1286 (23%), Positives = 548/1286 (42%), Gaps = 135/1286 (10%)

Query: 9    GMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL-------- 57
            G  + G +  ++   L + LP  L G   +A  +D ++  L+ +++A ++          
Sbjct: 139  GSLVLGQITHIDSVQLTVALPNNLTGHVSIASISDTINSKLEKDVDAADEESDDDDGDDD 198

Query: 58   ----LPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 112
                L T+F VGQ V   VL   ++      KR+I LSLR +    G++ + +     L 
Sbjct: 199  EEIDLQTMFKVGQYVRAHVLSTAEESGSGKAKRRIELSLRPADANSGITGDDIVAYTTLM 258

Query: 113  AYVKSIEDHGYILHFGLPS-FTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVY 170
            A + S++DHGY +  G+     GFL +  +  +     ++PG +   VV+S+  T  VV 
Sbjct: 259  ASIASVQDHGYEMDLGIDGDLKGFLAKKEVGPDMDEASLRPGAVCLCVVKSV--TGIVVQ 316

Query: 171  LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
            LS+DP  +           +I+  +PG +    +  +   G+    L +   T D+ H  
Sbjct: 317  LSTDPLKLGNTSLVASTAPTINSFLPGSLADVLLTEVTSRGLQGKLLGHLPVTADLIHSG 376

Query: 231  NTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLH-----------NRAPP 277
                  + +  Y    +V ARI+   P +R   +G++L P++++            +AP 
Sbjct: 377  VGPDGVDLEAKYTVGSRVKARIICNFPAAREPKLGISLLPHIVNLQPKSSGKGSRAKAPL 436

Query: 278  SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKE 334
              + +    ++  V +V+  +GL +D     +S   +V IS V + +V  L +    YK 
Sbjct: 437  DLLPIASFVEKCTVRKVEPEIGLYVDAGVPGIS--GFVHISRVKDGKVDALYETSGPYKV 494

Query: 335  GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-----DSFGA 389
            GS  R R++G+  L+G+     +    +       DV  G VV GKV  V        G 
Sbjct: 495  GSEHRGRVVGYNSLDGMFLLSFQQQVLDQPFIRLEDVPVGEVVSGKVEKVIIGENGVSGL 554

Query: 390  IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS 447
            IV+   G+       H+++ ++  P KKF+ G  +  RVL V+ ++  + +T KKTLV S
Sbjct: 555  IVKLAEGISGYVHDSHLADVKLQHPEKKFREGITVKARVLSVRPRKRQLRLTLKKTLVNS 614

Query: 448  KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 507
               I+ +Y E    + T G IT     G  + F+ G++GF P S++      +P   + +
Sbjct: 615  DAPIVKNYDEVEVGMQTPGTITSFTAGGAQLEFFGGIRGFLPVSQMSEAYIKDPREHFRI 674

Query: 508  GQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVV 562
            GQ V   ++   P  RR+ +S    P+    D       +K+G +VS  V   T + V V
Sbjct: 675  GQAVSVHVLDVNPEERRMVVS-CKDPSAFGLDKQAALKALKVGDIVSAKVSQKTEDEVFV 733

Query: 563  YVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYS 619
             +   G  K  I T HL+D     T      I  G    +L+VLD NE    ++LS K S
Sbjct: 734  DLEESGL-KAIIRTGHLSDKSASKTQAAWKRINVGNTLSELVVLDKNERRRAVILSQKPS 792

Query: 620  LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
             + + +  +L S+A      +V   YV  I     +V+F G LT   P++K     +   
Sbjct: 793  FVEAGKNGKLLSNAEDATVGTVAPAYVREIGPYAVYVQFGGSLTAILPKTKLPKDAQEKE 852

Query: 678  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
            +      QS+   I+    E  RI ++      +S D           E +A   +    
Sbjct: 853  AFGMRKHQSIEVKIVSSKPEQNRIIVA-----PASADEP---------EPVAAESAVNSV 898

Query: 738  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH----------SDVYGFITHHQLAGA 787
               +K +    +G+++  KV    D  + V   ++           D +  IT+ +    
Sbjct: 899  DDSIKTINDVALGTILNAKVTSVKDTQLNVKVADNIQGRIDVSQFYDKWDDITNRKNPLQ 958

Query: 788  TVESGSVIQAAILDV--AKAERLVDLSLKTVF-IDRFREANSNRQAQKKKRKREASKDLG 844
             V++  +I+   + +  +K  R +  S ++   +  F    S+ +A++ +       ++G
Sbjct: 959  KVKANEIIRVRAIGIHDSKNYRFLPFSHRSSHSLIEFTAKKSDLEAKEVELLSYDKIEVG 1018

Query: 845  VHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMA 902
                  A V    +N L ++L P     I    VS D +     +K F  G ++   V++
Sbjct: 1019 SSHV--AFVNNHGKNCLWVNLSPSVRGRISIMDVSDDLSLAGNLEKHFPVGSALKVRVLS 1076

Query: 903  LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 962
            +   +  G L L  ++ + +   +    KK  +      +   +T++    + +K G   
Sbjct: 1077 V--DAEKGHLDLSSRSSTGSTEVTWDSLKKNVA------LPGRVTKVTDRSVMVKLGDSV 1128

Query: 963  HGRIHITEVND--DKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPS 1018
             G +H+ +++D  D++N ++     +  G+ +   ++   KSNK          LS +PS
Sbjct: 1129 SGPVHLVDLSDNYDEANTLK-----YNKGEIIRVSVVEVDKSNK-------RLRLSTRPS 1176

Query: 1019 ML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1076
             +  + S +  + + +   +S G  + G+V  V ++   + +   + A + I  S     
Sbjct: 1177 RILSSTSPVVDREITKLSQISSGDIIRGFVKNVTDKGVFVQLGGTVSALVKI--SNLSDR 1234

Query: 1077 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1136
             +++++  F + + V G V++++     + L L+      +D T  ++  +M+    EG 
Sbjct: 1235 YIKDWKGNFQVDQLVKGRVINVDAAINQVELSLKASVVE-NDYTPPVTYKDMK----EGQ 1289

Query: 1137 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1196
            IV G++ K+      +VV    ++ G  H +E+    V            D    Y EG 
Sbjct: 1290 IVTGKVRKVEEFGAFIVVDNSLNVSGLCHRSEMAEKPVE-----------DARRLYSEGD 1338

Query: 1197 FVKCKVLEISRTVRGTFHVELSLRSS 1222
             VK KVL +    R    +  SLR S
Sbjct: 1339 VVKAKVLSVDDEKR---RITFSLRPS 1361


>gi|50294291|ref|XP_449557.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528871|emb|CAG62533.1| unnamed protein product [Candida glabrata]
          Length = 1706

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 351/1273 (27%), Positives = 599/1273 (47%), Gaps = 185/1273 (14%)

Query: 601  QLLVLDNESSNLLLSAKYSLINSAQ-------QLPSDASHIHPNSVVHGYVCNIIETGCF 653
            ++L +DN   +++ + K SL+N  +          +  S  + N    G V +    GC 
Sbjct: 544  RILNVDNHG-HIIATMKKSLVNDEELEKPVIESFETAKSIKNKNEKTVGTVQSFNGHGCV 602

Query: 654  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
            + F G +TGF P+S+  +           +GQ+V+  +L+V+ E  RI ++    C  S 
Sbjct: 603  IMFFGGVTGFLPKSEVSEVFVKRAEDHLRLGQTVQVKVLEVDEERRRIIVT----CKVSN 658

Query: 714  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE-- 771
            + +  Q+  +   KI                      S+IE  V E     V+V   +  
Sbjct: 659  EEAQQQKSIIESLKIGQ--------------------SIIETVVVEKTKDSVIVEIPDVG 698

Query: 772  -HSDVY-GFITHHQLAGATVES-----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 824
                +Y G I+  ++     E      GS +   ++D     ++ +LSLK   +   ++A
Sbjct: 699  IRGVIYVGHISDERIEQCRAEIKKIRIGSKLTGLVIDKDSRTQIFNLSLKKSLM---KDA 755

Query: 825  NSNRQAQKKKRKREASKDLGVHQTVNAIVEI-----VKENYLVLSLPEYNHSIGYASVSD 879
             + R         +  K   +H  V +I            ++ L LP Y        +  
Sbjct: 756  QNKRLPTTFAEITKFKKTDPLHGYVKSISSTGVFVAFTGKFVGLVLPSYAVESRQVDI-- 813

Query: 880  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK------K 933
                   +K F + QSV A +  L +     R LL LKA    + + +  A+       K
Sbjct: 814  -------EKAFYSNQSVTAYL--LRTDDDNERFLLTLKAPKVEKAAETISAENIIDTSIK 864

Query: 934  SSYDV--GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIG 989
            S  D+  G ++ A+I  +K  +L +      HGR+ I+EV D+ +++ +  +  S++K  
Sbjct: 865  SVKDIKLGKILDAKIKGVKKNQLNIILADNVHGRVDISEVFDNYNDIKDKKHPLSHYKAN 924

Query: 990  QTVTARIIA----KSNKP-----DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1040
              V  +II     KS+K      +  K  ++EL++KPS L   ++      +  D+++G 
Sbjct: 925  DKVRVKIIGHHDLKSHKSLPITHNFVKGTVFELTMKPSQLKSKDVKE---LDIRDITVGD 981

Query: 1041 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP-SELQEFQRRFHIGKAVTGHVLSIN 1099
             +  +V    N    LT++  +KA+L I D + E    ++  +  F +G  +  +V   +
Sbjct: 982  EIIAFVNNYQNSTLWLTVTPTIKAKLSIFDLSEETLMNIKNVEDDFPLGSVLKVNVTGKD 1041

Query: 1100 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE-GDIVGGRISKILSGVGGLVVQIGP 1158
            + K +L++  R  +          S D+++   H  G IV      +L  +   +  I  
Sbjct: 1042 QNKSILQVTQRNGKIN--------SIDDLKVGGHTIGKIVKVTPKYLLIELENKITGIST 1093

Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
             L     FTE        PL        D +    E +FVK K   I+  +     V+L 
Sbjct: 1094 ALEALNDFTE--------PL--------DQVFAGKENEFVKAK---ITSVIADEKKVQLQ 1134

Query: 1219 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
            L           + D ST V     H     DL    +V G VK VT KG F+ L + ++
Sbjct: 1135 L-----------AEDEST-VQKITSH----SDLKVGEVVNGLVKTVTDKGLFVFLGKSVE 1178

Query: 1279 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1338
            A V +S LSD Y++  +K +   + V G+++S      R+ +TL+ ++        + N 
Sbjct: 1179 AFVPVSKLSDSYLKEWKKFYKPMQPVVGKIVSCNE-DDRILLTLRETEV-NGDLKVLKNY 1236

Query: 1339 SNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            S++  GDI  G ++ V  +G+F+ ++NT N+ GL H++E++++  ++I++I+  G++VK 
Sbjct: 1237 SDIKPGDIFNGTVRNVTDFGVFVKLDNTANVTGLAHITEIADEVPEDIQSIFGVGDRVKA 1296

Query: 1398 KILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQ 1457
             +LK + EK+++SL +K+S+F  +    + +  +     I+E                 Q
Sbjct: 1297 YVLKSNPEKKQLSLSLKASHFNTNETITEKAESQPQPRKIDED----------------Q 1340

Query: 1458 DMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQP---------DMDNGISQNQGHTDEA 1508
            D  M+ E     V+   ES AS        DDE+            D G+S + G     
Sbjct: 1341 DELMDDE-----VVYNSESEAS--------DDEEAHSSKSTTVISNDGGLSLSAGFDWTT 1387

Query: 1509 KTIDEKNNRHAKKKEK----EEREQEIRAAEERLLEKD--------APRTPDEFERLVRS 1556
              +D+ N     + ++    E +  + +  + + L +D        AP +  +FERL+  
Sbjct: 1388 SILDQANASSDSESDEEDFMESKRSKNKKKKSKNLVEDKTIDINTRAPESVADFERLIIG 1447

Query: 1557 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1616
            +PNSS +W+ YMAF L +++++KAR +AERAL+TIN REE EKLNIW+A  NLEN +G+ 
Sbjct: 1448 NPNSSVIWMNYMAFQLQLSEIDKARELAERALKTINYREEAEKLNIWIAMLNLENTFGS- 1506

Query: 1617 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRR 1675
             EE +  VF R+ QY D   +H  L+G+Y+ +E+   A EL     KKF      +W+  
Sbjct: 1507 -EETLEDVFTRSCQYMDSFTMHSKLIGIYQLSEKFDKASELFKITTKKFGSEKTSIWVSW 1565

Query: 1676 VQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1734
               +L Q + + V  ++  AL SLP+  HI+ + + A LEF  G  +RGRS+FEG+L++ 
Sbjct: 1566 ASFVLSQNEPDQVGTILSSALKSLPKRNHIEVVRKFAQLEFSEGNPERGRSLFEGLLADA 1625

Query: 1735 PKRTDLWSIYLDQEIRLGD-VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1793
            PKR D+W++YLDQEI+  D    +  LFER I + +  K+ KF F K+L++E+S  +E+ 
Sbjct: 1626 PKRIDIWNVYLDQEIKQKDNKSRVEELFERVIKMKITRKQAKFFFNKWLQFEESNNDEKM 1685

Query: 1794 IEYVKQKAMEYVE 1806
             +YVK KA EYVE
Sbjct: 1686 TDYVKAKASEYVE 1698



 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 189/765 (24%), Positives = 340/765 (44%), Gaps = 92/765 (12%)

Query: 5   NISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL--------------D 47
           N+  G  L G +  + + DL I    GL G   L   ++ L  +L              D
Sbjct: 107 NVKEGTILLGQIDSITKNDLRITFTDGLSGFVDLTHISEQLTSLLEDIDEDMDSDSKEDD 166

Query: 48  NEIEANED----NLLPTI---FHVGQLVSCIVLQLDDDKKEIGKRK--IWLSLRLSLLYK 98
            E E+++D      LP +   F VGQ + C V +    K +  K+K  I L++  S++  
Sbjct: 167 AEYESSDDESEQKSLPNLRHYFKVGQWLRCAVTKNTALKPKNAKQKKRIELTIEPSVV-N 225

Query: 99  GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQG 157
              +E + +  ++   V+SIEDHG  L  G+PS TGF+ + +       ++KPG + +  
Sbjct: 226 NFDVEDINKNTIIQCSVESIEDHGATLDLGVPSLTGFIAKKDCTNFD--ELKPGSVFISC 283

Query: 158 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
           + +  DR+   + +S D  +V K     +   SID ++PG +V    + I ++G++    
Sbjct: 284 ITKKTDRS---IVVSQDF-SVKKNKMTSIS--SIDSVLPGQVVDLLCEEITDSGIVGKVF 337

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL---FVDPTSRAVGLTLNPYLLHNR 274
              +  +   HLQ TF   + K+ ++    +  RIL         R + L+  P+++   
Sbjct: 338 GSISAFIGKPHLQ-TFSEEDIKHKFSLGSNIPCRILASVINKSGDRVLILSTLPHVISLN 396

Query: 275 APPSHVK------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD-----VAEE 323
                ++      +G I D+S V   D              S+  Y+ ISD     V + 
Sbjct: 397 NTLGSIESLEAFPIGFIIDESVVKGRD--------------SSYLYLAISDKFIGRVHQS 442

Query: 324 EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVI 382
            + ++ K+ K    ++ R++G+   + +          +       D+  G V    +++
Sbjct: 443 NLGEIIKQDK----LKSRVIGYDVADCIFELTTDPEKLKLKYIRSKDIPVGEVFNNCEIL 498

Query: 383 AVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTH 440
              S G  ++  GG   A  P  H+S+  ++ P +KFK+ ++   R+L V +   I  T 
Sbjct: 499 KASSSGVELKLLGGQFTAFVPPLHISDIRLIYPERKFKIASKTKCRILNVDNHGHIIATM 558

Query: 441 KKTLVKSK---LAILSSYAEA----TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
           KK+LV  +     ++ S+  A         T G +     HGC + F+ GV GF P+SE+
Sbjct: 559 KKSLVNDEELEKPVIESFETAKSIKNKNEKTVGTVQSFNGHGCVIMFFGGVTGFLPKSEV 618

Query: 494 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLG-SLV 548
                        +GQ V+ +++      RRI ++  +      +     + +K+G S++
Sbjct: 619 SEVFVKRAEDHLRLGQTVQVKVLEVDEERRRIIVTCKVSNEEAQQQKSIIESLKIGQSII 678

Query: 549 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDN 607
             VV   T ++V+V +   G  +G I   H++D  +E        I+ G +   L++  +
Sbjct: 679 ETVVVEKTKDSVIVEIPDVGI-RGVIYVGHISDERIEQCRAEIKKIRIGSKLTGLVIDKD 737

Query: 608 ESSNLL-LSAKYSLINSAQ--QLPSDASHI---HPNSVVHGYVCNIIETGCFVRFLGRLT 661
             + +  LS K SL+  AQ  +LP+  + I        +HGYV +I  TG FV F G+  
Sbjct: 738 SRTQIFNLSLKKSLMKDAQNKRLPTTFAEITKFKKTDPLHGYVKSISSTGVFVAFTGKFV 797

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           G    S AV+ ++ D+ K +Y  QSV + +L  + +  R  L+LK
Sbjct: 798 GLVLPSYAVESRQVDIEKAFYSNQSVTAYLLRTDDDNERFLLTLK 842



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 17/255 (6%)

Query: 464  THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKCRIMSSIP 520
            T G I K+      +   N + G +   E  L+   EP      G   + VK +I S I 
Sbjct: 1068 TIGKIVKVTPKYLLIELENKITGISTALE-ALNDFTEPLDQVFAGKENEFVKAKITSVIA 1126

Query: 521  ASRRINLSFMMKPTRV----SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIP 575
              +++ L      + V    S  DL K+G +V+G+V  VT   + V++   G S +  +P
Sbjct: 1127 DEKKVQLQLAEDESTVQKITSHSDL-KVGEVVNGLVKTVTDKGLFVFL---GKSVEAFVP 1182

Query: 576  TEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 635
               L+D   +    K   KP       +V  NE   +LL+ + + +N   ++  + S I 
Sbjct: 1183 VSKLSD--SYLKEWKKFYKPMQPVVGKIVSCNEDDRILLTLRETEVNGDLKVLKNYSDIK 1240

Query: 636  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
            P  + +G V N+ + G FV+      +TG A  ++  D    D+   + VG  V++ +L 
Sbjct: 1241 PGDIFNGTVRNVTDFGVFVKLDNTANVTGLAHITEIADEVPEDIQSIFGVGDRVKAYVLK 1300

Query: 694  VNSETGRITLSLKQS 708
             N E  +++LSLK S
Sbjct: 1301 SNPEKKQLSLSLKAS 1315



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 3/168 (1%)

Query: 365  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
            + +HSD+K G VV G V  V   G  V     V+A  P+  +S+  + +  K +K    +
Sbjct: 1145 ITSHSDLKVGEVVNGLVKTVTDKGLFVFLGKSVEAFVPVSKLSDSYLKEWKKFYKPMQPV 1204

Query: 425  VFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 482
            V +++   +  RI +T ++T V   L +L +Y++     I +G +  +   G FV+  N 
Sbjct: 1205 VGKIVSCNEDDRILLTLRETEVNGDLKVLKNYSDIKPGDIFNGTVRNVTDFGVFVKLDNT 1264

Query: 483  -GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
              V G A  +E+  +   +  S++ VG  VK  ++ S P  ++++LS 
Sbjct: 1265 ANVTGLAHITEIADEVPEDIQSIFGVGDRVKAYVLKSNPEKKQLSLSL 1312



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 121/577 (20%), Positives = 230/577 (39%), Gaps = 81/577 (14%)

Query: 111  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRT 165
            L  YVKSI   G  + F    F G +  +   E+  +D++        +   ++R+ D  
Sbjct: 776  LHGYVKSISSTGVFVAF-TGKFVGLVLPSYAVESRQVDIEKAFYSNQSVTAYLLRTDDDN 834

Query: 166  RKVVYLSSDP------DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 219
             + +     P      +T+S     D    S+  +  G ++  +++ + +N + +     
Sbjct: 835  ERFLLTLKAPKVEKAAETISAENIIDTSIKSVKDIKLGKILDAKIKGVKKNQLNIILADN 894

Query: 220  FTGTVDIFHLQNTF--------PTTNWK------------NDYNQHKKVNARILFVDPTS 259
              G VDI  + + +        P +++K            +D   HK +     FV  T 
Sbjct: 895  VHGRVDISEVFDNYNDIKDKKHPLSHYKANDKVRVKIIGHHDLKSHKSLPITHNFVKGT- 953

Query: 260  RAVGLTLNPYLLHNRAPPSHVKVGDIYD----QSKVVRVDRGLGLLLDIPSTPVSTPAYV 315
                LT+ P  L ++     VK  DI D       +  V+      L +  TP +  A +
Sbjct: 954  -VFELTMKPSQLKSK----DVKELDIRDITVGDEIIAFVNNYQNSTLWLTVTP-TIKAKL 1007

Query: 316  TISDVAEE---EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 372
            +I D++EE    ++ +E  +  GS ++V + G    +     IL+ +   G + +  D+K
Sbjct: 1008 SIFDLSEETLMNIKNVEDDFPLGSVLKVNVTG----KDQNKSILQVTQRNGKINSIDDLK 1063

Query: 373  PGMVVKGKVIAVDSFGAIVQFPGGVKAL-CPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
             G    GK++ V     +++    +  +   L  +++F   +P  +   G E  F    V
Sbjct: 1064 VGGHTIGKIVKVTPKYLLIELENKITGISTALEALNDF--TEPLDQVFAGKENEF----V 1117

Query: 432  KSKRITVTHKKTLVKSKLA-------ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
            K+K  +V   +  V+ +LA        ++S+++     + +G +  +   G FV     V
Sbjct: 1118 KAKITSVIADEKKVQLQLAEDESTVQKITSHSDLKVGEVVNGLVKTVTDKGLFVFLGKSV 1177

Query: 485  QGFAPRSELGLDPGCEPSSMYH-----VGQVVKC----RIMSSIPASRRINLSFMMKPTR 535
            + F P S+L      E    Y      VG++V C    RI+ ++   R   ++  +K  +
Sbjct: 1178 EAFVPVSKLSDSYLKEWKKFYKPMQPVVGKIVSCNEDDRILLTL---RETEVNGDLKVLK 1234

Query: 536  VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
               D  +K G + +G V  VT   V V +       G      +AD +     ++S+   
Sbjct: 1235 NYSD--IKPGDIFNGTVRNVTDFGVFVKLDNTANVTGLAHITEIADEVPED--IQSIFGV 1290

Query: 596  GYEFDQLLVLDN-ESSNLLLSAKYSLINSAQQLPSDA 631
            G      ++  N E   L LS K S  N+ + +   A
Sbjct: 1291 GDRVKAYVLKSNPEKKQLSLSLKASHFNTNETITEKA 1327


>gi|409051813|gb|EKM61289.1| hypothetical protein PHACADRAFT_168722 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1480

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 347/1233 (28%), Positives = 597/1233 (48%), Gaps = 153/1233 (12%)

Query: 629  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 688
            S+ + + P S+V   + ++  TG  ++ LG   G   +     G   D+ + + VGQ V+
Sbjct: 339  SNTTSVVPGSLVSALITSVQPTGLNLQVLGFYNGTIDQFHLPPG---DVEENFKVGQKVK 395

Query: 689  SNIL-DVNSET-GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 746
            + IL D+   T  R  LSL     S TD S       ++      Q+S H        E 
Sbjct: 396  ARILYDIAPSTPSRFALSLADHVVSMTDKS-------VDVSEDAKQTSLH--------EA 440

Query: 747  FIIGSVIEGK--VHESNDFGVVVSFEEHSDVYGFITHHQLAGATV----------ESGSV 794
            F IG  ++    +    + G++V  E    V GF+   Q++   V          + G++
Sbjct: 441  FTIGVPVDPMKVIRVEPERGLIV--EVTPTVEGFVHISQVSDEHVPMLSASSGPWKVGTM 498

Query: 795  IQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 853
             +A +      + L+ LS+K +V   +F +                  ++ V + +   V
Sbjct: 499  HRARVTGYHPFDGLLQLSMKPSVLEQKFLQVG----------------EVKVGEVIKGTV 542

Query: 854  EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLL 913
            + + ++ L +S+      + + +       K PQK+F  G S+   ++ +       R  
Sbjct: 543  KKLTDSALFVSISGNVDGVIWPNHYADIHLKHPQKRFKPGGSIKCRILVVDPE----RKR 598

Query: 914  LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 973
            ++L A      SS            G +  A + ++    L+++F       + I E ++
Sbjct: 599  VVLTAKKTLIDSSLPIVASLDDVKEGLVTHAVVFKVSEKSLQVEFYNNLKAIVPIREASE 658

Query: 974  DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS--IKPSMLTVSEIGSKLLF 1031
                 + +L + F +G+ V  RII+ + +     S + + S   K ++  +         
Sbjct: 659  ---TTISSLSAAFPLGKVVQVRIISCNAETGRIVSSIRQASANFKAAITAIQ-------- 707

Query: 1032 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR--FHIGK 1089
               DV IG  V G V ++  E A++T+       L  L++      +   Q R    +G 
Sbjct: 708  ---DVEIGHSVEGVVSEIQKEKAIVTLKPTQVRALLSLNNLANRRGIAVAQLRSSLKVGD 764

Query: 1090 AVTGHVL-SINKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1147
             +   V+ S N EK  + +  +P + + +  K+  I        +  G IVGGR+ + + 
Sbjct: 765  KLMDLVVTSRNPEKGFVLVATKPKEKEEVLQKSALILES-----VQIGQIVGGRVIRHIR 819

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ-FDPLSGYDEGQFVKCKVLEIS 1206
               G +V++   + G +H T+     VSD    Y+ G  F P+         K  V+ I 
Sbjct: 820  A--GALVKLTSRISGILHPTD-----VSD---DYESGTPFPPVD-----TVFKAAVIGID 864

Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1266
               R    + LS R S+         + S  V      +  + D+     V+G++K+V  
Sbjct: 865  TDKRT---LTLSTRRSV--------MNPSVHVPVADPVINDVSDMKAGSTVRGFIKSVAE 913

Query: 1267 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
             G F+ L R +DA+V +  L D +V+  +  F   +LV GR+LSV    K+VE++ ++SD
Sbjct: 914  HGLFVTLGRNIDARVQIKELFDDFVKDWKSRFQANQLVKGRILSVNVEKKQVEMSFRSSD 973

Query: 1327 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
            S  ++Q  I  LS+L  G  V   +K++  YGLF+ +E + + GLCH SELS++   ++ 
Sbjct: 974  SSRSAQLTIK-LSDLSEGQKVDAVVKKIADYGLFLEVEGSKVRGLCHKSELSDNPAADVT 1032

Query: 1387 TI---YRAGEKVKVKILKVDKEKRRISLGMKSSYF------------KNDADNLQMSSEE 1431
                 +R  +KVK  +L VD EKRRIS G+K SYF              + ++L +  EE
Sbjct: 1033 MALRSFRESDKVKAVVLTVDSEKRRISFGLKPSYFVEEDFQEAESESGAEQESLGVIDEE 1092

Query: 1432 ESDEAIEEVGSYNRSSLLENSSVAVQD-------MDMESEDGGSLVLAQIESRASVPPLE 1484
               E +E +G+          +V  ++       MD++ +  GSLV A+  S+ +  P  
Sbjct: 1093 SDREHVEGIGNEGSDEEKNKETVNAEEVVDEDETMDVDVDVSGSLV-ARKGSQTNAGPSA 1151

Query: 1485 V----NLDDE------QPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAA 1534
            +     LDD       Q D+D  +      + E ++ DE      +K++ +E EQ++ A 
Sbjct: 1152 IRSVLKLDDGFQWSTVQQDVDVEM-----ESSEKESGDEDQPSKKRKRKHKEIEQDLTAD 1206

Query: 1535 EERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1594
                L+   P +  +FER++  SPNSS++WI+YM+F + +++++KAR IA+R+L+TIN R
Sbjct: 1207 ----LQTKTPESNADFERILLGSPNSSYLWIQYMSFQIQLSEIDKAREIAQRSLKTINFR 1262

Query: 1595 EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLA 1654
            EE EKLN+WVA  NLEN YG   EE++   F+ A ++ D K VHL +  ++E++E+ + A
Sbjct: 1263 EEREKLNVWVALLNLENVYGT--EESLEVTFKDAARHNDSKTVHLRMAAIFEQSEKIEKA 1320

Query: 1655 DELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAIL 1713
            +E   +  KKF HS KVW    +  L++ + E  +A++ R+L SL + KH+K IS+ A L
Sbjct: 1321 EEQHRRTAKKFGHSSKVWTLFAEHYLRRGKLEDARALLPRSLQSLEKQKHLKTISKFAQL 1380

Query: 1714 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1773
            E+K G  +RG+++FEG++  +PKR D+WSIY+D E   GD+  +R LF+R ++  +   K
Sbjct: 1381 EYKLGDPERGKTIFEGVMESHPKRWDIWSIYIDMEAGQGDIMNLRNLFDRVLAQKMTSHK 1440

Query: 1774 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
             K  FKK+LE E+ +G+EE    VK KA+E+ +
Sbjct: 1441 AKSFFKKWLELERRIGDEEGAGIVKAKAIEWTQ 1473



 Score =  183 bits (465), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 197/790 (24%), Positives = 344/790 (43%), Gaps = 108/790 (13%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG-------LARAADALDPILDNEIEANEDN 56
           + I  GMK++G V  V    L++ LP  L          ++    L+ + D E E   D 
Sbjct: 121 KRIIVGMKIFGQVMSVEPLALIVSLPNQLLAHIPITNITSQLTSLLESMDDEEPEDVSDE 180

Query: 57  L-------------LPTIFHVGQLVSCIVLQLDD-------------DKKEIGKRKIWLS 90
                         L  IF  GQ V  +V  +               D+ +   R++ LS
Sbjct: 181 SDEEGPSMRRQVPELSEIFRPGQYVRAVVTAVHTAGSTDTVGFSRTRDESQKASRRVELS 240

Query: 91  LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-----RNNLAENS 145
           L    + +G++   V+ G   +A VKS+EDHGYIL  G+    GFL      R+ + E  
Sbjct: 241 LFPDKVNEGVAKADVKAGFACSAAVKSVEDHGYILDMGISDILGFLTFKDAQRSRVGE-- 298

Query: 146 GIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQ 205
            + +  G LL   V  +    +   +S  P+ V      ++   +   +VPG +VS  + 
Sbjct: 299 -MRLSIGHLLDVCVTKLSSNGRTCNVSISPEFVRSTSLTEVSNTT--SVVPGSLVSALIT 355

Query: 206 SILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDPTSRA-VG 263
           S+   G+ L  L ++ GT+D FHL    P  + + ++   +KV ARIL+ + P++ +   
Sbjct: 356 SVQPTGLNLQVLGFYNGTIDQFHL----PPGDVEENFKVGQKVKARILYDIAPSTPSRFA 411

Query: 264 LTLNPYLLHNRAPPSHVK-------------VGDIYDQSKVVRVDRGLGLLLDIPSTPVS 310
           L+L  +++        V              +G   D  KV+RV+   GL++++  TP +
Sbjct: 412 LSLADHVVSMTDKSVDVSEDAKQTSLHEAFTIGVPVDPMKVIRVEPERGLIVEV--TP-T 468

Query: 311 TPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 367
              +V IS V++E V  L      +K G+  R R+ G+   +GL    +K S  E     
Sbjct: 469 VEGFVHISQVSDEHVPMLSASSGPWKVGTMHRARVTGYHPFDGLLQLSMKPSVLEQKFLQ 528

Query: 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
             +VK G V+KG V  +      V   G V  +    H ++  +  P K+FK G  +  R
Sbjct: 529 VGEVKVGEVIKGTVKKLTDSALFVSISGNVDGVIWPNHYADIHLKHPQKRFKPGGSIKCR 588

Query: 428 VLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
           +L V  + KR+ +T KKTL+ S L I++S  +  + L+TH  + K+ +    V FYN ++
Sbjct: 589 ILVVDPERKRVVLTAKKTLIDSSLPIVASLDDVKEGLVTHAVVFKVSEKSLQVEFYNNLK 648

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS-------IPASRRINLSFMMKPTRVSE 538
              P  E         S+ + +G+VV+ RI+S        + + R+ + +F    T + +
Sbjct: 649 AIVPIREASETTISSLSAAFPLGKVVQVRIISCNAETGRIVSSIRQASANFKAAITAIQD 708

Query: 539 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGY 597
              V++G  V GVV  +     +V  +     +  +   +LA+    A   ++S +K G 
Sbjct: 709 ---VEIGHSVEGVVSEIQKEKAIV-TLKPTQVRALLSLNNLANRRGIAVAQLRSSLKVGD 764

Query: 598 EFDQLLVL--DNESSNLLLSAKYS-----LINSAQQLPSDASHIHPNSVVHGYVCNIIET 650
           +   L+V   + E   +L++ K       L  SA  L S    +    +V G V   I  
Sbjct: 765 KLMDLVVTSRNPEKGFVLVATKPKEKEEVLQKSALILES----VQIGQIVGGRVIRHIRA 820

Query: 651 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS-------VRSNILDVNSETGRITL 703
           G  V+   R++G             D+S  Y  G          ++ ++ ++++   +TL
Sbjct: 821 GALVKLTSRISGIL--------HPTDVSDDYESGTPFPPVDTVFKAAVIGIDTDKRTLTL 872

Query: 704 SLKQSCCSST 713
           S ++S  + +
Sbjct: 873 STRRSVMNPS 882


>gi|156378172|ref|XP_001631018.1| predicted protein [Nematostella vectensis]
 gi|156218050|gb|EDO38955.1| predicted protein [Nematostella vectensis]
          Length = 1771

 Score =  375 bits (963), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 416/1578 (26%), Positives = 705/1578 (44%), Gaps = 240/1578 (15%)

Query: 369  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG--KKFKVGAELVF 426
            S + PGM+V  +V    S G IV F    +    + H+ E         K +K  ++ V 
Sbjct: 296  SSLLPGMLVNTRVSQCTSSGVIVSFLELFEGSVHILHLPENGGSGENLEKLYKKKSKHVA 355

Query: 427  RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCFVRFYNG 483
            R+L V  K+K ++++   ++++ KL    S +     +  +  IT+ ++  G      +G
Sbjct: 356  RILYVNPKNKVVSLSMLDSIIQFKLPSFESCS--IGDIFDNVTITRGDQGLGLLANVKDG 413

Query: 484  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI--MSSIPA--SRRINLSFMMKPTRVSED 539
            + GF   S++      +    Y  G   KCR+  M++I    S     S + KP    ED
Sbjct: 414  LNGFVHFSQVSDKQIEKLGKKYKAGTSHKCRVLGMNTIDGLLSLTTKKSIINKPFMRYED 473

Query: 540  DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKP 595
              +K GS+V G +  +T     + V    + KG +   HLAD    H E       V+K 
Sbjct: 474  --IKPGSIVEGTI--ITLEKFGMLVSVSDHIKGLVTNMHLADIILKHPEKKLTEGKVVKC 529

Query: 596  GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
                 ++L +D     L L+ K ++++S  Q+ +  S   P +  HG++ ++ E GC V 
Sbjct: 530  -----RVLTVDPGQRRLHLTHKKTMVSSTLQVITQYSDAKPGTTSHGFITSVREYGCLVT 584

Query: 656  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC--SST 713
            F   + G  P+ +    +  D    +Y+GQ +  +++  N +  ++ LSLK +    SST
Sbjct: 585  FYNNVKGLVPKDQLGIQESEDPRGVFYLGQVLTCHVISCNPDQQKLKLSLKANSANKSST 644

Query: 714  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 773
              S       L+   A  ++   N S++K       G V+ G V     +GV V F    
Sbjct: 645  QVSLQTASTSLKNA-AESKTMVTNFSDIK------PGMVLPGFVKLLMGYGVFVEFA--P 695

Query: 774  DVYG-----FITHHQLAGAT--VESGSVIQAAILDVAKAERLVDLSLKTVFID---RFRE 823
             + G     FI +H ++ A    + G  + A + +V    +   +SLK   ++    +  
Sbjct: 696  GILGLAPNSFIANHFVSDAASHFKIGQTLVAQVNEVDAERQRFLVSLKQSDLNPGSDWTS 755

Query: 824  ANSNRQAQKKKRKRE------ASK--------DLGVHQTVNAIVEIVKENYLVLSLPEYN 869
            A +    ++   +R+      ASK         L V   +   V  VK+N + L+LP+  
Sbjct: 756  ATAGALLEEILSERKHILDELASKTEDVKNLLSLPVGSCIEGKVSKVKKNGISLTLPD-- 813

Query: 870  HSIGYASVSDYNTQKFPQK-QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
                   +  +   +  Q    L G+ V   V+ L    +   L LL   +   +   +K
Sbjct: 814  ------GLKGFVFHQLAQGVSCLEGEVVQGCVLDLDVKKSVVELTLLPDVVKGRQNQKNK 867

Query: 929  RAKKKSSYDVGSLVQAEITEIKPLELRL-KFGIGFH-GRIHITEVNDDKSNVVENLFSNF 986
              + K    V  +VQ    E   + L    F IG+   ++H+ ++ D        +   F
Sbjct: 868  PKQMKPGQPVDFIVQLIKAEYMVVVLPCAAFKIGYAPAKMHLNDIRD--------VAKRF 919

Query: 987  KIGQTVTARIIAKSNK----PDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQR 1041
             +GQ     I+  S+      + + S   + ++KP  +T  E+ S K L  + +V +GQ 
Sbjct: 920  NVGQKYRGSILESSSHCIVVSECQNS--SKENLKPGTVTSVEVRSIKPL--QMNVQLGQ- 974

Query: 1042 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--N 1099
            + G V+ V N              L   +S ++P         F +G+ +   +L     
Sbjct: 975  IHGRVH-VSNA----------ADDLIQGESPFKP---------FQMGQKIQAKILGFRDT 1014

Query: 1100 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS-------KILSGVGGL 1152
            K    L L  R F   +++ ++  S   M +     ++VG           KI   V   
Sbjct: 1015 KTHNFLPLTHRNFTRAVAELSLKPS---MVSKTSASEVVGAVYDEKKIEDFKIGDEVQAF 1071

Query: 1153 V---------VQIGPHLYGRVHFTELKN-ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            V         + I   + GRV      N + V   LS      F P +G+       C V
Sbjct: 1072 VKSTSDNCIWMAINTLVSGRVELLHASNDVKVLRHLS----SAFKPGNGH------TCTV 1121

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            L++ +      H  L+L      ++    S LS D   PG+                  +
Sbjct: 1122 LDVDKD-----HEVLNL-----SLTVKPDSQLSRDQIVPGR----------------VTR 1155

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV------AGRV-------- 1308
             + + G FI L       V L++++D + E+P   + + ++V      A R         
Sbjct: 1156 VMPTSGLFIQLPLHKSGLVALTDIADHFTENPTDGYKVKQIVRWLQSQADRTNPTDGYKV 1215

Query: 1309 ------------------LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ 1350
                              LS+ P S+  E T +    ++ +  EI +L+ L VGDIV G 
Sbjct: 1216 KQIVRCCILSKKDNGHYDLSLRP-SRTTEATTQEEKDKSRTDREIGSLAALDVGDIVRGY 1274

Query: 1351 IKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1410
            +    + G+F+++   N+     +  LS  +V   + ++  G+ V  K+L ++    +I 
Sbjct: 1275 VSCATNIGVFVSL-GRNIKARVQIKNLSHFYVKEWKPLFPVGKLVTGKVLSINPTNGQIE 1333

Query: 1411 LGMKSSYF--KNDADNLQMS--------------------SEEESDEAIEEVGSYNRSSL 1448
            L +K       + A N + +                    +E ESDE +E +    R+  
Sbjct: 1334 LSLKGRDVGGPDPAPNPKQTEETGKKRKKATKVKTVDAGEAEPESDEDVEAIVKRLRADE 1393

Query: 1449 LENSS------VAVQDMDMESEDGGSLVLAQIE--SRASVPP-----LEVNLDDEQPDMD 1495
             ++         + +    E EDG     +QI+   R  V        +   D  + ++D
Sbjct: 1394 SDDEQGPHESEESEECNSSEPEDGDESTASQIKKIKRIQVSAGFNWSGDTEEDLGEANVD 1453

Query: 1496 NGISQ-NQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERL 1553
            N   + N    +  + +  K  +  K+  K+  E  +   E+ LL+ D  P   ++F+RL
Sbjct: 1454 NSSDEKNDSENESIEQVSRKKTKRQKRAAKKAEEDFLYRTEQALLDTDHTPECAEDFDRL 1513

Query: 1554 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1613
            V SSPN+S  W++YMAF L   +++KAR++AERAL+TI+ REE EKLNIWVA  NLEN Y
Sbjct: 1514 VLSSPNNSVTWLQYMAFHLHTTEIDKARAVAERALRTISFREEREKLNIWVALMNLENLY 1573

Query: 1614 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1673
            G   +E+++KVF+RALQ+ +PKKV   L+ +Y ++E+ +LA++L + M K+F  S KVW+
Sbjct: 1574 GT--QESLIKVFERALQHNEPKKVFFHLITIYTQSEKTELAEKLFHTMTKRFSQSKKVWI 1631

Query: 1674 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1732
               +  +K  + +  + ++QR L SLP  KH++ I Q A++EFKNG   RG+++ E +LS
Sbjct: 1632 EFGRFFMKTGKPDSARKLLQRGLKSLPTRKHVETIVQFALMEFKNGDPQRGQTVLESVLS 1691

Query: 1733 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1792
             YPKRTD+WS+Y+D   + G  D +R +FER I ++L  +KMKFLFKKYL++E+  G+E 
Sbjct: 1692 NYPKRTDIWSVYIDMMSKQGHPDTVRQIFERVIHMNLSSRKMKFLFKKYLDFEREHGDEM 1751

Query: 1793 RIEYVKQKAMEYVESTLA 1810
             +E VK KAMEYVES +A
Sbjct: 1752 SVEAVKTKAMEYVESKVA 1769



 Score =  306 bits (783), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 183/538 (34%), Positives = 298/538 (55%), Gaps = 25/538 (4%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA----LDPILDNEIEANEDNLLP 59
           + +  GMKL G V EV E +L+I LP GL G     D     +  +  +  E   ++ +P
Sbjct: 110 KKLCEGMKLLGAVKEVGEFELIISLPNGLSGFVHILDINEKLMSALAKSSTEERIEDSIP 169

Query: 60  TI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
           ++   F V  LV C+V +L   K   G RK+ LSLR   +  G++   +  G VL   V 
Sbjct: 170 SLGDLFTVNSLVVCVVKELLSSKH--GHRKVKLSLRPEDVNAGVT--NIVPGFVLPGCVS 225

Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 176
           S+EDHGY+L FG+P  TGFL +    + +G  +  G  L  +V S D T +V+ +S D D
Sbjct: 226 SVEDHGYVLSFGIPGKTGFLSK----KKTGRVLVEGQYLNTIVESAD-TGRVIRVSVDQD 280

Query: 177 TV-SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL-QNTFP 234
            + S  ++ D+K +    L+PGM+V+TRV     +GV++SFL  F G+V I HL +N   
Sbjct: 281 KIKSAMISSDMK-VRFSSLLPGMLVNTRVSQCTSSGVIVSFLELFEGSVHILHLPENGGS 339

Query: 235 TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-SHVKVGDIYDQSKVVR 293
             N +  Y +  K  ARIL+V+P ++ V L++   ++  + P      +GDI+D   + R
Sbjct: 340 GENLEKLYKKKSKHVARILYVNPKNKVVSLSMLDSIIQFKLPSFESCSIGDIFDNVTITR 399

Query: 294 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 353
            D+GLGLL ++         +V  S V+++++ KL KKYK G+  + R+LG   ++GL +
Sbjct: 400 GDQGLGLLANVKD---GLNGFVHFSQVSDKQIEKLGKKYKAGTSHKCRVLGMNTIDGLLS 456

Query: 354 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 413
              K S        + D+KPG +V+G +I ++ FG +V     +K L    H+++  +  
Sbjct: 457 LTTKKSIINKPFMRYEDIKPGSIVEGTIITLEKFGMLVSVSDHIKGLVTNMHLADIILKH 516

Query: 414 PGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 471
           P KK   G  +  RVL V    +R+ +THKKT+V S L +++ Y++A     +HG+IT +
Sbjct: 517 PEKKLTEGKVVKCRVLTVDPGQRRLHLTHKKTMVSSTLQVITQYSDAKPGTTSHGFITSV 576

Query: 472 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
            ++GC V FYN V+G  P+ +LG+    +P  ++++GQV+ C ++S  P  +++ LS 
Sbjct: 577 REYGCLVTFYNNVKGLVPKDQLGIQESEDPRGVFYLGQVLTCHVISCNPDQQKLKLSL 634



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 149/704 (21%), Positives = 271/704 (38%), Gaps = 130/704 (18%)

Query: 196  PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 255
            PG +V   + ++ + G+++S   +  G V   HL +     + +    + K V  R+L V
Sbjct: 476  PGSIVEGTIITLEKFGMLVSVSDHIKGLVTNMHLADII-LKHPEKKLTEGKVVKCRVLTV 534

Query: 256  DPTSRAVGLTLNPYLL---------HNRAPPSHVKVGDI------------YDQSKVVRV 294
            DP  R + LT    ++         ++ A P     G I            Y+  K +  
Sbjct: 535  DPGQRRLHLTHKKTMVSSTLQVITQYSDAKPGTTSHGFITSVREYGCLVTFYNNVKGLVP 594

Query: 295  DRGLGLLLDIPSTPVSTPAYV----TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 350
               LG+        V     V     IS   +++  KL  K    +    ++     L+ 
Sbjct: 595  KDQLGIQESEDPRGVFYLGQVLTCHVISCNPDQQKLKLSLKANSANKSSTQV----SLQT 650

Query: 351  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
             +T +  A+  + +V   SD+KPGMV+ G V  +  +G  V+F  G+  L P   ++   
Sbjct: 651  ASTSLKNAAESKTMVTNFSDIKPGMVLPGFVKLLMGYGVFVEFAPGILGLAPNSFIANHF 710

Query: 411  IVKPGKKFKVGAELVFRV--LGVKSKRITVTHKKT-------------------LVKSKL 449
            +      FK+G  LV +V  +  + +R  V+ K++                   ++  + 
Sbjct: 711  VSDAASHFKIGQTLVAQVNEVDAERQRFLVSLKQSDLNPGSDWTSATAGALLEEILSERK 770

Query: 450  AILSSYAEATDRL----------ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 499
             IL   A  T+ +             G ++K++K+G  +   +G++GF    +L     C
Sbjct: 771  HILDELASKTEDVKNLLSLPVGSCIEGKVSKVKKNGISLTLPDGLKGFV-FHQLAQGVSC 829

Query: 500  EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNA 559
                +   G V+   +  S+     +      +  + ++   +K G  V  +V ++    
Sbjct: 830  LEGEVVQ-GCVLDLDVKKSVVELTLLPDVVKGRQNQKNKPKQMKPGQPVDFIVQLIKAEY 888

Query: 560  VVVYVIAKGYSKGTIPTE-HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKY 618
            +VV +    +  G  P + HL D       ++ V K      +  V      ++L S+ +
Sbjct: 889  MVVVLPCAAFKIGYAPAKMHLND-------IRDVAK------RFNVGQKYRGSILESSSH 935

Query: 619  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG--QRAD 676
             ++ S  Q  S   ++ P +V    V +I      V+ LG++ G    S A D   Q   
Sbjct: 936  CIVVSECQ-NSSKENLKPGTVTSVEVRSIKPLQMNVQ-LGQIHGRVHVSNAADDLIQGES 993

Query: 677  LSKTYYVGQSVRSNILDV--------------NSETGRITLSLKQSCCSSTDASFMQEHF 722
              K + +GQ +++ IL                N       LSLK S  S T AS +    
Sbjct: 994  PFKPFQMGQKIQAKILGFRDTKTHNFLPLTHRNFTRAVAELSLKPSMVSKTSASEVVGAV 1053

Query: 723  LLEEKI----------AMLQSSKHNGSELKWVEGFIIGSVIEGKV---HESNDFGVVVSF 769
              E+KI          A ++S+  N     W+    I +++ G+V   H SND  V+   
Sbjct: 1054 YDEKKIEDFKIGDEVQAFVKSTSDN---CIWMA---INTLVSGRVELLHASNDVKVL--- 1104

Query: 770  EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 813
                          L+ A  + G+     +LDV K   +++LSL
Sbjct: 1105 ------------RHLSSA-FKPGNGHTCTVLDVDKDHEVLNLSL 1135


>gi|398407171|ref|XP_003855051.1| hypothetical protein MYCGRDRAFT_99211 [Zymoseptoria tritici IPO323]
 gi|339474935|gb|EGP90027.1| hypothetical protein MYCGRDRAFT_99211 [Zymoseptoria tritici IPO323]
          Length = 1790

 Score =  375 bits (963), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 276/897 (30%), Positives = 458/897 (51%), Gaps = 101/897 (11%)

Query: 953  ELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIAKSNKPDMK---- 1006
            ++ ++      GRI ++E  D   ++         FK    V  +I+   +  + +    
Sbjct: 940  QVNVRLADNVQGRIDVSEAFDSWKDITNKAAPLEKFKPNDVVEVKILGIHDARNHRFLPI 999

Query: 1007 -----KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1061
                 K  ++ELS K S +   + G + L     V  G     +V   D+    + +S +
Sbjct: 1000 SHRAGKVPVFELSAKRSRI---DAGDESLLSFDTVKKGSSCLAFVNNHDDSCVWVNLSPN 1056

Query: 1062 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1121
            ++ ++ ++D + +  +LQ  + RF IG A+   V +I+     L L  R   +  +   +
Sbjct: 1057 VRGRVALMDLSDDVGQLQNVENRFRIGCALKVTVKAIDLSSNRLDLTAR---EATTSGPL 1113

Query: 1122 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
             + +      +  G ++  R++K+      + V+I  +L G V   EL     SD     
Sbjct: 1114 TLQD------LKPGMVLPARVTKV--NERSVFVEIADNLAGPVPLVEL-----SDDYEQV 1160

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
            +  Q      Y++   V+  VL +    +  F   LS+R S           LS+ +   
Sbjct: 1161 NTAQ------YNKNDIVRVCVLGVDLPNKRAF---LSMRPS---------KVLSSSLPVK 1202

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
              H+  +  L    IV+G+VK V  KG F+ L  + DA V +S+LSD Y++  +  F I 
Sbjct: 1203 DPHVNDVSQLKVGDIVRGFVKQVADKGVFVTLGARTDALVRISDLSDQYIKDWQSVFEID 1262

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            +LV GRVL+V+  SK+V ++LK S         +N ++++ VG  V+G++++VE +G FI
Sbjct: 1263 QLVKGRVLAVDVSSKQVRLSLKNSHVDKNYTPPLN-INDIEVGMTVVGKVRKVEDFGAFI 1321

Query: 1362 TIENTN--LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
             I+NT   L GLCH SE++   ++++ T+Y AG+ VK ++L VD EKR+ISLG+K+SYF 
Sbjct: 1322 DIDNTQPRLSGLCHRSEVAAKRIEDVRTLYSAGDVVKARVLDVDVEKRKISLGLKASYFN 1381

Query: 1420 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1479
            N AD+    SEE+SD               E   V V+D D ES+  G + L+ ++   S
Sbjct: 1382 NTADD--EGSEEDSD--------------AEMGGVDVEDADEESDSDGGIDLSNVQDIES 1425

Query: 1480 VPPLEVNLDDEQPDMDNGISQNQG-------------HTDEAKTIDEKNNRHAKKKEKEE 1526
                  + D+ + D D  +    G              TD+    + ++   A KK K +
Sbjct: 1426 EEEFS-DADEMEVDDDPAVKLTAGLKTSGFDWTGDALDTDKGAASESEHEGPAPKKRKSK 1484

Query: 1527 REQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1586
            +  EI+      L+K  PR+  +FER +   PN+S +WI+YMAF L +++++KAR IAER
Sbjct: 1485 K-AEIKVDLTGDLDKYGPRSVSDFERQLLGQPNNSDLWIQYMAFQLQLSEIQKARDIAER 1543

Query: 1587 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1646
            AL+TI+IRE  EK N+W+A+ NLE EYG+  E+ V +VF++A Q  DP ++H  +  +Y 
Sbjct: 1544 ALRTIHIRETEEKANVWIAWLNLEVEYGD--EDRVEEVFKQACQVQDPLEMHEKMASIYI 1601

Query: 1647 RTEQNKLADELLYKMI--KKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHK 1702
             + ++  AD    +M+  K F+ S  VWL     LL   Q     +A++ +AL S+P  +
Sbjct: 1602 DSGKHVKADATFERMVGNKAFRASPDVWLNYATFLLDTLQAPARARALLSKALQSVPTRE 1661

Query: 1703 HIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLD-----------QEI 1749
            H    ++ A LEF++  G A+RGR++FEG++SEYPK +  W ++LD            E 
Sbjct: 1662 HRLLTAKFAALEFRSQYGDAERGRTIFEGLVSEYPKWSSGWDMWLDIERARVAHAENAEA 1721

Query: 1750 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            +   +   R LFER     +  ++ KF FKK+LE+E+    E+ +E VK+ A E+VE
Sbjct: 1722 KKDAIVKTRALFERISKTKMKKRRAKFTFKKWLEFEEKEAGEKEVEKVKKMAKEFVE 1778



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 180/718 (25%), Positives = 310/718 (43%), Gaps = 70/718 (9%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLAR---AADALDPIL----------DNEI 50
           +++  G  + G V  +  +D+ + LP  L G A+    +++L+  +          D+  
Sbjct: 151 KSLVVGSTVLGRVTGITGRDIALALPNNLTGYAQITAVSESLNARIERLLQDDGKPDDSG 210

Query: 51  EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRK--IWLSLRLSLLYKGLSLETVQEG 108
           +  ED  L  +FHVGQ +  +V     +  + GK+K  I L+L    +  GL+ +     
Sbjct: 211 DDAEDIDLKQLFHVGQWLRAVVTSTGSESADGGKKKRHIELTLDPGQVNGGLAEDRFVVN 270

Query: 109 MVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRT 165
             +   V+S+EDHG ++  GL   S  GF+ +  L     I  +  G ++  +V      
Sbjct: 271 STIQGSVRSVEDHGIVMDLGLSDASVKGFISKKELGSAYNITQISEGQVMLCLVTGKGSN 330

Query: 166 RKVVYLSSDPDTVSKCVTKDLKGI-----SIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
            KV+ L  D +  +  +  +   I     ++D   PG  V   V      GV+   +   
Sbjct: 331 GKVLKLCPDTNKFAVNLPSNKLPIVSEAPTVDAFQPGTAVDILVTDCDGRGVVGKIMGML 390

Query: 221 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV----DPTSRAVGLTLNPYLLHNRAP 276
             T D+FH    +   +    +    K  ARI++     D + RA  L            
Sbjct: 391 NVTADVFH-SGAYAVEDMAEKHKIGSKAKARIIYSLPQDDGSRRAADLD----------- 438

Query: 277 PSHVKVGDIYDQSKVVRV--DRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKK 331
              + +    + +KVVR+  +RGL L L +P     P +  A+  IS V++  +  +   
Sbjct: 439 -QKLTLSATVESAKVVRISAERGLFLTLPMPGNHEQPAA--AFAHISQVSDSRIDSISTT 495

Query: 332 --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV----- 384
             YK  S  + RI+ +  ++ +    LK S  +       D+  G +VKG V  +     
Sbjct: 496 GPYKVDSTHKARIIAYNPVDNVYYVSLKKSTLDQAFLRLEDLTVGSIVKGTVDKLILGGK 555

Query: 385 -DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHK 441
               G +V+    +  L P  H+S+ ++  P +K++ G  +  RVL V +  + I +T K
Sbjct: 556 KGVTGVLVKLSDSISGLVPEMHLSDTQLSHPERKYREGFPIKARVLSVDTDKRHIRLTVK 615

Query: 442 KTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 499
           K+LV++  +  I   Y +    + + G I  +   G  V+FY  V+ + P +E+      
Sbjct: 616 KSLVEADDSSLIWKDYDDLKPGMESQGTIINLLPAGAAVQFYGPVRAWLPVAEMSETFIE 675

Query: 500 EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVV 555
           +  + + +GQ V+ +I+S  PA+R + ++        +E       V  G LVSGVV V 
Sbjct: 676 KTENHFRLGQTVRVKILSVNPAAREMKVTCKSGGELTAEQQTAWEEVSGGDLVSGVVSVK 735

Query: 556 TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLD--NESSNL 612
             + V V  ++ G  KG +  EHL D     A      I+ G     LLVL+  + S  +
Sbjct: 736 GADNVSVD-LSNGL-KGVVKVEHLVDASAAKAESALKRIRVGQTLSNLLVLEKLDRSQTV 793

Query: 613 LLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
            LS K +L+  A+   L            VHG V NI  TG +V F   + G  P+S+
Sbjct: 794 ALSNKPALVEDAKNGTLIKSFEDAQEGRKVHGSVRNITPTGVYVEFASGIVGLLPKSQ 851



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 139/319 (43%), Gaps = 36/319 (11%)

Query: 417  KFKVGAEL--VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 474
            +F++G  L    + + + S R+ +T ++      L +     +    ++    +TK+ + 
Sbjct: 1079 RFRIGCALKVTVKAIDLSSNRLDLTAREATTSGPLTL----QDLKPGMVLPARVTKVNER 1134

Query: 475  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
              FV   + + G  P  EL  D     ++ Y+   +V+  ++     ++R  LS  M+P+
Sbjct: 1135 SVFVEIADNLAGPVPLVELSDDYEQVNTAQYNKNDIVRVCVLGVDLPNKRAFLS--MRPS 1192

Query: 535  RVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 582
            +V    L            +K+G +V G V  V    V V + A+  +   +    L+D 
Sbjct: 1193 KVLSSSLPVKDPHVNDVSQLKVGDIVRGFVKQVADKGVFVTLGAR--TDALVRISDLSD- 1249

Query: 583  LEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN 637
             ++    +SV    +E DQL     L +D  S  + LS K S ++     P + + I   
Sbjct: 1250 -QYIKDWQSV----FEIDQLVKGRVLAVDVSSKQVRLSLKNSHVDKNYTPPLNINDIEVG 1304

Query: 638  SVVHGYVCNIIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
              V G V  + + G F+       RL+G   RS+    +  D+   Y  G  V++ +LDV
Sbjct: 1305 MTVVGKVRKVEDFGAFIDIDNTQPRLSGLCHRSEVAAKRIEDVRTLYSAGDVVKARVLDV 1364

Query: 695  NSETGRITLSLKQSCCSST 713
            + E  +I+L LK S  ++T
Sbjct: 1365 DVEKRKISLGLKASYFNNT 1383



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 35/248 (14%)

Query: 1135 GDIVGGRISKIL----SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
            G IV G + K++     GV G++V++   + G V    L +  +S P   Y EG      
Sbjct: 540  GSIVKGTVDKLILGGKKGVTGVLVKLSDSISGLVPEMHLSDTQLSHPERKYREG------ 593

Query: 1191 GYDEGQF-VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  F +K +VL +    R   H+ L+++ SL  + + +SS +  D D          
Sbjct: 594  ------FPIKARVLSVDTDKR---HIRLTVKKSL--VEADDSSLIWKDYD---------- 632

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            DL P M  QG + N+   G  +     + A + ++ +S+ ++E  E  F +G+ V  ++L
Sbjct: 633  DLKPGMESQGTIINLLPAGAAVQFYGPVRAWLPVAEMSETFIEKTENHFRLGQTVRVKIL 692

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            SV P ++ ++VT K+    TA Q        +  GD+V G +    +  + + + N  L 
Sbjct: 693  SVNPAAREMKVTCKSGGELTAEQQ--TAWEEVSGGDLVSGVVSVKGADNVSVDLSN-GLK 749

Query: 1370 GLCHVSEL 1377
            G+  V  L
Sbjct: 750  GVVKVEHL 757



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 32/199 (16%)

Query: 629  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 688
            +D S +    +V G+V  + + G FV    R       S   D    D    + + Q V+
Sbjct: 1207 NDVSQLKVGDIVRGFVKQVADKGVFVTLGARTDALVRISDLSDQYIKDWQSVFEIDQLVK 1266

Query: 689  SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 748
              +L V+  + ++ LSLK         S + +++     I  ++                
Sbjct: 1267 GRVLAVDVSSKQVRLSLKN--------SHVDKNYTPPLNINDIE---------------- 1302

Query: 749  IGSVIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVE-------SGSVIQAAIL 800
            +G  + GKV +  DFG  +  +     + G     ++A   +E       +G V++A +L
Sbjct: 1303 VGMTVVGKVRKVEDFGAFIDIDNTQPRLSGLCHRSEVAAKRIEDVRTLYSAGDVVKARVL 1362

Query: 801  DVAKAERLVDLSLKTVFID 819
            DV   +R + L LK  + +
Sbjct: 1363 DVDVEKRKISLGLKASYFN 1381



 Score = 45.1 bits (105), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 15/213 (7%)

Query: 505 YHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVD--VVTPNA 559
           Y V    K RI++  P      +S     +    +  +DL  +GS+V G VD  ++    
Sbjct: 498 YKVDSTHKARIIAYNPVDNVYYVSLKKSTLDQAFLRLEDLT-VGSIVKGTVDKLILGGKK 556

Query: 560 VVVYVIAK--GYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLS 615
            V  V+ K      G +P  HL+D  L H    +   + G+    ++L +D +  ++ L+
Sbjct: 557 GVTGVLVKLSDSISGLVPEMHLSDTQLSHP---ERKYREGFPIKARVLSVDTDKRHIRLT 613

Query: 616 AKYSLI--NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 673
            K SL+  + +  +  D   + P     G + N++  G  V+F G +  + P ++  +  
Sbjct: 614 VKKSLVEADDSSLIWKDYDDLKPGMESQGTIINLLPAGAAVQFYGPVRAWLPVAEMSETF 673

Query: 674 RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
                  + +GQ+VR  IL VN     + ++ K
Sbjct: 674 IEKTENHFRLGQTVRVKILSVNPAAREMKVTCK 706


>gi|410918265|ref|XP_003972606.1| PREDICTED: protein RRP5 homolog [Takifugu rubripes]
          Length = 1767

 Score =  375 bits (963), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 348/1371 (25%), Positives = 629/1371 (45%), Gaps = 161/1371 (11%)

Query: 1    MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIE-ANEDN 56
            ++ +N+  GM L G V +V + ++ + LP GL+G   +   +D+   +L  +++ A+ ++
Sbjct: 80   LHIKNVREGMLLLGCVKDVADFEVTVSLPCGLQGFLSIRNISDSYTKMLSEQLDSADMED 139

Query: 57   L--LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 114
            +  LP +   G +V C V +LD  K   G   I LS+   L+ K L+  ++  GMVL+  
Sbjct: 140  ICSLPDLLCPGMIVRCAVAKLDTSKG--GNLSIQLSINPKLVNKALTTSSLNAGMVLSGC 197

Query: 115  VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 174
            V+S+EDHGYI+  G+     FLP+     N+  D+K G  +   V ++    +VV LS  
Sbjct: 198  VESVEDHGYIVDIGIKGTNAFLPKKK-GPNNQEDLKVGQYVTSTVEAVKNEGRVVRLSVS 256

Query: 175  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 234
                S+   +  +G ++  L+PG++V+  ++ + ++G+ +SFL+ FTG VD  H++    
Sbjct: 257  QLNSSQACIRSTQGWNLTNLLPGLLVNATIKKVTKHGLSVSFLSSFTGQVDFLHME---- 312

Query: 235  TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQS 289
                 + Y +  +V A +L+V+P++R V L+L  YLL      +  PP   +VG++    
Sbjct: 313  -PKEASSYKEGDEVRACVLYVEPSTRLVALSLRSYLLQPGIRVDLCPPGDDRVGEVVKSC 371

Query: 290  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFR 346
            K+  V    G +L++P     T A+   + + E + +  E +     E +C   RIL F 
Sbjct: 372  KMTTVHHMSGAILELPD---KTMAFAHKNHLREPKAQLNENRLLAMPEHTC---RILDFS 425

Query: 347  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 406
             ++ +    L+ S  +   F + D++ G VV+G V  + + G +V     +K L P  H+
Sbjct: 426  LMDNIYFVSLRKSVIDKPFFRYHDLQAGQVVEGTVTVLLAHGMVVHLADHIKGLVPRTHL 485

Query: 407  SEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            S+  +  P KK+  G ++  RVL V+   K++ +T KK LV+S L +  + ++A    ++
Sbjct: 486  SDILLKNPEKKYMEGMKVKCRVLSVEPEHKKLFLTRKKALVESSLPLFRTISDARPGCVS 545

Query: 465  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            HG+I  I+  GC VRFYN V+G  P SEL  +P  +P   +++GQV+K +++       +
Sbjct: 546  HGYIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISQPKDFFYIGQVLKTKVLQCDREKAK 605

Query: 525  INLSF------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
            + LSF        + T   E D  K+G  +   V    PN + V ++ +   +  +PT H
Sbjct: 606  LLLSFKGVMEGAAEQTAAPELD-CKVGEKLEAKVLKKMPNGLEVAILPEEI-RAYLPTMH 663

Query: 579  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHP 636
            L+DHL +  ++   ++ G     L+ ++    N+ L+ K ++  S ++     D S I  
Sbjct: 664  LSDHLSNCPLLWECLQEGDSISNLIYINRSHQNITLTKKPTIRWSLEEGVAAKDFSEIKV 723

Query: 637  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             + + G++ NI+  G FV F   L G AP+S   D   +D   TY +GQ+V + + +++ 
Sbjct: 724  GTQLFGWIKNIMPYGVFVEFPYGLVGLAPKSAMADRFISDTKTTYKLGQTVIAKVTNLDE 783

Query: 697  ETGRITLSLKQSCCSSTDASFMQEHFL-LEEKIAMLQSS-KHNGSELK-WVEGFIIGSVI 753
            E  R  ++LK S   S     +      L+E+ AM + S   + SEL+  +    +G  +
Sbjct: 784  EKRRFLVTLKISEVISPVGDVLTRLINGLQERKAMTEMSLARDDSELRQQLAALSVGQRL 843

Query: 754  EGKVHESNDFGVV-VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +  V+ + D G   VS E H        HH + G  +  G  + A IL +      V +S
Sbjct: 844  KLTVNTATDNGATFVSDELHGATIQASKHH-VTGMNLVPGQKVTAVILHIDLLSTCVHVS 902

Query: 813  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 872
            + +  + + R  N            E SK         A VE + +++ V+ L    H  
Sbjct: 903  ILSRLLGKKRSLN------------EGSK-------YTATVEHINQDFAVIFLDNTAHLT 943

Query: 873  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK 932
               + S  N     + +   G S+   ++        G  L+  +  +    +    ++K
Sbjct: 944  VIQTSSHLNHTDIQELKL--GMSLTVELIEASCEKAHGLPLVAWERSAPKRQNVPSASQK 1001

Query: 933  KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQ 990
               +  G +VQA++  +KP  +++    G  G +H++EV D K ++ +        K+G 
Sbjct: 1002 GCCF--GEVVQAKVKSVKPTLIQVTLEDGSTGTVHVSEVMDPK-DLCQGFLPTLSVKVGS 1058

Query: 991  TVTARII----AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
            TVTAR+I    A S+    K   L  +SIK  + +                +G+ +T +V
Sbjct: 1059 TVTARVIGGREASSHSKLDKSVALKSVSIKEHLNS--------------YKVGEEITCFV 1104

Query: 1047 YKVDNEWALLTISRH--LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1104
             K   +  +L ++ H  +   + +L     P      +  F +G+AV   V  + +  K 
Sbjct: 1105 SKFHPDRKVLEVTTHPGVTGTVELLAMVTNPRNATHPESVFKVGQAVYAKV--VERSTKP 1162

Query: 1105 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQIGPH--L 1160
             R +L                           + G  ++K+  G    G+VV I P   L
Sbjct: 1163 QRFIL--------------------------SLTG--VTKLEKGAVTLGMVVNIDPQKGL 1194

Query: 1161 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1220
              ++ F  +  + ++D    Y   + +PL GY + Q                      LR
Sbjct: 1195 LVKLPFGGMGTVAITDLADAY---RPNPLGGYSKNQI---------------------LR 1230

Query: 1221 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1280
              L G    N+++  T  D     +  +++L    I++GY+K+V   G FI LSR +  +
Sbjct: 1231 FFLLG----NNNEAKTVKDP---EILSVDELKEGQIIRGYIKSVEKCGIFIRLSRSIVGR 1283

Query: 1281 VLLSNLSDGYVESPEK----EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
              L + S  YV +  K      P   L+  ++LS++   + V ++L   D+
Sbjct: 1284 TELHH-STKYVCNNHKILSEHLPPSTLITTKILSIDTEEESVSLSLLPKDT 1333



 Score =  288 bits (736), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 204/615 (33%), Positives = 321/615 (52%), Gaps = 75/615 (12%)

Query: 1245 LEKIEDLSPNMIVQGYVKNV-TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
            L  +  L    +  G V N+   KG  + L       V +++L+D Y     +  P+G  
Sbjct: 1169 LTGVTKLEKGAVTLGMVVNIDPQKGLLVKLPFGGMGTVAITDLADAY-----RPNPLGGY 1223

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
               ++L       R  +    ++++T    EI ++  L  G I+ G IK VE  G+FI +
Sbjct: 1224 SKNQIL-------RFFLLGNNNEAKTVKDPEILSVDELKEGQIIRGYIKSVEKCGIFIRL 1276

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYR----AGEKVKVKILKVDKEKRRISLGM------ 1413
              + +VG   +   S  +V N   I          +  KIL +D E+  +SL +      
Sbjct: 1277 SRS-IVGRTELHH-STKYVCNNHKILSEHLPPSTLITTKILSIDTEEESVSLSLLPKDTG 1334

Query: 1414 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM----ESEDGGSL 1469
            KS     ++  L +   EE     E     N+  L E+  V+ +        +  D G  
Sbjct: 1335 KSDVLP-ESLGLPLHLFEEEKTKCEVQKRNNKRKLSESEQVSKKKKKKKSKADGNDSGVE 1393

Query: 1470 V--------------------LAQIESRASVPPLEV--------NLDDEQPDMDNGISQN 1501
            V                    + + +S A +  L+V         L+  +P     +S  
Sbjct: 1394 VYFREEDDDDDDDAKKPQSGSIKETQSSAGLSRLQVAAGFSWDVGLNSLKP-----LSAV 1448

Query: 1502 QGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA--------PRTPDEFERL 1553
            Q      +   +K+N+ A+KK + E EQ  +AAE+ L++++A        P     FERL
Sbjct: 1449 QESESSDEEEPDKSNK-AQKKSRHELEQGKKAAEKALMQREAELMDPSLQPEDAAAFERL 1507

Query: 1554 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1613
            + +SPNSS +W++YMA  L    +E+AR++AERAL+TI+ REE EKLN+WVA  NLEN Y
Sbjct: 1508 LLASPNSSLLWLQYMAHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMY 1567

Query: 1614 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1673
            G   EE++ KVF+RALQ+C+P  V+  L  +Y ++E+ K A+ L   M+K+F+    VWL
Sbjct: 1568 GT--EESLKKVFERALQFCEPMPVYQQLADIYTKSEKMKEAESLYKTMVKRFRQHKAVWL 1625

Query: 1674 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1732
                 LL++ Q +   +++QRAL S+P  + +  I++ A LEF+ G A+RGR+MF+ +L+
Sbjct: 1626 SYGTFLLQRGQSDAANSLLQRALKSMPSKESVDVIAKFAQLEFRYGDAERGRTMFDKVLT 1685

Query: 1733 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1792
             YPKRTDLWS+++D  I+ G    +R LF+R I LS+  KK+KF FK+YLEYEK  G  +
Sbjct: 1686 SYPKRTDLWSVFIDLMIKHGSQKDVRELFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQ 1745

Query: 1793 RIEYVKQKAMEYVES 1807
             ++ VK+KA+E+VES
Sbjct: 1746 SVQAVKEKAVEFVES 1760



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 150/343 (43%), Gaps = 45/343 (13%)

Query: 1074 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF--QDGISDKTVDISNDNMQTF 1131
            EP E   ++     G  V   VL +    +L+ L LR +  Q GI        +D +   
Sbjct: 312  EPKEASSYKE----GDEVRACVLYVEPSTRLVALSLRSYLLQPGIRVDLCPPGDDRV--- 364

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
               G++V       +  + G ++++        H   L+     +P +  +E +   +  
Sbjct: 365  ---GEVVKSCKMTTVHHMSGAILELPDKTMAFAHKNHLR-----EPKAQLNENRLLAMPE 416

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            +       C++L+ S      F   +SLR S+              +D P     +  DL
Sbjct: 417  HT------CRILDFSLMDNIYF---VSLRKSV--------------IDKP---FFRYHDL 450

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
                +V+G V  + + G  + L+  +   V  ++LSD  +++PEK++  G  V  RVLSV
Sbjct: 451  QAGQVVEGTVTVLLAHGMVVHLADHIKGLVPRTHLSDILLKNPEKKYMEGMKVKCRVLSV 510

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1371
            EP  K++ +T K +   + S      +S+   G +  G I  ++ +G  +   N ++ GL
Sbjct: 511  EPEHKKLFLTRKKALVES-SLPLFRTISDARPGCVSHGYIVCIKDFGCIVRFYN-DVKGL 568

Query: 1372 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              +SELS + +   +  +  G+ +K K+L+ D+EK ++ L  K
Sbjct: 569  VPLSELSSEPISQPKDFFYIGQVLKTKVLQCDREKAKLLLSFK 611



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 120/288 (41%), Gaps = 36/288 (12%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            +  G +V G ++ +L+   G+VV +  H+ G V  T L +I + +P   Y EG       
Sbjct: 450  LQAGQVVEGTVTVLLAH--GMVVHLADHIKGLVPRTHLSDILLKNPEKKYMEGMK----- 502

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
                  VKC+VL +    +  F   L+ + +L              V++       I D 
Sbjct: 503  ------VKCRVLSVEPEHKKLF---LTRKKAL--------------VESSLPLFRTISDA 539

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
             P  +  GY+  +   GC +     +   V LS LS   +  P+  F IG+++  +VL  
Sbjct: 540  RPGCVSHGYIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISQPKDFFYIGQVLKTKVLQC 599

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1371
            +    ++ ++ K      A Q+    L +  VG+ +  ++ +    GL + I    +   
Sbjct: 600  DREKAKLLLSFKGVMEGAAEQTAAPEL-DCKVGEKLEAKVLKKMPNGLEVAILPEEIRAY 658

Query: 1372 CHVSELSEDHVDNIETIYRA---GEKVKVKILKVDKEKRRISLGMKSS 1416
                 LS DH+ N   ++     G+ +   ++ +++  + I+L  K +
Sbjct: 659  LPTMHLS-DHLSNCPLLWECLQEGDSIS-NLIYINRSHQNITLTKKPT 704



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
            + S + VG  + G IK +  YG+F+      LVGL   S +++  + + +T Y+ G+ V 
Sbjct: 717  DFSEIKVGTQLFGWIKNIMPYGVFVEFP-YGLVGLAPKSAMADRFISDTKTTYKLGQTVI 775

Query: 1397 VKILKVDKEKRRISLGMKSS 1416
             K+  +D+EKRR  + +K S
Sbjct: 776  AKVTNLDEEKRRFLVTLKIS 795


>gi|171686100|ref|XP_001907991.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943011|emb|CAP68664.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1779

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 409/1547 (26%), Positives = 718/1547 (46%), Gaps = 222/1547 (14%)

Query: 348  LEGLATGILKASAFE----GLVFTHSDVKPGMVVK----GKVIAVDSF--GAIVQFPGGV 397
            L G A  IL +   E    G V  H DV   +V      G V  VD +  G+ ++     
Sbjct: 342  LPGTAADILVSEVTEHGLVGKVMGHLDVTADLVHSNAGPGAVDIVDEYKVGSRIK----A 397

Query: 398  KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE 457
            + +C  P           +K K+G  L+  VL +K K         + K+K  I S   +
Sbjct: 398  RIICNFPT---------ARKPKLGISLLPHVLSLKPK---------IAKTKNGIESLPVD 439

Query: 458  --ATDRLITHGWITKIEKH-GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQV 510
              A   +I    + ++E   G +V     GV GF   S +    +D   E S  Y VG V
Sbjct: 440  ILAHSTIIEKCTVQRVEPEIGLYVDVGVEGVPGFVHISRVKDGKVDSLFETSGPYKVGSV 499

Query: 511  VKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV-------- 562
               R++   P     NLS       V E   +++  +  GVV       +VV        
Sbjct: 500  HAARVVGYNPFDGMYNLSM---EKSVLEQPFLRIQDIPVGVVVPGVVEKLVVNEHGLGGL 556

Query: 563  -YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSN-LLLSAKYS 619
               +A+G S G +P  HL+D HL+H    +   + G +    ++  N + + L L+ K +
Sbjct: 557  IVKVAEGIS-GLVPEMHLSDVHLQHP---EKKFREGMKVKTRVLSTNPARHQLRLTLKKT 612

Query: 620  LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 679
            L+NS          +       G +  +++ G  V+F G+L GF P S+  +    D  +
Sbjct: 613  LVNSDAPPVKSYDELAVGLQTFGTIVKLLDRGAIVQFYGQLRGFLPVSEMSEAYIQDPKE 672

Query: 680  TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 739
             +  GQ++   +L  + E  R+ +S K               F LE+++A+         
Sbjct: 673  HFREGQTISVYVLSFDPEEKRMIVSCKDPSA-----------FGLEKQVAL--------- 712

Query: 740  ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------- 790
                 +   IG+++  KV +  +  + V   E S +   +    L   +V          
Sbjct: 713  -----KKLQIGNLVTAKVTQKTEDDIFVELVEGS-LKAILPVRHLTDKSVSKTQSALKKI 766

Query: 791  --SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 848
              + ++ +  +L+  +A R + LS K   ++    A   +      R R      G  + 
Sbjct: 767  HVNQTLTELVVLEKNEARRSIILSHKPSLVE---AAKKGKLLHTIDRARVGDVVPGFIRN 823

Query: 849  VNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS 907
            + A    V+    L   LP+             + Q  P   F   QSV   + ++    
Sbjct: 824  ITATAAFVQFAGRLTALLPKTKLP--------RDIQDKPSFGFQKLQSVTVKITSV--DK 873

Query: 908  TAGRLLLLLKAIS----ETETSSSKRAKKKSSYD----------VGSLVQAEITEIKPLE 953
               R+++ + +      + + SS    K  ++ D          +G + +A +   K  +
Sbjct: 874  DLNRIVVAIPSEGGEDVQAKASSKSADKAMNALDLSVLTMEDLPIGKITKARVKSAKDTQ 933

Query: 954  LRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARII----AKSNK--PDM 1005
            + +       GRI +++V D   ++  V+     FK G  +  R++    A++++  P  
Sbjct: 934  INVDLADNIQGRIDVSQVFDKFEDIRSVKKPLGKFKTGDIIDVRVLGIHDARNHRFLPIS 993

Query: 1006 KKS--FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1063
             +S   + ELS KPS L        L + + +V  GQ    +V  V      + +S +++
Sbjct: 994  HRSSHTVLELSAKPSDLQEGSTPEPLSYAKLEV--GQTHLAFVNNVAQNHIWVNLSPNVR 1051

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
             ++  ++ + + S+LQ+  + F IG  +   V+ ++ E+  L L  R           D 
Sbjct: 1052 GRISAVELSDDLSKLQDVAKSFPIGSVLQVRVIHVDAERNRLDLSAR-----------DP 1100

Query: 1124 SNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            + +N  T+  I +G ++ G+++K    V  + V++   + G V   +L +         Y
Sbjct: 1101 NAENPLTWDKIQKGMVLPGKVTKTTDNV--VFVKLSESVAGPVFLCDLAD--------DY 1150

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
            +E   +PL  + + + V+  VL+I ++ +    + LS+R S           LS+ ++  
Sbjct: 1151 EEA--NPLK-HSKHEIVRVAVLDIDKSNK---RLRLSMRPS---------RVLSSRLEVT 1195

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
             K + K   ++   +++G+VKNV+ KG F+ L   + A V + NLSD Y++  ++ F I 
Sbjct: 1196 DKEITKDTKIAVGDVLRGFVKNVSDKGLFVTLGGDIVAMVQIKNLSDSYLKDWKEHFQID 1255

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            +LV GR++SV   + R+E++L+ S         I   S+L  G IV G++++VE +G FI
Sbjct: 1256 QLVKGRIISVS--NGRLEMSLRPSILSKDYVPPIT-FSDLKEGQIVTGKVRKVEDFGAFI 1312

Query: 1362 TIENTN-LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1420
             I+ ++ L GLCH SE+++  + + + +Y  G+KVK ++LKV+++ +RI+LG+K SYFK+
Sbjct: 1313 DIDGSDRLSGLCHRSEMADRAIKDAKALYSEGDKVKARVLKVEEKTKRINLGLKPSYFKD 1372

Query: 1421 DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM-ESEDGGSLVL---AQIES 1476
            D +    S E+                    +++  +D DM ++  GG+LV+   +  E 
Sbjct: 1373 DDEMDVDSDEDA------------------GAALDSEDEDMSDAGAGGALVINADSDDED 1414

Query: 1477 RASVPPLEVNLDDEQPD-----MDNGISQNQGHTDE----AKTIDEKNNRHAKKKEKEER 1527
                    V +DD Q +        G S N    DE    A + DE   +  +++++E R
Sbjct: 1415 DDDDADSNVEMDDAQTEGVKGLETGGFSWNADALDEDDKAAGSTDEPIKKKKQQQQRESR 1474

Query: 1528 EQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1587
             Q  R AE   L+ + P+T  ++ERL+   P+SS +WI YMAF + ++D+  AR +AERA
Sbjct: 1475 AQVDRTAE---LDVNGPQTTSDYERLLLGQPDSSELWIAYMAFQMQVSDLASARQVAERA 1531

Query: 1588 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1647
            ++TINI+EE EKLN+W+AY NLE  YG   EE V ++F+RA  Y D ++V+  L   Y +
Sbjct: 1532 IKTINIKEELEKLNVWIAYLNLEVAYGT--EETVEELFKRACTYNDEQEVYERLASSYIQ 1589

Query: 1648 TEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHI 1704
            + + K AD+L  K+IKKF   S  VW+     L  +  + +  +A++ RA  SL   K +
Sbjct: 1590 SGKLKEADDLFEKIIKKFGSKSPSVWINYAHFLHTKYDRPDKARALLPRAEKSLGGGKPV 1649

Query: 1705 --KFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD--LIR 1758
              + + + A LEF+  NG  ++GRS+FE IL+ +PKR DLW+ ++D E  +G  D   +R
Sbjct: 1650 ILELMPKFAALEFRSSNGDREQGRSLFETILAAFPKRFDLWNQFVDLETSVGTSDPATVR 1709

Query: 1759 GLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804
             LF+R   +  L PK+ K  FK++ ++E   G+++  E V  KA E+
Sbjct: 1710 DLFDRGSKVKGLKPKQAKTWFKRWAQWEDKNGDKKSRERVSAKAQEW 1756



 Score =  232 bits (592), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 313/1256 (24%), Positives = 551/1256 (43%), Gaps = 130/1256 (10%)

Query: 9    GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA-------------NED 55
            G  + G V  +N  D+ + LP  L G      A+  I    ++A             +++
Sbjct: 139  GSLVLGTVCGINLTDVAVALPNNLVGHVPIT-AISDIFTQRLQAIAEKDEEEDQADEDDE 197

Query: 56   NL-LPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 113
            N+ L TIF +GQ V   V+   DD  +   KR I LSL+ +L   G+S + + E   L A
Sbjct: 198  NIDLQTIFRMGQYVRAYVVSTHDDSVDGKPKRHIELSLQPALANSGMSEQDIVENTTLMA 257

Query: 114  YVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI---DVKPGLLLQGVVRSIDRTRKV 168
             V S+EDHG+++   +      GFLPR  L  + GI    V+PG +L  +  S   + KV
Sbjct: 258  SVVSVEDHGFVMDVNISDSKLKGFLPRKQL--DKGIPEESVQPGSVLLCIATSKAASGKV 315

Query: 169  VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 228
            V LS+  D +    +   +  +ID  +PG      V  + E+G++   + +   T D+ H
Sbjct: 316  VQLSTLEDRIGSIKSFPSEATTIDSFLPGTAADILVSEVTEHGLVGKVMGHLDVTADLVH 375

Query: 229  LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLHNRAPPSHVKVG--- 283
                    +  ++Y    ++ ARI+   PT+R   +G++L P++L  +   +  K G   
Sbjct: 376  SNAGPGAVDIVDEYKVGSRIKARIICNFPTARKPKLGISLLPHVLSLKPKIAKTKNGIES 435

Query: 284  ---DIYDQSKVV------RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKK 331
               DI   S ++      RV+  +GL +D+    V  P +V IS V + +V  L      
Sbjct: 436  LPVDILAHSTIIEKCTVQRVEPEIGLYVDVGVEGV--PGFVHISRVKDGKVDSLFETSGP 493

Query: 332  YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA 389
            YK GS    R++G+   +G+    ++ S  E       D+  G+VV G V  + V+  G 
Sbjct: 494  YKVGSVHAARVVGYNPFDGMYNLSMEKSVLEQPFLRIQDIPVGVVVPGVVEKLVVNEHGL 553

Query: 390  ---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTL 444
               IV+   G+  L P  H+S+  +  P KKF+ G ++  RVL     R  + +T KKTL
Sbjct: 554  GGLIVKVAEGISGLVPEMHLSDVHLQHPEKKFREGMKVKTRVLSTNPARHQLRLTLKKTL 613

Query: 445  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 504
            V S    + SY E    L T G I K+   G  V+FY  ++GF P SE+      +P   
Sbjct: 614  VNSDAPPVKSYDELAVGLQTFGTIVKLLDRGAIVQFYGQLRGFLPVSEMSEAYIQDPKEH 673

Query: 505  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVDVVTPNA 559
            +  GQ +   ++S  P  +R+ +S    P+    +  V L     G+LV+  V   T + 
Sbjct: 674  FREGQTISVYVLSFDPEEKRMIVS-CKDPSAFGLEKQVALKKLQIGNLVTAKVTQKTEDD 732

Query: 560  VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLL 614
            + V ++ +G  K  +P  HL D  +  +  +S +K         +L+VL+ NE+  +++L
Sbjct: 733  IFVELV-EGSLKAILPVRHLTD--KSVSKTQSALKKIHVNQTLTELVVLEKNEARRSIIL 789

Query: 615  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 672
            S K SL+ +A+  +L           VV G++ NI  T  FV+F GRLT   P++K    
Sbjct: 790  SHKPSLVEAAKKGKLLHTIDRARVGDVVPGFIRNITATAAFVQFAGRLTALLPKTKLPRD 849

Query: 673  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 732
             +   S  +   QSV   I  V+ +  RI +++         A    +    ++ +  L 
Sbjct: 850  IQDKPSFGFQKLQSVTVKITSVDKDLNRIVVAIPSEGGEDVQAKASSKS--ADKAMNALD 907

Query: 733  SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG------ 786
             S      +  +E   IG + + +V  + D  + V   ++  + G I   Q+        
Sbjct: 908  LS------VLTMEDLPIGKITKARVKSAKDTQINVDLADN--IQGRIDVSQVFDKFEDIR 959

Query: 787  ------ATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKRE 838
                     ++G +I   +L +  A+  R + +S ++        A  +   +    +  
Sbjct: 960  SVKKPLGKFKTGDIIDVRVLGIHDARNHRFLPISHRSSHTVLELSAKPSDLQEGSTPEPL 1019

Query: 839  ASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSV 896
            +   L V QT  A V  V +N++ ++L P     I    +S D +  +   K F  G   
Sbjct: 1020 SYAKLEVGQTHLAFVNNVAQNHIWVNLSPNVRGRISAVELSDDLSKLQDVAKSFPIGS-- 1077

Query: 897  IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL 956
            +  V  +   +   RL L  +  +     +  + +K      G ++  ++T+     + +
Sbjct: 1078 VLQVRVIHVDAERNRLDLSARDPNAENPLTWDKIQK------GMVLPGKVTKTTDNVVFV 1131

Query: 957  KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIK 1016
            K      G + + ++ DD         S  +I + V    I KSNK          LS++
Sbjct: 1132 KLSESVAGPVFLCDLADDYEEANPLKHSKHEIVR-VAVLDIDKSNK-------RLRLSMR 1183

Query: 1017 PSMLTVS--EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI--LDSA 1072
            PS +  S  E+  K + ++  +++G  + G+V  V ++   +T+   + A + I  L  +
Sbjct: 1184 PSRVLSSRLEVTDKEITKDTKIAVGDVLRGFVKNVSDKGLFVTLGGDIVAMVQIKNLSDS 1243

Query: 1073 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ--T 1130
            Y    L++++  F I + V G ++S++  +  L + LRP           +S D +   T
Sbjct: 1244 Y----LKDWKEHFQIDQLVKGRIISVSNGR--LEMSLRPSI---------LSKDYVPPIT 1288

Query: 1131 F--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1184
            F  + EG IV G++ K+      + +     L G  H +E+ +  + D  + Y EG
Sbjct: 1289 FSDLKEGQIVTGKVRKVEDFGAFIDIDGSDRLSGLCHRSEMADRAIKDAKALYSEG 1344


>gi|390604643|gb|EIN14034.1| U3 snoRNP-associated protein Rrp5 [Punctularia strigosozonata
            HHB-11173 SS5]
          Length = 1502

 Score =  371 bits (953), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 345/1241 (27%), Positives = 610/1241 (49%), Gaps = 160/1241 (12%)

Query: 629  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 688
            S+ S I P ++V   +  ++ +G  ++ LG   G         G   D   TY  G  ++
Sbjct: 350  SNVSSILPGAMVQCLITAVVPSGLNLQVLGYFEGTVDLFHLPYGTPGD---TYKNGSKIK 406

Query: 689  SNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFL---LEEKIAMLQSSKHNGSELKW 743
            + IL   S T   R  LSL              EH L   ++ + A +  S    S L+ 
Sbjct: 407  ARILYDLSATSPRRFALSLA-------------EHILTLSMKGRAAAVDGSSKPLSLLQ- 452

Query: 744  VEGFIIGSVIEGK--VHESNDFGVVVSFEEHSDVYGFITH---HQLAGATVESG-----S 793
             + F +G+ +E    +    + G+V+   + ++ Y  I+      +A  +  SG     +
Sbjct: 453  -DDFPVGTTLEAAKVIRVEPERGLVLEVSDDTNGYVHISQVSDDHVAALSSSSGPWRVST 511

Query: 794  VIQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 852
            + +A +      + L+ LSL+ +V   RF +                 +D  V + +   
Sbjct: 512  IHRARVTGYHALDGLLQLSLRPSVLEKRFIQV----------------RDAEVGEVIKGT 555

Query: 853  VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 912
            V+ + ++ L + +      + + +     T K PQK+F  G S+   V+A+       R 
Sbjct: 556  VKKLTDSALFVEISGNVDGVVWPNHYADITLKHPQKRFKPGGSIKCRVLAV----NPERN 611

Query: 913  LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 972
             + L A      S     K+     VG +  A I  +    L+++F       +   E +
Sbjct: 612  RISLTAKKTLVESPLPIVKQVEDAIVGLVTHAVIFRVSDKGLQVEFFNNLKAFVPRKEAS 671

Query: 973  DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSM--LTVS---EIGS 1027
            D    +  +L +   +G+ V  RI                LS+ P+   +T S    + +
Sbjct: 672  D---IMGVDLSATIPVGKPVKVRI----------------LSVDPATGRITASIRQAVDA 712

Query: 1028 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1087
            +      DV++G  V+G V ++  +  LL++       L  L++      +   Q R  +
Sbjct: 713  QSASPVADVNVGDVVSGSVAELHKDNVLLSLKPSQAKGLLSLNNLANYRGISASQLRASL 772

Query: 1088 GKAVTGHVL------SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1141
               VTG +L      S N  K ++ +  +P       +   +S D ++     G +VGGR
Sbjct: 773  ---VTGEMLNNLVVVSRNANKGIVIVATKPVVRAPMTQGSALSMDTVEV----GSVVGGR 825

Query: 1142 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1201
            +  +     G ++++   + G +H T+    C  +    ++EG   P         +K  
Sbjct: 826  V--LRHTRKGALIKLNARITGLLHPTD----CTDN----FEEGNAFPAVD----SILKAV 871

Query: 1202 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1261
            V+E+ ++      + LS+R S    +S N+      V+ P   +  I DL     ++G++
Sbjct: 872  VVEVDKSRN---QLVLSMRRSRMDPTSNNT------VEDP--EVLAIADLQAGQTIRGFI 920

Query: 1262 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1321
            K+V+  G ++ML R +DA+V +  L D YV+  +  F   ++V GR+LSV+   K+VE++
Sbjct: 921  KSVSEHGLYVMLGRNIDARVQIRELFDEYVKDWKSRFSPNQIVKGRILSVDQDKKQVEMS 980

Query: 1322 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1381
             ++  S + S++++  LS+L  G  + G++K+VE YG+FI +E + L GLCH +++S++ 
Sbjct: 981  FRSVSSSSGSKTKLL-LSDLTEGQKIEGKVKKVEDYGIFIELEGSKLSGLCHKTQISDNP 1039

Query: 1382 VDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYF------KNDADNLQMSS--- 1429
              ++      +R G+KVK  +L VD EKRRISLG+K SYF        D    + SS   
Sbjct: 1040 DADVNLALRSFREGDKVKAMVLSVDHEKRRISLGLKPSYFTEADFESGDESGSETSSHIG 1099

Query: 1430 -------EEES---DEAIEEVGSYNRSSLLENSSVAVQDM--DMESEDGGSLVLAQIES- 1476
                   +EE+   +E + +V S + ++  EN S A   M  D+E+   G+    Q  S 
Sbjct: 1100 ILSEGHIDEEAVSPEEDMNDVASSHFNNDAENDSDADHTMQVDVEALTTGANDARQDYST 1159

Query: 1477 -RASVPPLEVNLDDE---QPDMDNGISQNQGHTDEAKTIDEKNNRHA---KKKEKEEREQ 1529
             +++  P ++ L  E   Q    +  + ++    E+ + DE N+  A   K+K +++ EQ
Sbjct: 1160 EQSTSAPKDLILKLEGGFQWSAKDSATHDEESGSES-SADEDNDESATQRKRKRRKQIEQ 1218

Query: 1530 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            ++ A     L    P +  +FER++ SSP+SS++WI+YM+F+L M++V++AR I  RAL+
Sbjct: 1219 DLTAD----LHNKMPESTADFERVLLSSPDSSYLWIQYMSFLLQMSEVDRAREIGRRALR 1274

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
            TIN REE EKLN+W+A  NLEN YG   +E++  VF+ A +  D K +HL L  +++++ 
Sbjct: 1275 TINFREEQEKLNVWIALLNLENVYGT--DESLESVFKEAARSNDSKTIHLRLASIFDQSG 1332

Query: 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1708
            ++++A+E   +  KKF HS KVW    +  LK+ + E  + ++ R+L SL + KH+K IS
Sbjct: 1333 KHEMAEEQYKRTAKKFGHSSKVWTLYGEHYLKRGEHEQARKLLPRSLQSLEKRKHLKTIS 1392

Query: 1709 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1768
            + A LE+K G A+RGR++FEGI+  + KR D+W+IY+D E    ++  +R LF+R ++  
Sbjct: 1393 KFAQLEYKYGDAERGRTIFEGIVDSHSKRWDIWAIYMDMEAGQSNIQGLRNLFDRVLTQK 1452

Query: 1769 LPPKKMK---FLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            +   K K     FKK+LE E+S+G+E+  E VK KA+E+ +
Sbjct: 1453 MTSHKAKRVPSFFKKWLELERSIGDEDGAEIVKAKAIEWTQ 1493



 Score =  227 bits (578), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 218/814 (26%), Positives = 375/814 (46%), Gaps = 91/814 (11%)

Query: 6   ISAGMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPILDNEIEANED 55
           I+ GMK+ G +  V    L++ LP  L G          L  A +A+D   + E +A E 
Sbjct: 127 ITTGMKILGQIVAVQPLALIVSLPNQLMGHIPITQISSQLTSALEAMDEGDETESDAMES 186

Query: 56  NL--------------LPTIFHVGQLVSCIVLQL----DDDKKEIG----------KRKI 87
           +               L  IFHVGQ V C+V  +      D   +G           R++
Sbjct: 187 DSRASPSRPHKPRIPELFDIFHVGQFVRCVVTAIHTPGTTDNTGLGLKGRGDLEKASRRV 246

Query: 88  WLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI 147
            LS+   L+  G+    ++ G  L+A +KS+EDHGY+L  G+            A+ +  
Sbjct: 247 ELSVAPHLVNAGVVKADLKPGFTLSAAIKSVEDHGYVLDLGMGDGISAFLSFEAAKQAPW 306

Query: 148 DVKPGLLLQGVVR----SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 203
           + + GL +  VV     S+ ++ +   +S DP+  +     ++  +S   ++PG MV   
Sbjct: 307 NTEAGLCVGQVVDVNIVSLAKSGRTCTVSVDPEVFTSVSLSEVSNVSS--ILPGAMVQCL 364

Query: 204 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDPTS-RA 261
           + +++ +G+ L  L YF GTVD+FHL    P   +KN      K+ ARIL+ +  TS R 
Sbjct: 365 ITAVVPSGLNLQVLGYFEGTVDLFHLPYGTPGDTYKNG----SKIKARILYDLSATSPRR 420

Query: 262 VGLTLNPYLL----HNRA--------PPSHVK----VGDIYDQSKVVRVDRGLGLLLDIP 305
             L+L  ++L      RA        P S ++    VG   + +KV+RV+   GL+L++ 
Sbjct: 421 FALSLAEHILTLSMKGRAAAVDGSSKPLSLLQDDFPVGTTLEAAKVIRVEPERGLVLEVS 480

Query: 306 STPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFE 362
                T  YV IS V+++ V  L      ++  +  R R+ G+  L+GL    L+ S  E
Sbjct: 481 D---DTNGYVHISQVSDDHVAALSSSSGPWRVSTIHRARVTGYHALDGLLQLSLRPSVLE 537

Query: 363 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 422
                  D + G V+KG V  +      V+  G V  +    H ++  +  P K+FK G 
Sbjct: 538 KRFIQVRDAEVGEVIKGTVKKLTDSALFVEISGNVDGVVWPNHYADITLKHPQKRFKPGG 597

Query: 423 ELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 480
            +  RVL V  +R  I++T KKTLV+S L I+    +A   L+TH  I ++   G  V F
Sbjct: 598 SIKCRVLAVNPERNRISLTAKKTLVESPLPIVKQVEDAIVGLVTHAVIFRVSDKGLQVEF 657

Query: 481 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
           +N ++ F PR E     G + S+   VG+ VK RI+S  PA+ RI  S        S   
Sbjct: 658 FNNLKAFVPRKEASDIMGVDLSATIPVGKPVKVRILSVDPATGRITASIRQAVDAQSASP 717

Query: 541 L--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE-HATVMKSVIKPGY 597
           +  V +G +VSG V  +  + V++  +    +KG +   +LA++    A+ +++ +  G 
Sbjct: 718 VADVNVGDVVSGSVAELHKDNVLLS-LKPSQAKGLLSLNNLANYRGISASQLRASLVTGE 776

Query: 598 EFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETGCFV 654
             + L+V+  N +  +++ A   ++ +     S  S   +   SVV G V      G  +
Sbjct: 777 MLNNLVVVSRNANKGIVIVATKPVVRAPMTQGSALSMDTVEVGSVVGGRVLRHTRKGALI 836

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
           +   R+TG    +   D    + +    V   +++ +++V+    ++ LS+++S    T 
Sbjct: 837 KLNARITGLLHPTDCTDNFE-EGNAFPAVDSILKAVVVEVDKSRNQLVLSMRRSRMDPTS 895

Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 748
            + +++  +L   IA LQ+ +        + GFI
Sbjct: 896 NNTVEDPEVL--AIADLQAGQT-------IRGFI 920


>gi|351715635|gb|EHB18554.1| RRP5-like protein [Heterocephalus glaber]
          Length = 1809

 Score =  370 bits (950), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 369/1378 (26%), Positives = 620/1378 (44%), Gaps = 158/1378 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVAQEEPLKDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  +   ++  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  RLPELFSPGMLVRCVVSSVSITER--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +  +  V  L
Sbjct: 196  SLEDHGYLVDIGVVGTRAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKSSGGVASL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S +   +S  +    +  S++ L+PG++V  +VQ + + G+ L+FLT+FTG VD  HL +
Sbjct: 256  SIEQSAISTAIATQEQNWSLNNLLPGLVVKAQVQKVTQFGLTLNFLTFFTGLVDFMHLDS 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQ 288
                T + N     + V A IL V P +RAV L+L P  L    P + +    +G +   
Sbjct: 316  KKVGTYFSN-----QAVRACILCVHPRTRAVRLSLRPIFLQPGRPLTQLSCQHLGAVMKD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V       G    +    +   AY  +S +++ +     + +K G+  + RI  +  +
Sbjct: 371  VPVQGFFNKAGATFKLKDGAL---AYARLSHLSDSKNAFRPETFKPGNMHKCRITDYSPM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            +GLA   L+ S  E     + D+K G VVKG V+ +  FG +V+    V+ L P  H+++
Sbjct: 428  DGLALLSLRTSVIEAQYLRYHDIKTGAVVKGTVLTMRPFGMLVKVGEQVRGLVPATHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK++VGAE+  RVL    ++K++ +T KKTLV SKL +++ Y +A   L THG
Sbjct: 488  ILMKNPEKKYQVGAEVKCRVLLCDPEAKQLIMTLKKTLVTSKLPVITCYEDAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
             I + + +GC VRFYN VQG  P+ ELG     +P   ++ GQVVK  +++  PA  R+ 
Sbjct: 548  VIHRAKDYGCIVRFYNDVQGLVPKHELGAQCIPDPEKAFYAGQVVKVAVLNCEPAKERML 607

Query: 527  LSFMMKPTRVSEDDLVKLGSLVSGVVDV----VTPNAVVVYVIAKGYSKGTIPT---EHL 579
            LSF +      +++ V  G      V V    + P A  V+V    + +  +     E  
Sbjct: 608  LSFKLLSDPEPKNERVGCGQKKRKDVGVGQAGLLPVAEQVFVFL--FPEQLVDVKVLEKT 665

Query: 580  ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 639
             D L+ A +  ++  P   F     L +  +N  L  ++     A Q P   S I P  +
Sbjct: 666  KDGLQVAVLPHNI--PA--FLPTPHLSDHVANGPLVHRWLQAVEAGQDPKSFSEIQPGML 721

Query: 640  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
            + G+V +I + G FV+F   L+G AP++   D    + S  +  GQ+V + + +V+ E  
Sbjct: 722  LVGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTNPSDHFVEGQTVVAKVTNVDEEKQ 781

Query: 700  RITLSLKQSCC---SSTDASFMQEHFLLEE--KIAMLQSSKHNGSELKWVEGFIIGSVIE 754
            R+ LSL+ S C        S +     LEE   +  L SS+ +   ++ +     G V+ 
Sbjct: 782  RMLLSLRLSDCRLGGPASGSLLLLSQCLEELQGVRSLMSSR-DSVLVQALAEMTPGMVLN 840

Query: 755  GKVHE-SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 813
              V E S D  VV +     D+    + +  AG  VESG   +A IL V      V +SL
Sbjct: 841  LVVQEVSEDGSVVFTGAPVRDLVLRASRYHRAGQEVESGQKKKAVILYVDMLGLEVHVSL 900

Query: 814  KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIG 873
            +   +        NR+A K K+         VHQ   A V+ ++E++ V S+ E  H + 
Sbjct: 901  RKELV--------NRKAWKLKKG-------SVHQ---ATVQHLEESFAVASVGETGHLVA 942

Query: 874  YASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLL---------LLLKAISETE 923
            ++  S  N T +F  ++   GQSV   V+        G LL         +L +   ++E
Sbjct: 943  FSLASHLNDTFRFDSEKLQVGQSV-CLVLKTAEPGVTGLLLAVEGPAARRVLRQPCKDSE 1001

Query: 924  TSSSKRA---------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 974
                            +KK    +G +V   +  +KP  + +    G  G +H + V D+
Sbjct: 1002 MGDEGEGADPALAAGPRKKHGLAIGDVVTGTVKSVKPTHVVVTLEDGVMGCVHASHVLDE 1061

Query: 975  KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC 1034
                     +  K+G+TVTAR+I   +     K+F  EL  K     ++   +  + +  
Sbjct: 1062 VPEGAAPT-ATLKVGKTVTARVIGGRD----VKTF-NELE-KDGHTVLNTYSASPVEKIQ 1114

Query: 1035 DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1092
                GQ VT ++  Y V  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+ 
Sbjct: 1115 QYRAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQALR 1174

Query: 1093 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1152
              V+  +  K  L L L             I    ++    +G++  GR+ K+    G  
Sbjct: 1175 ATVVGPDSSKPFLCLSL-------------IGPHKLK----KGEVAMGRVVKVAPSEGLT 1217

Query: 1153 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1212
            V       +GR     +    VSD    Y E    PL  +   + V+             
Sbjct: 1218 VA----FPFGRTGTVSV--FHVSD---SYSE---RPLQDFSPQKVVR------------- 1252

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
                              + +  + V+ P   +  I D+    +++G+V++V   G  + 
Sbjct: 1253 -----------------TNPETKSKVEDP--EINSILDIKEGQLLRGFVRSVEPSGVLLG 1293

Query: 1273 LSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            L   ++     S++S   +       K  P G+L+  RVL ++P    VE++    D+
Sbjct: 1294 LGPSVEGLARFSHVSQCSLPKKGLYSKYLPEGRLLTARVLRLDPSKNLVELSFLPGDT 1351



 Score =  244 bits (623), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 134/328 (40%), Positives = 203/328 (61%), Gaps = 16/328 (4%)

Query: 1484 EVNLDDEQPDMDNGISQNQGHTDE--AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1541
            +V LD   P +      +    DE       +K ++  ++ EK++ E+E+   EE L + 
Sbjct: 1487 DVGLDTLTPALPPRGENSDSEEDEKPPHATQQKKSKKERELEKQKAEKELSRIEEALRDP 1546

Query: 1542 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1600
               P + D+F+RLV SSP+SS +W++YMAF L   +++KAR++AERAL+TI+ R   E  
Sbjct: 1547 GRQPESADDFDRLVLSSPSSSILWLQYMAFHLQATEIDKARAVAERALRTISFRGAREAE 1606

Query: 1601 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1660
             +  A             E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +
Sbjct: 1607 RVGGA------------AESLSKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNR 1654

Query: 1661 MIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1719
            M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ G 
Sbjct: 1655 MLKRFRQEKSVWIKYGAFLLRRGQAGASHRVLQRALECLPAKEHMDVITKFAQLEFQLGD 1714

Query: 1720 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1779
            A+R R++FE +LS YPKRTD+WS+Y+D  I+ G    +R +FER I L+L PKKMKF FK
Sbjct: 1715 AERARAIFENMLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLNLAPKKMKFFFK 1774

Query: 1780 KYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            +YL+YEK  G E+ +  VK KA+EYVE+
Sbjct: 1775 RYLDYEKQHGSEKDVRAVKAKALEYVEA 1802



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 2/168 (1%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            +  D+    +V+G V  +   G  + +  ++   V  ++L+D  +++PEK++ +G  V  
Sbjct: 446  RYHDIKTGAVVKGTVLTMRPFGMLVKVGEQVRGLVPATHLADILMKNPEKKYQVGAEVKC 505

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            RVL  +P +K++ +TLK +   T+    I    +   G    G I R + YG  +   N 
Sbjct: 506  RVLLCDPEAKQLIMTLKKTLV-TSKLPVITCYEDAKPGLQTHGVIHRAKDYGCIVRFYN- 563

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            ++ GL    EL    + + E  + AG+ VKV +L  +  K R+ L  K
Sbjct: 564  DVQGLVPKHELGAQCIPDPEKAFYAGQVVKVAVLNCEPAKERMLLSFK 611



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 46/87 (52%)

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            G+  +   ++ P M++ G+VK++   G F+     L      + +SD +V +P   F  G
Sbjct: 707  GQDPKSFSEIQPGMLLVGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTNPSDHFVEG 766

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
            + V  +V +V+   +R+ ++L+ SD R
Sbjct: 767  QTVVAKVTNVDEEKQRMLLSLRLSDCR 793



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             + S +  G +++G +K ++ YG+F+    + L GL   + +S+  V N    +  G+ V
Sbjct: 711  KSFSEIQPGMLLVGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTNPSDHFVEGQTV 769

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
              K+  VD+EK+R+ L ++ S
Sbjct: 770  VAKVTNVDEEKQRMLLSLRLS 790


>gi|345324023|ref|XP_001512041.2| PREDICTED: protein RRP5 homolog [Ornithorhynchus anatinus]
          Length = 1838

 Score =  370 bits (949), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 366/1406 (26%), Positives = 645/1406 (45%), Gaps = 166/1406 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLL 58
            QN+S G+ L G V E N+ ++VI LP GLRG  +A   +D     L  ++E  E  ++++
Sbjct: 78   QNLSEGVLLLGCVKESNKYEMVISLPNGLRGFVQATSISDTYTKKLAEQVEREEFLEDVM 137

Query: 59   P--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
            P   ++  G LV C+V  ++  KK  GK+ I LSL    + +GLS  T+  GM+LT  V 
Sbjct: 138  PLSALYLPGMLVRCVVNSIETTKK--GKQSIRLSLNPKEVNRGLSAGTLSPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S EDHGY++  G+     FLPR    E     N G ++K G  L   V  +     +V L
Sbjct: 196  SREDHGYLIDIGVRESKAFLPRKKAQEYISMRNKGSELKLGQYLWCYVEEVKGNGSIVRL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     V+  +  + +  ++D ++PG++V   +Q +  +G+ LSFL+ + G VD  HL  
Sbjct: 256  SIGSAEVASALATEEQNWTLDNVLPGLVVKAVIQKVTPHGLSLSFLSIYRGLVDFLHLD- 314

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQ 288
                      Y   +KV A IL V   ++ V LTL P  LH   P S +    VG + + 
Sbjct: 315  ----PKKSQSYFATQKVKACILSVHRQTKTVRLTLRPNFLHPGLPLSQLSTSLVGTVLEN 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G    +    +   A+     ++  +     +K+  G   + RI+    +
Sbjct: 371  VPVQGFFKKAGATFKLKDGSL---AFARFKHLSNSKKSFNPEKFLPGKTHKCRIIDLSPM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + L    LK          + D++PG +V+GKV+A+  FG +V+    +K + PL H+++
Sbjct: 428  DDLVLLSLKEKIINAPFLQYRDLQPGQLVQGKVLALRPFGVLVEVTDSIKGVVPLLHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
             ++  P KKF +G E+  RVL      K++ +T KKTLV S L +++SY  A  +L  HG
Sbjct: 488  VQLKHPEKKFHLGDEIKGRVLSCIPSMKKLVLTLKKTLVNSDLPVITSYRAAKPQLQAHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +I+KI + GC V FYN V+G  P+  LG+D   +  S++++GQV+K  +++  P   R+ 
Sbjct: 548  FISKITEVGCIVGFYNNVRGLVPKGRLGVDCSEDLKSVFYLGQVIKVTVVNCSPNQERLL 607

Query: 527  LSFMMKPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYV-IAKGYSKGTIPTEHLADHL 583
            LS+  KP   SE       LG +V   V VV    + + V I  G     +P  HL+DH+
Sbjct: 608  LSY--KPMMDSEPAGSAEMLGQMVD--VKVVKKTDMGLQVSILPGNVPAFLPKIHLSDHV 663

Query: 584  EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVH 641
             ++ ++   ++P     ++L L ++    +LS K +LI +A+  Q+      I P  +  
Sbjct: 664  SNSQLLWHWLQPNDILHRVLCLGSKRGRNILSRKPALICAAEEGQVARYFFDIQPGMLFT 723

Query: 642  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 701
            GYV +I++ G FV      TG +PR    D         Y VGQ+V + + DV+ E  R+
Sbjct: 724  GYVTSIMDYGVFVELPFGFTGLSPRVAISDKFVTKTQDHYTVGQTVTALVTDVDEEKQRM 783

Query: 702  TLSLKQSCCSSTDASFMQEHFLLE-----EKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 756
             LSL+ S C+  D + +    L +     + + +L  ++ N + ++++     G  +   
Sbjct: 784  LLSLRLSDCNLRDPATVGFSLLCQCLEELQGVRLLMKNQDN-TLIQFLASLTPGLRLNLI 842

Query: 757  VHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 815
            V E  + G V  S      +    + + + G  +E    ++  +L V   +  V +SL+ 
Sbjct: 843  VQEVLEGGSVTFSGGLGPGLVLSASKYHVGGEKLEPLQRVKTVVLHVDTLKLKVHVSLRP 902

Query: 816  VFIDR-FREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 874
              ++R F++   N Q                     A+V+ +++ +++ SL E    + +
Sbjct: 903  ELLNRKFKKVKLNDQHM-------------------AVVQHLEKEFVIASLVETGQLVAF 943

Query: 875  ASVSDYN-TQKFPQKQFLNGQSVIATV---------MALPSSSTAGRLLLL-----LKAI 919
               S +N T +F  ++   GQ V  T+         + L +   A + ++      L+  
Sbjct: 944  PIASHFNDTFRFDSEKLQLGQGVCLTLRTTEPGDFGLLLATKEPASKRVVPKPQEKLEPT 1003

Query: 920  SETE------------TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 967
             E +               ++ A KK ++ +G LV+  +  +KP  + +    G  G IH
Sbjct: 1004 GEPQEKVGPTRKPQKKVGPTREAVKKHAFSIGELVKGIVRSVKPTYIIVTLESGITGFIH 1063

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK------PDMKKSFLW---ELSIKPS 1018
            ++++ D+   +     +  K  + +TAR+I   +       P     F+    ELSI+PS
Sbjct: 1064 VSQILDE-VPLGTCPTTRLKAKKRITARVIGGKDMRTRRFLPATHSRFIRTVPELSIRPS 1122

Query: 1019 MLTVSEIG-------SKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQL--F 1067
             L  S            L F   +V  G++V  +V  Y +  +   + +S  +  ++   
Sbjct: 1123 ELKASSTALNTHSYSHALKFRGYNV--GKQVICFVKKYNIVEKCLEVEVSPVISGKVPHL 1180

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
            +L  +Y+   L+  +++F +G+A++  V+  +                    +       
Sbjct: 1181 LLSLSYK--VLRHPEKKFKVGQALSAIVVGTD--------------------SSRSLLIL 1218

Query: 1128 MQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1184
              T IH   +G I  G++ K++  V GL V++     G+V    ++           D  
Sbjct: 1219 SLTGIHKLKKGTITMGKVMKVIPDV-GLTVRLPFECAGQVSIFHIQ-----------DSY 1266

Query: 1185 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1244
               PL G+   + VKC VL    + +GT  +ELSLR S    + +N  +   D     + 
Sbjct: 1267 SAVPLEGFKPEKIVKCCVL----STKGTM-MELSLRLS---RTKSNYQEKVED-----RE 1313

Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIG 1301
            +  ++D+    +++GYVK+V  +G FI +S  +  +V    +S   V + +   K    G
Sbjct: 1314 VTSLDDVKEGELLRGYVKSVEHQGVFISISSTVVGQVQYQCVSQYLVSNQKLYNKYLRKG 1373

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDS 1327
             L+  +VLSV      VE++L   D+
Sbjct: 1374 MLLTTKVLSVNKEQNLVELSLLPQDT 1399



 Score =  271 bits (692), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 137/284 (48%), Positives = 193/284 (67%), Gaps = 4/284 (1%)

Query: 1525 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1583
            ++ E+E+   E  L++    P T D+F+RLV SSPNSS +W++YMAF L   +++KAR++
Sbjct: 1549 QKAEKELSRIEATLMDPSRQPETADDFDRLVLSSPNSSILWLQYMAFHLHATEIDKARAV 1608

Query: 1584 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1643
            AERAL+ I+ REE EK N+WVA  NLEN YG+  EE++ KVF+RA+QY D  KV L L  
Sbjct: 1609 AERALKIISFREEQEKFNVWVALLNLENMYGS--EESLTKVFERAVQYNDSLKVFLQLAD 1666

Query: 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHK 1702
            +Y ++E+   A+EL  KM+K+F+    VWL+    LL++ Q E    ++ RAL  LP   
Sbjct: 1667 IYAKSEKYTEAEELYGKMLKRFRQEKSVWLKYSAFLLRRGQFEANHQLLHRALKCLPDKD 1726

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
            H+  IS+ A LEF  G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1727 HVDVISKFAQLEFHLGDAERAKAIFESTLSNYPKRTDIWSVYIDMTIKHGSQKEVRDIFE 1786

Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            R I LSL  K+MKF FK+YL+YEK  G  E ++ VK+KA+EYVE
Sbjct: 1787 RVIHLSLAAKRMKFFFKRYLDYEKQHGSPETVQAVKEKAVEYVE 1830



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 150/353 (42%), Gaps = 67/353 (18%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG--------DIVGG 1140
            + V   +LS++++ K +RL LRP                   F+H G         +VG 
Sbjct: 325  QKVKACILSVHRQTKTVRLTLRP------------------NFLHPGLPLSQLSTSLVGT 366

Query: 1141 RISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1197
             +  +   V G   + G       G + F   K++  S+    ++  +F P      G+ 
Sbjct: 367  VLENV--PVQGFFKKAGATFKLKDGSLAFARFKHL--SNSKKSFNPEKFLP------GKT 416

Query: 1198 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1257
             KC+++++S        V LSL+  +              ++ P     +  DL P  +V
Sbjct: 417  HKCRIIDLSPM---DDLVLLSLKEKI--------------INAP---FLQYRDLQPGQLV 456

Query: 1258 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1317
            QG V  +   G  + ++  +   V L +L+D  ++ PEK+F +G  + GRVLS  P  K+
Sbjct: 457  QGKVLALRPFGVLVEVTDSIKGVVPLLHLADVQLKHPEKKFHLGDEIKGRVLSCIPSMKK 516

Query: 1318 VEVTLKTSDSRTASQSEINNLSNLHVGDIVI---GQIKRVESYGLFITIENTNLVGLCHV 1374
            + +TLK    +T   S++  +++       +   G I ++   G  +   N N+ GL   
Sbjct: 517  LVLTLK----KTLVNSDLPVITSYRAAKPQLQAHGFISKITEVGCIVGFYN-NVRGLVPK 571

Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
              L  D  +++++++  G+ +KV ++     + R+ L  K       A + +M
Sbjct: 572  GRLGVDCSEDLKSVFYLGQVIKVTVVNCSPNQERLLLSYKPMMDSEPAGSAEM 624



 Score = 42.7 bits (99), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 37/247 (14%)

Query: 880  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 939
            Y   + P+K+F  GQ++ A V+   SS +                +   + KK      G
Sbjct: 1186 YKVLRHPEKKFKVGQALSAIVVGTDSSRSL----------LILSLTGIHKLKK------G 1229

Query: 940  SLVQAEITEIKP---LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 996
            ++   ++ ++ P   L +RL F     G++ I  + D  S V       FK  + V   +
Sbjct: 1230 TITMGKVMKVIPDVGLTVRLPFECA--GQVSIFHIQDSYSAVP---LEGFKPEKIVKCCV 1284

Query: 997  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNE 1052
            ++        K  + ELS++ S  T S    K+   E     DV  G+ + GYV  V+++
Sbjct: 1285 LS-------TKGTMMELSLRLSR-TKSNYQEKVEDREVTSLDDVKEGELLRGYVKSVEHQ 1336

Query: 1053 WALLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1111
               ++IS  +  Q+ +   S Y  S  + + +    G  +T  VLS+NKE+ L+ L L P
Sbjct: 1337 GVFISISSTVVGQVQYQCVSQYLVSNQKLYNKYLRKGMLLTTKVLSVNKEQNLVELSLLP 1396

Query: 1112 FQDGISD 1118
               G  D
Sbjct: 1397 QDTGKQD 1403


>gi|326481772|gb|EGE05782.1| rRNA biogenesis protein RRP5 [Trichophyton equinum CBS 127.97]
          Length = 1738

 Score =  369 bits (946), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 375/1406 (26%), Positives = 654/1406 (46%), Gaps = 198/1406 (14%)

Query: 502  SSMYHVGQVVKCRIMSSIPASRRINLSFMM-------KPTRV----SEDDLVKLGSLVSG 550
            ++ YH G  +K R++++ P+S  + L F +        PT       +DDL  +  ++  
Sbjct: 426  TTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGGDDDLPLISDIIPE 485

Query: 551  VVDVVTPNAVVVYV-IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE 608
            V       ++ +YV +     +G +    LAD  ++  + M+   K G   +  ++  + 
Sbjct: 486  VKVTYVDTSLGLYVQLGSTKHQGFVHLSRLADGRVDSISSMEGPYKVGSTHEGRIIGFSA 545

Query: 609  SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE-----TGCFVRFLGRLTGF 663
              NL L +    I   +Q       +   SVV G +  ++       G  V     ++G 
Sbjct: 546  MDNLFLVSLEPKI--IEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDNISGL 603

Query: 664  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 723
             P     D +     K +  G  V   IL V+ +  ++ L+LK+S  +S  A +      
Sbjct: 604  VPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAPW------ 657

Query: 724  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 783
                              K  E    GS   G + +  + G +V F  +  V GF+   +
Sbjct: 658  ------------------KDYESISAGSRSPGTLIKIQNNGAIVQF--YGAVKGFLPVSE 697

Query: 784  LAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 835
            ++ A ++        G V+    L V A+ ERLV +S K           S   A  +  
Sbjct: 698  MSEAYIKDPSQHFTVGQVVNVHALTVDAENERLV-VSCKD---------PSTVTADYQSA 747

Query: 836  KREASKDLGVHQTV-----NAIVEIVKENYLVLSLPEYNHSIGYAS--VSDYNTQKFPQK 888
              +    L V  TV     + ++  ++++ L+  L   + S G ++   S +N  +  QK
Sbjct: 748  FEKVHPGLVVSGTVFEKSSDDLLIKLQDSGLIARLTSNHISDGSSAKRTSTFNRIRVGQK 807

Query: 889  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDV--------- 938
              ++G  V       P    + R LL LK +S+  E S S  A +K +  V         
Sbjct: 808  --MDGLLVHKFA---PYKEDSDRFLLSLKPVSKPKEQSDSNPASEKKAPAVVLNNPIDEE 862

Query: 939  ---------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFK 987
                     G + +A+IT +K  +L +       GRI I+E+ D   ++ +      +F 
Sbjct: 863  LKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLKSFH 922

Query: 988  IGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1038
                +  R++   +  + K         K  ++ELS K S L  SE    L  E+  + +
Sbjct: 923  SKDILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEF-KPLHLEQ--LKV 979

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
            G R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A+   V+ I
Sbjct: 980  GDRHIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVIGI 1039

Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
            + EK  L L  R    G S KT+ +++      + +G I+ GR++KI      ++VQI  
Sbjct: 1040 DAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR--QVLVQIND 1088

Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
            ++ G +   ++ +          D  + +P + + + + ++  V+++    +    +  S
Sbjct: 1089 NVVGAISLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIPNK---KISFS 1134

Query: 1219 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
            +R S           LS+ +      +  I++L    IV+G+++ V + G F+ L   + 
Sbjct: 1135 VRPS---------KVLSSSLPVVDPEITSIDNLKVGQIVRGFIRRVDNIGVFVTLGHDVT 1185

Query: 1279 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1338
            A + +S+LSD +++  + EF + +LV GR+  V+  + ++++TLK S      +     L
Sbjct: 1186 AYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLKKSVLDPNYKPPFT-L 1244

Query: 1339 SNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
              L VG IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y   + VK 
Sbjct: 1245 KELKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKA 1304

Query: 1398 KILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE--AIEEVGSYNRSSLLENSSVA 1455
            K+LKVD EK +I+LG+K+SYF++         EEESD   + +E G      +L+    +
Sbjct: 1305 KVLKVDLEKGQIALGLKASYFRD-------LPEEESDANCSDDEAGGI----MLDAGGDS 1353

Query: 1456 VQDMDMESEDGG--SLVLAQIESRASVPPLEVNLDDEQPD-------MDNGIS-QNQGHT 1505
              D+ M    GG         E        E    +  PD       + +G      G  
Sbjct: 1354 DDDVSM----GGVDLEGEDDEEGEEEEDSDEDIEMENAPDSTKKGGLVTSGFDWTGDGDK 1409

Query: 1506 DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1565
            D+ +  DE        K K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W+
Sbjct: 1410 DQNEAADESAEDDGATKRKKRRKAEIQVDRTGDLDANGPQSVADYERLLLGEPDSSLLWL 1469

Query: 1566 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1625
            KYMAF L + +V+KAR IA+RAL+T++I ++ EKLN+WVA  NLEN +GN  ++ + +VF
Sbjct: 1470 KYMAFQLELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLNLENTFGN--DDTLDEVF 1527

Query: 1626 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQE 1685
            + A +Y D  +++  +  ++ ++ + + ADEL    +KK   S   +       L    E
Sbjct: 1528 KSACEYNDAHEIYDRMTSIFIQSGKAEKADELFQTALKKKVSSTPDFFLNYANFLFDTME 1587

Query: 1686 GVQA---VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDL 1740
              Q    ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DL
Sbjct: 1588 APQRGRDLLPRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERGRTVFEGLLSSFPKRIDL 1647

Query: 1741 WSIYLDQEIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLFKKYLEY 1784
            W++ LD EI++GD + +R LFER + +                 L  K+ KFLFKK+L +
Sbjct: 1648 WNVLLDLEIKVGDEEQVRRLFERVLGIGHGIVAADGTKGGPKKKLKEKQAKFLFKKWLAF 1707

Query: 1785 EKSV---GEEERIEYVKQKAMEYVES 1807
            E+ +   G+ + ++ VK +A +YV S
Sbjct: 1708 EEKIAPEGDTKMVDEVKARAADYVRS 1733



 Score =  150 bits (379), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 171/673 (25%), Positives = 290/673 (43%), Gaps = 66/673 (9%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL------ 57
           + ++ G ++ G V+ +   D+ + LP  L G     +A+   L  ++EA   +       
Sbjct: 166 KRLAVGSRILGQVSSIGLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDED 224

Query: 58  ------------LPTIFHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLSL 102
                       L     VGQ +   V      +DDKK   K+ I LS+       GL+ 
Sbjct: 225 DDDDDDDDDDLELKNYVKVGQYLRAAVTATTRNEDDKKVKNKKHIELSIEPHAANSGLTK 284

Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQG 157
             +     + A V S+EDHG ++  GL      GF+    L   +GID   VK G +   
Sbjct: 285 ADMVVNATVQASVISVEDHGLVMDLGLEENEAKGFISSRELP--AGIDISTVKEGSVFLC 342

Query: 158 VVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLS 215
           +V   + +  V+ LS+D  + +            +I+  +PG      +  +   G++  
Sbjct: 343 IVTGQNASGTVIKLSADLSSAASVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGK 402

Query: 216 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAV--GLTLNPYLLHN 273
            +      VD+ H   +    +    Y+   K+  R++   P+S  V  G ++   +L  
Sbjct: 403 IMGMLDAVVDVIHSGASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKF 462

Query: 274 RAPPSHVKVGD--------IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE--- 322
               + V  GD        I  + KV  VD  LGL + + ST      +V +S +A+   
Sbjct: 463 SPTATLVNGGDDDLPLISDIIPEVKVTYVDTSLGLYVQLGST--KHQGFVHLSRLADGRV 520

Query: 323 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV- 381
           + +  +E  YK GS    RI+GF  ++ L    L+    E   F   DV  G VVKGK+ 
Sbjct: 521 DSISSMEGPYKVGSTHEGRIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIE 580

Query: 382 ---IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKR 435
              I  +   G IV     +  L P  HM++ ++  P KKF+ G ++  R+L V  + ++
Sbjct: 581 KLLIKPEGINGLIVSLTDNISGLVPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKRQ 640

Query: 436 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 495
           + +T KK+L+ S  A    Y   +    + G + KI+ +G  V+FY  V+GF P SE+  
Sbjct: 641 LRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMSE 700

Query: 496 DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSG 550
               +PS  + VGQVV    ++    + R+ +S    P+ V+ D     + V  G +VSG
Sbjct: 701 AYIKDPSQHFTVGQVVNVHALTVDAENERLVVS-CKDPSTVTADYQSAFEKVHPGLVVSG 759

Query: 551 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV----- 604
            V   + + +++ +   G     + + H++D      T   + I+ G + D LLV     
Sbjct: 760 TVFEKSSDDLLIKLQDSGLI-ARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKFAP 818

Query: 605 LDNESSNLLLSAK 617
              +S   LLS K
Sbjct: 819 YKEDSDRFLLSLK 831



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 212/941 (22%), Positives = 380/941 (40%), Gaps = 177/941 (18%)

Query: 485  QGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 541
            QGF   S L        SSM   Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 507  QGFVHLSRLADGRVDSISSMEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 563

Query: 542  VKL-----GSLVSGVVD--VVTPNAVVVYVIA-KGYSKGTIPTEHLAD-HLEHATVMKSV 592
             +L     GS+V G ++  ++ P  +   +++      G +P  H+AD  L+H    +  
Sbjct: 564  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDNISGLVPEMHMADTKLQHP---EKK 620

Query: 593  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 651
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 621  FREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 680

Query: 652  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 681  AIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLVVSCKDPSTV 740

Query: 712  STD--ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
            + D  ++F + H                            G V+ G V E +   +++  
Sbjct: 741  TADYQSAFEKVH---------------------------PGLVVSGTVFEKSSDDLLIKL 773

Query: 770  EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD-------------LSLKTV 816
            ++   +    ++H   G++ +  S      +       LV              LSLK V
Sbjct: 774  QDSGLIARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKFAPYKEDSDRFLLSLKPV 833

Query: 817  FIDRFREANSNRQAQKK----------KRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 866
               +  +++SN  ++KK            + +A +D+ V +   A +  VK+  L + L 
Sbjct: 834  SKPK-EQSDSNPASEKKAPAVVLNNPIDEELKAMEDIVVGRITKAKITSVKDTQLNVVLA 892

Query: 867  E-----YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 921
            +      + S  + S  D   +K P K F +   +   V+ +  +     L +       
Sbjct: 893  DNVQGRIDISEIFDSWEDIKDRKRPLKSFHSKDILPVRVLGIHDARNHKFLPI------- 945

Query: 922  TETSSSKRAKKKSSYDVG---SLVQAEITEIKPLEL-RLKFG---IGF------------ 962
                 S R+ K S Y++    S +QA  +E KPL L +LK G   IGF            
Sbjct: 946  -----SHRSGKVSVYELSTKRSCLQA--SEFKPLHLEQLKVGDRHIGFVNNIAEDCLWLN 998

Query: 963  -----HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII---AKSNKPDMKKSFLWELS 1014
                  GR+ IT+++DD S +  N+  NF IG  +   +I   A+ N+ D+       + 
Sbjct: 999  ISPNVRGRLRITDISDDIS-IRGNIQKNFPIGSALQVAVIGIDAEKNRLDLSA----RIG 1053

Query: 1015 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE 1074
                 LTV            D+S G  + G V K+ +   L+ I+ ++   + ++D A +
Sbjct: 1054 SSAKTLTV-----------ADLSKGMILVGRVTKITDRQVLVQINDNVVGAISLIDMADD 1102

Query: 1075 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD-GISDKTVD---ISNDNMQT 1130
             +++      FH  +A+   V+ ++   K +   +RP +    S   VD    S DN++ 
Sbjct: 1103 YTKVNP--TNFHKNEALRVCVVDVDIPNKKISFSVRPSKVLSSSLPVVDPEITSIDNLKV 1160

Query: 1131 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
                G IV G I ++ +   G+ V +G  +   +  ++L +  + +     DE Q D   
Sbjct: 1161 ----GQIVRGFIRRVDN--IGVFVTLGHDVTAYIRVSDLSDSFLKE---WKDEFQVD--- 1208

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
                 Q V+ ++  + +       ++++L+ S+              +D   K    +++
Sbjct: 1209 -----QLVQGRLTVVDKE---NNKIQMTLKKSV--------------LDPNYKPPFTLKE 1246

Query: 1251 LSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            L    IV G V+ V   G FI +  S  L      S +++  VE   + +    +V  +V
Sbjct: 1247 LKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKV 1306

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVI 1348
            L V+    ++ + LK S  R   + E + N S+   G I++
Sbjct: 1307 LKVDLEKGQIALGLKASYFRDLPEEESDANCSDDEAGGIML 1347



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 156/351 (44%), Gaps = 39/351 (11%)

Query: 83   GKRKIW-LSLRLSLL----YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP 137
            GK  ++ LS + S L    +K L LE ++ G     +V +I +    L+   P+  G L 
Sbjct: 950  GKVSVYELSTKRSCLQASEFKPLHLEQLKVGDRHIGFVNNIAEDCLWLNIS-PNVRGRLR 1008

Query: 138  RNNLAENSGI------DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI 191
              +++++  I      +   G  LQ  V  ID  +  + LS+   + +K +T       +
Sbjct: 1009 ITDISDDISIRGNIQKNFPIGSALQVAVIGIDAEKNRLDLSARIGSSAKTLT-------V 1061

Query: 192  DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 251
              L  GM++  RV  I +  V++       G + +  + + +   N  N +++++ +   
Sbjct: 1062 ADLSKGMILVGRVTKITDRQVLVQINDNVVGAISLIDMADDYTKVNPTN-FHKNEALRVC 1120

Query: 252  ILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLL 302
            ++ VD  ++ +  ++ P  + + + P          ++KVG I  +  + RVD  +G+ +
Sbjct: 1121 VVDVDIPNKKISFSVRPSKVLSSSLPVVDPEITSIDNLKVGQIV-RGFIRRVDN-IGVFV 1178

Query: 303  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 362
             +        AY+ +SD+++  +++ + +++    V+ R+             LK S  +
Sbjct: 1179 TLGH---DVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLKKSVLD 1235

Query: 363  ---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSE 408
                  FT  ++K G +V GKV  V+ +GA +   G   +  LC    M+E
Sbjct: 1236 PNYKPPFTLKELKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAE 1286


>gi|365991395|ref|XP_003672526.1| hypothetical protein NDAI_0K00920 [Naumovozyma dairenensis CBS 421]
 gi|343771302|emb|CCD27283.1| hypothetical protein NDAI_0K00920 [Naumovozyma dairenensis CBS 421]
          Length = 1718

 Score =  366 bits (939), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 339/1208 (28%), Positives = 575/1208 (47%), Gaps = 170/1208 (14%)

Query: 651  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710
            GC V F G LT F P ++  +       +   +GQ+V   IL ++ E  R+ ++    C 
Sbjct: 623  GCIVSFFGGLTAFLPNAEISEVFVKRPEEHLRLGQTVIVKILKMDEEQSRMLVT----CK 678

Query: 711  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSF 769
             S D +  ++                       +E  I G S+++  V E     ++V  
Sbjct: 679  ISNDQAEQKKE---------------------RIEKLIPGRSIVDVTVLEKTKESLIVEL 717

Query: 770  EEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFID 819
            ++  D+ G +    L+ A +E           GS +   ++D     ++ +L+LK   + 
Sbjct: 718  QD-VDLRGVLYVGHLSDARIEQNRAAFKKIVVGSKLTGLVIDKDTRTQIFNLTLKKSLLK 776

Query: 820  RFREANSNRQAQKKKRKREASKDLGVHQTVN--AIVEIVKENYLVLSLPEYNHSIGYASV 877
               + +S       K K + +   G  ++++   I       ++ L LP Y        +
Sbjct: 777  DAEKESSPLSYADLKSKDKTTPLHGYVKSISNKGIFVAFNGKFVGLVLPSYAVESRDIDI 836

Query: 878  SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS----------ETETSSS 927
            S         K F   QSV A +  L +     R LL LK  +          ET     
Sbjct: 837  S---------KVFYINQSVTAYL--LRTDDDNQRFLLTLKEPTNKVTITTNSLETINPVD 885

Query: 928  KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSN 985
               K    +  G+LV+A+I  IK  +L +      HGRI + EV D+ S +   +   S 
Sbjct: 886  PSMKSLKDFTPGTLVKAQIKGIKKNQLNVILADNLHGRIDVAEVYDNLSEIKDTKQPLSG 945

Query: 986  FKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDV 1036
            FK G  V A+II   +    K         K    ELS+K S+L    +  K +    DV
Sbjct: 946  FKKGDIVKAKIIGTHDMKSHKFLPISHHAIKGTALELSLKTSVLGNPVVNMKSI---SDV 1002

Query: 1037 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1096
            S+G  + GYV    +++  LTIS  LKA++ I D A +  +  + +  F +G A+   V 
Sbjct: 1003 SVGDELIGYVNNYTSKFLWLTISPILKAKISIFDLAKDGLKGSDIESNFPLGCALPVTVT 1062

Query: 1097 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1156
            SI+ E  ++ +       G S   + I++      I  GD +  RI+K+      L++ +
Sbjct: 1063 SIDTEHGIINV------KGKSHTVISIAD------IKVGDRLPARITKVTERY--LLLDL 1108

Query: 1157 GPHLYGRVHFTE-LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1215
            G  +      T+ L+N  +S  L    +G+        E + V  KVL +    +    +
Sbjct: 1109 GNGVSALSFATDALENFSLS--LVASFKGK--------ENKLVFVKVLSVDVESK---KI 1155

Query: 1216 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1275
             +SL+S     SS  S D                D+    IV   VKNV+ KG F+ LS 
Sbjct: 1156 HVSLKSDSAKSSSIKSHD----------------DIKQGDIVDALVKNVSDKGIFVYLSG 1199

Query: 1276 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1335
             + A V +S LSD Y++  +K +   + V G+V+  +    R+ +TL+ S+      + +
Sbjct: 1200 SIQAFVPVSKLSDSYLKEWKKFYKPMQHVIGKVVKSDE-DDRILLTLRESEV-NGDLNIL 1257

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEK 1394
               S++ V D+  G +K V  +G+F+ ++NT N+ GL H++E+++    ++ +++  G++
Sbjct: 1258 KGYSDIKVNDVFDGTVKNVTDFGVFVKLDNTVNVTGLAHITEIADTQPKDLSSLFGTGDR 1317

Query: 1395 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV 1454
            VK  +LKV+  K+++SL +K+S F  D+   + +++E+ DE ++ V  YN  S       
Sbjct: 1318 VKAFVLKVNPTKKQLSLSLKASRFSKDSATKKDTAKEDMDEPVD-VIDYNNES------- 1369

Query: 1455 AVQDMDMESEDGGSLVLAQIESRASVPP-LEVNLDDEQPDMDNGISQNQGHTDEAK---- 1509
                 D+ES+         ++ R  V     V+ DD    +  G        D+A+    
Sbjct: 1370 -----DVESD---------VDERPVVTKKTTVSTDDLS--LSTGFDWTASILDQAQDEES 1413

Query: 1510 --------TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSS 1561
                    T+ +K+    KK+  E++  +I           AP +  +FERL+  +PNSS
Sbjct: 1414 EEDEDEDFTVSKKHKHSKKKQIVEDKTIDISTR--------APESVADFERLIIGNPNSS 1465

Query: 1562 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1621
             +W+ YMAF L ++++EKAR +AERAL+TIN REE EK NIW+A  NLEN +G   EE +
Sbjct: 1466 VIWMNYMAFQLQLSEIEKARELAERALKTINFREEAEKQNIWIALLNLENTFGT--EETL 1523

Query: 1622 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLL 1680
              VF+R+ QY D   +H  LL +Y+ +E++  A EL     KKF      +W+     L+
Sbjct: 1524 EDVFKRSCQYMDSFTMHNKLLSIYQMSEKSDKASELYKVTAKKFGSEKVSIWVSWGDFLI 1583

Query: 1681 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1739
             Q Q +  ++++  +L +LP+  HI+ + + A LEF  G  + GRS+ EG++++ PKR D
Sbjct: 1584 SQGQTQEARSILANSLKALPKRSHIEVVRKFAQLEFAKGDPEGGRSLLEGLIADAPKRID 1643

Query: 1740 LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1799
            +W++Y+DQEI++ +   +  LFER ++  +  K+ KF F K+L++E+S  +++ +EYVK 
Sbjct: 1644 IWNVYIDQEIKIKEKKKVEELFERVLTKKVTRKQAKFFFNKWLQFEESQKDDKAVEYVKA 1703

Query: 1800 KAMEYVES 1807
            KA EYV S
Sbjct: 1704 KATEYVNS 1711



 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 173/696 (24%), Positives = 310/696 (44%), Gaps = 77/696 (11%)

Query: 58  LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 111
           LP++   F +GQ + C V+    L+   K+   ++I L++  S +      + +     +
Sbjct: 202 LPSLERYFKIGQWLRCCVITNSALEPKMKKKNSKRIELTIEPSRV-NPFQEDDLLRSTAV 260

Query: 112 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKV-V 169
              VKSIEDHG  L  G+ + TGF+ + +  +   +   PG + L  V +  DR+ +V +
Sbjct: 261 QCSVKSIEDHGATLDLGIENMTGFISKKDCPDFETL--LPGSVFLGNVFKKSDRSVQVNM 318

Query: 170 YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 229
             ++  + +++         S+D +VPG  V    Q I   G+         G +   HL
Sbjct: 319 DFTNKKNKITQIS-------SVDAVVPGQSVDLLCQQITPRGINGKAFGLVPGFIGNAHL 371

Query: 230 QNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYLLH--NRAPP----SHV 280
           +  F   + K+ +     + ARI+ V       + + L++ P++L+  N+       S  
Sbjct: 372 R-VFKEEDLKHKFALGSNIQARIIAVLTNKENDKTLILSILPHILNLENKLKATESLSAF 430

Query: 281 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS-CVR 339
            +G  +D   V   D              S   Y+ + D    +V       +EG+  + 
Sbjct: 431 PIGYKFDSCDVKGRD--------------SDYLYLALDDDRIGQVHSSRVGEQEGTDKLP 476

Query: 340 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGV 397
            R+LGF  ++ +   +      +       D+  G ++ G ++  V S G  ++ F G  
Sbjct: 477 ARVLGFNSVDDVYELVTAPETLKLKYLRTKDIPVGELLTGCEIETVSSKGMKLKIFNGQF 536

Query: 398 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK----SKLAIL 452
            A  P  H+S+  +V P +KFK+G+++  RVL V  K R+ VT KKTLV     S +  +
Sbjct: 537 TATVPSLHISDTRLVYPERKFKIGSKVKARVLNVDEKGRVYVTLKKTLVNIEDDSDIQFI 596

Query: 453 SSYAEA-TDRLITHGWITKIEK---HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 508
           S+YA+A T +  +   +  +E    +GC V F+ G+  F P +E+       P     +G
Sbjct: 597 STYAQAKTIQEKSEKTVATVESFRPNGCIVSFFGGLTAFLPNAEISEVFVKRPEEHLRLG 656

Query: 509 QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSG--VVDVV----TPN 558
           Q V  +I+       R     M+   ++S D       ++  L+ G  +VDV     T  
Sbjct: 657 QTVIVKILKMDEEQSR-----MLVTCKISNDQAEQKKERIEKLIPGRSIVDVTVLEKTKE 711

Query: 559 AVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSA 616
           +++V +      +G +   HL+D  +E        I  G +   L++  +  + +  L+ 
Sbjct: 712 SLIVELQDVDL-RGVLYVGHLSDARIEQNRAAFKKIVVGSKLTGLVIDKDTRTQIFNLTL 770

Query: 617 KYSLINSAQQLPSDASHIHPNS-----VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
           K SL+  A++  S  S+    S      +HGYV +I   G FV F G+  G    S AV+
Sbjct: 771 KKSLLKDAEKESSPLSYADLKSKDKTTPLHGYVKSISNKGIFVAFNGKFVGLVLPSYAVE 830

Query: 672 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            +  D+SK +Y+ QSV + +L  + +  R  L+LK+
Sbjct: 831 SRDIDISKVFYINQSVTAYLLRTDDDNQRFLLTLKE 866


>gi|393218210|gb|EJD03698.1| hypothetical protein FOMMEDRAFT_139869 [Fomitiporia mediterranea
            MF3/22]
          Length = 1462

 Score =  365 bits (937), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 373/1381 (27%), Positives = 643/1381 (46%), Gaps = 186/1381 (13%)

Query: 502  SSMYHVGQVVKCRIMSSIP------------------ASRRINLSFMMKPTRVS----ED 539
            + ++  GQ V+  + S  P                  ASRR+ LS +  P +V+    + 
Sbjct: 194  TDLFQTGQYVRAVVSSVKPPGSTDGQIFSHSKDGVEKASRRVELSLI--PEQVNSGLNKS 251

Query: 540  DLVKLGSLVSGVVDVVTPNAVVVYVI--AKGYSKGTIPTEHLADHLEHATVMKSVI-KPG 596
            DL K  +L + V  V     V+   +    G+ +     +  +D     ++M +++ K G
Sbjct: 252  DLKKGHTLCAAVKSVEDHGYVLNIGLPDVSGFLRFKAQKDGSSDRRRTGSLMNTIVEKMG 311

Query: 597  YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
             +    ++ D+ES            N+ Q+  ++ S + P ++V   V +++ +G  V+ 
Sbjct: 312  DDGRTCILTDSESD---------FKNAIQKEVTNVSSVLPGTLVQALVTSVVPSGLAVQI 362

Query: 657  LGRLTG-----FAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DV-NSETGRITLSLKQSC 709
            LG   G       P S +        +  + VG+ +++ IL DV  +   R  LSLK   
Sbjct: 363  LGSFEGTIDLYHLPSSTS--------ASEFKVGKKLKARILYDVAGTSPPRFALSLK--- 411

Query: 710  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG-KVHE-SNDFGVVV 767
                      EH L    +   + S  +G  ++  E F +G++++  KV     + G+VV
Sbjct: 412  ----------EHVLT---LDAKKRSAESGQSVQ--ESFPVGTMLKSVKVKRVEPERGLVV 456

Query: 768  SFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLK-TV 816
              EE  D+ GF+    ++   V S          G+  QA ++     + ++ LS + +V
Sbjct: 457  GVEE--DLEGFVHISHVSDDHVPSLSSNSGPWKIGTSRQARVVGFHALDGILQLSFRPSV 514

Query: 817  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 876
               +F   +                D+ V + V   V+ + E+ L +S+     ++ + +
Sbjct: 515  LSQKFLRVD----------------DVTVGELVKGTVKKLTESCLFVSINGNVDAMIWPN 558

Query: 877  VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSY 936
                   K PQK+F  G ++   V+ +       R  ++L A      S      K    
Sbjct: 559  HYADIMLKHPQKRFKPGGTLKCRVLVV----EPDRKRIMLTAKKTLVESDLPILSKIEDA 614

Query: 937  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 996
            + G ++   I ++    L ++F       +   EV++     V NL  ++ +G+++   I
Sbjct: 615  EAGMVIHGTICKVLEKSLVVEFYNHLRAVVPAREVSE---TPVTNLAESYAVGKSLKVCI 671

Query: 997  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1056
            ++       +++     SI+ ++      G   +     V +GQ V+G V +V  +  +L
Sbjct: 672  VSVD-----REAGRIVASIRQAL------GESTIGNIKSVEVGQTVSGTVQEVHGDNVVL 720

Query: 1057 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH---VLSINKEKKLLRLVLRPFQ 1113
             +       L  L +          Q R  I          V+S N +K ++ +  RP  
Sbjct: 721  ILEPSRARALISLHNIANRRRKTVEQLRSSITSGEKMEDLVVVSRNLDKGIVIVANRPSP 780

Query: 1114 DGISDKT--VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1171
               S K   +D+S       + EG  V GR+ K+  G  G VV+    + G +H      
Sbjct: 781  KASSSKQEPIDLSA------LSEGSTVVGRVVKL--GKQGAVVKFAGRVTGTLH------ 826

Query: 1172 ICVSDPLSGYDEGQFDPLSGYDE-GQFVKCKVLEISRTVRGTFHVELSLRSS-LDGMSST 1229
                 PL   D+  F+ L         +   ++ I +  +    + LS R S LD     
Sbjct: 827  -----PLDTTDD--FERLIAMPAMDSTITAAIIVIDQKAK---RLTLSTRPSRLD----Q 872

Query: 1230 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1289
            N+ +   D++ PG     IEDL     ++G+VKNV   G F+ + R +DA+V +  L D 
Sbjct: 873  NAKEKVVDLEVPG-----IEDLKVGQRLRGFVKNVAEHGVFVTIGRGIDARVQIKELYDE 927

Query: 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1349
            YV+  +  F   +LV+GR+L +    K+VE+T +++  +T  +     LS+L  G  V G
Sbjct: 928  YVKDWKSGFKENQLVSGRILGINREKKQVEMTFRST--KTLPEKPEKLLSDLTEGQKVDG 985

Query: 1350 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEK 1406
            ++K+VE YG+FI+I+   L GLCH SE++++   ++      +R G+ VK  +L VD EK
Sbjct: 986  KVKKVEDYGIFISIDGAKLSGLCHKSEITDNKDADVTLALRHFREGDPVKAIVLSVDTEK 1045

Query: 1407 RRISLGMKSSYF-KNDADNL--QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES 1463
            R ISLG+K SYF K D ++    M  + E D  I+     +  S  E + V     + E 
Sbjct: 1046 RHISLGLKPSYFSKEDLESQPENMEPDAEVDGDIQMQDEVSGESDAEENKVIEDASEDEE 1105

Query: 1464 EDGGSLVLAQIESRASVPPLEVNLDDEQ----------PDMDNGISQNQGHTDEAKTIDE 1513
                  +   ++S    PP  V    +Q          P      ++ Q    E  T   
Sbjct: 1106 ----DDIEMIVDSSTFAPPTVVPDSPKQNAPLLAPVIAPQGFQWTNEQQQSDAEEATSSS 1161

Query: 1514 KNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAF 1570
             +       +K+ ++++ +  E+ L      RTP+   +FER + +SPNSSF+WI+YM+F
Sbjct: 1162 SDEDSDAPSDKKRKKKKKKTIEQDLTADMQTRTPESVADFERHLLASPNSSFLWIQYMSF 1221

Query: 1571 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1630
             L +A+++KAR I +RALQ I+IREE EKLN+W+A  NLEN YG   +E++  +F+ A +
Sbjct: 1222 QLQLAEIDKAREIGKRALQAISIREEQEKLNVWIALLNLENTYGT--DESLEALFRDAAR 1279

Query: 1631 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQA 1689
            + D K +HL L  +++++ + + A+E   +  KKF  S KVW    +  L++ Q +  + 
Sbjct: 1280 HNDSKTIHLRLANIFDQSGKPEKAEEQYKRTCKKFGQSSKVWTLFGEHYLRRGQADESRK 1339

Query: 1690 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1749
            ++ R+L SL + KH+K IS+ A LE+K G  +RG+++FEGI+  +PKR DLWSIY+D E 
Sbjct: 1340 LLPRSLQSLEKRKHLKTISKFAQLEYKLGDPERGKTIFEGIVDSHPKRWDLWSIYVDMEA 1399

Query: 1750 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
               D+  +R LFER  S  +   K K  FKK+LE E+ +G+EE    VK+KA+E+ + T 
Sbjct: 1400 GQKDIQSVRNLFERVFSHKMTSHKAKSFFKKWLELERRIGDEEGQRIVKEKAIEWTQRTA 1459

Query: 1810 A 1810
            A
Sbjct: 1460 A 1460



 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 209/759 (27%), Positives = 346/759 (45%), Gaps = 67/759 (8%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------------LARAADALDPILD 47
           + I  GMKL G +  V    L++ LP  L G                 A A D  +   +
Sbjct: 123 KRIVPGMKLLGQIVAVYPFSLIVSLPDQLLGHVPITHISSELTSALEAADADDVSEEGSE 182

Query: 48  NEIEANEDNLLPTIFHVGQLVSCIVLQL-------------DDDKKEIGKRKIWLSLRLS 94
           +E  A +   L  +F  GQ V  +V  +               D  E   R++ LSL   
Sbjct: 183 SEGHAKDPPDLTDLFQTGQYVRAVVSSVKPPGSTDGQIFSHSKDGVEKASRRVELSLIPE 242

Query: 95  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLL 154
            +  GL+   +++G  L A VKS+EDHGY+L+ GLP  +GFL      + S    + G L
Sbjct: 243 QVNSGLNKSDLKKGHTLCAAVKSVEDHGYVLNIGLPDVSGFLRFKAQKDGSSDRRRTGSL 302

Query: 155 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 214
           +  +V  +    +   L+         + K++  +S   ++PG +V   V S++ +G+ +
Sbjct: 303 MNTIVEKMGDDGRTCILTDSESDFKNAIQKEVTNVSS--VLPGTLVQALVTSVVPSGLAV 360

Query: 215 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDPTSRA-VGLTLNPYLL- 271
             L  F GT+D++HL    P++   +++   KK+ ARIL+ V  TS     L+L  ++L 
Sbjct: 361 QILGSFEGTIDLYHL----PSSTSASEFKVGKKLKARILYDVAGTSPPRFALSLKEHVLT 416

Query: 272 ---HNRAPPS------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
                R+  S         VG +    KV RV+   GL++ +         +V IS V++
Sbjct: 417 LDAKKRSAESGQSVQESFPVGTMLKSVKVKRVEPERGLVVGVEE---DLEGFVHISHVSD 473

Query: 323 EEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 379
           + V  L      +K G+  + R++GF  L+G+     + S          DV  G +VKG
Sbjct: 474 DHVPSLSSNSGPWKIGTSRQARVVGFHALDGILQLSFRPSVLSQKFLRVDDVTVGELVKG 533

Query: 380 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRIT 437
            V  +      V   G V A+    H ++  +  P K+FK G  L  RVL V+   KRI 
Sbjct: 534 TVKKLTESCLFVSINGNVDAMIWPNHYADIMLKHPQKRFKPGGTLKCRVLVVEPDRKRIM 593

Query: 438 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 497
           +T KKTLV+S L ILS   +A   ++ HG I K+ +    V FYN ++   P  E+   P
Sbjct: 594 LTAKKTLVESDLPILSKIEDAEAGMVIHGTICKVLEKSLVVEFYNHLRAVVPAREVSETP 653

Query: 498 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSLVSGVVDVV 555
               +  Y VG+ +K  I+S    + RI  S    +  + +     V++G  VSG V  V
Sbjct: 654 VTNLAESYAVGKSLKVCIVSVDREAGRIVASIRQALGESTIGNIKSVEVGQTVSGTVQEV 713

Query: 556 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD-NESSNL 612
             + VV+ ++    ++  I   ++A+     TV  ++S I  G + + L+V+  N    +
Sbjct: 714 HGDNVVL-ILEPSRARALISLHNIANR-RRKTVEQLRSSITSGEKMEDLVVVSRNLDKGI 771

Query: 613 LLSAKY--SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG-FAPRSKA 669
           ++ A       +S++Q P D S +   S V G V  + + G  V+F GR+TG   P    
Sbjct: 772 VIVANRPSPKASSSKQEPIDLSALSEGSTVVGRVVKLGKQGAVVKFAGRVTGTLHPLDTT 831

Query: 670 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            D +R  L     +  ++ + I+ ++ +  R+TLS + S
Sbjct: 832 DDFER--LIAMPAMDSTITAAIIVIDQKAKRLTLSTRPS 868



 Score = 47.8 bits (112), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 94/447 (21%), Positives = 177/447 (39%), Gaps = 86/447 (19%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            ++  AGM + G + +V EK LV+     LR +  A +  +  + N  E+         + 
Sbjct: 612  EDAEAGMVIHGTICKVLEKSLVVEFYNHLRAVVPAREVSETPVTNLAES---------YA 662

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL-SLETVQEGMVLTAYVKSIEDHG 122
            VG+ +   ++ +D   +E G+  I  S+R +L    + ++++V+ G  ++  V+ +    
Sbjct: 663  VGKSLKVCIVSVD---REAGR--IVASIRQALGESTIGNIKSVEVGQTVSGTVQEVHGDN 717

Query: 123  YILHFGLPSFTGFLPRNNLA-------ENSGIDVKPGLLLQGVV---RSIDRTRKVVYLS 172
             +L          +  +N+A       E     +  G  ++ +V   R++D+   +V ++
Sbjct: 718  VVLILEPSRARALISLHNIANRRRKTVEQLRSSITSGEKMEDLVVVSRNLDKG--IVIVA 775

Query: 173  SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV------DI 226
            + P    K  +   + I +  L  G  V  RV  + + G ++ F    TGT+      D 
Sbjct: 776  NRPS--PKASSSKQEPIDLSALSEGSTVVGRVVKLGKQGAVVKFAGRVTGTLHPLDTTDD 833

Query: 227  FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV------ 280
            F      P  +          + A I+ +D  ++ + L+  P  L   A    V      
Sbjct: 834  FERLIAMPAMD--------STITAAIIVIDQKAKRLTLSTRPSRLDQNAKEKVVDLEVPG 885

Query: 281  ----KVG--------DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
                KVG        ++ +    V + RG+              A V I ++ +E V+  
Sbjct: 886  IEDLKVGQRLRGFVKNVAEHGVFVTIGRGID-------------ARVQIKELYDEYVKDW 932

Query: 329  EKKYKEGSCVRVRILGFRHLEGLATGILKASAF-----EGLVFTHSDVKPGMVVKGKVIA 383
            +  +KE   V  RILG    +       +++       E L+   SD+  G  V GKV  
Sbjct: 933  KSGFKENQLVSGRILGINREKKQVEMTFRSTKTLPEKPEKLL---SDLTEGQKVDGKVKK 989

Query: 384  VDSFGAIVQFPGG-VKALCPLPHMSEF 409
            V+ +G  +   G  +  LC   H SE 
Sbjct: 990  VEDYGIFISIDGAKLSGLC---HKSEI 1013


>gi|334314101|ref|XP_001378624.2| PREDICTED: protein RRP5 homolog [Monodelphis domestica]
          Length = 1796

 Score =  364 bits (935), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 315/1078 (29%), Positives = 512/1078 (47%), Gaps = 102/1078 (9%)

Query: 6    ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLLP- 59
            +S GM+L G V EVN  +LVI LP  L G  +A    DA    L+ +++  E  ++L P 
Sbjct: 80   LSEGMRLLGCVKEVNNLELVISLPNDLWGYVQATNICDAYTKKLNEQVDREEPLEDLAPL 139

Query: 60   -TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 118
              +F  G LV C V  L    K+   + I LSL    +   LS   ++ GM+LT  V S+
Sbjct: 140  SKLFQPGMLVRCAVSSLKSTSKK--NKSIKLSLNPKDVNGVLSPAALKPGMLLTGTVDSV 197

Query: 119  EDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 173
            EDHGY++  G+     FLP     E     N G  ++ G  L  ++  +      V LS+
Sbjct: 198  EDHGYLVDIGVGGTKAFLPWQKEQEYVKQKNKGTKLQVGQYLNCLIEEVKGNGGSVRLST 257

Query: 174  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
                VS  +  + +  ++D L+PG++V  +VQ +   G+ LSFL+ FTG VD  HL    
Sbjct: 258  IQSEVSAAIATEEQNWTLDNLLPGLVVKAQVQKVTPYGLSLSFLSSFTGLVDFMHLD--- 314

Query: 234  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS---HVKVGDIYDQSK 290
              +     Y Q + V A IL V P +++V LTL+   L    P +   H  +G + +   
Sbjct: 315  --SKKTGHYFQTQMVRACILSVHPRTKSVRLTLHSSFLQAGRPITRLCHHLIGAVLNDVP 372

Query: 291  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 350
            V       G    +    +   AY  I  +++ E     +K+K G+  R R++ F  ++ 
Sbjct: 373  VQSFYTKAGATFRLKDGSL---AYARIRHLSQTEKSFKPEKFKPGNLHRCRVIDFSPMDD 429

Query: 351  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
            LA   LK S  E     + D++PG +VKGKV  + S+G IV+    +K L P  H+++ +
Sbjct: 430  LALLSLKTSIIEAPFLRYHDIQPGQIVKGKVFTLRSYGMIVKVTEQIKGLVPTLHLADVQ 489

Query: 411  IVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
            I  P KK++V  E+  RVL    ++K++ +T KKTLV+S L  L++Y EA   L THG+I
Sbjct: 490  IRNPQKKYRVQDEVKCRVLMCDPENKKLLMTLKKTLVESSLPALTNYKEAKPDLQTHGFI 549

Query: 469  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
            + I+  GC V+FYN V+G  P+ ELG  P   P  +++VGQVVK  ++ S P   R+ LS
Sbjct: 550  SSIKDCGCIVKFYNDVRGLVPQRELGAQPISAPEEVFYVGQVVKVTVLKSEPEQERMLLS 609

Query: 529  F-------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 581
            F       M    +  +  +VK G LV   V   T   + V ++    S   +PT HL+D
Sbjct: 610  FRLSNDKEMESTAQSQKKAMVKTGQLVDVKVKKKTEKGLEVSILPDDIS-ALLPTTHLSD 668

Query: 582  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSV 639
            ++ ++ ++   ++ G    ++L L +   +++L  K +LI++ +  Q P   S   P  +
Sbjct: 669  NVTNSQLLCYWLQAGDILHKVLCLSHSDGHIVLCRKPALISAVESGQDPKVFSEFQPGML 728

Query: 640  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
            + G+V +I   G FV+F   L+G AP+S   D     +S  +  GQ+V + + +V+ E  
Sbjct: 729  LTGFVKSIKAYGIFVQFPSGLSGLAPKSALSDKFVTTISDHFVEGQTVVAKVTNVDEEKQ 788

Query: 700  RITLSLKQSCCSSTDASFMQEHFL---LEE--KIAMLQSSKHN---GSELKWVEGFIIGS 751
            R+ LSL+ S  S  D +      L   LEE   +  L SS+ +    +  +   G ++  
Sbjct: 789  RMLLSLRLSDVSQEDTTASSLTLLSQCLEELQGVRSLMSSRDSVLTQTLAEMTPGLLVDL 848

Query: 752  VIEGKVHESNDFGVVVSFEEHSDVYGFI----THHQLAGATVESGSVIQAAILDVAKAER 807
            V++     S+D  +V S   +  V G +     +HQ  G  V+ G   +A IL V   + 
Sbjct: 849  VVQDM---SSDGSLVFS---NGSVPGLVLRASKYHQ-GGKAVDPGQRTKAVILHVDTQKS 901

Query: 808  LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 867
             V +SL+   +        NR+ ++ K+  E            A++E +++ + + SL E
Sbjct: 902  EVHVSLRQELV--------NRKVKQLKKDTEH----------RAVIEHLEKTFAIASLVE 943

Query: 868  YNHSIGYASVSDYN-TQKFPQKQFLNGQSV-----------IATVMALPSSSTAGRLLLL 915
                I +   S  N T +F  ++   GQ V           I   +A+  SS   R   L
Sbjct: 944  TGQLIAFPVASHLNDTFRFDSEKLQVGQGVSVIIKSTKPCDIGLFLAV-ESSVKKRTPAL 1002

Query: 916  LKAISETETSSS---KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 972
                 E+            +K +  +G +V   +  IK   + +    G  G IH +++ 
Sbjct: 1003 PSVAPESAGQDPGVVSELLEKPTLPIGEMVTGTVKSIKATHVIVTLENGLTGYIHASQIL 1062

Query: 973  DDKSNVVENLFSNFKIGQTVTARIIAKS----------NKPDMKKSFLWELSIKPSML 1020
            DD S+      +  K+G  VTAR+I +           + P   ++ + ELSI+PS L
Sbjct: 1063 DDVSHGTHPT-TTLKVGNPVTARVIGQRTWLTHKSLPISHPSSTQT-VSELSIRPSEL 1118



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            +  D+ P  IV+G V  + S G  + ++ ++   V   +L+D  + +P+K++ +   V  
Sbjct: 446  RYHDIQPGQIVKGKVFTLRSYGMIVKVTEQIKGLVPTLHLADVQIRNPQKKYRVQDEVKC 505

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI---GQIKRVESYGLFITI 1363
            RVL  +P +K++ +TLK    +T  +S +  L+N       +   G I  ++  G  +  
Sbjct: 506  RVLMCDPENKKLLMTLK----KTLVESSLPALTNYKEAKPDLQTHGFISSIKDCGCIVKF 561

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             N ++ GL    EL    +   E ++  G+ VKV +LK + E+ R+ L  + S
Sbjct: 562  YN-DVRGLVPQRELGAQPISAPEEVFYVGQVVKVTVLKSEPEQERMLLSFRLS 613



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 110/254 (43%), Gaps = 32/254 (12%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            I  G IV G++  + S   G++V++   + G V    L ++ + +P   Y          
Sbjct: 450  IQPGQIVKGKVFTLRSY--GMIVKVTEQIKGLVPTLHLADVQIRNPQKKY--------RV 499

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
             DE   VKC+VL      +      ++L+ +L              V++    L   ++ 
Sbjct: 500  QDE---VKCRVLMCDPENKKLL---MTLKKTL--------------VESSLPALTNYKEA 539

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
             P++   G++ ++   GC +     +   V    L    + +PE+ F +G++V   VL  
Sbjct: 540  KPDLQTHGFISSIKDCGCIVKFYNDVRGLVPQRELGAQPISAPEEVFYVGQVVKVTVLKS 599

Query: 1312 EPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
            EP  +R+ ++ + S D    S ++    + +  G +V  ++K+    GL ++I   ++  
Sbjct: 600  EPEQERMLLSFRLSNDKEMESTAQSQKKAMVKTGQLVDVKVKKKTEKGLEVSILPDDISA 659

Query: 1371 LCHVSELSEDHVDN 1384
            L   + LS D+V N
Sbjct: 660  LLPTTHLS-DNVTN 672



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 146/693 (21%), Positives = 267/693 (38%), Gaps = 101/693 (14%)

Query: 750  GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV-------IQAAILDV 802
            G +++GKV     +G++V   E   + G +    LA   + +          ++  +L  
Sbjct: 453  GQIVKGKVFTLRSYGMIVKVTEQ--IKGLVPTLHLADVQIRNPQKKYRVQDEVKCRVLMC 510

Query: 803  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLV 862
                + + ++LK   ++    A +N         +EA  DL  H  +++I    K+   +
Sbjct: 511  DPENKKLLMTLKKTLVESSLPALTNY--------KEAKPDLQTHGFISSI----KDCGCI 558

Query: 863  LSLPEYNHSIGYASVSDYNTQKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 920
            +    YN   G     +   Q    P++ F  GQ V  TV  L S     R+LL  +  +
Sbjct: 559  VKF--YNDVRGLVPQRELGAQPISAPEEVFYVGQVVKVTV--LKSEPEQERMLLSFRLSN 614

Query: 921  ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGI---GFHGRIHITEVNDDKSN 977
            + E  S+ +++KK+    G LV  ++   K  E  L+  I        +  T ++D+ +N
Sbjct: 615  DKEMESTAQSQKKAMVKTGQLVDVKVK--KKTEKGLEVSILPDDISALLPTTHLSDNVTN 672

Query: 978  VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDV 1036
                L   +     +  +++  S+           L  KP++++  E G    +F E   
Sbjct: 673  --SQLLCYWLQAGDILHKVLCLSHSDGH-----IVLCRKPALISAVESGQDPKVFSE--F 723

Query: 1037 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1096
              G  +TG+V  +      +     L        SA     +      F  G+ V   V 
Sbjct: 724  QPGMLLTGFVKSIKAYGIFVQFPSGLSG--LAPKSALSDKFVTTISDHFVEGQTVVAKVT 781

Query: 1097 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1156
            ++++EK+ + L LR   D   + T   S   +   + E   V   +S   S +   + ++
Sbjct: 782  NVDEEKQRMLLSLR-LSDVSQEDTTASSLTLLSQCLEELQGVRSLMSSRDSVLTQTLAEM 840

Query: 1157 GPHLY-----------GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
             P L            G + F+      +    S Y +G        D GQ  K  +L +
Sbjct: 841  TPGLLVDLVVQDMSSDGSLVFSNGSVPGLVLRASKYHQGG----KAVDPGQRTKAVILHV 896

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
              T +   HV  SLR  L    +     L  D +    H   IE L     +   V+   
Sbjct: 897  D-TQKSEVHV--SLRQEL---VNRKVKQLKKDTE----HRAVIEHLEKTFAIASLVE--- 943

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA-----------GRVLSVEPL 1314
                    + +L A  + S+L+D +    EK   +G+ V+           G  L+VE  
Sbjct: 944  --------TGQLIAFPVASHLNDTFRFDSEK-LQVGQGVSVIIKSTKPCDIGLFLAVESS 994

Query: 1315 SKRVEVTLKTSDSRTASQ-----SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
             K+    L +    +A Q     SE+     L +G++V G +K +++  + +T+EN  L 
Sbjct: 995  VKKRTPALPSVAPESAGQDPGVVSELLEKPTLPIGEMVTGTVKSIKATHVIVTLEN-GLT 1053

Query: 1370 GLCHVSELSED--HVDNIETIYRAGEKVKVKIL 1400
            G  H S++ +D  H  +  T  + G  V  +++
Sbjct: 1054 GYIHASQILDDVSHGTHPTTTLKVGNPVTARVI 1086



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 6/141 (4%)

Query: 1294 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1353
            PEK F  G L   RV+   P+     ++LKTS      ++      ++  G IV G++  
Sbjct: 408  PEK-FKPGNLHRCRVIDFSPMDDLALLSLKTS----IIEAPFLRYHDIQPGQIVKGKVFT 462

Query: 1354 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
            + SYG+ + +    + GL     L++  + N +  YR  ++VK ++L  D E +++ + +
Sbjct: 463  LRSYGMIVKV-TEQIKGLVPTLHLADVQIRNPQKKYRVQDEVKCRVLMCDPENKKLLMTL 521

Query: 1414 KSSYFKNDADNLQMSSEEESD 1434
            K +  ++    L    E + D
Sbjct: 522  KKTLVESSLPALTNYKEAKPD 542


>gi|374109344|gb|AEY98250.1| FAFR566Cp [Ashbya gossypii FDAG1]
          Length = 1715

 Score =  363 bits (933), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 366/1352 (27%), Positives = 635/1352 (46%), Gaps = 199/1352 (14%)

Query: 529  FMMKPTRVSEDDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HL 583
             + KP   S D  + +G+++SG  +  V+ N + + +   G  K  +   H++D    + 
Sbjct: 478  LLAKPYLRSAD--IPVGTILSGCEITAVSGNGIELSLF-DGQFKAFVAPLHISDIRLVYP 534

Query: 584  EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ---LPSDASHIHPNSVV 640
            E    + S +K      ++L +DN+   + ++ K SL+++      L SD   I   +  
Sbjct: 535  ERKFKIGSKVK-----GRVLHVDNKG-RVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEE 588

Query: 641  HGYVCNIIET----GCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYVGQSVRSNILDV 694
             G     +E+    GC V FLG L  F P  +  +   QRA       +GQ+V   +L+ 
Sbjct: 589  DGKTLATVESFKPSGCVVTFLGNLKAFLPNKEISEAFVQRA--QDHLRLGQTVVVKVLEH 646

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVI 753
             ++  ++ ++ K    SS D+         ++K A              +   ++G S++
Sbjct: 647  VAKQSKVIVTRK---VSSEDSE--------KQKAA--------------INDLVVGRSIV 681

Query: 754  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVA 803
            +  V E     VVV   +   + G I    L+ + +E           GS +Q  ++D  
Sbjct: 682  DVTVVEKTKDSVVVELNDVG-LRGVIYVGHLSDSKLEQNRALLKKLRIGSSLQGVVMDKD 740

Query: 804  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKE 858
               R+ ++S K   I   ++A+ +         ++   +  +H  V +I +         
Sbjct: 741  VKTRVFNMSCKKSLI---KDASKDILPLTFVDIKDKDPNTPMHGYVKSISDRGIFVAFTG 797

Query: 859  NYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 918
             ++ L LP Y       +    +   F  K+F   QSV  TV  L +     R LL    
Sbjct: 798  KFVGLVLPSY-------ATESRDVDIF--KKFYLNQSV--TVYLLRTDEENERFLL---T 843

Query: 919  ISETETSSSKR---------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 963
            +S  +TS+ K                 K  S Y VG++ +A +  +K  +L +      H
Sbjct: 844  MSPPQTSNKKEDSNHDVAAVNPVDASVKIISQYSVGTITKARVKSVKKTQLNVVLADNLH 903

Query: 964  GRIHITEVNDDKSNVVENL---FSNFKIGQTVTARII----AKSNK--PDMKKS---FLW 1011
            GR+  +E+ D    + EN     + FK G  +  ++I    +K++K  P   ++    + 
Sbjct: 904  GRVDASEIYDTFEEI-ENPKEPLAKFKSGDVIDVKVIGFHDSKTHKFLPISHRTGVNTVL 962

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            ELS K S L     G+    E   +  G  + G+V      +  LT+S  LKA++   + 
Sbjct: 963  ELSAKKSALK----GAYQPIEFSGMKNGDELIGFVNNFAKGFIWLTLSPALKAKIPDFEL 1018

Query: 1072 AYEPSELQ-EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1130
            + + S         F +G A+   V  ++   K++ +  R           DI +     
Sbjct: 1019 SDDGSVFTGNLDESFPLGCALKVKVKELDPAHKIVSVSARKHA------ITDIKD----- 1067

Query: 1131 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
             I   D +  RI K+      L++ +G  L G V F       V+D L   +E      S
Sbjct: 1068 -IKVADKLPARIVKVADSY--LLLDLGNRLTG-VAF-------VTDAL---NEFSLSLRS 1113

Query: 1191 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
             Y++  G  +   V+ +    +    + LSLR+                 D   +++   
Sbjct: 1114 VYEDKIGSMILASVVGVDVENK---KINLSLRTE----------------DATDRYISSH 1154

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            +DL    +V+G++K+VT KG F+ LSR L A V +S L+D Y++  +K +   + + G+V
Sbjct: 1155 KDLKQGDVVRGFIKSVTDKGIFVYLSRTLQAFVPVSKLTDAYIKEWKKFYKTMQPITGKV 1214

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-N 1367
            ++ E  S R+ +T+K S+        + + ++L  GDI  G +K V  +G+F+ + NT N
Sbjct: 1215 VNCESDS-RILLTMKESEV-NGELKILKSYADLKSGDIFDGSVKNVTDFGVFVKLHNTLN 1272

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GL H SE+S+  +D++  ++  G+KVK  ILK + EK ++SLG+K+SYF+   D+   
Sbjct: 1273 VTGLAHKSEISDSKIDDLSLLFGEGDKVKAIILKTNPEKNQVSLGLKASYFQKAHDD--- 1329

Query: 1428 SSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNL 1487
              E E  E+IEE      +    +   A++D++ E             + A  P  E + 
Sbjct: 1330 EDEAEPAESIEEANGEEINGEASDEDEAMEDIEYE------------HTPADAPSHETSS 1377

Query: 1488 DDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK----------KKEKEEREQEIRAAEER 1537
               +  +  G+S + G    A  +D+  NR              K+ ++ ++   A  +R
Sbjct: 1378 KAHKEAVPTGLSLSAGFDWTASILDQ--NREDNEESSEDEDFTSKKAKKNKKRHAAVIDR 1435

Query: 1538 LLEKD--APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1595
             ++ +  AP +  +FERL+  +PNSS +W+ YMAF L +++VEKAR +AERAL+TI+ RE
Sbjct: 1436 TVDINTKAPESVGDFERLIMGNPNSSVIWMNYMAFQLQLSEVEKARELAERALKTISFRE 1495

Query: 1596 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1655
            E+EKLNIW+A  NLEN +G   +E +  VF+RA QY D   +H+ L+ +Y  + ++  A 
Sbjct: 1496 EHEKLNIWIAMLNLENTFGT--DETLEDVFRRACQYMDAYTIHMKLISIYAMSSKDDKAV 1553

Query: 1656 ELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAIL 1713
            EL     KKF   +  +W+   + LL  +Q +  +AV+ +AL SLPR  HI  + + A L
Sbjct: 1554 ELYKAAAKKFGSENVSLWVSWGEFLLTHEQPDEARAVLAQALKSLPRRSHIDVVRKFAQL 1613

Query: 1714 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1773
            EF  G  ++GR++FEG+L++ PKR D+W++YLDQEI+  +      LFER +   L  K+
Sbjct: 1614 EFAKGDPEQGRALFEGLLADAPKRIDIWNVYLDQEIKSSNRARADALFERVLVAKLSRKQ 1673

Query: 1774 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
             KF F K+L+  +S  ++  +EY+K +A +YV
Sbjct: 1674 AKFFFNKWLQLAESTDDQRGVEYIKARAADYV 1705



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 267/1191 (22%), Positives = 504/1191 (42%), Gaps = 163/1191 (13%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI------LDNEIEANEDNL 57
            + +++G  L G +  VN  DL I L  GLRG     +   P       LD  +++  ++ 
Sbjct: 108  KGLTSGTVLLGQLCGVNRTDLCIALTDGLRGYVPLTNISAPFTSLLEQLDQSMDSGSEDE 167

Query: 58   -----------------LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLS 94
                             LP +   F +GQ + C+V++   LD  KK+    +I LS+  S
Sbjct: 168  DEDSDDEQRDKPHTITELPELSKYFTLGQWLRCVVVKNSALDSQKKK--NSRIELSIEPS 225

Query: 95   LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-L 153
             +      E + +   +   VKSIEDHG +L  G+   TGF+   +L++    DV PG +
Sbjct: 226  KV-NLFETEDLAKHTTVQCAVKSIEDHGALLDLGVQDVTGFISNKDLSKMG--DVMPGSV 282

Query: 154  LLQGVVRSIDRTRKVVY-LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 212
             L  + +  DRT  V +  ++    VS+         S+D ++PG  +    + I  +G+
Sbjct: 283  FLANITKRGDRTATVNFEFTAKNSKVSQIS-------SVDAVIPGHTIDFLCEKITNHGI 335

Query: 213  MLSFLTYFTGTVDIFHLQN---TFPTTNWKNDYNQHKKVNARILFVDPTSRAVG------ 263
            +        G +D F  ++    F  T+ K+ Y     +  RI+    T +         
Sbjct: 336  IGKAF----GVLDGFLSESQARVFSVTDMKHKYAIGSNIKVRIIATLRTKQGNKVILVSA 391

Query: 264  ----LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD 319
                L+L   LL   A  +   VG ++D  K++  D              S   YV++SD
Sbjct: 392  LPHILSLERNLLETEAMHA-FPVGYVFDNCKLLGRD--------------SQYLYVSLSD 436

Query: 320  --VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV 377
              + +  + K      +   V+ R+ G+  ++G                  +D+  G ++
Sbjct: 437  ERIGQIHISKAGDAITQ-EAVKARVTGYNTVDGYYQLTSDPKLLAKPYLRSADIPVGTIL 495

Query: 378  KG-KVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK- 434
             G ++ AV   G  +  F G  KA     H+S+  +V P +KFK+G+++  RVL V +K 
Sbjct: 496  SGCEITAVSGNGIELSLFDGQFKAFVAPLHISDIRLVYPERKFKIGSKVKGRVLHVDNKG 555

Query: 435  RITVTHKKTLVK---SKLAILSSYAE----ATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
            R+ VT KK+LV    S + ++S + +    A +   T   +   +  GC V F   ++ F
Sbjct: 556  RVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEEDGKTLATVESFKPSGCVVTFLGNLKAF 615

Query: 488  APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 547
             P  E+             +GQ V  +++  +    ++ ++  +  +  SE     +  L
Sbjct: 616  LPNKEISEAFVQRAQDHLRLGQTVVVKVLEHVAKQSKVIVTRKVS-SEDSEKQKAAINDL 674

Query: 548  VSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 600
            V G  +VDV     T ++VVV +   G  +G I   HL+D  LE    +   ++ G    
Sbjct: 675  VVGRSIVDVTVVEKTKDSVVVELNDVGL-RGVIYVGHLSDSKLEQNRALLKKLRIGSSL- 732

Query: 601  QLLVLDNESSNLL--LSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCF 653
            Q +V+D +    +  +S K SLI  A +  LP    D     PN+ +HGYV +I + G F
Sbjct: 733  QGVVMDKDVKTRVFNMSCKKSLIKDASKDILPLTFVDIKDKDPNTPMHGYVKSISDRGIF 792

Query: 654  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR--ITLSLKQSCCS 711
            V F G+  G    S A + +  D+ K +Y+ QSV   +L  + E  R  +T+S  Q+   
Sbjct: 793  VAFTGKFVGLVLPSYATESRDVDIFKKFYLNQSVTVYLLRTDEENERFLLTMSPPQTSNK 852

Query: 712  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSF 769
              D++           +A +       + +K +  + +G++ + +V   +     VV++ 
Sbjct: 853  KEDSN---------HDVAAVNPVD---ASVKIISQYSVGTITKARVKSVKKTQLNVVLAD 900

Query: 770  EEHS--------DVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFID 819
              H         D +  I + +   A  +SG VI   ++    +K  + + +S +T  ++
Sbjct: 901  NLHGRVDASEIYDTFEEIENPKEPLAKFKSGDVIDVKVIGFHDSKTHKFLPISHRT-GVN 959

Query: 820  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 879
               E ++ + A K           G +Q +     +   + L+  +  +     + ++S 
Sbjct: 960  TVLELSAKKSALK-----------GAYQPIE-FSGMKNGDELIGFVNNFAKGFIWLTLSP 1007

Query: 880  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 939
                K P  +  +  SV    +   S      L + +K +       S  A+K +  D+ 
Sbjct: 1008 ALKAKIPDFELSDDGSVFTGNLD-ESFPLGCALKVKVKELDPAHKIVSVSARKHAITDIK 1066

Query: 940  SL-----VQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTA 994
             +     + A I ++    L L  G    G   +T+  ++ S  + +++ + KIG  + A
Sbjct: 1067 DIKVADKLPARIVKVADSYLLLDLGNRLTGVAFVTDALNEFSLSLRSVYED-KIGSMILA 1125

Query: 995  RIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1054
             ++      D++   +  LS++    T   I S    ++ DV     V G++  V ++  
Sbjct: 1126 SVVG----VDVENKKI-NLSLRTEDATDRYISSHKDLKQGDV-----VRGFIKSVTDKGI 1175

Query: 1055 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1105
             + +SR L+A  F+  S    + ++E+++ +   + +TG V++   + ++L
Sbjct: 1176 FVYLSRTLQA--FVPVSKLTDAYIKEWKKFYKTMQPITGKVVNCESDSRIL 1224


>gi|406602958|emb|CCH45514.1| rRNA biogenesis protein [Wickerhamomyces ciferrii]
          Length = 1724

 Score =  363 bits (932), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 386/1506 (25%), Positives = 690/1506 (45%), Gaps = 195/1506 (12%)

Query: 373  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 432
            PG  ++  +  V   G   +  G V +   L H+  +   +   K+ +G+ +  RV+ V 
Sbjct: 338  PGNYIETLITEVHQDGLATKTYGLVDSSINLTHLGTYSAEEIKHKYAIGSNIKARVIAV- 396

Query: 433  SKRITVTHKKTLVKSKLAILSSYAEAT----------DRLITHGWITKIEKHG-----CF 477
               I     K LV S L  + +  E            D          +E  G      +
Sbjct: 397  ---ILSNGAKKLVLSVLPHVLNLNETNYDTEVSSAPLDAFPLGHIFESVEVKGYDSNYIY 453

Query: 478  VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 537
            V+      G A  S      G   S  Y +G   K R++     S+  N   +    +V 
Sbjct: 454  VKIGGDRYGQAHTSRADTTAGL--SITYTIGSQHKARVLG---FSQLDNSYVLTMDPKVI 508

Query: 538  EDDLVK-----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 592
            E   +K     LG  V+G V  V+ +++ + +  +   +  +P  H++D          +
Sbjct: 509  EQKYLKAQDLPLGEKVNGEVISVSEDSMKIKIFKQ--FEAVVPAAHMSD--------VKL 558

Query: 593  IKPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGY 643
            I P  +F        +++ +   +S + ++ K SL+     +    DA      SV    
Sbjct: 559  IYPERKFKIGSKVRGRIINISKYTSEITVTLKKSLVGIENVITKIDDAKVGERTSVT--- 615

Query: 644  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703
            V +   +G  V F G L  F P+S+  +           +GQ++   I  VN ET RI++
Sbjct: 616  VTSFRPSGALVSFFGNLKAFLPKSEISETFVKKPEDHLRLGQTITVRIASVNKETHRISV 675

Query: 704  SLKQSCCSSTDASFMQEHFLLEE---KIAMLQSSKHN------GSELKWVEGFIIGSVIE 754
            S + S  ++ +     E  ++     K+ +++ SK +      G+ L+       G + E
Sbjct: 676  SCRLSEETTEEQQQALEQLVVGRSILKVEIVEKSKESVIVEIPGNNLR-------GVIFE 728

Query: 755  GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
            G + + N       FE++  +             +E GS I+  +LD     RL +L+ K
Sbjct: 729  GHLSDGN-------FEQNRAIL----------KRLEVGSSIEGLVLDKDSRSRLFNLTAK 771

Query: 815  TVFIDRFREANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEYNHSIG 873
               I           AQ+ K   + S D+ +  Q +   V+ V    + ++       + 
Sbjct: 772  KSLI---------TAAQEDKLPVKFS-DISISEQLIPGYVKSVTNKGIFVAFGAKLVGLI 821

Query: 874  YASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS------ 927
             A  +           F   QSV  +V  + +     R LL LK   E +T+S       
Sbjct: 822  LAKYATSRPVDDLSSVFHVNQSV--SVRVIRTDEEHNRFLLSLK---EKKTTSDDIVNPV 876

Query: 928  -KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFS 984
             +  K    +  G L +A I  +K  +L ++      GR+ ++++ +  D+    +   +
Sbjct: 877  DQTIKSAKEFVPGKLTKALIKSVKQSQLNVQLADNIQGRVDVSQIYETYDEIKNPKVPLA 936

Query: 985  NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1035
             FK G  +  ++I   +  + +         K  L ELS K S LT     + L F++  
Sbjct: 937  PFKKGDIIDVKVIGFHDARNHRFLPISHRRSKQILIELSAKKSDLTEGTTEA-LSFDK-- 993

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            +++G     ++      +  L +S  +K ++  +D   + S L++    + IG A+   V
Sbjct: 994  LTVGTEWVAFINNATVGFFFLNLSPSIKGRISFMDLPGDASALKDLDGNYPIGSALKVKV 1053

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1155
             +++ E   + L  R  QD IS  T++         +  G +V  RI +I      ++V+
Sbjct: 1054 KAVDAENHNVLLTGR--QDSIS--TIED--------VKVGAVVPSRILRITESF--VIVE 1099

Query: 1156 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1215
            +  ++      T        D L  Y +   D    +++ + +  K+L +    +    +
Sbjct: 1100 LAENVTAMSFIT--------DALDDYSKKLEDV---FEKNEILPAKILSVDEHNK---KL 1145

Query: 1216 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1275
             +SLRS+                D   K + K +DL    +V G+VKN++ KG FI L R
Sbjct: 1146 NVSLRSN----------------DAKDKLISKSDDLKRGDVVHGFVKNISDKGLFISLGR 1189

Query: 1276 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1335
             +   V +S++SD ++++ +K +   + V G++++ +     V +TLK S+       E+
Sbjct: 1190 TVTGYVKVSDVSDSFIKAWKKYYKPHQQVIGKIINADT-EGNVTLTLKESEV----NGEL 1244

Query: 1336 NNLSNLH---VGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRA 1391
            N L       +GDI  G ++RV  +G+F+ ++ T N+ GLCH S+++++ V ++E ++  
Sbjct: 1245 NILKRFEDIVIGDIFEGSVRRVTDFGVFVKLDGTLNISGLCHHSQIADNDVTDLEALFGE 1304

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYF-KNDADNLQMSSEEESDEAIEEVGSYNRSSLLE 1450
            G++VKVK+L VD  K+++SLGMK+SYF +N  ++  +  E+ S+E +EE      +    
Sbjct: 1305 GDRVKVKVLAVDTGKKQLSLGMKASYFIENADEDEDVDMEDASEENVEEDSDSEEAD--- 1361

Query: 1451 NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKT 1510
                  QD + E+E+   +  A  E  +     E   + ++     G++ N G    A  
Sbjct: 1362 ----DKQDSEDEAEEDAIVEDAFNEQDSEESSDEEEEESKEDKSITGLTTN-GFDWTASI 1416

Query: 1511 IDEKNNRHAKKKE--------KEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSF 1562
            +D+ ++  +  +E        K+ + +E+       L+  AP++  +FERL+  +PNSS 
Sbjct: 1417 LDQVHDDESSDEEDFTDSKSKKKRKTKEVVEDTTGDLQSKAPQSVSDFERLIIGNPNSSI 1476

Query: 1563 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1622
            VW+ YM+F L ++++EKAR IAERAL+TIN REE EKLNIW+A  NLEN +G   +E + 
Sbjct: 1477 VWMNYMSFQLQLSEIEKAREIAERALKTINYREEQEKLNIWIALLNLENTFGT--KETLE 1534

Query: 1623 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLK 1681
              F+R+ +Y D   +H  L+ +Y  +E+   A+ L   + KKF K S  VW+     LL 
Sbjct: 1535 DAFKRSTEYMDSLVMHQKLVSIYILSEKFSKAESLFKVITKKFGKESVSVWVSYGSYLLD 1594

Query: 1682 QQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1740
            Q Q +    V+  +L SLP+  HI+ + + A LEF  G A++GR++FEG++++ PKR DL
Sbjct: 1595 QNQSDKAHEVLASSLNSLPKRDHIEVVRKFAQLEFTKGDAEQGRTLFEGLIADVPKRIDL 1654

Query: 1741 WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1800
            W++Y+DQEI+  +   +  LFER +S  +  K+ KF F K+L + +  G+ +  +YVK K
Sbjct: 1655 WNVYIDQEIKKNENKKVSDLFERVLSRKVSRKQAKFFFGKWLSFAEKQGDTKTADYVKAK 1714

Query: 1801 AMEYVE 1806
            A EYV+
Sbjct: 1715 AQEYVQ 1720



 Score =  170 bits (431), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 184/694 (26%), Positives = 309/694 (44%), Gaps = 48/694 (6%)

Query: 51  EANEDNLLPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGM 109
           E+ E   L   F +GQ +  +V++     KK+  K++I LS+ +    K L  + +  G 
Sbjct: 196 ESKEFPQLSKFFKIGQWLRAVVVESTQKGKKKQNKKRIQLSVEIETTNKDLEDDDLVAGT 255

Query: 110 VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPG-LLLQGVVRSIDRT 165
            L   VKS+EDHG IL  G     GF+    L +N+  D   + PG + L  VV    RT
Sbjct: 256 TLQVSVKSVEDHGLILDTGREGLGGFISNKEL-KNANYDSTAIVPGTVFLSTVVNKNART 314

Query: 166 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
             V   +   + V+          SID +VPG  + T +  + ++G+          +++
Sbjct: 315 VTVKLNTGKKNPVTTTS-------SIDSIVPGNYIETLITEVHQDGLATKTYGLVDSSIN 367

Query: 226 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--PYLLH----------N 273
           + HL  T+     K+ Y     + AR++ V  ++ A  L L+  P++L+          +
Sbjct: 368 LTHL-GTYSAEEIKHKYAIGSNIKARVIAVILSNGAKKLVLSVLPHVLNLNETNYDTEVS 426

Query: 274 RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 333
            AP     +G I++  +V   D     +       +    Y        +    L   Y 
Sbjct: 427 SAPLDAFPLGHIFESVEVKGYDSNYIYV------KIGGDRYGQAHTSRADTTAGLSITYT 480

Query: 334 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 393
            GS  + R+LGF  L+      +     E       D+  G  V G+VI+V      ++ 
Sbjct: 481 IGSQHKARVLGFSQLDNSYVLTMDPKVIEQKYLKAQDLPLGEKVNGEVISVSEDSMKIKI 540

Query: 394 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAI 451
               +A+ P  HMS+ +++ P +KFK+G+++  R++ +   +  ITVT KK+LV  +  +
Sbjct: 541 FKQFEAVVPAAHMSDVKLIYPERKFKIGSKVRGRIINISKYTSEITVTLKKSLVGIE-NV 599

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
           ++   +A     T   +T     G  V F+  ++ F P+SE+      +P     +GQ +
Sbjct: 600 ITKIDDAKVGERTSVTVTSFRPSGALVSFFGNLKAFLPKSEISETFVKKPEDHLRLGQTI 659

Query: 512 KCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG----VVDVVTPNAVVVYVIAK 567
             RI S    + RI++S  +     +E+    L  LV G     V++V  +   V V   
Sbjct: 660 TVRIASVNKETHRISVSCRLSE-ETTEEQQQALEQLVVGRSILKVEIVEKSKESVIVEIP 718

Query: 568 GYS-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINS 623
           G + +G I   HL+D + E    +   ++ G   +  LVLD +S + L  L+AK SLI +
Sbjct: 719 GNNLRGVIFEGHLSDGNFEQNRAILKRLEVGSSIEG-LVLDKDSRSRLFNLTAKKSLITA 777

Query: 624 AQQ--LPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 680
           AQ+  LP   S I     ++ GYV ++   G FV F  +L G      A      DLS  
Sbjct: 778 AQEDKLPVKFSDISISEQLIPGYVKSVTNKGIFVAFGAKLVGLILAKYATSRPVDDLSSV 837

Query: 681 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
           ++V QSV   ++  + E  R  LSLK+   +S D
Sbjct: 838 FHVNQSVSVRVIRTDEEHNRFLLSLKEKKTTSDD 871



 Score = 45.8 bits (107), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 121/304 (39%), Gaps = 50/304 (16%)

Query: 152  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMV----STRVQSI 207
            G  L+  V+++D     V L+   D++S      ++ + +  +VP  ++    S  +  +
Sbjct: 1046 GSALKVKVKAVDAENHNVLLTGRQDSIST-----IEDVKVGAVVPSRILRITESFVIVEL 1100

Query: 208  LENGVMLSFLT-----YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAV 262
             EN   +SF+T     Y     D+F      P               A+IL VD  ++  
Sbjct: 1101 AENVTAMSFITDALDDYSKKLEDVFEKNEILP---------------AKILSVDEHNKK- 1144

Query: 263  GLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVT 316
               LN  L  N A    +   D   +  VV        D+GL + L    T      YV 
Sbjct: 1145 ---LNVSLRSNDAKDKLISKSDDLKRGDVVHGFVKNISDKGLFISLGRTVT-----GYVK 1196

Query: 317  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKP 373
            +SDV++  ++  +K YK    V  +I+     EG  T  LK S   G   ++    D+  
Sbjct: 1197 VSDVSDSFIKAWKKYYKPHQQVIGKIIN-ADTEGNVTLTLKESEVNGELNILKRFEDIVI 1255

Query: 374  GMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
            G + +G V  V  FG  V+  G   +  LC    +++ ++      F  G  +  +VL V
Sbjct: 1256 GDIFEGSVRRVTDFGVFVKLDGTLNISGLCHHSQIADNDVTDLEALFGEGDRVKVKVLAV 1315

Query: 432  KSKR 435
             + +
Sbjct: 1316 DTGK 1319


>gi|167516896|ref|XP_001742789.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779413|gb|EDQ93027.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1691

 Score =  363 bits (931), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 375/1523 (24%), Positives = 683/1523 (44%), Gaps = 216/1523 (14%)

Query: 61   IFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLRLS-LLYKGLSLETVQ---------- 106
            +FHVGQ + C V +  +DK+ +     R I  +L +  +L K    +T Q          
Sbjct: 169  LFHVGQQLVCAV-KAKEDKRLLLTTDPRLIHANLDVDDILQKAHRSQTPQLLSLTLMDSR 227

Query: 107  ---------EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL---AENSGIDVKPGLL 154
                     +G +L A V+S+EDHGY++  G+    GFLP        +  G ++ PG  
Sbjct: 228  HWSPPCAHCQGRLLPACVQSVEDHGYVVDLGIDGAQGFLPTKAAKLHVKQLGRNLVPGEP 287

Query: 155  LQGVVR-SIDRTRKVVYLSSDPDTVSKCVTKDLKG--ISIDLLVPGMMVSTRVQSILENG 211
            L  V   +   + +VV +S +   +SK  T +L      +  L PG+ V  +VQ +   G
Sbjct: 288  LFCVTTGTTAGSTRVVQVSIN---ISKLRTAELSTNEAVMSTLRPGLQVRGKVQQVHAKG 344

Query: 212  VMLSFLTYFTGTVDIFHLQ-NTFPTTNWKND--YNQHKKVNARILFVDPTSRAVGLTLN- 267
            ++L    +  G   I H+  +  PT     +  Y   + + AR++F+D  ++ +  +L  
Sbjct: 345  LVLQSGGFSIG---IHHVHFDQLPTEKKTTEQLYTVGQTLTARVIFIDLANKVILASLRQ 401

Query: 268  ----------PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL---DIPSTPVSTPA- 313
                      P  +  R P  HV+            VD+  G+L      P      PA 
Sbjct: 402  PHLQIDDCTLPLPIGTRLPSCHVRF-----------VDQAFGVLAAGQPAPGHARGVPAE 450

Query: 314  --------YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 365
                    +  IS + EE V  + K ++ G+    R++  +  +G+ +        +   
Sbjct: 451  EDTPEVLGFAHISRLLEEHVETVPKSFRRGTAHEGRVVAQQPFDGIYSFSFAPKDLKVPF 510

Query: 366  FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
                 ++ G++V+G V+++   G +++   G++A  P  H+++  +  P KKFK G ++ 
Sbjct: 511  LAAESIEVGLLVQGSVLSLIPSGMVIELASGIQARVPSEHLADVMLTHPEKKFKAGDKVK 570

Query: 426  FRVL------GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 479
             RVL      G K  RI VT KKTLV+S L I+ +  +A   + THG I+K+   GC V 
Sbjct: 571  GRVLSNEKLKGSK-HRIKVTLKKTLVRSDLPIIKNMHDAQPGMRTHGCISKVMDKGCIVS 629

Query: 480  FYNGVQGFAP-----RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
            FYN  +  +       + +  + GC+         VV+C +++  P    + L+F    T
Sbjct: 630  FYNQARRLSALPLFQNNAILANRGCK-------FMVVECGVLNCDPQENSLILTFRAAKT 682

Query: 535  RVSEDDL-------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 587
             V++          ++ GSL +  V  V  + + V  +     +  +   HL DH   AT
Sbjct: 683  SVADRGARDAQLKRIEAGSLEAVEVVAVAEDMLTVKFVESPLVQTELRAGHLTDHPSLAT 742

Query: 588  VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL--INSAQQLPSDASHIHPNSVVHGYVC 645
             +    K G + + + VL+     + +S K  L      + LP +   +    V   Y+ 
Sbjct: 743  ALCRTYKKGDKLEAV-VLEKRGRRVTISCKPQLKAQTKVESLPKELDDLKLGQVFPAYIR 801

Query: 646  NIIETGCFVRFLGRLTGFAP----RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 701
            ++++ GCF+  +  L+G  P      + VD  +A     ++  Q+V   + ++N E  R 
Sbjct: 802  SVLDYGCFIGTIHGLSGLVPLRQLAKRYVDNPKA----FFHPDQTVLVAVSEINKEQNRA 857

Query: 702  TLSLKQSCCSSTDA-SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 760
              S+K+    +     +MQ    L + +A     K   S  +    +  G  I   + E 
Sbjct: 858  VFSMKEDVIGAVAVVPYMQS---LAKDMARFAGIKD--SPGRRAAPYHHGQAISVLIQEI 912

Query: 761  NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 820
              FGVV + ++   +  F+T  Q  G   E G  +   +LD+   + ++D++LK   +  
Sbjct: 913  KPFGVVGTTKDGVPI--FVTKEQRQGIECEVGVELPGRVLDIDYEKGVLDVTLKPELVSA 970

Query: 821  FREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDY 880
              +   + +  K KR           + V   VE+VK  + V+S PE   ++ Y     Y
Sbjct: 971  SSDNGKDSKTGKGKRSHPTKLPFAKKEEVQGRVELVKVTHAVVSGPE--RTLLYCPTQTY 1028

Query: 881  NTQKFPQKQFLNGQSVIATVMALPS------------SSTAGRLLLLLKAI--------- 919
            N ++ P K+F+ G     TV+++ +            +S   +L LL   +         
Sbjct: 1029 NDRREPFKRFVAGSKATVTVLSVGNPEFVVGQATVQWASQRSQLALLPLYLHFCMLIVRD 1088

Query: 920  ------SETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 973
                   E+E ++S+ A       VG +V+AE+T+    +L+L+      GR+  TEV D
Sbjct: 1089 CFYGWKQESEPTTSELA-------VGQVVEAEVTKAGQTQLQLRLPEKRSGRVLATEVLD 1141

Query: 974  DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSE 1024
            +     +  F  +  G  +  RI+   ++   +         K  + E S+KPS+L   E
Sbjct: 1142 ENDTSAQP-FKAYHKGDKIQVRILGFRDQKTRRFMPITQKFLKRHVAECSLKPSVLAAKE 1200

Query: 1025 IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR 1084
            +    + E   V +GQ   G V +V      + ++ +++ ++ +++     ++ +  +++
Sbjct: 1201 LPP--MLEREAVEVGQERWGVVSEVGERCLWVLLAPNVRGRINLVNLGAAATDPKALKKQ 1258

Query: 1085 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1144
            F IG      ++ +++  KLL L              ++++++ Q  IH G +V   + +
Sbjct: 1259 FGIGMRHKFRIIIMSE--KLLEL--------------ELASESSQE-IHVGSVVSASLKR 1301

Query: 1145 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1204
            I++  G  ++ +G   +G V  T++ +   ++P    D  +      Y         +  
Sbjct: 1302 IVNRFG--IMHLGHGRFGAVDITDVDDKLHAEPFKTLDRSKV-----YRAVVIGGENLAA 1354

Query: 1205 ISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
                      + LSLR S ++G ++T +S L            ++ED+  + + +G V N
Sbjct: 1355 TGNMGSAIGDIRLSLRPSEVEGDAATKASVL------------RMEDVDTDQVHRGVVCN 1402

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
             T +G F+ LSR + A+V ++NLSD +V   +K F +G LV GR+++      R+E++LK
Sbjct: 1403 ATDEGVFVALSRNVTARVQIANLSDLFVRDIKKAFKVGTLVQGRIMA--KTDGRLEMSLK 1460

Query: 1324 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHV 1382
             SD    S + +  +  L  G  V G IKRVESYG+FI I+++ NL G+ H+SE ++  +
Sbjct: 1461 KSDV-DPSGTTLLRIDTLEQGQHVTGVIKRVESYGVFIVIDDSANLTGMAHISECADQRI 1519

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVG- 1441
            +++  +Y AG+ VK  +LKVD +K+RISLG+K SYF  D   L  + +E +DEA    G 
Sbjct: 1520 EDLNKLYSAGDAVKAVVLKVDVDKKRISLGIKPSYF--DDAGLPQAMDESADEASAADGD 1577

Query: 1442 ------SYNRSSLLENSSVAVQD 1458
                    +   +L+  +VA+Q+
Sbjct: 1578 ASGDESDADADDVLDTDAVALQE 1600


>gi|403417509|emb|CCM04209.1| predicted protein [Fibroporia radiculosa]
          Length = 1465

 Score =  362 bits (929), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 336/1241 (27%), Positives = 593/1241 (47%), Gaps = 149/1241 (12%)

Query: 619  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 678
            SL+ ++    ++AS I P + V   V  ++  G  ++ +G   G   +   + G      
Sbjct: 323  SLMTASLSEVTNASSILPGTQVQSLVTAVLPDGLNLQIMGYFGGTIDQFHLLPGHP---E 379

Query: 679  KTYYVGQSVRSNIL-DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
            + Y +GQ +++ +L  + +   +  LSL                 + ++   M     HN
Sbjct: 380  RNYKMGQKLKARVLYAITATPPKFALSLASHVLK----------LVPKDTAGMDDGLNHN 429

Query: 738  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES------ 791
              E+ +  G I+ +V   +V   ++ G+VV  E  S V GF+     +   V +      
Sbjct: 430  LDEI-YPTGSILDAVKVIRVE--SERGLVV--EVASGVEGFVHISHTSDEHVPTLSSSSG 484

Query: 792  ----GSVIQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQ----KKKRKREASKD 842
                G+V +A +      + L+ LSL+ +V   +F +    +  +      KR  +++  
Sbjct: 485  PWKVGTVHRARVTGHFHFDGLLQLSLRPSVLEQKFLQVGEVQVGEVLKGAVKRLTDSAMF 544

Query: 843  LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 902
            + +  +V+ ++            P  NH   YA +      K PQ++F  G S+   V+ 
Sbjct: 545  VSISGSVDGVI-----------WP--NH---YADIQ----LKQPQRRFKPGGSIKCRVLV 584

Query: 903  LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 962
            + +     R  ++L A      S+     K     VG +  A +       L+++F    
Sbjct: 585  VDTQ----RQRIVLTAKKTLLESALPIISKFEDARVGLVTHAVVFRASDKSLQVEF---- 636

Query: 963  HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML-T 1021
            +  +       + S     L + F IG+ V  RI+  S  P+  +         P+ L +
Sbjct: 637  YNNVKAVVPAGEASETAVGLSTAFPIGKPVQVRIM--SIDPETSRIVASIRQTAPNYLAS 694

Query: 1022 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1081
            +  I S        + IG  V G + +V NE A++T+       +  L++      +   
Sbjct: 695  IENIAS--------IGIGDTVEGDITEVQNEKAIVTLRPSQVRTVISLNNLANRRGVSVA 746

Query: 1082 QRR--FHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1138
            Q R    +G+ +   V+ S N E+  +R+  +P +     + + +    +Q     G IV
Sbjct: 747  QLRASLQVGEKLQDLVVVSRNPERGFVRIATKPKEKITLAQKIPLDLATIQI----GQIV 802

Query: 1139 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1198
             GR+  +  G  G +V++   + G +H T++ +         ++ G+  P + Y     +
Sbjct: 803  QGRV--LHHGRRGALVKLTNTVSGTLHPTDVDD--------DFESGKAFPPADY----IL 848

Query: 1199 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLSPNMI 1256
            K  V+ + +  R     +L+L        ST  S L    D P     +  I DL     
Sbjct: 849  KAVVIAVDKDRR-----QLTL--------STRPSRLQPRRDEPVIDPEIASIGDLKEGET 895

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            ++G++K V   G F+ L R++DA+V +  L D YV+  +  F   +LV GR+L V+   K
Sbjct: 896  IRGFIKQVAEHGIFVTLGREIDARVQIKELFDEYVKDWKSRFVAHQLVRGRILRVDIAKK 955

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
            +VE+T ++ D +T S +    L++L  G  V G IKR E YGLFI IE + L GLCH SE
Sbjct: 956  QVEMTFRSGDLKTNSLT----LADLSEGQKVDGCIKRTEEYGLFIQIEGSKLTGLCHKSE 1011

Query: 1377 LSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEE-- 1431
            LS++   N+      +R G++VK  IL +D+EKRRISLG+K SYF +D  + Q +++   
Sbjct: 1012 LSDNKDANVTLALRSFREGDQVKAIILSIDEEKRRISLGLKPSYFVDD--DFQSNNDVDD 1069

Query: 1432 ---------------ESDEAIEEVGSY--NRSSLLENSSVAVQDMDM----ESEDGGSLV 1470
                           E  +  ++  S+  N+  +  +      ++DM    +++   S  
Sbjct: 1070 ENEESSEEDNLLGIVEGSQGDDDSRSHQDNQDDMDADVIDDSMNIDMSIQLDADQSPSDD 1129

Query: 1471 LAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE 1530
                E   SVP L +     Q  + + +  +      ++  D ++++  +K++++E EQ+
Sbjct: 1130 RTDKELHISVPSLNLQ-QGFQWSVASNVEVDDDMQPSSEDEDVEDSQQKRKRKRKEIEQD 1188

Query: 1531 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1590
            + A     +    P +  +FER++  SPNSS++WI+YM+F L +++V+KAR IA+RAL+T
Sbjct: 1189 LTAD----MHTKVPESNTDFERVLLGSPNSSYLWIQYMSFQLQISEVDKAREIAKRALRT 1244

Query: 1591 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1650
            IN REE EK+NIW+A  NLEN YG   EE +   F+ A ++ D + +HL L  + +++ +
Sbjct: 1245 INFREEQEKMNIWIALLNLENTYGT--EETLETTFRDAARHNDSETIHLRLASILDQSGK 1302

Query: 1651 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQ 1709
               A+E   +  KKF  S  VW    +  L+  + E  + ++ R+L SL +H H+K IS+
Sbjct: 1303 TDRAEEQYQRTCKKFGQSSDVWTLCGEHYLRHGKLEEARKLLPRSLQSLEKHDHLKTISK 1362

Query: 1710 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1769
             A LE+K G  +RG+++FEGI+  + KR D+WSIY+D E   GD+  +R +F+R +++ +
Sbjct: 1363 FAQLEYKLGDPERGKTLFEGIVDSHSKRWDMWSIYIDMEAGQGDMMSLRNIFDRVLAIKM 1422

Query: 1770 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
               K K  FKK+LE E+ +G+EE    VK KA+E+ +   A
Sbjct: 1423 TSHKAKSFFKKWLELERRMGDEEGASAVKAKAVEWTQRASA 1463



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 182/722 (25%), Positives = 315/722 (43%), Gaps = 74/722 (10%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE------ 54
           + ++ GMK+ G V  V    L+I LP  L     +   +  L  +L+   E ++      
Sbjct: 114 KRVTVGMKILGQVVSVESLALIISLPNQLFAHVPITEISTQLTALLEEMGEVDDASSSDE 173

Query: 55  --------DNLLPTIF-------HVGQLVSCIVLQLDDDKKEIGK---------RKIWLS 90
                    + +P +F       +V  +VS I L    D   +G+         R+I LS
Sbjct: 174 EEGSGTGASSSIPELFQMFRPGSYVRAIVSAIHLPGATDTTPLGRIRDEAHKASRRIELS 233

Query: 91  LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-- 148
           L    +  G+S   ++ G  ++A VKS EDHGYIL  G+    GFL   +  +    +  
Sbjct: 234 LVPEKVNAGVSKADLRAGFTMSAAVKSKEDHGYILDLGVSDINGFLSFKDAKQGPFENPE 293

Query: 149 -VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 207
            ++ G LL   +       +    S +  ++      ++   S   ++PG  V + V ++
Sbjct: 294 RIRVGHLLDISISKTTANGRTCTCSVNASSLMTASLSEVTNASS--ILPGTQVQSLVTAV 351

Query: 208 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDPTSRAVGLTL 266
           L +G+ L  + YF GT+D FHL    P  N    Y   +K+ AR+L+ +  T     L+L
Sbjct: 352 LPDGLNLQIMGYFGGTIDQFHLLPGHPERN----YKMGQKLKARVLYAITATPPKFALSL 407

Query: 267 NPYLLH-------------NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 313
             ++L              N         G I D  KV+RV+   GL++++ S       
Sbjct: 408 ASHVLKLVPKDTAGMDDGLNHNLDEIYPTGSILDAVKVIRVESERGLVVEVAS---GVEG 464

Query: 314 YVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 370
           +V IS  ++E V  L      +K G+  R R+ G  H +GL    L+ S  E       +
Sbjct: 465 FVHISHTSDEHVPTLSSSSGPWKVGTVHRARVTGHFHFDGLLQLSLRPSVLEQKFLQVGE 524

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           V+ G V+KG V  +      V   G V  +    H ++ ++ +P ++FK G  +  RVL 
Sbjct: 525 VQVGEVLKGAVKRLTDSAMFVSISGSVDGVIWPNHYADIQLKQPQRRFKPGGSIKCRVLV 584

Query: 431 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V +  +RI +T KKTL++S L I+S + +A   L+TH  + +       V FYN V+   
Sbjct: 585 VDTQRQRIVLTAKKTLLESALPIISKFEDARVGLVTHAVVFRASDKSLQVEFYNNVKAVV 644

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK---L 544
           P  E   +     S+ + +G+ V+ RIMS  P + RI  S     P  ++  + +    +
Sbjct: 645 PAGEAS-ETAVGLSTAFPIGKPVQVRIMSIDPETSRIVASIRQTAPNYLASIENIASIGI 703

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLL 603
           G  V G +  V  N   +  +     +  I   +LA+    +   +++ ++ G +   L+
Sbjct: 704 GDTVEGDITEVQ-NEKAIVTLRPSQVRTVISLNNLANRRGVSVAQLRASLQVGEKLQDLV 762

Query: 604 VL--DNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
           V+  + E   + ++ K    I  AQ++P D + I    +V G V +    G  V+    +
Sbjct: 763 VVSRNPERGFVRIATKPKEKITLAQKIPLDLATIQIGQIVQGRVLHHGRRGALVKLTNTV 822

Query: 661 TG 662
           +G
Sbjct: 823 SG 824



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 185/814 (22%), Positives = 322/814 (39%), Gaps = 135/814 (16%)

Query: 352  ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ----FPGGVKALCPLPHMS 407
            A+ ++ AS  E  V   S + PG  V+  V AV   G  +Q    F G +     LP   
Sbjct: 321  ASSLMTASLSE--VTNASSILPGTQVQSLVTAVLPDGLNLQIMGYFGGTIDQFHLLPG-- 376

Query: 408  EFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLIT 464
                  P + +K+G +L  RVL      IT T  K   +L    L ++       D  + 
Sbjct: 377  -----HPERNYKMGQKLKARVLYA----ITATPPKFALSLASHVLKLVPKDTAGMDDGLN 427

Query: 465  HGW--------------ITKIE-KHGCFVRFYNGVQGFAPRSELGLD--PGCEPSS-MYH 506
            H                + ++E + G  V   +GV+GF   S    +  P    SS  + 
Sbjct: 428  HNLDEIYPTGSILDAVKVIRVESERGLVVEVASGVEGFVHISHTSDEHVPTLSSSSGPWK 487

Query: 507  VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVV 562
            VG V + R+         + LS  ++P+ + +  L    V++G ++ G V  +T +A+ V
Sbjct: 488  VGTVHRARVTGHFHFDGLLQLS--LRPSVLEQKFLQVGEVQVGEVLKGAVKRLTDSAMFV 545

Query: 563  YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 620
             +   G   G I   H AD  L+     +   KPG     ++LV+D +   ++L+AK +L
Sbjct: 546  SI--SGSVDGVIWPNHYADIQLKQP---QRRFKPGGSIKCRVLVVDTQRQRIVLTAKKTL 600

Query: 621  INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 680
            + SA  + S         V H  V    +    V F   +    P  +A +     LS  
Sbjct: 601  LESALPIISKFEDARVGLVTHAVVFRASDKSLQVEFYNNVKAVVPAGEASETA-VGLSTA 659

Query: 681  YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 740
            + +G+ V+  I+ ++ ET RI  S++Q+  +         +    E IA +         
Sbjct: 660  FPIGKPVQVRIMSIDPETSRIVASIRQTAPN---------YLASIENIASIG-------- 702

Query: 741  LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL 800
                    IG  +EG + E  +   +V+    S V   I+ + LA     S + ++A++ 
Sbjct: 703  --------IGDTVEGDITEVQNEKAIVTLRP-SQVRTVISLNNLANRRGVSVAQLRASL- 752

Query: 801  DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIV---- 856
                 E+L DL    V + R  E    R A K K K   ++ + +      I +IV    
Sbjct: 753  --QVGEKLQDL----VVVSRNPERGFVRIATKPKEKITLAQKIPLDLATIQIGQIVQGRV 806

Query: 857  ----KENYLVLSLPEYNHSIGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAG 910
                +   LV      + ++    V D   + + FP   ++    + A V+A+       
Sbjct: 807  LHHGRRGALVKLTNTVSGTLHPTDVDDDFESGKAFPPADYI----LKAVVIAVDKDR--- 859

Query: 911  RLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE-----ITEIKPLELRLKFGIGFHGR 965
            R L L    S  +    +         +G L + E     I ++    + +  G     R
Sbjct: 860  RQLTLSTRPSRLQPRRDEPVIDPEIASIGDLKEGETIRGFIKQVAEHGIFVTLGREIDAR 919

Query: 966  IHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEI 1025
            + I E+ D+    V++  S F   Q V  RI+    + D+ K  + E++ +   L  + +
Sbjct: 920  VQIKELFDE---YVKDWKSRFVAHQLVRGRIL----RVDIAKKQV-EMTFRSGDLKTNSL 971

Query: 1026 GSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ--- 1082
                     D+S GQ+V G + + + E+ L      ++ +   L      SEL + +   
Sbjct: 972  TL------ADLSEGQKVDGCIKRTE-EYGLF-----IQIEGSKLTGLCHKSELSDNKDAN 1019

Query: 1083 -----RRFHIGKAVTGHVLSINKEKKLLRLVLRP 1111
                 R F  G  V   +LSI++EK+ + L L+P
Sbjct: 1020 VTLALRSFREGDQVKAIILSIDEEKRRISLGLKP 1053



 Score = 44.3 bits (103), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 121/278 (43%), Gaps = 37/278 (13%)

Query: 84   KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG--------LPSFTGF 135
            K KI L+ ++ L      L T+Q G ++          G +LH G          + +G 
Sbjct: 780  KEKITLAQKIPL-----DLATIQIGQIV---------QGRVLHHGRRGALVKLTNTVSGT 825

Query: 136  LPRNNLAEN--SGIDVKPG-LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK---DLKGI 189
            L   ++ ++  SG    P   +L+ VV ++D+ R+ + LS+ P  +     +   D +  
Sbjct: 826  LHPTDVDDDFESGKAFPPADYILKAVVIAVDKDRRQLTLSTRPSRLQPRRDEPVIDPEIA 885

Query: 190  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 249
            SI  L  G  +   ++ + E+G+ ++        V I  L + +   +WK+ +  H+ V 
Sbjct: 886  SIGDLKEGETIRGFIKQVAEHGIFVTLGREIDARVQIKELFDEY-VKDWKSRFVAHQLVR 944

Query: 250  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKV---VRVDRGLGLLLDIPS 306
             RIL VD   + V +T     L   +    + + D+ +  KV   ++     GL + I  
Sbjct: 945  GRILRVDIAKKQVEMTFRSGDLKTNS----LTLADLSEGQKVDGCIKRTEEYGLFIQIEG 1000

Query: 307  TPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRIL 343
            + ++   + + +SD  +  V    + ++EG  V+  IL
Sbjct: 1001 SKLTGLCHKSELSDNKDANVTLALRSFREGDQVKAIIL 1038


>gi|302308948|ref|NP_986113.2| AFR566Cp [Ashbya gossypii ATCC 10895]
 gi|299790870|gb|AAS53937.2| AFR566Cp [Ashbya gossypii ATCC 10895]
          Length = 1715

 Score =  362 bits (929), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 363/1352 (26%), Positives = 631/1352 (46%), Gaps = 199/1352 (14%)

Query: 529  FMMKPTRVSEDDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HL 583
             + KP   S D  + +G+++SG  +  V+ N + + +   G  K  +   H++D    + 
Sbjct: 478  LLAKPYLRSAD--IPVGTILSGCEITAVSGNGIELSLF-DGQFKAFVAPLHISDIRLVYP 534

Query: 584  EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ---LPSDASHIHPNSVV 640
            E    + S +K      ++L +DN+   + ++ K SL+++      L SD   I   +  
Sbjct: 535  ERKFKIGSKVK-----GRVLHVDNKG-RVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEE 588

Query: 641  HGYVCNIIET----GCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYVGQSVRSNILDV 694
             G     +E+    GC V FLG L  F P  +  +   QRA       +GQ+V   +L+ 
Sbjct: 589  DGKTLATVESFKPSGCVVTFLGNLKAFLPNKEISEAFVQRA--QDHLRLGQTVVVKVLEH 646

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVI 753
             ++  ++ ++ K    SS D+         ++K A              +   ++G S++
Sbjct: 647  VAKQSKVIVTRK---VSSEDSE--------KQKAA--------------INDLVVGRSIV 681

Query: 754  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVA 803
            +  V E     VVV   +   + G I    L+ + +E           GS +Q  ++D  
Sbjct: 682  DVTVVEKTKDSVVVELNDVG-LRGVIYVGHLSDSKLEQNRALLKKLRIGSSLQGVVMDKD 740

Query: 804  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKE 858
               R+ ++S K   I   ++A+ +         ++   +  +H  V +I +         
Sbjct: 741  VKTRVFNMSCKKSLI---KDASKDILPLTFVDIKDKDPNTPMHGYVKSISDRGIFVAFTG 797

Query: 859  NYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 918
             ++ L LP Y       +    +   F  K+F   QSV  TV  L +     R LL    
Sbjct: 798  KFVGLVLPSY-------ATESRDVDIF--KKFYINQSV--TVYLLRTDEENERFLL---T 843

Query: 919  ISETETSSSKR---------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 963
            +S  +TS+ K                 K  S Y VG++ +A +  +K  +L +      H
Sbjct: 844  MSPPQTSNKKEDSNHDVAAVNPVDASVKIISQYSVGTVTKARVKSVKKTQLNVVLADNLH 903

Query: 964  GRIHITEVNDDKSNVVENL---FSNFKIGQTVTARII----AKSNK--PDMKKS---FLW 1011
            GR+  +E+ D    + EN     + FK G  +  ++I    +K++K  P   ++    + 
Sbjct: 904  GRVDASEIYDTFEEI-ENPKEPLAKFKSGDVIDVKVIGFHDSKTHKFLPISHRTGVNTVL 962

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            ELS K S L     G+    E   +  G  + G+V      +  LT+S  LKA++   + 
Sbjct: 963  ELSAKKSALK----GAYQPIEFSGMKNGDELIGFVNNFAKGFIWLTLSPALKAKIPDFEL 1018

Query: 1072 AYEPSELQ-EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1130
            + + S         F +G A+   V  ++   K++ +  R           DI +     
Sbjct: 1019 SDDGSVFTGNLDESFPLGCALKVKVKELDPAHKIVSVSARKHA------ITDIKD----- 1067

Query: 1131 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
             I   D +  RI K+      L++ +G  L G    T+  N           E      S
Sbjct: 1068 -IKVADKLPARIVKVADSY--LLLDLGNRLTGVAFVTDALN-----------EFSLSLRS 1113

Query: 1191 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
             Y++  G  +   V+ +    +    + LSLR+                 D   +++   
Sbjct: 1114 VYEDKIGSMILASVVGVDVENK---KINLSLRTE----------------DATDRYILSH 1154

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            +DL    +V+G++K+VT KG F+ LSR L A V +S L+D Y++  +K +   + + G+V
Sbjct: 1155 KDLKQGDVVRGFIKSVTDKGIFVYLSRTLQAFVPVSKLTDAYIKEWKKFYKTMQPITGKV 1214

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-N 1367
            ++ E  S R+ +T+K S+        + + ++L  GDI  G +K V  +G+F+ + NT N
Sbjct: 1215 VNCESDS-RILLTMKESEV-NGELKILKSYADLKSGDIFDGSVKNVTDFGVFVKLHNTLN 1272

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GL H SE+S+  +D++  ++  G+KVK  ILK + EK ++SLG+K+SYF+   D+   
Sbjct: 1273 VTGLAHKSEISDSKIDDLSLLFGEGDKVKAIILKTNPEKNQVSLGLKASYFQKAHDD--- 1329

Query: 1428 SSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNL 1487
              E E  E+IEE      +    +   A++D++ E             + A  P  E + 
Sbjct: 1330 EDEAEPAESIEEANGEEINGEASDEDEAMEDIEYE------------HTPADAPSHETSS 1377

Query: 1488 DDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK----------KKEKEEREQEIRAAEER 1537
               +  +  G+S + G    A  +D+  NR              K+ ++ ++   A  +R
Sbjct: 1378 KAHKEAVPTGLSLSAGFDWTASILDQ--NREDNEESSEDEDFTSKKAKKNKKRHAAVIDR 1435

Query: 1538 LLEKD--APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1595
             ++ +  AP +  +FERL+  +PNSS +W+ YMAF L +++VEKAR +AERAL+TI+ RE
Sbjct: 1436 TVDINTKAPESVGDFERLIMGNPNSSVIWMNYMAFQLQLSEVEKARELAERALKTISFRE 1495

Query: 1596 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1655
            E+EKLNIW+A  NLEN +G   +E +  VF+RA QY D   +H+ L+ +Y  + ++  A 
Sbjct: 1496 EHEKLNIWIAMLNLENTFGT--DETLEDVFRRACQYMDAYTIHMKLISIYAMSSKDDKAV 1553

Query: 1656 ELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAIL 1713
            EL     KKF   +  +W+   + LL  +Q +  +AV+ +AL SLPR  HI  + + A L
Sbjct: 1554 ELYKAAAKKFGSENVSLWVSWGEFLLTHEQPDEARAVLAQALKSLPRRSHIDVVRKFAQL 1613

Query: 1714 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1773
            EF  G  ++GR++FEG+L++ PKR D+W++YLDQEI+  +      LFER +   L  K+
Sbjct: 1614 EFAKGDPEQGRALFEGLLADAPKRIDIWNVYLDQEIKSSNRARADALFERVLVAKLSRKQ 1673

Query: 1774 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
             KF F K+L+  +S  ++  +EY+K +A +YV
Sbjct: 1674 AKFFFNKWLQLAESTDDQRGVEYIKARAADYV 1705



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 266/1191 (22%), Positives = 503/1191 (42%), Gaps = 163/1191 (13%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI------LDNEIEANEDNL 57
            + +++G  L G +  VN  DL I L  GLRG     +   P       LD  +++  ++ 
Sbjct: 108  KGLTSGTVLLGQLCGVNRTDLCIALTDGLRGYVPLTNISAPFTSLLEQLDQSMDSGSEDE 167

Query: 58   -----------------LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLS 94
                             LP +   F +GQ + C+V++   LD  KK+    +I LS+  S
Sbjct: 168  DDDSDDEQRDKPHTITELPELSKYFTLGQWLRCVVVKNSALDSQKKK--NSRIELSIEPS 225

Query: 95   LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-L 153
             +      E + +   +   VKSIEDHG +L  G+   TGF+   +L++    DV PG +
Sbjct: 226  KV-NLFETEDLAKHTTVQCAVKSIEDHGALLDLGVQDVTGFISNKDLSKMG--DVMPGSV 282

Query: 154  LLQGVVRSIDRTRKVVY-LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 212
             L  + +  DRT  V +  ++    VS+         S+D ++PG  +    + I  +G+
Sbjct: 283  FLANITKRGDRTATVNFEFTAKNSKVSQIS-------SVDAVIPGHTIDFLCEKITNHGI 335

Query: 213  MLSFLTYFTGTVDIFHLQN---TFPTTNWKNDYNQHKKVNARILFVDPTSRAVG------ 263
            +        G +D F  ++    F  T+ K+ Y     +  RI+    T +         
Sbjct: 336  IGKAF----GVLDGFLSESQARVFSVTDMKHKYAIGSNIKVRIIATLRTKQGNKVILVSA 391

Query: 264  ----LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD 319
                L+L   LL   A  +   VG ++D  K++  D              S   YV++SD
Sbjct: 392  LPHILSLERNLLETEAMHA-FPVGYVFDNCKLLGRD--------------SQYLYVSLSD 436

Query: 320  --VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV 377
              + +  + K      +   V+ R+ G+  ++G                  +D+  G ++
Sbjct: 437  ERIGQIHISKAGDAITQ-EAVKARVTGYNTVDGYYQLTSDPKLLAKPYLRSADIPVGTIL 495

Query: 378  KG-KVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK- 434
             G ++ AV   G  +  F G  KA     H+S+  +V P +KFK+G+++  RVL V +K 
Sbjct: 496  SGCEITAVSGNGIELSLFDGQFKAFVAPLHISDIRLVYPERKFKIGSKVKGRVLHVDNKG 555

Query: 435  RITVTHKKTLVK---SKLAILSSYAE----ATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
            R+ VT KK+LV    S + ++S + +    A +   T   +   +  GC V F   ++ F
Sbjct: 556  RVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEEDGKTLATVESFKPSGCVVTFLGNLKAF 615

Query: 488  APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 547
             P  E+             +GQ V  +++  +    ++ ++  +  +  SE     +  L
Sbjct: 616  LPNKEISEAFVQRAQDHLRLGQTVVVKVLEHVAKQSKVIVTRKVS-SEDSEKQKAAINDL 674

Query: 548  VSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 600
            V G  +VDV     T ++VVV +   G  +G I   HL+D  LE    +   ++ G    
Sbjct: 675  VVGRSIVDVTVVEKTKDSVVVELNDVGL-RGVIYVGHLSDSKLEQNRALLKKLRIGSSL- 732

Query: 601  QLLVLDNESSNLL--LSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCF 653
            Q +V+D +    +  +S K SLI  A +  LP    D     PN+ +HGYV +I + G F
Sbjct: 733  QGVVMDKDVKTRVFNMSCKKSLIKDASKDILPLTFVDIKDKDPNTPMHGYVKSISDRGIF 792

Query: 654  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR--ITLSLKQSCCS 711
            V F G+  G    S A + +  D+ K +Y+ QSV   +L  + E  R  +T+S  Q+   
Sbjct: 793  VAFTGKFVGLVLPSYATESRDVDIFKKFYINQSVTVYLLRTDEENERFLLTMSPPQTSNK 852

Query: 712  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSF 769
              D++           +A +       + +K +  + +G+V + +V   +     VV++ 
Sbjct: 853  KEDSN---------HDVAAVNPVD---ASVKIISQYSVGTVTKARVKSVKKTQLNVVLAD 900

Query: 770  EEHS--------DVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFID 819
              H         D +  I + +   A  +SG VI   ++    +K  + + +S +T  ++
Sbjct: 901  NLHGRVDASEIYDTFEEIENPKEPLAKFKSGDVIDVKVIGFHDSKTHKFLPISHRT-GVN 959

Query: 820  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 879
               E ++ + A K           G +Q +     +   + L+  +  +     + ++S 
Sbjct: 960  TVLELSAKKSALK-----------GAYQPIE-FSGMKNGDELIGFVNNFAKGFIWLTLSP 1007

Query: 880  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 939
                K P  +  +  SV    +   S      L + +K +       S  A+K +  D+ 
Sbjct: 1008 ALKAKIPDFELSDDGSVFTGNLD-ESFPLGCALKVKVKELDPAHKIVSVSARKHAITDIK 1066

Query: 940  SL-----VQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTA 994
             +     + A I ++    L L  G    G   +T+  ++ S  + +++ + KIG  + A
Sbjct: 1067 DIKVADKLPARIVKVADSYLLLDLGNRLTGVAFVTDALNEFSLSLRSVYED-KIGSMILA 1125

Query: 995  RIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1054
             ++      D++   +  LS++    T      + +    D+  G  V G++  V ++  
Sbjct: 1126 SVVG----VDVENKKI-NLSLRTEDAT-----DRYILSHKDLKQGDVVRGFIKSVTDKGI 1175

Query: 1055 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1105
             + +SR L+A  F+  S    + ++E+++ +   + +TG V++   + ++L
Sbjct: 1176 FVYLSRTLQA--FVPVSKLTDAYIKEWKKFYKTMQPITGKVVNCESDSRIL 1224


>gi|452986595|gb|EME86351.1| hypothetical protein MYCFIDRAFT_45277 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1795

 Score =  361 bits (927), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 401/1548 (25%), Positives = 701/1548 (45%), Gaps = 222/1548 (14%)

Query: 373  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV- 431
            PG +    V  V   G   +  G +       H +   +    KKFK+G++L  R+    
Sbjct: 353  PGTLANVLVTEVTPLGIAGKIMGLLDVTADTVHSNAVGVEDMSKKFKIGSKLKARITYAL 412

Query: 432  ----KSKRITVT---H--KKTLVKSKL---AILSSYAEATD--------RLITHGWITKI 471
                +S ++ V+   H    T   +KL   A     A+A +        +++    +T++
Sbjct: 413  PQVDESTKVGVSLLDHVLALTPAPTKLPGNATFKLKAQAKEIEQALPLSKILDEAKVTRV 472

Query: 472  -EKHGCFV-------RFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIP 520
              + G F+       R    +  FA  S+L    +D     S  Y  G V K R++S  P
Sbjct: 473  LSQQGVFLAVSRKEGRGERTITAFAHISQLSDQHIDTLSSTSGSYKPGTVHKARVLSYNP 532

Query: 521  ASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAVVVYVIAK--GYSKGT 573
                  +S    ++    +  +DL K+G  V G VD  +    + V  ++ K      G 
Sbjct: 533  IDDIYRVSLKQSVLDQAFLRLEDL-KVGQTVKGSVDKLIYGSKSGVTGILVKLSDNVNGL 591

Query: 574  IPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLI-NSAQQLPSDA 631
            +P  HL+D        +S  + G E   ++L +  E   + L+ K SL+ + +  L  D 
Sbjct: 592  VPEMHLSD--TQLRFPESKFRAGSEVKARVLSVHPEERQIRLTLKKSLLEDDSTSLWKDY 649

Query: 632  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
              + P     G +  + + G  ++F G +  + P ++  +      S+ Y +GQ+V   I
Sbjct: 650  HDLEPGMTSRGTIIALHDNGAVIQFYGAVRAWLPVAEMSESWIESPSEFYRLGQTVNVRI 709

Query: 692  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 751
            + V+ E  R    +K +C    D  F QE     ++I        +G EL          
Sbjct: 710  VSVSPEAER----MKVTCKDGGD--FTQEQSDAWDRI--------HGGEL---------- 745

Query: 752  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 811
             +   V E     +++  +     +G     +L      S +  Q+A+  +   E+L +L
Sbjct: 746  -VSACVTEKTADSILLDLD-----HGLKGIIRLGHLVDNSEAKAQSAMKRIRVGEKLKNL 799

Query: 812  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
                + +D                K+E S+ + +    + + +  K   L+ S  +    
Sbjct: 800  ----LVLD----------------KQERSRTVVLSNKPSMVKDAAKPGKLIKSFSDARPG 839

Query: 872  IGYASVSDYNTQKFPQKQFLNGQ-SVIATVMALPSSS----------------------T 908
            I +       TQ     +F NG   +I   + LP  S                      T
Sbjct: 840  IKFHGFVRNITQDSVYAEFPNGVVGLITKSLLLPEMSNQPSFGLRRDQTLTVWVTDVDLT 899

Query: 909  AGRLLLLLK---AISETETSSSKRAKKK-------------SSYDVGSLVQAEITEIKPL 952
              R LL ++     ++TETS ++ A +              + + +G++V+A I  +K  
Sbjct: 900  RQRFLLTMREPGQSAQTETSENRNATESDVKNAVDPAISSMADFALGTVVKARIASVKAT 959

Query: 953  ELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQ--TVTARIIAKSNKPDMK-- 1006
            ++ ++      GR+ ++EV D   ++        N K+ Q  T+  +I+   +    +  
Sbjct: 960  QINVRLADNVQGRVDVSEVFDSWDDITNKAAPLQNDKLKQNDTIDVKILGIHDARSHRFL 1019

Query: 1007 -------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1059
                   K  ++ELS KPS +     G + L     V  G     +V    +      +S
Sbjct: 1020 PISHRGGKVPVFELSAKPSRV---RGGDESLLAMDSVKQGASYLAFVNNHSDNCVWANLS 1076

Query: 1060 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
             +++ ++ ++D + +  +LQ  + RF +G A+   V S++     L L  +   + ++ K
Sbjct: 1077 PNVRGRVSLMDLSDDVGQLQNVENRFRVGCALQVKVKSVDTTSNKLDLTAK---ENLTRK 1133

Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
             + +           G +V  R++KI     G+ V I   +   V   EL     SD   
Sbjct: 1134 ELSL-----------GMVVPARVTKISEH--GITVMIADDIVCHVPLVEL-----SDDYD 1175

Query: 1180 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1239
              + GQ      + + + V+  V+ +S   +  F   +SLR S           LS+ + 
Sbjct: 1176 QTNPGQ------HRKNEVVRVCVVGLSLPDKRVF---VSLRPS---------KVLSSSLP 1217

Query: 1240 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1299
                H+ +   L P  IV+G+VK V  KG F+ L  ++DA V +S+LSD +V+     + 
Sbjct: 1218 VKDAHITEASQLKPGAIVRGFVKRVAEKGIFVSLGSRVDALVHISDLSDQFVKDWPSIYE 1277

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            + +LV GRV++V+  S +V+++LK S      Q  +  + +L  G  V G++++VE +G 
Sbjct: 1278 VNQLVQGRVVTVDAASGQVQLSLKRSHVDNDYQPPMT-IHDLKQGMTVTGKVRKVEDFGA 1336

Query: 1360 FITIENTN--LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1417
            F+ I+NT   L GLCH SE++   ++++   Y +G+ VK K+L VD + R+ISLG+K+SY
Sbjct: 1337 FVDIDNTQPRLSGLCHRSEVAAKRIEDVRKHYSSGDVVKAKVLSVDPDSRKISLGLKASY 1396

Query: 1418 FKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESR 1477
            F N+A+     SE+ES +  E+V   +   + E S         ++E G  + L++++  
Sbjct: 1397 FSNEAE----ISEDESGDESEDVDMEDGVEVEEES---------DAEGGVEVDLSELQEA 1443

Query: 1478 ASVPP-----LEVNLDDEQPDMDNGISQ---NQGHTDEAK-TIDEKNNRHAKKKEKEERE 1528
             S        +EV+ D E   +  G+       G  D  + T  +++       +K +R+
Sbjct: 1444 DSDADEAADAMEVDADIEST-VKGGLKTAGFQWGEPDVGRDTAADESEPETTSTKKRKRK 1502

Query: 1529 QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1588
             EI+      L+K  PR+  +FER + S PN+S +WI+YMAF L +++V+KAR IAERAL
Sbjct: 1503 PEIKEDRTGDLDKFGPRSDSDFERHLLSQPNNSGLWIQYMAFQLELSEVQKARDIAERAL 1562

Query: 1589 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1648
            +TI+IRE  EK++IWVA+ N+E EYG+  +E V  VF+RA +  DP ++H  L  +Y   
Sbjct: 1563 RTIHIRETEEKMHIWVAWLNMEIEYGD--DERVEDVFKRACEVQDPLEMHERLANIYISA 1620

Query: 1649 EQNKLADELLYKMI--KKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHI 1704
             +   AD +  K++  K F+ S  VW      L+      +  +A+  RAL S+   ++ 
Sbjct: 1621 GRLDQADAVFEKIVANKNFRASPDVWYNYATFLMNNLGAADRARALQSRALKSISPKENR 1680

Query: 1705 KFISQTAILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
            K +++ A LEF  +NG A+RGRS+FE ILS+ P  +  W  ++D E     +D  R L+E
Sbjct: 1681 KLVAKFAALEFHSENGTAERGRSVFEAILSDSPHWSSGWDQWVDLERSREAIDKTRALYE 1740

Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            R     +  ++ KF+FKK+LEYE+  G+E+ +E VK  A EYV    A
Sbjct: 1741 RISQQKMKKRRAKFVFKKWLEYEEKEGKEKDVERVKALASEYVRKLAA 1788



 Score =  167 bits (423), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 182/745 (24%), Positives = 327/745 (43%), Gaps = 90/745 (12%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE----ANEDNL-- 57
           +N++ G  + G +  + ++D+ + LP  + G A+   ++ P +++++E    A E++   
Sbjct: 134 KNLTVGSVVLGRITAITDRDIALALPNNMTGYAKIT-SISPKVNSKLEQIMLAEEEDAEE 192

Query: 58  -----LPTIFHVGQLVSCIVLQL---DDDKKEIGK------RKIWLSLRLSLLYKGLSLE 103
                L  +FH+GQ +   V       ++ K+ GK      + I LS+  +     LS +
Sbjct: 193 HGDVDLKELFHIGQWLRAAVTATATEPEEGKDKGKGQSKPKKHIELSIEPAATNGRLSAD 252

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVR 160
           +V     + A V+S+EDHG ++  GL     TGF+ +  L     +   K G ++  +V 
Sbjct: 253 SVVTHSTIQASVRSVEDHGLVMDVGLIEEHATGFIAKKALGAAWELSKAKEGQVMLCLV- 311

Query: 161 SIDRT----RKVVYLSSDPDTVSKC-----VTKDLKGISIDLLVPGMMVSTRVQSILENG 211
             D+     RKV+ LS D + ++       V  D    ++D  +PG + +  V  +   G
Sbjct: 312 -TDKVGGDGRKVLKLSPDFNKLNGSQSNAPVVSD--APTVDAFLPGTLANVLVTEVTPLG 368

Query: 212 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT---SRAVGLTLNP 268
           +    +     T D  H  N     +    +    K+ ARI +  P    S  VG++L  
Sbjct: 369 IAGKIMGLLDVTADTVH-SNAVGVEDMSKKFKIGSKLKARITYALPQVDESTKVGVSLLD 427

Query: 269 YLLHNRAPPSHVK-------------------VGDIYDQSKVVRVDRGLGLLLDIPSTP- 308
           ++L     P+ +                    +  I D++KV RV    G+ L +     
Sbjct: 428 HVLALTPAPTKLPGNATFKLKAQAKEIEQALPLSKILDEAKVTRVLSQQGVFLAVSRKEG 487

Query: 309 ---VSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFE 362
               +  A+  IS ++++ +  L      YK G+  + R+L +  ++ +    LK S  +
Sbjct: 488 RGERTITAFAHISQLSDQHIDTLSSTSGSYKPGTVHKARVLSYNPIDDIYRVSLKQSVLD 547

Query: 363 GLVFTHSDVKPGMVVKGKVIAV------DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 416
                  D+K G  VKG V  +         G +V+    V  L P  H+S+ ++  P  
Sbjct: 548 QAFLRLEDLKVGQTVKGSVDKLIYGSKSGVTGILVKLSDNVNGLVPEMHLSDTQLRFPES 607

Query: 417 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKS-KLAILSSYAEATDRLITHGWITKIEK 473
           KF+ G+E+  RVL V  + ++I +T KK+L++    ++   Y +    + + G I  +  
Sbjct: 608 KFRAGSEVKARVLSVHPEERQIRLTLKKSLLEDDSTSLWKDYHDLEPGMTSRGTIIALHD 667

Query: 474 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 533
           +G  ++FY  V+ + P +E+       PS  Y +GQ V  RI+S  P + R+ ++     
Sbjct: 668 NGAVIQFYGAVRAWLPVAEMSESWIESPSEFYRLGQTVNVRIVSVSPEAERMKVTCKDGG 727

Query: 534 TRVSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE--HAT 587
               E     D +  G LVS  V   T +++++  +  G  KG I   HL D+ E    +
Sbjct: 728 DFTQEQSDAWDRIHGGELVSACVTEKTADSILLD-LDHGL-KGIIRLGHLVDNSEAKAQS 785

Query: 588 VMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSAQ---QLPSDASHIHPNSVVHG 642
            MK  I+ G +   LLVLD +  S  ++LS K S++  A    +L    S   P    HG
Sbjct: 786 AMKR-IRVGEKLKNLLVLDKQERSRTVVLSNKPSMVKDAAKPGKLIKSFSDARPGIKFHG 844

Query: 643 YVCNIIETGCFVRFLGRLTGFAPRS 667
           +V NI +   +  F   + G   +S
Sbjct: 845 FVRNITQDSVYAEFPNGVVGLITKS 869



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 125/302 (41%), Gaps = 36/302 (11%)

Query: 64   VGQL--------VSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 115
            VGQL        V C  LQ+     +    K+ L+ + +L  K LSL     GMV+ A V
Sbjct: 1092 VGQLQNVENRFRVGC-ALQVKVKSVDTTSNKLDLTAKENLTRKELSL-----GMVVPARV 1145

Query: 116  KSIEDHG--------YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRK 167
              I +HG         + H  L   +    + N  ++   +V     ++  V  +    K
Sbjct: 1146 TKISEHGITVMIADDIVCHVPLVELSDDYDQTNPGQHRKNEV-----VRVCVVGLSLPDK 1200

Query: 168  VVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
             V++S  P  V  S    KD        L PG +V   V+ + E G+ +S  +     V 
Sbjct: 1201 RVFVSLRPSKVLSSSLPVKDAHITEASQLKPGAIVRGFVKRVAEKGIFVSLGSRVDALVH 1260

Query: 226  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN-PYLLHNRAPPSHVKVGD 284
            I  L + F   +W + Y  ++ V  R++ VD  S  V L+L   ++ ++  PP  + + D
Sbjct: 1261 ISDLSDQF-VKDWPSIYEVNQLVQGRVVTVDAASGQVQLSLKRSHVDNDYQPP--MTIHD 1317

Query: 285  IYDQSKV---VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 341
            +     V   VR     G  +DI +T          S+VA + +  + K Y  G  V+ +
Sbjct: 1318 LKQGMTVTGKVRKVEDFGAFVDIDNTQPRLSGLCHRSEVAAKRIEDVRKHYSSGDVVKAK 1377

Query: 342  IL 343
            +L
Sbjct: 1378 VL 1379



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 141/328 (42%), Gaps = 39/328 (11%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKPGL 153
            L++++V++G    A+V +  D+    +   P+  G +   +L+++ G         + G 
Sbjct: 1048 LAMDSVKQGASYLAFVNNHSDNCVWANLS-PNVRGRVSLMDLSDDVGQLQNVENRFRVGC 1106

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
             LQ  V+S+D T   + L     T  + +T+  K +S+     GM+V  RV  I E+G+ 
Sbjct: 1107 ALQVKVKSVDTTSNKLDL-----TAKENLTR--KELSL-----GMVVPARVTKISEHGIT 1154

Query: 214  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK---VNARILFVDPTSRAVGLTLNPYL 270
            +         V +  L + +  TN      QH+K   V   ++ +    + V ++L P  
Sbjct: 1155 VMIADDIVCHVPLVELSDDYDQTN----PGQHRKNEVVRVCVVGLSLPDKRVFVSLRPSK 1210

Query: 271  LHNRAPP---SHVKVGDIYDQSKVVR--VDRGL--GLLLDIPSTPVSTPAYVTISDVAEE 323
            + + + P   +H+          +VR  V R    G+ + + S      A V ISD++++
Sbjct: 1211 VLSSSLPVKDAHITEASQLKPGAIVRGFVKRVAEKGIFVSLGS---RVDALVHISDLSDQ 1267

Query: 324  EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV---FTHSDVKPGMVVKGK 380
             V+     Y+    V+ R++      G     LK S  +       T  D+K GM V GK
Sbjct: 1268 FVKDWPSIYEVNQLVQGRVVTVDAASGQVQLSLKRSHVDNDYQPPMTIHDLKQGMTVTGK 1327

Query: 381  VIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            V  V+ FGA V        L  L H SE
Sbjct: 1328 VRKVEDFGAFVDIDNTQPRLSGLCHRSE 1355



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 9/181 (4%)

Query: 369  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
            S +KPG +V+G V  V   G  V     V AL  +  +S+  +      ++V   +  RV
Sbjct: 1227 SQLKPGAIVRGFVKRVAEKGIFVSLGSRVDALVHISDLSDQFVKDWPSIYEVNQLVQGRV 1286

Query: 429  LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--- 483
            + V   S ++ ++ K++ V +      +  +    +   G + K+E  G FV   N    
Sbjct: 1287 VTVDAASGQVQLSLKRSHVDNDYQPPMTIHDLKQGMTVTGKVRKVEDFGAFVDIDNTQPR 1346

Query: 484  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL----SFMMKPTRVSED 539
            + G   RSE+      +    Y  G VVK +++S  P SR+I+L    S+      +SED
Sbjct: 1347 LSGLCHRSEVAAKRIEDVRKHYSSGDVVKAKVLSVDPDSRKISLGLKASYFSNEAEISED 1406

Query: 540  D 540
            +
Sbjct: 1407 E 1407


>gi|148710080|gb|EDL42026.1| programmed cell death protein 11 [Mus musculus]
          Length = 1643

 Score =  360 bits (924), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 367/1361 (26%), Positives = 603/1361 (44%), Gaps = 201/1361 (14%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 78   ESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLL 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  LD    E GK+ + LS+    + K LS + ++ GM+LT  V 
Sbjct: 138  RLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FL      E     N G   K G  L  VV  +     VV L
Sbjct: 196  SLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S +   VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+ 
Sbjct: 256  SVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE- 314

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                      Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D 
Sbjct: 315  ----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDD 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  +
Sbjct: 371  VPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++
Sbjct: 428  DELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+  G E+  RVL    ++K++ +T KKTLV SKL++++ Y  A   L THG
Sbjct: 488  IMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHG 547

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
             I +++ +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ 
Sbjct: 548  VIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERML 607

Query: 527  LSFMMKPTRVSEDD----------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            LSF +      +D            V++G LV   V   T   + V ++    +   +PT
Sbjct: 608  LSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPT 666

Query: 577  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
             HL+DH                          ++N  L   +       Q P   S I P
Sbjct: 667  PHLSDH--------------------------AANGPLLHHWLQTVEGGQDPKSLSEIQP 700

Query: 637  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              ++ G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V+ 
Sbjct: 701  GMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDE 760

Query: 697  ETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSV 752
               R+ LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G V
Sbjct: 761  SKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGMV 820

Query: 753  IEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 811
            ++  VHE   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V +
Sbjct: 821  LDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEVHV 880

Query: 812  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
            SL    ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  H 
Sbjct: 881  SLHQDLVNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETGHL 922

Query: 872  IGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 930
            + ++ +S  N T  F  ++   GQ V  T+       TA                     
Sbjct: 923  VAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTAD-------------------- 962

Query: 931  KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 990
                                          GF G IH + + DD   V  +  +  K G+
Sbjct: 963  ------------------------------GFVGCIHASRILDD-VPVGTSPTTTLKAGK 991

Query: 991  TVTARIIA----KSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSI--- 1038
             VTAR+I     K+ K  P     F   + ELS++PS L  S        E     I   
Sbjct: 992  KVTARVIGGRDVKTYKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQY 1051

Query: 1039 --GQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
              GQ VT +   Y V  +W  + I   ++ ++ +L ++     L+   ++F +G+A+   
Sbjct: 1052 QAGQTVTCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEAT 1111

Query: 1095 VLSINKEKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1153
            V+  +  +  L L ++ P++                  + EG++  GR+ K++    GL 
Sbjct: 1112 VVDPDVPRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLT 1152

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V       G+V    L +         Y E    PL  +   + V+C +L  +  V    
Sbjct: 1153 VSFPFGKIGKVSMFHLSD--------SYSEA---PLEDFCPQKIVRCYILSTAHRV---- 1197

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
             + LSLRSS     + N       ++ P   +  IED+    +++GYVK V      I L
Sbjct: 1198 -LALSLRSSRTNRETKNR------IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGL 1248

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
               +      S++S+     PEKE   G L  G++++ + L
Sbjct: 1249 GPSVLGLAKYSHVSECV--PPEKELYNGCLPEGKLVTAKEL 1287



 Score =  276 bits (705), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 135/280 (48%), Positives = 194/280 (69%), Gaps = 3/280 (1%)

Query: 1529 QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1588
            +E   +E+    +  P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL
Sbjct: 1359 EESSDSEDEQPHQAKPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERAL 1418

Query: 1589 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1648
            +TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++
Sbjct: 1419 KTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKS 1476

Query: 1649 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFI 1707
            E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +H+  I
Sbjct: 1477 EKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVI 1536

Query: 1708 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1767
             + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I L
Sbjct: 1537 VKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIHL 1596

Query: 1768 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            SL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1597 SLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1636



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1324 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1383
             +   T+  S I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 523  KT-LVTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580

Query: 1384 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 581  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611



 Score = 43.9 bits (102), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 90/420 (21%), Positives = 163/420 (38%), Gaps = 77/420 (18%)

Query: 954  LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1013
             RLK G+  + R+  + ++D K          FK G T   RII  S   +     L  L
Sbjct: 384  FRLKDGVLAYARV--SHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDE-----LALL 433

Query: 1014 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1073
            S++ S++              D+ IG  V G V  +     L+ +   +K  +  +  A 
Sbjct: 434  SLRKSIIAAP------FLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLA- 486

Query: 1074 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1133
                ++  ++++  G  V   VL  + E K L + L+        KT+  S  ++ T  +
Sbjct: 487  -DIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK--------KTLVTSKLSLIT-CY 536

Query: 1134 EGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF----- 1186
            EG   G +   ++  V   G +V+    + G V   EL    + DP + +  GQ      
Sbjct: 537  EGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAV 596

Query: 1187 -----------------------DP--------LSGYDEGQFVKCKVLEISRTVRGTFHV 1215
                                   DP              GQ V  KVLE ++T      V
Sbjct: 597  LSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKT---GLEV 653

Query: 1216 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE---------DLSPNMIVQGYVKNVTS 1266
             +   ++   + + + SD + +       L+ +E         ++ P M++ G+VK +  
Sbjct: 654  AILPHNTPAFLPTPHLSDHAANGPLLHHWLQTVEGGQDPKSLSEIQPGMLLIGFVKCIKE 713

Query: 1267 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
             G F+     L      + +SD +V +P + F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 714  YGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSD 773


>gi|432848327|ref|XP_004066290.1| PREDICTED: protein RRP5 homolog [Oryzias latipes]
          Length = 1814

 Score =  359 bits (922), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 341/1375 (24%), Positives = 630/1375 (45%), Gaps = 125/1375 (9%)

Query: 1    MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL 57
            ++ +N+  GM + G V  V + ++ + LP GL+G   +    D+   +L +++E+++  +
Sbjct: 77   LHTKNVKVGMLMLGCVKTVADFEVSVGLPCGLQGFLSIKNICDSYTKLLSDQLESDDAEI 136

Query: 58   --LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 115
              LP +FH G ++ C+V QLD  K   G   I LS+   L+ K ++  +++ GMVL+  V
Sbjct: 137  CSLPHLFHPGMVLRCVVAQLDVTKG--GSLSIQLSINPKLVNKSVTSSSLKAGMVLSGCV 194

Query: 116  KSIEDHGYILHFGLPSFTGFLPRNNLA--ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 173
            +S+EDHG I+  G+     FLP   +   +N   +++ G  L  +V  +    +VV LS 
Sbjct: 195  ESVEDHGCIIDIGVNGTKAFLPEEAMKTEQNQLRELRLGQYLTCLVERVKNDGRVVSLSV 254

Query: 174  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
            +P  V++   +  +G S+  L+PG++V + V+ + ++G++L FL+ F+G VD  H++   
Sbjct: 255  NPAAVAQACAEPRQGWSLSNLLPGLLVKSTVKKVTKHGLLLDFLSSFSGQVDFLHMEPE- 313

Query: 234  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQ 288
            PT+     Y +  +V A +L+V+P+SR VGL+L  +LL        +P    ++G++   
Sbjct: 314  PTST----YTEGLQVQACVLYVEPSSRLVGLSLRRHLLQPSSGIEPSPAEGDRIGEVLKG 369

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
             K+  +    G +L++P     +PA+V  + + E      E +         RIL F  +
Sbjct: 370  CKLAAMHHKSGAVLELPD---GSPAFVHRNHLKEPNEPTNENRVYAAPEHTCRILDFSPM 426

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            E +    L+ S  E   + + D+K G VV+G V  + S G +V     +K L P  H+S+
Sbjct: 427  EQIHFATLRKSVIEKPFYRYQDLKAGQVVEGTVSVLLSHGMVVHLSDHIKGLVPRTHLSD 486

Query: 409  FEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
              +  P KK+  G ++  RVL V  + K++ +T KK LV+S L +  +Y++A    ++HG
Sbjct: 487  IVLKNPEKKYAPGMKVKCRVLSVDPEGKKLYLTRKKALVESPLPLFLTYSDARPGRVSHG 546

Query: 467  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            ++  I+  GC VRFYN V+G  P SEL  +P   P  +++VGQV+K  ++   P   ++ 
Sbjct: 547  YVVCIKDFGCIVRFYNDVKGLVPLSELSSEPVVHPEDVFYVGQVLKAAVLQCDPERSKMI 606

Query: 527  LSF-------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            LSF         + T    D    +G  +   V   + N + V ++     +  +PT HL
Sbjct: 607  LSFKAAVEGGAAEATEAHVD--CDVGKRLEAKVVKKSVNGLEVAILPDEI-RAILPTMHL 663

Query: 580  ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL--INSAQQLPSDASHIHPN 637
            +DH+ +  ++   ++ G      +  +  + N+ L+ K ++  I     +  + S +   
Sbjct: 664  SDHVSNCPLLWESLQEGDVISDAVCFNRINLNITLTKKPAVRRILEEGAVAKNFSELTVG 723

Query: 638  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
              + G+V NI+  G FV F   L G AP+S   D   +D +  + +GQ+V + + +++ E
Sbjct: 724  MQLVGWVKNIMPYGVFVEFPYGLLGLAPKSAMSDKFISDATAAFQLGQTVFAKVTNLDEE 783

Query: 698  TGR--ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIE 754
              R  +TL + +  C   D      + L E K      S  +G+EL + +    +G  + 
Sbjct: 784  KRRFLVTLKISEVICPEGDVYTRLINGLQERKAVKEMMSSRDGAELAQSLAALSVGERLM 843

Query: 755  GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
              V    D G +   +  +      +   + G  +  G  + A +L        VDL   
Sbjct: 844  LTVDSVKDSGAIFKSDRLTSATVLASKQHMTGVNLTVGQKVSAPVLH-------VDLLSA 896

Query: 815  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 874
             V++    +    ++   K  +              A V+ V  ++ V+SL +       
Sbjct: 897  CVYVSVLPKLVGKKKTLNKGYR------------YTATVQHVDTDFAVVSLGDTAQLAVI 944

Query: 875  ASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLL--KAISETETSSSKRAK 931
             + +  N     + + L+ G++    V+        G  L+    +A     T+S  +A 
Sbjct: 945  QTRNHLNEVVIHESEKLDVGRTFPVQVVEASCEELQGLPLVSWEHRAPQRQRTTSEGQAG 1004

Query: 932  KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL-FSNFKIGQ 990
             +  +  G  +Q  +  +KP  +++    G  G +H+++V +     V +   S+ K+G 
Sbjct: 1005 SR-GHRFGEFLQGTVRAVKPTCIQVTLEDGSKGSVHVSQVVEPSQVRVGSFPTSSVKVGS 1063

Query: 991  TVTARII----AKSNK--PDMKKSFLW---ELSIKPSMLTVS-EIGSKLLFEECDV-SIG 1039
             VTAR+I    A SN+  P     F +   EL++ PS L  + ++ S    E+ ++   G
Sbjct: 1064 RVTARVIGGWEASSNRFLPFSHPRFTYTIPELTLIPSKLDENVDLPSVSAKEKLELYKAG 1123

Query: 1040 QRVTGYVYK--VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1097
              +T +V K   D     +T    +   + +L    +P +    ++ + +G+AV   V+ 
Sbjct: 1124 DEITCFVSKFHADRRSLEVTTDPSVTGTVELLAMITDPKDAGHPEKLYKLGQAVRAKVVE 1183

Query: 1098 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1157
            +  +     L L     G+               + EG           S   G+V  + 
Sbjct: 1184 VGVKPSRFVLSL----TGVHK-------------LQEG-----------SSSLGIVTAVH 1215

Query: 1158 PHLYGRVH--FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1215
            P L  +V   F+      V D    Y   Q   LS + +GQ V+C +L   +     +H 
Sbjct: 1216 PQLGLQVKLPFSNTGTASVMDLTDAYRPNQ---LSVFSKGQLVRCFLLCQEKE---KWH- 1268

Query: 1216 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1275
             LSLR      S  NS       D     ++ +++L    I++G+VK+V  +G FI LSR
Sbjct: 1269 -LSLRP-----SRLNSKQPKAVKDP---EVKTLDELQAGQIIRGFVKSVGEQGVFIRLSR 1319

Query: 1276 KLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
             +  +  L   +  +V S     +      L++ +VLS++   + VE++L  +D+
Sbjct: 1320 TIIGRAQLQQATQYFVNSHSVLAEHLQPNSLLSTKVLSIDKEKEFVELSLLPADT 1374



 Score =  288 bits (736), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 188/576 (32%), Positives = 299/576 (51%), Gaps = 57/576 (9%)

Query: 1285 NLSDGYVESPEKEFPIGKLVAGRVLSVEP----LSKRVEVTLKTSDSRTASQSEINNLSN 1340
            +L+D Y  +    F  G+LV   +L  E     LS R    L +   +     E+  L  
Sbjct: 1236 DLTDAYRPNQLSVFSKGQLVRCFLLCQEKEKWHLSLRPS-RLNSKQPKAVKDPEVKTLDE 1294

Query: 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKV 1397
            L  G I+ G +K V   G+FI +  T ++G   + + ++  V++   +    +    +  
Sbjct: 1295 LQAGQIIRGFVKSVGEQGVFIRLSRT-IIGRAQLQQATQYFVNSHSVLAEHLQPNSLLST 1353

Query: 1398 KILKVDKEKRRISLGM------KSSYFKNDAD-NLQMSSEEESDEAI-----------EE 1439
            K+L +DKEK  + L +      K        D  L+++ E++    +           E+
Sbjct: 1354 KVLSIDKEKEFVELSLLPADTGKPDVLPESLDLPLRLTGEQKQKHDLRQKRKRQLSEGEQ 1413

Query: 1440 VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQP------- 1492
             G  ++           +    + ED G  V  + E        +     E P       
Sbjct: 1414 KGEESQIPTKNKKKKEKRRAKADGEDSGVEVYFREEDEDEEAEDKPRRSKETPGSSGPSR 1473

Query: 1493 -DMDNGISQNQG-----------HTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1540
              +  G S ++G             + +   D+  +   +KK + E EQ+ +AAE  L++
Sbjct: 1474 LQVTAGFSWDEGLSALKPPSAAQDAESSDAEDQDRSEKTQKKSRRELEQQKKAAERALVQ 1533

Query: 1541 KDA--------PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1592
            ++A        P+    FERL+ +SPNSS +W++YMA  L    +E+ARS+AERAL+TI+
Sbjct: 1534 REAELMDPNLRPQDDSAFERLILASPNSSLLWLQYMAHHLQATQIEQARSVAERALKTIS 1593

Query: 1593 IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1652
             REE EKLN+WVA  NLEN YG   EE++ KVF+RA+Q+C+P  V+  L  +Y ++ + K
Sbjct: 1594 FREEQEKLNVWVALLNLENMYGT--EESLKKVFERAVQFCEPMPVYQQLADIYSKSNKTK 1651

Query: 1653 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1711
             A+ L   M+K+F+ +  VWL     LL+Q Q +   A++QRAL SLP  + +  I++ A
Sbjct: 1652 EAESLYKTMVKRFRQNKGVWLSYGTFLLQQGQSDAASALLQRALASLPAKESVDVIAKFA 1711

Query: 1712 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1771
             LEF+ G  + GR+M + +L+ YPKRTDLWSI++D EI+ G    +R LF+R I LS+  
Sbjct: 1712 QLEFRYGNPETGRNMLDKVLTSYPKRTDLWSIFIDLEIKHGSQKEVRALFDRVIHLSVSA 1771

Query: 1772 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            KK+KF FK+YLEYEK  G  + ++ VK KA+E+VE+
Sbjct: 1772 KKIKFFFKRYLEYEKKHGTAQSVQDVKDKAVEFVEA 1807



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 111/257 (43%), Gaps = 32/257 (12%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            G +V G +S +LS   G+VV +  H+ G V  T L +I + +P     E ++ P      
Sbjct: 452  GQVVEGTVSVLLSH--GMVVHLSDHIKGLVPRTHLSDIVLKNP-----EKKYAP------ 498

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            G  VKC+VL +    +  +   L+ + +L              V++P        D  P 
Sbjct: 499  GMKVKCRVLSVDPEGKKLY---LTRKKAL--------------VESPLPLFLTYSDARPG 541

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             +  GYV  +   GC +     +   V LS LS   V  PE  F +G+++   VL  +P 
Sbjct: 542  RVSHGYVVCIKDFGCIVRFYNDVKGLVPLSELSSEPVVHPEDVFYVGQVLKAAVLQCDPE 601

Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
              ++ ++ K +    A+++   ++ +  VG  +  ++ +    GL + I    +  +   
Sbjct: 602  RSKMILSFKAAVEGGAAEATEAHV-DCDVGKRLEAKVVKKSVNGLEVAILPDEIRAILPT 660

Query: 1375 SELSEDHVDNIETIYRA 1391
              LS DHV N   ++ +
Sbjct: 661  MHLS-DHVSNCPLLWES 676



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
            N S L VG  ++G +K +  YG+F+      L+GL   S +S+  + +    ++ G+ V 
Sbjct: 716  NFSELTVGMQLVGWVKNIMPYGVFVEFP-YGLLGLAPKSAMSDKFISDATAAFQLGQTVF 774

Query: 1397 VKILKVDKEKRRISLGMKSS 1416
             K+  +D+EKRR  + +K S
Sbjct: 775  AKVTNLDEEKRRFLVTLKIS 794


>gi|302424003|ref|XP_003009828.1| rRNA biogenesis protein RRP5 [Verticillium albo-atrum VaMs.102]
 gi|261361662|gb|EEY24090.1| rRNA biogenesis protein RRP5 [Verticillium albo-atrum VaMs.102]
          Length = 1789

 Score =  356 bits (913), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 334/1272 (26%), Positives = 597/1272 (46%), Gaps = 179/1272 (14%)

Query: 612  LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
            + L+ K +L+NS   +      +       G + +I   G  + F   + G+ P S+  +
Sbjct: 611  MRLTLKKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSE 670

Query: 672  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 731
                D  + + VGQ V  +IL+V+ E  ++ +S K               F L+++ A+ 
Sbjct: 671  AFIQDPKEHFKVGQVVNVHILEVDPENQKLLVSCKDPSA-----------FGLDKQAAL- 718

Query: 732  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 791
                         +   +GS++ GKV + +D  V V  +  S++   +   QL   T +S
Sbjct: 719  -------------KALSVGSIVSGKVIQKSDDDVHVELD-GSNLKAILPLGQL---TDKS 761

Query: 792  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA---QKKKRKREASK------- 841
             +  Q+A+  +   + L DL    + +D+    N  R+A     K    EA K       
Sbjct: 762  ANKSQSALKRIHMGQTLTDL----LVLDK----NERRRAITLSSKPSLVEAGKTDKLIRT 813

Query: 842  --DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQKQFLNGQSV 896
              D  V   V   +  ++   +++        + + +   V D   + F  ++    QS+
Sbjct: 814  YADAKVGAEVPGFISSIRPGAVLVRFGGNLVGVMFKTRLPVEDQEKEGFGLRK---DQSI 870

Query: 897  IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS---------YDV--GSLVQAE 945
               + A+    T    L++    +E  ++  K  K+K S          D+  G +V+A+
Sbjct: 871  TVRIRAIDLERTR---LVVDPLTAELPSNEVKPKKEKESARPQAHGPVQDITFGQIVEAK 927

Query: 946  ITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARIIAKSNKP 1003
            I  I   +L ++      GR+ I+++ D  DK    E   S FK G TV  R I   +  
Sbjct: 928  IVGIHDTQLNVETADKVQGRVDISQIFDSWDKIKDPEEPLSQFKKGDTVRVRAIGLHDSK 987

Query: 1004 DMK------KSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1055
            D +      +S+  + E + K S +  +++   L  E  D+ +G     +V         
Sbjct: 988  DHRFLAFSHRSYNSVLEFTAKASDIE-ADVLKPLSLE--DLEVGSTHVAFVNNASRNGLW 1044

Query: 1056 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1115
              IS  ++ ++  +D + + S++ +    F IG A+   V++++ ++ +L L  R     
Sbjct: 1045 ANISPVVRGRINAMDVSDDTSKINDVINNFPIGTALKVRVIAVDAKRGVLDLSAR----- 1099

Query: 1116 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1175
             SD +  ++ D+    I    ++ G + K+      ++V++G ++ G VH  ++ +    
Sbjct: 1100 -SDSSAAVTWDS----IKPNQVLAGCVVKV--NERQIMVKLGSNVAGHVHLVDMSD---- 1148

Query: 1176 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1235
                  D G  + L  YDEG  ++  V+E+ ++ +    V LS R S       NSS   
Sbjct: 1149 ------DFGDVNTLK-YDEGDAIQVSVVEVDKSNK---RVRLSTRPS----RVLNSSSPI 1194

Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
            TD       +  ++ +     V+G+VK+V  KG F++L   + A V +SNLSD +++  +
Sbjct: 1195 TD-----SEITSVKQVVSGSTVRGFVKHVADKGVFVLLGGSVSALVKISNLSDRFLKEWK 1249

Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1355
            + F + +LV GRVLSV+  + +VE++LK+S     +   +    ++    IV G+I++VE
Sbjct: 1250 EHFQVDQLVKGRVLSVDEGAGQVELSLKSS-VVDDNYKPLKTYKDIKPNQIVTGKIRKVE 1308

Query: 1356 SYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             +G FI ++ + N+ GLCH SE+++  V++   +Y+AG+ VK K+L +D+ K+RIS G+K
Sbjct: 1309 DFGAFIVVDGSDNVSGLCHRSEMADSPVEDARKLYQAGDVVKAKVLTLDRNKKRISFGLK 1368

Query: 1415 SSYFKNDADNLQMSSEE-----------------------ESDEAIEEVGSYNRSSLLEN 1451
             +YF  D D   M   E                       E   +I+ +G+ N     + 
Sbjct: 1369 PAYFDEDVD---MDEGEGAGLDSDNEDEEDVDSDEGEDLAEGGASIKFMGTDNLEDSDDE 1425

Query: 1452 SSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHT-----D 1506
               A  D D++ EDG                 +V++  EQ  + NG     G        
Sbjct: 1426 QDHADSDSDVD-EDG-----------------DVDMSMEQNGLSNGKYDWDGDAFDDSDK 1467

Query: 1507 EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIK 1566
            E ++   K++   +K+ K+ +  EI+      L+ + P+T  ++ERL+   P+SS +WI 
Sbjct: 1468 ETRSAPAKSSASKQKETKKPKTDEIQVDRTVALDANGPQTASDYERLLLGQPDSSALWIA 1527

Query: 1567 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1626
            YMA  + ++++ KAR IAERA++TINIRE+ EKLN+W+AY NLE  YG   +  V +VFQ
Sbjct: 1528 YMALQMRVSELTKAREIAERAIKTINIREQTEKLNVWIAYLNLEVAYGT--KTTVEEVFQ 1585

Query: 1627 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLK--QQ 1683
            RA QY D +++H  L  +Y ++ ++K ADEL    + KF   +  +W      L     Q
Sbjct: 1586 RACQYNDDQEIHERLATIYIQSGKHKKADELFQATVAKFGSKNPNLWTNYAHFLHATLNQ 1645

Query: 1684 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLW 1741
             +  +A++ RA  +L        +++   LEF+  NG A+RGR+ FE +L+ +PKR DLW
Sbjct: 1646 PDRARALLPRATQALGEQHTAALMAKFGSLEFRSPNGDAERGRTTFETLLATWPKRFDLW 1705

Query: 1742 SIYLDQEIRL--GDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1798
            +  +D E+     D   +R +FER   +  L  ++    FK++ E+E     + + E V 
Sbjct: 1706 NQLVDLEMAAPGADATAVRDVFERGTKVKGLKAQRAMKWFKRWAEWEGKTDPKGK-ERVM 1764

Query: 1799 QKAMEYVESTLA 1810
             KA E+V +  A
Sbjct: 1765 AKAAEWVTAAKA 1776



 Score =  186 bits (473), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 313/1297 (24%), Positives = 542/1297 (41%), Gaps = 173/1297 (13%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL------ 57
            + ++ G  + G V+ ++  ++ I LP  L G    A A+  ++  +I+   +        
Sbjct: 142  KRLAKGSVVLGQVSAISHHNITIALPNNLSGNVSIA-AISNVVTAKIQQAAEASDDDDSA 200

Query: 58   ----------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQE 107
                      L ++F VGQ V   VL   + +    K  I LSLR      G+S   V  
Sbjct: 201  DENDDDDDIELNSLFEVGQYVRAYVLSTKEGEGSGKKNHIELSLRPEDANSGMSKNDVVA 260

Query: 108  GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSIDR 164
               + A V S++DHGY +  G+ +    GFLP+ ++ +E   + ++PG +   +V+S+  
Sbjct: 261  NATVMAAVTSVQDHGYEMELGVDNKKLKGFLPKKDVGSEVDELRLQPGAVSLCLVKSV-- 318

Query: 165  TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 224
            + K+  L  D + + K      +  +++   PG +V   V S    G++   L +   T 
Sbjct: 319  SGKIAQLCLDSEKLGKADNIATEATTVNTFQPGTVVDVLVTSTTGRGLLGKILGHLPVTA 378

Query: 225  DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRA------- 275
            D+ H        +    Y    +V AR++   P ++   +G++L P+++  +A       
Sbjct: 379  DLIHSGAGPDAVDLDAKYKVGSRVKARVICTFPNAKNPKLGISLLPHIIKLQAKKAGKGG 438

Query: 276  ---PPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 331
               PP +V  +    D+  V +V+  +GL +D+    +S   +V IS V + +V  L + 
Sbjct: 439  QAKPPLNVLPIAVRVDKCIVRKVEPEIGLYVDVGVAGLS--GFVHISKVKDGKVEALYES 496

Query: 332  ---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV-----KGKVIA 383
               +KEGS  R R++G+   +G+     + +  E       DV  G +V     K  V  
Sbjct: 497  SGPFKEGSVHRGRVIGYSAFDGMYLMTFEPTIIEQQFIRLEDVPAGEIVSCTIEKVVVGG 556

Query: 384  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHK 441
                G +V+   G+       H ++  +  P KKF+ G  +  RVL V+ ++  + +T K
Sbjct: 557  QGVSGLVVKVAEGITGYVHETHFADVRLQHPEKKFREGMTVKARVLSVRPRKRQMRLTLK 616

Query: 442  KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
            KTLV S   I+ S+ E        G I+ I  HG  + FY GV+G+ P S++      +P
Sbjct: 617  KTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSEAFIQDP 676

Query: 502  SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVDVVT 556
               + VGQVV   I+   P ++++ +S    P+    D    L     GS+VSG   V+ 
Sbjct: 677  KEHFKVGQVVNVHILEVDPENQKLLVS-CKDPSAFGLDKQAALKALSVGSIVSG--KVIQ 733

Query: 557  PNAVVVYVIAKGYS-KGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NESSN 611
             +   V+V   G + K  +P   L D  + A   +S +K    G     LLVLD NE   
Sbjct: 734  KSDDDVHVELDGSNLKAILPLGQLTD--KSANKSQSALKRIHMGQTLTDLLVLDKNERRR 791

Query: 612  -LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG--FAPR 666
             + LS+K SL+ + +  +L    +     + V G++ +I      VRF G L G  F  R
Sbjct: 792  AITLSSKPSLVEAGKTDKLIRTYADAKVGAEVPGFISSIRPGAVLVRFGGNLVGVMFKTR 851

Query: 667  SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL--------------------SLK 706
                D ++          QS+   I  ++ E  R+ +                    +  
Sbjct: 852  LPVEDQEKEGFG--LRKDQSITVRIRAIDLERTRLVVDPLTAELPSNEVKPKKEKESARP 909

Query: 707  QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 766
            Q+     D +F Q   ++E KI  +  ++ N      VE       ++G+V  S  F   
Sbjct: 910  QAHGPVQDITFGQ---IVEAKIVGIHDTQLN------VE---TADKVQGRVDISQIFD-- 955

Query: 767  VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 826
             S+++  D    ++  +  G TV     ++A  L  +K  R +  S         R  NS
Sbjct: 956  -SWDKIKDPEEPLSQFK-KGDTVR----VRAIGLHDSKDHRFLAFS--------HRSYNS 1001

Query: 827  NRQAQKKKRKREAS-------KDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS 878
              +   K    EA        +DL V  T  A V     N L  ++ P     I    VS
Sbjct: 1002 VLEFTAKASDIEADVLKPLSLEDLEVGSTHVAFVNNASRNGLWANISPVVRGRINAMDVS 1061

Query: 879  DYNTQKFPQ--KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSY 936
            D +T K       F  G ++   V+A+     A R +L L A S++  + +  + K +  
Sbjct: 1062 D-DTSKINDVINNFPIGTALKVRVIAV----DAKRGVLDLSARSDSSAAVTWDSIKPNQV 1116

Query: 937  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 996
              G +V+     +   ++ +K G    G +H+ +++DD  +V  N    +  G  +   +
Sbjct: 1117 LAGCVVK-----VNERQIMVKLGSNVAGHVHLVDMSDDFGDV--NTL-KYDEGDAIQVSV 1168

Query: 997  IA--KSNKPDMKKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1052
            +   KSNK          LS +PS +  + S I    +     V  G  V G+V  V ++
Sbjct: 1169 VEVDKSNK-------RVRLSTRPSRVLNSSSPITDSEITSVKQVVSGSTVRGFVKHVADK 1221

Query: 1053 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
               + +   + A + I  S      L+E++  F + + V G VLS+++    + L L+  
Sbjct: 1222 GVFVLLGGSVSALVKI--SNLSDRFLKEWKEHFQVDQLVKGRVLSVDEGAGQVELSLK-- 1277

Query: 1113 QDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1170
                    VD +   ++T+  I    IV G+I K+      +VV    ++ G  H +E+ 
Sbjct: 1278 -----SSVVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGSDNVSGLCHRSEMA 1332

Query: 1171 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            +  V            D    Y  G  VK KVL + R
Sbjct: 1333 DSPVE-----------DARKLYQAGDVVKAKVLTLDR 1358


>gi|380482965|emb|CCF40910.1| rRNA biogenesis protein RRP5, partial [Colletotrichum higginsianum]
          Length = 1210

 Score =  354 bits (909), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 335/1256 (26%), Positives = 575/1256 (45%), Gaps = 166/1256 (13%)

Query: 612  LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
            L L+ K +L+NS   +  +           G +      G  + F G + GF P S+  +
Sbjct: 43   LRLTLKKTLVNSDAPIVKNYDDAEVGMQTPGTITGFTAAGAQLEFFGDVRGFLPLSQMSE 102

Query: 672  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 731
                D  + + VGQ V  ++LDVN E  R+ +S K               F L+++ A+ 
Sbjct: 103  AYIKDPKEHFRVGQVVSVHVLDVNPEERRMVVSCKDPSA-----------FGLDKQAAL- 150

Query: 732  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 791
                         +   IG ++  KV +  +  V V  EE S +   I    L+    +S
Sbjct: 151  -------------KALKIGDIVSAKVSQKTEDEVFVDLEE-SGLKAIIRTGHLSD---KS 193

Query: 792  GSVIQAA--------------ILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 837
             S  QAA              +LD  +  R V L+ K  F           +A KK    
Sbjct: 194  ASKTQAAWKRINVGNLLSDLVVLDKNERRRAVILTQKPSFA----------EASKKGTLL 243

Query: 838  EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVI 897
             +++D+ V   V A V  +    + +        I   +    + Q+ P       QS+ 
Sbjct: 244  SSAEDVTVGAVVPAYVREIGPFAVYVQFGGSLTGILPKAKLPKDAQEKPAFGMRKHQSI- 302

Query: 898  ATVMALPSSSTAGRLLLLLKAISETETSSSKRA--------KKKSSYDVGSLVQAEITEI 949
              V  + S+    R+++   +  E    + + A        K  +   +G+++ A++  I
Sbjct: 303  -EVKIVSSNPEQNRIIVAPASADEPAPIAPESAVNSVDDSIKTINDIALGTILNAKVMSI 361

Query: 950  KPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARIIAKSNKPDMK- 1006
            K  +L +K      GRI +++  D   N+  ++N     K  + +  R I   +  + + 
Sbjct: 362  KNTQLNVKVADNIQGRIDVSQFFDAWENIKNLKNPLQQVKANEIIRVRAIGIHDSKNYRF 421

Query: 1007 -------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1059
                      L E + K S +   E+    L     + +G     +V         + +S
Sbjct: 422  LPFSHRSTHSLIEFTAKASDIKAKEVE---LLSYDKIEVGSSHVAFVNNHGKNCLWVNLS 478

Query: 1060 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
              ++ ++ I+D + + S     ++ F +G A+   VLS++ +K  L L  R    G S+ 
Sbjct: 479  PTVRGRISIMDVSDDLSHAGNLEKYFPVGSALKVRVLSVDADKGHLDLSSR-SSTGSSEV 537

Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
            T D    NM         + GR++K+      ++V++   + G VH  +L   C      
Sbjct: 538  TWDSLKKNM--------TLPGRVTKV--NDRSVMVKLSDSVSGPVHLVDL---C-----D 579

Query: 1180 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1239
             YDE        Y +G+ ++  V+E+ ++ +    + LS R S    S++  +D      
Sbjct: 580  NYDEAN---TLKYTKGEIIRVSVVEVDKSNK---RLRLSTRPSRILSSTSPVAD------ 627

Query: 1240 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1299
               + + K+  +S   I++G+VKNVT KG F+ L   + A V + NLSD Y++  +  F 
Sbjct: 628  ---REITKLPQISSGDIIRGFVKNVTDKGVFVQLGGTVSAYVKIGNLSDRYIKDWKGNFQ 684

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            + +LV GRV++V+    +VE++LK S         +    ++  G IV G++++VE +G 
Sbjct: 685  VDQLVKGRVINVDTAINQVELSLKASVVENDYTPPVT-YKDIKEGQIVTGKVRKVEEFGA 743

Query: 1360 FITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
            FI ++N+ N+ GLCH SE++E  V++   +Y  G+ VK KIL VD E++RI+  +K S+F
Sbjct: 744  FIVVDNSHNVSGLCHRSEMAEKPVEDARRLYSEGDVVKAKILSVDDERKRITFSLKPSHF 803

Query: 1419 KNDAD--NLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG-SLVLAQIE 1475
              D+D  +++  +E  SDE                      D D+E  DGG  L ++  +
Sbjct: 804  DEDSDMEDVEGGAELASDE----------------------DSDVEMGDGGVQLTISGTD 841

Query: 1476 S----------RASVPPLEVNLDDEQPDMDNGISQNQGHTD-EAKTIDEKNNRHAKK--- 1521
            +                 + +  + +     G   + G  D      DE +     K   
Sbjct: 842  NFDDSDEDEDDEEEEEEEDDSDVEMEDKAATGKGLSAGKYDWTGDAFDESDGESTSKTKK 901

Query: 1522 ----KEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADV 1577
                ++KE+++  I+      L+   P+T  ++ERL+   P+SS +WI+YMA  + ++++
Sbjct: 902  PTATEKKEKKQSGIQVDRTADLDAHGPQTATDYERLLLGEPDSSQLWIQYMALQMKVSEL 961

Query: 1578 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1637
             KAR IAERA++TINIRE+ EKLN+W+AY NLE  YG   + +  +VF+RA QY D ++V
Sbjct: 962  AKAREIAERAIKTINIREQMEKLNVWIAYLNLEVAYGT--KASTEEVFKRACQYNDEQEV 1019

Query: 1638 HLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRL--LKQQQEGVQAVVQRA 1694
            H  L  +Y ++ + K AD++   ++ KFK  S KVW      L     + +  +A++ RA
Sbjct: 1020 HERLASIYIQSGKLKQADDVFQSLVAKFKSKSPKVWENYAHFLHVTMNEPDRARALLPRA 1079

Query: 1695 LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1752
              +L      + ++    LEFK  NG A+RGR+ FE IL+ +PKR DLW+   D EI   
Sbjct: 1080 TQALEERHTAQLMASFGALEFKSPNGDAERGRTTFETILATWPKRFDLWNQLADLEISAA 1139

Query: 1753 DVD--LIRGLFER-AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            + D   IR +FER A +  L PKK    FK++ E+E+ +  + R + V  KA E+V
Sbjct: 1140 EPDATAIRDVFERGAKAKGLKPKKAMKWFKRWAEWEQKLSPKGR-DKVMAKAQEWV 1194



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 149/321 (46%), Gaps = 14/321 (4%)

Query: 396 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILS 453
           G+       H+++ ++  P KKF+ G  +  RVL V+ ++  + +T KKTLV S   I+ 
Sbjct: 1   GITGYVHESHLADVKLQHPEKKFREGITVKARVLSVRPRKRQLRLTLKKTLVNSDAPIVK 60

Query: 454 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 513
           +Y +A   + T G IT     G  + F+  V+GF P S++      +P   + VGQVV  
Sbjct: 61  NYDDAEVGMQTPGTITGFTAAGAQLEFFGDVRGFLPLSQMSEAYIKDPKEHFRVGQVVSV 120

Query: 514 RIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKG 568
            ++   P  RR+ +S    P+    D       +K+G +VS  V   T + V V +   G
Sbjct: 121 HVLDVNPEERRMVVS-CKDPSAFGLDKQAALKALKIGDIVSAKVSQKTEDEVFVDLEESG 179

Query: 569 YSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLINSAQ 625
             K  I T HL+D     T      I  G     L+VLD NE    ++L+ K S   +++
Sbjct: 180 L-KAIIRTGHLSDKSASKTQAAWKRINVGNLLSDLVVLDKNERRRAVILTQKPSFAEASK 238

Query: 626 Q--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 683
           +  L S A  +   +VV  YV  I     +V+F G LTG  P++K     +   +     
Sbjct: 239 KGTLLSSAEDVTVGAVVPAYVREIGPFAVYVQFGGSLTGILPKAKLPKDAQEKPAFGMRK 298

Query: 684 GQSVRSNILDVNSETGRITLS 704
            QS+   I+  N E  RI ++
Sbjct: 299 HQSIEVKIVSSNPEQNRIIVA 319



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +  G +++G V  V   G  VQ  G V A   + ++S+  I      F+V   +  RV+ 
Sbjct: 636 ISSGDIIRGFVKNVTDKGVFVQLGGTVSAYVKIGNLSDRYIKDWKGNFQVDQLVKGRVIN 695

Query: 431 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQG 486
           V +   ++ ++ K ++V++      +Y +  +  I  G + K+E+ G F+   N   V G
Sbjct: 696 VDTAINQVELSLKASVVENDYTPPVTYKDIKEGQIVTGKVRKVEEFGAFIVVDNSHNVSG 755

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
              RSE+   P  +   +Y  G VVK +I+S     +RI  +F +KP+   ED
Sbjct: 756 LCHRSEMAEKPVEDARRLYSEGDVVKAKILSVDDERKRI--TFSLKPSHFDED 806



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 313 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHS 369
            YV  S +A+ +++  EKK++EG  V+ R+L  R  +      LK +       +V  + 
Sbjct: 4   GYVHESHLADVKLQHPEKKFREGITVKARVLSVRPRKRQLRLTLKKTLVNSDAPIVKNYD 63

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           D + GM   G +    + GA ++F G V+   PL  MSE  I  P + F+VG  +   VL
Sbjct: 64  DAEVGMQTPGTITGFTAAGAQLEFFGDVRGFLPLSQMSEAYIKDPKEHFRVGQVVSVHVL 123

Query: 430 GV--KSKRITVTHK 441
            V  + +R+ V+ K
Sbjct: 124 DVNPEERRMVVSCK 137



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 20/265 (7%)

Query: 189 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 248
           ++ D L   M +  RV  + +  VM+      +G V +  L + +   N    Y + + +
Sbjct: 537 VTWDSLKKNMTLPGRVTKVNDRSVMVKLSDSVSGPVHLVDLCDNYDEAN-TLKYTKGEII 595

Query: 249 NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLG 299
              ++ VD +++ + L+  P  + +   P           +  GDI         D+G+ 
Sbjct: 596 RVSVVEVDKSNKRLRLSTRPSRILSSTSPVADREITKLPQISSGDIIRGFVKNVTDKGVF 655

Query: 300 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 359
           + L       +  AYV I ++++  ++  +  ++    V+ R++            LKAS
Sbjct: 656 VQLG-----GTVSAYVKIGNLSDRYIKDWKGNFQVDQLVKGRVINVDTAINQVELSLKAS 710

Query: 360 AFEGLV---FTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKP 414
             E       T+ D+K G +V GKV  V+ FGA  +V     V  LC    M+E  +   
Sbjct: 711 VVENDYTPPVTYKDIKEGQIVTGKVRKVEEFGAFIVVDNSHNVSGLCHRSEMAEKPVEDA 770

Query: 415 GKKFKVGAELVFRVLGVKSKRITVT 439
            + +  G  +  ++L V  +R  +T
Sbjct: 771 RRLYSEGDVVKAKILSVDDERKRIT 795



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 136/330 (41%), Gaps = 38/330 (11%)

Query: 248 VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 307
           V AR+L V P  R + LTL   L+++ AP     +   YD ++V     G          
Sbjct: 29  VKARVLSVRPRKRQLRLTLKKTLVNSDAP-----IVKNYDDAEVGMQTPGTITGFTAAGA 83

Query: 308 PV----STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL---------ATG 354
            +        ++ +S ++E  ++  ++ ++ G  V V +L     E           A G
Sbjct: 84  QLEFFGDVRGFLPLSQMSEAYIKDPKEHFRVGQVVSVHVLDVNPEERRMVVSCKDPSAFG 143

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVK 413
           + K +A + L       K G +V  KV         V     G+KA+    H+S+    K
Sbjct: 144 LDKQAALKAL-------KIGDIVSAKVSQKTEDEVFVDLEESGLKAIIRTGHLSDKSASK 196

Query: 414 ---PGKKFKVG---AELVFRVLGVKSKRITVTHKKTLVKS--KLAILSSYAEATDRLITH 465
                K+  VG   ++LV      + + + +T K +  ++  K  +LSS  + T   +  
Sbjct: 197 TQAAWKRINVGNLLSDLVVLDKNERRRAVILTQKPSFAEASKKGTLLSSAEDVTVGAVVP 256

Query: 466 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 525
            ++ +I     +V+F   + G  P+++L  D   +P+      Q ++ +I+SS P   RI
Sbjct: 257 AYVREIGPFAVYVQFGGSLTGILPKAKLPKDAQEKPAFGMRKHQSIEVKIVSSNPEQNRI 316

Query: 526 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVV 555
               ++ P    E   +   S V+ V D +
Sbjct: 317 ----IVAPASADEPAPIAPESAVNSVDDSI 342



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 123/555 (22%), Positives = 228/555 (41%), Gaps = 87/555 (15%)

Query: 62  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL---YKGL---SLETVQEGMVLTAYV 115
            +VG L+S +V+ LD +++   +R + L+ + S      KG    S E V  G V+ AYV
Sbjct: 204 INVGNLLSDLVV-LDKNER---RRAVILTQKPSFAEASKKGTLLSSAEDVTVGAVVPAYV 259

Query: 116 KSIEDHGYILHFGLPSFTGFLPRNNLAENS------GIDVKPGLLLQGVVRSIDRTRKVV 169
           + I      + FG  S TG LP+  L +++      G+     + ++ V  + ++ R +V
Sbjct: 260 REIGPFAVYVQFG-GSLTGILPKAKLPKDAQEKPAFGMRKHQSIEVKIVSSNPEQNRIIV 318

Query: 170 YLSSD-------PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 222
             +S        P++    V   +K  +I+ +  G +++ +V SI    + +       G
Sbjct: 319 APASADEPAPIAPESAVNSVDDSIK--TINDIALGTILNAKVMSIKNTQLNVKVADNIQG 376

Query: 223 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL------TLNPY------- 269
            +D+    + +   N KN  N  ++V A  +      RA+G+         P+       
Sbjct: 377 RIDVSQFFDAW--ENIKNLKNPLQQVKANEII---RVRAIGIHDSKNYRFLPFSHRSTHS 431

Query: 270 LLHNRAPPSHVKVGDI----YDQ-----SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 320
           L+   A  S +K  ++    YD+     S V  V+      L +  +P +    ++I DV
Sbjct: 432 LIEFTAKASDIKAKEVELLSYDKIEVGSSHVAFVNNHGKNCLWVNLSP-TVRGRISIMDV 490

Query: 321 AEE--EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 378
           +++      LEK +  GS ++VR+L     +G    +   S+      T   +K  M + 
Sbjct: 491 SDDLSHAGNLEKYFPVGSALKVRVLSVDADKG-HLDLSSRSSTGSSEVTWDSLKKNMTLP 549

Query: 379 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 436
           G+V  V+    +V+    V     L  + +        K+  G  +   V+ V   +KR+
Sbjct: 550 GRVTKVNDRSVMVKLSDSVSGPVHLVDLCDNYDEANTLKYTKGEIIRVSVVEVDKSNKRL 609

Query: 437 TVTHKKTLVKSKLAILSSYAEATDRLIT-----------HGWITKIEKHGCFVRFYNGVQ 485
            ++ + +       ILSS +   DR IT            G++  +   G FV+    V 
Sbjct: 610 RLSTRPS------RILSSTSPVADREITKLPQISSGDIIRGFVKNVTDKGVFVQLGGTVS 663

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---- 541
            +     L      +    + V Q+VK R+++   A  ++ LS       V E+D     
Sbjct: 664 AYVKIGNLSDRYIKDWKGNFQVDQLVKGRVINVDTAINQVELSLK---ASVVENDYTPPV 720

Query: 542 ----VKLGSLVSGVV 552
               +K G +V+G V
Sbjct: 721 TYKDIKEGQIVTGKV 735


>gi|402086176|gb|EJT81074.1| hypothetical protein GGTG_01061 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1795

 Score =  353 bits (906), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 387/1453 (26%), Positives = 672/1453 (46%), Gaps = 154/1453 (10%)

Query: 419  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCF 477
            K+G  L+  V G+K K + V  K+      L IL S +     ++    + K+E   G F
Sbjct: 423  KLGISLLPHVTGLKPKLVAVQGKED--AHPLTILPSSS-----MVEECVVRKVEPGIGLF 475

Query: 478  VRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SF 529
            V     GV GF   S +    +D   E S  Y  G   + R++  S++     ++L  S 
Sbjct: 476  VDVGVEGVPGFVHISRVKDGKVDALYESSGPYKTGSTHRSRVIGYSALDGVFLVSLEKSV 535

Query: 530  MMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLE 584
            + +P    ED  V +G +V+  ++  VV  + V  ++  +A+G + G +P  HLAD  L+
Sbjct: 536  LERPYLRIED--VPVGDVVTVTIEKLVVKEDGVSGLIVRLAEGIT-GFVPEMHLADVRLQ 592

Query: 585  HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 643
            H    +   K G +   ++L  D+    L L+ K +L+NS  +       +       G 
Sbjct: 593  HP---EKKFKEGLKVKARVLSADSAKHQLRLTLKKTLLNSETKPIKAFDEVSVGQQFPGT 649

Query: 644  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703
            +  I+  G FV+F G L GF P S+  +    D ++ + VGQ V  ++++V+    R+ +
Sbjct: 650  IVKIMPIGAFVQFYGALRGFMPISEMSEAYIRDPNEHFRVGQVVNVHVVEVDPAAHRLIV 709

Query: 704  SLKQSCCSSTDASFMQEHFLLEE-KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 762
            S     C    A  M++   L+  K+  L S+K        +   ++GS+++        
Sbjct: 710  S-----CKDPAAFGMEKRLALQALKLGQLVSAKVAQKSEDEISLELVGSLLKA------- 757

Query: 763  FGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA-AILDVAKAERLVDLSLKTVFIDRF 821
               V+     +D     + +Q A   +  G  +    +L+  +  R V LSLK   +   
Sbjct: 758  ---VLRCSHMTDKSA--SKNQSALNKIRVGQTLDGLVVLEKDEDRRAVVLSLKPSLV--- 809

Query: 822  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIG 873
                   +A K  R   A +D  V   V   +  +    + +         LP    + G
Sbjct: 810  -------KASKDGRLLTALQDAKVGSLVQGFIRNITATAVFVQFAGNLTALLPRSLMTAG 862

Query: 874  YASVSDYNTQKFPQKQFLNGQSVIAT--VMALPSSSTAGRLLLLLKAISETETSSSKRAK 931
              +   +   +  Q   +   SV     V+A+P +    +      A      +      
Sbjct: 863  MQAQEGFGL-RLSQPILVKVHSVDDKRLVVAMPDAEPPSKTDKPSSASKPIANAIDPTIN 921

Query: 932  KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIG 989
                  VG + +A I+ +K  +L +  G    GR+ ++EV D  D+    ++    F   
Sbjct: 922  STDDITVGKITKARISSVKKTQLNVSLGDNIQGRVDVSEVFDSWDEIEDPKDPLQKFAAN 981

Query: 990  QTVTARIIAKSNKPDMKKSFL----------WELSIKPSMLTVSEIGSKLLFEECDVSIG 1039
            Q +  R+I   +  + +  FL           EL+ KPS L  +  G K L  E D+   
Sbjct: 982  QIIDVRVIGVHDARNYR--FLPFSHRTAHSVLELTAKPSSLRETARGYKPLALE-DIKPD 1038

Query: 1040 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1099
                 +V   D     + +S  ++ ++   + + + S  ++ ++ F +G A+   V+++ 
Sbjct: 1039 SNWLSFVNNNDGNCLWVNLSPAVRGRIRAAEVSDDSSLSKDLRQHFPVGSALRTRVVTVK 1098

Query: 1100 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1159
             E   L L  R  +        ++  D   T +H       R++K+      +++QI   
Sbjct: 1099 SENGHLDLSARSARPNERLTWDELEKD---TVMH------ARVTKVNDR--QVLIQISDS 1147

Query: 1160 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1219
            + G VH  +L +          D  Q +PL  Y +   ++  V+ + R+ +    V LS 
Sbjct: 1148 VSGPVHMVDLSD----------DYDQANPLR-YSKNDIIRVAVVSVDRSNK---KVRLSA 1193

Query: 1220 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1279
            R          S  L++ +    + +  +  +    I++G+VKNV+ KG F+ L   +DA
Sbjct: 1194 R---------ESRVLNSALPVKDREITAVSQIEVGSIIRGFVKNVSDKGLFVTLG-GVDA 1243

Query: 1280 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1339
             V +++LSD Y++  +  F + +LV GRVL+V P + +V+++LK S +       +   +
Sbjct: 1244 FVRIADLSDAYLKEWKDHFQVDQLVKGRVLAVNPATGQVQMSLKAS-AVDEDYKPLPGFA 1302

Query: 1340 NLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1398
            +   G +V G++++V  +G FI ++ + N+ GLCH +E+++  V +   +Y+ G+ VK  
Sbjct: 1303 DFKKGQVVTGKVRKVADFGAFILVDKSANVSGLCHRTEMADKPVKDATRLYKEGDSVKAI 1362

Query: 1399 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQD 1458
            +L VD  KR+I+LG+K SYF++   +  M  +++ +E +    S +  S         +D
Sbjct: 1363 VLGVDAGKRKITLGLKPSYFEDADSDEDMDGDDDDEEDLASDDSGDSGS---------ED 1413

Query: 1459 MDMESED------GGSLVLAQIESRASVPPLEVNLDDEQ-----PDMD-NGISQNQGHTD 1506
             DME  D      GG  V    +            D E      P +D  G   + G  D
Sbjct: 1414 EDMEDADSVVLFTGGEGVSLDEDGSDDEGDDTSMADAEDGDAPLPGLDAGGFDWSGGGLD 1473

Query: 1507 EAKTIDEKNNRHA-KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1565
            EA  ++E ++  A  KK K+ ++ E+       L+   P+   +FERL+   PNSS +WI
Sbjct: 1474 EA--VNEADDSGAVAKKSKKRKKVEVEVDRTGDLDAKGPQAASDFERLLLGQPNSSSLWI 1531

Query: 1566 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1625
             Y+AF + ++++ KAR IAERA+ TIN+REE EKLN+W+AY NLE  YG   +E + +VF
Sbjct: 1532 AYVAFQMQVSELSKAREIAERAINTINVREETEKLNVWIAYLNLEVAYGT--DETLNEVF 1589

Query: 1626 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQ 1682
            +RA QY D ++V+  L  +  ++ +N   DEL   M+KKF   S  VWL     L  L  
Sbjct: 1590 RRACQYNDEQEVYERLTSICIQSGKNDKVDELFQTMVKKFGSKSPDVWLNYAHFLYTLGG 1649

Query: 1683 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDL 1740
              E  +A++ RAL SL    H+   S+ A LEF+   G  +RGR++FEG+L+ YPKR DL
Sbjct: 1650 SAERGRALLPRALKSLDSRAHLTLTSKFAALEFRCAGGEPERGRTVFEGLLATYPKRFDL 1709

Query: 1741 WSIYLDQEIRLGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYV 1797
            W+  LD E    D D  ++R +FER   +  L P++ K  F+++ ++E++ G+ +  E V
Sbjct: 1710 WNQLLDLETSAADKDANVVRDVFERGTKVKGLKPRQAKAWFQRWAKWEEANGDAKSREKV 1769

Query: 1798 KQKAMEYVESTLA 1810
              KA  +  S  A
Sbjct: 1770 TAKAKGWASSAEA 1782



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 290/1253 (23%), Positives = 527/1253 (42%), Gaps = 123/1253 (9%)

Query: 9    GMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDN--------- 56
            G  + G V+++   +L + LP  L G   +   ++ L   L+++   +E+          
Sbjct: 150  GSLVLGQVSKIGPLELELSLPNNLVGHVPITAVSEHLTKKLESDAATSEEEQDDADDGGD 209

Query: 57   -LLPTIFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLRLSLLYKGLSLETVQEGMVLT 112
              L  +F VGQ V   V    DD        KR+I LSL   L   GL    + E   + 
Sbjct: 210  SDLTALFSVGQFVRAYVTSTVDDSGSASAKAKRRIELSLYPELANLGLGESDIVENSTVA 269

Query: 113  AYVKSIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVV 169
              + S+EDHGY++  G+      GFLP+  +  N     + PG +   +V     +  V 
Sbjct: 270  GSILSVEDHGYVVSLGIQDSQLRGFLPKKEVDSNIPSTRLVPGCVHMFLVSGRRASGTVS 329

Query: 170  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 229
             LS     +           +I+  +PG  V   V  +    +    + +   T D+ H 
Sbjct: 330  RLSLLSSNLGNLKLYPASAKTINTFLPGTAVEVLVSDVSSRSLAGKVIGHLDVTADVIHS 389

Query: 230  QNTFPTTNWKNDYNQHKKVNARILFVDPT--SRAVGLTLNPYLL------------HNRA 275
                   + +  Y    K+ ARI+   P   S  +G++L P++              +  
Sbjct: 390  GCGPDGLDLEKTYKVGSKIKARIICTFPAADSPKLGISLLPHVTGLKPKLVAVQGKEDAH 449

Query: 276  PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---Y 332
            P + +    + ++  V +V+ G+GL +D+    V  P +V IS V + +V  L +    Y
Sbjct: 450  PLTILPSSSMVEECVVRKVEPGIGLFVDVGVEGV--PGFVHISRVKDGKVDALYESSGPY 507

Query: 333  KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV----KGKVIAVDSF- 387
            K GS  R R++G+  L+G+    L+ S  E       DV  G VV    +  V+  D   
Sbjct: 508  KTGSTHRSRVIGYSALDGVFLVSLEKSVLERPYLRIEDVPVGDVVTVTIEKLVVKEDGVS 567

Query: 388  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV 445
            G IV+   G+    P  H+++  +  P KKFK G ++  RVL   S +  + +T KKTL+
Sbjct: 568  GLIVRLAEGITGFVPEMHLADVRLQHPEKKFKEGLKVKARVLSADSAKHQLRLTLKKTLL 627

Query: 446  KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 505
             S+   + ++ E +      G I KI   G FV+FY  ++GF P SE+      +P+  +
Sbjct: 628  NSETKPIKAFDEVSVGQQFPGTIVKIMPIGAFVQFYGALRGFMPISEMSEAYIRDPNEHF 687

Query: 506  HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVV 561
             VGQVV   ++   PA+ R+ +S         E  L    +KLG LVS  V   + + + 
Sbjct: 688  RVGQVVNVHVVEVDPAAHRLIVSCKDPAAFGMEKRLALQALKLGQLVSAKVAQKSEDEIS 747

Query: 562  VYVIAKGYSKGTIPTEHLADHLEHATVMKSV---IKPGYEFDQLLVL--DNESSNLLLSA 616
            + ++     K  +   H+ D  + A+  +S    I+ G   D L+VL  D +   ++LS 
Sbjct: 748  LELVGS-LLKAVLRCSHMTD--KSASKNQSALNKIRVGQTLDGLVVLEKDEDRRAVVLSL 804

Query: 617  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 674
            K SL+ +++  +L +        S+V G++ NI  T  FV+F G LT   PRS    G +
Sbjct: 805  KPSLVKASKDGRLLTALQDAKVGSLVQGFIRNITATAVFVQFAGNLTALLPRSLMTAGMQ 864

Query: 675  ADLSKTYYVGQSVRSNILDVNSETGRITLSL----------KQSCCSSTDASFMQEHFLL 724
            A       + Q +   +  V+ +  R+ +++          K S  S   A+ +      
Sbjct: 865  AQEGFGLRLSQPILVKVHSVDDK--RLVVAMPDAEPPSKTDKPSSASKPIANAIDPTINS 922

Query: 725  EEKIAMLQSSKHNGSELKWVE-GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 783
             + I + + +K   S +K  +    +G  I+G+V  S  F      E+  D       +Q
Sbjct: 923  TDDITVGKITKARISSVKKTQLNVSLGDNIQGRVDVSEVFDSWDEIEDPKDPLQKFAANQ 982

Query: 784  LAGATVESGSVIQAAILDV--AKAERLVDLSLKTVF-IDRFREANSNRQAQKKKRKREAS 840
                      +I   ++ V  A+  R +  S +T   +       S+ +   +  K  A 
Sbjct: 983  ----------IIDVRVIGVHDARNYRFLPFSHRTAHSVLELTAKPSSLRETARGYKPLAL 1032

Query: 841  KDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNT-QKFPQKQFLNGQSVIA 898
            +D+       + V     N L ++L P     I  A VSD ++  K  ++ F  G ++  
Sbjct: 1033 EDIKPDSNWLSFVNNNDGNCLWVNLSPAVRGRIRAAEVSDDSSLSKDLRQHFPVGSALRT 1092

Query: 899  TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGSLVQAEITEIKPLELR 955
             V+ + S +  G L L         ++ S R  ++ ++D     +++ A +T++   ++ 
Sbjct: 1093 RVVTVKSEN--GHLDL---------SARSARPNERLTWDELEKDTVMHARVTKVNDRQVL 1141

Query: 956  LKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSI 1015
            ++      G +H+ +++DD        +S   I + V    + +SNK          LS 
Sbjct: 1142 IQISDSVSGPVHMVDLSDDYDQANPLRYSKNDIIR-VAVVSVDRSNKK-------VRLSA 1193

Query: 1016 KPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1073
            + S +  S   +  + +     + +G  + G+V  V ++   +T+        F+  +  
Sbjct: 1194 RESRVLNSALPVKDREITAVSQIEVGSIIRGFVKNVSDKGLFVTLG---GVDAFVRIADL 1250

Query: 1074 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF-- 1131
              + L+E++  F + + V G VL++N     +++ L+          VD     +  F  
Sbjct: 1251 SDAYLKEWKDHFQVDQLVKGRVLAVNPATGQVQMSLKA-------SAVDEDYKPLPGFAD 1303

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1184
              +G +V G++ K+      ++V    ++ G  H TE+ +  V D    Y EG
Sbjct: 1304 FKKGQVVTGKVRKVADFGAFILVDKSANVSGLCHRTEMADKPVKDATRLYKEG 1356


>gi|444318932|ref|XP_004180123.1| hypothetical protein TBLA_0D00960 [Tetrapisispora blattae CBS 6284]
 gi|387513165|emb|CCH60604.1| hypothetical protein TBLA_0D00960 [Tetrapisispora blattae CBS 6284]
          Length = 1513

 Score =  353 bits (905), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 270/879 (30%), Positives = 452/879 (51%), Gaps = 109/879 (12%)

Query: 961  GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP-----DMKKSFLWELSI 1015
               G I++  ++D +           KIG  +T  +I K ++       MKKS + +   
Sbjct: 701  NLRGVIYVGHLSDSRIEQNRATIKKIKIGSKLTGVVIDKDDRTRVFNLSMKKSLIDDAKN 760

Query: 1016 KPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP 1075
            K   ++ S+I S        +     + GY+  + N    +  +        +L S    
Sbjct: 761  KTLPISFSDIIS--------LDKTTPLHGYIKSISNTGIFVAFNGKFVG--LVLPSYAVE 810

Query: 1076 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT--------VDISNDN 1127
            S   +  + F++ ++VT ++L  ++E +   L L+   +  +D+T        +  S +N
Sbjct: 811  SRDVDINKSFYVNQSVTSYLLRTDEENERFLLTLK---NSKADQTSGAANASAISQSTEN 867

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
            + T I  GD +  RI K+ SG   +++ +G  + G V F       ++D L+ Y      
Sbjct: 868  LDT-IKVGDKIPARIVKV-SG-KHVILDLGNKITG-VSF-------ITDALNDY------ 910

Query: 1188 PLSGYDEGQ-----FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1242
             +S  DE Q      +   V+ I+   +    V LSLR+                 +   
Sbjct: 911  SVSLSDEYQNKLNKTIDATVISINTKAK---KVNLSLRT-----------------NEAK 950

Query: 1243 KHL-EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            +HL E   D+    +V G +KN+   G FI LS  +DA V +S LSD Y++  +K +   
Sbjct: 951  QHLIESHNDIKQGDVVHGLIKNINDSGVFIYLSTNIDAFVPVSKLSDSYLKDWKKFYNPL 1010

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            + V G+V+S E    R+ VTL+ S+        + + S++ VG+I  G +K V  +G+F+
Sbjct: 1011 QHVIGKVVSCES-DDRILVTLRESEV-NGDLKILKDYSSIEVGEIFNGNVKNVTDFGVFV 1068

Query: 1362 TIENT-NLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
             ++NT N+ GL H SE+++D + D++  ++ AG++VK  +L+V+ EK+++SLG+K+SYF 
Sbjct: 1069 KLDNTVNVTGLAHKSEIADDKIPDDLSALFGAGDRVKAIVLRVNAEKKQVSLGLKASYFS 1128

Query: 1420 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV-AVQDMDMESEDGGSLVLAQIESRA 1478
            ND  N      EES+E   E  +  ++  ++N+    V + D ES++   +     E+  
Sbjct: 1129 NDNYN------EESNEKPMEENTEEKTETIQNADADEVIEFDNESDEDVEME----EAEN 1178

Query: 1479 SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEERE-------QEI 1531
            S  P+  N          G+S + G    A  +D+ N+    + + +  E       ++ 
Sbjct: 1179 SKIPISTN----------GLSLSTGFDWTASILDQTNDTEESEDDGDFTEIKKKSKSKKN 1228

Query: 1532 RAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1588
               E++ ++ +  RTP+   +FERL+  +PNSS VW+ YMAF L ++++EKAR IAERAL
Sbjct: 1229 HIVEDKTIDINT-RTPESVADFERLIIGNPNSSVVWMNYMAFQLQLSEIEKAREIAERAL 1287

Query: 1589 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1648
            + IN REE EKLNIW+A  NLEN +G   EE +  VF+RA QY D   +H  L+ +Y+ +
Sbjct: 1288 KIINFREEAEKLNIWIAMLNLENTFG--TEETLEDVFKRACQYMDSYTIHNKLISIYQMS 1345

Query: 1649 EQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKF 1706
            E+   A EL     KKF      +W      LL Q   +  +A++  AL SLP+  HI  
Sbjct: 1346 EKLDRAAELFKTTAKKFGSEKLSIWTSWGDFLLAQNNAQEARAILANALKSLPKRNHIDI 1405

Query: 1707 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766
            + + A LEF  G A+RGRS+FEG++++ PKR D+W++YLDQEI++ +   +  LFER  +
Sbjct: 1406 VKKFAQLEFAKGDAERGRSLFEGLIADAPKRIDIWNVYLDQEIKINEKKKVEDLFERVFT 1465

Query: 1767 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
              +  K+ KF F K+L +E+   +++   YVK KA E+V
Sbjct: 1466 RKITRKQAKFFFNKWLVFEEGQKDDKMTSYVKAKATEFV 1504



 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 256/1079 (23%), Positives = 463/1079 (42%), Gaps = 167/1079 (15%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN------------ 48
            +N+  G  L G +    +KDL +    G+ G   +   +D +  IL++            
Sbjct: 113  KNLKVGSILLGQITSTTKKDLCVTFTDGISGYVPITHISDHITHILEDIDDDMSDEEEKD 172

Query: 49   ----EIEANEDNLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYK 98
                E   ++ + LP +   F +GQ + C V++   LD   K+  K++I LS+  S++  
Sbjct: 173  ECEKEENTHDFDELPNLNKYFKIGQWLRCSVIKNTALDAVSKKHHKKRIELSIEPSVV-N 231

Query: 99   GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQG 157
              S E +++   +   VKS+EDHG  L  GL + TGF+ + ++ +   +   PG + L  
Sbjct: 232  PFSAEDLEKHSTVQCSVKSLEDHGATLDLGLENVTGFISKKDVPDFETL--LPGSVFLAN 289

Query: 158  VVRSIDRTRKV-VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 216
            + +   R+  V    S+    VS          SID +VPG MV      I  NG+    
Sbjct: 290  IYKKSGRSIIVNTNFSAKNSKVSHIS-------SIDAVVPGQMVDFLCDDISSNGISGKI 342

Query: 217  LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP 276
                +  + I HL+ TF     K  Y+    +  RI+                LL+    
Sbjct: 343  FGLVSSFIGISHLR-TFTEEELKETYSAGSNIKCRII--------------ASLLNKN-- 385

Query: 277  PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-----------STPAYVTISDVAEEEV 325
               V +    DQ  +V +D  +     I + P+           S   +V ++    E++
Sbjct: 386  DERVLIVSTLDQ--IVSLDNNIAQTEAIEAFPIGYTFDSASFLGSDSDFVYLA--LNEDL 441

Query: 326  RKLEKKYKEGSC-----VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG- 379
                 + K G       ++ R++G+  ++ +       +A +      +D+  G +V G 
Sbjct: 442  FGAVHRSKLGDIHISGDIQARVIGYNTIDKIYQLSTDPNALKLKYIRAADIPNGELVTGC 501

Query: 380  KVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRIT 437
            ++I V S G  ++ F G   A  P  H+S+ ++  P +KFK+G+++  R+L V K   I 
Sbjct: 502  EIINVSSDGIELKIFNGQFSAFVPPLHISDVKLSYPERKFKIGSKIKGRILEVTKRGHII 561

Query: 438  VTHKKTLVKSKLAILSSYAEA----TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
            +T KK+LV  +  I+  Y  A         T   +   + +GC + F+ G++GF P SE+
Sbjct: 562  MTLKKSLVNDENKIVDDYVSAKQLQNKNEKTVATVESFKPNGCLISFFGGLRGFLPNSEI 621

Query: 494  GLDPGCEPSSMYHVGQVV----------KCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
                  +P     +GQ V          + R+++S  AS   +     +  +++ + LV 
Sbjct: 622  SEAFVRKPEQHLRLGQTVIIKILDVDEKRFRVIASCKASNEDS-----QAQKLAIEKLVL 676

Query: 544  LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFD 600
              S++   V   T ++VVV   A    +G I   HL+D       AT+ K  IK G +  
Sbjct: 677  GRSIIEVNVVEKTKDSVVVED-ADSNLRGVIYVGHLSDSRIEQNRATIKK--IKIGSKLT 733

Query: 601  QLLVLDNESSNLL-LSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFV 654
             +++  ++ + +  LS K SLI+ A+   LP   SD   +   + +HGY+ +I  TG FV
Sbjct: 734  GVVIDKDDRTRVFNLSMKKSLIDDAKNKTLPISFSDIISLDKTTPLHGYIKSISNTGIFV 793

Query: 655  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
             F G+  G    S AV+ +  D++K++YV QSV S +L  + E  R  L+LK S    T 
Sbjct: 794  AFNGKFVGLVLPSYAVESRDVDINKSFYVNQSVTSYLLRTDEENERFLLTLKNSKADQTS 853

Query: 715  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
             +            + +  S  N   +K      +G  I  ++ + +   V++       
Sbjct: 854  GA---------ANASAISQSTENLDTIK------VGDKIPARIVKVSGKHVILDLGNKIT 898

Query: 775  VYGFITHHQLAGATV--------ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 826
               FIT   L   +V        +    I A ++ +    + V+LSL+T           
Sbjct: 899  GVSFIT-DALNDYSVSLSDEYQNKLNKTIDATVISINTKAKKVNLSLRT----------- 946

Query: 827  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN----YLVLSLPEYNHSIGYASVSDYNT 882
                + K+   E+  D+     V+ +++ + ++    YL  ++  +   +  + +SD   
Sbjct: 947  ---NEAKQHLIESHNDIKQGDVVHGLIKNINDSGVFIYLSTNIDAF---VPVSKLSDSYL 1000

Query: 883  QKFPQKQFLNG-QSVIATVMALPSSSTAGRLLLLLKAISETETSSS-KRAKKKSSYDVGS 940
            + +  K+F N  Q VI  V++  S     R+L+ L+   E+E +   K  K  SS +VG 
Sbjct: 1001 KDW--KKFYNPLQHVIGKVVSCESDD---RILVTLR---ESEVNGDLKILKDYSSIEVGE 1052

Query: 941  LVQAEITEIKPLELRLKFG--IGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
            +    +  +    + +K    +   G  H +E+ DDK  + ++L + F  G  V A ++
Sbjct: 1053 IFNGNVKNVTDFGVFVKLDNTVNVTGLAHKSEIADDK--IPDDLSALFGAGDRVKAIVL 1109



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 122/564 (21%), Positives = 226/564 (40%), Gaps = 91/564 (16%)

Query: 318  SDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS---------AFEGLVFTH 368
            S+++E  VRK E+  + G  V ++IL             KAS         A E LV   
Sbjct: 619  SEISEAFVRKPEQHLRLGQTVIIKILDVDEKRFRVIASCKASNEDSQAQKLAIEKLVLGR 678

Query: 369  SDVKPGMVVKGK--VIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG---KKFKVGAE 423
            S ++  +V K K  V+  D+          ++ +  + H+S+  I +     KK K+G++
Sbjct: 679  SIIEVNVVEKTKDSVVVEDA-------DSNLRGVIYVGHLSDSRIEQNRATIKKIKIGSK 731

Query: 424  LVFRVLGV--KSKRITVTHKKTLV---KSK-LAILSSYAEATDRLIT-HGWITKIEKHGC 476
            L   V+    +++   ++ KK+L+   K+K L I  S   + D+    HG+I  I   G 
Sbjct: 732  LTGVVIDKDDRTRVFNLSMKKSLIDDAKNKTLPISFSDIISLDKTTPLHGYIKSISNTGI 791

Query: 477  FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RIMSSIPASRRIN 526
            FV F     G    S        + +  ++V Q V            R + ++  S+   
Sbjct: 792  FVAFNGKFVGLVLPSYAVESRDVDINKSFYVNQSVTSYLLRTDEENERFLLTLKNSKADQ 851

Query: 527  LSFMMKPTRVSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 582
             S     + +S+     D +K+G  +   +  V+   V++  +    +  +  T+ L D+
Sbjct: 852  TSGAANASAISQSTENLDTIKVGDKIPARIVKVSGKHVILD-LGNKITGVSFITDALNDY 910

Query: 583  L-----EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN 637
                  E+   +   I        ++ ++ ++  + LS + +   + Q L    + I   
Sbjct: 911  SVSLSDEYQNKLNKTIDA-----TVISINTKAKKVNLSLRTN--EAKQHLIESHNDIKQG 963

Query: 638  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
             VVHG + NI ++G F+     +  F P SK  D    D  K Y   Q V   ++   S+
Sbjct: 964  DVVHGLIKNINDSGVFIYLSTNIDAFVPVSKLSDSYLKDWKKFYNPLQHVIGKVVSCESD 1023

Query: 698  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
              RI ++L++S  +  D   ++++  +E                       +G +  G V
Sbjct: 1024 -DRILVTLRESEVNG-DLKILKDYSSIE-----------------------VGEIFNGNV 1058

Query: 758  HESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGSVIQAAILDVAKAERLV 809
                DFGV V  +   +V G     ++A         A   +G  ++A +L V   ++ V
Sbjct: 1059 KNVTDFGVFVKLDNTVNVTGLAHKSEIADDKIPDDLSALFGAGDRVKAIVLRVNAEKKQV 1118

Query: 810  DLSLKTVFIDRFREANSNRQAQKK 833
             L LK  +   F   N N ++ +K
Sbjct: 1119 SLGLKASY---FSNDNYNEESNEK 1139



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 12/231 (5%)

Query: 1205 ISRTVRGTFHVELSLRSSLDGMSSTNS-SDLSTDVDTPGKHLEKIEDLSPNMIVQGY-VK 1262
            + R+  G  H+   +++ + G ++ +    LSTD +       +  D+    +V G  + 
Sbjct: 445  VHRSKLGDIHISGDIQARVIGYNTIDKIYQLSTDPNALKLKYIRAADIPNGELVTGCEII 504

Query: 1263 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1321
            NV+S G  + + + +  A V   ++SD  +  PE++F IG  + GR+L V   +KR  + 
Sbjct: 505  NVSSDGIELKIFNGQFSAFVPPLHISDVKLSYPERKFKIGSKIKGRILEV---TKRGHII 561

Query: 1322 LKTSDSRTASQSEI--NNLSNLHVGDIVIGQIKRVESY---GLFITIENTNLVGLCHVSE 1376
            +    S    +++I  + +S   + +     +  VES+   G  I+     L G    SE
Sbjct: 562  MTLKKSLVNDENKIVDDYVSAKQLQNKNEKTVATVESFKPNGCLISFFG-GLRGFLPNSE 620

Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            +SE  V   E   R G+ V +KIL VD+++ R+    K+S   + A  L +
Sbjct: 621  ISEAFVRKPEQHLRLGQTVIIKILDVDEKRFRVIASCKASNEDSQAQKLAI 671


>gi|134111727|ref|XP_775399.1| hypothetical protein CNBE1150 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258058|gb|EAL20752.1| hypothetical protein CNBE1150 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1484

 Score =  352 bits (904), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 226/693 (32%), Positives = 378/693 (54%), Gaps = 50/693 (7%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            I  G I+ G + +  S   G +VQ+  +L GRVH  +  +  V     G       PL+ 
Sbjct: 808  IEVGQIITGTVQEQTSQ--GYMVQLPNNLRGRVHPCDSSDYLVLAAGHG-------PLT- 857

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
               G+ VKC VL+++R+ R    ++LS R S + G  +    +++T           ++D
Sbjct: 858  --VGEEVKCYVLDVNRSKRA---IDLSTRLSRVQGKENVVDREINT-----------VDD 901

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L     V+G VKN+   G F+ L R + A++++  L D YV+  +  F I +LV+G++LS
Sbjct: 902  LKEGESVRGLVKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWKSRFEINQLVSGKILS 961

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
            + P S  +E+TL+ + S++A ++ + +LS+   G  V+  +++VE+YG+F+ IE +N+ G
Sbjct: 962  INPGSNSIEMTLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSG 1021

Query: 1371 LCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            LCH SE++++   ++      +R G++VK KI+ +D EK +IS G+K+SYF  + +  + 
Sbjct: 1022 LCHKSEITDNRKADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKASYFGEEFEGGEK 1081

Query: 1428 SSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNL 1487
            S +E+ +   E    +N       S         E ED  SL +   E  A+    +   
Sbjct: 1082 SEDEDDEADEENDEQFNEGDQEMESDAGESGEGQEHEDEESLEIDGGEEEATSDEEDNAP 1141

Query: 1488 DDEQPDMDNGISQNQGH--TDEAKTIDEKNNRH----------AKKKEKEEREQEIRAAE 1535
             + +P     ++   G   T EA     +++            AK K K +       A 
Sbjct: 1142 QNFKPAPKTALNLGAGFDWTGEAPAAAPESDDESDSDEEAVAPAKAKGKSKAVDLTATAP 1201

Query: 1536 ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1595
                    P +  E+ER + +SPNSSF+WI+YM+F L + ++EKAR I  +AL+ I+ RE
Sbjct: 1202 -----SSRPSSTGEYERALLASPNSSFLWIQYMSFHLQLHEIEKARKIGRQALEKISYRE 1256

Query: 1596 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1655
            E EKLN+W+A  NLE  +G     A  KVF+ A QY D + V++      +   +++  +
Sbjct: 1257 EEEKLNVWMALINLEIAFGTV--SATEKVFEEAAQYNDKRTVYMRYAEALQVAGKDEALE 1314

Query: 1656 ELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1714
            EL  K++KKF    + W R  +  L K   E  +A++ R++ SL + KH++ I + A+LE
Sbjct: 1315 ELFKKIVKKFSAYPESWTRFAEFYLNKGDVEAARALLPRSMKSLDKSKHVETIEKMALLE 1374

Query: 1715 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1774
            FK G A+RG+++FEG++  +PKR DLW +Y+DQ  ++GD+  +RGL +RA+   L  KK 
Sbjct: 1375 FKQGDAERGKTLFEGLVDRFPKRLDLWGVYIDQVAKVGDIQGVRGLMDRALEQKLTSKKA 1434

Query: 1775 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            KFLFKK+L  E+ +G+    +  K +A E+VE+
Sbjct: 1435 KFLFKKWLTIEQRIGDAAGQDKAKTRAREWVEA 1467



 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 158/651 (24%), Positives = 282/651 (43%), Gaps = 61/651 (9%)

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRNNLAEN-SGIDVKPGLLLQGV 158
           ++ G  L   VKS ED G+I+  GL      S  GF+ ++ +A+      + PG LL   
Sbjct: 247 LETGYFLVGEVKSEEDKGWIVGVGLNTQGGSSVEGFVSKDEVAKFVPAQALIPGQLLPAT 306

Query: 159 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
           + SI    +V +LS +   +++    ++   ++  +VPG  V+  + +++ +G+ +    
Sbjct: 307 ISSIAAGGRVAHLSLNQQDITRSQISEVS--TVGSIVPGHSVNALITAVVPSGLNVKVAG 364

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF----VDPTSRAVGLTLNPYLLHNR 274
           +F GT+D+ HL       + +N Y   KK+ AR+++     +P S A  L+  P++L+  
Sbjct: 365 FFDGTIDLAHL--PLGEDDIENKYKIGKKIRARVIYDNLAANPHSFA--LSALPHVLNFT 420

Query: 275 APPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 325
           +P            + +G +Y   KV RV    G+++    T      +V IS +A+E +
Sbjct: 421 SPTQEGDNTPLELAIPIGKVYQSVKVTRVLNDWGVMV---RTQDGLEGFVHISHLADERI 477

Query: 326 RKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
             L     ++K G+  R R++G   ++G+     + S    L     ++K G  +KG + 
Sbjct: 478 PVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQSVLSQLFMQVDELKVGQQLKGTIR 537

Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTH 440
            +      V   G V  +    H ++  +  P K+FK    +  RVL ++    R+ +T 
Sbjct: 538 RLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEGSVKARVLYLEPTRNRVVLTL 597

Query: 441 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
           KKT ++S LA+   + +     +T G + KI   G  V  + G++ F P SE        
Sbjct: 598 KKTFLESDLAVPQGFEDLKVGEVTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTHIKN 657

Query: 501 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPN 558
            S  +++G+ +  R+++   ++ RI +S              KL  G  VSG V  V   
Sbjct: 658 LSEAFYIGKPLTVRVITVDASASRIVVSAKQAAPTAPATAAEKLEVGEAVSGTVSQVHTE 717

Query: 559 AVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD-NESSNLL-- 613
            VVV +   G +   +   +L++   H  +  ++  +K G + D L+V+  N  S L+  
Sbjct: 718 QVVVKLDGNGLT-ALLSLSNLSNQ-RHTGIEELRRSLKEGEKIDDLVVVSKNPVSGLIIV 775

Query: 614 -----LSAKYSLINSAQQLPSDAS-------HIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
                ++AK        + PS  S        I    ++ G V      G  V+    L 
Sbjct: 776 NIKKTITAKKEKAKKEDKAPSGISAHVKAIDAIEVGQIITGTVQEQTSQGYMVQLPNNLR 835

Query: 662 GFAPRSKAVDGQR----ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G   R    D       A       VG+ V+  +LDVN     I LS + S
Sbjct: 836 G---RVHPCDSSDYLVLAAGHGPLTVGEEVKCYVLDVNRSKRAIDLSTRLS 883



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 125/281 (44%), Gaps = 32/281 (11%)

Query: 101  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG--- 157
            +++ ++ G ++T  V+     GY++          LP N        D    L+L     
Sbjct: 804  AIDAIEVGQIITGTVQEQTSQGYMVQ---------LPNNLRGRVHPCDSSDYLVLAAGHG 854

Query: 158  ----------VVRSIDRTRKVVYLSSDPDTVS---KCVTKDLKGISIDLLVPGMMVSTRV 204
                       V  ++R+++ + LS+    V      V +++   ++D L  G  V   V
Sbjct: 855  PLTVGEEVKCYVLDVNRSKRAIDLSTRLSRVQGKENVVDREIN--TVDDLKEGESVRGLV 912

Query: 205  QSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 264
            ++I  +GV +S     T  + I  L + +   +WK+ +  ++ V+ +IL ++P S ++ +
Sbjct: 913  KNIAGHGVFVSLGRNVTARIMIKELFDEY-VKDWKSRFEINQLVSGKILSINPGSNSIEM 971

Query: 265  TLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDV 320
            TL      +    + + + D  +  KVV V R     G+ L I  + VS   + + I+D 
Sbjct: 972  TLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEITDN 1031

Query: 321  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 361
             + +V +  K ++EG  V+ +I+     +G  +  +KAS F
Sbjct: 1032 RKADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKASYF 1072


>gi|191256845|ref|NP_001122095.1| programmed cell death 11 [Xenopus laevis]
 gi|189441690|gb|AAI67486.1| LOC779090 protein [Xenopus laevis]
          Length = 1812

 Score =  351 bits (900), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 356/1390 (25%), Positives = 638/1390 (45%), Gaps = 151/1390 (10%)

Query: 6    ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLLP- 59
            +S GM   G V    + +L + LP  L G  +A    DA   ++  ++E ++  + L+P 
Sbjct: 76   LSVGMLFLGCVKRTKDFELTVSLPYCLTGYIQATNICDAYTNLISEQVEKDDPLEALVPL 135

Query: 60   -TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 118
              ++  G LV C +  L+      G   + LS+    + K L+  +++ GMVL+  V S+
Sbjct: 136  SELYSPGMLVRCAISSLETTAS--GFPSVKLSVNPKHVNKALNTGSIKTGMVLSGCVSSV 193

Query: 119  EDHGYILHFGLPSFTGFLPRNNLA-----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 173
            EDHGY++  G+     FLPR            G  ++ G  L  VV  +    K+V LS 
Sbjct: 194  EDHGYLVDIGVAGTKAFLPRQKAQLFLSQAGQGSLLRVGEYLNCVVEEVKNEGKIVRLSI 253

Query: 174  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
              + V+  +    +  +++ L+PG++   +++ ++ N + LSFL+ +TG VD  H +   
Sbjct: 254  IQNDVASALATVEQNWNLNNLLPGLVFKAQIEKVMHNNITLSFLSSYTGFVDFLHFE--- 310

Query: 234  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRAPP-SHVKVGDIYDQSK 290
                    Y + ++V A IL++DP+++ + LTL    L   N  P  +   VG + D   
Sbjct: 311  --PKKIGSYKEGQEVKACILWLDPSTKTIRLTLRQCFLQPGNTLPQLTSDWVGSVLDNCV 368

Query: 291  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 350
            V  + +  G + ++    +       +S   +       +K+K+G+  + RI  F  ++ 
Sbjct: 369  VQTLFKNAGAVFELEGGNLGFAFKHHLSASKQPHF----EKFKKGTTHKGRITDFSPMDE 424

Query: 351  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
            +    LK      L   H D++PG V++G V  +++ G +VQ    +  L P  H ++  
Sbjct: 425  MHILSLKEKVITNLFLRHEDIQPGQVLEGTVKCMEAVGMVVQITDHLTGLVPKLHFADVL 484

Query: 411  IVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
            +  P KK+ +G ++  +VL V +  +++ +T K+TL+KS L +L+SY +A   LITHG+I
Sbjct: 485  LKHPEKKYIIGNKIKCKVLTVVTCERKLILTRKRTLMKSTLPVLASYEDAQPGLITHGFI 544

Query: 469  TKIEKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
              I+ +GC V+FYN VQG APR ELG L         ++ GQV+K +++   P ++++ L
Sbjct: 545  VAIKDYGCLVKFYNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVQVLECNPQTQQLLL 604

Query: 528  SFMMKPTRVSEDD--------LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
            SF +     +E +         VKL  G LV   V   T   V V V+ +  S   IP  
Sbjct: 605  SFRITEEGHTEQEQRFLKKIKAVKLDVGKLVDIRVLSKTDKGVNVLVLPE-ESPAFIPKM 663

Query: 578  HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH 635
            HL+DH+ +  ++   ++ G +    + L +   + +L+ K  LI+S ++       S + 
Sbjct: 664  HLSDHVSNCELLWHTLQEGDDIPGAMCLSSLKGHSILTKKSLLISSVEKGSCVKVISEVQ 723

Query: 636  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
                + G+V +I+  G FV F   L G  P S+  D    ++   +  G +V + ++ ++
Sbjct: 724  TGMHLTGFVKSIMPYGVFVEFPYGLFGLVPMSEISDKFVTNIRDHFVEGNTVVATVIKMD 783

Query: 696  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ------SSKHNGSELKWVEGFII 749
             E  R  L+LK S C+  D S ++  FLL +  + LQ      + K +  +   +   I 
Sbjct: 784  EEKKRFLLTLKMSECAPDDYS-IEGLFLLSQCFSELQLMKGLLARKGDPEDELSIYTLIA 842

Query: 750  GSVIEGKVHESNDFGVVVSFEEHSDVYGF----ITHHQLAGATVESGSVIQAAILDVAKA 805
            G  +   V  + + G  V F   S + G      T + +    + +G  ++A +L V   
Sbjct: 843  GQKLTLVVENAEENG-PVQFSAGS-ISGAQTVSATQYHIGDKALVAGQKVKAVVLHVDML 900

Query: 806  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 865
               V +SL    +               K+K+   K    H   +A V+ V E + V+SL
Sbjct: 901  TLHVHVSLNQTLL---------------KKKQNVPKMNSSH---SADVQHVAEEFAVVSL 942

Query: 866  PEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL-KAISETE 923
             +  H I     S  N T +F  ++   G++ I+ ++   + +  G LL +  KA S+T 
Sbjct: 943  ADSAHLIAVPVSSHLNDTFRFESEKLKVGET-ISVILKTTTVNEHGLLLAVQNKAASKTS 1001

Query: 924  ------TSSSKRAKKKSSY--DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 975
                  T S+ R +   S+   +G LV   +  IKP ++ +       G IH++++ D+ 
Sbjct: 1002 KNLGRTTQSAMRVRGAISHGLKIGDLVTGTVKSIKPTQVTVSINDNVFGFIHVSQIMDET 1061

Query: 976  SNVVENLFSNFKIG--QTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVS 1023
                +  F   K+   Q VT R+I     K+++      PD   S + ELS+ P ++   
Sbjct: 1062 P---QGCFPTSKLNPKQEVTCRVIGGREVKTHRYLPITHPDFIHS-VPELSLLPELINTD 1117

Query: 1024 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQEF 1081
             +      +    + G +VT YV K + E   L   I+  ++ ++ +L  +  P  L+  
Sbjct: 1118 NVPKPRALK--TFNPGDKVTCYVNKFNTETKYLEVEITPEIRGRIELLLLSQTPKNLKRP 1175

Query: 1082 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1141
            ++ F  G+A++  V+  +   K L L L     GI               + EG +    
Sbjct: 1176 EKLFKNGQALSATVVGPDAVHKHLCLSL----TGIHS-------------LEEGAVTVAC 1218

Query: 1142 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1201
            ++K++ G  GL + +    +G+     + ++C       Y E     L  +  G+FV+C 
Sbjct: 1219 VTKVVKG-SGLTLSLP---FGKTGNANMFHLC-----DKYAEAS---LEKFTPGKFVRCA 1266

Query: 1202 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1261
            +L  S+ V+      +SLR      S  N    S+ VD   + +  I+ L    +V G+V
Sbjct: 1267 ILSNSKIVK------VSLRQ-----SRVNQQAQSSAVD---EDIASIDSLEEGQLVSGFV 1312

Query: 1262 KNVT-SKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKR 1317
              +T +KG F  LS  +   +   N++  +V  P       P G L+  +VLS++P  K 
Sbjct: 1313 SAITENKGVFFRLSSFIVGHIQFQNVTSYFVYEPSAYSNYIPEGTLLTAKVLSIDPDKKH 1372

Query: 1318 VEVTLKTSDS 1327
            VE++L  +D+
Sbjct: 1373 VELSLLPTDT 1382



 Score =  277 bits (708), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 134/265 (50%), Positives = 187/265 (70%), Gaps = 3/265 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P++ D+F+RLV SSP+SS +W++YMAF L   ++EKAR +AERAL+TI+ REE EKLN+W
Sbjct: 1543 PQSADDFDRLVISSPDSSILWLQYMAFHLHATEIEKARVVAERALKTISFREEQEKLNVW 1602

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            VA  NLEN YG   EE++ K F+RA+QY +P KV   L  +Y ++E+ K A++L   M+K
Sbjct: 1603 VALLNLENMYGT--EESLTKAFERAVQYNEPLKVFQQLADIYIKSEKFKQAEDLYNTMLK 1660

Query: 1664 KFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
            +F+    VW++    LLKQ Q +G   ++QRAL SLP   H+  IS+ A LEF+ G  +R
Sbjct: 1661 RFRQEKSVWIKFATFLLKQGQGDGTHKLLQRALKSLPEKDHVDVISKFAQLEFQLGDTER 1720

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
             +++FE  LS YPKRTDLWS+Y+D  ++ G    +R +FER I LSL  KK+KF FK+YL
Sbjct: 1721 AKALFESTLSSYPKRTDLWSVYIDMMVKHGSQKEVRDIFERVIHLSLAAKKIKFFFKRYL 1780

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
            EYEK  G  E ++ VK+KA++YVES
Sbjct: 1781 EYEKKHGSTESVQAVKEKALQYVES 1805



 Score = 45.1 bits (105), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            +S +  G  + G +K +  YG+F+      L GL  +SE+S+  V NI   +  G  V  
Sbjct: 719  ISEVQTGMHLTGFVKSIMPYGVFVEFP-YGLFGLVPMSEISDKFVTNIRDHFVEGNTVVA 777

Query: 1398 KILKVDKEKRRISLGMKSS 1416
             ++K+D+EK+R  L +K S
Sbjct: 778  TVIKMDEEKKRFLLTLKMS 796


>gi|58267098|ref|XP_570705.1| rRNA processing-related protein [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57226939|gb|AAW43398.1| rRNA processing-related protein, putative [Cryptococcus neoformans
            var. neoformans JEC21]
          Length = 1484

 Score =  350 bits (898), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 226/693 (32%), Positives = 377/693 (54%), Gaps = 50/693 (7%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            I  G I+ G + +  S   G +VQ+  +L GRVH       C S        G   PL+ 
Sbjct: 808  IEVGQIITGTVQEQTSQ--GYMVQLPNNLRGRVH------PCDSSDDLALAAGH-GPLT- 857

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
               G+ VKC VL+++R+ R    ++LS R S + G  +    +++T           ++D
Sbjct: 858  --VGEEVKCYVLDVNRSKRA---IDLSTRLSRVQGKENVVDREINT-----------VDD 901

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L     V+G VKN+   G F+ L R + A++++  L D YV+  +  F I +LV+G++LS
Sbjct: 902  LKEGESVRGLVKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWKSRFEINQLVSGKILS 961

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
            + P S  +E+TL+ + S++A ++ + +LS+   G  V+  +++VE+YG+F+ IE +N+ G
Sbjct: 962  INPGSNSIEMTLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSG 1021

Query: 1371 LCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            LCH SE++++   ++      +R G++VK KI+ +D EK +IS G+K+SYF  + +  + 
Sbjct: 1022 LCHKSEITDNRKADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKASYFGEEFEGGEK 1081

Query: 1428 SSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNL 1487
            S +E+ +   E    +N       S         E ED  +L +   E  A+    +   
Sbjct: 1082 SEDEDDEVDEENDERFNEGDQEMESDAGESGEGQEHEDEEALEIDGGEEEATSDEEDNAP 1141

Query: 1488 DDEQPDMDNGISQNQGH--TDEAKTIDEKNNRH----------AKKKEKEEREQEIRAAE 1535
             + +P     ++   G   T EA     +++            AK K K +       A 
Sbjct: 1142 QNFKPAPKTALNLGAGFDWTGEAPAAAPESDDESDSDEEAVAPAKSKGKSKAVDLTATAP 1201

Query: 1536 ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1595
                    P +  E+ER + +SPNSSF+WI+YM+F L + ++EKAR I  +AL+ I+ RE
Sbjct: 1202 -----SSRPSSTGEYERALLASPNSSFLWIQYMSFHLQLHEIEKARKIGRQALEKISYRE 1256

Query: 1596 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1655
            E EKLN+W+A  NLE  +G     A  KVF+ A QY D + V++      +   +++  +
Sbjct: 1257 EEEKLNVWMALINLEIAFGTV--SATEKVFEEAAQYNDKRTVYMRYAEALQVAGKDEALE 1314

Query: 1656 ELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1714
            EL  K++KKF    + W R  +  L K   E  +A++ R++ SL + KH++ I + A+LE
Sbjct: 1315 ELFKKIVKKFSAYPESWTRFAEFYLNKGDVEAARALLPRSMKSLDKSKHVETIEKMALLE 1374

Query: 1715 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1774
            FK G A+RG+++FEG++  +PKR DLW +Y+DQ  ++GD+  +RGL +RA+   L  KK 
Sbjct: 1375 FKQGDAERGKTLFEGLVDRFPKRLDLWGVYIDQVAKVGDIQGVRGLMDRALEQKLTSKKA 1434

Query: 1775 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            KFLFKK+L  E+ +G+    +  K +A E+VE+
Sbjct: 1435 KFLFKKWLTIEQRIGDAAGQDKAKTRAREWVEA 1467



 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 158/648 (24%), Positives = 283/648 (43%), Gaps = 55/648 (8%)

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRNNLAEN-SGIDVKPGLLLQGV 158
           ++ G  L   VKS ED G+I+  GL      S  GF+ ++ +A+      + PG LL   
Sbjct: 247 LETGYFLVGEVKSEEDKGWIVGVGLNTQGGSSVEGFVSKDEVAKFVPAQALIPGQLLPAT 306

Query: 159 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
           + SI    +V +LS +   +++    ++   ++  +VPG  V+  + +++ +G+ +    
Sbjct: 307 ISSIAAGGRVAHLSLNQQDITRSQISEVS--TVGSIVPGHSVNALITAVVPSGLNVKVAG 364

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF----VDPTSRAVGLTLNPYLLHNR 274
           +F GT+D+ HL       + +N Y   KK+ AR+++     +P S A  L+  P++L+  
Sbjct: 365 FFDGTIDLAHL--PLGEDDIENKYKIGKKIRARVIYDNLAANPHSFA--LSALPHVLNFT 420

Query: 275 APPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 325
           +P            + +G +Y   KV RV    G+++    T      +V IS +A+E +
Sbjct: 421 SPTQEGDNTPLELAIPIGKVYQSVKVTRVLNDWGVMV---RTQDGLEGFVHISHLADERI 477

Query: 326 RKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
             L     ++K G+  R R++G   ++G+     + S    L     ++K G  +KG + 
Sbjct: 478 PVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQSVLSQLFMQVDELKVGQQLKGTIR 537

Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTH 440
            +      V   G V  +    H ++  +  P K+FK    +  RVL ++    R+ +T 
Sbjct: 538 RLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEGSVKARVLYLEPTRNRVVLTL 597

Query: 441 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
           KKT ++S LA+   + +     +T G + KI   G  V  + G++ F P SE        
Sbjct: 598 KKTFLESDLAVPQGFEDLKVGEVTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTHIKN 657

Query: 501 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPN 558
            S  +++G+ +  R+++   ++ RI +S              KL  G  VSG V  V   
Sbjct: 658 LSEAFYIGKPLTVRVITVDASASRIVVSAKQAAPTAPATAAEKLEVGEAVSGTVSQVHTE 717

Query: 559 AVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD-NESSNLL-- 613
            VVV +   G +   +   +L++   H  +  ++  +K G + D L+V+  N  S L+  
Sbjct: 718 QVVVKLDGNGLT-ALLSLSNLSNQ-RHTGIEELRRSLKEGEKIDDLVVVSKNPVSGLIIV 775

Query: 614 -----LSAKYSLINSAQQLPSDAS-------HIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
                ++AK        + PS  S        I    ++ G V      G  V+    L 
Sbjct: 776 NIKKTITAKKEKAKKEDKAPSGISAHVKAIDAIEVGQIITGTVQEQTSQGYMVQLPNNLR 835

Query: 662 G-FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G   P   + D   A       VG+ V+  +LDVN     I LS + S
Sbjct: 836 GRVHPCDSSDDLALAAGHGPLTVGEEVKCYVLDVNRSKRAIDLSTRLS 883



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 123/536 (22%), Positives = 222/536 (41%), Gaps = 89/536 (16%)

Query: 248  VNARILFVDPTSRAVGLTLN-PYLLHNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLD 303
            V AR+L+++PT   V LTL   +L  + A P     +KVG++   S +  VD+G+     
Sbjct: 579  VKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFEDLKVGEVTLGSVLKIVDKGV----- 633

Query: 304  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL---KASA 360
            I        A++  S+ ++  ++ L + +  G  + VR++    ++  A+ I+   K +A
Sbjct: 634  IVELFAGLKAFMPHSECSQTHIKNLSEAFYIGKPLTVRVI---TVDASASRIVVSAKQAA 690

Query: 361  FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE---------FE 410
                      ++ G  V G V  V +   +V+  G G+ AL  L ++S            
Sbjct: 691  PTAPATAAEKLEVGEAVSGTVSQVHTEQVVVKLDGNGLTALLSLSNLSNQRHTGIEELRR 750

Query: 411  IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI---------LSSYAEATDR 461
             +K G+K     +LV       S  I V  KKT+   K            +S++ +A D 
Sbjct: 751  SLKEGEKID---DLVVVSKNPVSGLIIVNIKKTITAKKEKAKKEDKAPSGISAHVKAIDA 807

Query: 462  L----ITHGWITKIEKHGCFVRFYNGVQGFA----PRSELGLDPGCEPSSMYHVGQVVKC 513
            +    I  G + +    G  V+  N ++G         +L L  G  P +   VG+ VKC
Sbjct: 808  IEVGQIITGTVQEQTSQGYMVQLPNNLRGRVHPCDSSDDLALAAGHGPLT---VGEEVKC 864

Query: 514  RIMSSIPASRRINLSFMMKPTRVSED---------DLVKLGSLVSGVVDVVTPNAVVVYV 564
             ++    + R I+LS  +   +  E+         D +K G  V G+V  +  + V V +
Sbjct: 865  YVLDVNRSKRAIDLSTRLSRVQGKENVVDREINTVDDLKEGESVRGLVKNIAGHGVFVSL 924

Query: 565  IAKGYSKGTIPT---EHLADHLEHATVMKSV------IKPGYEFDQLLVLDNESSNLLLS 615
                 ++  I     E++ D      + + V      I PG    ++ +  N S +   +
Sbjct: 925  GRNVTARIMIKELFDEYVKDWKSRFEINQLVSGKILSINPGSNSIEMTLRKNPSKSAKKT 984

Query: 616  AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQR 674
            A  SL           S       V   V  +   G F++  G  ++G   +S+  D ++
Sbjct: 985  ALLSL-----------SDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEITDNRK 1033

Query: 675  ADLS---KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 727
            AD++   K +  G  V++ I+ +++E G+I+  +K        AS+  E F   EK
Sbjct: 1034 ADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIK--------ASYFGEEFEGGEK 1081



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 131/274 (47%), Gaps = 18/274 (6%)

Query: 101  SLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGIDVKPGLLLQG-- 157
            +++ ++ G ++T  V+     GY++   LP+   G +   + +++  +    G L  G  
Sbjct: 804  AIDAIEVGQIITGTVQEQTSQGYMVQ--LPNNLRGRVHPCDSSDDLALAAGHGPLTVGEE 861

Query: 158  ---VVRSIDRTRKVVYLSSDPDTVS---KCVTKDLKGISIDLLVPGMMVSTRVQSILENG 211
                V  ++R+++ + LS+    V      V +++   ++D L  G  V   V++I  +G
Sbjct: 862  VKCYVLDVNRSKRAIDLSTRLSRVQGKENVVDREIN--TVDDLKEGESVRGLVKNIAGHG 919

Query: 212  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 271
            V +S     T  + I  L + +   +WK+ +  ++ V+ +IL ++P S ++ +TL     
Sbjct: 920  VFVSLGRNVTARIMIKELFDEY-VKDWKSRFEINQLVSGKILSINPGSNSIEMTLRKNPS 978

Query: 272  HNRAPPSHVKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRK 327
             +    + + + D  +  KVV V R     G+ L I  + VS   + + I+D  + +V +
Sbjct: 979  KSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEITDNRKADVAQ 1038

Query: 328  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 361
              K ++EG  V+ +I+     +G  +  +KAS F
Sbjct: 1039 ALKGFREGDQVKAKIVSIDTEKGKISFGIKASYF 1072


>gi|116487529|gb|AAI26004.1| LOC779090 protein [Xenopus laevis]
          Length = 1427

 Score =  348 bits (893), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 356/1390 (25%), Positives = 638/1390 (45%), Gaps = 151/1390 (10%)

Query: 6    ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLLP- 59
            +S GM   G V    + +L + LP  L G  +A    DA   ++  ++E ++  + L+P 
Sbjct: 76   LSVGMLFLGCVKRTKDFELTVSLPYCLTGYIQATNICDAYTNLISEQVEKDDPLEALVPL 135

Query: 60   -TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 118
              ++  G LV C +  L+      G   + LS+    + K L+  +++ GMVL+  V S+
Sbjct: 136  SELYSPGMLVRCAISSLETTAS--GFPSVKLSVNPKHVNKALNTGSIKTGMVLSGCVSSV 193

Query: 119  EDHGYILHFGLPSFTGFLPRNNLA-----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 173
            EDHGY++  G+     FLPR            G  ++ G  L  VV  +    K+V LS 
Sbjct: 194  EDHGYLVDIGVAGTKAFLPRQKAQLFLSQAGQGSLLRVGEYLNCVVEEVKNEGKIVRLSI 253

Query: 174  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
              + V+  +    +  +++ L+PG++   +++ ++ N + LSFL+ +TG VD  H +   
Sbjct: 254  IQNDVASALATVEQNWNLNNLLPGLVFKAQIEKVMHNNITLSFLSSYTGFVDFLHFE--- 310

Query: 234  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRAPP-SHVKVGDIYDQSK 290
                    Y + ++V A IL++DP+++ + LTL    L   N  P  +   VG + D   
Sbjct: 311  --PKKIGSYKEGQEVKACILWLDPSTKTIRLTLRQCFLQPGNTLPQLTSDWVGSVLDNCV 368

Query: 291  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 350
            V  + +  G + ++    +       +S   +       +K+K+G+  + RI  F  ++ 
Sbjct: 369  VQTLFKNAGAVFELEGGNLGFAFKHHLSASKQPHF----EKFKKGTTHKGRITDFSPMDE 424

Query: 351  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
            +    LK      L   H D++PG V++G V  +++ G +VQ    +  L P  H ++  
Sbjct: 425  MHILSLKEKVITNLFLRHEDIQPGQVLEGTVKCMEAVGMVVQITDHLTGLVPKLHFADVL 484

Query: 411  IVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
            +  P KK+ +G ++  +VL V +  +++ +T K+TL+KS L +L+SY +A   LITHG+I
Sbjct: 485  LKHPEKKYIIGNKIKCKVLTVVTCERKLILTRKRTLMKSTLPVLASYEDAQPGLITHGFI 544

Query: 469  TKIEKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
              I+ +GC V+FYN VQG APR ELG L         ++ GQV+K +++   P ++++ L
Sbjct: 545  VAIKDYGCLVKFYNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVQVLECNPQTQQLLL 604

Query: 528  SFMMKPTRVSEDD--------LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
            SF +     +E +         VKL  G LV   V   T   V V V+ +  S   IP  
Sbjct: 605  SFRITEEGHTEQEQRFLKKIKAVKLDVGKLVDIRVLSKTDKGVNVLVLPE-ESPAFIPKM 663

Query: 578  HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH 635
            HL+DH+ +  ++   ++ G +    + L +   + +L+ K  LI+S ++       S + 
Sbjct: 664  HLSDHVSNCELLWHTLQEGDDIPGAMCLSSLKGHSILTKKSLLISSVEKGSCVKVISEVQ 723

Query: 636  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
                + G+V +I+  G FV F   L G  P S+  D    ++   +  G +V + ++ ++
Sbjct: 724  TGMHLTGFVKSIMPYGVFVEFPYGLFGLVPMSEISDKFVTNIRDHFVEGNTVVATVIKMD 783

Query: 696  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ------SSKHNGSELKWVEGFII 749
             E  R  L+LK S C+  D S ++  FLL +  + LQ      + K +  +   +   I 
Sbjct: 784  EEKKRFLLTLKMSECAPDDYS-IEGLFLLSQCFSELQLMKGLLARKGDPEDELSIYTLIA 842

Query: 750  GSVIEGKVHESNDFGVVVSFEEHSDVYGF----ITHHQLAGATVESGSVIQAAILDVAKA 805
            G  +   V  + + G  V F   S + G      T + +    + +G  ++A +L V   
Sbjct: 843  GQKLTLVVENAEENG-PVQFSAGS-ISGAQTVSATQYHIGDKALVAGQKVKAVVLHVDML 900

Query: 806  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 865
               V +SL    +               K+K+   K    H   +A V+ V E + V+SL
Sbjct: 901  TLHVHVSLNQTLL---------------KKKQNVPKMNSSH---SADVQHVAEEFAVVSL 942

Query: 866  PEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL-KAISETE 923
             +  H I     S  N T +F  ++   G++ I+ ++   + +  G LL +  KA S+T 
Sbjct: 943  ADSAHLIAVPVSSHLNDTFRFESEKLKVGET-ISVILKTTTVNEHGLLLAVQNKAASKTS 1001

Query: 924  ------TSSSKRAKKKSSY--DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 975
                  T S+ R +   S+   +G LV   +  IKP ++ +       G IH++++ D+ 
Sbjct: 1002 KNLGRTTQSAMRVRGAISHGLKIGDLVTGTVKSIKPTQVTVSINDNVFGFIHVSQIMDET 1061

Query: 976  SNVVENLFSNFKIG--QTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVS 1023
                +  F   K+   Q VT R+I     K+++      PD   S + ELS+ P ++   
Sbjct: 1062 P---QGCFPTSKLNPKQEVTCRVIGGREVKTHRYLPITHPDFIHS-VPELSLLPELINTD 1117

Query: 1024 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQEF 1081
             +      +    + G +VT YV K + E   L   I+  ++ ++ +L  +  P  L+  
Sbjct: 1118 NVPKPRALK--TFNPGDKVTCYVNKFNTETKYLEVEITPEIRGRIELLLLSQTPKNLKRP 1175

Query: 1082 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1141
            ++ F  G+A++  V+  +   K L L L     GI               + EG +    
Sbjct: 1176 EKLFKNGQALSATVVGPDAVHKHLCLSL----TGIHS-------------LEEGAVTVAC 1218

Query: 1142 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1201
            ++K++ G  GL + +    +G+     + ++C       Y E     L  +  G+FV+C 
Sbjct: 1219 VTKVVKG-SGLTLSLP---FGKTGNANMFHLC-----DKYAEAS---LEKFTPGKFVRCA 1266

Query: 1202 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1261
            +L  S+ V+      +SLR      S  N    S+ VD   + +  I+ L    +V G+V
Sbjct: 1267 ILSNSKIVK------VSLRQ-----SRVNQQAQSSAVD---EDIASIDSLEEGQLVSGFV 1312

Query: 1262 KNVT-SKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKR 1317
              +T +KG F  LS  +   +   N++  +V  P       P G L+  +VLS++P  K 
Sbjct: 1313 SAITENKGVFFRLSSFIVGHIQFQNVTSYFVYEPSAYSNYIPEGTLLTAKVLSIDPDKKH 1372

Query: 1318 VEVTLKTSDS 1327
            VE++L  +D+
Sbjct: 1373 VELSLLPTDT 1382



 Score = 44.7 bits (104), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 1333 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
            S +  +S +  G  + G +K +  YG+F+      L GL  +SE+S+  V NI   +  G
Sbjct: 714  SCVKVISEVQTGMHLTGFVKSIMPYGVFVEFP-YGLFGLVPMSEISDKFVTNIRDHFVEG 772

Query: 1393 EKVKVKILKVDKEKRRISLGMKSSYFKND 1421
              V   ++K+D+EK+R  L +K S    D
Sbjct: 773  NTVVATVIKMDEEKKRFLLTLKMSECAPD 801


>gi|320165905|gb|EFW42804.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 2281

 Score =  348 bits (893), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 332/1224 (27%), Positives = 551/1224 (45%), Gaps = 182/1224 (14%)

Query: 9    GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-----------LDNEIEANEDNL 57
            G+ L G + EV E DL++ LP  L G  R  D  + +            D+E   ++   
Sbjct: 210  GLVLLGAIREVGEIDLLVSLPNALTGSVRITDITEELKTTVAQITAAATDDEDFTDKLPK 269

Query: 58   LPTIFHVGQLVSCIVL----QLDDDKKEIG-------KRKIWLSLRLSLLYKGLSLETVQ 106
            L ++F VG +V C V     ++D+D  E         KR++ L+L  S + + L+ ET+ 
Sbjct: 270  LASMFSVGDVVQCAVSSVEGKVDEDAGESKPASDKPVKRRVHLTLLPSAINRQLTFETIL 329

Query: 107  EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRS 161
               ++ A VKS+EDHGY+L  GL     FLP+ N      A  SG  + PG  ++  V S
Sbjct: 330  PNQIIPASVKSVEDHGYVLSIGLEGVHAFLPKGNSTAYLKARGSGA-LAPGSYVRCAVVS 388

Query: 162  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
              +  KVV ++ DP  ++  V       S   L+P M V  RV S+  +GV +S+   F 
Sbjct: 389  ASKMSKVVTVTVDPAVLTSAVVTATPSASS--LLPDMRVKARVTSVSNSGVRVSY-AGFA 445

Query: 222  GTVDIFHLQNTFPTTNWKNDYNQHKKVN----------ARILFVDPTSRAVGLTLNPYLL 271
            GT+D++HL +T P +  +      + +           ARILFV+ +++ +  T+ P LL
Sbjct: 446  GTIDLYHLGDT-PASFAEGGAKTLEAIKELCPVGSELAARILFVNASAKTIAFTIRPGLL 504

Query: 272  -HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
             H+  P + + +GDI D+++V+  D  LGL+L +P    +   +  IS+++++ +  L K
Sbjct: 505  THHVKPATDLHIGDIIDKTRVLTADPQLGLVLHLPVG--NHIGFAHISNLSDDRIGLLGK 562

Query: 331  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 390
            K+   S  R R++G+  ++GL    L+ S  +        +KPG +V G V+ V   G  
Sbjct: 563  KFASNSQHRARVIGYSLIDGLFLVSLQPSVLKLPFLRIEHIKPGSLVTGTVLDVVPAGVT 622

Query: 391  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSK 448
            VQ    ++   P  HMS+ ++ K  K    GA +  RVL V +  +R+ +THKK+LVK+ 
Sbjct: 623  VQLTDTIRGFIPGSHMSDVQLTKAPKHMSAGASVECRVLEVDTERRRVFLTHKKSLVKTS 682

Query: 449  LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 508
            L I+++Y EA   L+T G+IT ++ +GC V F+  V  F P+SEL L    +P   +   
Sbjct: 683  LPIVAAYTEAQPGLVTQGFITSVKPNGCVVTFFGKVHAFVPKSELSLG-AADPEKFFKRN 741

Query: 509  QVVKCRI--MSSIPASRRINLSFMMK----PTRVSEDDL---VKLGSLVSGVVDVVTPNA 559
            QV+K RI  +      RR+  SF         RVS +     +++GS+VSG V      +
Sbjct: 742  QVMKVRILELDLTGERRRLIASFKWNEESASQRVSSEAFGKDLQVGSIVSGTVTSFDETS 801

Query: 560  VVVYVIAKGYSKG--TIPTEHLADHLEH-ATVMKSVIKPGYEFDQLLVLDNESSNLL-LS 615
            + V V       G  TIP+  L DH+ H   +++   + G+  D+ LVL   +   + LS
Sbjct: 802  LTVLVKDSHGETGSITIPSSQLTDHVCHEKQLLRVYAEKGFVLDRCLVLAKPAPGRIELS 861

Query: 616  AKYSLINSAQQ---LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 672
             K SL+ +A     LP+  S +   +V+ G+V +I   G FV FL  LTG    ++    
Sbjct: 862  LKPSLLEAAASTKVLPA-VSTLATGAVLPGFVKSIQPYGVFVGFLNGLTGLTHLTRLAGH 920

Query: 673  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI---A 729
                 ++ + VGQSV++ +++V+ E  ++TLSL  S  +S+ +S     F  E+      
Sbjct: 921  FVTAPAEEFAVGQSVKAAVVEVDREDSKLTLSLNDSAVTSSSSSAFVSTFFAEQDTIIRR 980

Query: 730  MLQSSKHNGSEL------KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 783
            +  ++K + S L      K +        +EG V +    G ++   E   V G+++   
Sbjct: 981  LCATAKPHESALAIPAARKRLSEIATSITVEGTVTQVKATGAMLDLGE--GVNGWVSKEH 1038

Query: 784  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ------------ 831
            LAG+       +  A+LDV     LVDLSLK  F+          QA             
Sbjct: 1039 LAGSKPAVNGKLTCAVLDVDPIANLVDLSLKPEFVSASANPFEPLQAHFAAPAPSGTSTP 1098

Query: 832  -----KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 886
                        A+   GV  T++AIVE+VK  YL+LS      S  +AS  D+NT    
Sbjct: 1099 KSKKGAASAAAAATPASGV--TIDAIVELVKPEYLILSSAAAPGSHFFASCKDFNTAVRG 1156

Query: 887  QKQFLNGQSVIATVMALPSSSTAG----------------------------RLLLLLKA 918
               +  G +V   +  LP++ +A                             R L +++ 
Sbjct: 1157 APHYNVGNAVKVLLTRLPAAVSAPAATNKGKGKAAAPAASDSVDVLANLSSRRALAVVQG 1216

Query: 919  ISETETSSSKRAKK--------------------KSSYDV--GSLVQAEITEIKPLELRL 956
             S    + +                         KS  DV  G +VQ  +     + + +
Sbjct: 1217 RSAAPAAEATNGHASAAAAATSKRASRPTMDNGFKSVDDVKLGQMVQGAVISTSAMHVNV 1276

Query: 957  KFGIGFHGRIHITEVND--------------------DKSNVV----ENLFSNFKIGQTV 992
              G   H R+ ITE+ D                    D+ NV      N  ++F+ G   
Sbjct: 1277 DLGNKVHARLFITEILDHSHVEQPANKRSTPSHTAAADEVNVATIDRNNPLASFQPGMRF 1336

Query: 993  TARIIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1042
            +AR++   +K                 L EL ++P++L    +    L     ++ GQ +
Sbjct: 1337 SARVVGFLDKHSHTYLPISHTVGGTRKLVELCMRPALLAAQSVE---LITIKSLTQGQLL 1393

Query: 1043 TGYVYKVDNEWALLTISRHLKAQL 1066
             GYV +V ++   ++++  +K ++
Sbjct: 1394 DGYVDEVRSDKVEVSVTPFIKVRV 1417



 Score =  291 bits (744), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/298 (48%), Positives = 211/298 (70%), Gaps = 10/298 (3%)

Query: 1517 RHAKKKEKEEREQEIRAAEERLLEKD--APRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1574
            R  +K  K+  E EI  AE+ LL +D  AP T ++FERLV +SPNSS+ WIK+MAF LS+
Sbjct: 1990 RRQRKAAKKREEAEIAQAEQALLTRDGAAPETVEDFERLVLASPNSSYAWIKFMAFHLSL 2049

Query: 1575 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634
            ++V++AR + ++AL+TI+ REE E+LN+WVA  NLEN++G   ++AV + F RA+  CDP
Sbjct: 2050 SEVDRARQVGDQALKTISYREERERLNVWVALLNLENKFGG--KDAVQQTFDRAVANCDP 2107

Query: 1635 KKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRR-VQRLLKQQQEGVQAVVQ 1692
            K VHL L+G+YE+T   K A E LYK    KFK S KVW++  + +L     EG +A++Q
Sbjct: 2108 KAVHLQLVGIYEQTPGKKEAAEQLYKTTCTKFKDSKKVWIQYGLFKLRNGDVEGARAILQ 2167

Query: 1693 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1752
            R+L SLP+ KHI  IS+ A +EFK+G  +RGR++FE IL+ YPKR DLWS+YLD EIR G
Sbjct: 2168 RSLKSLPKRKHIATISKFAQMEFKHGEPERGRTIFENILATYPKRLDLWSVYLDMEIRNG 2227

Query: 1753 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            DV+    +FE+  ++++  KKMK+  K++L++EK  G ++  ++VK KA  Y++S +A
Sbjct: 2228 DVN----VFEKVTNMNMSSKKMKYFLKRWLDFEKIHGNKQSADHVKLKAKSYLQSKMA 2281



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 108/194 (55%), Gaps = 9/194 (4%)

Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
            +  +ED+    I++G+V++   KGCF+ L   +  +VL+SNLSD ++      +  G+LV
Sbjct: 1628 IRSVEDVRVGQILRGFVRHTDEKGCFVNLGVNVVGRVLISNLSDRFLLKWRTAYSTGQLV 1687

Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
              +VL+V+   K++E++ +             +L  +  G     ++  VE YG+F+ IE
Sbjct: 1688 TAKVLAVDLAKKQIELSFRKEHIDPEHFVRAVSLKEIEEGQKYNAKVTGVERYGVFVKIE 1747

Query: 1365 NTNLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKE---KRRISLGMKSSYFKN 1420
            N+++ GL H SE+++    +N  +++  G+ V+V I ++ +E   K +I+  MK S+F +
Sbjct: 1748 NSDIAGLVHASEIADHQAPENFGSLFEVGDSVRVLIKQIVREKGKKAKINFSMKPSHFAD 1807

Query: 1421 DADNLQMSSEEESD 1434
                 +M +E ++D
Sbjct: 1808 -----EMEAEADAD 1816



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 195/473 (41%), Gaps = 62/473 (13%)

Query: 952  LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1010
            L L L   +G H G  HI+ ++DD+  +   L   F       AR+I  S         L
Sbjct: 532  LGLVLHLPVGNHIGFAHISNLSDDRIGL---LGKKFASNSQHRARVIGYS-----LIDGL 583

Query: 1011 WELSIKPSMLTVSEIGSKLLFEECD-VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1069
            + +S++PS+L       KL F   + +  G  VTG V  V      + ++  ++   FI 
Sbjct: 584  FLVSLQPSVL-------KLPFLRIEHIKPGSLVTGTVLDVVPAGVTVQLTDTIRG--FIP 634

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
             S     +L +  +    G +V   VL ++ E++ + L  +      S   V    +   
Sbjct: 635  GSHMSDVQLTKAPKHMSAGASVECRVLEVDTERRRVFLTHKKSLVKTSLPIVAAYTEAQP 694

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH-FTELKNICVSDPLSGYDEGQFDP 1188
              + +G I   + +       G VV      +G+VH F          P S    G  DP
Sbjct: 695  GLVTQGFITSVKPN-------GCVVT----FFGKVHAFV---------PKSELSLGAADP 734

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
               +   Q +K ++LE+  T          L +S      + S  +S++    GK     
Sbjct: 735  EKFFKRNQVMKVRILELDLTGE-----RRRLIASFKWNEESASQRVSSEAF--GK----- 782

Query: 1249 EDLSPNMIVQGYVKNV--TSKGCFIMLSRKLDAKVLL--SNLSDGYVESPE--KEFPIGK 1302
             DL    IV G V +   TS    +  S      + +  S L+D      +  + +    
Sbjct: 783  -DLQVGSIVSGTVTSFDETSLTVLVKDSHGETGSITIPSSQLTDHVCHEKQLLRVYAEKG 841

Query: 1303 LVAGRVLSV-EPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLF 1360
             V  R L + +P   R+E++LK S    A+ +++   +S L  G ++ G +K ++ YG+F
Sbjct: 842  FVLDRCLVLAKPAPGRIELSLKPSLLEAAASTKVLPAVSTLATGAVLPGFVKSIQPYGVF 901

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
            +   N  L GL H++ L+   V      +  G+ VK  +++VD+E  +++L +
Sbjct: 902  VGFLN-GLTGLTHLTRLAGHFVTAPAEEFAVGQSVKAAVVEVDREDSKLTLSL 953



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 16/190 (8%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            +IE + P  +V G V +V   G  + L+  +   +  S++SD  +    K    G  V  
Sbjct: 599  RIEHIKPGSLVTGTVLDVVPAGVTVQLTDTIRGFIPGSHMSDVQLTKAPKHMSAGASVEC 658

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            RVL V+   +RV +T K S  +T S   +   +    G +  G I  V+  G  +T    
Sbjct: 659  RVLEVDTERRRVFLTHKKSLVKT-SLPIVAAYTEAQPGLVTQGFITSVKPNGCVVT---- 713

Query: 1367 NLVGLCHV----SELSEDHVDNIETIYRAGEKVKVKILKVD--KEKRRISLGMKSSYFKN 1420
               G  H     SELS    D  E  ++  + +KV+IL++D   E+RR+    K   +  
Sbjct: 714  -FFGKVHAFVPKSELSLGAADP-EKFFKRNQVMKVRILELDLTGERRRLIASFK---WNE 768

Query: 1421 DADNLQMSSE 1430
            ++ + ++SSE
Sbjct: 769  ESASQRVSSE 778


>gi|448118427|ref|XP_004203493.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
 gi|448120825|ref|XP_004204076.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
 gi|359384361|emb|CCE79065.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
 gi|359384944|emb|CCE78479.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
          Length = 1712

 Score =  347 bits (891), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 259/893 (29%), Positives = 470/893 (52%), Gaps = 82/893 (9%)

Query: 936  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVT 993
            Y VG + +A I  I+  +L ++      GR+ +T+  +D S + +     S F     +T
Sbjct: 868  YSVGVVTKAIIKSIRGTQLNVQLSDNLQGRVDVTQCFNDWSEIKDKKQPLSKFAKNTEIT 927

Query: 994  ARII----AKSNK--PDMKKSFLWELSIKPSMLT-----VSEIGSKLLFEECDVSIGQRV 1042
             ++I    AK++K  P   +    +L ++ SML+      +E    +L    D+  G  V
Sbjct: 928  VKVIGYHDAKNHKFLPITHRKSAKQLILELSMLSREIEKPNEPYRDVLLR--DIPEGSEV 985

Query: 1043 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1102
              +V  +   +  ++++ +L+  + ++D + + S  ++ + +  IG A+      I+ E 
Sbjct: 986  VCFVNNIVKGFVWVSLTPNLRGHISLMDLSDDVSVYEDLENKVPIGMAIKATAKEIDSEH 1045

Query: 1103 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1162
              L L  R         T++   D     +  G  V  RI K+      ++VQ+G  L  
Sbjct: 1046 NSLVLTARK-------NTLNSIKD-----VKVGQKVPARIIKVKETY--VLVQLGDKL-- 1089

Query: 1163 RVHFTELKNICVSDPLSGYDEGQFDPLSG-YDEGQFVKCKVLEISRTVRGTFHVELSLRS 1221
                  + +  ++D L+ Y     D LS  +   +F    +L +         V +SLR+
Sbjct: 1090 ------IASSFITDALNNYS----DKLSDVFHVNEFACATILAVDE---ANDKVAVSLRN 1136

Query: 1222 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1281
                     +SD         K +   +DL    +V+G+VKN+ + G ++ L R + A V
Sbjct: 1137 QY-------ASD---------KLITSHKDLKQEDVVRGFVKNIANNGVYVSLGRTVHALV 1180

Query: 1282 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1341
             +S+LSD Y++  +K F   + V G+V ++    K + +TLK S+      + +   ++L
Sbjct: 1181 RVSDLSDSYLKDWKKFFKPNQPVIGKVSAINEDGK-ILLTLKESEVY-GKLNVLKKFNDL 1238

Query: 1342 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
             VGDI  G IK+V ++G+F+ ++ T  + GLCH SE+++  + ++ +++  G++VKVK+L
Sbjct: 1239 KVGDIFEGSIKQVTNFGVFVKLDGTVGVTGLCHHSEIADKTITDVSSLFGEGDRVKVKVL 1298

Query: 1401 KVDKEKRRISLGMKSSYF-------KNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSS 1453
             +D+ K+++SLGMK+SYF       K+DA++++MS+E    E        +++   +   
Sbjct: 1299 AIDESKKQLSLGMKASYFTDGSVSEKDDAEDVEMSNEGSEMEEDSSSDDEDQNDSDDEVM 1358

Query: 1454 VAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDE 1513
                D + E  D  S   +  ++   V  L  N  D    + + +   +  +DE     E
Sbjct: 1359 DDAFDGNEEDSDSASEEESTQKNDDKVTGLSTNGFDWTASILDQVQDEESSSDEEDFTRE 1418

Query: 1514 KNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1573
            K ++   K + +++  +I +         AP++  +FERL+ ++ +SS +W+ YM+F L 
Sbjct: 1419 KPSKKKSKAQVKDKTADINSR--------APQSVSDFERLLIANSDSSILWMNYMSFQLQ 1470

Query: 1574 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1633
            + +++KAR I ERAL++IN REE EK+NIW+A  NLEN +G+  +E++ + F+R+ QY D
Sbjct: 1471 LGEIDKAREIGERALKSINFREEQEKMNIWIALLNLENTFGS--DESLTETFKRSCQYMD 1528

Query: 1634 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQ 1692
               +H  ++G++  +E+   A  L   MIKKF  +  VW++    LL ++  E V  ++ 
Sbjct: 1529 SLIMHQKMVGIFVLSEKYDKASSLYNTMIKKFGKNVNVWVQYASYLLDREMNEEVHEILA 1588

Query: 1693 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1752
            R+L +LP+ +HI+ + + A LEF  G  ++GRS+FEG++++ PKR DLW++Y+DQEI+ G
Sbjct: 1589 RSLQALPKKEHIEVVRKFAQLEFTKGDPEQGRSLFEGLIADAPKRIDLWNVYIDQEIKKG 1648

Query: 1753 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            D   +  LFER ++  L  K+ +F F K+  +E SVG++  +  VK KAMEYV
Sbjct: 1649 DKKKVEDLFERVVTKKLSKKQARFFFNKWHSFEDSVGDQAAVARVKAKAMEYV 1701



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 180/696 (25%), Positives = 324/696 (46%), Gaps = 50/696 (7%)

Query: 50  IEANEDNLLPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ 106
           I  +E   LP++   F +G  +   V + D+++K    ++I LS+   +L + L  E + 
Sbjct: 168 ISTSEKKQLPSLQDLFTLGSWLIAKVYKPDNERK----KRIQLSVEPHVLNRSLEKEDLI 223

Query: 107 EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR 166
            G ++   + S+EDHG IL+ GLP+  GF+   ++A +SG D       Q ++ SI    
Sbjct: 224 SGNIMQCSIISVEDHGVILNTGLPNLGGFISNKDIA-SSGRDFDSLHAGQVILCSIINKP 282

Query: 167 KVVYLSSDP-DTVS---KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 222
               +   P D+V+     VT  +   SID + PG +V   V  I +NG++L        
Sbjct: 283 SGRTIGLKPLDSVAGSKNYVTSSIS--SIDAIQPGSLVDALVSEITKNGLVLKVFGMVDA 340

Query: 223 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--PYLL-------HN 273
           T+++ +L   +     K+ Y     + AR+  V P +    L L+  P +         +
Sbjct: 341 TINLANLH-VYDYQELKHKYTVSNTIKARVTAVLPRAGTKRLMLSHLPQITSLSTARNDD 399

Query: 274 RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 333
             P      G I++ + V+  D    + ++I ++ +    +V+  D      + L   Y 
Sbjct: 400 FNPLEAFPTGYIFEDATVISHDTNY-IYVNIGTSYLQAQVHVSRIDPD----KTLSIDYY 454

Query: 334 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV-KGKVIAV--DSFGAI 390
            GS  + R++G+   E L     +         + SD+  G  + K +V+ +  +S G  
Sbjct: 455 SGSKHKARVVGYNKYENLLVLSFEPKVINAPYLSVSDIPDGTFIEKCEVLKILPNSGGLE 514

Query: 391 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKL 449
           V+      A+ P  HMS+  +V P +KF++G ++  RVL  + K + +T KK+LV     
Sbjct: 515 VKVFDEFNAIVPPEHMSDIRLVYPERKFRIGGKVKSRVLSKRGKNLFITIKKSLVNIEDQ 574

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
            +LS++ +A     T   I K   +G  V F+  ++ F P+SE+      + S    +GQ
Sbjct: 575 EVLSNFDDAKIGFKTPATIEKFVYNGAIVNFFGNLKAFLPKSEISETFVEKASDYLRLGQ 634

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV-------V 562
            V  RI+S     +R+ ++ + +   +SE     L  +  G    +TP  VV       +
Sbjct: 635 TVNVRILSVNKEQKRLVVT-LKQSVDLSESQKSSLDDIHPG--KTITPATVVEKQKESVI 691

Query: 563 YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYS 619
             ++    +G I + HL+D + E    + + +K   E  Q+LVL  D ++ +++ +AK S
Sbjct: 692 VELSGSKLRGVIYSGHLSDDNYEQNRAIFNKLKVNDEL-QVLVLEKDLKARSVICTAKKS 750

Query: 620 LINSAQQ--LPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 676
           LI +A    +P+    I   + ++ G+V ++   G F+ F G+LTG      A D    +
Sbjct: 751 LIEAASNGMIPAYFKDIKVDDRMLRGFVKSVTNMGLFISFAGKLTGLVLAKYATDRPNEN 810

Query: 677 LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           L+K +Y  +SV   ++ V+ E  R  LSLK+   SS
Sbjct: 811 LAKKFYKYKSVSCRVIRVDEENKRFLLSLKKDNNSS 846



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 178/408 (43%), Gaps = 56/408 (13%)

Query: 986  FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1045
            F+IG  V +R+++K  K          ++IK S++ + +   ++L    D  IG +    
Sbjct: 542  FRIGGKVKSRVLSKRGKNLF-------ITIKKSLVNIED--QEVLSNFDDAKIGFKTPAT 592

Query: 1046 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1105
            + K     A++    +LKA  F+  S    + +++      +G+ V   +LS+NKE+K L
Sbjct: 593  IEKFVYNGAIVNFFGNLKA--FLPKSEISETFVEKASDYLRLGQTVNVRILSVNKEQKRL 650

Query: 1106 RLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQI-GPHLYG 1162
             + L+        ++VD+S     +   IH G  +    + +      ++V++ G  L G
Sbjct: 651  VVTLK--------QSVDLSESQKSSLDDIHPGKTITPA-TVVEKQKESVIVELSGSKLRG 701

Query: 1163 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1222
             ++   L     SD     +   F+ L   DE Q +  +    +R+V  T    L + ++
Sbjct: 702  VIYSGHL-----SDDNYEQNRAIFNKLKVNDELQVLVLEKDLKARSVICTAKKSL-IEAA 755

Query: 1223 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1282
             +GM      D+  D                + +++G+VK+VT+ G FI  + KL   VL
Sbjct: 756  SNGMIPAYFKDIKVD----------------DRMLRGFVKSVTNMGLFISFAGKLTGLVL 799

Query: 1283 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD--SRTASQSEINN--- 1337
                +D   E+  K+F   K V+ RV+ V+  +KR  ++LK  +  S T +   + N   
Sbjct: 800  AKYATDRPNENLAKKFYKYKSVSCRVIRVDEENKRFLLSLKKDNNSSDTFNDEPLQNPVD 859

Query: 1338 -----LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1380
                 + +  VG +    IK +    L + + + NL G   V++   D
Sbjct: 860  KSKAVIGDYSVGVVTKAIIKSIRGTQLNVQLSD-NLQGRVDVTQCFND 906



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 1239 DTP-GKHLEKIEDLS--PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
            D P G  +EK E L   PN           S G  + +  + +A V   ++SD  +  PE
Sbjct: 491  DIPDGTFIEKCEVLKILPN-----------SGGLEVKVFDEFNAIVPPEHMSDIRLVYPE 539

Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1355
            ++F IG  V  RVLS     K + +T+K S      Q  ++N  +  +G      I++  
Sbjct: 540  RKFRIGGKVKSRVLSKR--GKNLFITIKKSLVNIEDQEVLSNFDDAKIGFKTPATIEKFV 597

Query: 1356 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
              G  +     NL      SE+SE  V+      R G+ V V+IL V+KE++R+ + +K 
Sbjct: 598  YNGAIVNFFG-NLKAFLPKSEISETFVEKASDYLRLGQTVNVRILSVNKEQKRLVVTLKQ 656

Query: 1416 S 1416
            S
Sbjct: 657  S 657



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 5/191 (2%)

Query: 351  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
            +A  +    A + L+ +H D+K   VV+G V  + + G  V     V AL  +  +S+  
Sbjct: 1130 VAVSLRNQYASDKLITSHKDLKQEDVVRGFVKNIANNGVYVSLGRTVHALVRVSDLSDSY 1189

Query: 411  IVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
            +    K FK    ++ +V  +    +I +T K++ V  KL +L  + +     I  G I 
Sbjct: 1190 LKDWKKFFKPNQPVIGKVSAINEDGKILLTLKESEVYGKLNVLKKFNDLKVGDIFEGSIK 1249

Query: 470  KIEKHGCFVRFYN--GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
            ++   G FV+     GV G    SE+      + SS++  G  VK +++ +I  S++  L
Sbjct: 1250 QVTNFGVFVKLDGTVGVTGLCHHSEIADKTITDVSSLFGEGDRVKVKVL-AIDESKK-QL 1307

Query: 528  SFMMKPTRVSE 538
            S  MK +  ++
Sbjct: 1308 SLGMKASYFTD 1318


>gi|453087833|gb|EMF15874.1| nucleic acid-binding protein [Mycosphaerella populorum SO2202]
          Length = 1804

 Score =  347 bits (890), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 379/1459 (25%), Positives = 661/1459 (45%), Gaps = 190/1459 (13%)

Query: 416  KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH-----GWITK 470
            KK+KVG++   R++    +       +     +L  +SS  E  D  IT      G   K
Sbjct: 401  KKYKVGSKTHARIVFAIPEDDGARRTQAAELGQLLPMSSVVE--DAKITQVSQNKGLYLK 458

Query: 471  IE-KHGCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            +  KHG   R    V  FA  S++    ++     S  Y +    K RI+   P      
Sbjct: 459  LSAKHG---RDERSVTAFAHISQISDKRIESLSSTSGPYTIDSAHKVRIIGYSPIDNIYY 515

Query: 527  LSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV----VYVIAKGYSKGTIPTEHL 579
            +S    ++    +  DDL  +G++V+G VD +          + V       G +P +H+
Sbjct: 516  VSLKQSVLDQAFLRLDDLT-VGAVVNGTVDKIILGGATGLTGILVKLSDNITGLVPEQHI 574

Query: 580  ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSA-QQLPSDASHIHPN 637
            +D        K   + G+    ++L +D E  ++ L+ K  L++ A +++      + P 
Sbjct: 575  SDAQLKNPERK--YREGFPVKARILSVDTEKRHVRLTLKKQLVDDANEEIWKAYQGLQPG 632

Query: 638  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
                G +  +   G  V+F G +  + P ++  +       + +  GQ+VR  I+ V+ +
Sbjct: 633  MESKGTIIKLHPNGAVVQFYGPVRAWLPVAEMSETFIERPEQHFRSGQTVRVKIVSVSPD 692

Query: 698  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
            T  + ++ K       D    QE     +K+A        G +L      + G+V E K 
Sbjct: 693  TEEMKVTCKDHVAFGAD----QEQAW--DKVA--------GGQL------VSGTVTE-KS 731

Query: 758  HESNDFGVVVSFEEHSDVYGF--ITHH---QLAGATVESGSVIQAA------ILDVAKAE 806
             ES      +S +  S + G   +TH     LA A  E+  V          +LD     
Sbjct: 732  AES------ISLDLESGLRGMMRLTHFVDGSLAKAEKEAKRVRVGQKLKHLLVLDKIDRS 785

Query: 807  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG-VHQTVNAIVEIVKENYLVLSL 865
            + V LS K   ++  +  N        K   + +K  G V  T +  + +   N +V  L
Sbjct: 786  QTVMLSNKPSLVEDAKAGNLISTFSDVK---QGTKVHGFVRNTTSDAIFVEFANGIVGLL 842

Query: 866  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ET 924
            P+           D+  +K    Q LN       V  + +  +A R  L ++  + T E 
Sbjct: 843  PKSQILAEALDKPDFGVRK---DQTLN-------VWVMDTDVSAKRFRLTMREQAATAEQ 892

Query: 925  SSSKRA--------------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
            SS+ +A              K  S  + G + +A I  I+  ++ ++      GR+ ++E
Sbjct: 893  SSNPKASIDDALSKPIDPALKSLSDIEPGKVTKARIASIRATQINVRLADNVQGRVDVSE 952

Query: 971  VNDDKSNVVENL--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSM 1019
            V D    +        +FK    +  +++   +  + +         K  ++ELS K S 
Sbjct: 953  VFDSWDEISNKAAPLQSFKQNDLIDVKVLGIHDARNHRFLPFSHRQGKVPVFELSAKKSR 1012

Query: 1020 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1079
            +   +   K L +   V  G     +V         + +S +++ ++ ++D + +  +LQ
Sbjct: 1013 VQKDD---KSLLDLESVKPGSSQLAFVNNHAENCVWVNLSPNVRGRVALMDLSDDVGQLQ 1069

Query: 1080 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG 1139
              + RF IG A+  +V +++     L L  +               DN  T +   D+  
Sbjct: 1070 NVENRFRIGCALRVNVKAVDISAGRLDLTAK--------------QDNASTPLALKDLSP 1115

Query: 1140 GRI--SKILSGVGGLV-VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1196
            G +  ++++      V V++  +L   V   EL +         YD      L  Y +  
Sbjct: 1116 GMVLPARVIKATERAVSVELAKNLVAHVPLVELSD--------DYDSIN---LMQYSKND 1164

Query: 1197 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1256
             V+  V+ +    +  F   +SLR S           LS+ +      +  +  L    I
Sbjct: 1165 IVRACVISVDAPNKRAF---VSLRPS---------KVLSSSLPVKDAQISNVSQLKAADI 1212

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            V+G+VK V  KG F+ L   +DA V +S+LSD YV+     + + +LV GRVLSV+  +K
Sbjct: 1213 VRGFVKKVADKGVFVSLGADVDALVRISDLSDQYVKEWRSIYVVDQLVKGRVLSVDTDAK 1272

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN--LVGLCHV 1374
            +V+++LK S      +  +  +++L  G  V G++++VE +G FI I+NT   L GLCH 
Sbjct: 1273 QVQLSLKQSHVDGNYEPPLG-ITDLEAGMTVTGKVRKVEDFGAFIDIDNTQPRLSGLCHR 1331

Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1434
            SE++    +++  +Y AG+ VK K+LKVD E R+ISLG+K+SYF N+ D+     E+  D
Sbjct: 1332 SEVAARRTEDVRKLYSAGDVVKAKVLKVDVENRKISLGLKASYFANETDDGDDEDEDSED 1391

Query: 1435 EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM 1494
            E ++  G       L N S    ++D + +D  S    +        P + +        
Sbjct: 1392 EDVDMDGGVE----LSNDSDGGVEIDRDVQDADSEADVEDMMDVDDEPAKAS-------- 1439

Query: 1495 DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEERE-------QEIRAAEERLLEKDAPRTP 1547
              G  +  G   E + +D   N  A + E E           EI+      L+K+ P++ 
Sbjct: 1440 --GGLKTSGFNWEGEDLDAGTNGAAYESEPETVTTKKKKRKSEIKEDLTGDLDKNGPQSN 1497

Query: 1548 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1607
             +FER +   PN+S +WI+YMAF L ++++++AR+IAERAL+TINIRE +EKLNIW+A  
Sbjct: 1498 SDFERQLLGQPNNSGLWIQYMAFQLRLSEIQQARNIAERALRTINIRESDEKLNIWIALL 1557

Query: 1608 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI--KKF 1665
            NLE EYG+  ++ V + F+ A+Q  DP ++H  L  +Y  + ++  AD +  +MI  K F
Sbjct: 1558 NLEVEYGD--DDGVEEAFKNAVQVQDPLEMHEKLASIYIDSGRHAKADGIFERMIANKTF 1615

Query: 1666 KHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVAD 1721
            + S +VWL     LL+     +  +A++ +AL S+P ++H    ++ A LEF+  NG A+
Sbjct: 1616 RASPEVWLNYATFLLETLGNADRARALLTKALHSVPTNEHRLLTAKFAALEFRSVNGDAE 1675

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQE-----------IRLGDVDLIRGLFERAISLSLP 1770
            RGR++FEG++SE+ K +  W +++D E            ++  V+  R LFER + L + 
Sbjct: 1676 RGRTIFEGLMSEWSKWSSGWDMWVDIERSRISTQSSDDAKMEAVEKTRELFERIVKLPMK 1735

Query: 1771 PKKMKFLFKKYLEYEKSVG 1789
             ++ KF+FKK+L++E   G
Sbjct: 1736 KRRAKFVFKKWLDFENKEG 1754



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 299/1298 (23%), Positives = 547/1298 (42%), Gaps = 144/1298 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDN-------E 49
            + ++ G  + G V  +  +D+ + LP  L G         R    ++ +LD+       +
Sbjct: 141  KTLAVGSVVLGRVTAITGRDVALALPNNLTGYVPITAVSERLTARIERMLDDAKSGADED 200

Query: 50   IEANEDNLLPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEG 108
             E +ED  L  +FHVGQ +   V     D  E   K+ I LSL  + +  GL  + V   
Sbjct: 201  DEDDEDIDLKQLFHVGQWLRATVTSTGTDPAEGKSKKHIELSLDPTTVNGGLPEDNVVVN 260

Query: 109  MVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRT 165
             V+ A V+S+EDHG I+  GL   S  GF+ +  L     +D V+ G ++  +V      
Sbjct: 261  SVVQAAVRSVEDHGLIMDLGLSDESVKGFVSKKELGYAYDLDKVQEGQVMLCLVTGKGSN 320

Query: 166  RKVVYLSSDPDTVSKCV-TKDLKGI----SIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
             KV+ +S DP  +S  +  K L  I    S+D ++PG  V   +     +GV+   +   
Sbjct: 321  GKVLKISPDPSRMSLALGDKKLPTISDAPSVDAILPGTAVDVLITESGPSGVVGKIMGML 380

Query: 221  TGTVDIFHLQNT-FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH 279
              T D  H Q       +    Y    K +ARI+F  P       T     L    P S 
Sbjct: 381  DVTADAIHSQAIGLEEKDMSKKYKVGSKTHARIVFAIPEDDGARRT-QAAELGQLLPMSS 439

Query: 280  VKVGDIYDQSKVVRVDRGLGLLLDIPST----PVSTPAYVTISDVAEEEVRKLEKK---Y 332
            V      + +K+ +V +  GL L + +       S  A+  IS ++++ +  L      Y
Sbjct: 440  V-----VEDAKITQVSQNKGLYLKLSAKHGRDERSVTAFAHISQISDKRIESLSSTSGPY 494

Query: 333  KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG---KVI---AVDS 386
               S  +VRI+G+  ++ +    LK S  +       D+  G VV G   K+I   A   
Sbjct: 495  TIDSAHKVRIIGYSPIDNIYYVSLKQSVLDQAFLRLDDLTVGAVVNGTVDKIILGGATGL 554

Query: 387  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTL 444
             G +V+    +  L P  H+S+ ++  P +K++ G  +  R+L V +++  + +T KK L
Sbjct: 555  TGILVKLSDNITGLVPEQHISDAQLKNPERKYREGFPVKARILSVDTEKRHVRLTLKKQL 614

Query: 445  V-KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 503
            V  +   I  +Y      + + G I K+  +G  V+FY  V+ + P +E+       P  
Sbjct: 615  VDDANEEIWKAYQGLQPGMESKGTIIKLHPNGAVVQFYGPVRAWLPVAEMSETFIERPEQ 674

Query: 504  MYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNA 559
             +  GQ V+ +I+S  P +  + ++          +    D V  G LVSG   V   +A
Sbjct: 675  HFRSGQTVRVKIVSVSPDTEEMKVTCKDHVAFGADQEQAWDKVAGGQLVSGT--VTEKSA 732

Query: 560  VVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSA 616
              + +  +   +G +   H  D  L  A      ++ G +   LLVLD  + S  ++LS 
Sbjct: 733  ESISLDLESGLRGMMRLTHFVDGSLAKAEKEAKRVRVGQKLKHLLVLDKIDRSQTVMLSN 792

Query: 617  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK----AV 670
            K SL+  A+   L S  S +   + VHG+V N      FV F   + G  P+S+    A+
Sbjct: 793  KPSLVEDAKAGNLISTFSDVKQGTKVHGFVRNTTSDAIFVEFANGIVGLLPKSQILAEAL 852

Query: 671  D----GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 726
            D    G R D        Q++   ++D +    R  L++++   ++  +S  +    +++
Sbjct: 853  DKPDFGVRKD--------QTLNVWVMDTDVSAKRFRLTMREQAATAEQSSNPKAS--IDD 902

Query: 727  KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE----------SNDFGVVVSFEEHSDVY 776
             +     SK     LK +     G V + ++            +++    V   E  D +
Sbjct: 903  AL-----SKPIDPALKSLSDIEPGKVTKARIASIRATQINVRLADNVQGRVDVSEVFDSW 957

Query: 777  GFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKK 834
              I++      + +   +I   +L +  A+  R +  S +   +  F  +    + QK  
Sbjct: 958  DEISNKAAPLQSFKQNDLIDVKVLGIHDARNHRFLPFSHRQGKVPVFELSAKKSRVQKDD 1017

Query: 835  RKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQFLN 892
            +     + +    +  A V    EN + ++L P     +    +SD   Q +  + +F  
Sbjct: 1018 KSLLDLESVKPGSSQLAFVNNHAENCVWVNLSPNVRGRVALMDLSDDVGQLQNVENRFRI 1077

Query: 893  GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPL 952
            G ++   V A+  S  AGRL L  K     + +S+  A K  S   G ++ A + +    
Sbjct: 1078 GCALRVNVKAVDIS--AGRLDLTAK----QDNASTPLALKDLSP--GMVLPARVIKATER 1129

Query: 953  ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1012
             + ++        + + E++DD  ++  NL   +     V A +I+  + P+ K++F   
Sbjct: 1130 AVSVELAKNLVAHVPLVELSDDYDSI--NLM-QYSKNDIVRACVIS-VDAPN-KRAF--- 1181

Query: 1013 LSIKPSMLTVSEIGSKLLFEECDVS------IGQRVTGYVYKVDNEWALLTISRHLKAQL 1066
            +S++PS +    + S L  ++  +S          V G+V KV ++   +++   + A +
Sbjct: 1182 VSLRPSKV----LSSSLPVKDAQISNVSQLKAADIVRGFVKKVADKGVFVSLGADVDALV 1237

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ-DGISDKTVDISN 1125
             I D + +   ++E++  + + + V G VLS++ + K ++L L+    DG  +  + I++
Sbjct: 1238 RISDLSDQ--YVKEWRSIYVVDQLVKGRVLSVDTDAKQVQLSLKQSHVDGNYEPPLGITD 1295

Query: 1126 DNMQTFIHEGDIVGGRISKILS-GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1184
                  +  G  V G++ K+   G    +    P L G  H +E+               
Sbjct: 1296 ------LEAGMTVTGKVRKVEDFGAFIDIDNTQPRLSGLCHRSEVAARRTE--------- 1340

Query: 1185 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1222
              D    Y  G  VK KVL++    R    + L L++S
Sbjct: 1341 --DVRKLYSAGDVVKAKVLKVDVENR---KISLGLKAS 1373


>gi|367050128|ref|XP_003655443.1| hypothetical protein THITE_2119136 [Thielavia terrestris NRRL 8126]
 gi|347002707|gb|AEO69107.1| hypothetical protein THITE_2119136 [Thielavia terrestris NRRL 8126]
          Length = 1818

 Score =  347 bits (890), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 339/1322 (25%), Positives = 618/1322 (46%), Gaps = 177/1322 (13%)

Query: 561  VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSN-LLLSAKY 618
            ++  IA G S G +P  HLAD HL+H    +   + G +    ++  N + + + L+ K 
Sbjct: 562  LIVRIADGIS-GLVPEAHLADVHLQHP---EKKFREGMKVKARVLSTNPAMHQIRLTLKK 617

Query: 619  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 678
            +L+NS          +       G + ++++ G  V+F G+L GF P S+  +    D  
Sbjct: 618  TLVNSEAPPIKSYDELAVGLQAPGTIVSVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPK 677

Query: 679  KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 738
            + + VGQ+V   +L  + +  R+ +S K               F LE+++A+        
Sbjct: 678  EHFRVGQTVSIYVLSFDPDASRLIVSCKDPSA-----------FGLEKQLAL-------- 718

Query: 739  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA- 797
                  +   +G ++  KV +  +  + V   + S        H    +  ++ S ++  
Sbjct: 719  ------KKLQVGQLVSAKVTQKTEDDIFVELADSSLKAILPVGHLTDKSVSKTQSALKKI 772

Query: 798  ---------AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 848
                      +L+  +  R + LS K   +          QA K+ +      D  +   
Sbjct: 773  HVNQTLSELVVLEKNEGRRSITLSHKPSLV----------QASKEGKLLAHIDDARLGDQ 822

Query: 849  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 908
            V   V  +      +       ++   S+   + +  P       QS++  + ++     
Sbjct: 823  VPGFVRNITATAAFVQFAGKLTALLPKSMMPSDVRDKPSFGMHKSQSLVVKITSI--DKD 880

Query: 909  AGRLLLLL-KAISETETSSSKRAKKK-SSYD----------VGSLVQAEITEIKPLELRL 956
             GRL++ +  A  E   +S K A+K  +S D          VG L +A +  +K  +L +
Sbjct: 881  LGRLVVAIPSAAGEAAKTSQKNAEKAVNSVDDSIGSIDDLAVGKLTKARVKSVKETQLNV 940

Query: 957  KFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKS 1008
            +      GRI ++++ D   ++ +       FK G  +  R++    A++++  P   +S
Sbjct: 941  QIADNIQGRIDVSQIFDKWEDIPDPKRPLKRFKAGDILPVRVLGVHDARNHRFLPISHRS 1000

Query: 1009 F--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1066
               + ELS KPS L    +   L  E+ +         +V  V +    + +S +++ ++
Sbjct: 1001 SHSVLELSTKPSDLKGDAMPEPLTLEKIEPQSTH--LAFVNNVTSSHLWVNLSPNVRGRI 1058

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
               +++ + S++   ++ F +G A+   VL+++ +K+ + L  R      +    ++S D
Sbjct: 1059 KATEASDDLSKVASLEKSFPVGCALQVRVLAVDADKERVDLSAR------TGAAPELSWD 1112

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             +Q    +G ++ G+++K+      + VQ+   + G VH  +L +         YDE   
Sbjct: 1113 KVQ----QGMVLPGKVTKV--NDRQVFVQLSELVAGPVHLVDLAD--------DYDEA-- 1156

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
            +PL+ + + + V+  ++EI ++ +    + LS+R S           L++ +    K + 
Sbjct: 1157 NPLA-HSKNEIVRVAIVEIDKSNK---KLRLSMRPS---------RVLNSSLPVKDKEIT 1203

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            K   L    +V+G+V+NV+ KG F+ L     A V + +LSD Y++  ++ F + +LV G
Sbjct: 1204 KGTKLEVGDVVRGFVRNVSDKGLFVSLGGDAVALVQIKDLSDSYLKDWKEHFQVDQLVKG 1263

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            R++SV     R+ ++LK S        ++  +S+L  G IV G++++VE +G FI I+ +
Sbjct: 1264 RIVSVA--DGRLRMSLKESVVEK-DFVKLTTISDLKEGQIVTGRVRKVEEFGAFIAIDRS 1320

Query: 1367 -NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
             NL GLCH SE+++  V + +T+Y  G++VK ++LKVD E++RISLG+K SYFK+   + 
Sbjct: 1321 DNLSGLCHRSEMADRAVKDAKTLYNEGDRVKARVLKVDLEQKRISLGLKPSYFKDGEADD 1380

Query: 1426 QMSS--------------EEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE-DGGS-- 1468
                              EE  DE + + G     +LL   S A +D + ESE DGGS  
Sbjct: 1381 VDVDTDDDEDGGAALDGREESEDEKMSDAGG----ALLIAGSDA-EDSEDESEVDGGSDV 1435

Query: 1469 -LVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEER 1527
             +  A  E  A+       LD    D            +        +     KK K+ R
Sbjct: 1436 EMAEAPAEGLAA-------LDAGGFDWTADALDADDKANADIADGPPS-----KKAKKRR 1483

Query: 1528 EQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1587
            E +    +   L+ + P+T  ++ERL+   P+SS +WI YMA  + + D+  AR +AERA
Sbjct: 1484 EPQGIVDKTAELDINGPQTSSDYERLLLGQPDSSELWIAYMASQMQVNDLASARQVAERA 1543

Query: 1588 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1647
            ++TINI+EE EKLN+W+AY NLE  YG    E V +VF+RA  Y D ++VH  L  +Y +
Sbjct: 1544 IKTINIKEETEKLNVWIAYLNLEVAYGT--AETVDEVFKRACTYNDDQEVHERLASIYIQ 1601

Query: 1648 TEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLP----- 1699
            + ++K ADEL  +++KK+   S  VW      L     Q +  +A+++RA   L      
Sbjct: 1602 SGKHKEADELFERILKKYGSRSPHVWTNYAHFLHVTAGQPDRARALLKRATQVLSSSTTV 1661

Query: 1700 --RHKHIKFISQTAILEFKNGVADR--GRSMFEGILSEYPKRTDLWSIYLDQEI------ 1749
                 ++  + + A LEF++   DR  GR++FE +L+ YP++ DLW+  LD E       
Sbjct: 1662 AGNQVYLSLLPKFAALEFRSPHGDREQGRTLFESLLAAYPRKFDLWNQLLDLETSPSSLS 1721

Query: 1750 -----RLGDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803
                       ++R LFER   +  L P++ K  F+++ ++E+  G+ +  E V  KA+E
Sbjct: 1722 SSPAAAADQAVVVRDLFERGSKVKGLKPRQAKAWFRRWAKWEEEHGDAKSRERVSAKAVE 1781

Query: 1804 YV 1805
            + 
Sbjct: 1782 WA 1783



 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 218/761 (28%), Positives = 348/761 (45%), Gaps = 59/761 (7%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGL--------------RGLARAADALDPILDNEIEANE 54
           G  + G V  +N  D+ + LP  L              R L  +A+  D   ++E E  +
Sbjct: 145 GSLVLGTVCAINPLDIALALPNNLVGHVPITAISETLTRRLQASAEKEDDAGESEDENAD 204

Query: 55  DNLLPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 113
           D  L ++FH+GQ V   V   LD+      +R I LSL  S    G+S + + E   L A
Sbjct: 205 DVDLKSLFHMGQYVRAYVASTLDESTPGKSRRHIELSLEPSHANTGISEQDLVEHCTLMA 264

Query: 114 YVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVY 170
            V S+EDHG+++  G+   S  GFLPR  L ++   D ++PG +L  VV       KVV 
Sbjct: 265 SVVSVEDHGFVMDIGISESSVKGFLPRKQLDKSIPEDSIQPGSVLLCVVTGKAANGKVVQ 324

Query: 171 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
           LS+ PD +        +  +I   +PG      +  + ++GV+   + +   T D+ H  
Sbjct: 325 LSTLPDRLGNPKHTPSEATTIGSFLPGTAADVLISEVSQHGVIGKVMGHLDVTADLVHSG 384

Query: 231 NTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRAPPSHVKVGD---- 284
                 +  + Y    +V ARI+   PT++   +G++L P++L  R P + ++ G     
Sbjct: 385 AGPDGVDIVDKYKVGSRVKARIICTFPTAKMPKLGISLLPHVLSLR-PKTTIQDGQEALP 443

Query: 285 --------IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYK 333
                   I DQ  V RV+ G+GL +D+    V  P +V IS V + +V  L      YK
Sbjct: 444 TQILAHSAIVDQCTVQRVEPGIGLYVDVGVQGV--PGFVHISRVKDGKVDSLFENSGPYK 501

Query: 334 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK----VIAVDSFGA 389
            GS    R++G+   +G+    L+    E       DV  G VV G     VI  D  G 
Sbjct: 502 IGSVHPGRVVGYNSFDGMFLLSLEKHVLEQPFLRIEDVPVGAVVPGVVEKLVINQDGLGG 561

Query: 390 -IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVK 446
            IV+   G+  L P  H+++  +  P KKF+ G ++  RVL       +I +T KKTLV 
Sbjct: 562 LIVRIADGISGLVPEAHLADVHLQHPEKKFREGMKVKARVLSTNPAMHQIRLTLKKTLVN 621

Query: 447 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 506
           S+   + SY E    L   G I  + +HG  V+FY  ++GF P SE+      +P   + 
Sbjct: 622 SEAPPIKSYDELAVGLQAPGTIVSVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPKEHFR 681

Query: 507 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVV 562
           VGQ V   ++S  P + R+ +S         E  L    +++G LVS  V   T + + V
Sbjct: 682 VGQTVSIYVLSFDPDASRLIVSCKDPSAFGLEKQLALKKLQVGQLVSAKVTQKTEDDIFV 741

Query: 563 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLLSAK 617
             +A    K  +P  HL D  +  +  +S +K         +L+VL+ NE   ++ LS K
Sbjct: 742 E-LADSSLKAILPVGHLTD--KSVSKTQSALKKIHVNQTLSELVVLEKNEGRRSITLSHK 798

Query: 618 YSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 675
            SL+ ++++  L +          V G+V NI  T  FV+F G+LT   P+S      R 
Sbjct: 799 PSLVQASKEGKLLAHIDDARLGDQVPGFVRNITATAAFVQFAGKLTALLPKSMMPSDVRD 858

Query: 676 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
             S   +  QS+   I  ++ + GR+ +++  +   +   S
Sbjct: 859 KPSFGMHKSQSLVVKITSIDKDLGRLVVAIPSAAGEAAKTS 899



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 125/279 (44%), Gaps = 40/279 (14%)

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            G+GGL+V+I   + G V    L ++ +  P     E +F       EG  VK +VL    
Sbjct: 558  GLGGLIVRIADGISGLVPEAHLADVHLQHP-----EKKF------REGMKVKARVLS--- 603

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
            T      + L+L+ +L              V++    ++  ++L+  +   G + +V   
Sbjct: 604  TNPAMHQIRLTLKKTL--------------VNSEAPPIKSYDELAVGLQAPGTIVSVLQH 649

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G  +    +L   + +S +S+ Y+  P++ F +G+ V+  VLS +P + R+ V+ K  D 
Sbjct: 650  GAIVQFYGQLRGFLPVSEMSEAYIHDPKEHFRVGQTVSIYVLSFDPDASRLIVSCK--DP 707

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                  +   L  L VG +V  ++ +     +F+ + +++L  +  V  L++  V   ++
Sbjct: 708  SAFGLEKQLALKKLQVGQLVSAKVTQKTEDDIFVELADSSLKAILPVGHLTDKSVSKTQS 767

Query: 1388 IYRAGEKVKVK-------ILKVDKEKRRISLGMKSSYFK 1419
              +   K+ V        +L+ ++ +R I+L  K S  +
Sbjct: 768  ALK---KIHVNQTLSELVVLEKNEGRRSITLSHKPSLVQ 803



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 172/861 (19%), Positives = 325/861 (37%), Gaps = 168/861 (19%)

Query: 6    ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVG 65
            ++ G++  G +  V +   ++   G LRG    ++  +  + +  E          F VG
Sbjct: 633  LAVGLQAPGTIVSVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPKEH---------FRVG 683

Query: 66   QLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLY---KGLSLETVQEGMVLTAYVKSIEDHG 122
            Q VS  VL  D D       ++ +S +    +   K L+L+ +Q G +++A V    +  
Sbjct: 684  QTVSIYVLSFDPDAS-----RLIVSCKDPSAFGLEKQLALKKLQVGQLVSAKVTQKTEDD 738

Query: 123  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVYLSSD 174
              +     S    LP  +L + S    +  L        L + VV   +  R+ + LS  
Sbjct: 739  IFVELADSSLKAILPVGHLTDKSVSKTQSALKKIHVNQTLSELVVLEKNEGRRSITLSHK 798

Query: 175  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 234
            P  V    +K+ K ++    +    +  +V   + N    +    F G +     ++  P
Sbjct: 799  PSLVQ--ASKEGKLLA---HIDDARLGDQVPGFVRNITATAAFVQFAGKLTALLPKSMMP 853

Query: 235  T-TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR 293
            +    K  +  HK   ++ L V                                  K+  
Sbjct: 854  SDVRDKPSFGMHK---SQSLVV----------------------------------KITS 876

Query: 294  VDRGLG-LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 352
            +D+ LG L++ IPS   +  A  T    AE+ V  ++     GS           ++ LA
Sbjct: 877  IDKDLGRLVVAIPSA--AGEAAKTSQKNAEKAVNSVDDSI--GS-----------IDDLA 921

Query: 353  TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 412
             G L  +  + +  T  +V+    ++G++     F      P               +  
Sbjct: 922  VGKLTKARVKSVKETQLNVQIADNIQGRIDVSQIFDKWEDIP---------------DPK 966

Query: 413  KPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
            +P K+FK G  L  RVLGV   R    + ++H+ +    +L+   S  +  D +     +
Sbjct: 967  RPLKRFKAGDILPVRVLGVHDARNHRFLPISHRSSHSVLELSTKPSDLKG-DAMPEPLTL 1025

Query: 469  TKIEKHGCFVRFYNGVQG------FAP------RSELGLDPGCEPSSM---YHVGQVVKC 513
             KIE     + F N V         +P      ++    D   + +S+   + VG  ++ 
Sbjct: 1026 EKIEPQSTHLAFVNNVTSSHLWVNLSPNVRGRIKATEASDDLSKVASLEKSFPVGCALQV 1085

Query: 514  RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 573
            R+++      R++LS           D V+ G ++ G V  V  N   V+V       G 
Sbjct: 1086 RVLAVDADKERVDLSARTGAAPELSWDKVQQGMVLPGKVTKV--NDRQVFVQLSELVAGP 1143

Query: 574  IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS-LINSAQQLP-- 628
            +    LAD  + A  +        E  ++ +++ + SN  L LS + S ++NS+  LP  
Sbjct: 1144 VHLVDLADDYDEANPLA---HSKNEIVRVAIVEIDKSNKKLRLSMRPSRVLNSS--LPVK 1198

Query: 629  ----SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
                +  + +    VV G+V N+ + G FV   G            D    D  + + V 
Sbjct: 1199 DKEITKGTKLEVGDVVRGFVRNVSDKGLFVSLGGDAVALVQIKDLSDSYLKDWKEHFQVD 1258

Query: 685  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
            Q V+  I+ V    GR+ +SLK+S         +++ F+    I+ L+            
Sbjct: 1259 QLVKGRIVSVAD--GRLRMSLKESV--------VEKDFVKLTTISDLKE----------- 1297

Query: 745  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQA 797
                 G ++ G+V +  +FG  ++ +   ++ G     ++A   V+        G  ++A
Sbjct: 1298 -----GQIVTGRVRKVEEFGAFIAIDRSDNLSGLCHRSEMADRAVKDAKTLYNEGDRVKA 1352

Query: 798  AILDVAKAERLVDLSLKTVFI 818
             +L V   ++ + L LK  + 
Sbjct: 1353 RVLKVDLEQKRISLGLKPSYF 1373



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 138/315 (43%), Gaps = 40/315 (12%)

Query: 152  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 211
            G  LQ  V ++D  ++ V LS+      +        +S D +  GM++  +V  + +  
Sbjct: 1080 GCALQVRVLAVDADKERVDLSARTGAAPE--------LSWDKVQQGMVLPGKVTKVNDRQ 1131

Query: 212  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 271
            V +       G V +  L + +   N    +++++ V   I+ +D +++ + L++ P  +
Sbjct: 1132 VFVQLSELVAGPVHLVDLADDYDEAN-PLAHSKNEIVRVAIVEIDKSNKKLRLSMRPSRV 1190

Query: 272  HNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
             N + P         + ++VGD+      VR     GL + +    V   A V I D+++
Sbjct: 1191 LNSSLPVKDKEITKGTKLEVGDVV--RGFVRNVSDKGLFVSLGGDAV---ALVQIKDLSD 1245

Query: 323  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGM 375
              ++  ++ ++    V+ RI+       +A G L+ S  E +V        T SD+K G 
Sbjct: 1246 SYLKDWKEHFQVDQLVKGRIVS------VADGRLRMSLKESVVEKDFVKLTTISDLKEGQ 1299

Query: 376  VVKGKVIAVDSFGAIVQF--PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
            +V G+V  V+ FGA +       +  LC    M++  +      +  G  +  RVL V  
Sbjct: 1300 IVTGRVRKVEEFGAFIAIDRSDNLSGLCHRSEMADRAVKDAKTLYNEGDRVKARVLKVDL 1359

Query: 432  KSKRITVTHKKTLVK 446
            + KRI++  K +  K
Sbjct: 1360 EQKRISLGLKPSYFK 1374


>gi|303291157|ref|XP_003064865.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453891|gb|EEH51199.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 2229

 Score =  347 bits (889), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 250/840 (29%), Positives = 402/840 (47%), Gaps = 140/840 (16%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA----------- 52
           + +  G KL GVV +VN+  + + LP GLRG    A+A D  +  + +            
Sbjct: 93  KTLRVGTKLMGVVVDVNDAGMSLSLPNGLRGSVTRAEASDAFVAAKKKKKTTKMTKMKKK 152

Query: 53  ---------------------------NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKR 85
                                           L  +F VGQ++  +V++    K + G +
Sbjct: 153 TADSSESESESESESDESDSDDDDEALTNAEPLAALFKVGQILRAVVVR--SGKGKSGGK 210

Query: 86  KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAEN 144
           +I LS RLS +  G++ + + +G  + A V  +E HG++L+FG+  +  GFLPR ++   
Sbjct: 211 RIDLSTRLSRVCDGVAKDALVDGAAVPACVTGVEAHGFVLNFGIDDAPIGFLPRKSVRAE 270

Query: 145 SGIDVKPGLLLQGVV----------------------RSIDRTRKVVYLSSDPDTVSKCV 182
               +  G +L  V+                      R++    +VV  ++D   VS  V
Sbjct: 271 MASSLARGAILDVVINASAGPGGDGGNGEDGGGKEKKRALVTNSRVVQCTADAKRVSSAV 330

Query: 183 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN---------TF 233
           T++    S+  L+PGM+V+ RV+++L +G+ ++F+TYFT T+D FHL +           
Sbjct: 331 TRESDYTSMQSLLPGMLVNARVRAVLSDGISVNFMTYFTATIDAFHLGDGKGTDGKHLNG 390

Query: 234 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA-------------PPSHV 280
           PT +    +    +  AR+LFVD  ++ +GLTL P+L+  +A             P SH+
Sbjct: 391 PTPDVSKTHKVGDRCRARVLFVDADAKRIGLTLRPHLVSPQAVSVQPSSTETGGDPLSHL 450

Query: 281 ---KVGDIYDQSKVVRVDRGLGLLLDIP-STPVSTP--------------------AYVT 316
              K G  YD + V RVD  +G+LL++P S   + P                     YV 
Sbjct: 451 NLPKPGTSYDAAIVRRVDANVGVLLELPPSGAAAAPTDDESRMGKQSYSPPKGACLGYVH 510

Query: 317 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV 376
           ISD  ++ + +LEKK+K G+ VR R++G R ++G+AT   K +  E    +  ++ PGM 
Sbjct: 511 ISDATDDHIERLEKKFKVGATVRARVIGRRVVDGVATASCKKTVVEQPFLSLDELTPGMK 570

Query: 377 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSK 434
           VKG+V+AV+ +GA+++   GVKAL P  H+S+        K   GA L FRVL   V   
Sbjct: 571 VKGEVVAVEPYGAVIKLAPGVKALLPPHHVSDIPGRTTNAKVCPGARLNFRVLSVDVARS 630

Query: 435 RITVTHKKTLVKSKLAILSSYAEAT--DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 492
           R TVT KKT++ S L ++++  +AT      THG +T +E +G FV  Y  ++G A   +
Sbjct: 631 RATVTRKKTILNSDLDVIATMEDATRAGGATTHGVVTGVEPYGVFVSLYGALRGLAGAQD 690

Query: 493 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM------------------MKPT 534
           LGL PG  P+  + VGQ V+ R++ +     ++ LS                        
Sbjct: 691 LGLAPGQTPTEAFQVGQCVRARVIRADNGPGKLKLSLAPGGSGDGVVLHDDEGGGGGGGG 750

Query: 535 RVSEDDLVKLGSLV-SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI 593
           R+ +      G+++ S VV  V  +   V V   G   G I   H++DH      + +  
Sbjct: 751 RLDDVGAPPPGTIIESAVVKRVDADTGNVLVTLPGGVPGVITAAHVSDHPVTGAALVATY 810

Query: 594 KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIE-T 650
            P      L+ L+ +    +LS K SL+ +A+   LP+  + +   +   GYV +  +  
Sbjct: 811 APDDAIGPLVALEAKPRRSILSRKTSLVTAARSDALPASVADVVVGASYPGYVASATQNA 870

Query: 651 GCFVRFLGRLTGFAPRSKAVDGQR---ADLSKTYYVGQSVRSNI--LDVNSETGRITLSL 705
           G FVRFLGRLTG AP S+ V G R   AD  + +  GQSVR+ +  +D   +  R++LSL
Sbjct: 871 GVFVRFLGRLTGLAPPSQLVPGARGGDADPEECFAPGQSVRARVTAVDATVDPPRLSLSL 930



 Score =  277 bits (709), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 137/319 (42%), Positives = 198/319 (62%), Gaps = 25/319 (7%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--APRTPDEFERLVRSSPNSSFVWIKYMA 1569
            ++  ++  K +EK  RE E+   E+ L +    AP T  E+E+L+  +P SS+ W+K++A
Sbjct: 1904 EKPKSKREKAREKANREMELHRKEQALRDAADRAPETAAEYEKLIMQTPRSSYAWLKFVA 1963

Query: 1570 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-PEEAVVKVFQRA 1628
            F +S+   + AR+  ERAL+ I   EE E++NIW+AY NLEN++G P P EA  + F+RA
Sbjct: 1964 FHVSVGAYDDARACLERALKAIPASEEEERMNIWIAYLNLENKHGKPSPVEATERTFKRA 2023

Query: 1629 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-------SCKVWLRRVQRL-- 1679
             Q  +PKK+HL L G++ER+  +  A  +L + +KKF         S KVWL  V+    
Sbjct: 2024 CQVANPKKLHLTLAGVHERSGNDANARRVLAEAVKKFSQARSSITLSAKVWLAHVRAAIL 2083

Query: 1680 -LKQQQEG------------VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
             L     G            V+  + RA  +LP+ KH+K + QTA+ EF+ G  +RGR+M
Sbjct: 2084 SLDAANPGTGTGGGAVDADVVKRALDRATQALPKRKHVKLMVQTALCEFREGRPERGRTM 2143

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1786
            FE IL  YP+RTD+WS Y+DQEI+ GD D  RGL ERA  L L PK MKFLFKK+L++E+
Sbjct: 2144 FESILRNYPRRTDIWSTYVDQEIKCGDDDRTRGLLERATHLELTPKSMKFLFKKFLDFER 2203

Query: 1787 SVGEEERIEYVKQKAMEYV 1805
              G +E++E VK+ AM+YV
Sbjct: 2204 KRGNKEKVEKVKRMAMDYV 2222



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)

Query: 750  GSVIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVES----------GSVIQAA 798
            GS I   VH + ++GV++   +  SD+   +  HQ   A  +           G+ +   
Sbjct: 1018 GSSISCVVHATREYGVLMDVPDVDSDLVALMAFHQTPAAADDDDDDAAPPPDEGTKVNGV 1077

Query: 799  ILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH-----------Q 847
            +LDV++ + +VD+  +   +   +   S ++ + KK +     D               +
Sbjct: 1078 VLDVSRRDGVVDVGARPGLLAMMKPGPSPKKTRSKKTRGGGGGDASTTYLPPPRPKKGTE 1137

Query: 848  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 881
            TV A+VE+VK  Y+VLSLP++  +IGY +    N
Sbjct: 1138 TV-AVVELVKPEYVVLSLPKHGGAIGYCAARSVN 1170



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 107/483 (22%), Positives = 194/483 (40%), Gaps = 92/483 (19%)

Query: 964  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1023
            G +HI++  DD    +E L   FK+G TV AR+I +     +  +   +  ++   L++ 
Sbjct: 507  GYVHISDATDDH---IERLEKKFKVGATVRARVIGRRVVDGVATASCKKTVVEQPFLSLD 563

Query: 1024 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1083
            E+           + G +V G V  V+   A++ ++  +KA L        P  + +   
Sbjct: 564  EL-----------TPGMKVKGEVVAVEPYGAVIKLAPGVKALL-------PPHHVSDIPG 605

Query: 1084 RFHIGKAVTG-----HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1138
            R    K   G      VLS++        V R        KT+  S+ ++   + +    
Sbjct: 606  RTTNAKVCPGARLNFRVLSVD--------VARSRATVTRKKTILNSDLDVIATMEDATRA 657

Query: 1139 GGRISKILSGVGGLVVQIGPH-----LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            GG  +       G+V  + P+     LYG      L+ +  +  L G   GQ  P   + 
Sbjct: 658  GGATTH------GVVTGVEPYGVFVSLYG-----ALRGLAGAQDL-GLAPGQT-PTEAFQ 704

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS- 1252
             GQ V+ +V+   R   G   ++LSL        S +   L  D    G    +++D+  
Sbjct: 705  VGQCVRARVI---RADNGPGKLKLSLAPG----GSGDGVVLHDDEGGGGGGGGRLDDVGA 757

Query: 1253 --PNMIVQGYV---KNVTSKGCFIMLSRKLDAKVLLSNLSD------GYVESPEKEFPIG 1301
              P  I++  V    +  +    + L   +   +  +++SD        V +   +  IG
Sbjct: 758  PPPGTIIESAVVKRVDADTGNVLVTLPGGVPGVITAAHVSDHPVTGAALVATYAPDDAIG 817

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ------IKRVE 1355
             LVA   L  +P  +R  ++ KTS   TA++S+    S   V D+V+G           +
Sbjct: 818  PLVA---LEAKP--RRSILSRKTS-LVTAARSDALPAS---VADVVVGASYPGYVASATQ 868

Query: 1356 SYGLFITIENTNLVGLCHVSEL---SEDHVDNIETIYRAGEKVKVKILKVDK--EKRRIS 1410
            + G+F+      L GL   S+L   +     + E  +  G+ V+ ++  VD   +  R+S
Sbjct: 869  NAGVFVRFLG-RLTGLAPPSQLVPGARGGDADPEECFAPGQSVRARVTAVDATVDPPRLS 927

Query: 1411 LGM 1413
            L +
Sbjct: 928  LSL 930


>gi|74183408|dbj|BAE36581.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score =  345 bits (886), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 278/932 (29%), Positives = 464/932 (49%), Gaps = 64/932 (6%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
           +++  GM++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 78  ESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLL 137

Query: 58  -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
            LP +F  G LV C+V  LD    E GK+ + LS+    + K LS + ++ GM+LT  V 
Sbjct: 138 RLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVS 195

Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
           S+EDHGY++  G+     FL      E     N G   K G  L  VV  +     VV L
Sbjct: 196 SLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSL 255

Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
           S +   VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+ 
Sbjct: 256 SVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE- 314

Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                     Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D 
Sbjct: 315 ----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDD 370

Query: 289 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
             V    +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  +
Sbjct: 371 VPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQM 427

Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
           + LA   L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++
Sbjct: 428 DELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD 487

Query: 409 FEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
             +  P KK+  G E+  RVL    ++K++ +T KKTLV SKL++++ Y  A   L THG
Sbjct: 488 IMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHG 547

Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            I +++ +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ 
Sbjct: 548 VIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERML 607

Query: 527 LSF-MMKPTRVSEDDL---------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
           LSF ++  +R  +  +         V++G LV   V   T   + V ++    +   +PT
Sbjct: 608 LSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPT 666

Query: 577 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
            HL+DH  +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I
Sbjct: 667 PHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEI 726

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            P  ++ G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V
Sbjct: 727 QPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNV 786

Query: 695 NSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIG 750
           +    R+ LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G
Sbjct: 787 DESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPG 846

Query: 751 SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
            V++  VHE   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V
Sbjct: 847 MVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEV 906

Query: 810 DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
            +SL    ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  
Sbjct: 907 HVSLHQDLVNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETG 948

Query: 870 HSIGYASVSDYN-TQKFPQKQFLNGQSVIATV 900
           H + ++ +S  N T  F  ++   GQ V  T+
Sbjct: 949 HLVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 980



 Score = 77.4 bits (189), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 106/467 (22%), Positives = 190/467 (40%), Gaps = 73/467 (15%)

Query: 475 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFM 530
           G   R  +GV  +A  S L        +  +  G   KCRI+  S +     ++L  S +
Sbjct: 381 GAIFRLKDGVLAYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSII 440

Query: 531 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 590
             P     D  +K+G++V G V  + P  ++V V  +   KG +P+ HLAD      +MK
Sbjct: 441 AAPFLRYHD--IKIGTVVKGTVLAIKPFGILVKVGEQ--IKGLVPSMHLAD-----IMMK 491

Query: 591 SVIK---PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 646
           +  K   PG E   ++L+ D E+  L+++ K +L+ S   L +      P    HG +  
Sbjct: 492 NPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHGVIIR 551

Query: 647 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           + + GC V+F   + G  P+ +       D    +Y GQ V+  +L       R+ LS +
Sbjct: 552 VKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611

Query: 707 QSCCSSTDASFMQEHFLLEE---KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 763
                           LL +   K   ++SS+     ++      IG +++ KV E    
Sbjct: 612 ----------------LLSDSRPKDPGVESSQKKTGAVR------IGQLVDVKVLEKTKT 649

Query: 764 GVVVSFEEHSD-------------VYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD 810
           G+ V+   H+                G + HH L     ++G  +   +L ++++ER + 
Sbjct: 650 GLEVAILPHNTPAFLPTPHLSDHAANGPLLHHWL-----QTGDTLHR-VLCLSQSERHIL 703

Query: 811 LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 870
           L  K   +      ++    Q  K   E    +     +   V+ +KE  + +  P    
Sbjct: 704 LCRKPALV------STVEGGQDPKSLSEIQPGM----LLIGFVKCIKEYGVFVQFPSGLS 753

Query: 871 SIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK 917
            +   ++        P + F+ GQ+V+A V  +  S    R+LL L+
Sbjct: 754 GLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQ--RMLLSLR 798



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1324 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1383
             +   T+  S I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 523  KT-LVTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580

Query: 1384 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 581  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 147/708 (20%), Positives = 271/708 (38%), Gaps = 99/708 (13%)

Query: 631  ASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVR 688
            A  + P  ++ G V ++ + G  V   +G    F    KA +  R  +    + VGQ + 
Sbjct: 181  ADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLT 240

Query: 689  SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 748
              + +V S  G ++LS++ S  SS  A+                       E  W    +
Sbjct: 241  CVVEEVKSNGGVVSLSVEHSEVSSAFAT----------------------EEQSWNLNNL 278

Query: 749  IGSV-IEGKVHESNDFGVVVSFEEH-SDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 806
            +  + ++ +V +   FG+ ++F      +  F+        +  S   ++A IL V    
Sbjct: 279  LPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLEPKKMGSYSSNQTVKACILCVHPRT 338

Query: 807  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 866
            R+V LSL+ +F+   R              R + + LG       +    K    +  L 
Sbjct: 339  RVVRLSLRPIFLHPGRPLT-----------RISYQQLGAVLDDVPVQGFFKNAGAIFRL- 386

Query: 867  EYNHSIGYASVSDYNTQK--FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 924
              +  + YA VS  +  K  F  + F  G +    ++   S      LL L K+I     
Sbjct: 387  -KDGVLAYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDY-SQMDELALLSLRKSIIAAPF 444

Query: 925  SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 984
                  K      +G++V+  +  IKP  + +K G    G +    + D    +++N   
Sbjct: 445  LRYHDIK------IGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD---IMMKNPEK 495

Query: 985  NFKIGQTVTARII-----AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1039
             +  G  V  R++     AK     +KK+ +     K S++T  E G+K   +   V I 
Sbjct: 496  KYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTS---KLSLITCYE-GAKPGLQTHGVIIR 551

Query: 1040 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1099
             +  G + K  N+   L     L  Q            + + +  F+ G+ V   VLS  
Sbjct: 552  VKDYGCIVKFYNDVQGLVPKHELSTQ-----------HIPDPETVFYTGQVVKVAVLSCE 600

Query: 1100 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1159
              K+ + L  R   D         S+      +  G +V  ++  +     GL V I PH
Sbjct: 601  PSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKV--LEKTKTGLEVAILPH 658

Query: 1160 -LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
                 +    L +   + PL  +     D L           +VL +S++ R   H+ L 
Sbjct: 659  NTPAFLPTPHLSDHAANGPLLHHWLQTGDTLH----------RVLCLSQSER---HILLC 705

Query: 1219 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
             + +L  +S+             G+  + + ++ P M++ G+VK +   G F+     L 
Sbjct: 706  RKPAL--VSTVEG----------GQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLS 753

Query: 1279 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
                 + +SD +V +P + F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 754  GLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSD 801


>gi|346977319|gb|EGY20771.1| rRNA biogenesis protein RRP5 [Verticillium dahliae VdLs.17]
          Length = 1790

 Score =  345 bits (886), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 327/1254 (26%), Positives = 596/1254 (47%), Gaps = 143/1254 (11%)

Query: 612  LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
            + L+ K +L+NS   +      +       G + +I   G  + F   + G+ P S+  +
Sbjct: 612  MRLTLKKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSE 671

Query: 672  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 731
                D  + + VGQ V  +IL+V+ E  ++ +S K               F L+++ A+ 
Sbjct: 672  AFIQDPKEHFKVGQVVNVHILEVDPENQKLLVSCKDPSA-----------FGLDKQAAL- 719

Query: 732  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 791
                         +   +GS++ GKV + +D  V V  +  S++   +   QL   T +S
Sbjct: 720  -------------KALSVGSIVSGKVIQKSDDDVHVELD-GSNLKAILPLGQL---TDKS 762

Query: 792  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA---QKKKRKREASK------- 841
             +  Q+A+  +   + L DL    + +D+    N  R+A     K    EA K       
Sbjct: 763  ANKSQSALKRIHMGQTLTDL----LVLDK----NERRRAITLSSKPSLVEAGKTGKLICT 814

Query: 842  --DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQKQFLNGQSV 896
              D  V   V   +  ++   +++        + + +   + D   + F  ++    QS+
Sbjct: 815  YADAKVGAEVPGFISSIRPGAVLVRFGGNLVGVMFKTRLPIEDQEKEAFGLRK---DQSI 871

Query: 897  IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS---------YDV--GSLVQAE 945
               + A+    T    L++    +E  ++ +K  K+K S          D+  G +V+A+
Sbjct: 872  TVRIRAIDLERTR---LVVDPLTAELPSNEAKPKKEKESARPQAHGPVQDITFGQIVEAK 928

Query: 946  ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARIIAKSNKP 1003
            I  I   +L ++      GR+ I+++ D   N+   E   S FK G+T+  R I   +  
Sbjct: 929  IVGIHDTQLNVETADKVQGRVDISQIFDSWDNIKDPEEPLSQFKKGETIRVRAIGLHDSK 988

Query: 1004 DMK------KSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1055
            D +      +S+  + E + K S +   E+   L  E  D+ +G     +V         
Sbjct: 989  DHRFLAFSHRSYNSVLEFTAKASDIEADEL-KPLSLE--DLQVGSTHVAFVNNASRNGLW 1045

Query: 1056 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1115
              IS  ++ ++  +D + + S++ +    F IG A+   V++++ ++ +L L  R     
Sbjct: 1046 TNISPVVRGRINAMDVSDDTSKMNDVINNFPIGTALKVRVIAVDAKRGVLDLSAR----- 1100

Query: 1116 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1175
             SD +  ++ D+    I    ++ G + K+      ++V++G ++ G VH  ++ +    
Sbjct: 1101 -SDSSAAVTWDS----IKPNQVLAGCVVKV--NERQIMVKLGSNVAGHVHLVDMSD---- 1149

Query: 1176 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1235
                  D G  + L  YD+G  ++  V+E+ ++ +    V LS R S       NSS   
Sbjct: 1150 ------DFGDVNTLK-YDKGDAIQVSVVEVDKSNK---RVRLSTRPS----RVLNSSSPI 1195

Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
            TD       +  ++ +     ++G+VK+V  KG F++L   + A V +SNLSD +++  +
Sbjct: 1196 TD-----PEITSVKQVVSGSTIRGFVKHVADKGVFVLLGGNVSALVKISNLSDRFLKEWK 1250

Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1355
            + F + +LV GRVLSV+  + +VE++LK+S     +   +    ++    IV G+I++VE
Sbjct: 1251 EHFQVDQLVKGRVLSVDEGAGQVELSLKSS-VVDDNYKPLKTYKDIKPNQIVTGKIRKVE 1309

Query: 1356 SYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             +G FI ++ + N+ GLCH SE+++  V++   +Y+AG+ VK K+L +D+ K+RIS G+K
Sbjct: 1310 DFGAFIVVDGSDNVSGLCHRSEMADSPVEDARKLYKAGDVVKAKVLTLDRNKKRISFGLK 1369

Query: 1415 SSYFKNDADNLQMSSEEES----DEAIEEVGSYNRSSLLENSSVAVQDMDMES-EDGGSL 1469
             +YF +D D   M   E +    D   E+    +    L     +++ M  ++ ED    
Sbjct: 1370 PAYFDDDVD---MDEGEGAALDSDNEEEDEVDSDEGEDLAEGGASIKFMGTDNLEDSEDE 1426

Query: 1470 VLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHT-----DEAKTIDEKNNRHAKKKEK 1524
                          +V++  EQ  + NG     G        E ++   KN+   +K+ K
Sbjct: 1427 QDNADSDEDVDEDGDVDMSREQNGLSNGKYDWAGDAFDDSDKETRSAPAKNSASKQKETK 1486

Query: 1525 EEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIA 1584
            + ++ EI+      L+   P+T  ++ERL+   P+SS +WI YMA  + ++++ KAR IA
Sbjct: 1487 KPKKDEIQIDRTAALDVHGPQTASDYERLLLGQPDSSALWIAYMALQMQVSELTKAREIA 1546

Query: 1585 ERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1644
            ERA++TINIRE+ EKLN+W+AY NLE  YG   +  V +VFQRA QY D +++H  L  +
Sbjct: 1547 ERAIKTINIREQTEKLNVWIAYLNLEVAYGT--KTTVEEVFQRACQYNDDQEIHERLATI 1604

Query: 1645 YERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRH 1701
            Y ++ ++K ADEL    + KF   +  +W      L     Q +  +A++ RA  +L   
Sbjct: 1605 YIQSGKHKKADELFQATVAKFGSKNPNLWTNYAHFLHATLNQPDRARALLPRATQALGEQ 1664

Query: 1702 KHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLI 1757
                 +++   LEF+  NG A+RGR+ FE +L+ +PKR DLW+  +D E+     D   +
Sbjct: 1665 HTAALMAKFGSLEFRSPNGDAERGRTTFETLLATWPKRFDLWNQLVDLEMAAPGADATAV 1724

Query: 1758 RGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            R +FER   +  L  ++    FK++ E+E     + + E V  KA E+V +  A
Sbjct: 1725 RDVFERGTKVKGLKAQRAMKWFKRWAEWEGKTDPKGK-ERVMAKAAEWVTAAKA 1777



 Score =  187 bits (474), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 307/1290 (23%), Positives = 543/1290 (42%), Gaps = 158/1290 (12%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL------ 57
            + ++ G  + G V+ ++  +L I LP  L G    A A+  ++  +I+   +        
Sbjct: 142  KRLAKGSVVLGQVSAISHHNLTIALPNNLSGNVSIA-AISDVVTAKIQQAAEASDDDDDS 200

Query: 58   -----------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ 106
                       L ++F VGQ V   V+   + +    K  I LSLR      G+S   V 
Sbjct: 201  ADEGDDDDDIELNSLFEVGQYVRAYVISTKEGEGSGKKNHIELSLRPEDANSGMSKNDVV 260

Query: 107  EGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSID 163
                + A V S++DHGY +  G+ +    GFLP+ ++ +E   + ++PG +   +V+S+ 
Sbjct: 261  ANATVMAAVTSVQDHGYEMELGVDNKKLKGFLPKKDVGSEVDELRLQPGAVSLCLVKSV- 319

Query: 164  RTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGT 223
             + K+  L  D + + K      +  +++   PG +V   V S    G++   L +   T
Sbjct: 320  -SGKIAQLCLDSEKMGKVDNIATEATTVNTFQPGTVVDVLVTSTTGRGLLGKILGHLPVT 378

Query: 224  VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRA------ 275
             D+ H        +    Y    +V AR++   P ++   +G++L P+++  +A      
Sbjct: 379  ADLIHSGAGPDAVDLDAKYKIGSRVKARVICTFPNAKNPKLGISLLPHVVKLQAKKAGKG 438

Query: 276  ----PPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
                PP +V  +    D+  V +V+  +GL +D+    +S   +V IS V + +V  L +
Sbjct: 439  GQAKPPLNVLPIAARVDKCTVRKVEPEIGLYVDVGVAGLS--GFVHISKVKDGKVEALYE 496

Query: 331  K---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG-----MVVKGKVI 382
                +KEGS  R R++G+   +G+     + +  E       DV  G     M+ K  V 
Sbjct: 497  SSGPFKEGSVHRGRVIGYSTFDGMYLMTFEPTIIEQQFIRLEDVPAGEIVSCMIEKVVVG 556

Query: 383  AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTH 440
                 G +V+   G+       H ++  +  P KKF+ G  +  RVL V+ ++  + +T 
Sbjct: 557  GQGVSGLVVKVAEGITGYVHETHFADVRLQHPEKKFREGMTVKARVLSVRPRKRQMRLTL 616

Query: 441  KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
            KKTLV S   I+ S+ E        G I+ I  HG  + FY GV+G+ P S++      +
Sbjct: 617  KKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSEAFIQD 676

Query: 501  PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVDVV 555
            P   + VGQVV   I+   P ++++ +S    P+    D    L     GS+VSG   V+
Sbjct: 677  PKEHFKVGQVVNVHILEVDPENQKLLVS-CKDPSAFGLDKQAALKALSVGSIVSG--KVI 733

Query: 556  TPNAVVVYVIAKGYS-KGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NESS 610
              +   V+V   G + K  +P   L D  + A   +S +K    G     LLVLD NE  
Sbjct: 734  QKSDDDVHVELDGSNLKAILPLGQLTD--KSANKSQSALKRIHMGQTLTDLLVLDKNERR 791

Query: 611  N-LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG--FAP 665
              + LS+K SL+ + +  +L    +     + V G++ +I      VRF G L G  F  
Sbjct: 792  RAITLSSKPSLVEAGKTGKLICTYADAKVGAEVPGFISSIRPGAVLVRFGGNLVGVMFKT 851

Query: 666  RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 725
            R    D ++          QS+   I  ++ E  R+ +    +   S +A   +     E
Sbjct: 852  RLPIEDQEKEAFG--LRKDQSITVRIRAIDLERTRLVVDPLTAELPSNEAKPKK-----E 904

Query: 726  EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL- 784
            ++ A  Q+          V+    G ++E K+   +D    ++ E    V G +   Q+ 
Sbjct: 905  KESARPQAHGP-------VQDITFGQIVEAKIVGIHD--TQLNVETADKVQGRVDISQIF 955

Query: 785  -----------------AGATVESGSVIQAAILDVAKAERLVDLSLKTV-FIDRFREANS 826
                              G T+     ++A  L  +K  R +  S ++   +  F    S
Sbjct: 956  DSWDNIKDPEEPLSQFKKGETIR----VRAIGLHDSKDHRFLAFSHRSYNSVLEFTAKAS 1011

Query: 827  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKF 885
            + +A   + K  + +DL V  T  A V     N L  ++ P     I    VSD +T K 
Sbjct: 1012 DIEAD--ELKPLSLEDLQVGSTHVAFVNNASRNGLWTNISPVVRGRINAMDVSD-DTSKM 1068

Query: 886  PQ--KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 943
                  F  G ++   V+A+     A R +L L A S++  + +  + K +    G +V+
Sbjct: 1069 NDVINNFPIGTALKVRVIAV----DAKRGVLDLSARSDSSAAVTWDSIKPNQVLAGCVVK 1124

Query: 944  AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA--KSN 1001
                 +   ++ +K G    G +H+ +++DD  +V  N    +  G  +   ++   KSN
Sbjct: 1125 -----VNERQIMVKLGSNVAGHVHLVDMSDDFGDV--NTL-KYDKGDAIQVSVVEVDKSN 1176

Query: 1002 KPDMKKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1059
            K          LS +PS +  + S I    +     V  G  + G+V  V ++   + + 
Sbjct: 1177 K-------RVRLSTRPSRVLNSSSPITDPEITSVKQVVSGSTIRGFVKHVADKGVFVLLG 1229

Query: 1060 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
             ++ A + I  S      L+E++  F + + V G VLS+++    + L L+         
Sbjct: 1230 GNVSALVKI--SNLSDRFLKEWKEHFQVDQLVKGRVLSVDEGAGQVELSLK-------SS 1280

Query: 1120 TVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP 1177
             VD +   ++T+  I    IV G+I K+      +VV    ++ G  H +E+ +  V   
Sbjct: 1281 VVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGSDNVSGLCHRSEMADSPVE-- 1338

Query: 1178 LSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
                     D    Y  G  VK KVL + R
Sbjct: 1339 ---------DARKLYKAGDVVKAKVLTLDR 1359



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 163/364 (44%), Gaps = 41/364 (11%)

Query: 98   KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSG-----IDVKP- 151
            K LSLE +Q G    A+V +   +G   +   P   G +   ++++++      I+  P 
Sbjct: 1019 KPLSLEDLQVGSTHVAFVNNASRNGLWTNIS-PVVRGRINAMDVSDDTSKMNDVINNFPI 1077

Query: 152  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 211
            G  L+  V ++D  R V+ LS+  D+ +         ++ D + P  +++  V  + E  
Sbjct: 1078 GTALKVRVIAVDAKRGVLDLSARSDSSA--------AVTWDSIKPNQVLAGCVVKVNERQ 1129

Query: 212  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 271
            +M+   +   G V +  + + F   N    Y++   +   ++ VD +++ V L+  P  +
Sbjct: 1130 IMVKLGSNVAGHVHLVDMSDDFGDVNTLK-YDKGDAIQVSVVEVDKSNKRVRLSTRPSRV 1188

Query: 272  HNRAPPSHVKVGDIYDQSKVVR-----------VDRGLGLLLDIPSTPVSTPAYVTISDV 320
             N + P  +   +I    +VV             D+G+ +LL       +  A V IS++
Sbjct: 1189 LNSSSP--ITDPEITSVKQVVSGSTIRGFVKHVADKGVFVLLG-----GNVSALVKISNL 1241

Query: 321  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVV 377
            ++  +++ ++ ++    V+ R+L      G     LK+S  +     + T+ D+KP  +V
Sbjct: 1242 SDRFLKEWKEHFQVDQLVKGRVLSVDEGAGQVELSLKSSVVDDNYKPLKTYKDIKPNQIV 1301

Query: 378  KGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 433
             GK+  V+ FGA +   G   V  LC    M++  +    K +K G  +  +VL +    
Sbjct: 1302 TGKIRKVEDFGAFIVVDGSDNVSGLCHRSEMADSPVEDARKLYKAGDVVKAKVLTLDRNK 1361

Query: 434  KRIT 437
            KRI+
Sbjct: 1362 KRIS 1365



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 6/170 (3%)

Query: 374  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
            G  ++G V  V   G  V   G V AL  + ++S+  + +  + F+V   +  RVL V  
Sbjct: 1209 GSTIRGFVKHVADKGVFVLLGGNVSALVKISNLSDRFLKEWKEHFQVDQLVKGRVLSVDE 1268

Query: 433  -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF--VRFYNGVQGFAP 489
             + ++ ++ K ++V      L +Y +     I  G I K+E  G F  V   + V G   
Sbjct: 1269 GAGQVELSLKSSVVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGSDNVSGLCH 1328

Query: 490  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
            RSE+   P  +   +Y  G VVK ++++     +RI  SF +KP    +D
Sbjct: 1329 RSEMADSPVEDARKLYKAGDVVKAKVLTLDRNKKRI--SFGLKPAYFDDD 1376



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 8/134 (5%)

Query: 1284 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSN 1340
            ++ +D  ++ PEK+F  G  V  RVLSV P  +++ +TLK    +T   S+   I +   
Sbjct: 578  THFADVRLQHPEKKFREGMTVKARVLSVRPRKRQMRLTLK----KTLVNSDTPIIKSFDE 633

Query: 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
            + VG   +G I  +  +G  I      + G   VS++SE  + + +  ++ G+ V V IL
Sbjct: 634  VEVGQQALGTISDISPHGARIEFYK-GVRGWLPVSQMSEAFIQDPKEHFKVGQVVNVHIL 692

Query: 1401 KVDKEKRRISLGMK 1414
            +VD E +++ +  K
Sbjct: 693  EVDPENQKLLVSCK 706



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 121/586 (20%), Positives = 244/586 (41%), Gaps = 96/586 (16%)

Query: 868  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
            Y H   +A V      + P+K+F  G +V A V+++       RL L    ++    S +
Sbjct: 574  YVHETHFADVR----LQHPEKKFREGMTVKARVLSVRPRKRQMRLTLKKTLVN----SDT 625

Query: 928  KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFK 987
               K     +VG      I++I P   R++F  G  G + ++++++     +++   +FK
Sbjct: 626  PIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSE---AFIQDPKEHFK 682

Query: 988  IGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQRVTGYV 1046
            +GQ V   I+    + D +   L      PS   + +  + K L      S+G  V+G V
Sbjct: 683  VGQVVNVHIL----EVDPENQKLLVSCKDPSAFGLDKQAALKAL------SVGSIVSGKV 732

Query: 1047 -YKVDNEWALLTISRHLKAQL---FILDSAYEPSELQEFQRRFHIGKAVTG-HVLSINKE 1101
              K D++  +     +LKA L    + D +   S  Q   +R H+G+ +T   VL  N+ 
Sbjct: 733  IQKSDDDVHVELDGSNLKAILPLGQLTDKSANKS--QSALKRIHMGQTLTDLLVLDKNER 790

Query: 1102 KKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV--GGLVVQIG 1157
            ++ + L  +P   + G + K +    D           VG  +   +S +  G ++V+ G
Sbjct: 791  RRAITLSSKPSLVEAGKTGKLICTYADAK---------VGAEVPGFISSIRPGAVLVRFG 841

Query: 1158 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1217
             +L G +  T L       P+   ++  F      D+   V+ + +++ RT         
Sbjct: 842  GNLVGVMFKTRL-------PIEDQEKEAFGLRK--DQSITVRIRAIDLERT--------- 883

Query: 1218 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEK--------IEDLSPNMIVQGYVKNVTSKGC 1269
              R  +D +    +++L ++   P K  E         ++D++   IV+  +  +     
Sbjct: 884  --RLVVDPL----TAELPSNEAKPKKEKESARPQAHGPVQDITFGQIVEAKIVGIHDTQL 937

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL-------------SK 1316
             +  + K+  +V +S + D +    + E P+ +   G  + V  +             S 
Sbjct: 938  NVETADKVQGRVDISQIFDSWDNIKDPEEPLSQFKKGETIRVRAIGLHDSKDHRFLAFSH 997

Query: 1317 R-----VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1371
            R     +E T K SD   A + +  +L +L VG   +  +      GL+  I    + G 
Sbjct: 998  RSYNSVLEFTAKASDIE-ADELKPLSLEDLQVGSTHVAFVNNASRNGLWTNISPV-VRGR 1055

Query: 1372 CHVSELSED--HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
             +  ++S+D   ++++   +  G  +KV+++ VD ++  + L  +S
Sbjct: 1056 INAMDVSDDTSKMNDVINNFPIGTALKVRVIAVDAKRGVLDLSARS 1101



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 136/290 (46%), Gaps = 37/290 (12%)

Query: 1132 IHEGDIVGGRISK---ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            +  G+IV   I K      GV GLVV++   + G VH T   ++ +  P     E +F  
Sbjct: 540  VPAGEIVSCMIEKVVVGGQGVSGLVVKVAEGITGYVHETHFADVRLQHP-----EKKF-- 592

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                 EG  VK +VL +    R    + L+L+ +L      NS       DTP   ++  
Sbjct: 593  ----REGMTVKARVLSVRPRKR---QMRLTLKKTL-----VNS-------DTP--IIKSF 631

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            +++       G + +++  G  I   + +   + +S +S+ +++ P++ F +G++V   +
Sbjct: 632  DEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSEAFIQDPKEHFKVGQVVNVHI 691

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
            L V+P ++++ V+ K  D       +   L  L VG IV G++ +     + + ++ +NL
Sbjct: 692  LEVDPENQKLLVSCK--DPSAFGLDKQAALKALSVGSIVSGKVIQKSDDDVHVELDGSNL 749

Query: 1369 VGLCHVSELSEDHVDNIETIYR---AGEKVKVKILKVDKEKRRISLGMKS 1415
              +  + +L++   +  ++  +    G+ +   +L +DK +RR ++ + S
Sbjct: 750  KAILPLGQLTDKSANKSQSALKRIHMGQTL-TDLLVLDKNERRRAITLSS 798


>gi|170085507|ref|XP_001873977.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651529|gb|EDR15769.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1468

 Score =  342 bits (876), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 339/1226 (27%), Positives = 568/1226 (46%), Gaps = 152/1226 (12%)

Query: 629  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 688
            S  + + P ++V   +  I  TG  ++ LG   G         G +A     Y VG+ VR
Sbjct: 338  SSVTSVLPGALVQSLITAIHPTGLNLQVLGFFEGTVDPVHLKKGGKA-----YQVGKKVR 392

Query: 689  SNIL-DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV-EG 746
            + IL + +S   R  L+L     + +               A    SK   +E K + E 
Sbjct: 393  ARILYEYSSSPPRFALALVDHLTNLS---------------APCIKSKELPAETKSIQEA 437

Query: 747  FIIGSVIEGK--VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES---------GSVI 795
            F +G++IE    +    + G++V  E    V GF+    L+   V S         G++ 
Sbjct: 438  FPLGTIIESAKVLRVETERGIIV--EVQPGVEGFVHISHLSEDHVPSLSSTGPWKPGTLH 495

Query: 796  QAAILDVAKAERLVDLSLKTVFID-RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 854
            +A +      + L+ LS K   I+ +F + +                D+ V + +   ++
Sbjct: 496  RARVTGYFSFDGLLQLSFKPSIIEQKFLQVS----------------DVEVGEVIKGTIK 539

Query: 855  IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLL 914
             + ++ L +SL      + + +     T K P+K+F  G  +   V+A+       R  +
Sbjct: 540  KLTDSGLFVSLSRSIDGVVWPNHYADITLKHPEKRFKPGAGIKCKVLAV----DVYRKRI 595

Query: 915  LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 974
             L A      S+     K      G +  A I ++    L ++F       +   E++D 
Sbjct: 596  SLTAKKTLLDSNLPILSKIDDAKPGFVTHAVIFKVYGNHLLVEFYNNLKAIVPAKEISDI 655

Query: 975  KSNVVENLFSNFKIGQTVTARIIA-KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1033
              N    L  +F IG+ V  RII+  + +  +  S    L  K     VS+I +      
Sbjct: 656  PIN---KLSDSFPIGRVVRTRIISVDTEQGRIVASIRQALGNKDP---VSDISA------ 703

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTIS-RHLKAQLFILDSA-YEPSELQEFQRRFHIGKAV 1091
              V IG  V G + ++  + AL+ +    ++A L + + A +    L E   +  +G  +
Sbjct: 704  --VEIGNIVKGSISEIHKDNALIILQPTQIRALLSLKNLANFRQISLGELLVKLKVGDEL 761

Query: 1092 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1151
               V+      K + +V    +     K   +S D+++     G IVGGR+++       
Sbjct: 762  DELVVVTRNPDKGVVIVANTPKKVPLLKGSSVSIDSLKV----GQIVGGRVTRHTRHSA- 816

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
             ++++ P + G +H T++ +         YD G   P         ++  ++EI R+   
Sbjct: 817  -LIKVTPQIGGTLHPTDISD--------DYDMGLVLP----PVDSILRAAIIEIDRSKN- 862

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
               + LS R S     ST        VD    H   I D+     V+G +K+V   G F+
Sbjct: 863  --QLRLSTRHSKMYPESTKKI-----VDQEIIH---IFDIHVGDTVRGSIKSVADHGLFV 912

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
             + R +DA+V +  L D +VE  +  F   ++V G +LSV+  +++VE+TLK+ D  T +
Sbjct: 913  TIGRDIDARVQIRELFDDFVEDWKARFQEKQIVKGLILSVDLQTRKVEMTLKSGDLSTRN 972

Query: 1332 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE---TI 1388
             S +  L++L VG  V G +KR+E YGLFI I+ + L GLCH S+LS+     +      
Sbjct: 973  GSSVG-LADLKVGQKVDGLVKRIEDYGLFINIDRSKLNGLCHKSQLSDSQGAGVSFALNS 1031

Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSS- 1447
            +  G++VK  I+ +DK   RISL +K S F N+ D        +++E I E     ++  
Sbjct: 1032 FHEGDRVKAVIIGIDKA--RISLSLKPSLF-NEED---FQEGADTNEPIPEPSGVIKNDN 1085

Query: 1448 ---------------LLENSSVAVQDMDMESEDGGSLVLA----QIESRASVPPLEVNLD 1488
                             E     V D+D++     S  ++    ++ S A +P L     
Sbjct: 1086 VETSDDDEDEEVDISDSEGEGDDVMDVDIDQPLAHSRPVSAQKPRVVSTAPIPSLA---- 1141

Query: 1489 DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD------ 1542
                 +  G   + G        D ++       E +E  +       + +E D      
Sbjct: 1142 -----LSGGFQWSFGEQQLGDDYDAESPSSESDLEGDEYGKRKTKRRRKAIEHDLTAEMH 1196

Query: 1543 --APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1600
              +P +  +FERL+  SPNSS++WI+YM+F L +++VEK+R I  RA++TIN REE EKL
Sbjct: 1197 TKSPESNADFERLLLGSPNSSYLWIQYMSFQLQLSEVEKSREIGRRAIETINFREEQEKL 1256

Query: 1601 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1660
            N+W+A  NLEN YG    E++   F++A +  D K VHL L  +++++++ + A+E   +
Sbjct: 1257 NVWIALLNLENVYGT--LESLETTFKQAARANDSKTVHLRLASIFDQSDKLEKAEEQFNR 1314

Query: 1661 MIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1719
              KKF  S KVW    +  LK+   E  + ++ R+LLSL + KH+K IS+ A LE+K G 
Sbjct: 1315 TCKKFGQSSKVWTLFSEYYLKRGNMEESRKLLPRSLLSLDKRKHLKTISRFAQLEYKYGD 1374

Query: 1720 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1779
             +RGR++FEGI+  +PKR DLWSIY+D E    ++  +R LFER ++L +   K K  FK
Sbjct: 1375 PERGRTLFEGIVDSHPKRWDLWSIYMDMEGVQKNIQGLRNLFERVLTLHMTSHKAKSFFK 1434

Query: 1780 KYLEYEKSVGEEERIEYVKQKAMEYV 1805
            K+LE EK +G+EE +  VK KA+E+ 
Sbjct: 1435 KWLELEKRIGDEEGVSDVKTKAVEWT 1460



 Score =  180 bits (456), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 155/543 (28%), Positives = 251/543 (46%), Gaps = 49/543 (9%)

Query: 58  LPTIFHVGQLVSCIV-------------LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 104
           L  IF VGQ V  +V             L    D+     R++ LSL    +  G+    
Sbjct: 194 LSDIFRVGQYVRAVVSAIHAPGSSEASSLGKSRDETSKASRRVELSLVPERVNAGVQKAD 253

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNN--LAENSGIDVKPGLLLQGVVRSI 162
           ++ G  +TA VKS+EDHGYIL  G+    GFL   +  +  +  I +  G LL   V  +
Sbjct: 254 LKNGFTMTAAVKSVEDHGYILDLGISGVEGFLAFKDTKMRPSGSIALDVGRLLDVSVTKL 313

Query: 163 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 222
               +   +++D    S     ++   S+  ++PG +V + + +I   G+ L  L +F G
Sbjct: 314 SANGRTCNVTTDQALFSSSYVTEMS--SVTSVLPGALVQSLITAIHPTGLNLQVLGFFEG 371

Query: 223 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA-VGLTLNPYLLHNRAP----- 276
           TVD  HL+           Y   KKV ARIL+   +S     L L  +L +  AP     
Sbjct: 372 TVDPVHLKKG------GKAYQVGKKVRARILYEYSSSPPRFALALVDHLTNLSAPCIKSK 425

Query: 277 --PSHVK-------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
             P+  K       +G I + +KV+RV+   G+++++         +V IS ++E+ V  
Sbjct: 426 ELPAETKSIQEAFPLGTIIESAKVLRVETERGIIVEVQP---GVEGFVHISHLSEDHVPS 482

Query: 328 LEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 385
           L     +K G+  R R+ G+   +GL     K S  E      SDV+ G V+KG +  + 
Sbjct: 483 LSSTGPWKPGTLHRARVTGYFSFDGLLQLSFKPSIIEQKFLQVSDVEVGEVIKGTIKKLT 542

Query: 386 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKT 443
             G  V     +  +    H ++  +  P K+FK GA +  +VL V    KRI++T KKT
Sbjct: 543 DSGLFVSLSRSIDGVVWPNHYADITLKHPEKRFKPGAGIKCKVLAVDVYRKRISLTAKKT 602

Query: 444 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 503
           L+ S L ILS   +A    +TH  I K+  +   V FYN ++   P  E+   P  + S 
Sbjct: 603 LLDSNLPILSKIDDAKPGFVTHAVIFKVYGNHLLVEFYNNLKAIVPAKEISDIPINKLSD 662

Query: 504 MYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSG-VVDVVTPNA 559
            + +G+VV+ RI+S      RI  S    +     VS+   V++G++V G + ++   NA
Sbjct: 663 SFPIGRVVRTRIISVDTEQGRIVASIRQALGNKDPVSDISAVEIGNIVKGSISEIHKDNA 722

Query: 560 VVV 562
           +++
Sbjct: 723 LII 725


>gi|452821025|gb|EME28060.1| rRNA biogenesis protein rrp5 [Galdieria sulphuraria]
          Length = 1832

 Score =  341 bits (874), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 282/998 (28%), Positives = 512/998 (51%), Gaps = 135/998 (13%)

Query: 849  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS- 907
            +  IV ++KE YL++ +P+ N+ + Y +  D   +           SVI +V ++   + 
Sbjct: 933  LRGIVLLIKEEYLIMRIPQLNNCLVYLTSWDPRVRA--------NLSVIYSVDSVIEGTV 984

Query: 908  --TAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL---KFGIGF 962
               + RL +L+   +  E     + +   +  VG  V   I  I  + L L   ++ +  
Sbjct: 985  YYCSERLTMLVAMDANDE-----KKRMIENVQVGDHVIGRIVRISTVHLHLFIPRYSV-- 1037

Query: 963  HGRIHITEVNDD--KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1020
            +GRIH +++  +  K  ++  L  +F+IGQ V A+IIAK +    KK  + +L++  + +
Sbjct: 1038 YGRIHCSQIMSEPGKDTLISPL-EHFEIGQQVEAKIIAKDHS---KKYQILDLTLNKNDV 1093

Query: 1021 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPS 1076
               E   K L +  ++S  Q +TG+V+K+  +  L++ S      +K   F  +     S
Sbjct: 1094 VTME---KNLVDWSNLSCRQCLTGFVHKIMTDKVLISFSSKVIGVMKRWGFTQNEQLLSS 1150

Query: 1077 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1136
              ++       G+ +   ++ +N+ +KLL + L                  +   +H GD
Sbjct: 1151 --KQIFSSLRTGQPLHCTIIRLNQSRKLLEVAL----------------SELVKPVHVGD 1192

Query: 1137 IVGGRISKILSG------VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
             V   + ++L G      +   V        G + FT++ +         +D      +S
Sbjct: 1193 SVVAHVGQVLYGAEFCLELPKWVEWSLSTCRGVLSFTDIDD--------NFDRAT-AKIS 1243

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK-HLEKIE 1249
                 +++K  ++E S           S++     + S  +SD      TP     + + 
Sbjct: 1244 HIKSRKWIKGIIIECS-----------SVKEKPIAIVSLRNSDAHPTQSTPKDIRWKNLM 1292

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            DL    +V+G++++ + KGCF+ LS  +  +V+L NLSDG+V++ E+ FP+G+LV  +V+
Sbjct: 1293 DLKAGQLVRGFIRHHSLKGCFVQLSSSIIGRVMLRNLSDGFVQNVEETFPLGQLVTAKVI 1352

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
             ++  + +VE++L+ SD   + +  I   S L  G  + G +K ++ +G+F+++    + 
Sbjct: 1353 DIQ--NGQVELSLRESD--LSDRQTI--YSVLQKGLRLQGTVKNIQPFGIFVSL-GLGVT 1405

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1429
            GLCH+S L +      ++ YR GE + V++  VD+EK RI+L        +  D ++ + 
Sbjct: 1406 GLCHLSTLEK------QSQYRIGEVIWVQVDNVDREKGRINL--------HPLDPIKENG 1451

Query: 1430 EEESDEAIEEVGSYNRSSLLENSSVAVQDMDM---------ESEDGGS--LVLAQIESRA 1478
               +   +  + S +++S L++S +    +D          ESE  GS   VL   ES  
Sbjct: 1452 RIGTLRQLVGIDSTSQNSSLQHSYIDSVSVDANRDVVESSDESEGNGSDCEVLQVSES-- 1509

Query: 1479 SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERL 1538
                    L DE   ++N  SQN+ + +    +  ++    +  E+ ER  +     ER 
Sbjct: 1510 ------FQLQDEIL-LENDDSQNRANKNNVAKMVVESTEQQQDDERLERYSDEEIELERS 1562

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L++  P+  ++FER V +SP+ S +WI+YMA+ +SM  ++KA+  A RAL+ I++R ++E
Sbjct: 1563 LKE--PQNEEDFERHVLASPDDSSIWIRYMAYFISMGQIQKAKETARRALEKISVRNQDE 1620

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLNIW+AY NLE +YG+  E  +  + + A    + +K+ L      ++T + K ++E+ 
Sbjct: 1621 KLNIWIAYLNLEAQYGD--ESHLASILEEACSRTNAEKLLLNFAKSMQKTRKEK-SEEIY 1677

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQQEGV---QAVVQRALLSLPRHKHIKFISQTAILEF 1715
             +  ++FKHS +VW+ +V     ++++ +   + +++RALLSLP+  HI+ I++  +LE+
Sbjct: 1678 LRACRQFKHSPEVWM-QVGTFYYEKKKNISEGRKILERALLSLPKQDHIQVITKFTVLEY 1736

Query: 1716 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV----DLIRGLFERAISLSLPP 1771
            K G  +R R++FE ++S +PKR D+W++YLD E +  D     + +R LFERA SLSL  
Sbjct: 1737 KFGSIERARTIFENMISSFPKRLDIWNVYLDMEWKQVDTEEDKERLRLLFERACSLSLSS 1796

Query: 1772 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
            KKMKFLFKKYLE+EK++G     E VK  A EYVE  L
Sbjct: 1797 KKMKFLFKKYLEFEKTIGGNP--ERVKTLAREYVEKQL 1832



 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 146/581 (25%), Positives = 250/581 (43%), Gaps = 91/581 (15%)

Query: 107 EGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 164
           +G ++   +   E++GY + FGL S  + GFLP   L E     +K G L+  +V     
Sbjct: 201 KGCLVYGMIYEREEYGYRVTFGLESIQYDGFLP---LEETESQILKSGSLIXQLVCD--- 254

Query: 165 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 224
             K+ Y S  P     CV   L+       + G ++  + +    +  + S +T F  ++
Sbjct: 255 -SKISYQSKWP---FGCVFPGLR-------MEGQVLQKKWKGSWTHIKLASNMTGFVYSM 303

Query: 225 DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP---PSHVK 281
           +   ++ +F              ++ R++FVD   R + L+    L+    P   P+  K
Sbjct: 304 ET--IRESF--------------LDLRVIFVDVGKRVIYLSSVESLVGFLEPAKLPNAWK 347

Query: 282 VGDIYDQSKVVRVDRGL----GLLL------DIPSTPVSTPAYVTIS-DVAEEEVRKLEK 330
           +G+I    K V V+  L    G+LL       I   P S  A   IS D A   +  L+ 
Sbjct: 348 LGNIL---KNVIVEGHLSSPKGILLRHSESNTILFAPNSQLADSDISADAALSSLPSLQ- 403

Query: 331 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 390
                S V  RI+ F  L+G     +K S     + +  ++ PGM V+ K+ +V   G +
Sbjct: 404 -----SIVCCRIVAFSPLDGTIIVSMKPSILSKTIVSFDELHPGMPVQCKIESVRENGCL 458

Query: 391 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 448
                 ++A  P  H  +    +   KF  G ++   VL +   S R T+T KK  + ++
Sbjct: 459 CIVEDKIRAWIPQMHFGDTVGARLKNKFVAGKKVKGCVLSIFQDSHRCTITTKKKFIDNQ 518

Query: 449 LAILSSYAEATDRLITHGWITKIE---KHGCFVRFYNGVQGFAPRSELGLD--PGCEP-S 502
             +++S  +A   + +  +    +     G  V F+ GV+GF P S +GL+  P  E  S
Sbjct: 519 YPVIASIQDAKSNIGSAAYCCVYQVSSSRGLQVEFFQGVKGFLPVSYMGLEKLPSLEWLS 578

Query: 503 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD---LVKLGSLVSGVVDVVTPNA 559
             Y VG+ +K  I+S    S RI +S  +    +  DD   +V  G+    +V +   N 
Sbjct: 579 ENYPVGKTLKVWILSVHEESHRIIVS--LSRDVIMNDDSSAIVTYGA----IVGIEYGNL 632

Query: 560 VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-------FDQLLVLDNE-SSN 611
           +V   +     +  +P EHL+D    +  + S++   +E        +Q+++L +  SSN
Sbjct: 633 IVEVCLLDSRKRALLPKEHLSDFAYLSERIYSLLVSYFESNSSSLPLEQVVILRSRISSN 692

Query: 612 ---LLLSAKYSLINSAQQLPS-----DASHIHPNSVVHGYV 644
               L+S K SLI  A   PS       S    N ++ G+V
Sbjct: 693 DCRALVSLKRSLIQFALTYPSLSSDRICSEWKANQMLPGFV 733



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 155/363 (42%), Gaps = 36/363 (9%)

Query: 390  IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL 449
            I+  PG    + PL H   FEI +     +V A+++ +    K + + +T  K  V +  
Sbjct: 1046 IMSEPGKDTLISPLEH---FEIGQ-----QVEAKIIAKDHSKKYQILDLTLNKNDVVTME 1097

Query: 450  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS----SMY 505
              L  ++  + R    G++ KI      + F + V G   R     +     S    S  
Sbjct: 1098 KNLVDWSNLSCRQCLTGFVHKIMTDKVLISFSSKVIGVMKRWGFTQNEQLLSSKQIFSSL 1157

Query: 506  HVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 562
              GQ + C I+  +  SR+   + LS ++KP  V +  +  +G ++ G    +     V 
Sbjct: 1158 RTGQPLHCTIIR-LNQSRKLLEVALSELVKPVHVGDSVVAHVGQVLYGAEFCLELPKWVE 1216

Query: 563  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL------LLSA 616
            + ++    +G +    + D+ + AT   S IK       +++   E S++      ++S 
Sbjct: 1217 WSLST--CRGVLSFTDIDDNFDRATAKISHIKSRKWIKGIII---ECSSVKEKPIAIVSL 1271

Query: 617  KYSLINSAQQLPSDASH-----IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
            + S  +  Q  P D        +    +V G++ +    GCFV+    + G        D
Sbjct: 1272 RNSDAHPTQSTPKDIRWKNLMDLKAGQLVRGFIRHHSLKGCFVQLSSSIIGRVMLRNLSD 1331

Query: 672  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--STDASFMQEHFLLEEKIA 729
            G   ++ +T+ +GQ V + ++D+  + G++ LSL++S  S   T  S +Q+   L+  + 
Sbjct: 1332 GFVQNVEETFPLGQLVTAKVIDI--QNGQVELSLRESDLSDRQTIYSVLQKGLRLQGTVK 1389

Query: 730  MLQ 732
             +Q
Sbjct: 1390 NIQ 1392



 Score = 45.1 bits (105), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 16/254 (6%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K +   ++L P M VQ  +++V   GC  ++  K+ A +   +  D      + +F  GK
Sbjct: 431  KTIVSFDELHPGMPVQCKIESVRENGCLCIVEDKIRAWIPQMHFGDTVGARLKNKFVAGK 490

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRV-ESYGL 1359
             V G VLS+   S R  +T K    D++    + I +  + ++G      + +V  S GL
Sbjct: 491  KVKGCVLSIFQDSHRCTITTKKKFIDNQYPVIASIQDAKS-NIGSAAYCCVYQVSSSRGL 549

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             +      + G   VS +  + + ++E +   Y  G+ +KV IL V +E  RI + +   
Sbjct: 550  QVEFFQ-GVKGFLPVSYMGLEKLPSLEWLSENYPVGKTLKVWILSVHEESHRIIVSLSRD 608

Query: 1417 YFKNDADNLQMSSEE----ESDEAIEEVGSYN--RSSLLENSSVAVQDMDMESEDGGSLV 1470
               ND  +  ++       E    I EV   +  + +LL    ++  D    SE   SL+
Sbjct: 609  VIMNDDSSAIVTYGAIVGIEYGNLIVEVCLLDSRKRALLPKEHLS--DFAYLSERIYSLL 666

Query: 1471 LAQIESRASVPPLE 1484
            ++  ES +S  PLE
Sbjct: 667  VSYFESNSSSLPLE 680



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 20/244 (8%)

Query: 487 FAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---- 539
           FAP S+L    +      SS+  +  +V CRI++  P    I +S  MKP+ +S+     
Sbjct: 379 FAPNSQLADSDISADAALSSLPSLQSIVCCRIVAFSPLDGTIIVS--MKPSILSKTIVSF 436

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 599
           D +  G  V   ++ V  N  +  V  K   +  IP  H  D +     +K+    G + 
Sbjct: 437 DELHPGMPVQCKIESVRENGCLCIVEDK--IRAWIPQMHFGDTV--GARLKNKFVAGKKV 492

Query: 600 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI---IETGCFVR 655
              +L +  +S    ++ K   I++   + +       N     Y C        G  V 
Sbjct: 493 KGCVLSIFQDSHRCTITTKKKFIDNQYPVIASIQDAKSNIGSAAYCCVYQVSSSRGLQVE 552

Query: 656 FLGRLTGFAPRSKAVDGQRADL---SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           F   + GF P S     +   L   S+ Y VG++++  IL V+ E+ RI +SL +    +
Sbjct: 553 FFQGVKGFLPVSYMGLEKLPSLEWLSENYPVGKTLKVWILSVHEESHRIIVSLSRDVIMN 612

Query: 713 TDAS 716
            D+S
Sbjct: 613 DDSS 616



 Score = 40.8 bits (94), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 140/365 (38%), Gaps = 64/365 (17%)

Query: 81  EIGKRKIWLSLRLSL--------LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 132
           ++GKR I+LS   SL        L     L  + + +++  ++ S    G +L     + 
Sbjct: 319 DVGKRVIYLSSVESLVGFLEPAKLPNAWKLGNILKNVIVEGHLSS--PKGILLRHSESNT 376

Query: 133 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVY--------LSSDPDTVSKCVTK 184
             F P + LA+ S I     L     ++SI   R V +        +S  P  +SK +  
Sbjct: 377 ILFAPNSQLAD-SDISADAALSSLPSLQSIVCCRIVAFSPLDGTIIVSMKPSILSKTI-- 433

Query: 185 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 244
               +S D L PGM V  +++S+ ENG +          +   H  +T      KN +  
Sbjct: 434 ----VSFDELHPGMPVQCKIESVRENGCLCIVEDKIRAWIPQMHFGDTV-GARLKNKFVA 488

Query: 245 HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSK---------VVRVD 295
            KKV   +L +   S    +T     + N+ P     +  I D            V +V 
Sbjct: 489 GKKVKGCVLSIFQDSHRCTITTKKKFIDNQYPV----IASIQDAKSNIGSAAYCCVYQVS 544

Query: 296 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE---KKYKEGSCVRVRILGF-----RH 347
              GL ++          ++ +S +  E++  LE   + Y  G  ++V IL       R 
Sbjct: 545 SSRGLQVEFFQ---GVKGFLPVSYMGLEKLPSLEWLSENYPVGKTLKVWILSVHEESHRI 601

Query: 348 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ---FPGGVKALCPLP 404
           +  L+  ++            +D    +V  G ++ ++    IV+        +AL P  
Sbjct: 602 IVSLSRDVI-----------MNDDSSAIVTYGAIVGIEYGNLIVEVCLLDSRKRALLPKE 650

Query: 405 HMSEF 409
           H+S+F
Sbjct: 651 HLSDF 655


>gi|393244266|gb|EJD51778.1| nucleic acid-binding protein [Auricularia delicata TFB-10046 SS5]
          Length = 1472

 Score =  339 bits (869), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 225/686 (32%), Positives = 371/686 (54%), Gaps = 57/686 (8%)

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            G  G VV+I   + G VH      + V+D L    + Q  P+     G   +  VL + +
Sbjct: 818  GRKGAVVRISSKISGSVH-----ALDVADELP--PKAQLPPV-----GTMTQFAVLAVDK 865

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
              +     +L+L S    +S  ++ ++        + +  + DL     ++G++K+V   
Sbjct: 866  DRK-----QLTLSSRPSNVSPESAGEVKD------REINSLGDLKVGQRLRGFIKSVADH 914

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ + R LDA+V +  L D +V+  + +F +   V G+++SV+    +VE++L++ D 
Sbjct: 915  GLFVNIGRNLDARVQIKELFDDFVKDWKSKFNVDDRVHGQIISVDVEKNQVEMSLRSGD- 973

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
            R  +Q E   L++   G  V   +KR E+YG+F+ IE T + GLCH S +S+    ++E 
Sbjct: 974  RKVAQVETKGLADFAKGQKVDAIVKRTETYGIFLQIEGTKISGLCHKSNISDTKDADVER 1033

Query: 1388 I---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ--------------MSSE 1430
                ++ G++VK  IL +D EKRRI  G+K S+F  DA++                +S  
Sbjct: 1034 AIKNFKEGDRVKAMILSIDLEKRRIDFGLKPSFF--DAEDFAPPASDDEDEDEDEAVSEA 1091

Query: 1431 EESDEAI-----EEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV 1485
             + DEA      +E  + N +S  E+    V  MD E         A I S +++     
Sbjct: 1092 GDQDEAATGSEADEAAAVNGASGSEDDDDEVVRMDGEDVVMEDTPAAPIASTSALQLGGF 1151

Query: 1486 NLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPR 1545
            N      D  +G +     +DE    D  + +  KKK K E E + R AE   + K AP 
Sbjct: 1152 NWTGRTADFADG-ADAPSSSDEGSDAD-PDFKRKKKKRKHEIEYD-RTAE---MHKRAPE 1205

Query: 1546 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1605
            +  +FERL+ SSPNSS++W++YM+F L +++ EKAR +  RAL+ IN REE EKLN+W+A
Sbjct: 1206 STADFERLLLSSPNSSYLWVQYMSFQLQLSETEKAREVGRRALKVINFREEQEKLNVWIA 1265

Query: 1606 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1665
              NLEN +G P  E++  +F+ A ++ D K +HL +  ++++T + + A+E   K  KKF
Sbjct: 1266 LLNLENLHGTP--ESLAGLFKDAARHNDSKTIHLRMAAIFDQTGKLEQAEEQFQKTCKKF 1323

Query: 1666 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1724
              S KVW    +  L+  + E  + ++ R + SL + KH+K IS+ A LE+K G  +RGR
Sbjct: 1324 GKSSKVWTEFGEFYLRHGKPEDARKLLSRCIQSLEKRKHLKTISKFAQLEYKLGDPERGR 1383

Query: 1725 SMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1784
            ++FEGI++ +PKR DLW +YLD E    ++  +R LF+R +S+ +   K K  FKK+L+ 
Sbjct: 1384 TIFEGIVNSHPKRFDLWFVYLDMEAGQKNIGALRNLFDRVLSMKMSNHKAKAFFKKWLDL 1443

Query: 1785 EKSVGEEERIEYVKQKAMEYVESTLA 1810
            EK +G+E+    VK+KA+++ +   A
Sbjct: 1444 EKRIGDEQGQNAVKEKAIQWTQKATA 1469



 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 188/702 (26%), Positives = 317/702 (45%), Gaps = 61/702 (8%)

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEI-----------GKRKIWLSLRLSLLYKGLSLETVQ 106
           LP IF VGQ V+ +V  +      +              ++ LSL    + +G+S   + 
Sbjct: 200 LPDIFRVGQYVTAVVSTVHAAGTSVDPMLKRPDVDRSSHRVELSLVPEEVNEGVSKRDLG 259

Query: 107 EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS--GIDVKP---GLLLQGVVRS 161
            G +L + +KS+EDHGY+L+FG+P  TGFL   + A+N   G++ K    G+ LQ  +  
Sbjct: 260 PGFILASTIKSVEDHGYVLNFGIPEATGFLSFKD-AKNGQHGLNAKKLPIGMALQVCITK 318

Query: 162 IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
                ++  +S +P TVS  +  ++   S+  ++PG +V   + ++L  G+ L  + +F 
Sbjct: 319 KSDNGRIYTVSIEPATVSAGLLSEVS--SVSSVLPGTLVDALITAVLPTGLNLQLMGFFE 376

Query: 222 GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYL--LHNRAPP 277
           GT+D +HL       +    +    K+ AR+++     + +   L+  P++  LH     
Sbjct: 377 GTIDQYHLG----LGDVVGRFKLGDKIKARVIYEVTHSSPKRFALSALPHVVSLHGATAG 432

Query: 278 SHV-----KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 331
           S        +G + D  KVVRV+   GLL  I        A+V IS V++E V  L    
Sbjct: 433 SSALYDAFPMGTVLDAIKVVRVEPERGLLCQIQD---GIAAFVHISQVSDEHVNTLSATA 489

Query: 332 --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 389
             +K G+  R R+ GF  L+GL    L+ S  +      SDV  G  +KG V  +     
Sbjct: 490 GTWKVGTVHRARVTGFFGLDGLVQVSLRQSILDQKFMHVSDVTVGERMKGTVKRLADNAL 549

Query: 390 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS 447
            V   G V A+    H ++  +  P K+FK G  +  RVL V  +  R+ +T KKTLV+S
Sbjct: 550 FVSVSGSVDAVVWPNHYADITLRHPEKRFKAGGTVKGRVLVVDPERNRLCLTLKKTLVES 609

Query: 448 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 507
            L I+S   EAT   ITH  + K    G  V F+N ++ F P+ E+  D   + +  + +
Sbjct: 610 DLPIVSKIEEATPGTITHAVVFKNLDKGLLVEFFNNLRAFVPQREMN-DSAVQSADDFPI 668

Query: 508 GQVVKCRIM------SSIPAS-RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV 560
           G+VV+ +I+      S I AS R+  L+F         DD    G++V G V  +     
Sbjct: 669 GKVVRVKILDVNAETSKIVASIRQGALNFQSAIDISGVDD----GAVVHGTVAALHKEHA 724

Query: 561 VVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYEFDQLLVLDNESSNLLLSAKYS 619
           ++ ++     +  +   +LA H        K+ +K G    +L V+   +    +   Y 
Sbjct: 725 MLSLVPSKV-RALLSFANLAKHRNLPLAQAKAALKVGEGLKELTVVGRNAEKGFVLVGYK 783

Query: 620 LINSAQQLPSDAS------HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 673
               A++L   A+       +    V+ G V +    G  VR   +++G        D +
Sbjct: 784 DEKRARRLSLSANSGLAIDKVTVGQVMPGLVVSHGRKGAVVRISSKISGSVHALDVAD-E 842

Query: 674 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               ++   VG   +  +L V+ +  ++TLS + S  S   A
Sbjct: 843 LPPKAQLPPVGTMTQFAVLAVDKDRKQLTLSSRPSNVSPESA 884



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 22/267 (8%)

Query: 92   RLSL-LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGID 148
            RLSL    GL+++ V  G V+   V S    G ++       +G +   ++A+       
Sbjct: 790  RLSLSANSGLAIDKVTVGQVMPGLVVSHGRKGAVVRIS-SKISGSVHALDVADELPPKAQ 848

Query: 149  VKP-GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI----DLLVPGMMVSTR 203
            + P G + Q  V ++D+ RK + LSS P  VS     ++K   I    DL V G  +   
Sbjct: 849  LPPVGTMTQFAVLAVDKDRKQLTLSSRPSNVSPESAGEVKDREINSLGDLKV-GQRLRGF 907

Query: 204  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 263
            ++S+ ++G+ ++        V I  L + F   +WK+ +N   +V+ +I+ VD     V 
Sbjct: 908  IKSVADHGLFVNIGRNLDARVQIKELFDDF-VKDWKSKFNVDDRVHGQIISVDVEKNQVE 966

Query: 264  LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD------RGLGLLLDIPSTPVSTPAYVT- 316
            ++L           + V+   + D +K  +VD         G+ L I  T +S   + + 
Sbjct: 967  MSLR----SGDRKVAQVETKGLADFAKGQKVDAIVKRTETYGIFLQIEGTKISGLCHKSN 1022

Query: 317  ISDVAEEEVRKLEKKYKEGSCVRVRIL 343
            ISD  + +V +  K +KEG  V+  IL
Sbjct: 1023 ISDTKDADVERAIKNFKEGDRVKAMIL 1049



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 85/178 (47%), Gaps = 15/178 (8%)

Query: 935  SYDVGSLVQA-EITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 992
            ++ +G+++ A ++  ++P   L  +   G    +HI++V+D+  N +      +K+G   
Sbjct: 439  AFPMGTVLDAIKVVRVEPERGLLCQIQDGIAAFVHISQVSDEHVNTLSATAGTWKVGTVH 498

Query: 993  TARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1052
             AR+             L ++S++ S+L       +      DV++G+R+ G V ++ + 
Sbjct: 499  RARVTGF-----FGLDGLVQVSLRQSIL------DQKFMHVSDVTVGERMKGTVKRLADN 547

Query: 1053 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1110
               +++S  + A   +  + Y    L+  ++RF  G  V G VL ++ E+  L L L+
Sbjct: 548  ALFVSVSGSVDA--VVWPNHYADITLRHPEKRFKAGGTVKGRVLVVDPERNRLCLTLK 603



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 116/553 (20%), Positives = 214/553 (38%), Gaps = 83/553 (15%)

Query: 310  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVF 366
            S  A V  +  A+  +R  EK++K G  V+ R+L            LK +  E    +V 
Sbjct: 556  SVDAVVWPNHYADITLRHPEKRFKAGGTVKGRVLVVDPERNRLCLTLKKTLVESDLPIVS 615

Query: 367  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
               +  PG +    V      G +V+F   ++A  P   M++   V+    F +G  +  
Sbjct: 616  KIEEATPGTITHAVVFKNLDKGLLVEFFNNLRAFVPQREMND-SAVQSADDFPIGKVVRV 674

Query: 427  RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY--- 481
            ++L V ++  +I  + ++  +  + AI  S  +  D  + HG +  + K    +      
Sbjct: 675  KILDVNAETSKIVASIRQGALNFQSAIDISGVD--DGAVVHGTVAALHKEHAMLSLVPSK 732

Query: 482  -NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA--------------SRRIN 526
               +  FA  ++    P  +  +   VG+ +K   +    A              +RR++
Sbjct: 733  VRALLSFANLAKHRNLPLAQAKAALKVGEGLKELTVVGRNAEKGFVLVGYKDEKRARRLS 792

Query: 527  LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 586
            LS           D V +G ++ G+V        VV + +K    G++    +AD L   
Sbjct: 793  LS----ANSGLAIDKVTVGQVMPGLVVSHGRKGAVVRISSK--ISGSVHALDVADELPP- 845

Query: 587  TVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV----- 639
               K+ + P     Q  VL  D +   L LS++ S ++     P  A  +    +     
Sbjct: 846  ---KAQLPPVGTMTQFAVLAVDKDRKQLTLSSRPSNVS-----PESAGEVKDREINSLGD 897

Query: 640  ------VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
                  + G++ ++ + G FV     L       +  D    D    + V   V   I+ 
Sbjct: 898  LKVGQRLRGFIKSVADHGLFVNIGRNLDARVQIKELFDDFVKDWKSKFNVDDRVHGQIIS 957

Query: 694  VNSETGRITLSLKQSCCSSTDASFMQ------EHFLLEEKI-AMLQSSKHNGSELKWVEG 746
            V+ E  ++ +SL+     S D    Q        F   +K+ A+++ ++  G  L+    
Sbjct: 958  VDVEKNQVEMSLR-----SGDRKVAQVETKGLADFAKGQKVDAIVKRTETYGIFLQ---- 1008

Query: 747  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 806
             I G+ I G  H+SN     +S  + +DV   I + +        G  ++A IL +   +
Sbjct: 1009 -IEGTKISGLCHKSN-----ISDTKDADVERAIKNFK-------EGDRVKAMILSIDLEK 1055

Query: 807  RLVDLSLKTVFID 819
            R +D  LK  F D
Sbjct: 1056 RRIDFGLKPSFFD 1068


>gi|336389636|gb|EGO30779.1| hypothetical protein SERLADRAFT_444441 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1430

 Score =  339 bits (869), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 275/915 (30%), Positives = 452/915 (49%), Gaps = 112/915 (12%)

Query: 934  SSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 990
            SSYD   +G +  A +++I    ++++F       I + EV      V   L   F +G+
Sbjct: 579  SSYDDDNIGLVTDAAVSKILDKAIQVEFYNNVKAIIPLQEVG----QVTGKLADEFSVGK 634

Query: 991  TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1050
             V  RII+   K     +     SI+   L V  + + +      V IG  V G V ++ 
Sbjct: 635  VVKVRIISIDAKNQRMVA-----SIRQVTLNVQSVAATI----TGVEIGSTVEGIVTEIH 685

Query: 1051 NEWALLTISRHLKAQLFILD--SAYEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRL 1107
                 L++       L  L   + +  +   + +    +G  V   V+ S N EK  + L
Sbjct: 686  TRNIALSLQPTQAPALISLRNLANHYGTTSAKLEMSLKVGDRVDRLVVVSRNLEKDFV-L 744

Query: 1108 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1167
            V+   +     K   +S D ++     G +VGGR+++      G  V+I   + G +H T
Sbjct: 745  VVGNLRGRAVIKKGAVSMDTIEI----GQVVGGRVTRHCHS--GAHVKISTRISGSLHPT 798

Query: 1168 ELKNICVSDPLSGYDEG-QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1226
            +     VSD    YD G  F P+        +K  V+ I ++     H  LS R S    
Sbjct: 799  D-----VSD---NYDAGISFLPVD-----SILKAVVIGIDKS---NNHATLSTRPSRFLP 842

Query: 1227 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1286
              T    L TD     + ++   +L     V+G+VK+V+  G F+ML R +DA+V +  L
Sbjct: 843  VKTG---LVTD-----REIKAFAELKTGDTVRGFVKSVSEHGLFVMLGRGIDARVQIKEL 894

Query: 1287 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1346
             + +V+  +  F   ++V G +LSV+ L+K+VE+T ++ D  T   ++    ++LH G  
Sbjct: 895  FNTFVKDWKSRFTANQVVKGSILSVDVLTKKVEMTFRSRD-LTRDGTDSFTFADLHQGQK 953

Query: 1347 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI----YRAGEKVKVKILKV 1402
            V G++KR+E YGLFI I+ + L GLCH SELS D+ D   T+    +R G+ VK  IL +
Sbjct: 954  VTGRVKRIELYGLFIEIDGSTLSGLCHKSELS-DNKDADVTVSLGNFREGDPVKALILSI 1012

Query: 1403 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV----AVQD 1458
            D+E RRIS G+K SYF  D        E + D  +++ G    S + +N  +     V D
Sbjct: 1013 DQENRRISFGLKPSYFVGD------DHEADMDIVLQDRGEGTMSVVCDNGELLAIREVVD 1066

Query: 1459 MDM---------ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGH----- 1504
             D          E ++ G  +LA I    + P  ++            + QN  H     
Sbjct: 1067 SDHSSRKDVSSGEQQNDGEDMLADI----ATPLTQL--------YTASLLQNSAHLLNLE 1114

Query: 1505 ------------TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFER 1552
                        +    + D    ++ K   K  ++ ++ A     +    P    +FE+
Sbjct: 1115 AFQWFDLGTLSESSSKSSEDGDLGQNKKTFRKGVKDGDLTAD----IHFQPPEAIADFEK 1170

Query: 1553 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1612
            L+  SPNSSF+WI+Y++F L ++++++AR +  RA+QTIN REE EKLN+W+A  NLEN 
Sbjct: 1171 LLLGSPNSSFLWIRYISFQLQLSELDRARELGRRAIQTINFREEQEKLNVWIAMLNLENT 1230

Query: 1613 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1672
            YG    + +   F+ AL+Y D K +HL L  ++E++E+++ A+E   +  +KF HS KVW
Sbjct: 1231 YGT--NDTLETTFKDALRYNDAKTLHLRLAAIFEQSEKHEKAEEQYIRACRKFSHSSKVW 1288

Query: 1673 LRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1731
                +  L+  + E  + ++  +L SL  +KH+K IS+ A +E+K G  +RG+++FEG +
Sbjct: 1289 TLFAEYYLRCGKLEQARRLLSASLHSLEINKHLKTISRFAQMEYKLGDPERGKTIFEGAV 1348

Query: 1732 SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1791
              +PKR DLWS+Y+D E     +  +R +F R  ++++     K+ FKK+L+ E+  G  
Sbjct: 1349 DSHPKRWDLWSVYIDMEAGQCAMQNLRDIFNRVFAINMTGHNAKYFFKKWLDLEQKFGHG 1408

Query: 1792 ERIEYVKQKAMEYVE 1806
            E    VK KAME+V+
Sbjct: 1409 EGAIAVKVKAMEWVQ 1423



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 183/759 (24%), Positives = 332/759 (43%), Gaps = 71/759 (9%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGL---------------RGLARAADALDPILDN 48
           + I  GMK++G +  ++   L++ LP  +               R  +  A+ + P   +
Sbjct: 97  KRIVPGMKIFGQIMFIHPLALIVSLPNRIVAHVPVTQVTSQLTERLESTPANTVQPGEYS 156

Query: 49  EIEANEDNL-----LPTIFHVGQLVSCIVLQL----DDDKKEIGK---------RKIWLS 90
            IE   ++      L  +F+ GQ V  IV+        D   +GK         R+I LS
Sbjct: 157 HIENGWNSSFHIPELAHLFYPGQYVRAIVIATHAAGSADVCGLGKVRNDAIRASRRIELS 216

Query: 91  LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL--AENSGID 148
           L    +  G+    +  G  ++A ++S+EDHGYI   G+   +GFL   +   A  +   
Sbjct: 217 LIPERVNAGVQKSDLTTGFTMSAALRSVEDHGYIFDLGISDTSGFLSFKDYRKAHVNTNH 276

Query: 149 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 208
              G L++  V  +    +   LS DP+ ++     ++  +S   ++PG MV + + S  
Sbjct: 277 FVVGSLVEVCVTEMSTDGRNCTLSVDPELLASASLSEVTHVSS--ILPGSMVQSLIISAK 334

Query: 209 ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR----AVGL 264
             G+ L  L +F G V+ FHL    P    + +Y   +KV AR+L+   +S     AV L
Sbjct: 335 PAGLNLKLLHFFNGVVNEFHL----PAGEME-EYKVGRKVKARVLYSVHSSPYPTFAVSL 389

Query: 265 TLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 324
             +   L  +       +G + +  +V +++   GL++++         +V IS ++++ 
Sbjct: 390 ADHIIGLKKKEEVESYPIGTVLEAVRVNKLEGEQGLIVEVQP---GVEGFVHISQISDDH 446

Query: 325 VRKLEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
           V  L     +K  +  R R+ G   L+G+    L+ S  E       ++  G V++G + 
Sbjct: 447 VLSLSATGPWKLNTIHRGRVTGLHPLDGILQLSLRRSVLEQKFLEAGEILVGEVLRGTIK 506

Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTH 440
            +      +     V  +    H ++  I  P  +FK+G  +  RVL + S  +RI +T 
Sbjct: 507 QMTKSALFISISANVDGVVWPNHYADIAIKHPTLRFKLGVSIKCRVLTIDSEQRRIVLTA 566

Query: 441 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
           KKTLV+S L ILSSY +    L+T   ++KI      V FYN V+   P  E+G   G +
Sbjct: 567 KKTLVESTLPILSSYDDDNIGLVTDAAVSKILDKAIQVEFYNNVKAIIPLQEVGQVTG-K 625

Query: 501 PSSMYHVGQVVKCRIMS-------SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV- 552
            +  + VG+VVK RI+S        + + R++ L+       ++    V++GS V G+V 
Sbjct: 626 LADEFSVGKVVKVRIISIDAKNQRMVASIRQVTLNVQSVAATITG---VEIGSTVEGIVT 682

Query: 553 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLLVLDN--ES 609
           ++ T N  +   +    +   I   +LA+H    +  ++  +K G   D+L+V+    E 
Sbjct: 683 EIHTRN--IALSLQPTQAPALISLRNLANHYGTTSAKLEMSLKVGDRVDRLVVVSRNLEK 740

Query: 610 SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
             +L+          ++       I    VV G V     +G  V+   R++G    +  
Sbjct: 741 DFVLVVGNLRGRAVIKKGAVSMDTIEIGQVVGGRVTRHCHSGAHVKISTRISGSLHPTDV 800

Query: 670 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            D   A +S    V   +++ ++ ++      TLS + S
Sbjct: 801 SDNYDAGIS-FLPVDSILKAVVIGIDKSNNHATLSTRPS 838


>gi|336376655|gb|EGO04990.1| hypothetical protein SERLA73DRAFT_157761 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1437

 Score =  338 bits (868), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 275/915 (30%), Positives = 452/915 (49%), Gaps = 112/915 (12%)

Query: 934  SSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 990
            SSYD   +G +  A +++I    ++++F       I + EV      V   L   F +G+
Sbjct: 586  SSYDDDNIGLVTDAAVSKILDKAIQVEFYNNVKAIIPLQEVG----QVTGKLADEFSVGK 641

Query: 991  TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1050
             V  RII+   K     +     SI+   L V  + + +      V IG  V G V ++ 
Sbjct: 642  VVKVRIISIDAKNQRMVA-----SIRQVTLNVQSVAATI----TGVEIGSTVEGIVTEIH 692

Query: 1051 NEWALLTISRHLKAQLFILD--SAYEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRL 1107
                 L++       L  L   + +  +   + +    +G  V   V+ S N EK  + L
Sbjct: 693  TRNIALSLQPTQAPALISLRNLANHYGTTSAKLEMSLKVGDRVDRLVVVSRNLEKDFV-L 751

Query: 1108 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1167
            V+   +     K   +S D ++     G +VGGR+++      G  V+I   + G +H T
Sbjct: 752  VVGNLRGRAVIKKGAVSMDTIEI----GQVVGGRVTRHCHS--GAHVKISTRISGSLHPT 805

Query: 1168 ELKNICVSDPLSGYDEG-QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1226
            +     VSD    YD G  F P+        +K  V+ I ++     H  LS R S    
Sbjct: 806  D-----VSD---NYDAGISFLPVD-----SILKAVVIGIDKS---NNHATLSTRPSRFLP 849

Query: 1227 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1286
              T    L TD     + ++   +L     V+G+VK+V+  G F+ML R +DA+V +  L
Sbjct: 850  VKTG---LVTD-----REIKAFAELKTGDTVRGFVKSVSEHGLFVMLGRGIDARVQIKEL 901

Query: 1287 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1346
             + +V+  +  F   ++V G +LSV+ L+K+VE+T ++ D  T   ++    ++LH G  
Sbjct: 902  FNTFVKDWKSRFTANQVVKGSILSVDVLTKKVEMTFRSRD-LTRDGTDSFTFADLHQGQK 960

Query: 1347 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI----YRAGEKVKVKILKV 1402
            V G++KR+E YGLFI I+ + L GLCH SELS D+ D   T+    +R G+ VK  IL +
Sbjct: 961  VTGRVKRIELYGLFIEIDGSTLSGLCHKSELS-DNKDADVTVSLGNFREGDPVKALILSI 1019

Query: 1403 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV----AVQD 1458
            D+E RRIS G+K SYF  D        E + D  +++ G    S + +N  +     V D
Sbjct: 1020 DQENRRISFGLKPSYFVGD------DHEADMDIVLQDRGEGTMSVVCDNGELLAIREVVD 1073

Query: 1459 MDM---------ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGH----- 1504
             D          E ++ G  +LA I    + P  ++            + QN  H     
Sbjct: 1074 SDHSSRKDVSSGEQQNDGEDMLADI----ATPLTQL--------YTASLLQNSAHLLNLE 1121

Query: 1505 ------------TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFER 1552
                        +    + D    ++ K   K  ++ ++ A     +    P    +FE+
Sbjct: 1122 AFQWFDLGTLSESSSKSSEDGDLGQNKKTFRKGVKDGDLTAD----IHFQPPEAIADFEK 1177

Query: 1553 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1612
            L+  SPNSSF+WI+Y++F L ++++++AR +  RA+QTIN REE EKLN+W+A  NLEN 
Sbjct: 1178 LLLGSPNSSFLWIRYISFQLQLSELDRARELGRRAIQTINFREEQEKLNVWIAMLNLENT 1237

Query: 1613 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1672
            YG    + +   F+ AL+Y D K +HL L  ++E++E+++ A+E   +  +KF HS KVW
Sbjct: 1238 YGT--NDTLETTFKDALRYNDAKTLHLRLAAIFEQSEKHEKAEEQYIRACRKFSHSSKVW 1295

Query: 1673 LRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1731
                +  L+  + E  + ++  +L SL  +KH+K IS+ A +E+K G  +RG+++FEG +
Sbjct: 1296 TLFAEYYLRCGKLEQARRLLSASLHSLEINKHLKTISRFAQMEYKLGDPERGKTIFEGAV 1355

Query: 1732 SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1791
              +PKR DLWS+Y+D E     +  +R +F R  ++++     K+ FKK+L+ E+  G  
Sbjct: 1356 DSHPKRWDLWSVYIDMEAGQCAMQNLRDIFNRVFAINMTGHNAKYFFKKWLDLEQKFGHG 1415

Query: 1792 ERIEYVKQKAMEYVE 1806
            E    VK KAME+V+
Sbjct: 1416 EGAIAVKVKAMEWVQ 1430



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 183/759 (24%), Positives = 332/759 (43%), Gaps = 71/759 (9%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGL---------------RGLARAADALDPILDN 48
           + I  GMK++G +  ++   L++ LP  +               R  +  A+ + P   +
Sbjct: 104 KRIVPGMKIFGQIMFIHPLALIVSLPNRIVAHVPVTQVTSQLTERLESTPANTVQPGEYS 163

Query: 49  EIEANEDNL-----LPTIFHVGQLVSCIVLQL----DDDKKEIGK---------RKIWLS 90
            IE   ++      L  +F+ GQ V  IV+        D   +GK         R+I LS
Sbjct: 164 HIENGWNSSFHIPELAHLFYPGQYVRAIVIATHAAGSADVCGLGKVRNDAIRASRRIELS 223

Query: 91  LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL--AENSGID 148
           L    +  G+    +  G  ++A ++S+EDHGYI   G+   +GFL   +   A  +   
Sbjct: 224 LIPERVNAGVQKSDLTTGFTMSAALRSVEDHGYIFDLGISDTSGFLSFKDYRKAHVNTNH 283

Query: 149 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 208
              G L++  V  +    +   LS DP+ ++     ++  +S   ++PG MV + + S  
Sbjct: 284 FVVGSLVEVCVTEMSTDGRNCTLSVDPELLASASLSEVTHVSS--ILPGSMVQSLIISAK 341

Query: 209 ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR----AVGL 264
             G+ L  L +F G V+ FHL    P    + +Y   +KV AR+L+   +S     AV L
Sbjct: 342 PAGLNLKLLHFFNGVVNEFHL----PAGEME-EYKVGRKVKARVLYSVHSSPYPTFAVSL 396

Query: 265 TLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 324
             +   L  +       +G + +  +V +++   GL++++         +V IS ++++ 
Sbjct: 397 ADHIIGLKKKEEVESYPIGTVLEAVRVNKLEGEQGLIVEVQP---GVEGFVHISQISDDH 453

Query: 325 VRKLEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
           V  L     +K  +  R R+ G   L+G+    L+ S  E       ++  G V++G + 
Sbjct: 454 VLSLSATGPWKLNTIHRGRVTGLHPLDGILQLSLRRSVLEQKFLEAGEILVGEVLRGTIK 513

Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTH 440
            +      +     V  +    H ++  I  P  +FK+G  +  RVL + S  +RI +T 
Sbjct: 514 QMTKSALFISISANVDGVVWPNHYADIAIKHPTLRFKLGVSIKCRVLTIDSEQRRIVLTA 573

Query: 441 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
           KKTLV+S L ILSSY +    L+T   ++KI      V FYN V+   P  E+G   G +
Sbjct: 574 KKTLVESTLPILSSYDDDNIGLVTDAAVSKILDKAIQVEFYNNVKAIIPLQEVGQVTG-K 632

Query: 501 PSSMYHVGQVVKCRIMS-------SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV- 552
            +  + VG+VVK RI+S        + + R++ L+       ++    V++GS V G+V 
Sbjct: 633 LADEFSVGKVVKVRIISIDAKNQRMVASIRQVTLNVQSVAATITG---VEIGSTVEGIVT 689

Query: 553 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLLVLDN--ES 609
           ++ T N  +   +    +   I   +LA+H    +  ++  +K G   D+L+V+    E 
Sbjct: 690 EIHTRN--IALSLQPTQAPALISLRNLANHYGTTSAKLEMSLKVGDRVDRLVVVSRNLEK 747

Query: 610 SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
             +L+          ++       I    VV G V     +G  V+   R++G    +  
Sbjct: 748 DFVLVVGNLRGRAVIKKGAVSMDTIEIGQVVGGRVTRHCHSGAHVKISTRISGSLHPTDV 807

Query: 670 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            D   A +S    V   +++ ++ ++      TLS + S
Sbjct: 808 SDNYDAGIS-FLPVDSILKAVVIGIDKSNNHATLSTRPS 845


>gi|302698227|ref|XP_003038792.1| hypothetical protein SCHCODRAFT_64843 [Schizophyllum commune H4-8]
 gi|300112489|gb|EFJ03890.1| hypothetical protein SCHCODRAFT_64843 [Schizophyllum commune H4-8]
          Length = 1461

 Score =  338 bits (868), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 232/694 (33%), Positives = 372/694 (53%), Gaps = 55/694 (7%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            G +V GR+++ +    G +V++   + G +H         SD    ++  +  PL   D 
Sbjct: 796  GQVVTGRVTRHVQK--GALVKVTAKVRGILH--------PSDVADDFNHVKGQPLPAVD- 844

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLS 1252
               VK  ++ I R  +     +L L        ST  S +S   D     K + +I DL 
Sbjct: 845  -AVVKAAIVGIDRENK-----QLIL--------STRPSRVSPQPDRSVRDKEIGEISDLH 890

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
                V+G++K+V   G F+ + R LDA+V +  L D YV+  +  F + ++V GR+L V+
Sbjct: 891  VGQTVRGFIKSVADHGLFVTVGRGLDARVQIKELFDDYVKEWKPRFKVNQVVEGRILQVD 950

Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
              SK++E+T +   S  A +S    +++L  G +V G + R+E YGL I I+ + L GLC
Sbjct: 951  AESKKIEMTFR---SEEALKSSTLTIADLKEGQVVDGTVNRIEPYGLLIQIQRSKLKGLC 1007

Query: 1373 HVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1429
              +E +++   +++     +RAG+KVK  ILK+    RRI+L +K S    DA  ++   
Sbjct: 1008 RKTEFTDNKDADVDAALEGFRAGDKVKACILKL--ADRRIALSLKPSRL-GDAGFVEDEE 1064

Query: 1430 EEESDEA-----IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVP--- 1481
             E+ DE      I +V +       E      Q +D ESEDG +    + +  A      
Sbjct: 1065 AEDDDEEEQEGIIRDVDAETSDEEDEEMPGQEQAVDDESEDGDAPEHDEDDDDADEDAIM 1124

Query: 1482 ---PLEVNLDDEQP-DMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEER 1537
               P EV     Q  ++  G   N G  +     +  +   ++ ++ E +++  R   E+
Sbjct: 1125 IDIPAEVTPAQSQSLELLGGFQWNTGAAEPESDAESSDGSDSETEQPERKKRNKRKEIEK 1184

Query: 1538 LLEKD----APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
             L  D    AP +  +FERL+  SPNSS++WI+YM+F L + +++KAR++A RAL TIN 
Sbjct: 1185 DLTADMHTKAPESTADFERLLLGSPNSSYLWIQYMSFQLQLGEMDKARALARRALSTINF 1244

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1653
            REENEKLN+W+A  NLEN YG   ++++   F+ A +  D K VHL L  ++E++ +   
Sbjct: 1245 REENEKLNVWIALLNLENAYGT--DDSLDATFKEAARANDSKTVHLRLAAIFEQSGKIDK 1302

Query: 1654 ADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAI 1712
             +E   K  KKF HS KVW    +  L++ + E  + ++ RAL SL + KHIK IS+ A 
Sbjct: 1303 TEEQFKKTAKKFGHSSKVWTLYGEFFLRRGEVEEARKLLPRALQSLEKRKHIKTISKFAQ 1362

Query: 1713 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1772
            LE+K    +RGR++FEGI+S +PKR D+WSIY+D E    ++  +R LF R +++ +   
Sbjct: 1363 LEYKMADPERGRTLFEGIVSIHPKRWDIWSIYMDMEATQSNIQSLRNLFNRVLAIKMTSH 1422

Query: 1773 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            K K  FKK+L+ E  +G+EE  E VK KA+E+ +
Sbjct: 1423 KAKSFFKKWLDLEHRLGDEEGAEQVKAKAIEWTQ 1456



 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 197/766 (25%), Positives = 339/766 (44%), Gaps = 77/766 (10%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPILDNEIEANEDNLL 58
           G K+ G +  V    L++ LP  L G          L  A DA+D    ++ +A     +
Sbjct: 120 GQKILGQIISVQPLALIVSLPNQLLGHVPITNISTQLTAALDAMDVDESDDEDAPAQTAV 179

Query: 59  PT---IFHVGQLVSCIVLQL----DDDKKEIGK---------RKIWLSLRLSLLYKGLSL 102
           P    IFH GQ V  +V  +      D   IG+         R++ LSL    +  G+  
Sbjct: 180 PDLDDIFHPGQYVRAVVATVHAPGTTDLSGIGRSRDEVVRASRRVELSLVPGKVNAGVQK 239

Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGLLLQGV 158
             ++EG  LTA V+S+EDHGYI+  G+P  +GFL   +    S  D    +  G L+   
Sbjct: 240 GDLKEGFTLTAAVQSVEDHGYIVDLGIPDVSGFLSFKDAPTTSTDDEDAKLPVGSLVNAT 299

Query: 159 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
           V  + +  +   +++DP   +     ++  ++   ++PG +V + + +    G+ L  + 
Sbjct: 300 VLKLSKNGRTCNVTADPAKFTSSFATEVTNVAA--VLPGTLVQSLITAASPTGLNLQVIG 357

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYLLHNRA 275
           +F GT+D  HL+         ND+N  KK+ AR+L+     P   A+ L  +   L +R 
Sbjct: 358 FFDGTIDEVHLRQ-----GSSNDWNVGKKIKARVLYNYSDSPPKLALALNEHIIALDSRK 412

Query: 276 --PPSHV--------KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 325
              P +          +G   + +K+VRV+   GL++ +         +V IS  ++E V
Sbjct: 413 IKNPDNTMTDFRERYPIGRTVENAKIVRVEPERGLIVQLEP---GVEGFVHISHTSDEHV 469

Query: 326 RKLEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 383
             L     +K GS  R R+ G+  L+GL    +K S  E      SDV+PG +VKG +  
Sbjct: 470 PSLSAAGAHKIGSTHRARVTGYFPLDGLLQLSMKPSILEQKYLQVSDVQPGQIVKGTIKK 529

Query: 384 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHK 441
           +      V   G +  +    H ++  + +PGK+FK GA +  RVL V    KRI++T K
Sbjct: 530 LTDSALFVSLSGNMDGVVWPNHYADIALKQPGKRFKAGASIKCRVLVVDEGRKRISLTAK 589

Query: 442 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           KTL+ S L +L+ Y +A   ++TH  + K+      V FYN ++   P  +    P    
Sbjct: 590 KTLIDSTLPVLARYEDAQVGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKDAVESPDQRL 649

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSFMM-----KPTRVSEDDLVKLGSLVSGVVDVVT 556
           +  + VG+ VK R+ S  P  RRI  S        +P  ++    V++G ++ G V  V 
Sbjct: 650 ADSFPVGKPVKVRLTSLEPEQRRIVASIRQAAGASQPVPLT---AVEIGDILPGKVTEVH 706

Query: 557 PNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDN--ESSNLL 613
               ++ +   G  +  +   ++A      A  +++ ++PG     L+V++   E   ++
Sbjct: 707 KEHALLTLQPSGV-RALVSLANVAMLRGVSAAQVRTALQPGEVLPDLVVVERSPEKGFVI 765

Query: 614 LSAKYSLINSAQQLPSDA-------SHIHPNSVVHGYVCNIIETGCFVRFLGRLTG-FAP 665
           +S K S   + +   + A              VV G V   ++ G  V+   ++ G   P
Sbjct: 766 VSGKPSKPKATKGADASAKPAAITLDTAEVGQVVTGRVTRHVQKGALVKVTAKVRGILHP 825

Query: 666 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
              A D           V   V++ I+ ++ E  ++ LS + S  S
Sbjct: 826 SDVADDFNHVKGQPLPAVDAVVKAAIVGIDRENKQLILSTRPSRVS 871



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 26/266 (9%)

Query: 461 RLITHGWITKIE-KHGCFVRFYNGVQGFAPRSELGLD--PGCEPSSMYHVGQVVKCRIMS 517
           R + +  I ++E + G  V+   GV+GF   S    +  P    +  + +G   + R+  
Sbjct: 431 RTVENAKIVRVEPERGLIVQLEPGVEGFVHISHTSDEHVPSLSAAGAHKIGSTHRARVTG 490

Query: 518 SIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 573
             P    + LS  MKP+ + +  L    V+ G +V G +  +T +A+  +V   G   G 
Sbjct: 491 YFPLDGLLQLS--MKPSILEQKYLQVSDVQPGQIVKGTIKKLTDSAL--FVSLSGNMDGV 546

Query: 574 IPTEHLADHLEHATVMKSVIKPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQ 626
           +   H AD         ++ +PG  F        ++LV+D     + L+AK +LI+S   
Sbjct: 547 VWPNHYADI--------ALKQPGKRFKAGASIKCRVLVVDEGRKRISLTAKKTLIDSTLP 598

Query: 627 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 686
           + +         V H  V  + +    V F   L    P   AV+     L+ ++ VG+ 
Sbjct: 599 VLARYEDAQVGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKDAVESPDQRLADSFPVGKP 658

Query: 687 VRSNILDVNSETGRITLSLKQSCCSS 712
           V+  +  +  E  RI  S++Q+  +S
Sbjct: 659 VKVRLTSLEPEQRRIVASIRQAAGAS 684



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 139/314 (44%), Gaps = 43/314 (13%)

Query: 917  KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 976
            KA    + S+   A    + +VG +V   +T        +K      G +H ++V DD +
Sbjct: 774  KATKGADASAKPAAITLDTAEVGQVVTGRVTRHVQKGALVKVTAKVRGILHPSDVADDFN 833

Query: 977  NVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVS---EIGSKLLF 1031
            +V         +   V A I+   + NK  +       LS +PS ++      +  K + 
Sbjct: 834  HVKGQPLP--AVDAVVKAAIVGIDRENKQLI-------LSTRPSRVSPQPDRSVRDKEIG 884

Query: 1032 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI--LDSAYEPSELQEFQRRFHIGK 1089
            E  D+ +GQ V G++  V +    +T+ R L A++ I  L   Y    ++E++ RF + +
Sbjct: 885  EISDLHVGQTVRGFIKSVADHGLFVTVGRGLDARVQIKELFDDY----VKEWKPRFKVNQ 940

Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1149
             V G +L ++ E K + +  R  ++ +   T+ I++      + EG +V G +++I    
Sbjct: 941  VVEGRILQVDAESKKIEMTFRS-EEALKSSTLTIAD------LKEGQVVDGTVNRIEP-- 991

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD-PLSGYDEGQFVKCKVLEISRT 1208
             GL++QI          ++LK +C     +   +   D  L G+  G  VK  +L+++  
Sbjct: 992  YGLLIQI--------QRSKLKGLCRKTEFTDNKDADVDAALEGFRAGDKVKACILKLADR 1043

Query: 1209 VRGTFHVELSLRSS 1222
                  + LSL+ S
Sbjct: 1044 -----RIALSLKPS 1052



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 124/568 (21%), Positives = 227/568 (39%), Gaps = 77/568 (13%)

Query: 842  DLGVHQTVNAIVEIVKEN-YLV-LSLPEYNHSIGY----ASVSDYNTQKFPQKQFLNGQS 895
            DL    T+ A V+ V+++ Y+V L +P+ +  + +     + +D    K P    +N   
Sbjct: 241  DLKEGFTLTAAVQSVEDHGYIVDLGIPDVSGFLSFKDAPTTSTDDEDAKLPVGSLVN--- 297

Query: 896  VIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELR 955
              ATV+ L   S  GR   +    ++  +S +      ++   G+LVQ+ IT   P  L 
Sbjct: 298  --ATVLKL---SKNGRTCNVTADPAKFTSSFATEVTNVAAVLPGTLVQSLITAASPTGLN 352

Query: 956  LKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK-SNKPDMKKSFLWELS 1014
            L+    F G I    +    SN       ++ +G+ + AR++   S+ P      L E  
Sbjct: 353  LQVIGFFDGTIDEVHLRQGSSN-------DWNVGKKIKARVLYNYSDSPPKLALALNEHI 405

Query: 1015 IKPSMLTVSEIGSKLLFEECDVSIGQRV-TGYVYKVDNEWALLT-ISRHLKAQLFILDSA 1072
            I      +    + +        IG+ V    + +V+ E  L+  +   ++  + I  ++
Sbjct: 406  IALDSRKIKNPDNTMTDFRERYPIGRTVENAKIVRVEPERGLIVQLEPGVEGFVHISHTS 465

Query: 1073 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1132
             E            IG      V        LL+L ++P    +  K + +S+      +
Sbjct: 466  DEHVPSLSAAGAHKIGSTHRARVTGYFPLDGLLQLSMKP--SILEQKYLQVSD------V 517

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
              G IV G I K+      L V +  ++ G V      +I +  P      G+      +
Sbjct: 518  QPGQIVKGTIKKLTDS--ALFVSLSGNMDGVVWPNHYADIALKQP------GKR-----F 564

Query: 1193 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
              G  +KC+VL +     G   + L+ + +L              +D+    L + ED  
Sbjct: 565  KAGASIKCRVLVVDE---GRKRISLTAKKTL--------------IDSTLPVLARYEDAQ 607

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE----FPIGKLVAGRV 1308
              M+    V  V  K   +     L A V   +     VESP++     FP+GK V  R+
Sbjct: 608  VGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKD----AVESPDQRLADSFPVGKPVKVRL 663

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN- 1367
             S+EP  +R+  +++    + A  S+   L+ + +GDI+ G++  V      +T++ +  
Sbjct: 664  TSLEPEQRRIVASIR----QAAGASQPVPLTAVEIGDILPGKVTEVHKEHALLTLQPSGV 719

Query: 1368 --LVGLCHVSELSEDHVDNIETIYRAGE 1393
              LV L +V+ L       + T  + GE
Sbjct: 720  RALVSLANVAMLRGVSAAQVRTALQPGE 747



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 8/173 (4%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            ++ D+ P  IV+G +K +T    F+ LS  +D  V  ++ +D  ++ P K F  G  +  
Sbjct: 513  QVSDVQPGQIVKGTIKKLTDSALFVSLSGNMDGVVWPNHYADIALKQPGKRFKAGASIKC 572

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITI 1363
            RVL V+   KR+ +T K    +T   S +  L+   +  VG +    + +V    L +  
Sbjct: 573  RVLVVDEGRKRISLTAK----KTLIDSTLPVLARYEDAQVGMVTHAVVFKVFDKHLMVEF 628

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             N NL  +    +  E     +   +  G+ VKV++  ++ E+RRI   ++ +
Sbjct: 629  YN-NLKAIVPAKDAVESPDQRLADSFPVGKPVKVRLTSLEPEQRRIVASIRQA 680



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 139/653 (21%), Positives = 256/653 (39%), Gaps = 93/653 (14%)

Query: 209  ENGVMLSFLTYFTGTVDIFHLQNT-FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 267
            E G+++       G V I H  +   P+ +    +       AR+    P    + L++ 
Sbjct: 444  ERGLIVQLEPGVEGFVHISHTSDEHVPSLSAAGAHKIGSTHRARVTGYFPLDGLLQLSMK 503

Query: 268  PYLLHNR-APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 326
            P +L  +    S V+ G I   +     D  L + L      V  P +   +D+A   ++
Sbjct: 504  PSILEQKYLQVSDVQPGQIVKGTIKKLTDSALFVSLSGNMDGVVWPNH--YADIA---LK 558

Query: 327  KLEKKYKEGSCVRVRIL----GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
            +  K++K G+ ++ R+L    G + +   A   L  S    L   + D + GMV    V 
Sbjct: 559  QPGKRFKAGASIKCRVLVVDEGRKRISLTAKKTLIDSTLPVLA-RYEDAQVGMVTHAVVF 617

Query: 383  AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSKRITVTH 440
             V     +V+F   +KA+ P     E    +    F VG  +  R+  L  + +RI  + 
Sbjct: 618  KVFDKHLMVEFYNNLKAIVPAKDAVESPDQRLADSFPVGKPVKVRLTSLEPEQRRIVASI 677

Query: 441  KKTLVKSKLAILSSYAEATDRLITHGWITKIEK-HGCFVRFYNGVQGFAPRSELGLDPGC 499
            ++    S+   L++  E  D  I  G +T++ K H       +GV+     + + +  G 
Sbjct: 678  RQAAGASQPVPLTAV-EIGD--ILPGKVTEVHKEHALLTLQPSGVRALVSLANVAMLRGV 734

Query: 500  EPSSMYHVGQ--------VVKCR-------IMSSIPASRRIN--LSFMMKPTRVSEDDLV 542
              + +    Q        VV  R       I+S  P+  +         KP  ++ D   
Sbjct: 735  SAAQVRTALQPGEVLPDLVVVERSPEKGFVIVSGKPSKPKATKGADASAKPAAITLD-TA 793

Query: 543  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-----TVMKSVIKPGY 597
            ++G +V+G V        +V V AK   +G +    +AD   H        + +V+K   
Sbjct: 794  EVGQVVTGRVTRHVQKGALVKVTAK--VRGILHPSDVADDFNHVKGQPLPAVDAVVKAA- 850

Query: 598  EFDQLLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETG 651
                ++ +D E+  L+LS + S ++             + S +H    V G++ ++ + G
Sbjct: 851  ----IVGIDRENKQLILSTRPSRVSPQPDRSVRDKEIGEISDLHVGQTVRGFIKSVADHG 906

Query: 652  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
             FV     L       +  D    +    + V Q V   IL V++E+ +I ++       
Sbjct: 907  LFVTVGRGLDARVQIKELFDDYVKEWKPRFKVNQVVEGRILQVDAESKKIEMT------- 959

Query: 712  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 771
                      F  EE    L+SS    ++LK       G V++G V+    +G+++   +
Sbjct: 960  ----------FRSEE---ALKSSTLTIADLKE------GQVVDGTVNRIEPYGLLIQI-Q 999

Query: 772  HSDVYGFITHHQLA-------GATVE---SGSVIQAAILDVAKAERLVDLSLK 814
             S + G     +          A +E   +G  ++A IL +  A+R + LSLK
Sbjct: 1000 RSKLKGLCRKTEFTDNKDADVDAALEGFRAGDKVKACILKL--ADRRIALSLK 1050



 Score = 47.8 bits (112), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 114/526 (21%), Positives = 204/526 (38%), Gaps = 73/526 (13%)

Query: 87  IWLSLRLSLL-YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-- 143
           + LS++ S+L  K L +  VQ G ++   +K + D    +     +  G +  N+ A+  
Sbjct: 498 LQLSMKPSILEQKYLQVSDVQPGQIVKGTIKKLTDSALFVSLS-GNMDGVVWPNHYADIA 556

Query: 144 --NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVP----- 196
               G   K G  ++  V  +D  RK + L++             K   ID  +P     
Sbjct: 557 LKQPGKRFKAGASIKCRVLVVDEGRKRISLTA-------------KKTLIDSTLPVLARY 603

Query: 197 -----GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 251
                GM+    V  + +  +M+ F       V       + P     + +   K V  R
Sbjct: 604 EDAQVGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKDAVES-PDQRLADSFPVGKPVKVR 662

Query: 252 ILFVDPTSRAVGLTLNPYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPS---T 307
           +  ++P  R +  ++      ++  P + V++GDI    KV  V +   LL   PS    
Sbjct: 663 LTSLEPEQRRIVASIRQAAGASQPVPLTAVEIGDIL-PGKVTEVHKEHALLTLQPSGVRA 721

Query: 308 PVSTPAYVTISDVAEEEVRK-------------LEKKYKEGSCVRVRILGFRHLEGLATG 354
            VS      +  V+  +VR              +E+  ++G      I+  +  +  AT 
Sbjct: 722 LVSLANVAMLRGVSAAQVRTALQPGEVLPDLVVVERSPEKGFV----IVSGKPSKPKATK 777

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA-LCPLPHMSEFEIVK 413
              ASA    + T    + G VV G+V      GA+V+    V+  L P     +F  VK
Sbjct: 778 GADASAKPAAI-TLDTAEVGQVVTGRVTRHVQKGALVKVTAKVRGILHPSDVADDFNHVK 836

Query: 414 ----PGKKFKVGAELVF-------RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL 462
               P     V A +V         +L  +  R++    +++   ++  +S         
Sbjct: 837 GQPLPAVDAVVKAAIVGIDRENKQLILSTRPSRVSPQPDRSVRDKEIGEISDLHVGQ--- 893

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
              G+I  +  HG FV    G+       EL  D   E    + V QVV+ RI+     S
Sbjct: 894 TVRGFIKSVADHGLFVTVGRGLDARVQIKELFDDYVKEWKPRFKVNQVVEGRILQVDAES 953

Query: 523 RRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 564
           ++I ++F     +K + ++  DL K G +V G V+ + P  +++ +
Sbjct: 954 KKIEMTFRSEEALKSSTLTIADL-KEGQVVDGTVNRIEPYGLLIQI 998



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 108/496 (21%), Positives = 198/496 (39%), Gaps = 103/496 (20%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            ++   GM    VV +V +K L++     L+ +  A DA++         + D  L   F 
Sbjct: 604  EDAQVGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKDAVE---------SPDQRLADSFP 654

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSL-LYKGLSLETVQEGMVLTAYVKSIEDHG 122
            VG+ V   +  L+ +     +R+I  S+R +    + + L  V+ G +L   V  +    
Sbjct: 655  VGKPVKVRLTSLEPE-----QRRIVASIRQAAGASQPVPLTAVEIGDILPGKVTEVHKEH 709

Query: 123  YILHFGLPSFTGFLPRNNLAENSGID-------VKPGLLLQGVVRSIDRT--RKVVYLSS 173
             +L          +   N+A   G+        ++PG +L  +V  ++R+  +  V +S 
Sbjct: 710  ALLTLQPSGVRALVSLANVAMLRGVSAAQVRTALQPGEVLPDLV-VVERSPEKGFVIVSG 768

Query: 174  DPDTVSKCVTKDLK----GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 229
             P         D       I++D    G +V+ RV   ++ G ++       G   I H 
Sbjct: 769  KPSKPKATKGADASAKPAAITLDTAEVGQVVTGRVTRHVQKGALVKVTAKVRG---ILH- 824

Query: 230  QNTFPTTNWKNDYNQHKK---------VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV 280
                  ++  +D+N  K          V A I+ +D  ++ + L+  P  +  + P   V
Sbjct: 825  -----PSDVADDFNHVKGQPLPAVDAVVKAAIVGIDRENKQLILSTRPSRVSPQ-PDRSV 878

Query: 281  K---VGDIYDQ--SKVVR------VDRGL----GLLLDIPSTPVSTPAYVTISDVAEEEV 325
            +   +G+I D    + VR       D GL    G  LD         A V I ++ ++ V
Sbjct: 879  RDKEIGEISDLHVGQTVRGFIKSVADHGLFVTVGRGLD---------ARVQIKELFDDYV 929

Query: 326  RKLEKKYKEGSCVRVRIL-----------GFRHLEGLATGILKASAFEGLVFTHSDVKPG 374
            ++ + ++K    V  RIL            FR  E L +  L          T +D+K G
Sbjct: 930  KEWKPRFKVNQVVEGRILQVDAESKKIEMTFRSEEALKSSTL----------TIADLKEG 979

Query: 375  MVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKPG------KKFKVGAELVFR 427
             VV G V  ++ +G ++Q     +K LC     +EF   K        + F+ G ++   
Sbjct: 980  QVVDGTVNRIEPYGLLIQIQRSKLKGLC---RKTEFTDNKDADVDAALEGFRAGDKVKAC 1036

Query: 428  VLGVKSKRITVTHKKT 443
            +L +  +RI ++ K +
Sbjct: 1037 ILKLADRRIALSLKPS 1052


>gi|403260160|ref|XP_003922550.1| PREDICTED: protein RRP5 homolog [Saimiri boliviensis boliviensis]
          Length = 1838

 Score =  337 bits (863), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 364/1401 (25%), Positives = 624/1401 (44%), Gaps = 187/1401 (13%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
            +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78   ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLF 137

Query: 58   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
             LP +F  G LV C+V  L   ++  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138  HLPELFSPGMLVRCVVSSLGVTER--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117  SIEDHGYILHFGLPSFTGFLP-----RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLP      N   +N G  +K G  L  ++  +     VV+L
Sbjct: 196  SLEDHGYLVDIGVDGTRAFLPLLKAQENIRQKNKGAKLKVGQYLNCIIEEVKGNGGVVHL 255

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S     VS  +  + +  +++ L+PG++V  +VQ +   G+ML+FLT+FTG VD  HL  
Sbjct: 256  SIGHSEVSAAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLMLNFLTFFTGVVDFMHLDP 315

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQ 288
                T + N     + V A IL V P +R V L+L P  L    P S +    +G + + 
Sbjct: 316  KKAGTYFSN-----QAVKACILCVHPRTRVVRLSLRPIFLQPGRPLSRLSCQHLGAVLND 370

Query: 289  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
              V    +  G +  +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371  VPVHGFFKKAGAIFRLKDGVL---AYARLSHLSDSKNVFSPEAFKPGNTHKCRIIDYSQM 427

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
            + LA   L+ S  E     + D+KPG VVKG V+ +  +G +V+    ++ L P  H+++
Sbjct: 428  DELALLSLRTSIIEAQYLRYHDIKPGAVVKGTVLTIKPYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409  FEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
              +  P KK+ +G E       VK +RI  + K         +++ +   + RL      
Sbjct: 488  ILMKNPEKKYHIGDE-------VKCRRINSSTK---------VVNWFIIGSVRLDAKPAR 531

Query: 469  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
             ++       R  +G    A RS   +   C    ++H  QVVK  +++S P+  R+ LS
Sbjct: 532  KEL-------RCTSGRH--AARSAGRVGQAC---VVFH--QVVKVAVLNSEPSKERMLLS 577

Query: 529  FMM----KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
            F +    +P +        +   + +G LV   V   T + + V V+        +PT H
Sbjct: 578  FKLLRDPEPKKEPAGHNQKKGKAINVGQLVDVKVLEKTKDGLEVAVLPHNTC-AFLPTSH 636

Query: 579  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 636
            L+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S IHP
Sbjct: 637  LSDHVTNGPLLHHWLQAGDTLHRVLCLSQSEGHILLCRKPALVSAVEGGQDPKNFSEIHP 696

Query: 637  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ 
Sbjct: 697  GMLLVGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDE 756

Query: 697  ETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIGSV 752
            E  R+ LSL+ S C   D +      L +  E++  ++S  S  +   ++ +     G  
Sbjct: 757  EKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMF 816

Query: 753  IEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 811
            ++  V E   D  VV S     ++    + +   G  VESG   +  IL+V   +  V +
Sbjct: 817  LDLVVQEVLEDGSVVFSGGPVPNLVLRASRYHRGGQEVESGQKKKVVILNVDLLKLEVHV 876

Query: 812  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
            SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL    H 
Sbjct: 877  SLHQDLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVATGHL 918

Query: 872  IGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 930
            + ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R 
Sbjct: 919  VAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPTRK 976

Query: 931  K-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 971
                                KK +  +G +V   +  IKP  + +    G  G IH + +
Sbjct: 977  DSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLKDGIIGCIHASHI 1036

Query: 972  NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSM 1019
             DD         +  K+G+TVTAR+I      DMK   FL            ELS++PS 
Sbjct: 1037 LDDVPEGTSPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTVPELSVRPSE 1092

Query: 1020 L----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSA 1072
            L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++
Sbjct: 1093 LEDGHTALNTDSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTS 1152

Query: 1073 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1132
                 L+   ++F +G+A+   V+  +  K  LRL L             I    ++   
Sbjct: 1153 LSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLRLSL-------------IGPHKLE--- 1196

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
             EG++  GR+ K+     GL V      +G++    L    VSD  S        PL  +
Sbjct: 1197 -EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSL--FHVSDSYSEM------PLEDF 1243

Query: 1193 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
               + V+C +L     V     + LSLR      SS  + +  + V+ P   +  I+D+ 
Sbjct: 1244 VPQKVVRCYILSAEDNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIK 1290

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAG 1306
               +++GYV+++   G F  L   +   V L+        SP K+       P GKL+  
Sbjct: 1291 EGQLLRGYVRSIQPHGVFFGLGPSV---VGLARYPYVSQHSPSKKALYNKHLPEGKLLTA 1347

Query: 1307 RVLSVEPLSKRVEVTLKTSDS 1327
            RVL +      VE++    D+
Sbjct: 1348 RVLRLNHQKNLVELSFLPGDT 1368



 Score =  289 bits (740), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 147/331 (44%), Positives = 222/331 (67%), Gaps = 16/331 (4%)

Query: 1479 SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERL 1538
            ++PPL  + D E+ +  +  +Q            +K ++  ++ EK++ E+E+   EE L
Sbjct: 1516 ALPPLAESSDSEEDEKPHQATQ------------KKKSKKERELEKQKAEKELSRIEEAL 1563

Query: 1539 LEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1597
            ++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE 
Sbjct: 1564 MDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQ 1623

Query: 1598 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1657
            EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL
Sbjct: 1624 EKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGEL 1681

Query: 1658 LYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFK 1716
              +M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+
Sbjct: 1682 YNRMLKRFRQEKAVWIKYGAFLLRRSQAGASHCVLQRALECLPSKEHVDVIAKFAQLEFQ 1741

Query: 1717 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1776
             G  +R +++FE  L+ YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PKKMKF
Sbjct: 1742 LGDPERAKAIFENTLTTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKKMKF 1801

Query: 1777 LFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1802 FFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1832



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
            N S +H G +++G +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V 
Sbjct: 690  NFSEIHPGMLLVGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVV 748

Query: 1397 VKILKVDKEKRRISLGMKSS 1416
             K+  VD+EK+R+ L ++ S
Sbjct: 749  AKVTNVDEEKQRMLLSLRLS 768



 Score = 42.4 bits (98), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 104/209 (49%), Gaps = 22/209 (10%)

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1271
            F V  +LR+++ G    +SS     +   G H  K+E+     +  G V  VT ++G  +
Sbjct: 1165 FRVGQALRATVVG---PDSSKAFLRLSLIGPH--KLEE---GEVAMGRVVKVTPNEGLTV 1216

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
                     V L ++SD Y E P ++F   K+V   +LS E     + ++L++S +   +
Sbjct: 1217 SFPFGKIGTVSLFHVSDSYSEMPLEDFVPQKVVRCYILSAE--DNVLTLSLRSSRTNPET 1274

Query: 1332 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
            +S     EIN++ ++  G ++ G ++ ++ +G+F  +   ++VGL     +S+ H  + +
Sbjct: 1275 KSKVEDPEINSIQDIKEGQLLRGYVRSIQPHGVFFGL-GPSVVGLARYPYVSQ-HSPSKK 1332

Query: 1387 TIYRA----GEKVKVKILKVDKEKRRISL 1411
             +Y      G+ +  ++L+++ +K  + L
Sbjct: 1333 ALYNKHLPEGKLLTARVLRLNHQKNLVEL 1361


>gi|159489442|ref|XP_001702706.1| RNA binding rRNA processing protein [Chlamydomonas reinhardtii]
 gi|158280728|gb|EDP06485.1| RNA binding rRNA processing protein [Chlamydomonas reinhardtii]
          Length = 1280

 Score =  335 bits (860), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 157/298 (52%), Positives = 222/298 (74%), Gaps = 4/298 (1%)

Query: 1516 NRHAKKKEKEEREQEIRAAE-ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1574
            ++ AKK+ KE+ E+EIR AE  RL    AP+TP +FERLV +SPNSSFVWIKYMA  + +
Sbjct: 981  SKAAKKRLKEQHEREIREAELARLSGTAAPQTPADFERLVLASPNSSFVWIKYMAHHIGL 1040

Query: 1575 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN--PPEEAVVKVFQRALQYC 1632
             D++ AR +A+RAL +IN REE EK N+WVA+ NLEN +G    PEEA + + +RAL Y 
Sbjct: 1041 GDMDAARKVAQRALDSINYREEGEKFNVWVAWLNLENAFGTQPSPEEAAMGLLRRALSYT 1100

Query: 1633 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR-LLKQQQEGVQAVV 1691
            D KK+++A LG++ER+ + +LA+++   + KKF  SCKVW+R ++R L+K   EG + ++
Sbjct: 1101 DQKKMYMAALGIFERSGKEELAEQVAKTLTKKFGGSCKVWVRALERALVKDDGEGARKLL 1160

Query: 1692 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1751
            +RA  SLP  KHIK +++ A+ EF+ G A+RGR + EG+L  YPKR DLW++Y+DQEI+ 
Sbjct: 1161 ERATQSLPGRKHIKLLTRAALSEFRLGSAERGRGILEGVLRNYPKRLDLWNVYIDQEIKT 1220

Query: 1752 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
            G+   IR LFERA  L LPPKKMKFLF++YLEYEK  G++  +E+VK++AME+VE++L
Sbjct: 1221 GEQPRIRALFERATHLPLPPKKMKFLFRRYLEYEKEEGDDASVEHVKRRAMEFVENSL 1278



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 157/598 (26%), Positives = 254/598 (42%), Gaps = 110/598 (18%)

Query: 851  AIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSV--IATVMALPSSST 908
            A V+  ++ + VL  P    S   A + DY  ++    Q L G  V     V  L     
Sbjct: 426  ATVDAARQRFTVLLRPSATASSDAAYLIDY-FREMAALQVLRGDEVKDFGLVADLDGHPD 484

Query: 909  AGRLLLLLKA-ISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI- 966
             G + L LK  ++     ++   +       G+ V+A +  I+P E  L   +  H  + 
Sbjct: 485  VGLVELSLKPELTAAAKDAAASKEALRKLKPGTQVEAVVEGIRPGEY-LILSLPSHAHLL 543

Query: 967  ---HITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1023
                IT+ N  + + V   F+     Q V A ++ +    +  K  + +LS++PS L ++
Sbjct: 544  AYAAITDFNTPRPDAVPRKFT-----QVVEAVVLGRLQGGEGHKRGVMDLSLRPSRLAIA 598

Query: 1024 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1083
                K   +   V +G  V G                  +   F+L    EP        
Sbjct: 599  R---KAEPQAPPVVLGDLVPGQ-----------------QLTCFVL----EP-------- 626

Query: 1084 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1143
                G  V   VL++N +K  L L L P                      EG +V GRI 
Sbjct: 627  ----GAPVLARVLAVNAKKHTLDLSLAPLP-------------------AEGALVMGRI- 662

Query: 1144 KILSGVG-GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
              LS  G G+ V +GP   GRV  T++ +  V D L+G  EG +           V+ +V
Sbjct: 663  --LSASGAGVRVSLGPKRAGRVALTDIHDAAVPDALAGLTEGTY-----------VRVRV 709

Query: 1203 LEISRTVRGTFHVELSLRSS-------------------LDGMSSTNSSDLSTDVDTPGK 1243
            L       G F V LSLR S                           ++        P  
Sbjct: 710  LGKD----GDFAV-LSLRPSRGGAIAGAAGAAGAAAAAGGKKGKDAAAAKDQAAAAAPQP 764

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
             L  +  +     + GYVK   +KG F+ L R  D ++ L NLSDG++E P   FP G  
Sbjct: 765  ELLDVSGVKVGDSLGGYVKRCDAKGVFVALDRYRDGRIKLGNLSDGFIEDPAAAFPPGCR 824

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            +  RV+++E    R+E++L+T+    +S + I +L+ L  G +V G+++RVE +G+F+ +
Sbjct: 825  LEARVVALE-ADGRLELSLRTAPRSGSSGAAIQSLAELKEGQLVSGRVRRVEKFGVFVEV 883

Query: 1364 E-NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1420
            E N+++VGL H+SEL++  V +I  +++  + VK  + K+D    R+SL MK S  + 
Sbjct: 884  EGNSSVVGLAHISELADGAVKDISALFKPKQAVKAVVTKIDAAANRLSLSMKPSVLQQ 941



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 134/634 (21%), Positives = 234/634 (36%), Gaps = 183/634 (28%)

Query: 632  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
              +   +++ GYV N+     +VRFL  LTG A   +  D   ++  + +  GQSVR  +
Sbjct: 366  GEVSEGALLSGYVANVTGDAVYVRFLAGLTGRAGLPQLSDVFVSNPRELFAEGQSVRCLV 425

Query: 692  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 751
              V++   R T+ L+ S  +S+DA+++ ++F    ++A LQ                   
Sbjct: 426  ATVDAARQRFTVLLRPSATASSDAAYLIDYF---REMAALQ------------------- 463

Query: 752  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 811
            V+ G   E  DFG+V   + H DV                                LV+L
Sbjct: 464  VLRG--DEVKDFGLVADLDGHPDVG-------------------------------LVEL 490

Query: 812  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN-YLVLSLPEYNH 870
            SLK       ++A ++++A +K         L     V A+VE ++   YL+LSLP + H
Sbjct: 491  SLKPELTAAAKDAAASKEALRK---------LKPGTQVEAVVEGIRPGEYLILSLPSHAH 541

Query: 871  SIGYASVSDYNT-------QKFPQ-------KQFLNGQSVIATVMALPSSSTAGRLLLLL 916
             + YA+++D+NT       +KF Q        +   G+     VM L  S    RL +  
Sbjct: 542  LLAYAAITDFNTPRPDAVPRKFTQVVEAVVLGRLQGGEGHKRGVMDL--SLRPSRLAIAR 599

Query: 917  KAISET-------------------ETSSSKRAK------KKSSYDV--------GSLVQ 943
            KA  +                    E  +   A+      KK + D+        G+LV 
Sbjct: 600  KAEPQAPPVVLGDLVPGQQLTCFVLEPGAPVLARVLAVNAKKHTLDLSLAPLPAEGALVM 659

Query: 944  AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 1003
              I       +R+  G    GR+ +T+++D     V +  +    G  V  R++ K    
Sbjct: 660  GRILSASGAGVRVSLGPKRAGRVALTDIHD---AAVPDALAGLTEGTYVRVRVLGKDGD- 715

Query: 1004 DMKKSFLWELSIKPSMLTVSEIGSKL------------------------------LFEE 1033
                     LS++PS        +                                L + 
Sbjct: 716  ------FAVLSLRPSRGGAIAGAAGAAGAAAAAGGKKGKDAAAAKDQAAAAAPQPELLDV 769

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL--------FILDSAYEPSELQEFQRRF 1085
              V +G  + GYV + D +   + + R+   ++        FI D A            F
Sbjct: 770  SGVKVGDSLGGYVKRCDAKGVFVALDRYRDGRIKLGNLSDGFIEDPAAA----------F 819

Query: 1086 HIGKAVTGHVLSINKEKKL---LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1142
              G  +   V+++  + +L   LR   R    G + +++          + EG +V GR+
Sbjct: 820  PPGCRLEARVVALEADGRLELSLRTAPRSGSSGAAIQSL--------AELKEGQLVSGRV 871

Query: 1143 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1176
             ++      + V+    + G  H +EL +  V D
Sbjct: 872  RRVEKFGVFVEVEGNSSVVGLAHISELADGAVKD 905



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG 34
           +N+S G KLWG+V EV  + LVI LP GLRG
Sbjct: 116 KNLSVGTKLWGMVLEVTPRGLVISLPHGLRG 146



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 3/127 (2%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            ++S   ++ GYV NVT    ++     L  +  L  LSD +V +P + F  G+ V   V 
Sbjct: 367  EVSEGALLSGYVANVTGDAVYVRFLAGLTGRAGLPQLSDVFVSNPRELFAEGQSVRCLVA 426

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
            +V+   +R  V L+ S + ++  +  I+    +    ++ G    V+ +GL   ++    
Sbjct: 427  TVDAARQRFTVLLRPSATASSDAAYLIDYFREMAALQVLRGD--EVKDFGLVADLDGHPD 484

Query: 1369 VGLCHVS 1375
            VGL  +S
Sbjct: 485  VGLVELS 491



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 47/252 (18%), Positives = 110/252 (43%), Gaps = 46/252 (18%)

Query: 311 TPAYVTISDVAEEEVRKLE------KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGL 364
            PA+  +++  E +V+  E      KK+K G+ +  R++G+R ++G+AT  ++ S     
Sbjct: 229 APAFCHVANALETKVKPEEAAADMTKKFKAGAKLPARVIGYRLMDGMATVTVRPSQV--- 285

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF------ 418
                    G  V+ +V+  ++  A    P           ++  E   PG ++      
Sbjct: 286 ---------GEKVEARVL--EALLAPKAAP-----------LASLEAAVPGGRYSGLVTG 323

Query: 419 ---KVGAELVF---RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
              ++G  + F    V    +  + +   +T  +   ++  ++ E ++  +  G++  + 
Sbjct: 324 FHDRLGVFVTFFGGVVGAAAAAELGLQPGQT-AQDVFSVGQAFGEVSEGALLSGYVANVT 382

Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 532
               +VRF  G+ G A   +L       P  ++  GQ V+C +++++ A+R+   + +++
Sbjct: 383 GDAVYVRFLAGLTGRAGLPQLSDVFVSNPRELFAEGQSVRC-LVATVDAARQ-RFTVLLR 440

Query: 533 PTRVSEDDLVKL 544
           P+  +  D   L
Sbjct: 441 PSATASSDAAYL 452



 Score = 42.4 bits (98), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 92/230 (40%), Gaps = 59/230 (25%)

Query: 376 VVKGKVIAVDSFGAIVQFP-------GGVKALCPLPHMSEFEIVKP-------GKKFKVG 421
           V K +V+ VD+F              G   A C + +  E + VKP        KKFK G
Sbjct: 201 VRKAEVMRVDAFAGPGLLLRLPGLPEGPAPAFCHVANALETK-VKPEEAAADMTKKFKAG 259

Query: 422 AELVFRVLGVK--SKRITVTHK-------------KTLVKSKLAILSSYAEATDRLITHG 466
           A+L  RV+G +      TVT +             + L+  K A L+S   A       G
Sbjct: 260 AKLPARVIGYRLMDGMATVTVRPSQVGEKVEARVLEALLAPKAAPLASLEAAVPGGRYSG 319

Query: 467 WITKI-EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 525
            +T   ++ G FV F+ GV G A  +ELGL PG     ++ VGQ                
Sbjct: 320 LVTGFHDRLGVFVTFFGGVVGAAAAAELGLQPGQTAQDVFSVGQAF-------------- 365

Query: 526 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                     VSE      G+L+SG V  VT +AV V  +A    +  +P
Sbjct: 366 --------GEVSE------GALLSGYVANVTGDAVYVRFLAGLTGRAGLP 401


>gi|392578567|gb|EIW71695.1| hypothetical protein TREMEDRAFT_27162 [Tremella mesenterica DSM 1558]
          Length = 1475

 Score =  335 bits (860), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 335/1252 (26%), Positives = 569/1252 (45%), Gaps = 184/1252 (14%)

Query: 619  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 678
            +L+ S Q+  S+   + P  +V   +  ++ +G  V+  G   G    +    G  +D+ 
Sbjct: 329  TLVRSEQKAVSEVGSLLPGHLVIALITAVVPSGLNVKISGFYDGTIEVAHLPLGD-SDID 387

Query: 679  KTYYVGQSVRSNIL-DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ-SSKH 736
              Y VG+ V++ ++ + NS   R                    HF L     ++  SS  
Sbjct: 388  DKYKVGKKVQARVIYEANSHDPR--------------------HFSLSALPHIITFSSPT 427

Query: 737  NGSELKWVEGFIIGSVIEG--KVHESNDFGVVVSFEEHSDVYGFITH------HQLAGAT 788
              + +   +G  IG V +    V    ++GV+   ++  D +  I+H        L   T
Sbjct: 428  TKTGIPLEQGVEIGRVFDSLKVVRIIPEWGVICRTDDGLDGFVHISHLSDERLPALNSGT 487

Query: 789  VE--SGSVIQAAILDVAKAERLVDLSLKTVFIDR-FREANSNRQAQKKKRKREASKDLGV 845
             E  +G+V +  ++  +  + ++  S +   I++ F + N                +L V
Sbjct: 488  AEFRAGTVHRGRVIGHSPLDGVLLFSFERKIINQVFMQVN----------------ELQV 531

Query: 846  HQTVNAIVEIVKENYLVLSLPEYNHSIG-------YASVSDYNTQKFPQKQFLNGQSVIA 898
             Q +   ++ + +  L +++   N S+        YA +      K P+K+F  G +V A
Sbjct: 532  GQVLKGTIQRLTDQMLFVNI---NGSVDGIVRPLHYADI----VLKHPEKRFRPGSTVRA 584

Query: 899  TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV---------GSLVQAEITEI 949
             V +L  +    R++L LK           R    S  D+         G L+ A I++I
Sbjct: 585  RVFSLDPARN--RVVLTLK-----------RTLIDSPLDIPTKFENVRKGQLIPAVISKI 631

Query: 950  KPLELRLKFGIGFHGRIHITEVNDDKSN-VVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1008
                L     +   G +       + S  VV N+   F IG+ V  R+I  +  P+ ++ 
Sbjct: 632  ----LDKGCLVDLFGDMKAFLPQSEASEAVVANIAEIFYIGKPVNVRVIDLT--PESQRI 685

Query: 1009 FLWELSIKPSML-TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1067
            F+   S++ +    VSE+          V +G+ V G   ++     L+T++      L 
Sbjct: 686  FV---SVRQAKFDPVSEV---------PVKVGEIVNGIATEIHPAQILVTLTPSRHPALL 733

Query: 1068 ILDSAYEPSEL--QEFQRRFHIGKAVTG-HVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1124
             L S     ++   E +    +G+ V G  V+S N    LL +       G+    V +S
Sbjct: 734  SLRSLAIQRKMTDDELRSNLKVGEKVDGLRVVSKNPTTGLLIVAYTTRGGGV----VSVS 789

Query: 1125 NDNM---QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            N      ++ I  G I+ GR++       G ++Q+G  + G VH  +      SD  +  
Sbjct: 790  NTTAALEESDIQPGQIISGRVASYTPV--GTIIQLGHSVRGVVHPCD-----ASDDFAEI 842

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
             EG   PL     G+ +K  VL I    +    V+LS R S          D +T+   P
Sbjct: 843  AEGD-GPLR---VGEEIKAYVLAIDPISKA---VQLSTRVS------RAHPDQATESIDP 889

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
               +E++ +L     ++G VK+V + G F+ L R + A+V++  L D +V+  E  F + 
Sbjct: 890  --EVERVGELQSGQSIRGLVKHVAAHGLFVALGRTVTARVMIRELFDDFVKEWESHFHVN 947

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            +LV+G++LSV+    +VE+TL+   +    +     LS+   G  VI  +KRVE YG+F+
Sbjct: 948  QLVSGKILSVDEQRNQVEMTLRQDSTVRHKREAQFGLSDFKEGQKVIAVVKRVERYGMFL 1007

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
             IE + + GLCH SE+S     ++      +R G+KVK  I+ V++E  +I  G+K+SYF
Sbjct: 1008 RIEGSGVSGLCHKSEVSHSSRSDVSEALLGFRPGDKVKAMIVSVNRESGKIDFGIKASYF 1067

Query: 1419 KNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRA 1478
             ND D +  S            GS +  ++         D + ESE+ G +     +   
Sbjct: 1068 -NDDDFMGPSG----------TGSMSAPAMTHGG-----DAESESEEDGLMDEDGDDEDL 1111

Query: 1479 SVPPLE-----------VNLDDEQPD------MDNGISQNQGHTDEAKTIDEKNNRHAKK 1521
             V   E           V  DD +P           +  + G     +      +  +  
Sbjct: 1112 DVHEAEGSEEHIDVDESVEEDDPKPSPTKANVAPTALRVSAGFDWSGRAPSPVPSSSSSS 1171

Query: 1522 KEKEE----REQEIRAAEERLLEKDA---PRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1574
               E+    R +  +A  + L    A   P +  EFER + +SPNSSF+WI+YM+F L +
Sbjct: 1172 ASDEDLPSSRSKFKKAVADDLTSTSADNQPSSSAEFERALFASPNSSFLWIQYMSFQLQL 1231

Query: 1575 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634
             +V+KAR I   AL+ I  REE EKLN+W+A  NLE  +G   EE+  KVF++A+QY D 
Sbjct: 1232 HEVDKARRIGREALEKITYREEGEKLNVWMALINLELGFGT--EESTEKVFKKAVQYNDA 1289

Query: 1635 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQR 1693
            + V++            ++ +E+  K +KKF    + W +     L K      +A++ R
Sbjct: 1290 RTVYIRYAEALTAAADMQMTEEIHKKTVKKFGAFPESWTKFASYYLAKGDTASARALLPR 1349

Query: 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1753
            A+ SL   KH++ I + A+LEFK+G A+RG+++FEG+L  YPK+ DLWS+Y+DQ  ++ D
Sbjct: 1350 AMKSLESSKHLEMIEKMAVLEFKHGDAERGKTLFEGLLERYPKKLDLWSVYIDQLAKVND 1409

Query: 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            +  +R  F+RA+   L   K KFLFKK+L  E  +G+ +  E  K++A E+V
Sbjct: 1410 IQAVRTAFDRALDRKLNSTKAKFLFKKWLNIEMRIGDVKGQEKAKERAREWV 1461



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 145/642 (22%), Positives = 284/642 (44%), Gaps = 47/642 (7%)

Query: 108 GMVLTAYVKSIEDHGYILHFGLPS----FTGFLPRNNLAENSGIDVKPGLLLQGVVRSID 163
           G  +T  V S ED G+ + F   S      G+L +   AE +   +  G LL   + +  
Sbjct: 257 GYAVTGEVISEEDKGWRVKFVAESSDNVVEGWLSKAE-AEKNNFHIVVGQLLPCTISASS 315

Query: 164 RTRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 222
              +VV LS D  T+   V  + K +S +  L+PG +V   + +++ +G+ +    ++ G
Sbjct: 316 AGGRVVQLSLDHQTL---VRSEQKAVSEVGSLLPGHLVIALITAVVPSGLNVKISGFYDG 372

Query: 223 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV----DPTSRAVGLTLNPYLLHNRAPPS 278
           T+++ HL      ++  + Y   KKV AR+++     DP  R   L+  P+++   +P +
Sbjct: 373 TIEVAHL--PLGDSDIDDKYKVGKKVQARVIYEANSHDP--RHFSLSALPHIITFSSPTT 428

Query: 279 H--------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
                    V++G ++D  KVVR+    G+   I  T      +V IS +++E +  L  
Sbjct: 429 KTGIPLEQGVEIGRVFDSLKVVRIIPEWGV---ICRTDDGLDGFVHISHLSDERLPALNS 485

Query: 331 ---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 387
              +++ G+  R R++G   L+G+     +      +    ++++ G V+KG +  +   
Sbjct: 486 GTAEFRAGTVHRGRVIGHSPLDGVLLFSFERKIINQVFMQVNELQVGQVLKGTIQRLTDQ 545

Query: 388 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLV 445
              V   G V  +    H ++  +  P K+F+ G+ +  RV  +     R+ +T K+TL+
Sbjct: 546 MLFVNINGSVDGIVRPLHYADIVLKHPEKRFRPGSTVRARVFSLDPARNRVVLTLKRTLI 605

Query: 446 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 505
            S L I + +       +    I+KI   GC V  +  ++ F P+SE         + ++
Sbjct: 606 DSPLDIPTKFENVRKGQLIPAVISKILDKGCLVDLFGDMKAFLPQSEASEAVVANIAEIF 665

Query: 506 HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI 565
           ++G+ V  R++   P S+RI +S          +  VK+G +V+G+   + P  ++V + 
Sbjct: 666 YIGKPVNVRVIDLTPESQRIFVSVRQAKFDPVSEVPVKVGEIVNGIATEIHPAQILVTLT 725

Query: 566 AKGYSKGTIPTEHLADHLEHA-TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKY------ 618
              +    +    LA   +     ++S +K G + D L V+    +  LL   Y      
Sbjct: 726 PSRHP-ALLSLRSLAIQRKMTDDELRSNLKVGEKVDGLRVVSKNPTTGLLIVAYTTRGGG 784

Query: 619 --SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD--GQR 674
             S+ N+   L  + S I P  ++ G V +    G  ++    + G      A D   + 
Sbjct: 785 VVSVSNTTAAL--EESDIQPGQIISGRVASYTPVGTIIQLGHSVRGVVHPCDASDDFAEI 842

Query: 675 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
           A+      VG+ +++ +L ++  +  + LS + S      A+
Sbjct: 843 AEGDGPLRVGEEIKAYVLAIDPISKAVQLSTRVSRAHPDQAT 884


>gi|301614745|ref|XP_002936843.1| PREDICTED: protein RRP5 homolog [Xenopus (Silurana) tropicalis]
          Length = 1818

 Score =  335 bits (859), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 345/1401 (24%), Positives = 638/1401 (45%), Gaps = 168/1401 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLL 58
            +N+S GM   G V +  + +L + LP  L G  +A    +A   ++  +++ ++  + L 
Sbjct: 76   KNLSVGMMFLGCVKQAKDFELAVSLPYCLTGYIQATNICEAYTKLIGEQVKKDDPMEALT 135

Query: 59   P--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
            P   ++  G LV C +  L+      G   + LS+    + K L+  +++ GM+++  V 
Sbjct: 136  PLSELYSPGMLVRCAISSLETTTS--GCNSVKLSINPKHVNKALTTGSLKAGMLVSGCVS 193

Query: 117  SIEDHGYILHFGLPSFTGFLPRNNLA-----ENSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            S+EDHGY++  G+     FLPR            G  ++ G  L  V++ +    ++V L
Sbjct: 194  SVEDHGYLVDIGVTGSKAFLPRQKAQLFLNQAGKGPLLRIGQYLNCVIQEVKNEGRIVRL 253

Query: 172  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
            S   + V+  +    +  +++ L+PG+++  +++ + ++ + LSFL+ +TG VD  H + 
Sbjct: 254  SITQNDVTGALATMEQNWTLNNLLPGLVLKAQIEKVTQSSITLSFLSSYTGFVDFLHFE- 312

Query: 232  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQ 288
                      Y + ++V A IL++DP+++++ LTL         P   +    VG + + 
Sbjct: 313  ----PKKIGSYKEGQEVKACILWLDPSTKSIRLTLRQCFQQPGNPLPQLTSDWVGSVLEN 368

Query: 289  SKVVRVDRGLGLL--LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 346
              V  + R  G +  LD  +   +    ++ S   + E+      +K+G+  + RI  F 
Sbjct: 369  CMVQTLVRNAGAIFELDGGNLGFAFKHNLSASKHPDNEI------FKKGTAHKGRIKEFS 422

Query: 347  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 406
             +E +    L+      L   H D++ G V++G + ++++ G +V+    +  L P  H 
Sbjct: 423  PMEEMHFLSLREKMITDLFLRHEDIQAGQVLEGTIQSLEAVGLVVKITDHLTGLVPKLHF 482

Query: 407  SEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            ++  +  P KK+ +G ++  +VL V    +++ +T KKTL+KSKL I++S+ +A   LIT
Sbjct: 483  ADVLLKHPEKKYIIGNKIKCKVLTVITSERKLILTRKKTLMKSKLPIIASFDDAQPGLIT 542

Query: 465  HGWITKIEKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASR 523
            HG+I  I+ +GC V+F+N VQG APR ELG L         ++ GQV+K R++   P ++
Sbjct: 543  HGFIVAIKDYGCIVKFFNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVRVLDCNPQTQ 602

Query: 524  RINLSF-------------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 570
            ++ LSF              +K T+  + D   +G +V   V   T   V V ++ +  S
Sbjct: 603  KLLLSFRITEEGETEQEQRYLKKTKAVKLD---VGKVVDTRVVSKTDKGVNVLILPE-ES 658

Query: 571  KGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LP 628
               IP  HL+DH+ +  ++   ++ G     ++ L     + +L+ K  LI+S ++    
Sbjct: 659  PAFIPKMHLSDHISNCELLWHALEEGDNIPGVMCLSTFKGHHILTKKAVLISSFEKGSCV 718

Query: 629  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 688
               S +     + G+V +I+  G FV F   L G  P+S+  D    ++S   + GQ+V 
Sbjct: 719  KVISEVQTGMHLTGFVKSIMPYGAFVEFPYGLFGLVPKSEISDKFVTNISDHLFEGQTVL 778

Query: 689  SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ------SSKHNGSE-- 740
            + ++  + E  R  L+LK S C+ +D S  +   LL +  + LQ      S K +  +  
Sbjct: 779  AKVIKTDEEKQRFLLTLKMSECAPSDCS-AEGLLLLSQCFSELQLLKGLLSRKGDPEDEL 837

Query: 741  --LKWVEGFIIGSVIE-----GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGS 793
                   G  +  V+E     G VH S   G +   +  S      TH+ +   T  +G 
Sbjct: 838  SIYTLTSGQKLTLVVENAEENGPVHFST--GSITGAQTVS-----ATHNNIGDETPIAGQ 890

Query: 794  VIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 853
             ++A +L V   +  V +SL    +               K+K+   K    H   +A V
Sbjct: 891  KVKAVVLHVDLLKLHVYVSLNEALL---------------KKKKNVPKMNSSH---SADV 932

Query: 854  EIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRL 912
              V E + V+SL    H       S  N T  F  ++   G+++  TV+   +S     L
Sbjct: 933  LHVAEEFAVVSLTGPAHLAAVPMSSHLNDTFHFESEKLKVGETI--TVILKATSVNEQGL 990

Query: 913  LLLLKAISETETSSSKRAKKKS----------SYDVGSLVQAEITEIKPLELRLKFGIGF 962
            LL ++  S  +TS ++   K+S             VG LV   +  IKP ++ +      
Sbjct: 991  LLAVQNKSALKTSKNQGQTKQSDVKTSGFMAHGLKVGDLVSGTVKSIKPTQVIVSINDNV 1050

Query: 963  HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK------PDMKKSFLWE 1012
             G IH++++ +D + +     S     Q VT R+I     KS++      PD   S L E
Sbjct: 1051 CGFIHVSQITED-TPLGSFPTSKLSPKQEVTGRVIGGREVKSHRYLPITHPDFIHS-LPE 1108

Query: 1013 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
            LSI P ++       K    +   + G++VT Y+  Y  + ++  + I+  ++ ++ +L 
Sbjct: 1109 LSILPGLINKDNKVPKPRPLKT-FTPGEKVTCYINKYNTEKKYLEVEITPQIRGRIELLL 1167

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1130
             +  P  L+  ++ F  G++++  V+  +   K L L L     GI              
Sbjct: 1168 LSQTPKNLKRPEKLFKNGQSLSATVVGPDATHKHLCLSL----TGIYS------------ 1211

Query: 1131 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
             + EG +    ++K++ G  GL + +     G      L +         Y E   D   
Sbjct: 1212 -LEEGSVTMASVTKVVKG-SGLTLSLPFGKTGEASIFHLHD--------NYTEASLDK-- 1259

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
             +  G+ V+C +L +S+T++ +      ++S ++  +S ++ D         K +   + 
Sbjct: 1260 -FTPGKIVRCAILSVSKTIKVSL-----MQSKINQQASKSTDD---------KEITSFDS 1304

Query: 1251 LSPNMIVQGYVKNVT-SKGCFIMLSRKLDAKVLLSNLSDGYV---ESPEKEFPIGKLVAG 1306
            L    +V G+V  VT +KG F  LS  +   +   N++  +V    +  K  P G L+  
Sbjct: 1305 LEEGQLVTGFVSAVTQNKGVFFRLSSSIVGHIQFRNITSYFVYDTSAYSKYIPEGTLLTA 1364

Query: 1307 RVLSVEPLSKRVEVTLKTSDS 1327
            +VLSV+P  K VE++L  SD+
Sbjct: 1365 KVLSVDPEQKHVELSLLPSDT 1385



 Score =  285 bits (729), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 141/288 (48%), Positives = 202/288 (70%), Gaps = 4/288 (1%)

Query: 1522 KEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1580
            +EK+E E+E+   E  L +    P++ D+F+RLV SSP+SS +W++YMAF L   ++EKA
Sbjct: 1526 REKKEAEKELSKKEAALQDSGRQPQSADDFDRLVISSPDSSILWLQYMAFHLHATEIEKA 1585

Query: 1581 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1640
            R +AERAL+TI+ REE EKLN+WVA  NLEN YG   EE++VK F+RA+QY +P KV+  
Sbjct: 1586 RVVAERALKTISFREEQEKLNVWVALLNLENMYGT--EESLVKAFERAVQYNEPLKVYQQ 1643

Query: 1641 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLP 1699
            L  +Y ++E+ K A++L   M+K+F+    VW++    LLKQ Q +G   ++QRAL SLP
Sbjct: 1644 LADIYVKSEKFKQAEDLYNTMLKRFRQEKSVWIKFATFLLKQGQGDGTHRLLQRALKSLP 1703

Query: 1700 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1759
               H+  IS+ A LEF+ G ++R +++FE  LS YPKRTDLWS+Y+D  ++ G    +R 
Sbjct: 1704 EKDHVDVISKFAQLEFQLGDSERAKALFESTLSSYPKRTDLWSVYIDMMVKHGSQREVRD 1763

Query: 1760 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            +FER I LSL  K++KF FK+YLEYEK  G  E ++ VK+KA++YVES
Sbjct: 1764 IFERVIHLSLAAKRIKFFFKRYLEYEKKHGSAESVQAVKEKALQYVES 1811



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            +S +  G  + G +K +  YG F+      L GL   SE+S+  V NI      G+ V  
Sbjct: 721  ISEVQTGMHLTGFVKSIMPYGAFVEFP-YGLFGLVPKSEISDKFVTNISDHLFEGQTVLA 779

Query: 1398 KILKVDKEKRRISLGMKSS 1416
            K++K D+EK+R  L +K S
Sbjct: 780  KVIKTDEEKQRFLLTLKMS 798



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 102/240 (42%), Gaps = 31/240 (12%)

Query: 884  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 943
            K P+K F NGQS+ ATV+     +T   L L L  I               S + GS+  
Sbjct: 1176 KRPEKLFKNGQSLSATVVG--PDATHKHLCLSLTGIY--------------SLEEGSVTM 1219

Query: 944  AEITEI-KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI--IAKS 1000
            A +T++ K   L L    G  G   I  ++D   N  E     F  G+ V   I  ++K+
Sbjct: 1220 ASVTKVVKGSGLTLSLPFGKTGEASIFHLHD---NYTEASLDKFTPGKIVRCAILSVSKT 1276

Query: 1001 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV-DNEWALLTIS 1059
             K  + +S + + + K +     EI S    EE     GQ VTG+V  V  N+     +S
Sbjct: 1277 IKVSLMQSKINQQASKST--DDKEITSFDSLEE-----GQLVTGFVSAVTQNKGVFFRLS 1329

Query: 1060 RHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1118
              +   + F   ++Y   +   + +    G  +T  VLS++ E+K + L L P   G  D
Sbjct: 1330 SSIVGHIQFRNITSYFVYDTSAYSKYIPEGTLLTAKVLSVDPEQKHVELSLLPSDTGKPD 1389


>gi|149040333|gb|EDL94371.1| programmed cell death protein 11 (predicted) [Rattus norvegicus]
          Length = 964

 Score =  335 bits (859), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 274/930 (29%), Positives = 442/930 (47%), Gaps = 88/930 (9%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
           +++  GM++ G V EVNE +LV+ LP GL+G  +  +  D      NE  A E+ L    
Sbjct: 78  ESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLEDLL 137

Query: 58  -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
            LP +F  G LV C+V  LD    E GK+ + LS+    + K LS E ++ GM+LT  V 
Sbjct: 138 RLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSAEALRPGMLLTGTVS 195

Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
           S+EDHGY++  G+     FL      E     N G   K G  L  VV  +     VV L
Sbjct: 196 SLEDHGYLVDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGVVSL 255

Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
           S +   VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+FTG VD  HL+ 
Sbjct: 256 SVEHSQVSSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFLTFFTGLVDFMHLE- 314

Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
                     Y+  + V A IL V P +R V L+L P  LH   P + +   ++G + D 
Sbjct: 315 ----PKKMGSYSSKQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTVLDD 370

Query: 289 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
           + V       G +  +    +   AY  +S +++ +     + +K GS  R RI+ +  +
Sbjct: 371 ASVEGFFEKAGAIFRLRDGVL---AYARLSHLSDSKKAFSAEAFKLGSTHRCRIIDYSQM 427

Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
           + LA   L+ S        + D+K G +VKGKV+A+  FG +V+    ++ L P  H+++
Sbjct: 428 DELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLAD 487

Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
             +  P KKF  G E+  RVL    ++K++ +T KKTLV SKL  ++ Y +A   L THG
Sbjct: 488 IMMKNPEKKFNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPAITCYEDAKPGLQTHG 547

Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            I +++ +GC V+FYN VQG  P+ EL      +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548 VIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERML 607

Query: 527 LSFMMKPTRVSEDDLVK----------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
           LSF +      +D+ VK           G LV   V   T N + V ++        +PT
Sbjct: 608 LSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHNIP-AFLPT 666

Query: 577 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            HL+DH+ +                           LL      +   Q  P   S I P
Sbjct: 667 PHLSDHVANGP-------------------------LLHHWLQTVEGGQD-PKSLSEIQP 700

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             ++ G+V +I + G FV+F   L+G +P++   D      S+ +  GQ+V + + +V+ 
Sbjct: 701 GMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDE 760

Query: 697 ETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSV 752
              R+ LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G V
Sbjct: 761 SKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGMV 820

Query: 753 IEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 811
           ++  V E  + G VV       D+    + +  AG  +E G   +  +L V   +  V +
Sbjct: 821 LDAMVQEVLENGSVVFGGGPVPDLILRASRYHRAGQELEPGQKKKVVVLHVDALKLEVHV 880

Query: 812 SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
           SL    ++R           K ++ R+ S+    HQ    IV+ ++E++ V SL E  H 
Sbjct: 881 SLHQDLVNR-----------KARKLRKNSR----HQ---GIVQHLEESFAVASLVETGHL 922

Query: 872 IGYASVSDYN-TQKFPQKQFLNGQSVIATV 900
           + ++ +S  N T  F  ++   GQ V  T+
Sbjct: 923 VAFSLISHLNDTFHFDSEKLRVGQGVCLTL 952



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 2/168 (1%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            + +D+    IV+G V  +   G  + +  ++   V   +L+D  +++PEK+F  G  V  
Sbjct: 446  RYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKC 505

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            RVL  +P +K++ +TLK +   T+    I    +   G    G I RV+ YG  +   N 
Sbjct: 506  RVLLCDPEAKKLIMTLKKT-LVTSKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYN- 563

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            ++ GL    ELS  H+ + E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 564  DVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK 611



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 102/257 (39%), Gaps = 35/257 (13%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            I  G IV G++  +     G++V++G  + G V    L +I + +P   ++ G       
Sbjct: 450  IKTGTIVKGKVLALKPF--GMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTG------- 500

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
             DE   VKC+VL      +      ++L+ +L              V +    +   ED 
Sbjct: 501  -DE---VKCRVLLCDPEAKKLI---MTLKKTL--------------VTSKLPAITCYEDA 539

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
             P +   G +  V   GC +     +   V    LS  ++  PE+ F  G++V   VL+ 
Sbjct: 540  KPGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNC 599

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNL----SNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            EP  +R+ ++ K           + N     S ++ G +V  ++      GL + I   N
Sbjct: 600  EPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHN 659

Query: 1368 LVGLCHVSELSEDHVDN 1384
            +        LS DHV N
Sbjct: 660  IPAFLPTPHLS-DHVAN 675



 Score = 44.7 bits (104), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 47/85 (55%)

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            G+  + + ++ P M++ G+VK++   G F+     L      + +SD +V +P + F  G
Sbjct: 689  GQDPKSLSEIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEG 748

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSD 1326
            + V  +V +V+   +R+ ++L+ SD
Sbjct: 749  QTVVAKVTNVDESKQRMLLSLRLSD 773


>gi|452846030|gb|EME47963.1| hypothetical protein DOTSEDRAFT_147032, partial [Dothistroma
            septosporum NZE10]
          Length = 1780

 Score =  332 bits (851), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 275/920 (29%), Positives = 458/920 (49%), Gaps = 118/920 (12%)

Query: 938  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTAR 995
            +G +V+A I  IK  ++ ++      GR+ ++E  D  D+ N        FK    +  +
Sbjct: 911  LGRVVKARIASIKATQMNVRLADNVQGRVDVSEAFDSWDEINNKAAPLQKFKHNDLIDVK 970

Query: 996  IIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
            ++   +  + +         K  ++ELS K S +   E G + L     V  G     +V
Sbjct: 971  VLGIHDARNHRFLPISHRQGKVPVFELSAKKSRV---EAGDEALLGLDSVQPGSTYLAFV 1027

Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
                +    + +S +++ ++ ++D + +  +LQ  + RF IG A+   V S++     L 
Sbjct: 1028 NNHGDNCVWVNLSPNVRGRVALMDLSDDVGQLQNVENRFRIGCALRVKVKSVDVSANRLD 1087

Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1166
            L  R  +       V   ND     +  G ++  R++K    +  + VQI   + G V  
Sbjct: 1088 LTARHNESS----EVKTLND-----LKAGMVIPARVTKTTERL--VNVQITDTISGVVPL 1136

Query: 1167 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1226
             EL +          D  Q +P + Y++   V+  VL +    +  F   LSLR S    
Sbjct: 1137 AELSD----------DFEQANP-AQYNKNDIVRACVLAVDVPNKKIF---LSLRPS---- 1178

Query: 1227 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1286
                   LS+ + T    +     L    IV+G++K+VT KG F+ L   +DA V +S+L
Sbjct: 1179 -----KVLSSSLPTTDAQVSDTGSLKVGNIVRGFIKHVTDKGVFVSLGATVDALVRISDL 1233

Query: 1287 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1346
            SD +V+  +    I +LV GR++SV+  +K+V+++LK S     + +   N+ ++  GD 
Sbjct: 1234 SDRFVKDWKSLHEIDQLVKGRIMSVDHATKQVQMSLKQSHV-DGNYTPPLNIGDIKAGDT 1292

Query: 1347 VIGQIKRVESYGLFITIENTN--LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1404
            V G++++VE +G F+ IENT   L GLCH SE++   V+++  +Y  G+ VK K+L VD 
Sbjct: 1293 VTGRVRKVEDFGAFVDIENTQPRLSGLCHRSEVAARRVEDVRKLYSTGDVVKAKVLSVDV 1352

Query: 1405 EKRRISLGMKSSYFKNDAD--------------NLQMSSEEESDEAIEEVGSYNRSSLLE 1450
            E R+ISLG+K+SYF +D +               L  S   E  E  +  G  +    L+
Sbjct: 1353 ENRKISLGLKASYFDDDDEEKDEEESEDEDVETGLVESGGVEVMEGNDAEGGID----LD 1408

Query: 1451 NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD-------NGISQNQG 1503
            N+    QDMD + ED    V+  ++            DDE+P ++       NG   N  
Sbjct: 1409 NNQ---QDMDSDEED----VVDGMD------------DDEEPALEFTSGLKTNGFDWNGS 1449

Query: 1504 HTD---EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNS 1560
              D    A   + + +  A+KK K  +  EI+      L+K  PR+  +FER +   P++
Sbjct: 1450 ALDGNINAAGYESEPDAIARKKRKRNK-PEIKEDLTGDLDKYGPRSVSDFERQLLGQPSN 1508

Query: 1561 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1620
            S +WI+YMAF + ++++++AR IAERA++TI+IRE  EKLN+WVA+ NLE EYG+  +E 
Sbjct: 1509 SLLWIQYMAFQIQLSELDEARRIAERAIRTIHIRETEEKLNVWVAWLNLEVEYGD--DEH 1566

Query: 1621 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI--KKFKHSCKVWLRRVQR 1678
            V +VF+ A Q  D  ++H  L  +Y  + + + AD +  +MI  K F+    VWL     
Sbjct: 1567 VDEVFKEACQVQDSLEMHEKLASIYISSGKLEKADSIYERMIGNKNFRAVPDVWLNYATF 1626

Query: 1679 LL--KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEF--KNGVADRGRSMFEGILSEY 1734
            L+  K      +A++ +A+ S+   KH    +  A LEF  K+G A+RGR++FE IL+E+
Sbjct: 1627 LMSDKNAPGRARALLPKAMQSIRIQKHRDLSADFAALEFKTKHGNAERGRTIFENILAEW 1686

Query: 1735 PKRTDLWSIYLD----------QEIRLGD-VDLIRGLFERAISLSLPPKKMKFLFKKYLE 1783
            PK +  W  ++D           E    D +D  R LFER  +L +  ++ KF+FKK+ E
Sbjct: 1687 PKWSAGWDRFIDLERSRVSKAKDEAEKSDAIDKTRALFERVAALKMKKRRAKFVFKKWFE 1746

Query: 1784 YEKSVGEEERIEYVKQKAME 1803
            +E+  G ++ +  VK  A E
Sbjct: 1747 FEEKEGTDKDMGRVKLLAKE 1766



 Score =  153 bits (386), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 174/755 (23%), Positives = 317/755 (41%), Gaps = 58/755 (7%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDNEIEANEDN 56
           +N+  G  + G V  +  +D+ + LP  L G A       R    ++ +L ++ +  ++ 
Sbjct: 139 KNLVVGSSVLGRVTAITGRDIALALPNNLTGFAPILSISERLTSRIERLLASDEKPEDEE 198

Query: 57  L----LPTIFHVGQLVSCIVLQLDDDKKEIGKRK--IWLSLRLSLLYKGLSLETVQEGMV 110
                L  +F+VGQ +   +     + K+  K K  I LSL  + +   L  E V     
Sbjct: 199 DEDVDLKQLFYVGQWLRASITATGTEPKDGSKSKKHIELSLDPAAVNGALREENVVTNST 258

Query: 111 LTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRK 167
           + A V+S+EDHG ++  GL   S  GF  +  L     +D ++ G +L  +V     + K
Sbjct: 259 IQAAVRSVEDHGIVMDIGLSESSVKGFASKKALGSAYSLDQIQEGQVLLCLVTGKASSGK 318

Query: 168 VVYLSSDPDTVSKCVTKDLK----------GISIDLLVPGMMVSTRVQSILENGVMLSFL 217
           VV L+ DP   S   T++ K            ++D  +PG  V   +      G+    +
Sbjct: 319 VVNLTPDPSKFS-VATREGKDKDKMPFVAEAPTVDAFLPGTAVDVLITETGPKGIAGKIM 377

Query: 218 TYFTGTVDIFH-LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP 276
                T D+ H   + FP  N K  Y    K  ARI+F  P       T +     ++  
Sbjct: 378 GMLDVTSDVVHSAASQFPDMNQK--YRVGSKAKARIIFSIPQDDGARKTKSEATELSQP- 434

Query: 277 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--YKE 334
              + +    + +KV  +    G+ L++        A+  IS +++ +V  +     YK 
Sbjct: 435 ---LALSSTLEDAKVTSIVADRGIFLELTD---GKKAFAHISQLSDSKVDSISTAGPYKP 488

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV------DSFG 388
            S  +VRI  +  ++ +    LK S  +       D+  G VV G V  +         G
Sbjct: 489 ESTHKVRITAYNPVDNIYYVSLKKSVLDQPFLRLEDLPIGGVVTGTVDKLILGGKSGVTG 548

Query: 389 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVK 446
            +V+    +  L P  H+S+  +  P +KF+ G  +  R+L V +++  + VT KK+LV 
Sbjct: 549 VLVKLSDSITGLVPEMHLSDAHLTHPERKFREGYPIKGRILSVDTEKRHVRVTLKKSLVD 608

Query: 447 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 506
               + + Y +    + + G I  +  +G  V+FY  V+ + P +E+      +P   + 
Sbjct: 609 DSATVWNDYKDLQPGMESKGTIVSLLPNGAAVQFYGPVRAWLPVAEMSETFIEKPEKHFR 668

Query: 507 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLGSLVSGVVDVVTPNAVVV 562
           +GQ V  ++++  P S+ + ++     T   E     + +  G LVS  V     +++  
Sbjct: 669 LGQTVTVKVLNVKPESQEMKVTCKDSSTFDDEQQSAWNALSGGQLVSATVSEKLADSITA 728

Query: 563 YVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYS 619
            +      +GTI   H+ D     A      I+ G +   LLVL  +  S  ++LS K S
Sbjct: 729 EL--DNGIRGTIRIGHVIDGPASKAEKELKRIRVGQKLSNLLVLTKQERSHTVVLSNKPS 786

Query: 620 LINSAQQLPSDASHI--HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
           +I  ++      S +       VHG+V NI   G +  F   + G  P+++      A  
Sbjct: 787 MIEDSKACALIKSFVDAREGQKVHGFVRNITPEGVYAEFANGIVGLIPKNQVPADSLAQP 846

Query: 678 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           S      Q+V + ++  +    R  LS+++   ++
Sbjct: 847 SFGLRKDQTVTAYVIGTDGIHERFILSMREQAATN 881



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 142/327 (43%), Gaps = 32/327 (9%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKPGL 153
            L L++VQ G    A+V +  D+   ++   P+  G +   +L+++ G         + G 
Sbjct: 1012 LGLDSVQPGSTYLAFVNNHGDNCVWVNLS-PNVRGRVALMDLSDDVGQLQNVENRFRIGC 1070

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVT-KDLKGISIDLLVPGMMVSTRVQSILENGV 212
             L+  V+S+D +   + L++  +  S+  T  DLK         GM++  RV    E  V
Sbjct: 1071 ALRVKVKSVDVSANRLDLTARHNESSEVKTLNDLKA--------GMVIPARVTKTTERLV 1122

Query: 213  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY-LL 271
             +      +G V +  L + F   N    YN++  V A +L VD  ++ + L+L P  +L
Sbjct: 1123 NVQITDTISGVVPLAELSDDFEQAN-PAQYNKNDIVRACVLAVDVPNKKIFLSLRPSKVL 1181

Query: 272  HNRAPPSHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEE 324
             +  P +  +V D     KV  + RG        G+ + + +T     A V ISD+++  
Sbjct: 1182 SSSLPTTDAQVSDT-GSLKVGNIVRGFIKHVTDKGVFVSLGAT---VDALVRISDLSDRF 1237

Query: 325  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV---FTHSDVKPGMVVKGKV 381
            V+  +  ++    V+ RI+   H        LK S  +G         D+K G  V G+V
Sbjct: 1238 VKDWKSLHEIDQLVKGRIMSVDHATKQVQMSLKQSHVDGNYTPPLNIGDIKAGDTVTGRV 1297

Query: 382  IAVDSFGAIVQFPGGVKALCPLPHMSE 408
              V+ FGA V        L  L H SE
Sbjct: 1298 RKVEDFGAFVDIENTQPRLSGLCHRSE 1324



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 62/322 (19%)

Query: 1135 GDIVGGRISKIL----SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
            G +V G + K++    SGV G++V++   + G V    L +  ++ P   + EG   P+ 
Sbjct: 528  GGVVTGTVDKLILGGKSGVTGVLVKLSDSITGLVPEMHLSDAHLTHPERKFREGY--PIK 585

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
            G         ++L +    R   HV ++L+ SL   S+T  +D               +D
Sbjct: 586  G---------RILSVDTEKR---HVRVTLKKSLVDDSATVWNDY--------------KD 619

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L P M  +G + ++   G  +     + A + ++ +S+ ++E PEK F +G+ V  +VL+
Sbjct: 620  LQPGMESKGTIVSLLPNGAAVQFYGPVRAWLPVAEMSETFIEKPEKHFRLGQTVTVKVLN 679

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
            V+P S+ ++VT K  DS T    + +  + L  G +V   +   E     IT E  N   
Sbjct: 680  VKPESQEMKVTCK--DSSTFDDEQQSAWNALSGGQLVSATVS--EKLADSITAELDN--- 732

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1430
                          I    R G  +     K +KE +RI +G K S        L ++ +
Sbjct: 733  -------------GIRGTIRIGHVIDGPASKAEKELKRIRVGQKLSNL------LVLTKQ 773

Query: 1431 EESDEAIEEVGSYNRSSLLENS 1452
            E S   +      N+ S++E+S
Sbjct: 774  ERSHTVV----LSNKPSMIEDS 791



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 138/321 (42%), Gaps = 50/321 (15%)

Query: 417  KFKVGAELVFRV--LGVKSKRITVTHK-------KTL--VKSKLAILSSYAEATDRLITH 465
            +F++G  L  +V  + V + R+ +T +       KTL  +K+ + I +   + T+RL+  
Sbjct: 1065 RFRIGCALRVKVKSVDVSANRLDLTARHNESSEVKTLNDLKAGMVIPARVTKTTERLVN- 1123

Query: 466  GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RI 515
                        V+  + + G  P +EL  D      + Y+   +V+           +I
Sbjct: 1124 ------------VQITDTISGVVPLAELSDDFEQANPAQYNKNDIVRACVLAVDVPNKKI 1171

Query: 516  MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
              S+  S+ ++ S      +VS+   +K+G++V G +  VT   V V + A       + 
Sbjct: 1172 FLSLRPSKVLSSSLPTTDAQVSDTGSLKVGNIVRGFIKHVTDKGVFVSLGA--TVDALVR 1229

Query: 576  TEHLADHLEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQQLPSD 630
               L+D        KS+    +E DQL     + +D+ +  + +S K S ++     P +
Sbjct: 1230 ISDLSDRF--VKDWKSL----HEIDQLVKGRIMSVDHATKQVQMSLKQSHVDGNYTPPLN 1283

Query: 631  ASHIHPNSVVHGYVCNIIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSV 687
               I     V G V  + + G FV       RL+G   RS+    +  D+ K Y  G  V
Sbjct: 1284 IGDIKAGDTVTGRVRKVEDFGAFVDIENTQPRLSGLCHRSEVAARRVEDVRKLYSTGDVV 1343

Query: 688  RSNILDVNSETGRITLSLKQS 708
            ++ +L V+ E  +I+L LK S
Sbjct: 1344 KAKVLSVDVENRKISLGLKAS 1364



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 107/500 (21%), Positives = 198/500 (39%), Gaps = 82/500 (16%)

Query: 365  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM--SEFEI---VKPGKKFK 419
            +   +++  G VVK ++ ++ +    V+    V+    +     S  EI     P +KFK
Sbjct: 903  ISASAEITLGRVVKARIASIKATQMNVRLADNVQGRVDVSEAFDSWDEINNKAAPLQKFK 962

Query: 420  VGAELVFRVLGVKSKR----ITVTHKKTLVKS-KLAILSSYAEATDRLI--------THG 466
                +  +VLG+   R    + ++H++  V   +L+   S  EA D  +           
Sbjct: 963  HNDLIDVKVLGIHDARNHRFLPISHRQGKVPVFELSAKKSRVEAGDEALLGLDSVQPGST 1022

Query: 467  WITKIEKHG--C-FVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIMSSIPA 521
            ++  +  HG  C +V     V+G     +L  D G      + + +G  ++ ++ S   +
Sbjct: 1023 YLAFVNNHGDNCVWVNLSPNVRGRVALMDLSDDVGQLQNVENRFRIGCALRVKVKSVDVS 1082

Query: 522  SRRINLSFMMKPTRVSEDDLVK-LGSLVSGVV---DVVTPNAVVVYVIAKGYSKGTIPTE 577
            + R++L+      R +E   VK L  L +G+V    V      +V V       G +P  
Sbjct: 1083 ANRLDLT-----ARHNESSEVKTLNDLKAGMVIPARVTKTTERLVNVQITDTISGVVPLA 1137

Query: 578  HLADHLEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQQLP---- 628
             L+D  E A   +      Y  + +     L +D  +  + LS + S + S+  LP    
Sbjct: 1138 ELSDDFEQANPAQ------YNKNDIVRACVLAVDVPNKKIFLSLRPSKVLSSS-LPTTDA 1190

Query: 629  --SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 686
              SD   +   ++V G++ ++ + G FV     +      S   D    D    + + Q 
Sbjct: 1191 QVSDTGSLKVGNIVRGFIKHVTDKGVFVSLGATVDALVRISDLSDRFVKDWKSLHEIDQL 1250

Query: 687  VRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 746
            V+  I+ V+  T ++ +SLKQS     D ++               +   N  ++K    
Sbjct: 1251 VKGRIMSVDHATKQVQMSLKQSHV---DGNY---------------TPPLNIGDIK---- 1288

Query: 747  FIIGSVIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVE-------SGSVIQAA 798
               G  + G+V +  DFG  V  E     + G     ++A   VE       +G V++A 
Sbjct: 1289 --AGDTVTGRVRKVEDFGAFVDIENTQPRLSGLCHRSEVAARRVEDVRKLYSTGDVVKAK 1346

Query: 799  ILDVAKAERLVDLSLKTVFI 818
            +L V    R + L LK  + 
Sbjct: 1347 VLSVDVENRKISLGLKASYF 1366



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 116/524 (22%), Positives = 206/524 (39%), Gaps = 94/524 (17%)

Query: 938  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN------------ 985
            VGS V   +T I   ++ L       G   I  +++  ++ +E L ++            
Sbjct: 143  VGSSVLGRVTAITGRDIALALPNNLTGFAPILSISERLTSRIERLLASDEKPEDEEDEDV 202

Query: 986  -----FKIGQTVTARIIAKSNKP-DMKKSFLW-ELSIKPSMLTVSEIGSKLLFEECDVSI 1038
                 F +GQ + A I A   +P D  KS    ELS+ P+ +  +         E +V  
Sbjct: 203  DLKQLFYVGQWLRASITATGTEPKDGSKSKKHIELSLDPAAVNGA-------LREENVVT 255

Query: 1039 GQRVTGYVYKVDNEWALLTI-----SRHLKAQLFILDSAYEPSELQEFQRRFHI--GKAV 1091
               +   V  V++   ++ I     S    A    L SAY   ++QE Q    +  GKA 
Sbjct: 256  NSTIQAAVRSVEDHGIVMDIGLSESSVKGFASKKALGSAYSLDQIQEGQVLLCLVTGKAS 315

Query: 1092 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1151
            +G V+++  +     +  R  +D           D M  F+ E   V   +    + V  
Sbjct: 316  SGKVVNLTPDPSKFSVATREGKD----------KDKM-PFVAEAPTVDAFLPG--TAVDV 362

Query: 1152 LVVQIGPH-LYGRVHFTELKNICVSDPLSGYDEGQFDPLS-GYDEGQFVKCKVLEISRTV 1209
            L+ + GP  + G++    +  + V+  +      QF  ++  Y  G   K +++      
Sbjct: 363  LITETGPKGIAGKI----MGMLDVTSDVVHSAASQFPDMNQKYRVGSKAKARII------ 412

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
               F +        DG   T S   +T++  P      +ED     IV         +G 
Sbjct: 413  ---FSIPQD-----DGARKTKSE--ATELSQPLALSSTLEDAKVTSIV-------ADRGI 455

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVES-----PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
            F+ L+    A   +S LSD  V+S     P K     K+   R+ +  P+     V+LK 
Sbjct: 456  FLELTDGKKAFAHISQLSDSKVDSISTAGPYKPESTHKV---RITAYNPVDNIYYVSLK- 511

Query: 1325 SDSRTASQSEINNLSNLHVGDIVIGQIKRV------ESYGLFITIENTNLVGLCHVSELS 1378
               ++        L +L +G +V G + ++         G+ + + ++ + GL     LS
Sbjct: 512  ---KSVLDQPFLRLEDLPIGGVVTGTVDKLILGGKSGVTGVLVKLSDS-ITGLVPEMHLS 567

Query: 1379 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
            + H+ + E  +R G  +K +IL VD EKR + + +K S   + A
Sbjct: 568  DAHLTHPERKFREGYPIKGRILSVDTEKRHVRVTLKKSLVDDSA 611


>gi|108742058|gb|AAI17595.1| Pdcd11 protein [Danio rerio]
          Length = 1431

 Score =  326 bits (836), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 336/1374 (24%), Positives = 639/1374 (46%), Gaps = 139/1374 (10%)

Query: 1    MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE--D 55
            ++ ++++ G  + G V EV++ ++V+ LP GL G   +    DA   IL+++++ ++  +
Sbjct: 70   LHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAYTNILNDKLDTDDGLE 129

Query: 56   NLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 113
             ++P   +F  G L+ C+V  LD  K+  G   + LS+    + K L+   ++  M L+ 
Sbjct: 130  EVVPLSKLFTPGMLIRCVVSSLDSAKE--GHISLKLSINPKDVNKALNSVALKPAMTLSG 187

Query: 114  YVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 173
             V+S+EDHGY++  G+     FLP+   + +S  D+  G  +  ++  +  + +VV LS 
Sbjct: 188  CVESVEDHGYLVDIGIGGTKAFLPKK--STSSKQDLYVGQYVLVLIEDVKDSGRVVRLSQ 245

Query: 174  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
            +P  + K   +  +G ++D L+PG+++   V+ +  +G++++FL+ FTG VD  HL    
Sbjct: 246  NPQALVKACAETKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLSSFTGVVDFLHLDEDK 305

Query: 234  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV--------KVGDI 285
             +T     Y++ +++ ARIL+V P++R VGL+L  +LL    PP           +VG++
Sbjct: 306  EST-----YSKGQEILARILYVQPSTRQVGLSLRSHLL----PPGGAVLDLHFSERVGEV 356

Query: 286  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV-RILG 344
                ++  +    G L+ +      + A+V   ++ +E   +L+  +       + RI+ 
Sbjct: 357  VQGCQMTSLHHYSGALMKMLD---GSRAFVH-RNLLKEPKEELDTNHLMSQTQHILRIIN 412

Query: 345  FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
            +  +E +    L+ S+ E   F+  D+K G +V+G V  +   G  V+    ++ + P  
Sbjct: 413  YSPIEQIYQATLRWSSIETPFFSCQDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRI 472

Query: 405  HMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL 462
            H+++  +  P KKF  G ++  RVL V++++  + +T KK LV+S L I  SY++A    
Sbjct: 473  HLADVTLKNPEKKFYPGLKVKCRVLSVEAQKKLLILTRKKALVESTLPIFQSYSDARPGR 532

Query: 463  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
            I+HG++  I++ GC VRFY  V+G  P  EL  +    P  ++ VGQVVK +++      
Sbjct: 533  ISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEK 592

Query: 523  RRINLSFM-MKPTRVSEDDLVKLGSLVSGVVDVVTP----NAVVVYVIAKGYSKGTIPTE 577
            + + LSF  +    V E+ + K   +V  +VD        N + V +I +   +  +PT 
Sbjct: 593  KMLRLSFKSVTEEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEVSIIPEEV-QAFLPTT 651

Query: 578  HLADHLEHATVMKSVIKPGYEFDQLLVLDN-ESSNLLLSAKYSLINSAQQ--LPSDASHI 634
            HL+DH+ +   +   ++ G     L+ L N +   ++L+ K  L    +   +P + S +
Sbjct: 652  HLSDHVTNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLKAYIEDGAVPKNFSEL 711

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
                 + G+V NI+  G F+ F   + G AP +   D    + S  + + Q+V + + ++
Sbjct: 712  QVGMQMVGWVKNIMPYGVFISFPYGVFGLAPIANMGDQFIKETSGIFDIDQTVVAKVTNL 771

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFL-LEEK--IAMLQSSKHNGSELKWVEGFIIGS 751
            + E     +SLK S  S ++  F       L+E+  I+ +++ + +   L  +    +G 
Sbjct: 772  DEEKQGFLVSLKLSELSLSENEFHTRLIQGLKERRNISEMRAGRGDSDVLWKLSALTVGD 831

Query: 752  VIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD 810
             ++  V ++ + G V+++ ++ S V    + +   G  +  G  + A IL +   +  V 
Sbjct: 832  QMKMIVGDTTEDGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKLNAVILHIDFVKSQVH 891

Query: 811  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 870
            +SL+                +   +K E  KD        A V+   +++ V+SL   + 
Sbjct: 892  VSLR---------------PKLNIKKEELEKD----ARFTAKVQFADKDFAVVSLATTSD 932

Query: 871  SIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 930
               + +    N+  F  K+F  G  +   V        AG  L     IS   +++    
Sbjct: 933  LTFFPTRPHLNS-IFDSKKFSVGSCLDVKVDDPNCEDLAGFPL-----ISYQSSNAKHEQ 986

Query: 931  KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 990
             K +   +G L++  + ++K L + +    G  GR+H++++  +  ++     S  K+G 
Sbjct: 987  HKPNEERLGELMKVTVKKLKALCVLVNLPSGNTGRVHVSQIL-EFPDIGSCPTSVLKVGM 1045

Query: 991  TVTARIIAKS----------NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1040
             + AR+I             + PD   S + ELS   S L VS++ +KL         G 
Sbjct: 1046 EMEARVIGGRAVRAHNFLAISHPDYNIS-IPELSFLESKLKVSDMVNKLE----KYKPGD 1100

Query: 1041 RVTGYVYKVDNEWALLTISRHLKAQLF----ILDSAYEPSELQEFQRRFHIGKAVTGHVL 1096
             +  +  K   +  LL +  H+K  +     +L    +    +  QR F  G+A++  V+
Sbjct: 1101 DIICFPSKYIKKEQLLEV--HVKPDIMGAVPLLAMCNKLGLSKHPQRLFKPGQALSAKVV 1158

Query: 1097 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1156
            S++ +K        P Q  +S          M T           + KI     GL++ +
Sbjct: 1159 SVDPKK--------PIQFSLSLTGTHKLEPGMNTL--------AMVQKIQPH-KGLMLAL 1201

Query: 1157 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1216
                 G  H T+L +         Y E    PL  Y EGQ ++C V+E     +      
Sbjct: 1202 PYENTGLAHLTDLSD--------SYTE---KPLESYKEGQIIRCHVIE-----QKIKEFN 1245

Query: 1217 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1276
            +SLR S     + +  D+  D +     ++ I D+     ++GYV +V  +G F+ LSR 
Sbjct: 1246 VSLRPS---RLNKDKHDIVEDPE-----IQSIADIKEGQSIRGYVSSVNDQGIFLRLSRT 1297

Query: 1277 LDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            +  +VL  N +  Y+  P+   K      LVA +VLSV+  +  V ++L + D+
Sbjct: 1298 ITGRVLFQNATKYYMNDPKVLIKHVGQNALVAAKVLSVDSENLHVNLSLLSKDT 1351



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 2/167 (1%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            +D+    IV+G V ++   G ++ +   +   +   +L+D  +++PEK+F  G  V  RV
Sbjct: 437  QDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRV 496

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
            LSVE   K + +T K +    ++     + S+   G I  G +  ++ +G  +     ++
Sbjct: 497  LSVEAQKKLLILTRKKALVE-STLPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYE-DV 554

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
             GL  + EL+ + V N E ++  G+ VKVK+LK D+EK+ + L  KS
Sbjct: 555  KGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEKKMLRLSFKS 601



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 111/513 (21%), Positives = 208/513 (40%), Gaps = 78/513 (15%)

Query: 893  GQSVIATVMALPSSSTAGRL----LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 948
            GQ V+  +  +  S    RL      L+KA +ET     K+     +   G L+   +  
Sbjct: 224  GQYVLVLIEDVKDSGRVVRLSQNPQALVKACAET-----KQGWTLDNLLPGLLIHGCVKR 278

Query: 949  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1008
            + P  L + F   F G +    +++DK        S +  GQ + ARI+    +P  ++ 
Sbjct: 279  VTPHGLIVTFLSSFTGVVDFLHLDEDKE-------STYSKGQEILARILYV--QPSTRQ- 328

Query: 1009 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1068
                LS++  +L        L F E    +G+ V G          + ++  +  A + +
Sbjct: 329  --VGLSLRSHLLPPGGAVLDLHFSE---RVGEVVQG--------CQMTSLHHYSGALMKM 375

Query: 1069 LDSA---YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1125
            LD +      + L+E +         T H++S  + + +LR++     + I   T+  S+
Sbjct: 376  LDGSRAFVHRNLLKEPKEELD-----TNHLMS--QTQHILRIINYSPIEQIYQATLRWSS 428

Query: 1126 DNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
                 F    I  G IV G ++ +     G+ V+IG H+ G +    L ++ + +P    
Sbjct: 429  IETPFFSCQDIKVGQIVEGTVTDLQKH--GVYVRIGEHIRGMIPRIHLADVTLKNP---- 482

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
             E +F P      G  VKC+VL +    +      L+ + +L              V++ 
Sbjct: 483  -EKKFYP------GLKVKCRVLSVEAQKKLLI---LTRKKAL--------------VEST 518

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
                +   D  P  I  G+V  +   GC +     +   V +  L+   V +PE+ F +G
Sbjct: 519  LPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVG 578

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            ++V  +VL  +   K + ++ K+       + +I    +  VG +V  ++ R    GL +
Sbjct: 579  QVVKVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKF-DFIVGKMVDARVCRKVLNGLEV 637

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1394
            +I    +      + LS DHV N   ++ A E+
Sbjct: 638  SIIPEEVQAFLPTTHLS-DHVTNCLPLWMALEE 669



 Score = 44.7 bits (104), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 153/388 (39%), Gaps = 55/388 (14%)

Query: 1031 FEEC-DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1089
            F  C D+ +GQ V G V  +      + I  H++  +  +  A     L+  +++F+ G 
Sbjct: 433  FFSCQDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLA--DVTLKNPEKKFYPGL 490

Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK---IL 1146
             V   VLS+  +KKLL L  +     + + T+ I       F    D   GRIS    + 
Sbjct: 491  KVKCRVLSVEAQKKLLILTRK---KALVESTLPI-------FQSYSDARPGRISHGFVVC 540

Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
                G +V+    + G V   EL    V++P    +E  F        GQ VK KVL+  
Sbjct: 541  IKEFGCIVRFYEDVKGLVPMQELTTETVTNP----EELFF-------VGQVVKVKVLKCD 589

Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1266
               +    + LS +S              T+ D   + + K + +   M+     + V +
Sbjct: 590  EEKK---MLRLSFKSV-------------TEEDVREEQIAKFDFIVGKMVDARVCRKVLN 633

Query: 1267 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI------GKLVAGRVLSVEPLSKRVEV 1320
                 ++  ++ A +  ++LSD          P+      G  +   +       K + +
Sbjct: 634  GLEVSIIPEEVQAFLPTTHLSDHVTNC----LPLWMALEEGDTICNLMCLTNYKKKGIVL 689

Query: 1321 TLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            T K           +  N S L VG  ++G +K +  YG+FI+     + GL  ++ + +
Sbjct: 690  TKKPHLKAYIEDGAVPKNFSELQVGMQMVGWVKNIMPYGVFISFP-YGVFGLAPIANMGD 748

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKR 1407
              +     I+   + V  K+  +D+EK+
Sbjct: 749  QFIKETSGIFDIDQTVVAKVTNLDEEKQ 776



 Score = 43.9 bits (102), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 54/295 (18%)

Query: 1162 GRVHFTELKNIC------VSDPLSGYDEG--QFDPLSG-YDEGQFVKCKVLEISRTVRGT 1212
            G V +  + NIC      ++D L   D+G  +  PLS  +  G  ++C V  +     G 
Sbjct: 100  GLVGYLPICNICDAYTNILNDKLD-TDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKEG- 157

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
             H+ L L        S N  D++  +++          L P M + G V++V   G  + 
Sbjct: 158  -HISLKL--------SINPKDVNKALNSVA--------LKPAMTLSGCVESVEDHGYLVD 200

Query: 1273 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV---------AGRVLSVEPLSKRVEVTLK 1323
            +      K  L   S     S +++  +G+ V         +GRV+    LS+  +  +K
Sbjct: 201  IGIG-GTKAFLPKKS----TSSKQDLYVGQYVLVLIEDVKDSGRVVR---LSQNPQALVK 252

Query: 1324 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1383
                  A   +   L NL  G ++ G +KRV  +GL +T   ++  G+     L ED   
Sbjct: 253  AC----AETKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFL-SSFTGVVDFLHLDEDK-- 305

Query: 1384 NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1438
              E+ Y  G+++  +IL V    R++ L ++S         L +   E   E ++
Sbjct: 306  --ESTYSKGQEILARILYVQPSTRQVGLSLRSHLLPPGGAVLDLHFSERVGEVVQ 358


>gi|154274011|ref|XP_001537857.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415465|gb|EDN10818.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 566

 Score =  325 bits (832), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 198/564 (35%), Positives = 319/564 (56%), Gaps = 52/564 (9%)

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
             +  I  +  N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF + +L
Sbjct: 17   EISSISQIKVNDIVRGFVRRVADNGLFVTLGHNVIAYVRISDLSDSYLKEWQNEFQVNQL 76

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            V GRV+  +  S +++++LK S      ++ I  + +L  G  V G+++ VE +G FI I
Sbjct: 77   VRGRVILADAESNKLQMSLKESVLDPNYKTPIT-IKDLKRGQTVTGKVRNVEEFGAFIVI 135

Query: 1364 ENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
            + T NL GLCH +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+  
Sbjct: 136  DGTANLSGLCHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKD-- 193

Query: 1423 DNLQMSSEEESD-EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVP 1481
                  S++ESD E ++       S   ++      DMD+E E G  + +  ++   ++ 
Sbjct: 194  ------SDDESDGENVQGESEEIVSESEDDG-----DMDLELESGNDISMGGVDLEDTM- 241

Query: 1482 PLEVNLDDEQPDMDNGISQNQGHTDEAKT-------IDEKNNRHAKKKEKEERE------ 1528
                N D+ + D  +G  Q  G  D   T        D   N      E  E +      
Sbjct: 242  ----NGDNSESDSSDGDVQMTGTKDAGITGGLVTSGFDWNGNNTIGSDEDNESDSDSDNK 297

Query: 1529 ----------QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVE 1578
                      QEI+      L+ + P++  ++ERL+   PNSSF+W+KYMAF L +++V+
Sbjct: 298  AAVKKKKRRKQEIQVDRTGDLDTNGPQSVADYERLLLGEPNSSFLWLKYMAFQLELSEVD 357

Query: 1579 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVH 1638
            KAR IAERAL++I+I ++ EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H
Sbjct: 358  KAREIAERALRSISIGQDTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIH 415

Query: 1639 LALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRAL 1695
              L  +Y ++ ++  ADEL   ++ KKF  S K++L     L     + E  +A++ RA+
Sbjct: 416  ERLTSIYIQSGKHDKADELFQAILKKKFTQSPKIYLNFATFLFDTLAEPERGRALLPRAI 475

Query: 1696 LSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1753
             SLP H H+   S+   LEF+  NG  +RGR++FEG++S +PKR DLW++ LD EI+ GD
Sbjct: 476  QSLPTHTHVDITSKFGQLEFRSPNGDVERGRTIFEGLISSFPKRVDLWNVLLDLEIKNGD 535

Query: 1754 VDLIRGLF-ERAISLSLPPKKMKF 1776
            ++ +RGLF +R     +P ++ + 
Sbjct: 536  MEQVRGLFLKRFWGWDIPLRRTRL 559



 Score = 45.4 bits (106), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 22/181 (12%)

Query: 278 SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS 336
           S +KV DI  +  V RV D GL + L       +  AYV ISD+++  +++ + +++   
Sbjct: 22  SQIKVNDIV-RGFVRRVADNGLFVTL-----GHNVIAYVRISDLSDSYLKEWQNEFQVNQ 75

Query: 337 CVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGMVVKGKVIAVDSFGA 389
            VR R++    L    +  L+ S  E ++        T  D+K G  V GKV  V+ FGA
Sbjct: 76  LVRGRVI----LADAESNKLQMSLKESVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGA 131

Query: 390 IVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 445
            +   G   +  LC    M+E ++    K F+ G  +  +++ +    +RI++  K +  
Sbjct: 132 FIVIDGTANLSGLCHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYF 191

Query: 446 K 446
           K
Sbjct: 192 K 192



 Score = 45.1 bits (105), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 31/197 (15%)

Query: 629 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 688
           S  S I  N +V G+V  + + G FV     +  +   S   D    +    + V Q VR
Sbjct: 19  SSISQIKVNDIVRGFVRRVADNGLFVTLGHNVIAYVRISDLSDSYLKEWQNEFQVNQLVR 78

Query: 689 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 748
             ++  ++E+ ++ +SLK+S         +  ++     I  L+                
Sbjct: 79  GRVILADAESNKLQMSLKESV--------LDPNYKTPITIKDLKR--------------- 115

Query: 749 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 801
            G  + GKV    +FG  +  +  +++ G     ++A   VE        G +++A I+ 
Sbjct: 116 -GQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVEDARKLFEKGDIVKAKIVK 174

Query: 802 VAKAERLVDLSLKTVFI 818
           +   +  + L LK  + 
Sbjct: 175 IDLNKERISLGLKASYF 191


>gi|169844731|ref|XP_001829086.1| U3 snoRNP-associated protein Rrp5 [Coprinopsis cinerea okayama7#130]
 gi|116509826|gb|EAU92721.1| U3 snoRNP-associated protein Rrp5 [Coprinopsis cinerea okayama7#130]
          Length = 1462

 Score =  322 bits (825), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 209/598 (34%), Positives = 329/598 (55%), Gaps = 36/598 (6%)

Query: 1239 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1298
            D   + + ++ DL     V+G+VKN+ ++G F+ + R +DA+V +  L D YV+  +  F
Sbjct: 870  DVTDREISELSDLQVGDTVRGFVKNIANQGLFVTIGRGIDARVQIRELFDEYVKDWKPRF 929

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
               +LV GRVLS++  + +VE+T K+ D     +S  + +     G  + G IKR+E YG
Sbjct: 930  KERQLVKGRVLSIDVDNNQVELTFKSGDLSREKKSLKDTVKE---GQKISGVIKRIEHYG 986

Query: 1359 LFITIENTNLVGLCHVSELSED-HVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMKS 1415
            LFI I+ T L GLCH ++LS++   D  E +  +R G+ VK  ++    EK RISL +K 
Sbjct: 987  LFIEIKGTKLTGLCHKTQLSDNPDADVAEALRQFRVGDLVKAAVIA--SEKGRISLSLKP 1044

Query: 1416 SYFKNDADNLQMSSEEESDEAIEEVG---------------SYNRSSLLENSSVAVQDMD 1460
            S F           +    EA E  G                   S   E S      M 
Sbjct: 1045 SLFGEGDFEEDEEEDGSQAEAPESFGVITDDESEGEEEGEHQEGPSDKDEASDSDDDAMQ 1104

Query: 1461 MESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD-----NGISQNQGHTDEAKTIDEKN 1515
            ++ +D     LA     A+ P          P +          QNQ   DE++  +  +
Sbjct: 1105 VDLDDTS---LAMPTPSATKPSQSQQPSTSAPSLTLSGGFQWFDQNQESGDESEADESSD 1161

Query: 1516 NRH--AKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1573
            + H    KK +++R++EI+      +    P +  +FERL+  SPN S++WI+YM+F L 
Sbjct: 1162 DEHEDGSKKRRKKRKKEIQQDLTADMHTKLPDSNSDFERLLLGSPNFSYLWIQYMSFQLQ 1221

Query: 1574 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1633
            +++V+KAR IA+RA+QTIN REE E+LN+W+A  NLEN YG   EE++   F+ A +  D
Sbjct: 1222 ISEVDKAREIAKRAIQTINFREEQERLNVWIALLNLENVYGT--EESLEATFKDAARAND 1279

Query: 1634 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQ 1692
             K +HL L  +++++ + + A++   +  KKF  SCKVW    +  LK  + E  + ++ 
Sbjct: 1280 SKTIHLRLAAIFDQSGKPEKAEQQFQRTCKKFGKSCKVWTLFSEHYLKLGKLEESRKLLP 1339

Query: 1693 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1752
            R+L SL + KH+K IS+ A LE+K G  +RGR++FEGI+  +PKR DLWS+Y+D E    
Sbjct: 1340 RSLQSLEKRKHLKTISRFAQLEYKLGEPERGRTLFEGIVDSHPKRWDLWSVYIDMEGVQQ 1399

Query: 1753 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            ++  IR LFER ++L +   K K  FKK+L+ EK +G++E +E VK+KA+E+ +   A
Sbjct: 1400 NIPAIRNLFERVLTLKMTSHKAKSFFKKWLDLEKRLGDDEGVENVKRKAVEWTQKAAA 1457



 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 178/692 (25%), Positives = 312/692 (45%), Gaps = 57/692 (8%)

Query: 58  LPTIFHVGQLVSCIVLQ-----------LDDDKKEIGK--RKIWLSLRLSLLYKGLSLET 104
           L  +F +GQ V  +V             L   + E+ K  +++ LSL   L+ +G+ ++ 
Sbjct: 186 LGQMFAIGQYVRAVVTATFQGGASDPSGLYRSRDELAKLCKRVELSLSPDLVNEGVRVDD 245

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSID 163
           ++ G  LTA VKS+EDHGYIL  G+P+  GFL   +  E  G   +  G L    V  + 
Sbjct: 246 LKSGFTLTAAVKSVEDHGYILDLGIPNADGFLSFKDAKEVEGSSKLAVGQLCNVTVSKLA 305

Query: 164 RTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGT 223
             ++   +++ P T +     ++   S+  ++PG +V   V  +  +GV+L  L +F G+
Sbjct: 306 ANKRTCTVTASPSTFTSSAITEVS--SVTSIIPGSLVQALVTDVGADGVILQILGFFEGS 363

Query: 224 VDIFHLQNTFPTTNWKNDYNQHKKVNARILF---VDPTSRAVGLT-----LNPYLLHNRA 275
           VD  HL+ + P           +KV  R+L+    +P   AV L      L    L +  
Sbjct: 364 VDRIHLRRSGPP-------KIGQKVKGRVLYQYSTEPPRLAVALAEHIVGLANVQLSDEN 416

Query: 276 PPSHVKV------GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 329
           P S  ++      G I D  KVV+V+   GL L++         +  IS ++++ +  + 
Sbjct: 417 PASTQRLEEAYPFGHILDSVKVVKVEPERGLFLEVAP---GQEGFAHISHISDDHLPSVS 473

Query: 330 KK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 387
               +K  +  R R+ G+   +GL    LK S FE       D KPG +VKG + +V   
Sbjct: 474 PTGPWKVNTLHRARVTGYHSFDGLLQLSLKPSIFEQKFLQLEDFKPGEIVKGTIKSVSDS 533

Query: 388 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLV 445
              V   G +  +    H ++  +  P ++FK G  +  +VL V S  KRI++T KKTL+
Sbjct: 534 AIFVSLSGNIDGVIWPNHFADIRLKHPTRRFKPGNPIKCKVLVVDSDRKRISLTAKKTLL 593

Query: 446 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 505
           +S L I+S+  +     +THG I K+ +    V F+N ++      E       + +  +
Sbjct: 594 ESDLPIVSNVGDVKVGTVTHGVIFKVLEKHLMVEFFNNLKASVSAKEASESHTVKLADAF 653

Query: 506 HVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 562
            VG+ V+ RI S      RI  S     +  T V + ++V+ G  V G +  V    +V+
Sbjct: 654 SVGRAVRVRIQSVDREQGRITASIRQAAVSQTPVVDVNVVEEGEAVGGTIAEVHAEHIVI 713

Query: 563 YVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYS 619
             +     +  +  + LA H  +  A V K ++KPG   + L+V   N    +++     
Sbjct: 714 -TLQPTKVRALLTVKSLASHRNISPAQVHK-LVKPGDSIEDLIVATKNPEKGIVIVTTKP 771

Query: 620 LINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
              +A  L    S   +     V G V    + G  V+   +++G    +   D    D+
Sbjct: 772 KPKAAAPLKGQVSLETVAVGQQVGGRVLRHTKQGALVKITSKISGILHPTDTADDY--DV 829

Query: 678 SKTY-YVGQSVRSNILDVNSETGRITLSLKQS 708
            K +  V   + ++++ V+ +  ++TLS ++S
Sbjct: 830 DKAFPPVDSLITASVVRVDKDKQQLTLSTRES 861



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 157/361 (43%), Gaps = 31/361 (8%)

Query: 373 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 432
           PG +V+  V  V + G I+Q  G  +      H+      K G+K K     V      +
Sbjct: 336 PGSLVQALVTDVGADGVILQILGFFEGSVDRIHLRRSGPPKIGQKVK---GRVLYQYSTE 392

Query: 433 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW----------ITKIE-KHGCFVRFY 481
             R+ V   + +V      LS    A+ + +   +          + K+E + G F+   
Sbjct: 393 PPRLAVALAEHIVGLANVQLSDENPASTQRLEEAYPFGHILDSVKVVKVEPERGLFLEVA 452

Query: 482 NGVQGFAPRSELGLD--PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
            G +GFA  S +  D  P   P+  + V  + + R+         + LS  +KP+ + E 
Sbjct: 453 PGQEGFAHISHISDDHLPSVSPTGPWKVNTLHRARVTGYHSFDGLLQLS--LKPS-IFEQ 509

Query: 540 DLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 593
             ++L     G +V G +  V+ +A+  +V   G   G I   H AD  L+H T      
Sbjct: 510 KFLQLEDFKPGEIVKGTIKSVSDSAI--FVSLSGNIDGVIWPNHFADIRLKHPTRR---F 564

Query: 594 KPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 652
           KPG     ++LV+D++   + L+AK +L+ S   + S+   +   +V HG +  ++E   
Sbjct: 565 KPGNPIKCKVLVVDSDRKRISLTAKKTLLESDLPIVSNVGDVKVGTVTHGVIFKVLEKHL 624

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
            V F   L       +A +     L+  + VG++VR  I  V+ E GRIT S++Q+  S 
Sbjct: 625 MVEFFNNLKASVSAKEASESHTVKLADAFSVGRAVRVRIQSVDREQGRITASIRQAAVSQ 684

Query: 713 T 713
           T
Sbjct: 685 T 685


>gi|353236542|emb|CCA68534.1| related to RRP5-processing of pre-ribosomal RNA [Piriformospora
            indica DSM 11827]
          Length = 1501

 Score =  320 bits (819), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 366/1333 (27%), Positives = 622/1333 (46%), Gaps = 156/1333 (11%)

Query: 521  ASRRINLSFMMKP--TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
            ASRR+ LS + +     +S  DL+K   L + +  V      + + IA     G +P +H
Sbjct: 274  ASRRLELSLLPQQFNAGLSGKDLIKGQVLPAVITSVEDYGYTLDFAIAN--ISGFLPFQH 331

Query: 579  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 636
             AD  +++  +   +K G      +V   ++  +      S +  A+   LPS AS +HP
Sbjct: 332  -ADQDDNSQEVPHNMKIGTWLATTVVKMEDNGRVCNVGIGSKVPKAELSTLPS-ASAVHP 389

Query: 637  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DV- 694
              +V   +      G  V+ LG  +G         G     + +  VG+ +++ IL D+ 
Sbjct: 390  GCLVKAMITESAPEGLNVQVLGLFSGTIHPLHVSPG-----AASTAVGKKIKARILWDIP 444

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG-FIIGSVI 753
             +E  +  LS      S      ++   L         +S ++G E + ++  F IG+++
Sbjct: 445  GTEPTQFALSTLPHILS------LRPRLL---------TSPNDGEESQDLQAVFPIGTIL 489

Query: 754  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVA 803
            +       D    +  +    + G +    +A   V S          G+V +A ++   
Sbjct: 490  DAVKVARVDTDRSLFLQVAEGLLGTVHISDVADEHVASLPDSSGPYKVGTVQRARVIGHN 549

Query: 804  KAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLV 862
              +  +  S+K +V   ++ +A+                D+ V   V   V  + E  L 
Sbjct: 550  PLDGTLRCSMKESVLSQKWLKAD----------------DIQVGSLVKGTVISLNEKGLF 593

Query: 863  LSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL-PSSS----TAGRLLL--L 915
            +SL    H+I + +       K P+++F  G+ +   V+ + P+ +    TA + L+   
Sbjct: 594  VSLSGNVHAIVWPNHYADIPLKHPERKFRVGKLIKCRVLVVDPAQNRITLTAKKTLMEST 653

Query: 916  LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 975
            L  IS  ET+            V ++  A + +I    L ++F     G I   E  +  
Sbjct: 654  LPIISAIETNL-----------VNAVTHAIVFKISERVLTVEFYNNVRGIIPYKEALE-- 700

Query: 976  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEI--GSKLLFEE 1033
              + +NL   FKIGQ V  RII              E+ ++  +L  S I   S +   +
Sbjct: 701  -TLGQNLDQAFKIGQVVKVRII--------------EVKLEAGILVASIIKANSPVGPSK 745

Query: 1034 CDV----SIGQRVTGYVYKVDNEWALLTI--SRHLKAQLFILDSAYEPSELQEFQRRFHI 1087
             D+     IGQ V+G V  +  E   +T+  S  L        +    + + + +    I
Sbjct: 746  QDILAMTEIGQSVSGTVSDIHKEHVAITLQPSGALALLTLNNLANARDTSIAQLRSSLKI 805

Query: 1088 GKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
            G  +   V+ S N EK L+ +V++P      D + ++ N N      E   +G R++ ++
Sbjct: 806  GDDLRDLVIVSKNSEKGLVIVVVKP-----KDNSKNMFNLNDPNLKLENLQLGQRVTGVV 860

Query: 1147 --SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1204
                  G V+++   LYG +H TE+ +   + P       +  P+        V   V  
Sbjct: 861  LKHSKKGAVIKMSKRLYGCLHLTEISDDYSTHP-------KLPPIDS-----VVTAAVAN 908

Query: 1205 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1264
            + +T R    ++LS+R SL           S+ VD     +    +L     V+G+V  V
Sbjct: 909  VDKTHR---LLDLSIRPSL-----LEPQTQSSIVDP---RIRSFAELRIGQKVRGFVTEV 957

Query: 1265 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
               G F+ LS  LDAK+ + +L D Y +  +  F   ++V GR+L +     + E+TL++
Sbjct: 958  VDFGVFVALSPSLDAKIPVKHLFDVYNKDWKGSFTPDQMVEGRILRINVDKNQAEMTLRS 1017

Query: 1325 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--- 1381
             +    S +    LS+   G  V G I+ +  YG+FI I+ +++ GLCH SEL++ +   
Sbjct: 1018 GE--ITSLATNVTLSDFSKGQRVDGVIQNIAEYGVFIQIKGSDIKGLCHRSELADPNGPS 1075

Query: 1382 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS-YFKNDADNLQMSSEEESDEAIEEV 1440
             D +   ++ G+ V+  I+ VD EK+R+   +K S +F  + ++++M+S  E+ +   + 
Sbjct: 1076 ADEMLKTFKKGDVVRALIISVDAEKKRLGFSLKPSHFFDEELEDVEMASGGENQDQNSDD 1135

Query: 1441 GS---YNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNG 1497
            GS    N     E  S   Q+ D    DG S +  + E+    P   +NL          
Sbjct: 1136 GSEIVMNGQEPDEEDSGDEQEQDT---DGHSEITREPENEMGAP--AINLAAPL----RW 1186

Query: 1498 ISQNQGHTDEAK-TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS 1556
             + N    DEA+ + DE +   A+KK K  R+ EI       L+  AP++  +FERL+ +
Sbjct: 1187 TAANDAEEDEAEISSDEDDGGPARKKRK--RKHEILQDLTLDLQSRAPQSTADFERLLLA 1244

Query: 1557 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1616
            SPNSS++W+++MAF L ++D+EKAR +  RAL+ IN REE E+LN+W+   NLE  YG  
Sbjct: 1245 SPNSSYLWLQFMAFQLQLSDIEKAREVGRRALKAINFREEQERLNVWIGLLNLEVTYGT- 1303

Query: 1617 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRV 1676
             E  +  +F+ A +  D K VH  L  L +  ++ + A+E   K  KKF  SCKVW    
Sbjct: 1304 -EATLDAIFKEAARANDSKTVHWRLALLLDDAQKPEQAEEQFRKSCKKFGSSCKVWTLFA 1362

Query: 1677 QRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1735
            +   K+   E  + ++ ++LLSL + KH+K  S+ A LE++ G  +RGR++FEGI+  + 
Sbjct: 1363 EHYFKRGMPEKARELLSKSLLSLEKRKHLKVASKFAQLEYRMGDPERGRTLFEGIVDTHR 1422

Query: 1736 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1795
            KR DLW+IY+D E    D+  IR + ERAI+L L  KK KFLFKK+LE EK +G++E   
Sbjct: 1423 KRLDLWNIYIDMETGQRDIHRIRNICERAITLKLSKKKAKFLFKKWLELEKRLGDKEGEA 1482

Query: 1796 YVKQKAMEYVEST 1808
             VK KA+E+ +S+
Sbjct: 1483 VVKVKAVEWTQSS 1495



 Score =  166 bits (419), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 151/516 (29%), Positives = 235/516 (45%), Gaps = 45/516 (8%)

Query: 85  RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-----RN 139
           R++ LSL       GLS + + +G VL A + S+ED+GY L F + + +GFLP     ++
Sbjct: 276 RRLELSLLPQQFNAGLSGKDLIKGQVLPAVITSVEDYGYTLDFAIANISGFLPFQHADQD 335

Query: 140 NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI-SIDLLVPGM 198
           + ++    ++K G  L   V  ++   +V  +       SK    +L  + S   + PG 
Sbjct: 336 DNSQEVPHNMKIGTWLATTVVKMEDNGRVCNVG----IGSKVPKAELSTLPSASAVHPGC 391

Query: 199 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---- 254
           +V   +      G+ +  L  F+GT+   H+     +T         KK+ ARIL+    
Sbjct: 392 LVKAMITESAPEGLNVQVLGLFSGTIHPLHVSPGAASTAVG------KKIKARILWDIPG 445

Query: 255 VDPTSRAVG-----LTLNPYLLH--NRAPPSH-----VKVGDIYDQSKVVRVDRGLGLLL 302
            +PT  A+      L+L P LL   N    S        +G I D  KV RVD    L L
Sbjct: 446 TEPTQFALSTLPHILSLRPRLLTSPNDGEESQDLQAVFPIGTILDAVKVARVDTDRSLFL 505

Query: 303 DIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKAS 359
            +    + T   V ISDVA+E V  L      YK G+  R R++G   L+G     +K S
Sbjct: 506 QVAEGLLGT---VHISDVADEHVASLPDSSGPYKVGTVQRARVIGHNPLDGTLRCSMKES 562

Query: 360 AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK 419
                     D++ G +VKG VI+++  G  V   G V A+    H ++  +  P +KF+
Sbjct: 563 VLSQKWLKADDIQVGSLVKGTVISLNEKGLFVSLSGNVHAIVWPNHYADIPLKHPERKFR 622

Query: 420 VGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 477
           VG  +  RVL V     RIT+T KKTL++S L I+S+        +TH  + KI +    
Sbjct: 623 VGKLIKCRVLVVDPAQNRITLTAKKTLMESTLPIISAIETNLVNAVTHAIVFKISERVLT 682

Query: 478 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM-----SSIPASRRINLSFMMK 532
           V FYN V+G  P  E     G      + +GQVVK RI+     + I  +  I  +  + 
Sbjct: 683 VEFYNNVRGIIPYKEALETLGQNLDQAFKIGQVVKVRIIEVKLEAGILVASIIKANSPVG 742

Query: 533 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 568
           P++     + ++G  VSG V  +    V + +   G
Sbjct: 743 PSKQDILAMTEIGQSVSGTVSDIHKEHVAITLQPSG 778



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 131/606 (21%), Positives = 230/606 (37%), Gaps = 116/606 (19%)

Query: 502  SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLGSLVSGVVDVVTP 557
            S  Y VG V + R++   P    +  S  MK + +S+     D +++GSLV G V  ++ 
Sbjct: 532  SGPYKVGTVQRARVIGHNPLDGTLRCS--MKESVLSQKWLKADDIQVGSLVKGTV--ISL 587

Query: 558  NAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 613
            N   ++V   G     +   H AD    H E    +  +IK      ++LV+D   + + 
Sbjct: 588  NEKGLFVSLSGNVHAIVWPNHYADIPLKHPERKFRVGKLIKC-----RVLVVDPAQNRIT 642

Query: 614  LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 673
            L+AK +L+ S   + S       N+V H  V  I E    V F   + G  P  +A++  
Sbjct: 643  LTAKKTLMESTLPIISAIETNLVNAVTHAIVFKISERVLTVEFYNNVRGIIPYKEALETL 702

Query: 674  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS-------------------CCSSTD 714
              +L + + +GQ V+  I++V  E G +  S+ ++                     S T 
Sbjct: 703  GQNLDQAFKIGQVVKVRIIEVKLEAGILVASIIKANSPVGPSKQDILAMTEIGQSVSGTV 762

Query: 715  ASFMQEHFLL--------------------EEKIAMLQSSKHNGSELKWV--------EG 746
            +   +EH  +                    +  IA L+SS   G +L+ +        +G
Sbjct: 763  SDIHKEHVAITLQPSGALALLTLNNLANARDTSIAQLRSSLKIGDDLRDLVIVSKNSEKG 822

Query: 747  FIIGSVIEGKVHESNDFGV------VVSFEEHSDVYGFITHHQLAGATVESG-------- 792
             +I  V++ K +  N F +      + + +    V G +  H   GA ++          
Sbjct: 823  LVI-VVVKPKDNSKNMFNLNDPNLKLENLQLGQRVTGVVLKHSKKGAVIKMSKRLYGCLH 881

Query: 793  ------------------SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKK 834
                              SV+ AA+ +V K  RL+DLS++   ++         Q+    
Sbjct: 882  LTEISDDYSTHPKLPPIDSVVTAAVANVDKTHRLLDLSIRPSLLE------PQTQSSIVD 935

Query: 835  RKREASKDLGVHQTVNAIV-EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNG 893
             +  +  +L + Q V   V E+V     V   P  +  I    + D   + + +  F   
Sbjct: 936  PRIRSFAELRIGQKVRGFVTEVVDFGVFVALSPSLDAKIPVKHLFDVYNKDW-KGSFTPD 994

Query: 894  QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLE 953
            Q V   ++ +        + L    I+   T+ +      S +  G  V   I  I    
Sbjct: 995  QMVEGRILRINVDKNQAEMTLRSGEITSLATNVT-----LSDFSKGQRVDGVIQNIAEYG 1049

Query: 954  LRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1012
            + ++  G    G  H +E+ D      + +   FK G  V A II+     D +K  L  
Sbjct: 1050 VFIQIKGSDIKGLCHRSELADPNGPSADEMLKTFKKGDVVRALIISV----DAEKKRLG- 1104

Query: 1013 LSIKPS 1018
             S+KPS
Sbjct: 1105 FSLKPS 1110



 Score = 41.6 bits (96), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 142/369 (38%), Gaps = 35/369 (9%)

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKP-GKKFKVGAELVFR 427
           D+  G V+   + +V+ +G  + F    +    P  H  + +  +      K+G  L   
Sbjct: 295 DLIKGQVLPAVITSVEDYGYTLDFAIANISGFLPFQHADQDDNSQEVPHNMKIGTWLATT 354

Query: 428 VLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
           V+ ++   +   V     + K++L+ L S +      +    IT+    G  V+      
Sbjct: 355 VVKMEDNGRVCNVGIGSKVPKAELSTLPSASAVHPGCLVKAMITESAPEGLNVQVLGLFS 414

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS-------- 537
           G      L + PG   ++   VG+ +K RI+  IP +     +    P  +S        
Sbjct: 415 GTI--HPLHVSPGAASTA---VGKKIKARILWDIPGTEPTQFALSTLPHILSLRPRLLTS 469

Query: 538 ------EDDL---VKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 587
                   DL     +G+++  V V  V  +  +   +A+G   GT+    +AD  EH  
Sbjct: 470 PNDGEESQDLQAVFPIGTILDAVKVARVDTDRSLFLQVAEGLL-GTVHISDVAD--EHVA 526

Query: 588 VMKSVIKP---GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 644
            +     P   G      ++  N     L  +    + S + L +D   I   S+V G V
Sbjct: 527 SLPDSSGPYKVGTVQRARVIGHNPLDGTLRCSMKESVLSQKWLKAD--DIQVGSLVKGTV 584

Query: 645 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
            ++ E G FV   G +      +   D       + + VG+ ++  +L V+    RITL+
Sbjct: 585 ISLNEKGLFVSLSGNVHAIVWPNHYADIPLKHPERKFRVGKLIKCRVLVVDPAQNRITLT 644

Query: 705 LKQSCCSST 713
            K++   ST
Sbjct: 645 AKKTLMEST 653


>gi|194374585|dbj|BAG57188.1| unnamed protein product [Homo sapiens]
          Length = 771

 Score =  320 bits (819), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 216/701 (30%), Positives = 363/701 (51%), Gaps = 40/701 (5%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
           +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78  ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58  -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
            LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138 HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
           S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196 SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
           S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256 SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315

Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
               T + N     + V A IL V P +R V L+L P  L    P + +    +G + D 
Sbjct: 316 KKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370

Query: 289 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
             V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 371 VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427

Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
           + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 428 DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487

Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
             +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 488 ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 547

Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
           +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 548 FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607

Query: 527 LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
           LSF +        +P   S+     + +G LV   V   T + + V V+     +  +PT
Sbjct: 608 LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666

Query: 577 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
            HL+DH+ +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S I
Sbjct: 667 SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLRRKPALVSTVEGGQDPKNFSEI 726

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 675
           HP  ++ G+V +I + G F++F   L+G AP++      R+
Sbjct: 727 HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMCSSCRS 767



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 148/644 (22%), Positives = 258/644 (40%), Gaps = 111/644 (17%)

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVK-PGKKFKVGA 422
           V +   +KPGM++ G V +++  G +V     G +A  PL    E+   K  G K KVG 
Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQ 237

Query: 423 ELVFRVLGVKSK----RITVTHKKTLVKSKLAILSSYAEATDR-----------LITHGW 467
            L   V  VK       ++V H +           S A AT++           L+    
Sbjct: 238 YLNCIVEKVKGNGGVVSLSVGHSEV----------STAIATEQQSWNLNNLLPGLVVKAQ 287

Query: 468 ITKIEKHGC---FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
           + K+   G    F+ F+ GV  F     + LDP  + +  Y   Q V+  I+   P +R 
Sbjct: 288 VQKVTPFGLTLNFLTFFTGVVDF-----MHLDP--KKAGTYFSNQAVRACILCVHPRTRV 340

Query: 525 INLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 581
           ++LS     ++P R     L +L     G        AV+  V  +G+ K    T  L D
Sbjct: 341 VHLSLRPIFLQPGR----PLTRLSCQNLG--------AVLDDVPVQGFFKKAGATFRLKD 388

Query: 582 ------HLEHATVMKSVI-----KPGYEFDQLLVLDNESSNL-LLSAKYSLINSAQQLPS 629
                  L H +  K+V      KPG      ++  ++   L LLS + S+I  AQ L  
Sbjct: 389 GVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIE-AQYL-- 445

Query: 630 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 689
               I P +VV G V  I   G  V+   ++ G  P     D    +  K Y++G  V+ 
Sbjct: 446 RYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKC 505

Query: 690 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 749
            +L  + E  ++ ++LK++              L+E K+ ++         L+   GFII
Sbjct: 506 RVLLCDPEAKKLMMTLKKT--------------LIESKLPVITCYADAKPGLQ-THGFII 550

Query: 750 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDV 802
                       D+G +V F  +++V G +  H+L+   +        +G V++  +L+ 
Sbjct: 551 ---------RVKDYGCIVKF--YNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 803 AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA-IVEIVKENYL 861
             ++  + LS K         ++   + +     ++  K + + Q V+  ++E  K+   
Sbjct: 600 EPSKERMLLSFKL-------SSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLE 652

Query: 862 VLSLPEYNHS-IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 920
           V  LP    + +  + +SD+         +L    ++  V+ L  S + GR+LL  K   
Sbjct: 653 VAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCL--SQSEGRVLLRRKPAL 710

Query: 921 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 964
            +     +  K  S    G L+   +  IK   + ++F  G  G
Sbjct: 711 VSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSG 754



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 150/337 (44%), Gaps = 57/337 (16%)

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1144 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVL 461

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1323 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613


>gi|402220022|gb|EJU00095.1| U3 snoRNP-associated protein Rrp5 [Dacryopinax sp. DJM-731 SS1]
          Length = 1492

 Score =  317 bits (813), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 218/758 (28%), Positives = 399/758 (52%), Gaps = 80/758 (10%)

Query: 1095 VLSINKEKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1153
            V+S N EK+++ L V  P  +     +  IS   +    H G I+ G++  I    G   
Sbjct: 768  VVSKNPEKRIVILAVTLPGSNAGPSSSTAISWKTL----HVGQILLGQV--IGEKNGSTS 821

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V++  +L GR+H  +L +          + G   P +G      +K  V+ +    R   
Sbjct: 822  VRLSQYLIGRLHPLDLTD--------NLENGIVFPRAG----SALKVAVVGVDPHAR--- 866

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
                    +LD   ST  S L+ +   P     +  +++L  +  V G VKN++  G F+
Sbjct: 867  --------TLD--LSTRPSRLNPESHPPIVDPEITSLDNLQVDDKVGGVVKNISDSGLFV 916

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR--- 1328
             L R + A+V +  L D +V+  +  F + ++V G++  V+    RV++++++   +   
Sbjct: 917  SLGRNITARVQIKELFDEFVKDWQTRFSVNQVVKGKITHVDHEKNRVDMSMRSGVRKHHK 976

Query: 1329 -TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
             +  + ++ ++ +      V G++  +  YGLFI I+++++ GLCH SELS+    +++ 
Sbjct: 977  SSGKEDKLRHMKDFEKRQKVTGKVTSITKYGLFILIDDSDVSGLCHHSELSDTKQGDVQV 1036

Query: 1388 I---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKN------DADNLQMSSEEESDEAIE 1438
                +R G+ VK  IL +++E +++SLG+K SYF        D  + Q+ + +E+ E+ +
Sbjct: 1037 ALQGFRVGDTVKAVILWINEETKKVSLGLKPSYFTAEDYETADTPDDQLEASKEAGESED 1096

Query: 1439 E---------VGSYNRSSLLENSSVAVQDMDME--------------SEDGGSLVLAQIE 1475
            E         +G   ++ + E+ + +    D                S D GS   A   
Sbjct: 1097 EDENTTSWAGIGEGGKTDMDEDGAASFLGFDDVAEEEAESEDDVIILSGDHGSKSSAAPA 1156

Query: 1476 SRA-----SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE 1530
             ++     S P L+++   +     +  ++     +E+    E ++ H +KK+K  R  +
Sbjct: 1157 KKSNPATTSAPTLQLSGGFQWSHTVDDEAEEDAPANESDVESEASDSHPRKKKK--RGHQ 1214

Query: 1531 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1590
            I       +++  P +  +FERL+  SPNSSF+WI++M+F L ++DV+ AR IA+RAL+ 
Sbjct: 1215 IEEDLTLAMQERTPESVADFERLLLGSPNSSFLWIQFMSFYLQLSDVDNAREIAKRALKV 1274

Query: 1591 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1650
            IN REE EK+N+W+A  NLEN  G   EE++ K FQ A +  D K +HL +  +++ + +
Sbjct: 1275 INFREEQEKMNVWIALLNLENTTGT--EESLEKTFQDATRANDSKAIHLRMATIFDESGK 1332

Query: 1651 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQ 1709
             + A+++  + +KKF  S  VW       + Q + +  + ++ R+L SL + KHI+ I +
Sbjct: 1333 PEKAEDMHKRAVKKFNESTTVWTSFGHHYMSQGKLDEARELLPRSLKSLEKRKHIETILK 1392

Query: 1710 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1769
             A +E++ G  +RG+++FE I+  +PKR DLW +Y+D E + GD+  +R LF+R ++L L
Sbjct: 1393 FAQMEYELGEPERGKTLFEAIVDSHPKRLDLWFVYVDMEAKQGDLQTVRKLFDRMLALKL 1452

Query: 1770 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
               K K +FKK+LE EK +G+EE  E+VK +A+E++++
Sbjct: 1453 NTFKAKSVFKKWLELEKRLGDEEGQEHVKARAVEWMQN 1490



 Score =  182 bits (462), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 141/490 (28%), Positives = 236/490 (48%), Gaps = 45/490 (9%)

Query: 58  LPTIFHVGQLV-SCIV------------LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 104
           L +IFHVGQ V +C+V            L+   ++ E   R++ L+L   ++ +G+ ++ 
Sbjct: 201 LASIFHVGQYVQACVVNVRSAGTRAAPELEKPKNEMEAMARRVELTLVPEVVNEGVVIKD 260

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 164
           + +G +L   +KS+EDHGY +  G+P  +GFLP  N   +S   + PG LL   V  +  
Sbjct: 261 LVKGFMLPGAIKSVEDHGYSVELGIPHLSGFLPFTNTPPSSS-RLSPGHLLTCTVSEVPA 319

Query: 165 TRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGT 223
           ++++  L+  P    +     L  +S +  L+PG +V   + + + +G+ L  L +F GT
Sbjct: 320 SKRICTLTIQPSQKEEV----LDQVSNVTSLLPGTLVRGLITASVTSGLNLQILGFFEGT 375

Query: 224 VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--PYLLHNRAPP---- 277
           +D+ HL    P       Y    K+ AR+L+  P S      L+  P+++   AP     
Sbjct: 376 IDLTHLPKD-PAL-----YKVGTKLKARVLWHLPGSSPPKFALSALPHVVDLAAPEVDGV 429

Query: 278 ---SHVKVGDIYDQSKVVRVDR--GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK-- 330
                   G+I    KVVRV+   GL ++LD       T  +V I+++++E +  L    
Sbjct: 430 STQEKHPYGEILHGVKVVRVEAEWGLSVVLD----DEETRGFVHIANISDEHIPALSATS 485

Query: 331 -KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 389
             +K G+    R+LGF  L+GL    LK S  E       D  PG +VKG +  +   G 
Sbjct: 486 GAWKVGTKHDARVLGFYALDGLLRLSLKPSQLERRFVQTGDFTPGEIVKGAIENLTDVGM 545

Query: 390 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKS 447
            V   G +     L  +++ E+  P K+FK GA +  R+L V  +  R+T+T KK+L+ S
Sbjct: 546 FVDVGGDISGRVALDQLADIELKHPEKRFKAGASVKCRILAVDPEHGRLTLTCKKSLLSS 605

Query: 448 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 507
            L I++   +A   ++    ++K+   G  V  Y GV+GF P  E           +   
Sbjct: 606 DLPIIAKLDDAKQGMVADAVVSKVLPSGALVMLYGGVKGFVPIREASEGYIKSVDEILKP 665

Query: 508 GQVVKCRIMS 517
           GQ VK +++S
Sbjct: 666 GQAVKVKVLS 675



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            D +P  IV+G ++N+T  G F+ +   +  +V L  L+D  ++ PEK F  G  V  R+L
Sbjct: 526  DFTPGEIVKGAIENLTDVGMFVDVGGDISGRVALDQLADIELKHPEKRFKAGASVKCRIL 585

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            +V+P   R+ +T K S   ++    I  L +   G +    + +V   G  + +    + 
Sbjct: 586  AVDPEHGRLTLTCKKS-LLSSDLPIIAKLDDAKQGMVADAVVSKVLPSGALVMLYG-GVK 643

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            G   + E SE ++ +++ I + G+ VKVK+L V+ E+  I   ++ +
Sbjct: 644  GFVPIREASEGYIKSVDEILKPGQAVKVKVLSVNTEEGNILASLRQA 690



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 102/462 (22%), Positives = 187/462 (40%), Gaps = 69/462 (14%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII- 997
            G+LV+  IT      L L+    F G I +T +  D +         +K+G  + AR++ 
Sbjct: 349  GTLVRGLITASVTSGLNLQILGFFEGTIDLTHLPKDPAL--------YKVGTKLKARVLW 400

Query: 998  --AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY-VYKVDNEWA 1054
                S+ P       + LS  P ++ ++      +  +     G+ + G  V +V+ EW 
Sbjct: 401  HLPGSSPPK------FALSALPHVVDLAAPEVDGVSTQEKHPYGEILHGVKVVRVEAEWG 454

Query: 1055 LLTISRHLKAQLFI----LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1110
            L  +    + + F+    +   + P+ L      + +G      VL       LLRL L+
Sbjct: 455  LSVVLDDEETRGFVHIANISDEHIPA-LSATSGAWKVGTKHDARVLGFYALDGLLRLSLK 513

Query: 1111 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK----ILSGVGGLVVQIGPHLYGRVHF 1166
            P Q               + F+  GD   G I K     L+ VG + V +G  + GRV  
Sbjct: 514  PSQ-------------LERRFVQTGDFTPGEIVKGAIENLTDVG-MFVDVGGDISGRVAL 559

Query: 1167 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1226
             +L +I +  P     E +F        G  VKC++L +        H  L+L       
Sbjct: 560  DQLADIELKHP-----EKRFK------AGASVKCRILAVDPE-----HGRLTL------- 596

Query: 1227 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1286
             +   S LS+D+      + K++D    M+    V  V   G  +ML   +   V +   
Sbjct: 597  -TCKKSLLSSDLPI----IAKLDDAKQGMVADAVVSKVLPSGALVMLYGGVKGFVPIREA 651

Query: 1287 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1346
            S+GY++S ++    G+ V  +VLSV      +  +L+ +       +   ++ ++ VG  
Sbjct: 652  SEGYIKSVDEILKPGQAVKVKVLSVNTEEGNILASLRQAQPSYQPAAPGVDVEDIAVGSN 711

Query: 1347 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
            V  +IK V++  + ++I+      L  ++ L+      +E +
Sbjct: 712  VEAEIKDVQAINVVLSIQPGGQTALLSLANLANRRNTTVEAL 753



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 152/364 (41%), Gaps = 33/364 (9%)

Query: 373 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--- 429
           PG +V+G + A  + G  +Q  G  +    L H+      K    +KVG +L  RVL   
Sbjct: 348 PGTLVRGLITASVTSGLNLQILGFFEGTIDLTHLP-----KDPALYKVGTKLKARVLWHL 402

Query: 430 -GVKSKRITVT---HKKTLVKSKLAILSSYAEATDRLITHGW-ITKIEKHGCFVRFYNG- 483
            G    +  ++   H   L   ++  +S+  +     I HG  + ++E         +  
Sbjct: 403 PGSSPPKFALSALPHVVDLAAPEVDGVSTQEKHPYGEILHGVKVVRVEAEWGLSVVLDDE 462

Query: 484 -VQGF---APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR---- 535
             +GF   A  S+  +      S  + VG     R++        + LS  +KP++    
Sbjct: 463 ETRGFVHIANISDEHIPALSATSGAWKVGTKHDARVLGFYALDGLLRLS--LKPSQLERR 520

Query: 536 -VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 593
            V   D    G +V G ++ +T   V ++V   G   G +  + LAD  L+H    +   
Sbjct: 521 FVQTGDFTP-GEIVKGAIENLT--DVGMFVDVGGDISGRVALDQLADIELKHP---EKRF 574

Query: 594 KPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 652
           K G     ++L +D E   L L+ K SL++S   + +         V    V  ++ +G 
Sbjct: 575 KAGASVKCRILAVDPEHGRLTLTCKKSLLSSDLPIIAKLDDAKQGMVADAVVSKVLPSGA 634

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
            V   G + GF P  +A +G    + +    GQ+V+  +L VN+E G I  SL+Q+  S 
Sbjct: 635 LVMLYGGVKGFVPIREASEGYIKSVDEILKPGQAVKVKVLSVNTEEGNILASLRQAQPSY 694

Query: 713 TDAS 716
             A+
Sbjct: 695 QPAA 698



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 109/487 (22%), Positives = 204/487 (41%), Gaps = 77/487 (15%)

Query: 964  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1023
            G +HI  ++D+    +      +K+G    AR++            L  LS+KPS L   
Sbjct: 466  GFVHIANISDEHIPALSATSGAWKVGTKHDARVLGF-----YALDGLLRLSLKPSQL--- 517

Query: 1024 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1083
                +   +  D + G+ V G +  + +    + +   +  ++  LD   +  EL+  ++
Sbjct: 518  ---ERRFVQTGDFTPGEIVKGAIENLTDVGMFVDVGGDISGRV-ALDQLAD-IELKHPEK 572

Query: 1084 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1143
            RF  G +V   +L+++ E   L L  +      SD  +    D+ +    +G +    +S
Sbjct: 573  RFKAGASVKCRILAVDPEHGRLTLTCKKSLLS-SDLPIIAKLDDAK----QGMVADAVVS 627

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE----GQFVK 1199
            K+L   G LV+     LYG V       + + +   GY       +   DE    GQ VK
Sbjct: 628  KVLPS-GALVM-----LYGGVK----GFVPIREASEGY-------IKSVDEILKPGQAVK 670

Query: 1200 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1259
             KVL ++ T  G              ++S   +  S     PG     +ED++    V+ 
Sbjct: 671  VKVLSVN-TEEGNI------------LASLRQAQPSYQPAAPGV---DVEDIAVGSNVEA 714

Query: 1260 YVKNVTSKGCFIMLSRKLDAKVL----LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
             +K+V +    + +       +L    L+N  +  VE+       G +++  V+  +   
Sbjct: 715  EIKDVQAINVVLSIQPGGQTALLSLANLANRRNTTVEALRLSLVPGTVLSDLVVVSKNPE 774

Query: 1316 KRV---EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
            KR+    VTL  S++  +S + I+    LHVG I++GQ+   ++    + + +  L+G  
Sbjct: 775  KRIVILAVTLPGSNAGPSSSTAIS-WKTLHVGQILLGQVIGEKNGSTSVRL-SQYLIGRL 832

Query: 1373 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA---------- 1422
            H  +L+ D+++N     RAG  +KV ++ VD   R + L  + S    ++          
Sbjct: 833  HPLDLT-DNLENGIVFPRAGSALKVAVVGVDPHARTLDLSTRPSRLNPESHPPIVDPEIT 891

Query: 1423 --DNLQM 1427
              DNLQ+
Sbjct: 892  SLDNLQV 898


>gi|440791390|gb|ELR12628.1| S1 RNA binding domain containing protein [Acanthamoeba castellanii
            str. Neff]
          Length = 1936

 Score =  311 bits (797), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/266 (55%), Positives = 202/266 (75%), Gaps = 4/266 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P+T D++E+L+ +SPNSSF+WIKYMAF LS+A++++AR IAERAL+ IN REE EKLN+W
Sbjct: 1669 PKTADDYEKLLLASPNSSFLWIKYMAFQLSIAEIDRAREIAERALKRINFREEQEKLNVW 1728

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            VA  NLEN++G+   E++++VFQRAL Y DPK V+L L+G+YER+EQ KLA+EL   M K
Sbjct: 1729 VALMNLENKHGS--NESLMQVFQRALTYNDPKTVNLQLVGIYERSEQYKLAEELYKAMTK 1786

Query: 1664 KFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            KFKHS ++WLR  Q  LK     EG + V++RAL  LP+ KHI  IS+ A +EFK+G  +
Sbjct: 1787 KFKHSWQIWLRYSQFHLKNLHSIEGARKVLERALQVLPKKKHIGVISKMAQMEFKHGSPE 1846

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            RGR++FEGILS YPKR D+W IY+D E+ LGD   IR LFE+  +L L  KKM++ F++Y
Sbjct: 1847 RGRTIFEGILSNYPKRVDIWGIYIDMELALGDHGAIRNLFEKVTTLQLSSKKMRYFFERY 1906

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVES 1807
            L++EK  G +E + +V++KA +YV S
Sbjct: 1907 LKFEKEHGTKESVGHVREKARQYVLS 1932


>gi|340381756|ref|XP_003389387.1| PREDICTED: protein RRP5 homolog [Amphimedon queenslandica]
          Length = 1804

 Score =  311 bits (796), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 351/1364 (25%), Positives = 596/1364 (43%), Gaps = 138/1364 (10%)

Query: 1    MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--------NEIEA 52
            +Y +N+  G+ +   + EV +  L++ LP  + G     D  DP+           E +A
Sbjct: 117  LYHKNLKEGLLILCAIKEVQQYRLLMSLPFNMTGSVNIGDVSDPLSSLINTGGEGEEFDA 176

Query: 53   NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 112
             +   L  ++ VGQL+SC VL+++D +K++      LS+   L+   L+ + +   M+++
Sbjct: 177  KKVPDLSKMYRVGQLLSCYVLKVNDSEKQV-----QLSINPKLINNQLTAKNLIPNMIVS 231

Query: 113  AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSI---DRTRKVV 169
              V SIEDHGYI+ FG+   T FL    L +NSG +    L +  VV ++     T + +
Sbjct: 232  GCVTSIEDHGYIIDFGVSDRTEFL----LNKNSGSE---SLYIGQVVSTLILPGPTARAL 284

Query: 170  YLSSDPDTV-SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 228
             LS  PD + S  +++    +++  ++PG +++  V+      +++SFL  F G V   H
Sbjct: 285  PLSIAPDILYSSILSQSSSAVTLPSILPGQLLNVSVKQTTPTSLIVSFLGGFEGYVHYQH 344

Query: 229  LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-SHVKVGDIYD 287
            L    P T+   DY  +KK+ AR+L++D  ++ +GLTL   ++       S +++G I  
Sbjct: 345  LPT--PGTSL-TDYAINKKLKARVLWLDTNNKKIGLTLQNEIIKGTGYDFSGMEIGLILH 401

Query: 288  QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 347
            ++ V RV+   G++L +P+    + AY  +  +  E   K+ KK+  GS   VRI+ + +
Sbjct: 402  EAIVTRVESRHGVILKLPN---GSFAYSPVRLMYSERTDKISKKHCVGSVHSVRIVQYNY 458

Query: 348  LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 407
            ++GLA   +K +  E   FT +DV PG ++KG V  +   G  V     +   CPL  +S
Sbjct: 459  IDGLAIVSMKENTLEEEYFTINDVTPGSIIKGNVTKISDKGISVSINNRLNGFCPLSQLS 518

Query: 408  E-FEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            +   + K  KK   GA +  RVL V +    I +T KK++V   L  L+           
Sbjct: 519  DSAHLKKTLKKLSEGAAVKCRVLKVDTDNNFILLTKKKSIVSCDLPPLTDVRTVKPGEEY 578

Query: 465  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPA 521
             G I  I   G  +RFYN + GF P  EL          PS  + +GQV++ R++S    
Sbjct: 579  TGEIINIVDKGLIIRFYNNITGFLPNVELSSTSTQVILSPSQFFKIGQVLQTRVLSVDID 638

Query: 522  SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV-------VVYVIAKGYSKGTI 574
            + ++ LS   +    +E    + G L+   V  V  N V       ++++     S    
Sbjct: 639  NNKVRLSLRKQAPPTTESQ-AQPGDLLECEVTGVAGNGVSLLCNDELIFIPTPCLSDYAP 697

Query: 575  PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS-------AQQL 627
               HL  +       KS     Y    +LVL   +S   +S     I          ++ 
Sbjct: 698  LNGHLLAYHGRMLSDKSDRNEKYIISNVLVLSGATS---VSPAVGCIKKLIIDDLLKEKY 754

Query: 628  PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 687
            P     +H   V+ G V  I   G F+ F   L G AP     D    D +  Y   Q+V
Sbjct: 755  PKTFEELHVGMVLVGVVKRIYSYGVFIEFPNGLVGLAPLKYLSDEYITDTNGVYGERQTV 814

Query: 688  RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
             + + ++N     IT+SLK   CS    S      L++  +    ++     +L +  G 
Sbjct: 815  FAKVHELNEVRKNITISLK---CSDLKLSLTHSLPLVQSIVLKQFANLLKEKDLIFSNGV 871

Query: 748  II---GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 804
            +    G++++G+++  ++    V+ E      G+++     G  V  G  +   ++DV  
Sbjct: 872  VYYRPGTLVKGQINNISNSLFHVTLESGPSATGYVS--MATGGGVCPGDHVTCCVIDVDM 929

Query: 805  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH------QTVNAIVEIVKE 858
                  +SL +  +         ++ +K+K+ + AS D+  +       TV   +E +  
Sbjct: 930  ETGNYWVSLNSKVM-----KERGKEEEKQKKGKTASGDINSYFKLEAGHTVTGHIEYINN 984

Query: 859  NYLVLSLPEYNHSI---GYASVSDYNTQKFPQKQFLNGQSVIATVM---ALPSSSTAGRL 912
             YL+ S+   N S+   G      +    +  K    G  V  TV+   +L +   +G  
Sbjct: 985  YYLICSVSTLNQSVLAYGLFDSGQWGVIPYQLKHLKPGAKVNGTVLQSSSLFNGKMSGPP 1044

Query: 913  LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 972
            + LL    E+ + S K   ++ S  +G +V A+I +I   +L + FG  + GRIH T + 
Sbjct: 1045 IFLL---GESNSLSQKIVAQQLSVTIGDIVDAKIIKISDSQLSVSFG-PWKGRIHSTLLA 1100

Query: 973  DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFE 1032
            DD       L S F +G  + A+I+    +           S+KP  +       K LF+
Sbjct: 1101 DDMEKGSYPL-SKFSVGDVMKAKILKYRKRAGH--------SVKPGTVHFELTTRKSLFD 1151

Query: 1033 ------ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL---DSAYEPSELQEFQR 1083
                  E   + G +  G V +V     L+ I+  + A +  L    +  E   L +  +
Sbjct: 1152 AEKAKIESSFTTGDKRMGVVREVTKSRLLVDITPEVSAVICPLLAGSNVNEDGNLLKLTK 1211

Query: 1084 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1143
             F++G+ V   V                  D I       S       I+ GD V GR++
Sbjct: 1212 CFNVGEVVECTV-----------------GDCIEKGQYHGSLTGSLPVINIGDTVCGRVT 1254

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
             +     GLV+ I  +L G V+ T + +  V  PL  ++ G  D LS         C V 
Sbjct: 1255 DV--QYSGLVLSINHYLNGIVYLTNISDYYVPRPLQYFNIG--DKLS---------CVV- 1300

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +T +      LSLR S  G++   +     D   P K +  I DL    +V+GYV +
Sbjct: 1301 -IGKTSK---QFNLSLRKSHTGIN-IPTLPAQPDGSEPDKEINNIADLQEVGVVRGYVSS 1355

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            VT  G F+ L   +  +V+L NLSD YV++ E    +G LV  +
Sbjct: 1356 VTKYGIFVKLGPDVVGRVMLKNLSDQYVQNYESCVNVGDLVRAK 1399



 Score =  263 bits (672), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 180/573 (31%), Positives = 313/573 (54%), Gaps = 49/573 (8%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            V G V +V   G  + ++  L+  V L+N+SD YV  P + F IG  ++  V+     SK
Sbjct: 1249 VCGRVTDVQYSGLVLSINHYLNGIVYLTNISDYYVPRPLQYFNIGDKLSCVVIG--KTSK 1306

Query: 1317 RVEVTLKTSDSR------------TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
            +  ++L+ S +             +    EINN+++L    +V G +  V  YG+F+ + 
Sbjct: 1307 QFNLSLRKSHTGINIPTLPAQPDGSEPDKEINNIADLQEVGVVRGYVSSVTKYGIFVKL- 1365

Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1424
              ++VG   +  LS+ +V N E+    G+ V+ K+++ + ++            K  A  
Sbjct: 1366 GPDVVGRVMLKNLSDQYVQNYESCVNVGDLVRAKVVEFEVQEVEGVATKGKEKKKKYAIG 1425

Query: 1425 LQMS---------SEEESD----EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL 1471
            +            SE ESD    + IEE     + S+LE++    +   +E ++      
Sbjct: 1426 IDEEEEEEELVEMSEGESDTMDQQEIEE-----KESVLEDTKRLKKKRKLEDKE------ 1474

Query: 1472 AQIESRASVPPLEVNLD-DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE 1530
               E   S+ PL V    D  P  D    ++   T+E   I +K ++  KK  K+  E +
Sbjct: 1475 ---EDSCSMTPLPVTGGWDYNPSNDTIEERDDEDTNEV--ISKKKSKRQKKAIKKAEELQ 1529

Query: 1531 IRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            +   E  L++    P++ D+F+RL+ ++PNSS +W++YMAF L  A+V+KAR+ AER L 
Sbjct: 1530 LYKREHSLMDTSRLPQSADDFDRLLVANPNSSSLWLQYMAFYLHTAEVDKARATAERGLA 1589

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
             I+ REE+EKLN+WV + NLEN YG+   E++ +VF+RALQ  D  +++  L+ +Y  + 
Sbjct: 1590 AISFREEDEKLNLWVGFLNLENMYGD--SESLDQVFKRALQQNDQFEIYTRLIDIYVTSN 1647

Query: 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1708
            + + AD+L   M KKF  + +VW +  + L++Q + +  + ++QR+  SL + +H+    
Sbjct: 1648 KPEYADQLYQIMCKKFSSNIQVWSQYGRFLMEQGKADLARKILQRSFKSLTKKQHVDITK 1707

Query: 1709 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1768
            Q A  EFK G  +RG ++FE ++S YP++ D+WS+Y+D   + G++D +R +FERA+SL 
Sbjct: 1708 QFAQFEFKYGEMERGCTLFENLVSSYPRKVDIWSVYIDMLTKKGEMDRVRDVFERAVSLK 1767

Query: 1769 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1801
            L   K +FL+K+Y+E+E+  G +  +E V+ K+
Sbjct: 1768 LSSVKKQFLYKRYIEFERKHGTQSLVETVQAKS 1800



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
            LHVG +++G +KR+ SYG+FI   N  LVGL  +  LS++++ +   +Y   + V  K+ 
Sbjct: 761  LHVGMVLVGVVKRIYSYGVFIEFPN-GLVGLAPLKYLSDEYITDTNGVYGERQTVFAKVH 819

Query: 1401 KVDKEKRRISLGMKSSYFK 1419
            ++++ ++ I++ +K S  K
Sbjct: 820  ELNEVRKNITISLKCSDLK 838



 Score = 47.4 bits (111), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 166/412 (40%), Gaps = 73/412 (17%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII- 997
            G L+   + +  P  L + F  GF G +H   +    +++     +++ I + + AR++ 
Sbjct: 313  GQLLNVSVKQTTPTSLIVSFLGGFEGYVHYQHLPTPGTSL-----TDYAINKKLKARVLW 367

Query: 998  AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1057
              +N   +  +   E+ IK +    S +   L+  E  V+  +   G + K+ N      
Sbjct: 368  LDTNNKKIGLTLQNEI-IKGTGYDFSGMEIGLILHEAIVTRVESRHGVILKLPNG----- 421

Query: 1058 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA-VTGHVLSINKEKKLLRLVLRPFQDGI 1116
                          AY P  L   +R   I K    G V S+       R+V   + DG+
Sbjct: 422  ------------SFAYSPVRLMYSERTDKISKKHCVGSVHSV-------RIVQYNYIDGL 462

Query: 1117 SDKTVDISNDNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1172
            +  ++  +    + F    +  G I+ G ++KI     G+ V I   L G    ++L + 
Sbjct: 463  AIVSMKENTLEEEYFTINDVTPGSIIKGNVTKISDK--GISVSINNRLNGFCPLSQLSD- 519

Query: 1173 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1232
                  S + +     LS   EG  VKC+VL++       F +       L    S  S 
Sbjct: 520  ------SAHLKKTLKKLS---EGAAVKCRVLKVD--TDNNFIL-------LTKKKSIVSC 561

Query: 1233 DLS--TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA---KVLLSNLS 1287
            DL   TDV T          + P     G + N+  KG  I     +      V LS+ S
Sbjct: 562  DLPPLTDVRT----------VKPGEEYTGEIINIVDKGLIIRFYNNITGFLPNVELSSTS 611

Query: 1288 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL-KTSDSRTASQSEINNL 1338
               + SP + F IG+++  RVLSV+  + +V ++L K +   T SQ++  +L
Sbjct: 612  TQVILSPSQFFKIGQVLQTRVLSVDIDNNKVRLSLRKQAPPTTESQAQPGDL 663


>gi|345568479|gb|EGX51373.1| hypothetical protein AOL_s00054g443 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1795

 Score =  305 bits (782), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 244/901 (27%), Positives = 450/901 (49%), Gaps = 97/901 (10%)

Query: 941  LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN----LFSNFKIGQTVTARI 996
            + +  IT IKP ++ +       GR+ ++E   D  ++       L     +GQ +  ++
Sbjct: 930  ITKGRITAIKPTQINIDLADNVKGRVDVSEFFKDWDSIKNKKHPLLRQGLAVGQEIDVKV 989

Query: 997  IAKSNKPDMKKSFLWELSIKPS-MLTVSEIGSKL-------LFEECDVSIGQRVTGYVYK 1048
            I      D+K      +S + S  L   E+ +K        L +  D+   +    +V  
Sbjct: 990  IGIH---DVKSHKYLPISHRVSGKLPTFELSAKQVTGKANSLVKYSDLKKEETYLAFVNN 1046

Query: 1049 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1108
            V  +   + +S  ++ ++ +L+ + + S L + ++ + +G A+   VL +N +   L L 
Sbjct: 1047 VQQDHLWVNLSPSVRGRVKLLEISEDVSALSDLEKHYPVGTALRVSVLDVNVDTGKLDLT 1106

Query: 1109 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1168
             R       +K +D S+      I EG ++  +++KI  G   ++VQ+   + G      
Sbjct: 1107 ARYLG---GNKPLDWSS------IKEGMMIPAKVTKISEG--KVIVQLSETILG------ 1149

Query: 1169 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1228
              +I ++D    +D+     +  ++    V+  VL +  + +    + LS R S    SS
Sbjct: 1150 --SISLADMADDFDKAD---VKNFNTDSIVRVCVLSVDHSNK---KIRLSTRPSRILDSS 1201

Query: 1229 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1288
                D+          ++   DL      +G+V NV   G +I L     A+  +S+LSD
Sbjct: 1202 AKVRDV---------EVKSAADLRVGGKYRGFVTNVADNGVYIHLGGTAVARARISDLSD 1252

Query: 1289 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1348
             +V+  +K F + +LV G+++SV+  + ++ + LK S     ++  I +  +   G+ V 
Sbjct: 1253 EFVKDWKKGFTVHQLVKGKIMSVDLDTNQISINLKKSVLLGTAKKTIADYKD---GEFVD 1309

Query: 1349 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEK 1406
            G +++V  YG FI I+ + N+ GLCH S++S +  D +   ++  G+ VK KIL VD++K
Sbjct: 1310 GHVRKVTEYGCFIVIDGSDNVSGLCHKSQMSNEKADVDPSKLFGEGDLVKAKILSVDRKK 1369

Query: 1407 RRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSL------------LENSSV 1454
             RIS G+K+SYF+N  D   +  E   ++ I                       L+++S 
Sbjct: 1370 GRISFGLKASYFRNLPDEELVPKESTEEQLIISADEDEEMEDEEEEEEEEGGVKLDSAST 1429

Query: 1455 AVQDMDMESEDGGSLVLAQIESRASVPPLEVN-----LDDEQPDMDNGISQNQGHTDEAK 1509
            A   + +   D  S       S+ + P    +     +DD  PD     S+++G +    
Sbjct: 1430 AADGVTITGIDRPS---TSFFSKFNKPNWTADAAVSAMDDLFPDDAPSDSEDEGDS---- 1482

Query: 1510 TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMA 1569
            T  +K  ++A           I+      L+   P++  ++ERL+ + PN S +W+ YMA
Sbjct: 1483 TKKQKKKKNA-----------IKVDLTGDLDTRQPQSASDYERLLLADPNDSLLWMSYMA 1531

Query: 1570 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1629
            F+++  D+  AR+I+ERA++ I+ R+E+ KLN+W+A  NLE E+G P  E +   F+ A 
Sbjct: 1532 FLVANGDIVTARAISERAVKKIDHRKEDSKLNVWLARLNLELEFGTP--ETLEVAFKSAC 1589

Query: 1630 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQ 1688
            QY D KK+H  L+ +Y +T +++ ADEL   MIKKF    K+W+  +  ++ K + +  +
Sbjct: 1590 QYNDGKKIHQGLVSVYIQTGKHEQADELFQSMIKKFSQDEKIWINYMTYMMEKNRGDDAR 1649

Query: 1689 AVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1747
             ++ RAL ++   K H     + A LE+K+G  ++GR++FE +LS YPKR D+W++Y+D 
Sbjct: 1650 IMLSRALQAIQDTKVHPGLTLKFAQLEYKSGEIEKGRTLFEKLLSAYPKRLDIWNVYIDI 1709

Query: 1748 EIRL-GDVDLIRGLFERAISLS-LPPKKMKFLFKKYLEYEK--SVGEEERIEYVKQKAME 1803
            E +  G +D++R LF R ++   L  KK   +F K++E E+  + G+++R ++V  +A+E
Sbjct: 1710 EAKQEGGIDVVRRLFPRVLATGKLNAKKANGVFNKWMELEEKFAPGDKKRKDHVIAQAVE 1769

Query: 1804 Y 1804
            Y
Sbjct: 1770 Y 1770



 Score =  212 bits (540), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 213/752 (28%), Positives = 350/752 (46%), Gaps = 63/752 (8%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL-------- 57
           G  ++G ++++ +KD+ I LP  L G   L   ++     L   +E +ED +        
Sbjct: 143 GQLVFGFISKITKKDVAIALPNNLVGYAPLTSISEQYTNQLQASLEQDEDGMDIDKDNAE 202

Query: 58  --------LPTIFHVGQLVSCIVLQLDDDKKEIGKRK----IWLSLRLSLLYKGLSLETV 105
                   L  +F V Q V   V+ +       G++K    I LSL  +L   G++   +
Sbjct: 203 ETEAEIPGLDMLFEVNQPVRAYVMNVSTGGTGSGEKKQRKHIELSLLPTLTNPGITKTEI 262

Query: 106 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT 165
            +G+ L A VKSIED+G+I+  GL   +GF+ +++        +K G      V  +   
Sbjct: 263 VKGITLQASVKSIEDNGFIMDLGLDFVSGFMGKSDCGAPPNT-IKVGRTFLCHVLGLASG 321

Query: 166 RKVVYLSSD-PDTVSKCVTKDLK---GISIDLLVPGMMVSTR-VQSILENGVMLSFLTYF 220
            KVV L+SD   ++     KD     G +ID  +PG M S   V  + +NG++ + +   
Sbjct: 322 GKVVQLASDFHKSIKGKSGKDAAVGDGPTIDCFLPGTMASKALVTDVQDNGLVCTVMGSI 381

Query: 221 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS---RAVG--LT----LNPYLL 271
             TVD+FH    F +   +  Y     +  R+L   P S   +  G  LT    + P   
Sbjct: 382 DVTVDLFH-SGCFSSEVLQTKYKAGNHLTVRLLASIPGSDNKKFAGSLLTHVKEMGPQTQ 440

Query: 272 HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL--E 329
             +   S + +G I   + V  +  G+GL+L+I     +T  +V IS ++++++  +   
Sbjct: 441 SGKLALSKLPIGAIKSDAAVKHIIPGVGLILNIGLG--NTMVFVHISRISDKKIDSILTT 498

Query: 330 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 389
             YK GS   +RIL +  ++GL    ++            DVKPG VVKGK+      G 
Sbjct: 499 GPYKVGSKHAIRILDYNSMDGLLLASMEPKILSQRYLRMEDVKPGDVVKGKISRFVGGGM 558

Query: 390 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS 447
           +V+   G++A  P  HMS+  +  P KKF+ GA +  R+L V   S+RI +T KK +V S
Sbjct: 559 LVEVEEGLEAYVPEMHMSDIVLQHPEKKFREGAAVKGRILRVDTDSRRIKMTLKKAIVNS 618

Query: 448 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 507
           +  + + Y +  +   T G I K+   G  + FY  V+GF P SE+      +P   + V
Sbjct: 619 EGPVFADYIDVEEDEETPGTIVKLMPTGAILEFYGEVRGFLPVSEMSEAFIKDPMEHFKV 678

Query: 508 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-----VKLGSLVSGVVDVVTPNAVVV 562
           GQ +   ++SS P  +++ LS        S++       + LGS+V G + +   N  VV
Sbjct: 679 GQTLNVHVISSDPMEKKVRLSCRSSQADSSKEKAEALQNIALGSIVEGSI-IEKSNDDVV 737

Query: 563 YVIAKGYSKGTIPTEHLADHLEH---ATVMKSVIKPGYEFDQLLVL-DNESSNLL-LSAK 617
             +  G  KG I    L D  +    AT  K  ++ G +   L+VL  +E  N++ LS+K
Sbjct: 738 LSLQDGI-KGLIVLGQLTDGSKEKNLATFKK--LRAGQKLVDLVVLRKDEMRNIVYLSSK 794

Query: 618 YSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 675
            SL+ +++   L      +   S V G+V  I   G FV F+  +T   PR KA+  +  
Sbjct: 795 PSLVKASKSDTLIKSFLDVKIGSAVAGFVKEITHFGVFVAFIDGITALLPR-KALPKEVE 853

Query: 676 DLSK-TYYVGQSVRSNILDVNSETGRITLSLK 706
           DL    Y+  QS+   + D+     + TLSL+
Sbjct: 854 DLPDFGYHRLQSITCYVTDIIPSREQFTLSLR 885



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 24/235 (10%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            ++ED+ P  +V+G +      G  + +   L+A V   ++SD  ++ PEK+F  G  V G
Sbjct: 536  RMEDVKPGDVVKGKISRFVGGGMLVEVEEGLEAYVPEMHMSDIVLQHPEKKFREGAAVKG 595

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            R+L V+  S+R+++TLK    +    SE     +  ++   +   G I ++   G  +  
Sbjct: 596  RILRVDTDSRRIKMTLK----KAIVNSEGPVFADYIDVEEDEETPGTIVKLMPTGAILEF 651

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
                + G   VSE+SE  + +    ++ G+ + V ++  D  ++++ L  +SS       
Sbjct: 652  YG-EVRGFLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVRLSCRSS------- 703

Query: 1424 NLQMSSEEESDEAIEEV--GSYNRSSLLENSSVAVQDMDMESEDG--GSLVLAQI 1474
              Q  S +E  EA++ +  GS    S++E S+    D+ +  +DG  G +VL Q+
Sbjct: 704  --QADSSKEKAEALQNIALGSIVEGSIIEKSN---DDVVLSLQDGIKGLIVLGQL 753



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/352 (19%), Positives = 151/352 (42%), Gaps = 17/352 (4%)

Query: 196 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 255
           PG +V  ++   +  G+++         V   H+ +     + +  + +   V  RIL V
Sbjct: 542 PGDVVKGKISRFVGGGMLVEVEEGLEAYVPEMHMSDIV-LQHPEKKFREGAAVKGRILRV 600

Query: 256 DPTSRAVGLTLNPYLLHNRAP--PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 313
           D  SR + +TL   ++++  P    ++ V +  +    +      G +L+          
Sbjct: 601 DTDSRRIKMTLKKAIVNSEGPVFADYIDVEEDEETPGTIVKLMPTGAILEFYG---EVRG 657

Query: 314 YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG---LATGILKASAFEGLVFTHSD 370
           ++ +S+++E  ++   + +K G  + V ++    +E    L+    +A + +       +
Sbjct: 658 FLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVRLSCRSSQADSSKEKAEALQN 717

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK---PGKKFKVGAELVFR 427
           +  G +V+G +I   +   ++    G+K L  L  +++    K     KK + G +LV  
Sbjct: 718 IALGSIVEGSIIEKSNDDVVLSLQDGIKGLIVLGQLTDGSKEKNLATFKKLRAGQKLVDL 777

Query: 428 VLGVKSKR---ITVTHKKTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGCFVRFYN 482
           V+  K +    + ++ K +LVK+  +  ++ S+ +        G++ +I   G FV F +
Sbjct: 778 VVLRKDEMRNIVYLSSKPSLVKASKSDTLIKSFLDVKIGSAVAGFVKEITHFGVFVAFID 837

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
           G+    PR  L  +    P   YH  Q + C +   IP+  +  LS   +PT
Sbjct: 838 GITALLPRKALPKEVEDLPDFGYHRLQSITCYVTDIIPSREQFTLSLRPQPT 889



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 143/295 (48%), Gaps = 42/295 (14%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            +  GD+V G+IS+ + G  G++V++   L   V    + +I +  P     E +F     
Sbjct: 540  VKPGDVVKGKISRFVGG--GMLVEVEEGLEAYVPEMHMSDIVLQHP-----EKKFR---- 588

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSL---DGMSSTNSSDLSTDVDTPGKHLEKI 1248
              EG  VK ++L +    R    ++++L+ ++   +G    +  D+  D +TPG     I
Sbjct: 589  --EGAAVKGRILRVDTDSR---RIKMTLKKAIVNSEGPVFADYIDVEEDEETPGT----I 639

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L P              G  +    ++   + +S +S+ +++ P + F +G+ +   V
Sbjct: 640  VKLMPT-------------GAILEFYGEVRGFLPVSEMSEAFIKDPMEHFKVGQTLNVHV 686

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
            +S +P+ K+V ++ ++S +  +S+ +   L N+ +G IV G I    +  + +++++  +
Sbjct: 687  ISSDPMEKKVRLSCRSSQA-DSSKEKAEALQNIALGSIVEGSIIEKSNDDVVLSLQD-GI 744

Query: 1369 VGLCHVSELSEDHVD-NIETI--YRAGEK-VKVKILKVDKEKRRISLGMKSSYFK 1419
             GL  + +L++   + N+ T    RAG+K V + +L+ D+ +  + L  K S  K
Sbjct: 745  KGLIVLGQLTDGSKEKNLATFKKLRAGQKLVDLVVLRKDEMRNIVYLSSKPSLVK 799



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 120/274 (43%), Gaps = 40/274 (14%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGY 597
           VK G +V G +       ++V V  +G  +  +P  H++D    H E      + +K   
Sbjct: 540 VKPGDVVKGKISRFVGGGMLVEV-EEGL-EAYVPEMHMSDIVLQHPEKKFREGAAVK--- 594

Query: 598 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 657
              ++L +D +S  + ++ K +++NS   + +D   +  +    G +  ++ TG  + F 
Sbjct: 595 --GRILRVDTDSRRIKMTLKKAIVNSEGPVFADYIDVEEDEETPGTIVKLMPTGAILEFY 652

Query: 658 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 717
           G + GF P S+  +    D  + + VGQ++  +++  +    ++ LS + S   S+    
Sbjct: 653 GEVRGFLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVRLSCRSSQADSS---- 708

Query: 718 MQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG 777
                  +EK   LQ+               +GS++EG + E ++  VV+S ++   + G
Sbjct: 709 -------KEKAEALQN-------------IALGSIVEGSIIEKSNDDVVLSLQDG--IKG 746

Query: 778 FITHHQLAGATVESGSVIQAAILDVAKAERLVDL 811
            I   QL   + E      A    +   ++LVDL
Sbjct: 747 LIVLGQLTDGSKEKN---LATFKKLRAGQKLVDL 777



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 53/263 (20%), Positives = 104/263 (39%), Gaps = 48/263 (18%)

Query: 572  GTIPTEHLADHLEHATV----MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL 627
            G+I    +AD  + A V      S+++       +L +D+ +  + LS + S I  +   
Sbjct: 1149 GSISLADMADDFDKADVKNFNTDSIVRVC-----VLSVDHSNKKIRLSTRPSRILDSSAK 1203

Query: 628  PSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 682
              D     A+ +       G+V N+ + G ++   G     A  S   D    D  K + 
Sbjct: 1204 VRDVEVKSAADLRVGGKYRGFVTNVADNGVYIHLGGTAVARARISDLSDEFVKDWKKGFT 1263

Query: 683  VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 742
            V Q V+  I+ V+ +T +I+++LK+S              LL             G+  K
Sbjct: 1264 VHQLVKGKIMSVDLDTNQISINLKKSV-------------LL-------------GTAKK 1297

Query: 743  WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSV 794
             +  +  G  ++G V +  ++G  +  +   +V G     Q++    +         G +
Sbjct: 1298 TIADYKDGEFVDGHVRKVTEYGCFIVIDGSDNVSGLCHKSQMSNEKADVDPSKLFGEGDL 1357

Query: 795  IQAAILDVAKAERLVDLSLKTVF 817
            ++A IL V + +  +   LK  +
Sbjct: 1358 VKAKILSVDRKKGRISFGLKASY 1380



 Score = 45.1 bits (105), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 17/311 (5%)

Query: 62   FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 121
            + VG  +   VL ++ D       K+ L+ R     K L   +++EGM++ A V  I + 
Sbjct: 1083 YPVGTALRVSVLDVNVDTG-----KLDLTARYLGGNKPLDWSSIKEGMMIPAKVTKISEG 1137

Query: 122  GYILHFGLPSFTGFLPRNNLAEN-SGIDVK---PGLLLQGVVRSIDRTRKVVYLSSDPDT 177
              I+     +  G +   ++A++    DVK      +++  V S+D + K + LS+ P  
Sbjct: 1138 KVIVQLS-ETILGSISLADMADDFDKADVKNFNTDSIVRVCVLSVDHSNKKIRLSTRPSR 1196

Query: 178  V--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
            +  S    +D++  S   L  G      V ++ +NGV +           I  L + F  
Sbjct: 1197 ILDSSAKVRDVEVKSAADLRVGGKYRGFVTNVADNGVYIHLGGTAVARARISDLSDEF-V 1255

Query: 236  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS--HVKVGDIYDQSKVVR 293
             +WK  +  H+ V  +I+ VD  +  + + L   +L   A  +    K G+  D      
Sbjct: 1256 KDWKKGFTVHQLVKGKIMSVDLDTNQISINLKKSVLLGTAKKTIADYKDGEFVDGHVRKV 1315

Query: 294  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 353
             + G  +++D  S  VS   + +     + +V    K + EG  V+ +IL     +G  +
Sbjct: 1316 TEYGCFIVID-GSDNVSGLCHKSQMSNEKADVDP-SKLFGEGDLVKAKILSVDRKKGRIS 1373

Query: 354  GILKASAFEGL 364
              LKAS F  L
Sbjct: 1374 FGLKASYFRNL 1384


>gi|225680123|gb|EEH18407.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb03]
          Length = 1175

 Score =  305 bits (782), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 297/1100 (27%), Positives = 523/1100 (47%), Gaps = 130/1100 (11%)

Query: 601  QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
            ++L ++ E   L L+ K SL+NS      + S I P +   G + +I   G  V+F G +
Sbjct: 24   RILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQSPGTIISIHPHGAIVQFYGEV 83

Query: 661  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
             GF P S+  +    D S+ + VGQ V  + L V++E  ++ +S K     ST     + 
Sbjct: 84   RGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAEVRKLVVSCKDP---STSTETYKN 140

Query: 721  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 780
             F                      E    G ++   V E +   +++  E    V     
Sbjct: 141  AF----------------------ENIQPGDLVSCTVFEKSKEVILLRLEGSGLVARLNA 178

Query: 781  HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF-IDRFREANSNRQAQKKKRKREA 839
             H   G + + GS + A I    K   LV LS++ V  + +     S +QA+++      
Sbjct: 179  EHVTDGQSSKHGSAL-ACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAK 237

Query: 840  SKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIA 898
             +DL     V   V+ I+ +   V  L      +    + D +  K P   +   Q++ +
Sbjct: 238  FEDLQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAK-PDFGYTLSQTISS 296

Query: 899  TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS---------------SYD---VGS 940
             V ++       R  L +K    ++   S  A+  S               S+D    G 
Sbjct: 297  FVHSIEDDRQ--RFTLSMKENQTSKQRVSDNARPASNANQASINPVDGDIKSFDDLTFGR 354

Query: 941  LVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARII- 997
            + +A+I  +K  ++ ++      GRI ++E+ D  D     +     FK  Q +  RII 
Sbjct: 355  ITKAKIVSVKETQINVQLADNIQGRIDVSEIFDGWDAIKDRKQPLRYFKPKQIIPVRIIG 414

Query: 998  ---AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1049
               A+S+K  P   +S    ++ELS KPS L   +I    L     V IG    G+V  +
Sbjct: 415  IHDARSHKFLPISHRSGKYPVFELSAKPSSLESKDIE---LLSLDKVEIGSSWLGFVNNI 471

Query: 1050 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1109
             ++   + I+ +++ +L I D + + S + + ++ F +G A+  HV  +N +K  L L  
Sbjct: 472  GDDCLWINITPNVRGRLRITDVSDDLSLVGDVKKNFPVGSAIKVHVTGVNVDKNRLDL-- 529

Query: 1110 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1169
                   S K  D  N    +   +G+I+ GR++K+      ++VQ+     G ++  ++
Sbjct: 530  -------SAKHGDPLNKRTISDFSKGEILLGRVTKVSDR--QVLVQLSDTTVGAINLIDM 580

Query: 1170 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1229
             +          D  +  P + + + + ++  +L++    +    + LS+R S       
Sbjct: 581  AD----------DYTKVIP-ANFHKNEVLRVCILDVDVPNK---KILLSVRPS------- 619

Query: 1230 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1289
                LS+ +      ++ I  L  N IV+G+V+ V + G F+ L  ++ A V +S+LSD 
Sbjct: 620  --RVLSSSLPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLSDS 677

Query: 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1349
            Y++  + EF + +LV GR++ V+  + +++++LK S      ++ I  + +L+ G IV G
Sbjct: 678  YLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAPIT-IRDLNRGQIVTG 736

Query: 1350 QIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1408
            +++ VE +G FI I+ T NL GLCH +E++E  V++   ++  G+ VK KILK+D +K R
Sbjct: 737  KVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHDKER 796

Query: 1409 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGS 1468
            ISLG+K+SYFK         S+++SD    E G  N  S+ EN      +++ ES+D  S
Sbjct: 797  ISLGLKASYFK--------ESDDKSDGENSEDG--NEQSVSENEDDGELELEFESDDDVS 846

Query: 1469 LVLAQIESRASVPPLEVNLDDEQPDM----DNGIS----------QNQGHT--DEAKTID 1512
            +    +         E N+ DE   M    D G++             G T  DEA    
Sbjct: 847  MGGVDLGGGDGS---ESNVSDEDVQMAGTEDTGVTGGLVTSGFDWNGSGTTGADEANDSG 903

Query: 1513 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1572
              ++  A  K+K+ R+ EI+      L+   P++  ++ERL+   P+SS +W+KYMAF L
Sbjct: 904  SSSDGQAVPKKKKRRKPEIQVDRTGDLDAHGPQSIADYERLLLGEPDSSLLWLKYMAFQL 963

Query: 1573 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1632
             +++V+KAR IAERAL++I I ++ EK NIW+A  NLEN +GN  ++++  VF+RA QY 
Sbjct: 964  ELSEVDKAREIAERALRSIRIGQDAEKFNIWIAMLNLENIFGN--DDSLEDVFKRACQYN 1021

Query: 1633 DPKKVHLALLGLYERTEQNK 1652
            DP+++H  +  +Y ++ +N+
Sbjct: 1022 DPQEIHERMTSIYIQSGKNE 1041



 Score =  110 bits (274), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 159/320 (49%), Gaps = 16/320 (5%)

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL 462
           H+S+ ++  P +KF+ GA++  R+L V  + +++ +T KK+L+ S+      Y++     
Sbjct: 2   HLSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGN 61

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
            + G I  I  HG  V+FY  V+GF P SE+      +PS  + VGQVV    ++     
Sbjct: 62  QSPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAEV 121

Query: 523 RRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R++ +S    P+  +E      + ++ G LVS  V   +   +++ +   G     +  E
Sbjct: 122 RKLVVS-CKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEGSGLV-ARLNAE 179

Query: 578 HLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDA 631
           H+ D    +H + + + I+ G +   L++L  +  + L+  S K SL  + Q  +LP+  
Sbjct: 180 HVTDGQSSKHGSAL-ACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKF 238

Query: 632 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
             +   S V G+V NII  G FV FL  LTGF P+    D   A     Y + Q++ S +
Sbjct: 239 EDLQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFV 298

Query: 692 LDVNSETGRITLSLKQSCCS 711
             +  +  R TLS+K++  S
Sbjct: 299 HSIEDDRQRFTLSMKENQTS 318



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 320 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF--EGLVFT-HSDVKPGMV 376
           +++ +++  E+K++EG+ V  RIL     +      LK S    E   +  +SD+ PG  
Sbjct: 3   LSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQ 62

Query: 377 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 434
             G +I++   GAIVQF G V+   P+  MSE  I  P + F VG  +    L V ++
Sbjct: 63  SPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAE 120



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 145/397 (36%), Gaps = 112/397 (28%)

Query: 1076 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG 1135
            ++LQ  +R+F  G  V+  +LS+N EK+ LRL L+            + N     +    
Sbjct: 6    TKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKK----------SLLNSESPAWKEYS 55

Query: 1136 DIVGGRISKILSGVGGLVVQIGPH-----LYGRVH----FTELKNICVSDPLSGYDEGQF 1186
            DI+ G  S       G ++ I PH      YG V      +E+    + DP   +  GQ 
Sbjct: 56   DILPGNQSP------GTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQV 109

Query: 1187 --------------------DPLSGYDE----------GQFVKCKVLEISRTV-----RG 1211
                                DP +  +           G  V C V E S+ V      G
Sbjct: 110  VNVHALTVHAEVRKLVVSCKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEG 169

Query: 1212 TFHV-ELSLRSSLDGMSSTNSSDLST-------------------------------DVD 1239
            +  V  L+     DG SS + S L+                                   
Sbjct: 170  SGLVARLNAEHVTDGQSSKHGSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQAR 229

Query: 1240 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1299
              G+   K EDL     V G+VKN+ + G F+   R L   +    + D +V  P+  + 
Sbjct: 230  QRGELPAKFEDLQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYT 289

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLK---TSDSR---------TASQSEIN-------NLSN 1340
            + + ++  V S+E   +R  +++K   TS  R          A+Q+ IN       +  +
Sbjct: 290  LSQTISSFVHSIEDDRQRFTLSMKENQTSKQRVSDNARPASNANQASINPVDGDIKSFDD 349

Query: 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1377
            L  G I   +I  V+   + + + + N+ G   VSE+
Sbjct: 350  LTFGRITKAKIVSVKETQINVQLAD-NIQGRIDVSEI 385



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 166/385 (43%), Gaps = 51/385 (13%)

Query: 100 LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKPGLLLQG 157
           LSL+ V+ G     +V +I D    ++   P+  G L   +++++  +  DVK    +  
Sbjct: 453 LSLDKVEIGSSWLGFVNNIGDDCLWINI-TPNVRGRLRITDVSDDLSLVGDVKKNFPVGS 511

Query: 158 VVR------SIDRTR-KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 210
            ++      ++D+ R  +     DP          L   +I     G ++  RV  + + 
Sbjct: 512 AIKVHVTGVNVDKNRLDLSAKHGDP----------LNKRTISDFSKGEILLGRVTKVSDR 561

Query: 211 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 270
            V++       G +++  + + + T     ++++++ +   IL VD  ++ + L++ P  
Sbjct: 562 QVLVQLSDTTVGAINLIDMADDY-TKVIPANFHKNEVLRVCILDVDVPNKKILLSVRPSR 620

Query: 271 LHNRAPP---------SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDV 320
           + + + P         S +KV DI  +  V RV + GL + L    T     AYV ISD+
Sbjct: 621 VLSSSLPIEDPEIKSISQLKVNDIV-RGFVRRVANNGLFVTLGHEVT-----AYVRISDL 674

Query: 321 AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVV 377
           ++  ++  + +++    V  RI+            LK S  E       T  D+  G +V
Sbjct: 675 SDSYLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAPITIRDLNRGQIV 734

Query: 378 KGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
            GKV +V+ FGA +   G   +  LC    M+E ++    K F+ G         VK+K 
Sbjct: 735 TGKVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQKVEDARKLFEKGDI-------VKAKI 787

Query: 436 ITVTHKKTLVKSKLAILSSYAEATD 460
           + + H K  +   L + +SY + +D
Sbjct: 788 LKIDHDKERI--SLGLKASYFKESD 810



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 11/149 (7%)

Query: 1285 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLH 1342
            +LSD  ++ PE++F  G  V+ R+LSV    +++ +TLK S  +S + +  E    S++ 
Sbjct: 2    HLSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKE---YSDIL 58

Query: 1343 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1402
             G+   G I  +  +G  +      + G   VSE+SE ++ +    +  G+ V V  L V
Sbjct: 59   PGNQSPGTIISIHPHGAIVQFYG-EVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTV 117

Query: 1403 DKEKRRISLGMK-----SSYFKNDADNLQ 1426
              E R++ +  K     +  +KN  +N+Q
Sbjct: 118  HAEVRKLVVSCKDPSTSTETYKNAFENIQ 146



 Score = 42.0 bits (97), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 136/319 (42%), Gaps = 29/319 (9%)

Query: 242 YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 301
           + +  +V+ARIL V+   R + LTL   LL++ +P          + S ++  ++  G +
Sbjct: 15  FREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPA-------WKEYSDILPGNQSPGTI 67

Query: 302 LDI-PSTPV-----STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG---LA 352
           + I P   +         ++ +S+++E  ++   + +  G  V V  L   H E    + 
Sbjct: 68  ISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTV-HAEVRKLVV 126

Query: 353 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEI 411
           +    +++ E       +++PG +V   V        +++  G G+ A     H+++ + 
Sbjct: 127 SCKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEGSGLVARLNAEHVTDGQS 186

Query: 412 VKPGKKF---KVGA---ELVFRVLGVKSKRITVTHKKTL--VKSKLAILSSYAEATDRLI 463
            K G      +VG    +LV   +    + I V++K +L   + +  + + + +  +   
Sbjct: 187 SKHGSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKFEDLQEGSK 246

Query: 464 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 523
             G++  I   G FV F  G+ GF P+  +  D   +P   Y + Q +   + S     +
Sbjct: 247 VTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFVHSIEDDRQ 306

Query: 524 RINLSFMMKPT---RVSED 539
           R  LS     T   RVS++
Sbjct: 307 RFTLSMKENQTSKQRVSDN 325


>gi|451995534|gb|EMD88002.1| hypothetical protein COCHEDRAFT_1183202 [Cochliobolus heterostrophus
            C5]
          Length = 1784

 Score =  303 bits (777), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 239/895 (26%), Positives = 454/895 (50%), Gaps = 89/895 (9%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 996
            G+L+   +  +K  +L ++      GRI ++E+ ++  ++ +     ++FK+  T+ AR+
Sbjct: 927  GTLMTVRVRSVKDTQLNVELAANVPGRISVSELFENWDSIPDKKRPTAHFKMNDTIQARV 986

Query: 997  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV------SIGQRVTGYVYK 1048
            + + +  + +  FL   S   +  T  E+ +K   +  E DV      + G     ++  
Sbjct: 987  LGRHDPRNFR--FLPITSRSSNKTTTYEMTAKTEEIKSEADVLSLDKVTTGSSYIAFINN 1044

Query: 1049 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1108
            + +    + IS +++ ++   D   +  +L + ++ F +G A+   V +++     L L 
Sbjct: 1045 IADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGSALKVRVKAVDAVNGKLDLT 1104

Query: 1109 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1168
                   ++ K++ + +      +  G ++  R++K+      +VVQI   +   +   +
Sbjct: 1105 A---ASTVTGKSLSLQD------LKVGHVLPARVTKLHDA--SIVVQINESIAAPIFMEQ 1153

Query: 1169 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1228
            L +         YD+ Q           FV   VL +         +++ + +   G+S+
Sbjct: 1154 LAD--------DYDKAQ--------PKNFVVGDVLRVCV-------IDIDIPNKKLGLSA 1190

Query: 1229 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1288
              S  LS+ +      +     L  N +V+G+VK++ + G ++ L   ++A V +S+LSD
Sbjct: 1191 RPSRVLSSSLPVKDPEITDRAQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSD 1250

Query: 1289 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1348
             Y++  +  F + +LV G+V+S +   +  +++LKTS  +T    E  + +NL +G IV 
Sbjct: 1251 EYIKDWKSAFHVDQLVTGKVISNKDDQRNPQLSLKTSVIKT-DYVEPLDFANLKIGQIVT 1309

Query: 1349 GQIKRVESYGLFITIENTNLV-GLCHVSELSEDHVDN--IETIYRAGEKVKVKILKVDKE 1405
             +++ VE YG+F+ ++N+N V GLCH+S++++  VD   ++ +Y+  + VK K++KVD +
Sbjct: 1310 AKVRHVEDYGVFLIVDNSNNVSGLCHISQIADALVDKEKLKDMYKKDDVVKAKVIKVDPK 1369

Query: 1406 KRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES-- 1463
             R++S  +K S  K+  ++ +M  E+ SD    E G  +    L++      D+DM S  
Sbjct: 1370 SRKVSFTLKYSQVKDQGEDEEM--EDASDVEQSEDGYSDGGIELDD------DVDMRSVK 1421

Query: 1464 --EDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKK 1521
              E    + LA  +S       + + +DE      G+S + G      T+D    + A +
Sbjct: 1422 SAESDDDIELADADSS------DESDNDESKATAKGLSTS-GFDWTGATLDFDQQKGAAE 1474

Query: 1522 KEKEEREQEIRAA-------EERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFML 1572
             E E+   + +         E+R  + DA  P++  ++ERL+   PNS+ +W++YM F  
Sbjct: 1475 SESEDDAPKKKKKSKKATIKEDRTGDLDAYGPQSVADYERLLLGQPNSAELWVRYMVFQR 1534

Query: 1573 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1632
             + ++EKAR IA RAL TIN REE EKL++W A  +LEN++ +  ++A+  VF+ A Q  
Sbjct: 1535 EVNEIEKARQIARRALATINPREEKEKLDVWTALLHLENDFSS--DDAINAVFKEACQNN 1592

Query: 1633 DPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQQQEG---- 1686
            D +++H  ++ +Y  + +   ADEL   M+K   F    K WL     L+   Q      
Sbjct: 1593 DEREIHERMIKIYISSGKIDKADELYQSMMKNKSFTADPKFWLSYAAFLMDVIQPPSPAR 1652

Query: 1687 VQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIY 1744
             +A++QRA  S+   +H     + A LEFK  NG  +RGR++FEG++  + K+ D+W +Y
Sbjct: 1653 ARALLQRATQSVAAAQHRYLTQKFAALEFKSPNGDTERGRTIFEGLVDTFAKKGDVWDMY 1712

Query: 1745 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1799
            L  E   G+ D +R LFER   +     +++ +FKK+ E+E SVG ++ +E VK+
Sbjct: 1713 LMLEQSHGEADKVRDLFERMTKVG-KSSRIRGVFKKWAEWENSVGNKKGVEKVKK 1766



 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 202/748 (27%), Positives = 337/748 (45%), Gaps = 66/748 (8%)

Query: 16  VAEVNEKDLVICLPGGLRG---LARAADALDPIL---------DNEIEANEDNL----LP 59
           + +++ +DLV+ LP  L G   L   +D L+  L         D E  +++D+     L 
Sbjct: 150 ITDISHQDLVLALPNNLVGYVPLTAVSDKLNERLEKLLKEDESDKEEGSDKDDFEDVDLK 209

Query: 60  TIFHVGQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 118
            +F VGQ L +CI     +  K   ++++ LS+   L+  GL+   +    ++ A V S 
Sbjct: 210 DLFSVGQYLRACITATSSEGAK--ARKRLELSIEPKLVNTGLTKRKIPVNGMIQASVVSN 267

Query: 119 EDHGYILHFGLPSFT--GFLPRNNLAENS-GIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 175
           EDHG ++  GL   T  GFLP+  L  N     V+ G +   ++  ++   ++V LS+D 
Sbjct: 268 EDHGLVMDLGLNDATLKGFLPKGELGPNLLHSKVQEGAVFMCLITGLNSDGRIVKLSAD- 326

Query: 176 DTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 232
            T +  +TK     +  +ID+ +PG  V   V     N +    L     T D +H   T
Sbjct: 327 HTKAGNLTKGNTLTEAPTIDVFLPGTAVDLLVTENTPNTITGKILGLIDATADAYHSGAT 386

Query: 233 FPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL----------HNRAPP-SH 279
              T+    +    KV AR+LF  P S  R VG++L  ++L            R PP   
Sbjct: 387 EKATDMSQKHKIGSKVKARVLFTCPGSDPRKVGVSLLDHVLSLSTRMSGKPKERKPPIDL 446

Query: 280 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGS 336
           + +  I + +KVV+V    G   D+    V    +  IS +++++V  L ++   +K  S
Sbjct: 447 LPISTIVESAKVVKVAPSQGAFFDLGIKDVV--GFAHISRLSDDKVDILSEEAGAFKLDS 504

Query: 337 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IV 391
             + RI+G+  L+GL    L+    +       D+K G VVKGKV  +  D  GA   +V
Sbjct: 505 KHKARIVGYNALDGLFQLSLEKKVIDQPFLRIEDIKAGEVVKGKVHKLFADKTGATAVLV 564

Query: 392 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKL 449
               G+  L P  H+++  +  P +KF+ G  +  RVL  +  R  I +T KK+LV S++
Sbjct: 565 HLSDGITGLVPEMHLADVRLQHPERKFREGLPVTARVLYTEPARHQIHLTLKKSLVNSEV 624

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
              ++Y   ++     G + ++ ++G  V+FYN V+ + P +E+      + +  +H GQ
Sbjct: 625 KPWTNYDMISEGATGPGILVRVRRNGATVQFYNRVRAWLPVAEMSEAFIHDATRHFHAGQ 684

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYV 564
           VV  R++ S+ A  R  L     P  V  +     + +  G +V G V V   +      
Sbjct: 685 VVNVRVL-SVDAKERQLLVSCKDPAAVDTNKEAAFNALNPGGIVKGTV-VEKSDESATLD 742

Query: 565 IAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSL 620
           I  G  KG +   HL D  E   +  MK  I+ G   + L++L    +S    +S K SL
Sbjct: 743 IGNGV-KGILRLGHLTDGSEKKDISTMKK-IRVGGTLEDLVILTKHGKSKTATVSNKPSL 800

Query: 621 INSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 678
              AQ  +L      +     VHG+V  I+    FV     ++G   RS+  +   A   
Sbjct: 801 RKDAQASKLAISIEDLQAGETVHGFVRGILSDKVFVELGNGISGALFRSQLPEDMAAAPE 860

Query: 679 KTYYVGQSVRSNILDVNSETGRITLSLK 706
                 QS+ + +  V+   G   LS+K
Sbjct: 861 FGLRKDQSITARVTHVDVGKGLFWLSMK 888



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 1247 KIEDLSPNMIVQG-----YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            +IED+    +V+G     +     +    + LS  +   V   +L+D  ++ PE++F  G
Sbjct: 535  RIEDIKAGEVVKGKVHKLFADKTGATAVLVHLSDGITGLVPEMHLADVRLQHPERKFREG 594

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYG 1358
              V  RVL  EP   ++ +TLK    ++   SE+   +N  +   G    G + RV   G
Sbjct: 595  LPVTARVLYTEPARHQIHLTLK----KSLVNSEVKPWTNYDMISEGATGPGILVRVRRNG 650

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              +   N  +     V+E+SE  + +    + AG+ V V++L VD ++R++ +  K
Sbjct: 651  ATVQFYN-RVRAWLPVAEMSEAFIHDATRHFHAGQVVNVRVLSVDAKERQLLVSCK 705



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 177/447 (39%), Gaps = 84/447 (18%)

Query: 413  KPGKKFKVGAELVFRVLG-------------VKSKRITVTHKKTL----VKSKLAILSSY 455
            +P   FK+   +  RVLG              +S   T T++ T     +KS+  +LS  
Sbjct: 971  RPTAHFKMNDTIQARVLGRHDPRNFRFLPITSRSSNKTTTYEMTAKTEEIKSEADVLS-- 1028

Query: 456  AEATDRLITH----GWITKIEKHGCFVRFYNGVQGFAPRSEL--GLDPGCEPSSMYHVGQ 509
                D++ T      +I  I     +V     ++G     +L   L+   +    + VG 
Sbjct: 1029 ---LDKVTTGSSYIAFINNIADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGS 1085

Query: 510  VVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYV--- 564
             +K R+ +    + +++L+     T   +S  DL K+G ++   V  +   ++VV +   
Sbjct: 1086 ALKVRVKAVDAVNGKLDLTAASTVTGKSLSLQDL-KVGHVLPARVTKLHDASIVVQINES 1144

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLIN 622
            IA       I  E LAD  + A     V+    +  ++ V+D +  N  L LSA+ S + 
Sbjct: 1145 IA-----APIFMEQLADDYDKAQPKNFVVG---DVLRVCVIDIDIPNKKLGLSARPSRVL 1196

Query: 623  SAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 676
            S+  LP      +D + +  N VV G+V +I   G +VR    +  +   S   D    D
Sbjct: 1197 SSS-LPVKDPEITDRAQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSDEYIKD 1255

Query: 677  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 736
                ++V Q V   ++    +     LSLK S         ++  ++     A L+    
Sbjct: 1256 WKSAFHVDQLVTGKVISNKDDQRNPQLSLKTSV--------IKTDYVEPLDFANLK---- 1303

Query: 737  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE------ 790
                        IG ++  KV    D+GV +  +  ++V G     Q+A A V+      
Sbjct: 1304 ------------IGQIVTAKVRHVEDYGVFLIVDNSNNVSGLCHISQIADALVDKEKLKD 1351

Query: 791  ---SGSVIQAAILDVAKAERLVDLSLK 814
                  V++A ++ V    R V  +LK
Sbjct: 1352 MYKKDDVVKAKVIKVDPKSRKVSFTLK 1378



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 24/186 (12%)

Query: 542 VKLGSLVSGVV-----DVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 595
           +K G +V G V     D     AV+V+ ++ G + G +P  HLAD  L+H         P
Sbjct: 539 IKAGEVVKGKVHKLFADKTGATAVLVH-LSDGIT-GLVPEMHLADVRLQH---------P 587

Query: 596 GYEFDQLL-----VLDNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 648
             +F + L     VL  E +   + L+ K SL+NS  +  ++   I   +   G +  + 
Sbjct: 588 ERKFREGLPVTARVLYTEPARHQIHLTLKKSLVNSEVKPWTNYDMISEGATGPGILVRVR 647

Query: 649 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
             G  V+F  R+  + P ++  +    D ++ ++ GQ V   +L V+++  ++ +S K  
Sbjct: 648 RNGATVQFYNRVRAWLPVAEMSEAFIHDATRHFHAGQVVNVRVLSVDAKERQLLVSCKDP 707

Query: 709 CCSSTD 714
               T+
Sbjct: 708 AAVDTN 713



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 109/518 (21%), Positives = 211/518 (40%), Gaps = 68/518 (13%)

Query: 914  LLLKAISETETSSSKRAKKKSSYD---VGSLVQ-AEITEIKP-----LELRLKFGIGFHG 964
            LL   +S +   S K  ++K   D   + ++V+ A++ ++ P      +L +K  +GF  
Sbjct: 422  LLDHVLSLSTRMSGKPKERKPPIDLLPISTIVESAKVVKVAPSQGAFFDLGIKDVVGF-- 479

Query: 965  RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE 1024
              HI+ ++DDK +++      FK+     ARI+   N  D     L++LS++  ++    
Sbjct: 480  -AHISRLSDDKVDILSEEAGAFKLDSKHKARIVG-YNALDG----LFQLSLEKKVI---- 529

Query: 1025 IGSKLLFEECDVSIGQRVTGYVYKV-DNEWALLTISRHLKAQL--FILDSAYEPSELQEF 1081
               +      D+  G+ V G V+K+  ++     +  HL   +   + +       LQ  
Sbjct: 530  --DQPFLRIEDIKAGEVVKGKVHKLFADKTGATAVLVHLSDGITGLVPEMHLADVRLQHP 587

Query: 1082 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1141
            +R+F  G  VT  VL     +  + L L+  +  ++ +    +N +M   I EG    G 
Sbjct: 588  ERKFREGLPVTARVLYTEPARHQIHLTLK--KSLVNSEVKPWTNYDM---ISEGATGPGI 642

Query: 1142 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1201
            + ++     G  VQ    +   +   E+    +            D    +  GQ V  +
Sbjct: 643  LVRVRR--NGATVQFYNRVRAWLPVAEMSEAFI-----------HDATRHFHAGQVVNVR 689

Query: 1202 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1261
            VL +    R               +S  + + + T+ +           L+P  IV+G V
Sbjct: 690  VLSVDAKERQLL------------VSCKDPAAVDTNKEAA------FNALNPGGIVKGTV 731

Query: 1262 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE---SPEKEFPIGKLVAGRV-LSVEPLSKR 1317
               + +   + +   +   + L +L+DG  +   S  K+  +G  +   V L+    SK 
Sbjct: 732  VEKSDESATLDIGNGVKGILRLGHLTDGSEKKDISTMKKIRVGGTLEDLVILTKHGKSKT 791

Query: 1318 VEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
              V+ K S  + A  S++  ++ +L  G+ V G ++ + S  +F+ + N  + G    S+
Sbjct: 792  ATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGILSDKVFVELGN-GISGALFRSQ 850

Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            L ED     E   R  + +  ++  VD  K    L MK
Sbjct: 851  LPEDMAAAPEFGLRKDQSITARVTHVDVGKGLFWLSMK 888


>gi|307110620|gb|EFN58856.1| hypothetical protein CHLNCDRAFT_19641 [Chlorella variabilis]
          Length = 288

 Score =  300 bits (769), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 143/269 (53%), Positives = 200/269 (74%), Gaps = 3/269 (1%)

Query: 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1602
            AP +  E+E+LV S+PNSS+VWI+Y AF++S+ +++KAR++A+RALQTI+ REE EK N+
Sbjct: 21   APSSITEYEQLVLSTPNSSYVWIQYFAFLISLGELDKARALADRALQTISYREEGEKFNV 80

Query: 1603 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1662
            WVAY N+EN YG+  E+A + +  RAL + D ++++LA + ++ERT +  L ++ L  M 
Sbjct: 81   WVAYLNMENLYGS--EDASLALLSRALAHTDARRMYLAAVDIFERTHKEGLVEQCLKAMT 138

Query: 1663 KKFKHSCKVWLRRVQ-RLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            +KF  S +VWLR V+ RL     EG +  + R+L SLP+ +HI+ ISQT +LEFK G A+
Sbjct: 139  RKFSDSAEVWLRAVRYRLASGDAEGARKTLDRSLQSLPQFEHIRMISQTGLLEFKIGDAE 198

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            RGRS+FEG+L  YPKR DLWS+YLDQE+  GD   IR LFERA  L LPPKKMKFLFK+Y
Sbjct: 199  RGRSIFEGVLRNYPKRLDLWSVYLDQEVAAGDPQRIRALFERATHLQLPPKKMKFLFKRY 258

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            L+YEK+ G    +E+VK++A+EYVE+  A
Sbjct: 259  LDYEKAHGTAAGVEHVKKRALEYVEAQAA 287


>gi|358056290|dbj|GAA97773.1| hypothetical protein E5Q_04452 [Mixia osmundae IAM 14324]
          Length = 1414

 Score =  300 bits (767), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 264/952 (27%), Positives = 449/952 (47%), Gaps = 137/952 (14%)

Query: 884  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK----AISETETSSSKRAKKKSSYDVG 939
            K P+K+F  G  V   + A  S S+  ++++ LK    A       S    K + +YD  
Sbjct: 559  KHPEKRFKIGDVVKGRIFAADSESS--KIVVTLKKSLLASDLPVPQSLADVKPQQAYDA- 615

Query: 940  SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK 999
              V ++I E K L + L     F G   I  +++     V+NL + +K GQ +  RI+  
Sbjct: 616  --VLSKIME-KALLVDL-----FGGARAIIPISEAGQGFVDNLAALYKEGQRLQVRIMHV 667

Query: 1000 SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1059
                    + L E  +          G   L     + +GQ+    +  + N+  +L I+
Sbjct: 668  DTSAGRITASLRERDLD---------GVAALE---GLKVGQKTEAVIAALHNDNIVLEIA 715

Query: 1060 RHLKAQLFILDSAYEPS---ELQEFQRRFHIGKAVTG-HVLSINKEKKLLRLVLRPFQ-- 1113
               KA+  +  +A+         E ++R  +G+ +    V+S N +K +  L        
Sbjct: 716  PS-KARGLLSYTAHARQLGVATDELKQRIAVGQLLKDLTVVSKNTQKGIAILSSGSTSTN 774

Query: 1114 ---DGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1168
               +GISD         M  F  +  G+   G+I  I S   GL VQ+   L    H+T 
Sbjct: 775  SSANGISD---------MLQFESVAVGETYAGKI--IGSAPQGLHVQLSRALRALAHWT- 822

Query: 1169 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1228
                   D L  +D     P      G  V C ++      R    V++SLR S+   ++
Sbjct: 823  -------DVLDDFDAALPAP------GTVVSCNIVGKDEAAR---RVDVSLRPSVMADNA 866

Query: 1229 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1288
              S      +  P   +  I++L     ++G+V NV   G F+ + R L A+V +  L D
Sbjct: 867  EGS------ILDP--EIISIDELRIGQKIRGFVVNVADSGLFVSVGRSLTARVQIRELFD 918

Query: 1289 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1348
             YV   +  F +G+LV+G +L ++P   ++E++L++   RTA++S+ N L++  VG I  
Sbjct: 919  EYVREWKPRFSVGQLVSGSILKLDPERNQIELSLRS--ERTAAKSDANALASYQVGQIAS 976

Query: 1349 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1408
              IK +E YG F+ I +T + GLCH S+  E         ++ G+ V+ +I++VD + ++
Sbjct: 977  CVIKTIERYGAFLRITDTLVSGLCHRSQFPEQGA-GWSKGFKIGQSVQARIVEVDTKSKK 1035

Query: 1409 ISLGMKSSYFKN-DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1467
            I   +     ++ D   +  S+  E+DE+ +E        +++    A     +   +G 
Sbjct: 1036 IGFTLLDVAQEDPDISAILPSAVGEADESDDE------DLVVDLGDPAPTAEHIGPNNGH 1089

Query: 1468 SLVLAQIESR---------------ASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID 1512
              V++ I S+               A  P LEV+ D+ +  + +  S+            
Sbjct: 1090 EAVISDISSKPLALIGGFEWSTTQSAPTPALEVDSDEAESTVADDASE------------ 1137

Query: 1513 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1572
                                  EE     D  R     ER +  SP+SS +WI+Y++ +L
Sbjct: 1138 ----------------------EETGSASDGDRNVTSLERELIGSPDSSILWIQYISLLL 1175

Query: 1573 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1632
               D+ +AR +A+RAL TIN RE+ E+ N+W A  ++EN+YG P  E +   F+ A+Q  
Sbjct: 1176 EARDITQAREVAQRALSTINYREDEERFNVWNAILSMENQYGTP--ETLETAFKEAVQAN 1233

Query: 1633 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVV 1691
            + K++HL L  +   + ++  A+EL  + +KKF  S KVW      L ++++    + +V
Sbjct: 1234 EAKRIHLRLAEILTASNKHAQAEELYQRTVKKFSQSSKVWTIFATYLHERRKSSDARELV 1293

Query: 1692 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1751
             R++ SLP+ KH+K  ++ A +EFK+G A+RGR+MFEGI+  YPKR DLW +Y+D E R 
Sbjct: 1294 ARSMKSLPQRKHVKTAAKFAQVEFKHGDAERGRTMFEGIIDSYPKRLDLWLVYIDMEARS 1353

Query: 1752 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803
             ++  +R LF+R ++  L  KK K + KK+L  EK  G++  +E VK++A E
Sbjct: 1354 QNMAAVRFLFDRLLAQKLSTKKAKSVLKKWLSLEKLHGDDASVETVKERARE 1405



 Score =  124 bits (310), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 197/774 (25%), Positives = 322/774 (41%), Gaps = 94/774 (12%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL-----DNEIEA--- 52
           +  + G KL  +V  V+  +L++ LP  L G   L   +  L   L     D+E E+   
Sbjct: 118 KRCTPGTKLLCLVVSVHALELIVSLPNELSGHIPLVNISSGLTAQLASGHPDDESESTDE 177

Query: 53  -NEDNL--LPTIFHVGQ--LVSCIVLQLDD------------DKKEIGKRKIWLSLRLSL 95
            +ED+   L  ++  GQ  + S +  +  D            D+     R++ LSL    
Sbjct: 178 QDEDDSPDLTQMYEPGQYLIASVVACRSSDVARNTLDPSRRGDEAYRTSRRLELSLDPKP 237

Query: 96  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL----PSFTGFLPRNNLAENSGIDVKP 151
           +   L+   + +G++L   VKS+ED+GY+L   L     SF  F       E +    K 
Sbjct: 238 INDDLARSDLTDGLLLPVSVKSVEDNGYVLDLRLKDEMTSFVKF-------EEAQTSRK- 289

Query: 152 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDL---------LVPGMMVST 202
             L+ G V     T +++ L+S+  T +  +  D   I             L+PG  V+ 
Sbjct: 290 --LIGGQVI----TARLIKLASNGRTCTLAI--DATRIRAAALATAPTLHGLLPGNQVNA 341

Query: 203 RVQSILEN-GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD-PT-- 258
            V +++   G+ + FL +F GT+D  HL           +Y +  K+ AR+L+   PT  
Sbjct: 342 IVSAVIPGRGLNVKFLGFFDGTIDHTHLV-------IGKEYKEGNKIKARLLWSSAPTLD 394

Query: 259 -SRAVGLTLNPYLLHNRAPP--------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 309
            +R   L+  P++L   APP          V +G   D  KV R +   GL         
Sbjct: 395 AARTFALSALPHVL-KLAPPLLGDTLLKEAVPIGTFVDSVKVNRTESEHGLACTARLGAN 453

Query: 310 STPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVF 366
              A+V IS V++E +  L  K   Y  G+  R R++G   L+G     L+ S       
Sbjct: 454 ECAAFVHISRVSDEHLGTLSAKSGPYCPGTTHRGRVIGLALLDGALQISLQPSVLAQRFL 513

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
             SDV  G  VK  +  + S    V   G V A+    H S+ ++  P K+FK+G  +  
Sbjct: 514 RVSDVVVGEAVKATIKRITSKAMFVSVDGNVDAVVWPLHYSDIKLKHPEKRFKIGDVVKG 573

Query: 427 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
           R+     +S +I VT KK+L+ S L +  S A+   +      ++KI +    V  + G 
Sbjct: 574 RIFAADSESSKIVVTLKKSLLASDLPVPQSLADVKPQQAYDAVLSKIMEKALLVDLFGGA 633

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR-VSEDDLVK 543
           +   P SE G       +++Y  GQ ++ RIM    ++ RI  S   +    V+  + +K
Sbjct: 634 RAIIPISEAGQGFVDNLAALYKEGQRLQVRIMHVDTSAGRITASLRERDLDGVAALEGLK 693

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQL 602
           +G     V+  +  N  +V  IA   ++G +     A  L  AT  +K  I  G     L
Sbjct: 694 VGQKTEAVIAALH-NDNIVLEIAPSKARGLLSYTAHARQLGVATDELKQRIAVGQLLKDL 752

Query: 603 LVLDNESSN--LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET---GCFVRFL 657
            V+   +     +LS+  +  NS+    SD       +V   Y   II +   G  V+  
Sbjct: 753 TVVSKNTQKGIAILSSGSTSTNSSANGISDMLQFESVAVGETYAGKIIGSAPQGLHVQLS 812

Query: 658 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
             L   A  +  +D   A L      G  V  NI+  +    R+ +SL+ S  +
Sbjct: 813 RALRALAHWTDVLDDFDAALPAP---GTVVSCNIVGKDEAARRVDVSLRPSVMA 863


>gi|328850494|gb|EGF99658.1| hypothetical protein MELLADRAFT_22369 [Melampsora larici-populina
            98AG31]
          Length = 1489

 Score =  299 bits (765), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 214/628 (34%), Positives = 346/628 (55%), Gaps = 51/628 (8%)

Query: 1200 CKVLEISRTVRGTFHVELSLRSS-LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1258
            C V+++ R    T  V L+LRSS L+     ++S++    D P   +  I+DL     ++
Sbjct: 879  CAVVKVDRQ---TSKVYLTLRSSRLNRGVQKSASEVR---DRP---IVSIKDLKKGDKIR 929

Query: 1259 GYVKNVTSK-GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1317
            G+++ +  K G  + +   L AKV +S L D  +     +F +G++V+G +++    S+ 
Sbjct: 930  GFIQRICEKAGLLVRIGTNLSAKVKISELFDQDIPDWVGKFKVGQVVSGVIITPVKASRG 989

Query: 1318 VEVTLKTSD-SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
            ++++L+ +      S  +   L     G IV   I+++E YG+F+ I++  + GLCHVS+
Sbjct: 990  IQLSLRENPFGPKVSDPKKLVLEKFQEGQIVGTTIRKIEKYGMFLAIDDAGISGLCHVSQ 1049

Query: 1377 LSED-HVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1434
            LS+D  VD N    Y+ G +++  ++KVD + RRISL +K S          +  E+E D
Sbjct: 1050 LSDDDEVDRNWAKKYKEGMRLQAALVKVDLKARRISLSIKPS----------IVGEQELD 1099

Query: 1435 EAIEEVGSYN---------RSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV 1485
               +E  S +          S++ ++ SV   DM + S+     +  QI++     P   
Sbjct: 1100 SGDDEDESDDEDVEEEELDHSNVEKDDSV---DMVVTSKSVNQPLAVQIQAPCLALPGGF 1156

Query: 1486 NLDD--EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA 1543
            N +   +    D   S ++G +DE    D   + H   +EKE  E E R +    LE  +
Sbjct: 1157 NWNSTVQTRAADEQDSDSEGSSDED---DHATSNHVTGQEKEVSEPEHRNSSH--LENGS 1211

Query: 1544 PRTP-DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1602
              T   + ER +  SPNSS +WI+ M+  +  AD+ +AR   +RAL  I+ REE+EKLN+
Sbjct: 1212 VTTSIADLERQLLGSPNSSLLWIQLMSCHIQQADLNEARETVKRALNGIHYREESEKLNV 1271

Query: 1603 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1662
            W+A+ NLEN YG   EE ++KVF  A +  D K V L +  +Y  + + + A+EL  K++
Sbjct: 1272 WIAWLNLENAYGT--EEQMMKVFGEASKANDTKTVWLKMAEIYTESGKIEKANELYTKLV 1329

Query: 1663 KKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            KKF  S K W    +  L  +QE     ++ R+L SLP+HKH+K +++ A  EFK+G  +
Sbjct: 1330 KKFSESSKAWSLYARFCLTNKQEAQTLELLARSLRSLPKHKHLKTMNKFAQYEFKHGEIE 1389

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQE-IRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1780
            RGR++FEG+++ YPKRTDLW++Y+D E  RL   D +R LF R +SL L PKK KF+FKK
Sbjct: 1390 RGRTLFEGLIASYPKRTDLWNVYIDLERTRL---DRVRALFARMLSLKLNPKKSKFVFKK 1446

Query: 1781 YLEYEKSVGEEERIEYVKQKAMEYVEST 1808
            +L  EK  G+E     V ++A  YV+++
Sbjct: 1447 WLGIEKEFGDEASQNKVLEQARAYVQAS 1474



 Score =  128 bits (321), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 133/615 (21%), Positives = 261/615 (42%), Gaps = 99/615 (16%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------------------------- 34
           + +++G+KL G++ E+   +L++ LP  L G                             
Sbjct: 92  RRLTSGLKLAGLIIEIRPLELIVALPSQLVGHVPITEISSYYTQKLQESTDQDDEDTDSE 151

Query: 35  -LARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKR-------- 85
                +D  D    + +++     L  IF VGQ + C+V+        I  R        
Sbjct: 152 DDQSNSDKADD-YQHRVKSGGLQGLNEIFKVGQWIRCMVIHTTSGTPNIAHRASPLVRAA 210

Query: 86  -KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-------------- 130
            ++ L++  + L   L  + +   M L   VKSIED+GY++   +P              
Sbjct: 211 HRVKLTIDPARLNGDLEKKDLSANMTLDGAVKSIEDNGYVVDLCVPVNSSQQASSSAPQT 270

Query: 131 --SFTGF-----LPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 183
             +F  F     +P+ +L       +  G +++  +  + ++     +  DP  ++  + 
Sbjct: 271 VTTFVLFSDAIKIPQTHLHNRELWQI--GQIVRCRIDKVSKSGSTCTVFVDPTGIASSLL 328

Query: 184 KDLKGISIDLLVPGMMVSTRVQSIL-ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 242
                I+ID ++P  +V+  + +++ E G+ + FL Y+ GT+D+++L      T  ++ +
Sbjct: 329 T--TAINIDCVLPLHLVTCLITAVVPEEGLNVEFLGYYKGTIDLYNLGVGIGGTKVEDRF 386

Query: 243 NQHKKVNARILFVDPTS---RAVGLTLN-----------PYLLHNRAP---PS------- 278
              +K+ AR+L+   +S   +   L+L            P LL N  P   PS       
Sbjct: 387 KAGQKIRARVLWHTRSSSPQKTFSLSLLDHCVNMVTPGLPLLLQNDTPNGLPSESIEHLM 446

Query: 279 HVKVGDIYDQSKVVRVDRGLGLLLDIP--STPVSTPAYVTISDVAEEEVRKL----EKKY 332
              +G  +  ++V  V +  GL ++    S       ++ IS + +  +  +       Y
Sbjct: 447 RFNIGYTFQSTRVCGVVKDWGLYVEYSDNSNQQRVIGFIHISAIRDTHLSDILVEGSGPY 506

Query: 333 KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 392
           + G+  + +++G   ++G+     + S  E       DV  G +V  +V  + S    + 
Sbjct: 507 RLGTTHKAKVVGISPIDGMLQLSSQPSVVEQPYIRPQDVAVGEIVTAEVTRLCSSALFLS 566

Query: 393 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLA 450
             GG+  +    H S+ ++  P KKF+ G +L  RVL V     RI +T +K+L+    +
Sbjct: 567 IFGGLDCVVWPDHYSDVKLQHPEKKFQAGMKLTARVLYVNPNKHRIALTLRKSLLDPTFS 626

Query: 451 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 510
            ++SYA A   ++T   IT+++     + F+   +G  P  E   +   E  S +  G+V
Sbjct: 627 SITSYATAQPGMVTDAVITRVKARHLEIEFFGQTRGVIPIRE-AAEKFSESLSDFRAGRV 685

Query: 511 VKCRIMSSIPASRRI 525
           VK +I+S  P +R+I
Sbjct: 686 VKVQILSVDPLARKI 700



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 3/161 (1%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            +D++   IV   V  + S   F+ +   LD  V   + SD  ++ PEK+F  G  +  RV
Sbjct: 543  QDVAVGEIVTAEVTRLCSSALFLSIFGGLDCVVWPDHYSDVKLQHPEKKFQAGMKLTARV 602

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
            L V P   R+ +TL+ S     + S I + +    G +    I RV++  L I       
Sbjct: 603  LYVNPNKHRIALTLRKS-LLDPTFSSITSYATAQPGMVTDAVITRVKARHLEIEFFGQTR 661

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
             G+  + E +E   +++   +RAG  VKV+IL VD   R+I
Sbjct: 662  -GVIPIREAAEKFSESLSD-FRAGRVVKVQILSVDPLARKI 700


>gi|320589974|gb|EFX02430.1| rRNA biogenesis protein [Grosmannia clavigera kw1407]
          Length = 1753

 Score =  298 bits (763), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 327/1381 (23%), Positives = 629/1381 (45%), Gaps = 175/1381 (12%)

Query: 483  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS-- 537
            GV GF   S +    +D   E S  + VG   + R++          +SF  K    S  
Sbjct: 474  GVPGFVHISRVKDGKVDALYESSGPFKVGSTHRGRVIGYNAVDGIFLVSFEQKVLEQSFI 533

Query: 538  --EDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 590
              ED  V +G +V+G +   ++  N +  ++  IA G + G +P  H +D  L+H    +
Sbjct: 534  RIED--VPVGDVVTGHIKKLLLNQNGISGLIVEIADGIA-GLVPEIHFSDIKLQHP---E 587

Query: 591  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 649
               + G +   ++L +D  +    L+ K +L+NS          +       G V N++ 
Sbjct: 588  KKFREGMKVTARVLSIDPANHQFRLTLKKTLVNSDIPPVKSFDDLSVGQQCLGTVVNVVP 647

Query: 650  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
             G +V+F G L GF P ++  +    D  + +  GQ+V   +L  + +  ++ +S K   
Sbjct: 648  IGAYVQFYGDLRGFLPVAEMSEAFIRDPKEHFRQGQAVNVRVLRFDPDLNKLVVSCKDPS 707

Query: 710  CSSTDASFMQEHFLLEEKIAMLQSSKHNGS-ELKWVEGFIIGSVIEGKVHESNDFGVVVS 768
                D     +   +   ++    +KH+ S E++ VE  +  ++  G + + +       
Sbjct: 708  AFGVDKRQALQDLQICSIVSAKAIAKHDDSVEVEIVENGLKATLPIGHLSDRSP------ 761

Query: 769  FEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSN 827
                         +Q A   +  G V+ +  +LD  +  R++ +S K   I   +E    
Sbjct: 762  -----------AKNQAALKRIHIGQVLPELLVLDKHEGRRVITVSQKPSLIAASKEG--- 807

Query: 828  RQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFP 886
            +     +  R  S   G  + +      V+    +V  LP+        +  D+   K  
Sbjct: 808  KLLVNMEDARTGSLVTGFVRNITPTAAFVQFAANIVALLPKPLMPRTAQAEPDFGLHK-- 865

Query: 887  QKQFL--------NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD- 937
              Q L        NG+     V +LPS   A       KA + + T  +      +++D 
Sbjct: 866  -SQTLALKIISVENGR----LVASLPSDVPAEEKDTGEKAGAGSRTLLNPVDSSLATFDD 920

Query: 938  --VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVT 993
              +G + +A IT +K  +L ++      GR+ ++E+ D   +V   ++   NF+ GQ + 
Sbjct: 921  LHLGQITKARITSVKNTQLNVRLADNVSGRVDMSEIFDSWDDVPDAKSPLQNFEEGQILD 980

Query: 994  ARIIAKSNK--------PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1045
             RI+   +            K+  + ELSIKPS L   +    L  ++  V +G     +
Sbjct: 981  VRILGVHDAKRRVYLPITQQKRRSVLELSIKPSSLQGGKTPDILSIDK--VQVGSSWVAF 1038

Query: 1046 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1105
            V         L+++ H++ +L+ ++++ + S +++ +  F +G A+   V+ ++ EK  +
Sbjct: 1039 VNNHGANCLWLSLTPHVRGRLYGMEASDDMSLVKDLEANFPVGMAIHVRVVQVDVEKGRI 1098

Query: 1106 RLVLR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1164
             L  R P  +G          D   + I +  ++  +++K+  G   ++VQ+   + G +
Sbjct: 1099 DLSARSPGGEG----------DLAWSSIEKNLVLPAKVTKVSDG--QVLVQLSKTVSGPL 1146

Query: 1165 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1224
            H  ++ +         +D+      + Y +   ++  V+ +  + +    + LS R S  
Sbjct: 1147 HLVDIAD--------DFDQAT---TTAYFKHDIIRVSVVSVDASNK---RMRLSTRPSRV 1192

Query: 1225 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1284
              SS    D         + +    D+ P  +++G+V+ ++ KG F+ L   + A V ++
Sbjct: 1193 LNSSFPVED---------REILDFSDVKPGSVIRGFVRGISDKGVFVNLGGDVVAFVRVT 1243

Query: 1285 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1344
            +LSD +++  +  F I +LV GRV +V+   K+++++LK S +   + + +  L +LH G
Sbjct: 1244 DLSDSFLKDWKAHFRIDQLVKGRVTAVKAEVKQIQMSLKAS-AIDENYAPLLTLDDLHEG 1302

Query: 1345 DIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1403
             IV G++++V  +G FI ++N+ N+ GLCH +E+++  V                    D
Sbjct: 1303 QIVSGRVRKVADFGAFIVVDNSANVSGLCHRTEMADKSVR-------------------D 1343

Query: 1404 KEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES 1463
              K R++LG+K  YF++++D+         ++A+   G  N +  + ++     D   ++
Sbjct: 1344 ATKLRVNLGLKPKYFEDESDS--------DEDAMSVDGGDNVADDVSDNGKDGADA-AKT 1394

Query: 1464 EDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE 1523
             +GG L     +   +   L+    D Q D+D          D    + +++ R  K   
Sbjct: 1395 ANGGGLSGGAFDWTGNA--LDQENGDSQSDLD--------EEDGGALVAKRSKRSKKAAA 1444

Query: 1524 KEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1583
              + +   R A+   L+   P+T  ++ERL+    + S +WI+YMAF + ++++ KAR I
Sbjct: 1445 AADID---RTAQ---LDVRGPQTASDYERLLLGQADMSALWIEYMAFQVQVSELAKAREI 1498

Query: 1584 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1643
            AERA++TIN+R+E E+LN+W+AYFNLE EYG+  EE    VF+RA QY D ++V      
Sbjct: 1499 AERAIKTINVRQETERLNVWIAYFNLEVEYGS--EETADAVFKRACQYNDDREVFARAAS 1556

Query: 1644 LYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSL-P 1699
            +Y ++ +   ADEL   M KKF   S ++W+     L     +  +A  ++ RA+ +L  
Sbjct: 1557 IYIQSGKLNKADELFQTMTKKFGAQSPQIWINYAHFLHHSMHDVDRARTLLTRAVQTLGT 1616

Query: 1700 RHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL------ 1751
                I  +S+ A LEF++  G  + GR+ FE +L ++PK+ D+W   LD E  +      
Sbjct: 1617 SAATITLMSRFAALEFRSPVGNPEHGRTTFETLLDKWPKKHDIWDQLLDLETSVYTAEKA 1676

Query: 1752 ------GDVDLIRGLFERAI-SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804
                   D  ++R +FER   +  L  ++ K  F+++ ++E+  G+ +    V  +A E+
Sbjct: 1677 KGAEGKADPAVVRDVFERGTKAKGLKARRAKSWFQRWAKWEEQNGDAKSRARVTTRAKEW 1736

Query: 1805 V 1805
             
Sbjct: 1737 A 1737



 Score =  184 bits (466), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 187/748 (25%), Positives = 335/748 (44%), Gaps = 59/748 (7%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL--------DNEIEANEDNL 57
           G  + G ++E+   ++ + LP  L G   +   + AL   +        D+E  A+E+  
Sbjct: 146 GSLVLGQISEITPLEIAVSLPNNLVGHLSVTSISQALTERIEAEAENANDDEDAAHEEVD 205

Query: 58  LPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
           + T+F +GQ +   V+   DDD ++  KR+I LS R  L   GL+ + V     + A V 
Sbjct: 206 VQTLFGLGQYIRVSVVSTEDDDAEKKKKRRIELSTRPELANAGLTDQDVVRNSTVMASVI 265

Query: 117 SIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSS 173
           S+ED G+++  G+      GFL +  L  +   + ++PG ++  +V       KV  LS+
Sbjct: 266 SVEDRGFVMDLGIQDSDLRGFLAKKELDPSIPEERLQPGAVILCLVTGKATNGKVAQLSA 325

Query: 174 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
           +   +           +I+  +PG  V   V  +   G+    L +   T D+ H     
Sbjct: 326 NKTQLGSIKNVASDATTINTFLPGTAVDVLVSEVTARGLAGKVLGHLDATADMTHSGAGG 385

Query: 234 PTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL------------HNRAPPSH 279
              +    Y    K+ AR++   PT+    V ++L P++L            H++AP   
Sbjct: 386 SIGDLDEKYKVASKIKARVICTFPTADNPKVAISLLPHILSLQQQTAGGKNVHDKAPTQA 445

Query: 280 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGS 336
           + +  I +   V + +  +GL +D+    V  P +V IS V + +V  L +    +K GS
Sbjct: 446 LPLSTIVESCVVRKAELNVGLWVDVGVEGV--PGFVHISRVKDGKVDALYESSGPFKVGS 503

Query: 337 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-----DSFGAIV 391
             R R++G+  ++G+     +    E       DV  G VV G +  +        G IV
Sbjct: 504 THRGRVIGYNAVDGIFLVSFEQKVLEQSFIRIEDVPVGDVVTGHIKKLLLNQNGISGLIV 563

Query: 392 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKL 449
           +   G+  L P  H S+ ++  P KKF+ G ++  RVL +   + +  +T KKTLV S +
Sbjct: 564 EIADGIAGLVPEIHFSDIKLQHPEKKFREGMKVTARVLSIDPANHQFRLTLKKTLVNSDI 623

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
             + S+ + +      G +  +   G +V+FY  ++GF P +E+      +P   +  GQ
Sbjct: 624 PPVKSFDDLSVGQQCLGTVVNVVPIGAYVQFYGDLRGFLPVAEMSEAFIRDPKEHFRQGQ 683

Query: 510 VVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY 563
            V  R++   P   ++ +S      F +   +  +D  +++ S+VS        ++V V 
Sbjct: 684 AVNVRVLRFDPDLNKLVVSCKDPSAFGVDKRQALQD--LQICSIVSAKAIAKHDDSVEVE 741

Query: 564 VIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS 619
           ++  G  K T+P  HL+D    ++   +K  I  G    +LLVLD       + +S K S
Sbjct: 742 IVENGL-KATLPIGHLSDRSPAKNQAALKR-IHIGQVLPELLVLDKHEGRRVITVSQKPS 799

Query: 620 LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
           LI ++++  L  +       S+V G+V NI  T  FV+F   +    P+       +A+ 
Sbjct: 800 LIAASKEGKLLVNMEDARTGSLVTGFVRNITPTAAFVQFAANIVALLPKPLMPRTAQAEP 859

Query: 678 SKTYYVGQSVRSNILDVNSETGRITLSL 705
               +  Q++   I+ V  E GR+  SL
Sbjct: 860 DFGLHKSQTLALKIISV--ENGRLVASL 885



 Score = 44.7 bits (104), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 365  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
            +   SDVKPG V++G V  +   G  V   G V A   +  +S+  +      F++   +
Sbjct: 1204 ILDFSDVKPGSVIRGFVRGISDKGVFVNLGGDVVAFVRVTDLSDSFLKDWKAHFRIDQLV 1263

Query: 425  VFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 482
              RV  VK+  K+I ++ K + +    A L +  +  +  I  G + K+   G F+   N
Sbjct: 1264 KGRVTAVKAEVKQIQMSLKASAIDENYAPLLTLDDLHEGQIVSGRVRKVADFGAFIVVDN 1323

Query: 483  --GVQGFAPRSELG 494
               V G   R+E+ 
Sbjct: 1324 SANVSGLCHRTEMA 1337


>gi|451851669|gb|EMD64967.1| hypothetical protein COCSADRAFT_189966 [Cochliobolus sativus ND90Pr]
          Length = 1795

 Score =  294 bits (752), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 240/907 (26%), Positives = 454/907 (50%), Gaps = 110/907 (12%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 996
            G+L+   +  +K  +L ++      GRI ++E+ ++  ++ +     ++FK+  T+ AR+
Sbjct: 938  GTLMTVRVRSVKDTQLNVELAANVPGRISVSELFENWDSIPDKKRPTAHFKMNDTIQARV 997

Query: 997  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV-SIGQRVTG-----YVYK 1048
            + + +  + +  FL   S   +  T  E+ +K   +  E DV S+ + +TG     ++  
Sbjct: 998  LGRHDPRNFR--FLPITSRSSNKTTTYEMTAKTEEIKSEADVLSLDKVITGSSYIAFINN 1055

Query: 1049 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1108
            + +    + IS +++ ++   D   +  +L + ++ F +G A+   V +++     L L 
Sbjct: 1056 IADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGSALKVRVKTVDAANGKLDLT 1115

Query: 1109 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1168
                   ++ K++ + +      +  G ++  R++K+      +VVQI   +   +   +
Sbjct: 1116 A---ASTVTGKSLSLQD------LKVGHVLPARVTKLHDA--SIVVQINESIAAPIFMEQ 1164

Query: 1169 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1228
            L +         YD+ Q           FV   VL +         +++ + +   G+S+
Sbjct: 1165 LAD--------DYDKAQ--------PKNFVAGDVLRVCV-------IDIDIPNKKLGLSA 1201

Query: 1229 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1288
              S  LS+ +      +     L  N +V+G+VK++ + G ++ L   ++A V +S+LSD
Sbjct: 1202 RPSRVLSSSLPVKDPEITDRTQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSD 1261

Query: 1289 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1348
             Y++  +  F + +LV G+V+S +   +  +++LKTS  +T    E    + L +G IV 
Sbjct: 1262 EYIKDWKSVFHVDQLVTGKVISNKEDQRNPQLSLKTSIIKT-DYVEPLEFATLKIGQIVS 1320

Query: 1349 GQIKRVESYGLFITIENTNLV-GLCHVSELSEDHVDN--IETIYRAGEKVKVKILKVDKE 1405
             +++ VE YG+F+ ++N+N V GLCH+S++++  VD   ++ +Y+  + VK K++KVD +
Sbjct: 1321 AKVRHVEDYGVFLIVDNSNNVSGLCHISQIADAVVDKEKLKDMYKKDDVVKAKVIKVDPK 1380

Query: 1406 KRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESED 1465
             R++S  +K S  K +            DE +E+V    +S          +D D E   
Sbjct: 1381 SRKVSFTLKYSQVKGEGKG--------EDEEMEDVSDVEQS----------EDDDSE--- 1419

Query: 1466 GGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK---------------- 1509
            GG  +   ++ R SV   E + D E  D D+  S+++   DE+K                
Sbjct: 1420 GGVKLDNDVDMR-SVKSAESDDDIELADADS--SEDESENDESKATAKSLSTSGFDWTGA 1476

Query: 1510 TIDEKNNRHAKKKEKEEREQEIRAA-------EERLLEKDA--PRTPDEFERLVRSSPNS 1560
            T+D    +   + E E+   + +         E+R  + DA  P++  ++ERL+   PNS
Sbjct: 1477 TLDFDQQKGGAESESEDDAPKKKKKSKKATIKEDRTGDLDAYGPQSVADYERLLLGQPNS 1536

Query: 1561 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1620
            + +W++YM F   + ++EKAR IA RAL TIN REE EKL++W A  +LEN++ +  ++A
Sbjct: 1537 AELWVRYMVFQRELNEIEKARQIARRALVTINPREEKEKLDVWTALLHLENDFSS--DDA 1594

Query: 1621 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQR 1678
            +  VF+ A Q  D +++H  ++ +Y  + +   ADEL   M+K   F    K WL     
Sbjct: 1595 INAVFKEACQNNDDREIHERMIKIYISSGKIDKADELYQSMMKNKSFTADPKFWLSYAAF 1654

Query: 1679 LLKQQQEG----VQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILS 1732
            L+   Q       +A++QRA  S+   +H     + A LEFK  NG  +RGR++FEG++ 
Sbjct: 1655 LMDVIQPPSPARARALLQRATQSVAAPQHRYLTQKFAALEFKSPNGDTERGRTIFEGLVD 1714

Query: 1733 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1792
             + K+ D+W +YL  E   G+ D +R LFER   +     +++ +FKK+ E+E SV  ++
Sbjct: 1715 TFAKKGDVWDMYLMLEQSHGESDKVRDLFERMTKVG-KSSRIRGVFKKWAEWENSVRNKK 1773

Query: 1793 RIEYVKQ 1799
             +E VK+
Sbjct: 1774 GVEKVKK 1780



 Score =  189 bits (481), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 205/760 (26%), Positives = 343/760 (45%), Gaps = 66/760 (8%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---------DNEIE 51
           + +S G  + G + +++ +DLV+ LP  L G   L   +D L+  L         D E  
Sbjct: 149 KKLSPGTIVLGQITDISHQDLVLALPNNLVGYVPLTAVSDKLNERLEKLLKEDESDKEDG 208

Query: 52  ANEDNL----LPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ 106
           +++D+     L  +F VGQ L +CI     +  K   ++++ LS+   L+  GL+   + 
Sbjct: 209 SDKDDFEDADLRDLFSVGQYLRACITATSGEGAK--ARKRLELSIEPKLVNTGLTKRKIP 266

Query: 107 EGMVLTAYVKSIEDHGYILHFGLPSFT--GFLPRNNLAENS-GIDVKPGLLLQGVVRSID 163
              ++ A V S EDHG ++  GL   T  GFLP+  L  N     V+ G +   ++  ++
Sbjct: 267 VNGMIQASVVSNEDHGLVMDLGLNDATLKGFLPKGELGPNLLHSKVQEGAVFMCLITGLN 326

Query: 164 RTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
              ++V LS+D  T +  +TK     +  +ID+ +PG  V   V     N +    L   
Sbjct: 327 SDGRIVKLSAD-HTKAGNLTKGNTLTEAPTIDVFLPGTAVDLLVTENTPNTITGKILGLI 385

Query: 221 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL------- 271
             T D +H   T   T+    +    KV AR+LF  P S  R V ++L  ++L       
Sbjct: 386 DATADAYHSGATEKATDVSQKHKIGSKVKARVLFTCPGSDPRKVSVSLLDHVLSLSTRMS 445

Query: 272 ---HNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
                R PP   + +  I + +KVV+V    G   D+    V    +  IS +++++V  
Sbjct: 446 GKPKERKPPIDLLPISTIVESAKVVKVAPSQGAFFDLGIKDVV--GFAHISRLSDDKVDI 503

Query: 328 LEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--I 382
           L ++   +K  S  + RI+G+  L+GL    L+    +       D+K G VVKGKV  +
Sbjct: 504 LSEEAGAFKLDSKHKARIVGYNALDGLFQLSLEKKVIDQPFLRIEDIKAGEVVKGKVHKL 563

Query: 383 AVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--IT 437
             D  GA   +V    G+  L P  H+++  +  P +KF+ G  +  RVL  +  R  I 
Sbjct: 564 FADKTGATAVLVHLSDGITGLVPEMHLADVRLQHPERKFREGLPVTVRVLYTEPARHQIH 623

Query: 438 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 497
           +T KK+LV S++   ++Y   ++     G +  + ++G  V+FYN V+ + P +E+    
Sbjct: 624 LTLKKSLVNSEVKPWTNYKMISEGATGPGILVNVRRNGATVQFYNRVRAWLPVAEMSEAF 683

Query: 498 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVV 552
             + +  +HVGQVV  R++ S+ A  R  L     P+ V  +     + +  G +V G V
Sbjct: 684 IHDATRHFHVGQVVNVRVL-SVDAKERQLLVSCKDPSAVDTNKEAAFNALNPGGIVKGTV 742

Query: 553 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVL--DNE 608
            V   +      I  G  KG +   HL D  E   +  MK  I+ G   + L+VL    +
Sbjct: 743 -VEKSDESATLDIGNGV-KGILRLGHLTDGSEKKDISTMKK-IRVGGTLEDLVVLAKHGK 799

Query: 609 SSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
           S    +S K SL   AQ  +L      +     VHG+V  I+    FV     ++G   +
Sbjct: 800 SKTATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGILSDKVFVELGNGISGALFK 859

Query: 667 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           S+  +   A         QS+ + +  V+   G   LS+K
Sbjct: 860 SQLPEDMAAAPDFGLRKDQSITARVTHVDVGKGLFWLSMK 899



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 102/447 (22%), Positives = 179/447 (40%), Gaps = 84/447 (18%)

Query: 413  KPGKKFKVGAELVFRVLG-------------VKSKRITVTHKKTL----VKSKLAILSSY 455
            +P   FK+   +  RVLG              +S   T T++ T     +KS+  +LS  
Sbjct: 982  RPTAHFKMNDTIQARVLGRHDPRNFRFLPITSRSSNKTTTYEMTAKTEEIKSEADVLS-- 1039

Query: 456  AEATDRLITH----GWITKIEKHGCFVRFYNGVQGFAPRSEL--GLDPGCEPSSMYHVGQ 509
                D++IT      +I  I     +V     ++G     +L   L+   +    + VG 
Sbjct: 1040 ---LDKVITGSSYIAFINNIADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGS 1096

Query: 510  VVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYV--- 564
             +K R+ +   A+ +++L+     T   +S  DL K+G ++   V  +   ++VV +   
Sbjct: 1097 ALKVRVKTVDAANGKLDLTAASTVTGKSLSLQDL-KVGHVLPARVTKLHDASIVVQINES 1155

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLIN 622
            IA       I  E LAD  + A     V     +  ++ V+D +  N  L LSA+ S + 
Sbjct: 1156 IA-----APIFMEQLADDYDKAQPKNFV---AGDVLRVCVIDIDIPNKKLGLSARPSRVL 1207

Query: 623  SAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 676
            S+  LP      +D + +  N VV G+V +I   G +VR    +  +   S   D    D
Sbjct: 1208 SSS-LPVKDPEITDRTQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSDEYIKD 1266

Query: 677  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 736
                ++V Q V   ++    +     LSLK         S ++  ++   + A L+    
Sbjct: 1267 WKSVFHVDQLVTGKVISNKEDQRNPQLSLK--------TSIIKTDYVEPLEFATLK---- 1314

Query: 737  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE------ 790
                        IG ++  KV    D+GV +  +  ++V G     Q+A A V+      
Sbjct: 1315 ------------IGQIVSAKVRHVEDYGVFLIVDNSNNVSGLCHISQIADAVVDKEKLKD 1362

Query: 791  ---SGSVIQAAILDVAKAERLVDLSLK 814
                  V++A ++ V    R V  +LK
Sbjct: 1363 MYKKDDVVKAKVIKVDPKSRKVSFTLK 1389



 Score = 47.8 bits (112), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 13/176 (7%)

Query: 1247 KIEDLSPNMIVQG-----YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            +IED+    +V+G     +     +    + LS  +   V   +L+D  ++ PE++F  G
Sbjct: 546  RIEDIKAGEVVKGKVHKLFADKTGATAVLVHLSDGITGLVPEMHLADVRLQHPERKFREG 605

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYG 1358
              V  RVL  EP   ++ +TLK    ++   SE+   +N  +   G    G +  V   G
Sbjct: 606  LPVTVRVLYTEPARHQIHLTLK----KSLVNSEVKPWTNYKMISEGATGPGILVNVRRNG 661

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              +   N  +     V+E+SE  + +    +  G+ V V++L VD ++R++ +  K
Sbjct: 662  ATVQFYN-RVRAWLPVAEMSEAFIHDATRHFHVGQVVNVRVLSVDAKERQLLVSCK 716



 Score = 47.0 bits (110), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 24/186 (12%)

Query: 542 VKLGSLVSGVV-----DVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 595
           +K G +V G V     D     AV+V+ ++ G + G +P  HLAD  L+H         P
Sbjct: 550 IKAGEVVKGKVHKLFADKTGATAVLVH-LSDGIT-GLVPEMHLADVRLQH---------P 598

Query: 596 GYEFDQLL-----VLDNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 648
             +F + L     VL  E +   + L+ K SL+NS  +  ++   I   +   G + N+ 
Sbjct: 599 ERKFREGLPVTVRVLYTEPARHQIHLTLKKSLVNSEVKPWTNYKMISEGATGPGILVNVR 658

Query: 649 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
             G  V+F  R+  + P ++  +    D ++ ++VGQ V   +L V+++  ++ +S K  
Sbjct: 659 RNGATVQFYNRVRAWLPVAEMSEAFIHDATRHFHVGQVVNVRVLSVDAKERQLLVSCKDP 718

Query: 709 CCSSTD 714
               T+
Sbjct: 719 SAVDTN 724



 Score = 41.2 bits (95), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 172/846 (20%), Positives = 315/846 (37%), Gaps = 160/846 (18%)

Query: 634  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP-------------------RSKAVDG-- 672
            + P ++V G + +I      +     L G+ P                    S   DG  
Sbjct: 151  LSPGTIVLGQITDISHQDLVLALPNNLVGYVPLTAVSDKLNERLEKLLKEDESDKEDGSD 210

Query: 673  ----QRADLSKTYYVGQSVRSNILDVNSETG----RITLSLKQSCCSSTDASFMQEHFLL 724
                + ADL   + VGQ +R+ I   + E      R+ LS++    ++          L 
Sbjct: 211  KDDFEDADLRDLFSVGQYLRACITATSGEGAKARKRLELSIEPKLVNTG---------LT 261

Query: 725  EEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQ 783
            + KI               V G I  SV+  + H     G+V+      + + GF+   +
Sbjct: 262  KRKIP--------------VNGMIQASVVSNEDH-----GLVMDLGLNDATLKGFLPKGE 302

Query: 784  LAG----ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREA 839
            L      + V+ G+V    I  +    R+V LS          + N+  +A         
Sbjct: 303  LGPNLLHSKVQEGAVFMCLITGLNSDGRIVKLSADHTKAGNLTKGNTLTEAPT------- 355

Query: 840  SKDLGVHQTVNAIVEIVKENY----------LVLSLPEYNHSIGYASVSDYNTQKFPQKQ 889
               + V     A+  +V EN           L+ +  +  HS      +D +     QK 
Sbjct: 356  ---IDVFLPGTAVDLLVTENTPNTITGKILGLIDATADAYHSGATEKATDVS-----QKH 407

Query: 890  FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-KKSSYD---VGSLVQ-A 944
             +  +     +   P S      + LL  +    T  S + K +K   D   + ++V+ A
Sbjct: 408  KIGSKVKARVLFTCPGSDPRKVSVSLLDHVLSLSTRMSGKPKERKPPIDLLPISTIVESA 467

Query: 945  EITEIKP-----LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK 999
            ++ ++ P      +L +K  +GF    HI+ ++DDK +++      FK+     ARI+  
Sbjct: 468  KVVKVAPSQGAFFDLGIKDVVGF---AHISRLSDDKVDILSEEAGAFKLDSKHKARIVG- 523

Query: 1000 SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV-DNEWALLTI 1058
             N  D     L++LS++  ++       +      D+  G+ V G V+K+  ++     +
Sbjct: 524  YNALDG----LFQLSLEKKVI------DQPFLRIEDIKAGEVVKGKVHKLFADKTGATAV 573

Query: 1059 SRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1116
              HL   +   + +       LQ  +R+F  G  VT  VL     +  + L L+  +  +
Sbjct: 574  LVHLSDGITGLVPEMHLADVRLQHPERKFREGLPVTVRVLYTEPARHQIHLTLK--KSLV 631

Query: 1117 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGV--GGLVVQIGPHLYGRVHFTELKNICV 1174
            + +    +N  M   I EG    G    IL  V   G  VQ    +   +   E+    +
Sbjct: 632  NSEVKPWTNYKM---ISEGATGPG----ILVNVRRNGATVQFYNRVRAWLPVAEMSEAFI 684

Query: 1175 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1234
                        D    +  GQ V  +VL +    R               +S  + S +
Sbjct: 685  -----------HDATRHFHVGQVVNVRVLSVDAKERQLL------------VSCKDPSAV 721

Query: 1235 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-- 1292
             T+ +           L+P  IV+G V   + +   + +   +   + L +L+DG  +  
Sbjct: 722  DTNKEAA------FNALNPGGIVKGTVVEKSDESATLDIGNGVKGILRLGHLTDGSEKKD 775

Query: 1293 -SPEKEFPIGKLVAGR-VLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIG 1349
             S  K+  +G  +    VL+    SK   V+ K S  + A  S++  ++ +L  G+ V G
Sbjct: 776  ISTMKKIRVGGTLEDLVVLAKHGKSKTATVSNKPSLRKDAQASKLAISIEDLQAGETVHG 835

Query: 1350 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
             ++ + S  +F+ + N  + G    S+L ED     +   R  + +  ++  VD  K   
Sbjct: 836  FVRGILSDKVFVELGN-GISGALFKSQLPEDMAAAPDFGLRKDQSITARVTHVDVGKGLF 894

Query: 1410 SLGMKS 1415
             L MKS
Sbjct: 895  WLSMKS 900


>gi|169614287|ref|XP_001800560.1| hypothetical protein SNOG_10281 [Phaeosphaeria nodorum SN15]
 gi|111061496|gb|EAT82616.1| hypothetical protein SNOG_10281 [Phaeosphaeria nodorum SN15]
          Length = 1794

 Score =  293 bits (750), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 235/907 (25%), Positives = 450/907 (49%), Gaps = 93/907 (10%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 996
            G+ ++  I  IK  ++ ++      GRI ++E+ D   ++ +     ++F++ QT+ A++
Sbjct: 935  GTELKVRIRSIKSTQINVELAENVQGRISVSELFDSWDDIPDKKRPTAHFQMNQTIKAKV 994

Query: 997  IAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
            + + +  + +          K+  ++L+ K   L  SE G  L  ++  V+ G     +V
Sbjct: 995  LGRHDARNHRFLPITHRSSNKTPTFDLTAKNEKLK-SE-GDVLSLDK--VTEGSSYVAFV 1050

Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
              + + +  + +S +++ ++  LD   +  +L   +  F +G A+   V +++     L 
Sbjct: 1051 NNIADRYVWVNLSANVRGRVDFLDLTDDLEQLSAVEENFPVGSALKVRVKAVDIAAGRLD 1110

Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1166
            L        ++ KT+ +++      +  G ++  R++KI      +VVQ+  ++   +  
Sbjct: 1111 LTA---ASTVTGKTLSLAD------LKVGYVLPARVTKIHDA--SIVVQVNENIAAPIFL 1159

Query: 1167 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1226
              L +         YD+ +    S Y +G  ++  V+E+             + +   G+
Sbjct: 1160 ERLAD--------DYDKAK---PSEYKQGDVLRVCVIEVD------------IPNKKLGL 1196

Query: 1227 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1286
            S+  S  LS+ +      +E    L  + +V+G++K +   G ++ L   ++  V +SNL
Sbjct: 1197 SARPSKVLSSTLPVKDPIIEDKAQLKVHQVVRGFIKKIADNGVYVRLGPHVETYVRVSNL 1256

Query: 1287 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1346
            SD Y++  +  F + +LV G+++S +   +  ++TLKTS +   +  EI    ++  G I
Sbjct: 1257 SDSYIKDWKSAFHVDQLVTGKIISNKEDQRNAQMTLKTS-TIQGNYVEILEFGDMKAGQI 1315

Query: 1347 VIGQIKRVESYGLFITIENTNLV-GLCHVSELSEDHV--DNIETIYRAGEKVKVKILKVD 1403
            V  ++++V  +G+F+ ++N+N V GLCHVS+L++  V  D I+ +Y+ G+ VK K++ V+
Sbjct: 1316 VTAKVRKVAEFGVFLVVDNSNNVSGLCHVSKLADKPVAKDKIKDMYKEGDIVKAKVVSVN 1375

Query: 1404 KEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES 1463
               RRI+  +K S  K   +  +   ++   +        +    +E   +  +D+DM S
Sbjct: 1376 PTARRINFSLKYSQVKGSEEEDEDMEDDSDVDVDMADDVDSDDGGIE---LDDEDVDMRS 1432

Query: 1464 -------EDGGSLVLAQIES-----RASVPPLEVNLDD---EQPDMDNGISQNQGHTDEA 1508
                   EDG   V ++ ES     +A+VP L  +  D      D D     +   +D A
Sbjct: 1433 VKSAESDEDGADEVESEAESETNATKAAVPGLSTSGFDWTGATLDFDQVERGHDSDSDGA 1492

Query: 1509 KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYM 1568
             T  ++ ++ A  KE    +          L+   P++  +FERL+   PNS+ +W++YM
Sbjct: 1493 ATKKKRKSKKATIKEDRTGD----------LDAFGPQSVADFERLLLGQPNSAEMWVRYM 1542

Query: 1569 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1628
             F   + ++EKAR IA RAL TIN REE EKL++W A  +LEN++ +  ++A+   F+ A
Sbjct: 1543 IFQRELNEIEKARQIARRALSTINPREEKEKLDVWTALLHLENDFVS--DDAIEATFKEA 1600

Query: 1629 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLK----Q 1682
             Q+ D +++H  ++ +Y    + + AD L   M+K   F      WL     L+      
Sbjct: 1601 CQHNDSREIHERMIKIYISASKFEKADNLYQSMMKNKSFTPDPNFWLGYATFLMDVLSPP 1660

Query: 1683 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDL 1740
                 +A++QRA  S+P  +H     + A LEFK  NG A+RGR++FEG++S +P + D+
Sbjct: 1661 SPTRARALLQRATQSVPSTQHRHLTQKFAALEFKSANGDAERGRTIFEGLVSTWPNKGDV 1720

Query: 1741 WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1800
            W +YL  E+  G  + +R LFER   +    + M  +FKK+ E+E+S G  + +E VK  
Sbjct: 1721 WDVYLSLELSHGTEENVRDLFERMSKVGKKKRAMG-VFKKWAEWEESKGNRKGVERVKAL 1779

Query: 1801 AMEYVES 1807
              ++ E+
Sbjct: 1780 EQQWREA 1786



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 202/767 (26%), Positives = 341/767 (44%), Gaps = 79/767 (10%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDP--------------IL 46
           + ++ G  + G V +V+ +D+V+ LP  L G   L   +D L+               I 
Sbjct: 146 KKLTPGTIILGQVTDVSHQDIVLALPNNLVGYVPLTAVSDKLNERLEKLLKEEEDGADIA 205

Query: 47  DNEIEANEDNLLPTIFHVGQLV-SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETV 105
           ++E E+ ED  L  +F +GQ + +C+    DD  +   ++++ LS+   L+ KGLS   +
Sbjct: 206 EDEDESFEDVHLEDMFTIGQYMRACVTATTDDSAR--ARKRLELSIEPKLVNKGLSKRKM 263

Query: 106 QEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSI 162
               ++ A V S EDHG ++  GL      GFLP+  L        V+ G +   +V  +
Sbjct: 264 PINSMVQASVVSNEDHGLVMDLGLDDSKIKGFLPKGELGPKIQHSKVQEGAVFMCLVTGL 323

Query: 163 DRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
           +   ++V LS+D          +   +  +ID+ +PG  V   V     + +    L   
Sbjct: 324 NSDGRIVKLSADHSKAGNLAKGNTLTEAPTIDVFLPGTAVDVLVADTTASTLTGKILGLA 383

Query: 221 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL------- 271
             T D +H   T    +    Y    KV ARILF  P S    VG++L  +++       
Sbjct: 384 DATADAYHSGATEKGGDVAQKYKIGSKVKARILFTCPDSDPARVGVSLLDHVVALSTRMS 443

Query: 272 ---HNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
                R P    + +  I D +KVV+V   LG   ++    V    +  IS ++++ V  
Sbjct: 444 GKPKERKPALDLMPISTIIDNAKVVKVAPALGAFFELGVRDVL--GFAHISRLSDDRVDV 501

Query: 328 LEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--I 382
           L +    YK GS  R RI+G+  ++GL    L+    +       D+KPG VVKGKV  +
Sbjct: 502 LSEDAGAYKLGSTHRARIVGYNSIDGLFQLSLEQKVLDQAFLRIEDIKPGEVVKGKVHKL 561

Query: 383 AVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--IT 437
             D  GA   +V    G+  L    H+++ ++  P +KF+ G  +  RVL  +  R  I 
Sbjct: 562 IADKKGASAVLVHLSDGITGLVTEMHLADVKLQHPERKFREGVAVTARVLYTEPARHQIQ 621

Query: 438 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 497
           +T KK+LV S +   + Y+  ++     G +  + K+G  VRFY  V  + P +E+    
Sbjct: 622 LTLKKSLVNSDVKPWTDYSMISEGSKGPGILVNVLKNGAKVRFYGDVTAWLPVAEMSEAF 681

Query: 498 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVD 553
             + +  +  GQVV  R++S     R++ +S      + P + +  + +  G++  G V 
Sbjct: 682 MDDATRHFTKGQVVNVRVISVNAKDRQMLVSCKDPAAVDPNKEAAFNALNPGNVTKGTV- 740

Query: 554 VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLDN--ES 609
           +   + V    +  G  KG +   HL D  E   +  MK  I+ G   + L+VL+    S
Sbjct: 741 LEKSDDVATLDLGHGV-KGVLRIGHLTDGSEKKDISTMKK-IRVGGTLEDLVVLNKLLRS 798

Query: 610 SNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 667
             + +S K SL   AQ  +L ++   +    +VHG+V  I+    FV F   ++G   +S
Sbjct: 799 KVVTVSNKPSLRKDAQASKLITNVEELTSGEIVHGFVRGILPDKVFVEFGNGVSGAVFKS 858

Query: 668 KAVD--------GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           +  +        G R D        QS+   I  V+   G   LS+K
Sbjct: 859 QMTEEILTAPNFGLRKD--------QSMTCRITYVDPTNGMFWLSMK 897



 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 162/373 (43%), Gaps = 43/373 (11%)

Query: 189 ISIDLLVPGMMVSTRVQSILEN-----GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 243
           + I+ + PG +V  +V  ++ +      V++      TG V   HL +     + +  + 
Sbjct: 543 LRIEDIKPGEVVKGKVHKLIADKKGASAVLVHLSDGITGLVTEMHLADV-KLQHPERKFR 601

Query: 244 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 303
           +   V AR+L+ +P    + LTL   L+++   P         D S +    +G G+L++
Sbjct: 602 EGVAVTARVLYTEPARHQIQLTLKKSLVNSDVKP-------WTDYSMISEGSKGPGILVN 654

Query: 304 IPSTPV------STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHL----- 348
           +              A++ +++++E  +    + + +G  V VR++      R +     
Sbjct: 655 VLKNGAKVRFYGDVTAWLPVAEMSEAFMDDATRHFTKGQVVNVRVISVNAKDRQMLVSCK 714

Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-- 406
           +  A    K +AF  L        PG V KG V+      A +    GVK +  + H+  
Sbjct: 715 DPAAVDPNKEAAFNAL-------NPGNVTKGTVLEKSDDVATLDLGHGVKGVLRIGHLTD 767

Query: 407 -SEFEIVKPGKKFKVGA---ELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATD 460
            SE + +   KK +VG    +LV     ++SK +TV++K +L K   A  ++++  E T 
Sbjct: 768 GSEKKDISTMKKIRVGGTLEDLVVLNKLLRSKVVTVSNKPSLRKDAQASKLITNVEELTS 827

Query: 461 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 520
             I HG++  I     FV F NGV G   +S++  +    P+      Q + CRI    P
Sbjct: 828 GEIVHGFVRGILPDKVFVEFGNGVSGAVFKSQMTEEILTAPNFGLRKDQSMTCRITYVDP 887

Query: 521 ASRRINLSFMMKP 533
            +    LS  ++P
Sbjct: 888 TNGMFWLSMKLEP 900



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 19/179 (10%)

Query: 1247 KIEDLSPNMIVQGYVKNVTS--KGC---FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            +IED+ P  +V+G V  + +  KG     + LS  +   V   +L+D  ++ PE++F  G
Sbjct: 544  RIEDIKPGEVVKGKVHKLIADKKGASAVLVHLSDGITGLVTEMHLADVKLQHPERKFREG 603

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVG-DIVIGQIK---RVE 1355
              V  RVL  EP   ++++TLK S  +S     ++ + +S    G  I++  +K   +V 
Sbjct: 604  VAVTARVLYTEPARHQIQLTLKKSLVNSDVKPWTDYSMISEGSKGPGILVNVLKNGAKVR 663

Query: 1356 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             YG        ++     V+E+SE  +D+    +  G+ V V+++ V+ + R++ +  K
Sbjct: 664  FYG--------DVTAWLPVAEMSEAFMDDATRHFTKGQVVNVRVISVNAKDRQMLVSCK 714



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 132/337 (39%), Gaps = 66/337 (19%)

Query: 505  YHVGQVVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVV 562
            + VG  +K R+ +   A+ R++L+     T   +S  DL K+G ++   V  +   ++VV
Sbjct: 1089 FPVGSALKVRVKAVDIAAGRLDLTAASTVTGKTLSLADL-KVGYVLPARVTKIHDASIVV 1147

Query: 563  YV---IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVL-------DNESSNL 612
             V   IA       I  E LAD  + A       KP  E+ Q  VL       D  +  L
Sbjct: 1148 QVNENIA-----APIFLERLADDYDKA-------KPS-EYKQGDVLRVCVIEVDIPNKKL 1194

Query: 613  LLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
             LSA+ S + S+  LP       D + +  + VV G++  I + G +VR    +  +   
Sbjct: 1195 GLSARPSKVLSST-LPVKDPIIEDKAQLKVHQVVRGFIKKIADNGVYVRLGPHVETYVRV 1253

Query: 667  SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 726
            S   D    D    ++V Q V   I+    +     ++LK S                  
Sbjct: 1254 SNLSDSYIKDWKSAFHVDQLVTGKIISNKEDQRNAQMTLKTSTIQG-------------- 1299

Query: 727  KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 786
                      N  E+        G ++  KV +  +FGV +  +  ++V G     +LA 
Sbjct: 1300 ----------NYVEILEFGDMKAGQIVTAKVRKVAEFGVFLVVDNSNNVSGLCHVSKLAD 1349

Query: 787  ATV---------ESGSVIQAAILDVAKAERLVDLSLK 814
              V         + G +++A ++ V    R ++ SLK
Sbjct: 1350 KPVAKDKIKDMYKEGDIVKAKVVSVNPTARRINFSLK 1386



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 152/690 (22%), Positives = 277/690 (40%), Gaps = 81/690 (11%)

Query: 749  IGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAG----ATVESGSVIQAAILDVA 803
            I S+++  V  + D G+V+    + S + GF+   +L      + V+ G+V    +  + 
Sbjct: 265  INSMVQASVVSNEDHGLVMDLGLDDSKIKGFLPKGELGPKIQHSKVQEGAVFMCLVTGLN 324

Query: 804  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT-VNAIVEIVKENYL- 861
               R+V LS          + N+  +A         + D+ +  T V+ +V     + L 
Sbjct: 325  SDGRIVKLSADHSKAGNLAKGNTLTEA--------PTIDVFLPGTAVDVLVADTTASTLT 376

Query: 862  --VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAI 919
              +L L +      Y S +        QK  +  +     +   P S  A   + LL  +
Sbjct: 377  GKILGLADATAD-AYHSGATEKGGDVAQKYKIGSKVKARILFTCPDSDPARVGVSLLDHV 435

Query: 920  SETETSSSKRAK-KKSSYD---VGSLV-QAEITEIKP-----LELRLKFGIGFHGRIHIT 969
                T  S + K +K + D   + +++  A++ ++ P      EL ++  +GF    HI+
Sbjct: 436  VALSTRMSGKPKERKPALDLMPISTIIDNAKVVKVAPALGAFFELGVRDVLGF---AHIS 492

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL 1029
             ++DD+ +V+      +K+G T  ARI+   N  D     L++LS++  +L       + 
Sbjct: 493  RLSDDRVDVLSEDAGAYKLGSTHRARIVG-YNSIDG----LFQLSLEQKVL------DQA 541

Query: 1030 LFEECDVSIGQRVTGYVYK-VDNEWALLTISRHLKAQL--FILDSAYEPSELQEFQRRFH 1086
                 D+  G+ V G V+K + ++     +  HL   +   + +      +LQ  +R+F 
Sbjct: 542  FLRIEDIKPGEVVKGKVHKLIADKKGASAVLVHLSDGITGLVTEMHLADVKLQHPERKFR 601

Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
             G AVT  VL     +  ++L L+      S    D+      + I EG    G +  +L
Sbjct: 602  EGVAVTARVLYTEPARHQIQLTLKK-----SLVNSDVKPWTDYSMISEGSKGPGILVNVL 656

Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS-GYDEGQFVKCKVLEI 1205
               G  V       YG        ++    P++   E   D  +  + +GQ V  +V+ +
Sbjct: 657  KN-GAKV-----RFYG--------DVTAWLPVAEMSEAFMDDATRHFTKGQVVNVRVISV 702

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
            +   R    V     +++D       + L+    T G  LEK +D++   +  G VK V 
Sbjct: 703  NAKDRQML-VSCKDPAAVDPNKEAAFNALNPGNVTKGTVLEKSDDVATLDLGHG-VKGVL 760

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
              G     S K D   +      G +E          LV   VL+    SK V V+ K S
Sbjct: 761  RIGHLTDGSEKKDISTMKKIRVGGTLED---------LV---VLNKLLRSKVVTVSNKPS 808

Query: 1326 DSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1384
              + A  S+ I N+  L  G+IV G ++ +    +F+   N  + G    S+++E+ +  
Sbjct: 809  LRKDAQASKLITNVEELTSGEIVHGFVRGILPDKVFVEFGN-GVSGAVFKSQMTEEILTA 867

Query: 1385 IETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
                 R  + +  +I  VD       L MK
Sbjct: 868  PNFGLRKDQSMTCRITYVDPTNGMFWLSMK 897



 Score = 41.2 bits (95), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 70/364 (19%), Positives = 144/364 (39%), Gaps = 36/364 (9%)

Query: 189  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT-TNWKNDYNQHKK 247
            +S+D +  G      V +I +  V ++      G VD   L +     +  + ++     
Sbjct: 1035 LSLDKVTEGSSYVAFVNNIADRYVWVNLSANVRGRVDFLDLTDDLEQLSAVEENFPVGSA 1094

Query: 248  VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVG--------DIYDQSKVVRVDRGLG 299
            +  R+  VD  +  + LT    +       + +KVG         I+D S VV+V+  + 
Sbjct: 1095 LKVRVKAVDIAAGRLDLTAASTVTGKTLSLADLKVGYVLPARVTKIHDASIVVQVNENIA 1154

Query: 300  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR------HLEGLAT 353
                         A + +  +A++  +    +YK+G  +RV ++          L    +
Sbjct: 1155 -------------APIFLERLADDYDKAKPSEYKQGDVLRVCVIEVDIPNKKLGLSARPS 1201

Query: 354  GILKAS--AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 411
             +L ++    + ++   + +K   VV+G +  +   G  V+    V+    + ++S+  I
Sbjct: 1202 KVLSSTLPVKDPIIEDKAQLKVHQVVRGFIKKIADNGVYVRLGPHVETYVRVSNLSDSYI 1261

Query: 412  VKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
                  F V   +  +++  K   +   +T K + ++     +  + +     I    + 
Sbjct: 1262 KDWKSAFHVDQLVTGKIISNKEDQRNAQMTLKTSTIQGNYVEILEFGDMKAGQIVTAKVR 1321

Query: 470  KIEKHGCF--VRFYNGVQGFAPRSELGLDPGCEPS--SMYHVGQVVKCRIMSSIPASRRI 525
            K+ + G F  V   N V G    S+L   P  +     MY  G +VK +++S  P +RRI
Sbjct: 1322 KVAEFGVFLVVDNSNNVSGLCHVSKLADKPVAKDKIKDMYKEGDIVKAKVVSVNPTARRI 1381

Query: 526  NLSF 529
            N S 
Sbjct: 1382 NFSL 1385



 Score = 41.2 bits (95), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 156/368 (42%), Gaps = 32/368 (8%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYI---LHFGLPSFTGFLP-RNNLAENSGI--DVKPGL 153
            LSL+ V EG    A+V +I D  Y+   L   +     FL   ++L + S +  +   G 
Sbjct: 1035 LSLDKVTEGSSYVAFVNNIADR-YVWVNLSANVRGRVDFLDLTDDLEQLSAVEENFPVGS 1093

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
             L+  V+++D     + L     T +  VT   K +S+  L  G ++  RV  I +  ++
Sbjct: 1094 ALKVRVKAVDIAAGRLDL-----TAASTVTG--KTLSLADLKVGYVLPARVTKIHDASIV 1146

Query: 214  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 273
            +         + +  L + +      ++Y Q   +   ++ VD  ++ +GL+  P  + +
Sbjct: 1147 VQVNENIAAPIFLERLADDYDKAK-PSEYKQGDVLRVCVIEVDIPNKKLGLSARPSKVLS 1205

Query: 274  RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVAEEEVRK 327
               P    + +   Q KV +V R  G +  I    V          YV +S++++  ++ 
Sbjct: 1206 STLPVKDPIIEDKAQLKVHQVVR--GFIKKIADNGVYVRLGPHVETYVRVSNLSDSYIKD 1263

Query: 328  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 384
             +  +     V  +I+  +  +  A   LK S  +G    +    D+K G +V  KV  V
Sbjct: 1264 WKSAFHVDQLVTGKIISNKEDQRNAQMTLKTSTIQGNYVEILEFGDMKAGQIVTAKVRKV 1323

Query: 385  DSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAELVFRVLGVK--SKRITV 438
              FG   +V     V  LC +  +++  + K   K  +K G  +  +V+ V   ++RI  
Sbjct: 1324 AEFGVFLVVDNSNNVSGLCHVSKLADKPVAKDKIKDMYKEGDIVKAKVVSVNPTARRINF 1383

Query: 439  THKKTLVK 446
            + K + VK
Sbjct: 1384 SLKYSQVK 1391


>gi|427793247|gb|JAA62075.1| Putative rrna processing protein rrp5, partial [Rhipicephalus
            pulchellus]
          Length = 1840

 Score =  292 bits (748), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 190/518 (36%), Positives = 278/518 (53%), Gaps = 72/518 (13%)

Query: 1322 LKTSDSRTASQS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
            L T +SR   +S       EI  LS+L VG  + G +K V  +G F+T+    +VGL  +
Sbjct: 1361 LSTRESRLHPESCKDVEDKEIVALSSLTVGTTLRGFVKTVNKHGCFVTV-GCGVVGLIPL 1419

Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1434
            S+L   H+       + GE V V + K+   +RR+ LG+      N              
Sbjct: 1420 SKLPA-HLQRSHKAMKIGELVSVVVKKIQASERRLFLGLVHRMQANT------------- 1465

Query: 1435 EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQP-- 1492
                   +  R   L NSS      D   +                   ++ LDD  P  
Sbjct: 1466 -------TLPRKRKLSNSSTDEPIFDSSEK-------------------KIKLDDPLPRL 1499

Query: 1493 DMDNGISQN-QGHTDEAKTIDE-----------------KNNRHAKKKEKEEREQEIRAA 1534
            ++D G S + +   D  K ++E                 K +R   ++E+E+ E ++R  
Sbjct: 1500 NLDEGFSWDVEATPDLGKLLEERPAVNSSDDEDGDDGSAKKSRKEIRQEREQAEAQLRKK 1559

Query: 1535 EERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
            E  L++    P T D+F+RLV  SPNSS VW++YMAF L  A++EKAR++A RAL  I+ 
Sbjct: 1560 ERMLVDPSREPETVDDFDRLVLVSPNSSIVWLRYMAFHLRQAEIEKARAVARRALSCIDF 1619

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1653
            REE EKLN+W A  NLE+ YG   ++++  VF+ ALQ+ +P KV++ L  +Y    + + 
Sbjct: 1620 REEQEKLNVWTALLNLEHLYGT--QDSLDSVFKEALQFNEPLKVYMHLAQIYVEGNKREQ 1677

Query: 1654 ADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAI 1712
            A++L  +M+ KFK    VWL      +K  Q E  +A++QRAL SLP  +HI  I++ A 
Sbjct: 1678 AEQLYKQMLNKFKQHADVWLSFGLFYMKCGQVEACRALLQRALKSLPSREHIVLITKFAQ 1737

Query: 1713 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1772
            +EFK G A+RG+SMF+ IL  YPKRTDLW +Y+D   +LGDVD  R  FE+A SL+L PK
Sbjct: 1738 MEFKYGDAERGQSMFDSILDNYPKRTDLWIVYVDILTKLGDVDNARKTFEKATSLNLNPK 1797

Query: 1773 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            KMK LFKK+L++EK  G+    E VKQ+A++YV+   A
Sbjct: 1798 KMKSLFKKWLDFEKEHGDASLCEVVKQRAVQYVQERTA 1835



 Score =  198 bits (503), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 219/908 (24%), Positives = 394/908 (43%), Gaps = 83/908 (9%)

Query: 6   ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP---ILDNEIEANEDN---LLP 59
           ++ G+ + G V +V E  L + LPG + G     +   P   +L    +  +D    +LP
Sbjct: 86  LAEGLVVLGRVQQVQEFGLRVSLPGAITGRVSLTNISQPYSLLLRQFAQGVQDRTTEILP 145

Query: 60  --TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
              +F  GQ V C V+     +    K  + LSL  + +   ++   +Q+GMVL A V S
Sbjct: 146 LQKLFQEGQTVVCKVIAAAPVEWGSSKVSVELSLDPAAVNASMTPSVLQKGMVLQAAVSS 205

Query: 118 IEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLS 172
           IEDHGY +  G+   T FL +          N+G  +  G L+   V +     + + L+
Sbjct: 206 IEDHGYTMDCGVDGVTAFLSQAEATPFIKQCNAGHALAVGQLVPCAVLTNTGGGRALQLT 265

Query: 173 SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 232
           + P TV+  +  +L+  S+D ++PG      V      G+++S+     G     H  + 
Sbjct: 266 ARPSTVNAPL--ELENFSLDYVLPGFRAEVTVIESQSEGLVVSW----NGIEACVHRSHL 319

Query: 233 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYD----- 287
               +   D    + +   +L+V P      L   PYL   + P S    G I       
Sbjct: 320 PGPWDSPEDITVGQTLVGTLLYVQP------LVQRPYLSLQK-PSSRAMFGAIRPGALLE 372

Query: 288 -QSKVVRVDRG-LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 345
             +KVV ++ G + L L+    P    A      VA+E+V         G  +  R++  
Sbjct: 373 GAAKVVAIEAGAVHLRLE----PSGLRALCPRPLVADEDVEDARDFVTAGERLSCRVMAL 428

Query: 346 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 405
            +++ +    LK S       T   + PG   +  V  +   G +V     +     + H
Sbjct: 429 SYMDKVVVVSLKKSMLSEKYVTPDALVPGAKFECTVRQMQRSGILVSLSPWMAGFIQMLH 488

Query: 406 MSEFEIVKPGK-KFKVGAELVFRVLGVK----SKRITVTHKKTLVKSKLAILSSYAEATD 460
           +S      PG+ +  +G+ +  R+L V       R+ +T ++ LV SK  I++SY +A  
Sbjct: 489 VS-----GPGEEQPTLGSRVRCRLLNVDRSFDPPRLLLTCRRALVTSKRPIITSYDDAIP 543

Query: 461 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 520
             +T G I ++   G  V FYNG++G+ P  E+    G   +  Y  G+VV CR++   P
Sbjct: 544 GKLTEGLIVRVTPQGLLVTFYNGIKGWVPSREMP-HSGHGTNVNYTEGKVVTCRVVDCQP 602

Query: 521 ASRRINLSFMMKPTRVSEDD--------------LVKLGSLVSGVVDVVTPNAVVVYVIA 566
           +  R+ LS  + P    E++               +++G+LVSG V+        V +  
Sbjct: 603 SEERLTLSLKLAPKGEQEEEKQSAQEVTMSMKSGAMEVGTLVSGCVEAKVKGGFTVRL-- 660

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +     ++P +HL+D   H   ++ ++  G     L++  N S +L++S + SL+N+AQ+
Sbjct: 661 RTGESASLPKQHLSDFEPHCVRLQQLLAEGTNLTNLVIF-NSSESLVVSRRTSLVNAAQR 719

Query: 627 --LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT-YYV 683
             L S    + P ++V G +   +  G  +   G + GF P     D    D SK+ + +
Sbjct: 720 GLLVSHFEDMAPGTLVFGVLLAFVRHGMLLELPGGIRGFVPLKDVADEFITDASKSGFSI 779

Query: 684 GQSVRSNILDVNSETGRITLSLK-QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 742
           GQ +   +  V+SE  ++ LS   +SC      S M       E +A   + +   S L+
Sbjct: 780 GQCLVGRVTKVDSEKQQVWLSTSMRSCGEKNFGSTM-------ECLAAQLTDEELISRLE 832

Query: 743 WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV 802
             +   +GS+I   V + ++   +V  +   +V    T   + G  + SGS  +A +L  
Sbjct: 833 QTQVPNVGSIIRVTVQDVDEENQLVHCKIAENVLSG-TAETIPGRNIASGSTHEAVVLHC 891

Query: 803 AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLV 862
           + A   V+L L    +   R  ++ ++ +   R+ ++ + L  H   N  V ++   +L 
Sbjct: 892 STAHSNVELCLDPQVV---RSVSAAKRTKPVLRRIQSGRVL--HLKPNHAVVLLHSGHLC 946

Query: 863 LSLPEYNH 870
           L +P  +H
Sbjct: 947 L-VPTKSH 953



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 161/381 (42%), Gaps = 73/381 (19%)

Query: 1077 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1136
            ++QEF  R  +  A+TG V S+    +   L+LR F  G+ D+T +I    +Q    EG 
Sbjct: 98   QVQEFGLRVSLPGAITGRV-SLTNISQPYSLLLRQFAQGVQDRTTEILP--LQKLFQEGQ 154

Query: 1137 IVGGRI---------------------SKILSGVGGLVVQIGPHLYGRVHFTELKNI--- 1172
             V  ++                     + + + +   V+Q G  L   V   E       
Sbjct: 155  TVVCKVIAAAPVEWGSSKVSVELSLDPAAVNASMTPSVLQKGMVLQAAVSSIEDHGYTMD 214

Query: 1173 CVSDPLSGY-DEGQFDPL-----SGYD--EGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1224
            C  D ++ +  + +  P      +G+    GQ V C VL       G   ++L+ R S  
Sbjct: 215  CGVDGVTAFLSQAEATPFIKQCNAGHALAVGQLVPCAVLT---NTGGGRALQLTARPS-- 269

Query: 1225 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-----SKGCFIMLSRKLDA 1279
                         V+ P   LE +E+ S + ++ G+   VT     S+G  ++    ++A
Sbjct: 270  ------------TVNAP---LE-LENFSLDYVLPGFRAEVTVIESQSEG-LVVSWNGIEA 312

Query: 1280 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1339
             V  S+L  G  +SPE +  +G+ + G +L V+PL +R  ++L+   SR           
Sbjct: 313  CVHRSHLP-GPWDSPE-DITVGQTLVGTLLYVQPLVQRPYLSLQKPSSRAM-------FG 363

Query: 1340 NLHVGDIVIGQIK--RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
             +  G ++ G  K   +E+  + + +E + L  LC    ++++ V++      AGE++  
Sbjct: 364  AIRPGALLEGAAKVVAIEAGAVHLRLEPSGLRALCPRPLVADEDVEDARDFVTAGERLSC 423

Query: 1398 KILKVDKEKRRISLGMKSSYF 1418
            +++ +    + + + +K S  
Sbjct: 424  RVMALSYMDKVVVVSLKKSML 444



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 74/389 (19%), Positives = 149/389 (38%), Gaps = 70/389 (17%)

Query: 942  VQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 1001
            V A +  ++ L+L++    G+ GR+H++ + D+     E+    F+ G  +   +I +  
Sbjct: 1123 VMAIVRSVEKLQLKITLENGYKGRVHVSFI-DENPKEGESPLKRFEPGDQLEVYVIER-- 1179

Query: 1002 KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV----------SIGQRVTGYVYKVDN 1051
                         + P       I  +  F EC +          + G  V GY      
Sbjct: 1180 -------------VIPLHSRALAITGRRNFCECSLFPAEKNEFAPAPGSEVIGYFSHFSE 1226

Query: 1052 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1111
               +  ++ +   +L +L+    PS L         G+AV   VL  ++       V+  
Sbjct: 1227 GSLVFALTHNKMGRLPVLNMDLPPSRLGYIHTELKAGQAVKVTVLRADESS-----VVEL 1281

Query: 1112 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1171
             Q G++  +VD              +V G +    +GVG  V          +       
Sbjct: 1282 SQLGVTTLSVD-------------SVVNGYVVSARAGVGACV---------SLPLGHRGT 1319

Query: 1172 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1231
            I ++D    + +     ++ Y + ++++C +++I      T+H+            ST  
Sbjct: 1320 ISITDICDDFSQAA-TLMANYIQERYLRCYIIDIDSET-NTYHL------------STRE 1365

Query: 1232 SDLSTDV--DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1289
            S L  +   D   K +  +  L+    ++G+VK V   GCF+ +   +   + LS L   
Sbjct: 1366 SRLHPESCKDVEDKEIVALSSLTVGTTLRGFVKTVNKHGCFVTVGCGVVGLIPLSKLP-A 1424

Query: 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRV 1318
            +++   K   IG+LV+  V  ++   +R+
Sbjct: 1425 HLQRSHKAMKIGELVSVVVKKIQASERRL 1453


>gi|335310117|ref|XP_001926809.2| PREDICTED: protein RRP5 homolog [Sus scrofa]
          Length = 1863

 Score =  292 bits (747), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/305 (49%), Positives = 214/305 (70%), Gaps = 11/305 (3%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERL--LEK---DAPRTP---DEFERLVRSSPNSSFV 1563
            DEK  +  KKK K+ERE E + AE+ L  LE+   D  R P   D+F+RLV SSPNSS +
Sbjct: 1554 DEKPEQATKKKSKKERELEKQKAEKELSRLEEALMDPGRQPESADDFDRLVLSSPNSSIL 1613

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1614 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1671

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1683
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1672 VFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRG 1731

Query: 1684 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742
            Q G    V+QRAL  LP+ +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1732 QAGASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1791

Query: 1743 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1792 VYIDMIIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1851

Query: 1803 EYVES 1807
            EYVE+
Sbjct: 1852 EYVEA 1856


>gi|449675702|ref|XP_002169396.2| PREDICTED: rRNA biogenesis protein RRP5-like [Hydra magnipapillata]
          Length = 967

 Score =  290 bits (742), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 213/711 (29%), Positives = 358/711 (50%), Gaps = 62/711 (8%)

Query: 6   ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA------LDPILDNEIEANEDNLLP 59
           IS G+ + G V ++N+K+ +I LP GL G     D       +D I D E + N   L  
Sbjct: 71  ISKGLLILGCVRDINKKEYIIGLPNGLSGYVSFVDVQSFLQEVDYIEDEENQKNAI-LTS 129

Query: 60  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 119
           ++  VGQLV  +V ++D DK   G RKI LS+  S +  G+    +   +VL   ++S+E
Sbjct: 130 SLLSVGQLVPVVVKKIDSDKH--GYRKILLSIFPSDINGGVKANALHNNLVLWGMIQSME 187

Query: 120 DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV- 178
           DHG+++ FG   F+GFLP       +  D+K G L+      +   +KV+ +S D + + 
Sbjct: 188 DHGFVVSFGNKEFSGFLP------GTDSDLKVGQLMWFATTKVSSNKKVLTVSLDHNIII 241

Query: 179 -SKCVTKDLKGISIDLLVPGMMVSTRVQSILEN-GVMLSFLTYFTGTVDIFHLQNTFPTT 236
             KC+ K  K  S   L+PG +V  + +   EN G  L F     G+ D F  +   P  
Sbjct: 242 KMKCLQKSAKFTS---LMPGHLVDFKTEKKSENMGFGLIF-----GSFDAFVDKRHVPL- 292

Query: 237 NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP----PSHVKVGDIYDQSKVV 292
           + +    +H+KV ARI+ +DP ++ +G+TL P L+  + P     +H  VG++  + +VV
Sbjct: 293 DKEIVLIEHEKVEARIIHIDPNTKKIGVTLLPELI--KFPKNILSNHHSVGEVL-ECQVV 349

Query: 293 RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 352
           R D   GL + +     +T  YV IS   +    KL K +K G+  + R+LGF  ++   
Sbjct: 350 RSDSSSGLYMKMSE---NTYGYVHISQTNDNRTTKLGKTFKVGTTHKCRVLGFSAMDSAY 406

Query: 353 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 412
           T  +K S  E    ++ D+KPGM++ G ++ ++ FG IV+    +KALCP  H+++  + 
Sbjct: 407 TLTMKKSILEKQFLSYEDLKPGMLISGTIVTLEDFGCIVKITDNIKALCPRLHLADINLK 466

Query: 413 KPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 470
            P KKF  G +L FRVL  K   + + VTHKKTLV S   I+SSY       + HG++T 
Sbjct: 467 HPEKKFVEGKKLHFRVLRCKPSERSLIVTHKKTLVNSMFPIVSSYNVDVGT-VAHGFVTA 525

Query: 471 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS-- 528
           ++  G FV FYN V+   P+SE  L PG    + +++GQV++C ++S   ++ ++ +S  
Sbjct: 526 VKSFGVFVAFYNNVKALLPKSESRLAPGATVETNFYIGQVLQCTVISVDASAEKMVVSLK 585

Query: 529 ----FMMKPTRVSEDDLVKLGSLVSG--------VVDVVTPNAVVVYVIAKGYSKGTIPT 576
               F+ +   ++++  +++G +V G        +++V   N ++V +  K  S   I  
Sbjct: 586 HNDPFIQEKLTINQEKALEIGDVVHGHFEKLSGDIINVKLENNLLVNINQKHLSDFEIIN 645

Query: 577 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
           E  A+ L+ A+          +F  L V + +      +     +   +++ S  + +  
Sbjct: 646 EQWANILKTAS-------NDLQFQDLFVYEKDKKLQTFNTSLKQVIHGRKITS-FNELKV 697

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 687
             V  G V +++  G FV     + G  P     D   +D S+ Y V QS+
Sbjct: 698 GMVFGGTVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDPSEMYSVHQSL 748



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 136/302 (45%), Gaps = 17/302 (5%)

Query: 433 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 492
           +K+I VT    L+K    ILS++  +   ++    +      G +++      G+   S+
Sbjct: 315 TKKIGVTLLPELIKFPKNILSNH-HSVGEVLECQVVRSDSSSGLYMKMSENTYGYVHISQ 373

Query: 493 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVS 549
              +   +    + VG   KCR++          L+    +++   +S +DL K G L+S
Sbjct: 374 TNDNRTTKLGKTFKVGTTHKCRVLGFSAMDSAYTLTMKKSILEKQFLSYEDL-KPGMLIS 432

Query: 550 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE 608
           G +  +     +V +      K   P  HLAD +L+H    K V      F  L    +E
Sbjct: 433 GTIVTLEDFGCIVKITDN--IKALCPRLHLADINLKHPE-KKFVEGKKLHFRVLRCKPSE 489

Query: 609 SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
            S L+++ K +L+NS   + S + ++   +V HG+V  +   G FV F   +    P+S+
Sbjct: 490 RS-LIVTHKKTLVNSMFPIVS-SYNVDVGTVAHGFVTAVKSFGVFVAFYNNVKALLPKSE 547

Query: 669 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 728
           +     A +   +Y+GQ ++  ++ V++   ++ +SLK       +  F+QE   + ++ 
Sbjct: 548 SRLAPGATVETNFYIGQVLQCTVISVDASAEKMVVSLKH------NDPFIQEKLTINQEK 601

Query: 729 AM 730
           A+
Sbjct: 602 AL 603



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 4/204 (1%)

Query: 1212 TFHVELSLRSSLDGMSSTNSS-DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
            TF V  + +  + G S+ +S+  L+       K     EDL P M++ G +  +   GC 
Sbjct: 385  TFKVGTTHKCRVLGFSAMDSAYTLTMKKSILEKQFLSYEDLKPGMLISGTIVTLEDFGCI 444

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            + ++  + A     +L+D  ++ PEK+F  GK +  RVL  +P  + + VT K   +   
Sbjct: 445  VKITDNIKALCPRLHLADINLKHPEKKFVEGKKLHFRVLRCKPSERSLIVTHKK--TLVN 502

Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1390
            S   I +  N+ VG +  G +  V+S+G+F+   N N+  L   SE        +ET + 
Sbjct: 503  SMFPIVSSYNVDVGTVAHGFVTAVKSFGVFVAFYN-NVKALLPKSESRLAPGATVETNFY 561

Query: 1391 AGEKVKVKILKVDKEKRRISLGMK 1414
             G+ ++  ++ VD    ++ + +K
Sbjct: 562  IGQVLQCTVISVDASAEKMVVSLK 585



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 127/310 (40%), Gaps = 35/310 (11%)

Query: 405 HMSEFEIVKP--GKKFKVGA-ELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEAT 459
           H+S+FEI+        K  + +L F+ L V  K   +    T +K  +    ++S+ E  
Sbjct: 637 HLSDFEIINEQWANILKTASNDLQFQDLFVYEKDKKLQTFNTSLKQVIHGRKITSFNELK 696

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
             ++  G ++ +  +G FV    GV G  P   L  +   +PS MY V Q +  ++ +S 
Sbjct: 697 VGMVFGGTVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDPSEMYSVHQSLIVKVKTSA 756

Query: 520 PAS------RRI--------NLSFMMKPTRVSEDDLVKLGSLVSG--------VVDVVTP 557
                    R +        N  F+ +   ++++  +++G +V G        +++V   
Sbjct: 757 KVCLLGKNVRSVFGSLGIEHNDPFIQEKLTINQEKALEIGDVVHGHFEKLSGDIINVKLE 816

Query: 558 NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 617
           N ++V +  K  S   I  E  A+ L+ A+          +F  L V + +      +  
Sbjct: 817 NNLLVNINQKHLSDFEIINEQWANILKTAS-------NDLQFQDLFVYEKDKKLQTFNTS 869

Query: 618 YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
              +   +++ S  + +    V  G V +++  G FV     + G  P     D   +D 
Sbjct: 870 LKQVIHGRKITS-FNELKVGMVFGGTVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDP 928

Query: 678 SKTYYVGQSV 687
           S+ Y V QS+
Sbjct: 929 SEMYSVHQSL 938



 Score = 45.1 bits (105), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 14/137 (10%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLL----SNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
            +  G+V  V S G F+      + K LL    S L+ G   + E  F IG+++   V+SV
Sbjct: 518  VAHGFVTAVKSFGVFVAFYN--NVKALLPKSESRLAPG--ATVETNFYIGQVLQCTVISV 573

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1371
            +  ++++ V+LK +D     +  IN    L +GD+V G  +++    + + +EN  LV  
Sbjct: 574  DASAEKMVVSLKHNDPFIQEKLTINQEKALEIGDVVHGHFEKLSGDIINVKLENNLLV-- 631

Query: 1372 CHVSELSEDHVDNIETI 1388
                 +++ H+ + E I
Sbjct: 632  ----NINQKHLSDFEII 644



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            G+ +    +L   M+  G V +V S G F+ +S  ++  V   +L+D Y+  P + + + 
Sbjct: 686  GRKITSFNELKVGMVFGGTVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDPSEMYSVH 745

Query: 1302 KLVAGRVLS---VEPLSKRVE-----VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1353
            + +  +V +   V  L K V      + ++ +D     +  IN    L +GD+V G  ++
Sbjct: 746  QSLIVKVKTSAKVCLLGKNVRSVFGSLGIEHNDPFIQEKLTINQEKALEIGDVVHGHFEK 805

Query: 1354 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
            +    + + +EN  LV       +++ H+ + E I
Sbjct: 806  LSGDIINVKLENNLLV------NINQKHLSDFEII 834


>gi|332212080|ref|XP_003255151.1| PREDICTED: protein RRP5 homolog [Nomascus leucogenys]
          Length = 1804

 Score =  290 bits (741), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 148/331 (44%), Positives = 223/331 (67%), Gaps = 16/331 (4%)

Query: 1479 SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERL 1538
            ++PPL  + D E+ +  +  +Q            +K ++  ++ EK++ E+E+   EE L
Sbjct: 1481 ALPPLAESSDSEEDEKPHQATQ------------KKKSKKERELEKQKAEKELSRIEEAL 1528

Query: 1539 LEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1597
            ++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE 
Sbjct: 1529 MDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQ 1588

Query: 1598 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1657
            EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL
Sbjct: 1589 EKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGEL 1646

Query: 1658 LYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFK 1716
              +M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+
Sbjct: 1647 YNRMLKRFRQEKAVWIKYGAFLLRRSQAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQ 1706

Query: 1717 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1776
             G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF
Sbjct: 1707 LGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKF 1766

Query: 1777 LFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1767 FFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1797



 Score =  274 bits (701), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 284/545 (52%), Gaps = 30/545 (5%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
           +++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L    
Sbjct: 78  ESLCEGMRILGCVKEVNELELVISLPNGLKGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137

Query: 58  -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
            LP +F  G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 138 HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195

Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
           S+EDHGY++  G+     FLP     E     N G  +K G  L  +V  +     VV L
Sbjct: 196 SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255

Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
           S+    VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL  
Sbjct: 256 STGHSEVSTAIATEEQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLD- 314

Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV---GDIYDQ 288
                           V A IL + P +R V L+L P  L    P + +     G + D 
Sbjct: 315 -------PXXXXXXXXVRACILCIHPRTRVVRLSLRPIFLQPGRPLTRLSCQNFGAVLDD 367

Query: 289 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
             V    +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  +
Sbjct: 368 VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 424

Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
           + LA   L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++
Sbjct: 425 DELALLSLRTSIIEAQYLRYHDIQPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 484

Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
             +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG
Sbjct: 485 ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 544

Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
           +I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ 
Sbjct: 545 FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERML 604

Query: 527 LSFMM 531
           LSF +
Sbjct: 605 LSFKL 609



 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 248/1044 (23%), Positives = 421/1044 (40%), Gaps = 193/1044 (18%)

Query: 388  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--------LGVKSKRITVT 439
            GA  +   GV A   L H+S+ + V   + FK G     R+        L + S R ++ 
Sbjct: 378  GATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSII 437

Query: 440  HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 499
              + L          Y +     +  G +  I+ +G  V+    ++G  P   L      
Sbjct: 438  EAQYL---------RYHDIQPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMK 488

Query: 500  EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV-------KLGSLVSGVV 552
             P   YH+G  VKCR++   P ++++ ++  +K T +     V       K G    G +
Sbjct: 489  NPEKKYHIGDEVKCRVLLCDPEAKKLMMT--LKKTLIESKLPVITCYADAKPGLQTHGFI 546

Query: 553  DVVTPNAVVV--YVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 609
              V     +V  Y   +G   K  + TE++ D  E       V+K       + VL+ E 
Sbjct: 547  IRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDP-ERVFYTGQVVK-------VAVLNCEP 598

Query: 610  SN--LLLSAKYS------------------LINSAQ---------------QLPSDASHI 634
            S   +LLS K S                   IN  Q               Q P + S I
Sbjct: 599  SKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLLCRKPALVSTVEGGQDPKNFSEI 658

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 659  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 718

Query: 695  NSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIG 750
            + E  R+ LSL+ S C   D +      L +  E++  ++S  S  +   ++ +     G
Sbjct: 719  DEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPG 778

Query: 751  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
              ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V
Sbjct: 779  MFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEV 838

Query: 810  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
             +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  
Sbjct: 839  HVSLHQDLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETG 880

Query: 870  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 881  HLAAFSLSSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPT 938

Query: 929  RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 939  RKDSETVDEDEEVDPSLTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHAS 998

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIK 1016
             + DD         +  K+G+TVTAR+I      DM K+F +             ELS++
Sbjct: 999  HILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVR 1053

Query: 1017 PSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFIL 1069
            PS L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L
Sbjct: 1054 PSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLL 1113

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
             ++     L+   ++F +G+A+   V+  +  K  L L L             I    ++
Sbjct: 1114 LTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKLE 1160

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                EG++  GR+ K+     GL V      +G++    + ++  S     Y E    PL
Sbjct: 1161 ----EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTASIFHMSDS-----YSE---TPL 1204

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
              +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+
Sbjct: 1205 EDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQ 1251

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKL 1303
            D+    +++GYV ++   G F  L   +      SN+S     SP K+       P GKL
Sbjct: 1252 DIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSNVSQ---HSPSKKALYNKHLPEGKL 1308

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDS 1327
            +  RVL +      VE++    D+
Sbjct: 1309 LTARVLRLNHQKNLVELSFLPGDT 1332



 Score = 79.7 bits (195), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 137/600 (22%), Positives = 245/600 (40%), Gaps = 66/600 (11%)

Query: 254 FVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 313
             D   ++V L+LNP  ++       +K G +   +     D G   L+DI      T A
Sbjct: 158 ITDRGKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHGY--LVDIGVD--GTRA 213

Query: 314 YVTISDVAEEEVRKLEK--KYKEG---SCVRVRILGFRHLEGLATG---ILKASAFEGLV 365
           ++ +   A+E +R+  K  K K G   +C+  ++ G   +  L+TG   +  A A E   
Sbjct: 214 FLPLLK-AQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSTGHSEVSTAIATEEQS 272

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           +  +++ PG+VVK +V  V  FG  + F      +    H+             V A ++
Sbjct: 273 WNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPXXXXX---XXXVRACIL 329

Query: 426 F-----RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 480
                 RV+ +  + I +   + L +       ++    D +   G+    +K G   R 
Sbjct: 330 CIHPRTRVVRLSLRPIFLQPGRPLTRLSC---QNFGAVLDDVPVQGFF---KKAGATFRL 383

Query: 481 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
            +GV  +A  S L           +  G   KCRI   I  S+   L+ +   T + E  
Sbjct: 384 KDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRI---IDYSQMDELALLSLRTSIIEAQ 440

Query: 541 LVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
            ++      G++V G V  +    ++V V  +   +G +P  HLAD L     MK+  K 
Sbjct: 441 YLRYHDIQPGAVVKGTVLTIKSYGMLVKVGEQ--MRGLVPPMHLADIL-----MKNPEKK 493

Query: 596 GYEFDQL----LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 651
            +  D++    L+ D E+  L+++ K +LI S   + +  +   P    HG++  + + G
Sbjct: 494 YHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVKDYG 553

Query: 652 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC-- 709
           C V+F   + G  P+ +       D  + +Y GQ V+  +L+      R+ LS K S   
Sbjct: 554 CIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLSSDP 613

Query: 710 --------CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 761
                    S      +    LL  K A++ S+   G + K       G ++ G V    
Sbjct: 614 EPKKEPAGHSQKKGKAINIGQLLCRKPALV-STVEGGQDPKNFSEIHPGMLLIGFVKSIK 672

Query: 762 DFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 814
           D+GV + F   S + G      ++   V S       G  + A + +V + ++ + LSL+
Sbjct: 673 DYGVFIQFP--SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLR 730



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 148/335 (44%), Gaps = 57/335 (17%)

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRISKI 1145
            V   +L I+   +++RL LRP           +S  N    + +  + G     G   ++
Sbjct: 324  VRACILCIHPRTRVVRLSLRPIFLQPGRPLTRLSCQNFGAVLDDVPVQGFFKKAGATFRL 383

Query: 1146 LSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1204
              GV           Y R+ H ++ KN+             F+P   +  G   KC++++
Sbjct: 384  KDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRIID 420

Query: 1205 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1264
             S+         LSLR+S+                   ++L +  D+ P  +V+G V  +
Sbjct: 421  YSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIQPGAVVKGTVLTI 460

Query: 1265 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
             S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK 
Sbjct: 461  KSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK- 519

Query: 1325 SDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1381
               +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS ++
Sbjct: 520  ---KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEY 575

Query: 1382 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 576  IPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 610



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 130/317 (41%), Gaps = 63/317 (19%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            I  G +V G +  I S   G++V++G  + G V    L +I + +P   Y  G       
Sbjct: 447  IQPGAVVKGTVLTIKSY--GMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIG------- 497

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
             DE   VKC+VL      +    + ++L+ +L              +++    +    D 
Sbjct: 498  -DE---VKCRVLLCDPEAK---KLMMTLKKTL--------------IESKLPVITCYADA 536

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
             P +   G++  V   GC +     +   V    LS  Y+  PE+ F  G++V   VL+ 
Sbjct: 537  KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNC 596

Query: 1312 EPLSKRVEVTLKTSD--------------------------------SRTASQSEINNLS 1339
            EP  +R+ ++ K S                                 S      +  N S
Sbjct: 597  EPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLLCRKPALVSTVEGGQDPKNFS 656

Query: 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1399
             +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V  K+
Sbjct: 657  EIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKV 715

Query: 1400 LKVDKEKRRISLGMKSS 1416
              VD+EK+R+ L ++ S
Sbjct: 716  TNVDEEKQRMLLSLRLS 732



 Score = 41.2 bits (95), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 74/136 (54%), Gaps = 13/136 (9%)

Query: 1285 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS-----EINNLS 1339
            ++SD Y E+P ++F   K+V   +LS       + ++L++S +   ++S     EIN++ 
Sbjct: 1194 HMSDSYSETPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPETKSKVEDPEINSIQ 1251

Query: 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA----GEKV 1395
            ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  + + +Y      G+ +
Sbjct: 1252 DIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSNVSQ-HSPSKKALYNKHLPEGKLL 1309

Query: 1396 KVKILKVDKEKRRISL 1411
              ++L+++ +K  + L
Sbjct: 1310 TARVLRLNHQKNLVEL 1325


>gi|330929198|ref|XP_003302547.1| hypothetical protein PTT_14414 [Pyrenophora teres f. teres 0-1]
 gi|311322015|gb|EFQ89360.1| hypothetical protein PTT_14414 [Pyrenophora teres f. teres 0-1]
          Length = 1791

 Score =  286 bits (733), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 241/900 (26%), Positives = 445/900 (49%), Gaps = 84/900 (9%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARI 996
            G+L    I  +K  +L ++      GRI ++E+ D   ++ +  N  ++FK+ + + AR+
Sbjct: 935  GTLTTVRIKTVKSTQLNVELAGNVLGRISVSELFDGWDSIPDKKNPTAHFKMNEKIQARV 994

Query: 997  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV------SIGQRVTGYVYK 1048
            + + +  + +  FL   S       V E+ +    +  E DV      + G   T +V  
Sbjct: 995  LGRHDARNFR--FLPITSRSNHKTPVYEMTANTDRIKTEADVLSLDKITPGSSHTAFVNN 1052

Query: 1049 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1108
            + + +  + IS +++ ++   D   E  +L   +  F +G A+   V +++     L L 
Sbjct: 1053 IADRYVWVNISANVRGRIDFFDLTEELEKLANVEENFPVGSALRVRVKAVDVAAGKLDLT 1112

Query: 1109 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1168
                   ++ KT+ + +      I  G I+  R++KI      +VVQI   L   +   +
Sbjct: 1113 A---VSTVTGKTLSLQD------IKVGYILPARVTKIHEA--SIVVQINEKLAAPIFLEQ 1161

Query: 1169 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1228
            L +                    YD  +  K KV ++ R       +++ + +   G+S+
Sbjct: 1162 LAD-------------------DYDMAKPNKFKVGDVLRACV----IDIDIPNKKLGLSA 1198

Query: 1229 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1288
              S  LS+ +      ++    L  + +V+G++K+V S G ++ L   ++A V +S+LSD
Sbjct: 1199 RPSRVLSSSLTVRDPEIKDKNQLKVHQVVRGFIKHVASNGVYVRLGPHVEAYVRVSHLSD 1258

Query: 1289 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1348
             Y++  +  F + +LV G+++S +   +  +++LKTS  +  + +E     +L VG IV 
Sbjct: 1259 EYIKDWKSAFHVDQLVTGKIISNKEDQRNPQMSLKTSVIQ-GNYTEPLEFGDLKVGQIVT 1317

Query: 1349 GQIKRVESYGLFITIENTNLV-GLCHVSELSEDHVDN--IETIYRAGEKVKVKILKVDKE 1405
             +++ VE +G+F+ ++N+N V GLCH+S+L+++ VD   I+ +Y+  + VK K++K++ +
Sbjct: 1318 ARVRHVEDFGVFLVVDNSNNVSGLCHISQLADNAVDKDKIKDMYKKDDIVKAKVVKIEPK 1377

Query: 1406 KRRISLGMKSSYFKNDADNLQM--SSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES 1463
            +R+IS  +K S  K+D ++  M  +SE++  +  +  G       ++  SV       ES
Sbjct: 1378 QRKISFTLKYSQIKDDGEDEDMEDASEDDLADDSDSDGGIELDEDIDMRSVK----SAES 1433

Query: 1464 EDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE 1523
            +D   L        A     E N DDE            G      T+D    + A   +
Sbjct: 1434 DDDVEL--------ADADEAEDNSDDEDTQTPAQGLSTSGFDWTGATLDIDQQKRAADSD 1485

Query: 1524 KEE-------REQEIRAAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1574
             E+       + ++    E+R  + DA  P++  ++ERL+   PNS+ +W++YM F   +
Sbjct: 1486 SEDDTPKKKKKSKKASIKEDRTGDLDAYGPQSVADYERLLLGQPNSAEMWVRYMVFQREL 1545

Query: 1575 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634
              +EKAR +A RAL TIN REE EKL++W A  +LEN++ +  ++ +  VF+ A Q  D 
Sbjct: 1546 NKIEKARQVARRALVTINPREEKEKLDVWTALLHLENDFAS--DDTIEGVFKEACQNNDS 1603

Query: 1635 KKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQQQ----EGVQ 1688
            +++H  ++ +Y  + +   AD L   M+K   F    K WL     L+   Q       +
Sbjct: 1604 REMHERMIKIYISSGKLDKADSLYQSMMKNKSFTQDPKFWLSYAAFLMDVLQPPSASQAR 1663

Query: 1689 AVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLD 1746
            A++QRA  S+   +H     + A LEFK  NG A+RGR++FEG++  + K+ D+W +YL 
Sbjct: 1664 ALLQRATQSVASTQHRYLTQKFAALEFKSPNGDAERGRTIFEGLVDTFAKKGDVWDMYLM 1723

Query: 1747 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
             E   GD D +R LFER   +     +++ +FKK+ E+E  VG ++ +E VK    ++ E
Sbjct: 1724 LEQSHGDEDKVRDLFERMTKVG-KSSRVRSVFKKWAEWENGVGSKKGVERVKMLEEQWRE 1782



 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 197/757 (26%), Positives = 345/757 (45%), Gaps = 60/757 (7%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---------DNEIE 51
           +N+S G  + G + +++ +DLV+ LP  L G   L    D L+  L         D +  
Sbjct: 147 KNLSTGTIVLGQIIDISHQDLVLALPNNLVGYVPLTAVCDKLNERLEKLLKDEDSDKKEG 206

Query: 52  ANEDNL----LPTIFHVGQLV-SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ 106
           ++ED+     L  +F VGQ V +CI    +D+ +   ++++ LS+   L+ KGL+   + 
Sbjct: 207 SDEDDFEDVYLKDMFSVGQYVRACITATNEDNAR--ARKRLELSIDPKLVNKGLTKRKIP 264

Query: 107 EGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSID 163
              ++ A V S EDHG ++  GL   +  GFLP+  L        ++ G +   +V  I+
Sbjct: 265 VNSMVQASVVSNEDHGLVMDLGLGDANLKGFLPKGELGPKIQHAKIQEGAVFMCLVTGIN 324

Query: 164 RTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
              ++V LS+D   V      +   +  +ID+ +PG  V   V     + ++   L    
Sbjct: 325 SDGRIVKLSADHTKVGNVAKGNTLTEAPTIDVFLPGTAVDVLVADTTSSTLVGKILGLID 384

Query: 222 GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL-------- 271
            T D +H   T    +    Y    KV ARILF  P S  R VG++L  +++        
Sbjct: 385 ATADAYHSGATEKAADVSQKYKIGTKVKARILFTCPDSEPRKVGVSLLDHVVSLSTRMSG 444

Query: 272 --HNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRK 327
               R PP+ +  + ++ + +KVV+V    G   D+    V   A+++ +SD   + + +
Sbjct: 445 KPKERKPPTDLLPISNVVENAKVVKVAPAQGAFFDLGIKDVVGFAHISRLSDDKVDAISE 504

Query: 328 LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVD 385
              ++K  S  + RI+G+  L+G+    L+    +       D+K G VVKGKV  +  D
Sbjct: 505 DSGQFKLDSTHKARIIGYNALDGMFQLSLEQKILDQPFLRIEDIKAGQVVKGKVHKLIAD 564

Query: 386 SFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTH 440
             GA   +++   G+  L P  H+++  +  P +KF+ G  +  RVL  +  R  I +T 
Sbjct: 565 KTGAAAVLIRLADGITGLVPEAHLADLRLQHPERKFREGVPVTARVLYTEPARHQIQLTL 624

Query: 441 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
           KK+LV S     ++Y   ++ L   G +  + ++G  VRFY  V+ + P +E+      +
Sbjct: 625 KKSLVNSDAKPWTNYEMLSEGLSGPGILVSVRRNGATVRFYGDVKAWLPVAEMSEAFVDD 684

Query: 501 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL-----VSGVVDVV 555
            +  +  GQVVK RI+ S+ A  R  L     P  V  +      +L     VSG V   
Sbjct: 685 ATRHFTNGQVVKVRII-SVDAKERQLLVSCKDPAAVDSNREAAFNALNPSDIVSGTVLEK 743

Query: 556 TPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLD--NESSN 611
           + ++  +  I  G  KG +   HL D    +  + MK  I+ G   ++L+VL    ++ +
Sbjct: 744 SDDSATLD-IGNGV-KGILRIGHLTDGSAKKDMSTMKK-IRIGGTLEELVVLTKHGKTRS 800

Query: 612 LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
             +S K SL   A   +L      +     VHG+V  I+    FV     ++G   +S+ 
Sbjct: 801 ATVSNKPSLRKDAHASKLAISIEDVQAGETVHGFVRGILPDKIFVELGNGISGVLFKSQL 860

Query: 670 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
            +   ++ +      QS+ + +  V+   G   LS+K
Sbjct: 861 PEEMISEPNFGLRKDQSITARVTHVDVGKGFFWLSMK 897



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 23/181 (12%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSK-----GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            +IED+    +V+G V  + +         I L+  +   V  ++L+D  ++ PE++F  G
Sbjct: 544  RIEDIKAGQVVKGKVHKLIADKTGAAAVLIRLADGITGLVPEAHLADLRLQHPERKFREG 603

Query: 1302 KLVAGRVLSVEPLSKRVEVTLK----TSDSRTASQSEINNLSNLHVGDIVIGQIKR---- 1353
              V  RVL  EP   ++++TLK     SD++  +  E+  LS    G  ++  ++R    
Sbjct: 604  VPVTARVLYTEPARHQIQLTLKKSLVNSDAKPWTNYEM--LSEGLSGPGILVSVRRNGAT 661

Query: 1354 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
            V  YG        ++     V+E+SE  VD+    +  G+ VKV+I+ VD ++R++ +  
Sbjct: 662  VRFYG--------DVKAWLPVAEMSEAFVDDATRHFTNGQVVKVRIISVDAKERQLLVSC 713

Query: 1414 K 1414
            K
Sbjct: 714  K 714



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 105/506 (20%), Positives = 190/506 (37%), Gaps = 73/506 (14%)

Query: 351  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
            + TG       +  + T  D+K G +   ++  V S    V+  G V     +  + +  
Sbjct: 912  MKTGEALVDPVDSKILTTDDIKFGTLTTVRIKTVKSTQLNVELAGNVLGRISVSELFDGW 971

Query: 411  IVKPGKK-----FKVGAELVFRVLGVKSKR-------ITVTHKKTLVKSKLAILSSYAEA 458
               P KK     FK+  ++  RVLG    R        + ++ KT V    A        
Sbjct: 972  DSIPDKKNPTAHFKMNEKIQARVLGRHDARNFRFLPITSRSNHKTPVYEMTANTDRIKTE 1031

Query: 459  TDRL----ITHG-----WITKIEKHGCFVRFYNGVQG----FAPRSELGLDPGCEPSSMY 505
             D L    IT G     ++  I     +V     V+G    F    EL      E +  +
Sbjct: 1032 ADVLSLDKITPGSSHTAFVNNIADRYVWVNISANVRGRIDFFDLTEELEKLANVEEN--F 1089

Query: 506  HVGQVVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVY 563
             VG  ++ R+ +   A+ +++L+ +   T   +S  D +K+G ++   V  +   ++VV 
Sbjct: 1090 PVGSALRVRVKAVDVAAGKLDLTAVSTVTGKTLSLQD-IKVGYILPARVTKIHEASIVVQ 1148

Query: 564  VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLIN 622
            +  K      I  E LAD  + A   K   K G      ++ +D  +  L LSA+ S + 
Sbjct: 1149 INEK--LAAPIFLEQLADDYDMAKPNK--FKVGDVLRACVIDIDIPNKKLGLSARPSRVL 1204

Query: 623  SAQ---QLPS--DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
            S+    + P   D + +  + VV G++ ++   G +VR    +  +   S   D    D 
Sbjct: 1205 SSSLTVRDPEIKDKNQLKVHQVVRGFIKHVASNGVYVRLGPHVEAYVRVSHLSDEYIKDW 1264

Query: 678  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
               ++V Q V   I+    +     +SLK S                            N
Sbjct: 1265 KSAFHVDQLVTGKIISNKEDQRNPQMSLKTSVIQG------------------------N 1300

Query: 738  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE------- 790
             +E        +G ++  +V    DFGV +  +  ++V G     QLA   V+       
Sbjct: 1301 YTEPLEFGDLKVGQIVTARVRHVEDFGVFLVVDNSNNVSGLCHISQLADNAVDKDKIKDM 1360

Query: 791  --SGSVIQAAILDVAKAERLVDLSLK 814
                 +++A ++ +   +R +  +LK
Sbjct: 1361 YKKDDIVKAKVVKIEPKQRKISFTLK 1386


>gi|189199792|ref|XP_001936233.1| rRNA biogenesis protein RRP5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983332|gb|EDU48820.1| rRNA biogenesis protein RRP5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1760

 Score =  284 bits (727), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 243/903 (26%), Positives = 430/903 (47%), Gaps = 127/903 (14%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARI 996
            G+L    I  +K  +L ++      GRI ++E+ D   ++ +  N  ++FK+ + V AR+
Sbjct: 936  GTLTTVRIKTVKSTQLNVELADNVQGRISVSELFDGWDSIPDKKNPTAHFKMNEKVQARV 995

Query: 997  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV------SIGQRVTGYVYK 1048
            + + +  + +  FL   S       V E+ +    +  E DV      + G   T +V  
Sbjct: 996  LGRHDARNFR--FLPITSRSNHKTPVYEMTANTDKIKREADVLSLDKITPGSSHTAFVNN 1053

Query: 1049 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1108
            + + +  + IS +++           P +L            VTG  +S+          
Sbjct: 1054 IADRYVWVNISANVRG----------PGKLD-----LTAVSTVTGKTMSL---------- 1088

Query: 1109 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1168
                QD                 I  G I+  R++KI      +VVQI   L   +   +
Sbjct: 1089 ----QD-----------------IKVGYILPARVTKIHEA--SIVVQINEKLAAPIFLEQ 1125

Query: 1169 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1228
            L +                    YD  +  K KV ++ R       +++ + +   G+S+
Sbjct: 1126 LAD-------------------DYDMAKPNKFKVGDVLRVCV----IDIDIPNKKLGLSA 1162

Query: 1229 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1288
              S  LS+ +      ++    L  + +V+G++K+V S G ++ L   ++A V +S+LSD
Sbjct: 1163 RPSRVLSSSLTVRDPEIKDKSQLKVHQVVRGFIKHVASNGVYVRLGPHVEAYVRVSHLSD 1222

Query: 1289 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1348
             Y++  +  F + +LV G+++S +   +  +++LKTS  +  + +E    S+L VG IV 
Sbjct: 1223 EYIKDWKSAFHVDQLVTGKIISNKEDQRNPQMSLKTSVIQ-GNYTEPLEFSDLKVGQIVT 1281

Query: 1349 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDN--IETIYRAGEKVKVKILKVDKE 1405
             +++ VE +G+F+ ++N+ N+ GLCH+S+L+++ VD   I+ +Y+  + VK KI+K++ +
Sbjct: 1282 AKVRHVEDFGVFLVVDNSSNVSGLCHISQLADNAVDKDKIKDMYKKDDVVKAKIVKIEPK 1341

Query: 1406 KRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV-----AVQDMD 1460
            +R+IS  +K S  K D ++  M    E DE  EE  S     L E+  +     A  D D
Sbjct: 1342 QRKISFTLKYSQIKGDGEDEDMEDASE-DELAEESDSDGGIELDEDVDMRSVKSAESDND 1400

Query: 1461 MESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK 1520
            +E  D         +     P               G+S + G      T+D    +HA 
Sbjct: 1401 VELADADEAEDDSDDEDIQTPA-------------QGLSTS-GFDWTGATLDADQQKHAA 1446

Query: 1521 KKEKEE-------REQEIRAAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFM 1571
              + E        + ++    E+R  + DA  P++  ++ERL+   PNS+ +W++YM F 
Sbjct: 1447 DSDSENDTPKKKKKSKKASIKEDRTGDLDAYGPQSVADYERLLLGQPNSAEMWVRYMVFQ 1506

Query: 1572 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1631
              + +VEKAR IA RAL TIN REE EKL++W A  +LEN++ +  ++ +  V + A Q 
Sbjct: 1507 RELNEVEKARQIARRALATINPREEKEKLDVWTALLHLENDFAS--DDTIEAVLKEACQN 1564

Query: 1632 CDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQQQ----E 1685
             D +++H   + +Y  + +   AD L   M+K   F    K WL     L+   Q     
Sbjct: 1565 NDSREMHERTIKIYISSGKLDKADSLYQSMMKNKSFTQDPKFWLSYAAFLMDVLQPPSAS 1624

Query: 1686 GVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSI 1743
              +A++QRA  S+  ++H     + A LEFK  NG A+RGR++FEG++  + K+ D+W +
Sbjct: 1625 RARALLQRATQSVASNQHRYLTQKFAALEFKSPNGDAERGRTIFEGLIDTFAKKGDVWDM 1684

Query: 1744 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803
            YL  E   GD D +R LFER   +     +++ +FKK+ E+E  VG ++ +E VK    +
Sbjct: 1685 YLMLEQSHGDEDKVRDLFERMTKVG-KSSRVRSVFKKWAEWENGVGNKKGVERVKTLEEQ 1743

Query: 1804 YVE 1806
            + E
Sbjct: 1744 WRE 1746



 Score =  197 bits (501), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 202/760 (26%), Positives = 346/760 (45%), Gaps = 62/760 (8%)

Query: 2   YPQNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEAN----- 53
           Y Q +SAG  + G + +++ +DLV+ LP  L G   L   +D L+  L+  ++       
Sbjct: 146 YKQKLSAGTIVLGQIIDISHQDLVLALPNNLVGYVPLTAVSDKLNERLEKLLKDEGAEKK 205

Query: 54  --------EDNLLPTIFHVGQLV-SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 104
                   ED  L  +F VGQ + +CI    +D+ +   ++++ LS+   L+ KGL+   
Sbjct: 206 EGSEDGDFEDVDLKDMFSVGQYIRACITATNEDNAR--ARKRLELSIDPKLVNKGLTKRK 263

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRS 161
           +    ++ A V S EDHG ++  GL   +  GFLP+  L        V+ G +   +V  
Sbjct: 264 IPVNSMVQASVVSNEDHGLVMDLGLGDANLKGFLPKGELGPKIQHAKVQEGAVFMCLVTG 323

Query: 162 IDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
           I+   ++V LS+D  T +  +TK     +  +ID+ +PG  V   V     + ++   L 
Sbjct: 324 INSDGRIVKLSAD-HTKAGNITKGNTLTEAPTIDVFLPGTAVDILVADTTSSTLVGKILG 382

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL----- 271
               T D +H   T    +    Y    KV ARILF  P S  R VG++L  +++     
Sbjct: 383 LIDATADAYHSGATEKAADVSQKYKIGSKVKARILFTCPNSEPRKVGVSLLDHVVSLSTR 442

Query: 272 -----HNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEE 324
                  R PP   + +  I + +KVV+V    G   D+    V   A+++ +SD   + 
Sbjct: 443 MSGKPKERKPPIDLLPISTIVESAKVVKVAPAQGAFFDLGIKDVVGFAHISRLSDDKVDV 502

Query: 325 VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--I 382
           + +   ++K  S  + RI+G+  L+G+    L+    +       D++ G VVKGKV  +
Sbjct: 503 ISEESGQFKLDSTHKARIIGYNALDGIFQLSLEQKVLDQPFLRIEDIQAGQVVKGKVHKL 562

Query: 383 AVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--IT 437
             D  GA   +V    G+  L P  H+++  +  P +KF+ G  +  RVL  +  R  I 
Sbjct: 563 IADKTGAAAVLVHLADGITGLVPEAHLADVRLQHPERKFREGVPVTARVLYTEPARHQIQ 622

Query: 438 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 497
           +T KK+LV S     ++Y   ++ L   G +T + ++G  VRFY  V+ + P +E+    
Sbjct: 623 LTLKKSLVNSDTKPWTNYEMLSEGLTGPGILTSVRRNGATVRFYGDVKAWLPAAEMSEAF 682

Query: 498 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL-----VSGVV 552
             + +  +  GQVVK RI+ S+ A  R  L     P  V  +      +L     V G V
Sbjct: 683 INDATRHFTNGQVVKVRII-SVDAKERQLLVSCKDPAAVDNNREAAFNALNPSDIVKGTV 741

Query: 553 DVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLD--NE 608
              + ++  +  I  G  KG +   HL D    +  + MK  I+ G   ++L+VL    +
Sbjct: 742 LEKSDDSATLD-IGNGV-KGILRIGHLTDGSAKKDISTMKK-IRIGGTLEELVVLTKHGK 798

Query: 609 SSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
           + +  +S K SL   AQ  +L      +     VHG+V  I+    FV     ++G   +
Sbjct: 799 TRSATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGILPDKIFVELGNGISGVLFK 858

Query: 667 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           S+  +   ++ +      QS+ + +  V+   G   LS+K
Sbjct: 859 SQLPEEMISEPNFGLRKDQSISARVTHVDVGKGFFWLSMK 898



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 19/179 (10%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSK-----GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            +IED+    +V+G V  + +         + L+  +   V  ++L+D  ++ PE++F  G
Sbjct: 545  RIEDIQAGQVVKGKVHKLIADKTGAAAVLVHLADGITGLVPEAHLADVRLQHPERKFREG 604

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKR----VE 1355
              V  RVL  EP   ++++TLK S  +S T   +    LS    G  ++  ++R    V 
Sbjct: 605  VPVTARVLYTEPARHQIQLTLKKSLVNSDTKPWTNYEMLSEGLTGPGILTSVRRNGATVR 664

Query: 1356 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             YG        ++      +E+SE  +++    +  G+ VKV+I+ VD ++R++ +  K
Sbjct: 665  FYG--------DVKAWLPAAEMSEAFINDATRHFTNGQVVKVRIISVDAKERQLLVSCK 715



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 158/772 (20%), Positives = 312/772 (40%), Gaps = 111/772 (14%)

Query: 671  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 730
            D +  DL   + VGQ +R+ I   N +  R    L+ S     D   + +  L + KI  
Sbjct: 212  DFEDVDLKDMFSVGQYIRACITATNEDNARARKRLELSI----DPKLVNKG-LTKRKIP- 265

Query: 731  LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAG--- 786
                              + S+++  V  + D G+V+      +++ GF+   +L     
Sbjct: 266  ------------------VNSMVQASVVSNEDHGLVMDLGLGDANLKGFLPKGELGPKIQ 307

Query: 787  -ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK-DLG 844
             A V+ G+V    +  +    R+V LS          + N+  +A         +  D+ 
Sbjct: 308  HAKVQEGAVFMCLVTGINSDGRIVKLSADHTKAGNITKGNTLTEAPTIDVFLPGTAVDIL 367

Query: 845  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP 904
            V  T ++ + + K   L+ +  +  HS      +D +      +++  G  V A ++   
Sbjct: 368  VADTTSSTL-VGKILGLIDATADAYHSGATEKAADVS------QKYKIGSKVKARILFTC 420

Query: 905  SSSTAGRL--LLLLKAISETETSSSKRAKKKSSYD---VGSLVQ-AEITEIKP-----LE 953
             +S   ++   LL   +S +   S K  ++K   D   + ++V+ A++ ++ P      +
Sbjct: 421  PNSEPRKVGVSLLDHVVSLSTRMSGKPKERKPPIDLLPISTIVESAKVVKVAPAQGAFFD 480

Query: 954  LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1013
            L +K  +GF    HI+ ++DDK +V+      FK+  T  ARII   N  D     +++L
Sbjct: 481  LGIKDVVGF---AHISRLSDDKVDVISEESGQFKLDSTHKARIIG-YNALDG----IFQL 532

Query: 1014 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK-VDNEWALLTISRHLKAQL--FILD 1070
            S++  +L       +      D+  GQ V G V+K + ++     +  HL   +   + +
Sbjct: 533  SLEQKVL------DQPFLRIEDIQAGQVVKGKVHKLIADKTGAAAVLVHLADGITGLVPE 586

Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1130
            +      LQ  +R+F  G  VT  VL     +  ++L L+  +  ++  T   +N  M  
Sbjct: 587  AHLADVRLQHPERKFREGVPVTARVLYTEPARHQIQLTLK--KSLVNSDTKPWTNYEM-- 642

Query: 1131 FIHEGDIVGGRISKILSGV--GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
             + EG    G    IL+ V   G  V+    +   +   E+    ++           D 
Sbjct: 643  -LSEGLTGPG----ILTSVRRNGATVRFYGDVKAWLPAAEMSEAFIN-----------DA 686

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
               +  GQ VK +++ +    R        L S  D  +  N+ + + +           
Sbjct: 687  TRHFTNGQVVKVRIISVDAKERQL------LVSCKDPAAVDNNREAAFNA---------- 730

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE---SPEKEFPI-GKLV 1304
              L+P+ IV+G V   +     + +   +   + + +L+DG  +   S  K+  I G L 
Sbjct: 731  --LNPSDIVKGTVLEKSDDSATLDIGNGVKGILRIGHLTDGSAKKDISTMKKIRIGGTLE 788

Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITI 1363
               VL+    ++   V+ K S  + A  S++  ++ +L  G+ V G ++ +    +F+ +
Sbjct: 789  ELVVLTKHGKTRSATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGILPDKIFVEL 848

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
             N  + G+   S+L E+ +       R  + +  ++  VD  K    L MK+
Sbjct: 849  GN-GISGVLFKSQLPEEMISEPNFGLRKDQSISARVTHVDVGKGFFWLSMKA 899



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 123/286 (43%), Gaps = 33/286 (11%)

Query: 359  SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE-FEIVKPGKK 417
            S   G   +  D+K G ++  +V  +     +VQ    + A   L  +++ +++ KP K 
Sbjct: 1079 STVTGKTMSLQDIKVGYILPARVTKIHEASIVVQINEKLAAPIFLEQLADDYDMAKPNK- 1137

Query: 418  FKVGAELVFRV----LGVKSKRITVTHKKTLV-KSKLAILSSYAEATDRLITH----GWI 468
            FKVG   V RV    + + +K++ ++ + + V  S L +     +   +L  H    G+I
Sbjct: 1138 FKVGD--VLRVCVIDIDIPNKKLGLSARPSRVLSSSLTVRDPEIKDKSQLKVHQVVRGFI 1195

Query: 469  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
              +  +G +VR    V+ +   S L  +   +  S +HV Q+V  +I+S+    R   +S
Sbjct: 1196 KHVASNGVYVRLGPHVEAYVRVSHLSDEYIKDWKSAFHVDQLVTGKIISNKEDQRNPQMS 1255

Query: 529  F--------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 580
                       +P   S+   +K+G +V+  V  V    V + V       G      LA
Sbjct: 1256 LKTSVIQGNYTEPLEFSD---LKVGQIVTAKVRHVEDFGVFLVVDNSSNVSGLCHISQLA 1312

Query: 581  DHLEHATVMKSVIKPGYEFD-----QLLVLDNESSNLLLSAKYSLI 621
            D+     V K  IK  Y+ D     +++ ++ +   +  + KYS I
Sbjct: 1313 DN----AVDKDKIKDMYKKDDVVKAKIVKIEPKQRKISFTLKYSQI 1354



 Score = 44.3 bits (103), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 123/320 (38%), Gaps = 45/320 (14%)

Query: 542  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
            +K+G ++   V  +   ++VV +  K      I  E LAD  + A   K   K G +  +
Sbjct: 1091 IKVGYILPARVTKIHEASIVVQINEK--LAAPIFLEQLADDYDMAKPNK--FKVG-DVLR 1145

Query: 602  LLVLDNESSN--LLLSAKYSLINSAQ---QLPS--DASHIHPNSVVHGYVCNIIETGCFV 654
            + V+D +  N  L LSA+ S + S+    + P   D S +  + VV G++ ++   G +V
Sbjct: 1146 VCVIDIDIPNKKLGLSARPSRVLSSSLTVRDPEIKDKSQLKVHQVVRGFIKHVASNGVYV 1205

Query: 655  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            R    +  +   S   D    D    ++V Q V   I+    +     +SLK S      
Sbjct: 1206 RLGPHVEAYVRVSHLSDEYIKDWKSAFHVDQLVTGKIISNKEDQRNPQMSLKTSVIQG-- 1263

Query: 715  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
                                  N +E        +G ++  KV    DFGV +  +  S+
Sbjct: 1264 ----------------------NYTEPLEFSDLKVGQIVTAKVRHVEDFGVFLVVDNSSN 1301

Query: 775  VYGFITHHQLAGATVE---------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 825
            V G     QLA   V+            V++A I+ +   +R +  +LK   I    E  
Sbjct: 1302 VSGLCHISQLADNAVDKDKIKDMYKKDDVVKAKIVKIEPKQRKISFTLKYSQIKGDGEDE 1361

Query: 826  SNRQAQKKKRKREASKDLGV 845
                A + +   E+  D G+
Sbjct: 1362 DMEDASEDELAEESDSDGGI 1381


>gi|196015125|ref|XP_002117420.1| hypothetical protein TRIADDRAFT_61471 [Trichoplax adhaerens]
 gi|190579949|gb|EDV20036.1| hypothetical protein TRIADDRAFT_61471 [Trichoplax adhaerens]
          Length = 927

 Score =  283 bits (723), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 193/647 (29%), Positives = 342/647 (52%), Gaps = 45/647 (6%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE----DNL---- 57
           G+ + G+V E+N  D+ + LPG L G   + + +  +  +L  ++++ E    D +    
Sbjct: 80  GVSVLGIVKEINPVDITVSLPGLLTGYIHITQMSSQMTQLLTRQLKSTELDGEDGVTQLD 139

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
           L + F +G ++ C+V +++  K +   ++I L++   +L        +Q GM L+ Y++S
Sbjct: 140 LNSFFRIGDMLRCVVDEVELTKSK--HKRIKLAIDPKILNAKFKANRIQTGMTLSGYIES 197

Query: 118 IEDHGYILHFGLPSFTGFLPRN---NLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSS 173
           +EDHGYI+ F + +  GFL +    + A++  + D+  GL +  V++ +    ++V +  
Sbjct: 198 VEDHGYIVSFEIENLVGFLSQQEGLDYAKSRELEDLPVGLPVNCVIQKVKDQGRMVTVGV 257

Query: 174 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
               V K    +    S D L  G+ V+  +  I   G  LSFL  F G+V   HL    
Sbjct: 258 SSSKVLKAKAHEGMRFSYDTLQAGLYVNGTIAKISTKGAQLSFLGGFRGSVTADHL---- 313

Query: 234 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR 293
              N      +  KV ARI++VD  S+ + L+L    ++ +   S V++G I + + V+R
Sbjct: 314 ---NQNQSLQERSKVVARIIYVDRKSKKIALSLLNITVNGQMDISQVEIGQIIEDAVVLR 370

Query: 294 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 353
           VD+G+GLLL +     +   YV IS  +++ + K  K+++ GS  R R++    ++ LA 
Sbjct: 371 VDKGVGLLLQLGD---NLKGYVHISRASDKHIDKFGKQHRAGSKHRCRVIANSLIDELAI 427

Query: 354 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 413
             ++ S  E    ++ D+KPG +V GK+I+++ FG +VQ    +KALCP  HMS+  +  
Sbjct: 428 ITMQQSVLEQQFISYKDIKPGTLVMGKIISLEDFGILVQVTDHIKALCPRLHMSDITLKH 487

Query: 414 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 471
           P KKFK G ++  RVL V  + +R+ +THKK++V S   +++SY EA + +  HG+I+ +
Sbjct: 488 PEKKFKEGNKIKCRVLTVDARRRRLILTHKKSMVHSSHVVITSYEEAQENVTAHGFISSV 547

Query: 472 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531
             +GCF+ FYN V+GF  +  L       P +++ VGQVV   I+S    +++++LS  +
Sbjct: 548 RSNGCFITFYNNVRGFVHKKYLSTQYIENPETVFFVGQVVLTYIVSVDAVNKKLSLS--L 605

Query: 532 KPTRVSEDDLVKLGSLVSGVVDV----VTPNAVVVYVIAKGYSKGTIPTEHLADH----- 582
           KP  ++      L    S VVDV     T   + V +   G +  ++P  HL+D      
Sbjct: 606 KPPALTTSTSSNLKFNQSKVVDVDLFRATAEGLDVLMQPSGLA-ASVPVHHLSDFHSNSR 664

Query: 583 --LEHATVMKSVIKP-GYEF-DQLLVLDNESSNLLLSAKYSLINSAQ 625
             + + T  +SV K    +F  QL+ +    S+++ S K SL+++ Q
Sbjct: 665 ALVNYFTSQQSVNKDVNTKFLKQLVTVGKTKSSVIASRKQSLVDAVQ 711



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 184/377 (48%), Gaps = 25/377 (6%)

Query: 352 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 411
           ++ +LKA A EG+ F++  ++ G+ V G +  + + GA + F GG +      H+++ + 
Sbjct: 259 SSKVLKAKAHEGMRFSYDTLQAGLYVNGTIAKISTKGAQLSFLGGFRGSVTADHLNQNQS 318

Query: 412 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 471
           ++  ++ KV A +++  +  KSK+I ++     V  ++ I  S  E   ++I    + ++
Sbjct: 319 LQ--ERSKVVARIIY--VDRKSKKIALSLLNITVNGQMDI--SQVE-IGQIIEDAVVLRV 371

Query: 472 EKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 530
           +K  G  ++  + ++G+   S        +    +  G   +CR++++   S    L+ +
Sbjct: 372 DKGVGLLLQLGDNLKGYVHISRASDKHIDKFGKQHRAGSKHRCRVIAN---SLIDELAII 428

Query: 531 MKPTRVSEDDLV-----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLE 584
                V E   +     K G+LV G +  +    ++V V    + K   P  H++D  L+
Sbjct: 429 TMQQSVLEQQFISYKDIKPGTLVMGKIISLEDFGILVQVT--DHIKALCPRLHMSDITLK 486

Query: 585 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 643
           H    +   K G +   ++L +D     L+L+ K S+++S+  + +       N   HG+
Sbjct: 487 HP---EKKFKEGNKIKCRVLTVDARRRRLILTHKKSMVHSSHVVITSYEEAQENVTAHGF 543

Query: 644 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT-YYVGQSVRSNILDVNSETGRIT 702
           + ++   GCF+ F   + GF  + K +  Q  +  +T ++VGQ V + I+ V++   +++
Sbjct: 544 ISSVRSNGCFITFYNNVRGFVHK-KYLSTQYIENPETVFFVGQVVLTYIVSVDAVNKKLS 602

Query: 703 LSLKQSCCSSTDASFMQ 719
           LSLK    +++ +S ++
Sbjct: 603 LSLKPPALTTSTSSNLK 619



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 189/476 (39%), Gaps = 92/476 (19%)

Query: 925  SSSKRAKKKS------SYDV---GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 975
            SSSK  K K+      SYD    G  V   I +I     +L F  GF G +    +N ++
Sbjct: 258  SSSKVLKAKAHEGMRFSYDTLQAGLYVNGTIAKISTKGAQLSFLGGFRGSVTADHLNQNQ 317

Query: 976  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1035
            S          +    V ARII    K            I  S+L ++  G     +   
Sbjct: 318  S---------LQERSKVVARIIYVDRKSK---------KIALSLLNITVNGQ---MDISQ 356

Query: 1036 VSIGQRV-TGYVYKVDNEWALL-TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1093
            V IGQ +    V +VD    LL  +  +LK  +                   HI +A   
Sbjct: 357  VEIGQIIEDAVVLRVDKGVGLLLQLGDNLKGYV-------------------HISRASDK 397

Query: 1094 HVLSINKE-----KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI--SKIL 1146
            H+    K+     K   R++     D ++  T+  S    Q FI   DI  G +   KI+
Sbjct: 398  HIDKFGKQHRAGSKHRCRVIANSLIDELAIITMQQSVLEQQ-FISYKDIKPGTLVMGKII 456

Query: 1147 SGVG-GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
            S    G++VQ+  H+        + +I +  P     E +F       EG  +KC+VL +
Sbjct: 457  SLEDFGILVQVTDHIKALCPRLHMSDITLKHP-----EKKFK------EGNKIKCRVLTV 505

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
                R    + L+ + S+              V +    +   E+   N+   G++ +V 
Sbjct: 506  DARRR---RLILTHKKSM--------------VHSSHVVITSYEEAQENVTAHGFISSVR 548

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
            S GCFI     +   V    LS  Y+E+PE  F +G++V   ++SV+ ++K++ ++LK  
Sbjct: 549  SNGCFITFYNNVRGFVHKKYLSTQYIENPETVFFVGQVVLTYIVSVDAVNKKLSLSLKPP 608

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1381
               T++ S +      +   +V   + R  + GL + ++ + L     V  LS+ H
Sbjct: 609  ALTTSTSSNL----KFNQSKVVDVDLFRATAEGLDVLMQPSGLAASVPVHHLSDFH 660


>gi|47220309|emb|CAG03343.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2384

 Score =  282 bits (721), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 190/571 (33%), Positives = 310/571 (54%), Gaps = 64/571 (11%)

Query: 1267 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS- 1325
            +G  + L       V +++L+D Y  +P   +   ++V  R   ++ ++ + +++L+ S 
Sbjct: 1845 RGLLVQLPFGSMGSVAVTDLADAYRPNPLNAYRKNQIV--RCFLLQKINGKWQLSLRPSR 1902

Query: 1326 ----DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG----------L 1371
                 ++     EI  +S L  G I+ G +  V   G+FI + ++++ G           
Sbjct: 1903 LNPEKAKPVKDLEILAVSELKEGQIIRGYVTSVGKCGIFIRL-SSSITGRAELQKSTKYF 1961

Query: 1372 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS-SYFKND--ADNLQMS 1428
            C    +  DH+ N       G  +  KI+ +D E+  +SL + S    K+D   ++L + 
Sbjct: 1962 CSNHSVLCDHLPN-------GTLITSKIISIDSEEELVSLSLLSEDTGKSDILPESLGLP 2014

Query: 1429 SEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLD 1488
                  E        N+  L E+   A       S  G S +  Q+ S  S         
Sbjct: 2015 LRLIGKEKKCNTEKKNKRKLSESEQAA------HSSAGPSRL--QVASGFS--------- 2057

Query: 1489 DEQPDMDNGISQNQGHT---DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-- 1543
                  D G+S  +  T   +   + +E+ N  +KKK + E EQ+ +AAE+ L++++   
Sbjct: 2058 -----WDAGLSSLKPATAMQESESSDEEEQNTSSKKKSRRELEQDKKAAEKALIQREVEL 2112

Query: 1544 ------PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1597
                  P     FERL+ +SPNSS +W++YMA  L    +E+AR++AERAL+TI+ REE 
Sbjct: 2113 MDPSLQPEDAAAFERLLLASPNSSLLWLQYMAHHLQATQIEQARTVAERALKTISFREEQ 2172

Query: 1598 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1657
            EKLN+WVA  NLEN YG   EE++ KVF+RA Q+C+P  V+  L  +Y ++E+ + A+ L
Sbjct: 2173 EKLNVWVALLNLENMYGT--EESLKKVFERAQQFCEPMPVYQQLADIYTKSEKIREAESL 2230

Query: 1658 LYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1716
               M+K+F+    VWL     LL++ Q +   A++QRAL S+P  + +  I++ A LEF+
Sbjct: 2231 YKTMVKRFRQHKVVWLNYGTFLLQRGQSDAANALLQRALKSMPPKESVDMIAKFAQLEFR 2290

Query: 1717 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1776
             G A+RGR+MF+ +L+ YPKRTDLWS+++D  ++ G    +R +F+R I LS+  KK+KF
Sbjct: 2291 YGDAERGRTMFDKVLTSYPKRTDLWSVFIDLMVKHGSQKDVREIFDRVIHLSVSVKKIKF 2350

Query: 1777 LFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             FK+YLEYEK  G  + I+ VK+KA+E+VES
Sbjct: 2351 FFKRYLEYEKKHGTPQSIQAVKEKAIEFVES 2381



 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 168/567 (29%), Positives = 294/567 (51%), Gaps = 50/567 (8%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEAN---EDNL 57
           QN+  GM L G V EV + ++ + LP GL+G   +    ++   +L  +++++   E   
Sbjct: 2   QNVREGMLLLGAVKEVADFEVTVSLPCGLQGYLSIKNICESYTKVLSKQLDSSDIEEIYS 61

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
           LP +F  G ++ C+V +LD  K   G   I LS+   L+ K L+  +++ GMVL+  V S
Sbjct: 62  LPHLFCPGMVLRCLVAKLDTSKG--GNLSIQLSINPKLVNKALTTSSLKAGMVLSGCVDS 119

Query: 118 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 177
           +EDHGYI+  G+     FLPR   A NS  ++K G  +   +  +    +VV LS     
Sbjct: 120 VEDHGYIVDIGIKGTNAFLPRKERA-NSQEELKVGQYVTSALEEVKNDGRVVRLSVSRLN 178

Query: 178 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 237
            S+   +  +G ++  L+PG++V+  ++ + ++G++L FL+ FTG VD  H++    ++ 
Sbjct: 179 SSQTCAQSSQGWNLTNLLPGLLVNATIKKVTKHGLILDFLSSFTGQVDFLHMEPEQASSY 238

Query: 238 WKND------------YNQHK-------------KVNARILFVDPTSRAVGLTLNPYLLH 272
            + D            ++  K             +V AR+L+V+P++R V L+L  +L+ 
Sbjct: 239 KEGDQVKLSLLLLIPVFSDFKLECSMKPCSAPPTQVRARVLYVEPSTRLVALSLRSFLVQ 298

Query: 273 NRA-----PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
           +       PP   + G++    K+  V    G +L++P     T A+   + + E + + 
Sbjct: 299 SETRLDLRPPGGDRAGEVVKSCKMTVVHHMSGAVLELPD---KTTAFAHKNHLKEPKEQL 355

Query: 328 LEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 384
            E +     E SC   RIL F  ++ +    L+ S  +   F + D++ G +V+G V  +
Sbjct: 356 NENRLLAMPEHSC---RILDFSLMDNIHFVTLRKSMIDKPFFRYHDLQAGQIVEGTVSVL 412

Query: 385 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKK 442
            + G +V     VK L P  H+S+  +  P KK+  G ++  RVL V+  SK++ +T KK
Sbjct: 413 LTSGMVVHLSDHVKGLVPRTHLSDIILKNPEKKYTEGMKIKCRVLSVEPESKKLYLTRKK 472

Query: 443 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
            LV+S L +  ++A+A    ++HG+I  I+  GC VRFYN V+G  P SEL  +P   P 
Sbjct: 473 ALVESSLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISRPE 532

Query: 503 SMYHVGQVVKCRIMSSIPASRRINLSF 529
            +++VGQV+K +++       ++ LSF
Sbjct: 533 DVFYVGQVLKTKVLQCDRQKAKMLLSF 559



 Score =  230 bits (586), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 249/999 (24%), Positives = 443/999 (44%), Gaps = 124/999 (12%)

Query: 365  VFTHSDVKPGMVVKGKVIAVDSFG-----AIVQFPGGVKALCPLPHMSEFEIVKPGKKFK 419
            +   S++K G +++G V +V   G      +V     VK L P  H+S+  +  P KK+ 
Sbjct: 1091 ILAVSELKEGQIIRGYVTSVGKCGIFISGMVVHLSDHVKGLVPRTHLSDIILKNPEKKYT 1150

Query: 420  VGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 477
             G ++  RVL V+  SK++ +T KK LV+S L +  ++A+A    ++HG+I  I+  GC 
Sbjct: 1151 EGMKIKCRVLSVEPESKKLYLTRKKALVESSLPLFRTFADARPGRVSHGYIVCIKDFGCI 1210

Query: 478  VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 537
            VRFYN V+G  P SEL  +P   P  +++VGQ    R M    A       F  +  +  
Sbjct: 1211 VRFYNDVKGLVPLSELSSEPISRPEDVFYVGQ----RAMEG-AAEEASAPEFDCQVGQKL 1265

Query: 538  EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
            E  ++K     SG+   + P+ +          + T+PT HL+DH+ +  ++   ++ G 
Sbjct: 1266 EAKVLK--KTASGLEVAILPDEI----------RATLPTMHLSDHMSNCPLLWECLQEGD 1313

Query: 598  EFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVR 655
                L+ ++    N+ L+ K ++  S  +  +  D S I   + + G+V NI+  G FV 
Sbjct: 1314 NISNLICINRGQQNIALTKKPTIRWSLDEGVVAKDFSEIKVGTQLFGWVKNIMPYGVFVE 1373

Query: 656  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
            F   L G AP+S   D   +D + ++ +GQ+V + + +++ E  R  ++LK S   S   
Sbjct: 1374 FPYGLVGLAPKSAMADRFISDTTASFQLGQTVMAKVTNLDEEKRRFLVTLKISEVISPAG 1433

Query: 716  SFMQE--HFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 772
              +    + L E K+          SEL + + G  +G  ++  V+ + D G     ++ 
Sbjct: 1434 DVLTRLVNGLQERKVMTEMLLARGASELHQQLAGLSVGQRLKLTVNTTADNGATFVSDDL 1493

Query: 773  SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 832
                   T   + G  +  G  + A IL +      V +S+ +            R  +K
Sbjct: 1494 HGATVQATRQHVTGVNLVPGQKVTAVILHIDLLSTHVHVSILS------------RLLEK 1541

Query: 833  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN 892
            +K   E SK         A V+ + +++ V+SL          + S  N       Q L 
Sbjct: 1542 RKPLNEGSK-------YTATVQHISQDFAVISLDNTAQLTVIQTSSHLNHMPLSGTQELK 1594

Query: 893  -GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS--YDVGSLVQAEITEI 949
             G S+   V+        G  L+        E SS KR   K+S  Y  G +VQA++  +
Sbjct: 1595 LGMSLTVEVIEASCQEAQGLPLV------SWERSSPKRQPTKTSMGYRFGEIVQAKVKSV 1648

Query: 950  KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTVTARII----AKSNK- 1002
            KP+ +++    G  G +H++EV D + +V +     F  K G TVTAR+I    A S++ 
Sbjct: 1649 KPIGIQVTLEDGTAGSVHVSEVIDAR-DVCQGYLPTFSVKAGSTVTARVIGGREASSHRF 1707

Query: 1003 -----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEE--CDVSIGQRVTGYVYKVDNEWAL 1055
                 P+ K + L EL++  S L  S     +  +E      +G+ +T +V K   +  +
Sbjct: 1708 LPFSHPNFKYTIL-ELTLISSKLDKSTELKPVSTKEHLNSYKVGEEITCFVLKFHPDKKV 1766

Query: 1056 LTISRH--LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1113
            L ++ H  +   + +L    +P      +  F +G+AV   V+  + + +   L L    
Sbjct: 1767 LEVTTHPGVIGTVELLAMITDPKLATHPENVFKMGQAVYAKVVEASTKPQRFTLSL---- 1822

Query: 1114 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1173
             G+             T + EG +  G +      + GL+VQ+         F  + ++ 
Sbjct: 1823 TGV-------------TQLEEGAVTLGMVIDS-DPLRGLLVQLP--------FGSMGSVA 1860

Query: 1174 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1233
            V+D    Y   + +PL+ Y + Q V+C +L+    + G +  +LSLR           S 
Sbjct: 1861 VTDLADAY---RPNPLNAYRKNQIVRCFLLQ---KINGKW--QLSLR----------PSR 1902

Query: 1234 LSTDVDTPGKHLE--KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1291
            L+ +   P K LE   + +L    I++GYV +V   G FI LS  +  +  L   +  + 
Sbjct: 1903 LNPEKAKPVKDLEILAVSELKEGQIIRGYVTSVGKCGIFIRLSSSITGRAELQKSTKYFC 1962

Query: 1292 ESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
             +        P G L+  +++S++   + V ++L + D+
Sbjct: 1963 SNHSVLCDHLPNGTLITSKIISIDSEEELVSLSLLSEDT 2001



 Score =  157 bits (396), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 223/937 (23%), Positives = 392/937 (41%), Gaps = 176/937 (18%)

Query: 542  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
            ++ G +V G V V+  + +VV++    + KG +P  HL+D      ++K+  K   E  +
Sbjct: 399  LQAGQIVEGTVSVLLTSGMVVHL--SDHVKGLVPRTHLSD-----IILKNPEKKYTEGMK 451

Query: 602  L----LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 657
            +    L ++ ES  L L+ K +L+ S+  L    +   P  V HGY+  I + GC VRF 
Sbjct: 452  IKCRVLSVEPESKKLYLTRKKALVESSLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFY 511

Query: 658  GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--------- 708
              + G  P S+      +     +YVGQ +++ +L  + +  ++ LS K++         
Sbjct: 512  NDVKGLVPLSELSSEPISRPEDVFYVGQVLKTKVLQCDRQKAKMLLSFKRAMEGAAEEAS 571

Query: 709  -----C----------CSSTDASFM---------------QEHFL--------------- 723
                 C           S T ASF                +  FL               
Sbjct: 572  APEFDCQVGQAMADRFISDTTASFQLGQTVMAKVTNLDEEKRRFLVTLKISEVISPAGDV 631

Query: 724  -------LEEKIAMLQSSKHNG-SEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
                   L+E+ AM +     G SEL + + G  +G  ++  V+ + D G     ++   
Sbjct: 632  LTRLVNGLQERKAMTEMLLARGASELHQQLAGLSVGQRLKLTVNTTADNGATFVSDDLHG 691

Query: 775  VYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKK 834
                 T   + G  +  G  + A IL +      V +S+ +            R  +K+K
Sbjct: 692  ATVQATRQHVTGVNLVPGQKVTAVILHIDLLSTHVHVSILS------------RLLEKRK 739

Query: 835  RKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN-G 893
               E SK         A V+ + +++ V+SL          + S  N       Q L  G
Sbjct: 740  PLNEGSK-------YTATVQHISQDFAVISLDNTAQLTVIQTSSHLNHMPLSGTQELKLG 792

Query: 894  QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS--YDVGSLVQAEITEIKP 951
             S+   V+        G  L+        E SS KR   K+S  Y  G +VQA++  +KP
Sbjct: 793  MSLTVEVIEASCQEAQGLPLV------SWERSSPKRQPTKTSMGYRFGEIVQAKVKSVKP 846

Query: 952  LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTVTARIIA---KSNKPDMK 1006
            + +++    G  G +H++EV D + +V +     F  K G TVTAR+I     S+   + 
Sbjct: 847  IGIQVTLEDGTAGSVHVSEVIDAR-DVCQGYLPTFSVKAGSTVTARVIGGREASSHSKLD 905

Query: 1007 KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH--LKA 1064
            KS      +KP + T   + S          +G+ +T +V K   +  +L ++ H  +  
Sbjct: 906  KS----TELKP-VSTKEHLNS--------YKVGEEITCFVLKFHPDKKVLEVTTHPGVIG 952

Query: 1065 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1124
             + +L    +P      +  F +G+AV   V+  + + +   L L     G+        
Sbjct: 953  TVELLAMITDPKLATHPENVFKMGQAVYAKVVEASTKPQRFTLSL----TGV-------- 1000

Query: 1125 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1184
                 T + EG +  G +      + GL+VQ+         F  + ++ V+D    Y   
Sbjct: 1001 -----TQLEEGAVTLGMVIDS-DPLRGLLVQLP--------FGSMGSVAVTDLADAY--- 1043

Query: 1185 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1244
            + +PL+ Y + Q V+C +L+    + G +  +LSLR           S L+ +   P K 
Sbjct: 1044 RPNPLNAYRKNQIVRCFLLQ---KINGKW--QLSLR----------PSRLNPEKAKPVKD 1088

Query: 1245 LE--KIEDLSPNMIVQGYVKNVTSKGCFI-----MLSRKLDAKVLLSNLSDGYVESPEKE 1297
            LE   + +L    I++GYV +V   G FI      LS  +   V  ++LSD  +++PEK+
Sbjct: 1089 LEILAVSELKEGQIIRGYVTSVGKCGIFISGMVVHLSDHVKGLVPRTHLSDIILKNPEKK 1148

Query: 1298 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1357
            +  G  +  RVLSVEP SK++ +T K +   + S       ++   G +  G I  ++ +
Sbjct: 1149 YTEGMKIKCRVLSVEPESKKLYLTRKKALVES-SLPLFRTFADARPGRVSHGYIVCIKDF 1207

Query: 1358 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1394
            G  +   N ++ GL  +SELS + +   E ++  G++
Sbjct: 1208 GCIVRFYN-DVKGLVPLSELSSEPISRPEDVFYVGQR 1243



 Score = 73.2 bits (178), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 2/170 (1%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            +  DL    IV+G V  + + G  + LS  +   V  ++LSD  +++PEK++  G  +  
Sbjct: 395  RYHDLQAGQIVEGTVSVLLTSGMVVHLSDHVKGLVPRTHLSDIILKNPEKKYTEGMKIKC 454

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            RVLSVEP SK++ +T K +   + S       ++   G +  G I  ++ +G  +   N 
Sbjct: 455  RVLSVEPESKKLYLTRKKALVES-SLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFYN- 512

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            ++ GL  +SELS + +   E ++  G+ +K K+L+ D++K ++ L  K +
Sbjct: 513  DVKGLVPLSELSSEPISRPEDVFYVGQVLKTKVLQCDRQKAKMLLSFKRA 562



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 110/510 (21%), Positives = 183/510 (35%), Gaps = 135/510 (26%)

Query: 986  FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1045
            FK+GQ V A+++              E S KP   T+S  G   L E      G    G 
Sbjct: 973  FKMGQAVYAKVV--------------EASTKPQRFTLSLTGVTQLEE------GAVTLGM 1012

Query: 1046 VYKVDNEWALLT---ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1102
            V   D    LL            +  L  AY P+ L  + R+  I +        + K  
Sbjct: 1013 VIDSDPLRGLLVQLPFGSMGSVAVTDLADAYRPNPLNAY-RKNQIVRCFL-----LQKIN 1066

Query: 1103 KLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSG---VGGLVVQIG 1157
               +L LRP +    +K   + +  +     + EG I+ G ++ +      + G+VV + 
Sbjct: 1067 GKWQLSLRPSRLN-PEKAKPVKDLEILAVSELKEGQIIRGYVTSVGKCGIFISGMVVHLS 1125

Query: 1158 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1217
             H+ G V  T L +I + +P   Y EG             +KC+VL +    +  +   L
Sbjct: 1126 DHVKGLVPRTHLSDIILKNPEKKYTEGMK-----------IKCRVLSVEPESKKLY---L 1171

Query: 1218 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
            + + +L              V++         D  P  +  GY+  +   GC +     +
Sbjct: 1172 TRKKAL--------------VESSLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFYNDV 1217

Query: 1278 DAKVLLSNLS------------------DGYVE---SPEKEFPIGKLVAGRVLS------ 1310
               V LS LS                  +G  E   +PE +  +G+ +  +VL       
Sbjct: 1218 KGLVPLSELSSEPISRPEDVFYVGQRAMEGAAEEASAPEFDCQVGQKLEAKVLKKTASGL 1277

Query: 1311 -VEPLSKRVEVTLKT---SDSRTASQ------SEINNLSNL------------------- 1341
             V  L   +  TL T   SD  +          E +N+SNL                   
Sbjct: 1278 EVAILPDEIRATLPTMHLSDHMSNCPLLWECLQEGDNISNLICINRGQQNIALTKKPTIR 1337

Query: 1342 ---------------HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
                            VG  + G +K +  YG+F+      LVGL   S +++  + +  
Sbjct: 1338 WSLDEGVVAKDFSEIKVGTQLFGWVKNIMPYGVFVEFPY-GLVGLAPKSAMADRFISDTT 1396

Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              ++ G+ V  K+  +D+EKRR  + +K S
Sbjct: 1397 ASFQLGQTVMAKVTNLDEEKRRFLVTLKIS 1426


>gi|355709778|gb|AES03704.1| programmed cell death 11 [Mustela putorius furo]
          Length = 686

 Score =  280 bits (716), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 141/290 (48%), Positives = 205/290 (70%), Gaps = 4/290 (1%)

Query: 1523 EKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1581
            EK++ E+E+   EE L++    P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR
Sbjct: 396  EKQKAEKELSRIEEALMDPGRQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKAR 455

Query: 1582 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1641
            ++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L
Sbjct: 456  AVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHL 513

Query: 1642 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPR 1700
              +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q G    V+QRAL  LP 
Sbjct: 514  ADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPI 573

Query: 1701 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1760
             +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +
Sbjct: 574  KEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDI 633

Query: 1761 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+  A
Sbjct: 634  FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEAKSA 683



 Score = 47.4 bits (111), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 31/240 (12%)

Query: 884  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 943
            K P K+F  GQ++ ATV+  P SS A   L L+                    + G +  
Sbjct: 4    KHPDKKFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEKGEVAM 47

Query: 944  AEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 1002
              + ++ P E L + F  G  GR+ +  ++D  S   E    +F   + V   ++A +  
Sbjct: 48   GRVVKVTPKEGLTVSFPFGKIGRVSVFHLSDSYS---ETPLEDFVPQKVVRCYVLATTG- 103

Query: 1003 PDMKKSFLWELSIKPSML---TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1059
                   +  LS++ S     T S+I    +    D+  GQ + GYV  V        + 
Sbjct: 104  ------HVLTLSLRSSRTNPKTKSKITDPEINSIQDIQEGQLLRGYVKSVQPHGVXXXLG 157

Query: 1060 RHLKA-QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1118
              +     +   S Y PS+   + +    GK +T  VLS+N+EK L+ L   P   G  D
Sbjct: 158  PSVVGLARYPYVSQYSPSDKALYHKHLPEGKLLTAKVLSLNREKNLVELSFLPDDTGKPD 217



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 101 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-------VKPGL 153
           S++ +QEG +L  YVKS++ HG     G PS  G      +++ S  D       +  G 
Sbjct: 130 SIQDIQEGQLLRGYVKSVQPHGVXXXLG-PSVVGLARYPYVSQYSPSDKALYHKHLPEGK 188

Query: 154 LLQGVVRSIDRTRKVVYLSSDPDTVSK 180
           LL   V S++R + +V LS  PD   K
Sbjct: 189 LLTAKVLSLNREKNLVELSFLPDDTGK 215



 Score = 42.4 bits (98), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 99/253 (39%), Gaps = 45/253 (17%)

Query: 1078 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1137
            L+   ++F IG+A+   V+  +  K  L L L             I    ++    +G++
Sbjct: 3    LKHPDKKFRIGQALKATVVGPDSSKAFLCLSL-------------IGPHKLE----KGEV 45

Query: 1138 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1197
              GR+ K+ +   GL V       GRV    L +         Y E    PL  +   + 
Sbjct: 46   AMGRVVKV-TPKEGLTVSFPFGKIGRVSVFHLSD--------SYSE---TPLEDFVPQKV 93

Query: 1198 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1257
            V+C VL  +  V     + LSLRSS      TN    S   D     +  I+D+    ++
Sbjct: 94   VRCYVLATTGHV-----LTLSLRSS-----RTNPKTKSKITDP---EINSIQDIQEGQLL 140

Query: 1258 QGYVKNVTSKGCFIMLSRK---LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
            +GYVK+V   G    L      L     +S  S        K  P GKL+  +VLS+   
Sbjct: 141  RGYVKSVQPHGVXXXLGPSVVGLARYPYVSQYSPSDKALYHKHLPEGKLLTAKVLSLNRE 200

Query: 1315 SKRVEVTLKTSDS 1327
               VE++    D+
Sbjct: 201  KNLVELSFLPDDT 213


>gi|209877006|ref|XP_002139945.1| S1 RNA binding domain-containing protein [Cryptosporidium muris RN66]
 gi|209555551|gb|EEA05596.1| S1 RNA binding domain-containing protein [Cryptosporidium muris RN66]
          Length = 1948

 Score =  278 bits (710), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 222/743 (29%), Positives = 381/743 (51%), Gaps = 97/743 (13%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG--YDEGQFDPLSG 1191
            EG+ V  ++  +L G  GL+V+     YGR+H TEL +I ++DP+S   Y  G+   L+ 
Sbjct: 1227 EGNNVLCKVVGVLQGYEGLIVKFDEKNYGRIHCTELDDIWINDPISEDRYKVGK--KLTV 1284

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK-IED 1250
               G+  K K + IS T    + V+L   +S       N S +  +++T      K I D
Sbjct: 1285 KVLGKLSKNKRVLISHTGSKKY-VQLIWDAS-------NRSSIIKNIETSSTSRPKSIND 1336

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--FPIGKLVAGRV 1308
            +    ++ GY+K    +G F+ + R L  ++ L  LS+      E    FPIGKL+   +
Sbjct: 1337 IKLGSLINGYIKYSGKQGVFVHIGRNLIGRIKLRELSNKTTTEEEARELFPIGKLL-NPI 1395

Query: 1309 LSVEPLSK-RVEVTLK--TSD------SRTASQSEINNLS-------------------- 1339
            L +  L + +++++L    SD      S+    SE+++L+                    
Sbjct: 1396 LVIGGLEENKIDLSLSRLQSDNVILKISQQKDYSELDDLNSHGNGEEQLSNYETNLLGKL 1455

Query: 1340 ---NLHVGDIVIGQIKRVES-YGLFITIENT--NLVGLCHVSELSEDHVDNIE----TIY 1389
               +L++G I+ G+IK V + +G+F+T+++T   +  LC ++E   D+ + I     +IY
Sbjct: 1456 RFEDLYIGRILAGKIKHVSTKFGIFVTLKDTIDGINALCPLNESMNDYSNKITQFLPSIY 1515

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1449
            + G+ V  KI+KVD    RI + +K   F+   ++ +  S +  D  +  + + + +  L
Sbjct: 1516 KVGDDVLCKIIKVDSNSNRIWVSLKEKNFEELLEDSESKSTDNEDNQL--MCANDTTQNL 1573

Query: 1450 ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1509
             NS +  ++   ++E     ++ Q              D  Q +M + I  N     E +
Sbjct: 1574 SNSEIISEEYLADNELLHEHIIIQ--------------DGIQNNMQDSIESNVHEYSEDE 1619

Query: 1510 TIDEK------NNRHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSF 1562
             + E        NR  K  ++   E EIR+ E +L+E    P++ ++FERL+ S  + S 
Sbjct: 1620 ILKETELHEKPKNRQQKLAKQLAAEHEIRSEELKLIESSMNPQSINDFERLLISHKDVSS 1679

Query: 1563 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG-----NPP 1617
            +WIKYM++ L + ++EKAR +AERAL+ ++  E+ E+ NIW+AY N+E  +G     N  
Sbjct: 1680 LWIKYMSYFLELDELEKARIVAERALRNVSYSEDIERWNIWIAYLNMEIAFGKFNINNSS 1739

Query: 1618 EEAVVK----VFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1672
            E+ + K    +F+RA +   +PKK+++       R   N  +  +L K +KKF  S KVW
Sbjct: 1740 EKELPKNFESLFERAYRNVGNPKKLYIQCSQSLSRFNYNVWSLLILEKALKKFSKSRKVW 1799

Query: 1673 LRRVQRLLKQQ--QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1730
            L  ++ L K    Q+    ++ +AL S+ R K I+ I+  A +E ++G  +R R++FE +
Sbjct: 1800 LEYIKCLFKNNKVQQARDEIIPKALQSIGRIKLIRLITDIARVELESGNFNRARTIFENL 1859

Query: 1731 LSEYPKRTDLWSIYLDQEIRLG-------DVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1783
            +SE PKR DLWS Y D  I+         D+++IR +F+ AI   L P+KMKFLF ++L 
Sbjct: 1860 ISENPKRIDLWSQYFDAVIKYFNSSNSEVDINIIRSIFKSAIRNDLKPRKMKFLFSRWLA 1919

Query: 1784 YEKSVGEEERIEYVKQKAMEYVE 1806
            +EK  G  E  + V++ A EYV+
Sbjct: 1920 FEKEYGSLEDQKIVQKYAAEYVQ 1942



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 8   AGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQL 67
            G  L+ ++ EV +K+L + LPGG  GLA   + L+    NE   N   LL   F  G +
Sbjct: 57  TGTLLFCIIDEVYDKELKLSLPGGHFGLATINNTLEDEASNEKLRNL--LLDERFKAGDI 114

Query: 68  VSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF 127
           V   ++     + E+  R   ++  L+   K L L    +G V++A + SIED+GY L  
Sbjct: 115 VIAAIICSSKGRVEVTIRPSIVNAGLTFSSKALGL----KGYVISATIISIEDYGYTLDV 170

Query: 128 GLP 130
            +P
Sbjct: 171 SIP 173


>gi|241730208|ref|XP_002413818.1| programmed cell death protein, putative [Ixodes scapularis]
 gi|215507634|gb|EEC17126.1| programmed cell death protein, putative [Ixodes scapularis]
          Length = 835

 Score =  277 bits (708), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 213/636 (33%), Positives = 334/636 (52%), Gaps = 87/636 (13%)

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            Y  GQ V+ KVL + +       VELS               L TD   PG  +      
Sbjct: 259  YKIGQAVRAKVLRVDKNT-----VELS--------------QLDTDTLEPGSKV------ 293

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE--KEFPIGKLVAGRVL 1309
              N  V   V   T+ G ++ L       + L+++SD + ++    +     + V  R+L
Sbjct: 294  --NACV---VSVRTTLGAYLCLPLGHRGVMGLTDVSDDFSKTTALMESHLQARYVRCRIL 348

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
            + +  + +  V+++ S    A  S     E+++ ++L V   + G +K V  +G F+ + 
Sbjct: 349  TQDEETGQFRVSMRESRLNMARASAVVDIEVDDFNDLSVDTSLRGFVKSVNKFGCFVNV- 407

Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA-- 1422
              N+ GL  +S+L    +     + + G  V V +  +   ++++ L + +S  ++    
Sbjct: 408  GYNIDGLVPLSKLP-GAIQRNRKMLKIGSLVSVVVKHIQAAEKKLLLTLSNSEIQSPTAP 466

Query: 1423 --DNLQMSSEEE----SDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIES 1476
                L  +SE E    S E   ++    R SL E  S  V+                   
Sbjct: 467  RKRRLSSTSETEPIYDSTEKKSKLDPLPRLSLGEGFSWDVE------------------- 507

Query: 1477 RASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE-KEEREQ---EIR 1532
              + P L  +L+D  P +       Q   DEA   +E+ ++H  +KE +EEREQ   ++R
Sbjct: 508  --ATPNLAKHLED-APAV-------QSSDDEA---EEQGSKHKTRKEIQEEREQAEAKLR 554

Query: 1533 AAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1591
              E RL++    P T D+F+RLV  SPNSS VW++YMAF L  A++EKAR++A RAL  I
Sbjct: 555  ERERRLVDPSREPETVDDFDRLVLVSPNSSIVWLRYMAFHLRQAEIEKARTVARRALDCI 614

Query: 1592 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1651
              REE EKLN+W A  NLE+ YG   ++++ +VF++ALQ  D  KV+  L  +Y    +N
Sbjct: 615  QFREEQEKLNVWTALLNLEHLYGT--QDSLNEVFRQALQCNDALKVYTHLAQIYVSANKN 672

Query: 1652 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQT 1710
            +LA+EL  +M+ KFK +  VWL      +K    E  ++++QRAL SLP+  H+  IS+ 
Sbjct: 673  ELAEELYKQMLNKFKQNVDVWLGFGLFYIKSGNVESCRSLLQRALKSLPKQDHVAIISKF 732

Query: 1711 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1770
            A +EFK G  +RG+SMF+ IL+ YPKRTDLW +Y+D   +L DV+ +R   ERA SL+L 
Sbjct: 733  AQMEFKYGDVERGKSMFDSILANYPKRTDLWLVYVDLLAKLPDVEGVRKTLERATSLNLN 792

Query: 1771 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            PKKMK LFKK+L++EK  G++   + V+Q+A+EYVE
Sbjct: 793  PKKMKPLFKKWLDFEKQHGDDTTSQKVRQRAVEYVE 828



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 173/401 (43%), Gaps = 57/401 (14%)

Query: 945  EITE-IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 1003
            EI E ++  +L++    G  GR+HIT + + +    EN    F+ G  +   I+ K+   
Sbjct: 125  EIVESVEKFQLKVSLKGGSRGRVHITMIKE-QPKEGENPMQGFQQGDKLRLHILGKTA-- 181

Query: 1004 DMKKSFLWELSIKPSMLTVSEIGSKLLFEE---CDVSIGQRVTGYVYKVDNEWALLTISR 1060
             ++   +  ++ + ++   S      LF     C+V  G  VTG+          L +S 
Sbjct: 182  -VQHKRMLAITGRKNLTECS------LFPHRGGCEVRPGNTVTGFFSHFSEGSLFLVLST 234

Query: 1061 HLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1120
               A+L IL+      +L    + + IG+AV   VL ++K                   T
Sbjct: 235  DKMAKLPILNMNLPAEDLPYVHKLYKIGQAVRAKVLRVDK------------------NT 276

Query: 1121 VDISNDNMQTFIHEGDIVGGRISKILSGVGG-LVVQIGPHLYGRVHFTELKNICVSDPLS 1179
            V++S  +  T +  G  V   +  + + +G  L + +G    G +  T+     VSD  S
Sbjct: 277  VELSQLDTDT-LEPGSKVNACVVSVRTTLGAYLCLPLGHR--GVMGLTD-----VSDDFS 328

Query: 1180 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1239
                     +  + + ++V+C++L       G F V  S+R S   M+   S+ +  +VD
Sbjct: 329  KTTA----LMESHLQARYVRCRILTQDEET-GQFRV--SMRESRLNMARA-SAVVDIEVD 380

Query: 1240 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1299
                      DLS +  ++G+VK+V   GCF+ +   +D  V LS L  G ++   K   
Sbjct: 381  -------DFNDLSVDTSLRGFVKSVNKFGCFVNVGYNIDGLVPLSKLP-GAIQRNRKMLK 432

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1340
            IG LV+  V  ++   K++ +TL  S+ ++ +      LS+
Sbjct: 433  IGSLVSVVVKHIQAAEKKLLLTLSNSEIQSPTAPRKRRLSS 473



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 123/303 (40%), Gaps = 25/303 (8%)

Query: 381 VIAVDSFGAIVQFPGGVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVLG---VKSKR 435
           V +V+ F   V   GG +    +  + E   E   P + F+ G +L   +LG   V+ KR
Sbjct: 127 VESVEKFQLKVSLKGGSRGRVHITMIKEQPKEGENPMQGFQQGDKLRLHILGKTAVQHKR 186

Query: 436 -ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 494
            + +T +K L +  L       E        G+ +   +   F+          P   + 
Sbjct: 187 MLAITGRKNLTECSLFPHRGGCEVRPGNTVTGFFSHFSEGSLFLVLSTDKMAKLPILNMN 246

Query: 495 LDPGCEP--SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 552
           L     P    +Y +GQ V+ +++     +  + LS +       + D ++ GS V+  V
Sbjct: 247 LPAEDLPYVHKLYKIGQAVRAKVLRVDKNT--VELSQL-------DTDTLEPGSKVNACV 297

Query: 553 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLDNESSN 611
             V         +  G+ +G +    ++D     T +M+S ++  Y   ++L  D E+  
Sbjct: 298 VSVRTTLGAYLCLPLGH-RGVMGLTDVSDDFSKTTALMESHLQARYVRCRILTQDEETGQ 356

Query: 612 LLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 665
             +S + S +N A+          D + +  ++ + G+V ++ + GCFV     + G  P
Sbjct: 357 FRVSMRESRLNMARASAVVDIEVDDFNDLSVDTSLRGFVKSVNKFGCFVNVGYNIDGLVP 416

Query: 666 RSK 668
            SK
Sbjct: 417 LSK 419


>gi|156348528|ref|XP_001621882.1| hypothetical protein NEMVEDRAFT_v1g143331 [Nematostella vectensis]
 gi|156208205|gb|EDO29782.1| predicted protein [Nematostella vectensis]
          Length = 274

 Score =  276 bits (707), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 132/269 (49%), Positives = 193/269 (71%), Gaps = 3/269 (1%)

Query: 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1602
             P   ++F+RLV SSPN+S  W++YMAF L   +++KAR++AERAL+TI+ REE EKLNI
Sbjct: 6    TPECAEDFDRLVLSSPNNSVTWLQYMAFHLHTTEIDKARAVAERALRTISFREEREKLNI 65

Query: 1603 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1662
            WVA  NLEN YG   +E+++KVF+RALQ+ +PKKV   L+ +Y ++E+ +LA++L + M 
Sbjct: 66   WVALMNLENLYGT--QESLIKVFERALQHNEPKKVFFHLITIYTQSEKTELAEKLFHTMT 123

Query: 1663 KKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            K+F  S  VW+   +  +K  + +  + ++QR L SLP  KH++ I Q A++EFKNG   
Sbjct: 124  KRFSQSKTVWIEFGRFFMKTGKPDSARKLLQRGLKSLPTRKHVETIVQFALMEFKNGDPQ 183

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            RG+++ E +LS YPKRTD+WS+Y+D   + G  D +R +FER I ++L  +KMKFLFKKY
Sbjct: 184  RGQTVLESVLSNYPKRTDIWSVYIDMMSKQGHPDTVRQIFERVIHMNLSSRKMKFLFKKY 243

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            L++E+  G+E  +E VK KAMEYVES +A
Sbjct: 244  LDFEREHGDEMSVEAVKTKAMEYVESKVA 272


>gi|449675704|ref|XP_002155874.2| PREDICTED: protein RRP5 homolog [Hydra magnipapillata]
          Length = 824

 Score =  275 bits (703), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 184/577 (31%), Positives = 312/577 (54%), Gaps = 29/577 (5%)

Query: 1249 EDL--SPNMIVQGYVKNV-TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            EDL  +  +++ G +  V  + G  I LS        ++ LSD + ESP   F + + V 
Sbjct: 253  EDLNVAKGVVINGKISKVLKNAGLLIELSNGKAGVAHITELSDHFEESPLNGFAVDQFVR 312

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRT----ASQSE----INNLSNLHVGDIVIGQIKRVESY 1357
             +VL+++   K  E+ L    SR     A+  E    IN   ++  GDI+ G +K     
Sbjct: 313  CKVLAIK---KNDEIDLSLRQSRINEGQANAGEWDRYINGYDDIKEGDILRGYVKSCSKI 369

Query: 1358 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1417
            G+F+++  T + G   +  LS+  V + E+++  G+ VK K++ +D     I L ++   
Sbjct: 370  GVFVSLSQT-INGRVQIKNLSQYFVKDFESLFHVGKLVKAKVIHIDPTTNHIDLSLRGK- 427

Query: 1418 FKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDM-----DMESEDGGSLVLA 1472
               D +++  +   +    + E     +    E      Q++     + + +D    V  
Sbjct: 428  ---DVNDVDPAPPPKRKLPVNEESEIKKKKKNEEKEENEQNLSSSESEFDIDDAKDKVKE 484

Query: 1473 QIESRA-SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEI 1531
            ++  +   +   + N ++ +P  +   S +    ++   ++ K  +  KK  K+  E+ +
Sbjct: 485  EVTKQTLKIDSFDWNEEETKPKKNESDSGDSSEDEKKAKVEAKKTKRQKKAAKKAEEEFL 544

Query: 1532 RAAEERLLEKDAP-RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1590
              AE  LL+ D    + ++F+RL   SPNSS +WI+YMAF L   +++KAR +A +ALQT
Sbjct: 545  HKAELALLDTDRHVDSSEDFDRLCLGSPNSSIIWIQYMAFHLHSVEIDKARHVARKALQT 604

Query: 1591 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1650
            I+ REE EKLN+WVA  NLEN YG    E++ KV   A+Q  DPKK++L +L ++ RT +
Sbjct: 605  ISFREEQEKLNVWVALLNLENMYGT--NESLEKVLHEAVQTNDPKKIYLKVLDIFARTNK 662

Query: 1651 NKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQ 1709
               A++L   ++K+FK S  VW+     L+K  + E  + ++QR L SL   KHI  I Q
Sbjct: 663  ITEAEKLYRIVLKRFKGSKSVWISYGFFLMKCGKLEEARNLLQRCLKSLHERKHIATIVQ 722

Query: 1710 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1769
             A++E+K G   RG ++ E +L  YPKR+D+WSIY+D  I++GD + +R +FER  +L +
Sbjct: 723  FALMEYKFGEPQRGSTILESVLKNYPKRSDIWSIYIDMTIKMGDYEQVRNIFERVTTLKM 782

Query: 1770 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
              KK+KF+FK+YLE+E+  G +  IE V+++  +YVE
Sbjct: 783  SAKKIKFMFKRYLEFEQKYGNKTTIEAVRKRGNDYVE 819



 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 197/400 (49%), Gaps = 56/400 (14%)

Query: 938  VGSLVQAEITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 996
            +GSLV A +  IKP +L +    G  +GRIHI+ ++D        L + FK  Q V A++
Sbjct: 74   LGSLVSAVVKGIKPAQLSVTLMNGRLNGRIHISNIHDTIEQGKSPLKA-FKPLQVVEAKV 132

Query: 997  IAKSN----------KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
            I   +            ++ +S + ELS+KPS+LT  E  ++    +   SIG+ V G+V
Sbjct: 133  IGFRDLRTHNYLPISHTNISRSMV-ELSLKPSVLTSQETETEKKINQ--FSIGEVVNGFV 189

Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
              V  +   ++++  +K ++ +L+ +    +L +++  F +G   +  +LS  ++     
Sbjct: 190  ASVTKKSLWISVNPLVKGKVSVLNISENIMDLNKWKSVFKVGLGYSFRILSCKED----- 244

Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1166
                          ++++       + +G ++ G+ISK+L    GL++++     G  H 
Sbjct: 245  -------------FLELTRLGEDLNVAKGVVINGKISKVLKN-AGLLIELSNGKAGVAHI 290

Query: 1167 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1226
            TEL            D  +  PL+G+   QFV+CKVL I +       ++LSLR S    
Sbjct: 291  TELS-----------DHFEESPLNGFAVDQFVRCKVLAIKKND----EIDLSLRQSRINE 335

Query: 1227 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1286
               N+ +         +++   +D+    I++GYVK+ +  G F+ LS+ ++ +V + NL
Sbjct: 336  GQANAGEWD-------RYINGYDDIKEGDILRGYVKSCSKIGVFVSLSQTINGRVQIKNL 388

Query: 1287 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
            S  +V+  E  F +GKLV  +V+ ++P +  ++++L+  D
Sbjct: 389  SQYFVKDFESLFHVGKLVKAKVIHIDPTTNHIDLSLRGKD 428



 Score = 44.7 bits (104), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 83/198 (41%), Gaps = 18/198 (9%)

Query: 530 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 589
            ++ TR+ ED  V  G +++G +  V  NA ++  ++ G + G      L+DH E + + 
Sbjct: 245 FLELTRLGEDLNVAKGVVINGKISKVLKNAGLLIELSNGKA-GVAHITELSDHFEESPL- 302

Query: 590 KSVIKPGYEFDQLL----VLDNESSNLLLSAKYSLINSAQQLPSDASH-------IHPNS 638
                 G+  DQ +    +   ++  + LS + S IN  Q    +          I    
Sbjct: 303 -----NGFAVDQFVRCKVLAIKKNDEIDLSLRQSRINEGQANAGEWDRYINGYDDIKEGD 357

Query: 639 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 698
           ++ GYV +  + G FV     + G             D    ++VG+ V++ ++ ++  T
Sbjct: 358 ILRGYVKSCSKIGVFVSLSQTINGRVQIKNLSQYFVKDFESLFHVGKLVKAKVIHIDPTT 417

Query: 699 GRITLSLKQSCCSSTDAS 716
             I LSL+    +  D +
Sbjct: 418 NHIDLSLRGKDVNDVDPA 435



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 9/172 (5%)

Query: 370 DVKPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           +V  G+V+ GK+  V  + G +++   G   +  +  +S+     P   F V   +  +V
Sbjct: 256 NVAKGVVINGKISKVLKNAGLLIELSNGKAGVAHITELSDHFEESPLNGFAVDQFVRCKV 315

Query: 429 LGVK-SKRITVTHKKTLVKSKLA-------ILSSYAEATDRLITHGWITKIEKHGCFVRF 480
           L +K +  I ++ +++ +    A        ++ Y +  +  I  G++    K G FV  
Sbjct: 316 LAIKKNDEIDLSLRQSRINEGQANAGEWDRYINGYDDIKEGDILRGYVKSCSKIGVFVSL 375

Query: 481 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 532
              + G      L      +  S++HVG++VK +++   P +  I+LS   K
Sbjct: 376 SQTINGRVQIKNLSQYFVKDFESLFHVGKLVKAKVIHIDPTTNHIDLSLRGK 427


>gi|114325445|gb|AAH55276.3| Pdcd11 protein [Mus musculus]
          Length = 297

 Score =  275 bits (703), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 140/287 (48%), Positives = 201/287 (70%), Gaps = 4/287 (1%)

Query: 1523 EKEEREQEIRAAEERLLEK-DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1581
            EK++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR
Sbjct: 6    EKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKAR 65

Query: 1582 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1641
            ++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L
Sbjct: 66   AVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHL 123

Query: 1642 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPR 1700
              +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP 
Sbjct: 124  ADIYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPA 183

Query: 1701 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1760
             +H+  I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +
Sbjct: 184  KEHVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDI 243

Query: 1761 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 244  FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 290


>gi|154309384|ref|XP_001554026.1| hypothetical protein BC1G_07586 [Botryotinia fuckeliana B05.10]
          Length = 1678

 Score =  274 bits (701), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 329/1308 (25%), Positives = 580/1308 (44%), Gaps = 160/1308 (12%)

Query: 373  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS------EFEIVKPGKKFKVGAELVF 426
            PG  V+  ++ V S G   +  G V     L H        E E     KKFK+GA++  
Sbjct: 360  PGTAVETLIVDVSSRGLTGKVMGMVDVTADLMHSGTSVMNQELE-----KKFKIGAKVRG 414

Query: 427  RVLGV----KSKRITVT---HKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKH 474
            RV+        +++ ++   H  +L + +     +     D L     +    I K+E  
Sbjct: 415  RVICTFPNSDPQKLGISLLDHVTSLTQQQAGKPGNKVNPLDTLPLSTIVEEVTIKKVESG 474

Query: 475  -GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL 527
             G FV     G+ GF   S +    ++   E +  Y VG V + R++  +S+     I+L
Sbjct: 475  VGLFVDVGIKGIPGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVLGYNSLDGVYLISL 534

Query: 528  --SFMMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD 581
              S + +P    ED  +K+G +V G V+  +V    V  ++  +A+  S G +P  HLAD
Sbjct: 535  EKSVLEQPYLRIED--LKIGEVVKGKVEKLIVNDKGVGGLLVNLAENIS-GLVPETHLAD 591

Query: 582  -HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 639
              L H    +   K G     ++L  D     + L+ K +L+NS          I     
Sbjct: 592  IQLLHP---EKKFKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSESPALVSYDDITVGMQ 648

Query: 640  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
              G + NI+ TG  V+F G + GF P S+  +    D ++ + +GQ V  ++L V+ E  
Sbjct: 649  SPGTIVNILNTGAVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIGQVVNVHVLKVDPEAK 708

Query: 700  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 759
            ++T+S K             ++  + E ++ L   K N      ++G  + +++      
Sbjct: 709  KLTVSCKDPSVFGLAQQNALKNLKIGEIVSALVIEKSNDDISVEIQGLGLKAILP----- 763

Query: 760  SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFI 818
                G +    E+     F          +  G V+   A+LD  + +RL+ L+ K   +
Sbjct: 764  ---VGHLTDGSENKSRSSF--------KNIRVGQVLSDLAVLDKLEPKRLIVLTNKPALV 812

Query: 819  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS-------------L 865
                     + AQ K   R    D+   +TV+  V+ +    + +              +
Sbjct: 813  ---------KAAQNKTLLR-MFDDVKEKKTVHGFVKNITLTAVFVQFGGGLTGLLPKNKI 862

Query: 866  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 925
            PE N  +       Y T +       +GQ      MA  +S       L   A  E    
Sbjct: 863  PEKNLRLPDFGFKKYQTIEVKVLTIDHGQRRFLLSMADATSDKKSNEPLAPGANQEAVNP 922

Query: 926  SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLF 983
              +  K      +G L +A ++ +K  ++ ++      GRI +++  D  S++   +   
Sbjct: 923  IDETIKSIEDITLGRLTKARVSSVKDTQVNVQLADNIQGRIDVSQAFDSWSDIKSKKQPL 982

Query: 984  SNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEEC 1034
              F   Q V  R++   +  + +         K+ ++ELS KPS  T S      L +  
Sbjct: 983  KTFSPKQIVDVRVLGIHDARNHRFLPISHRSGKTLVFELSAKPSDQTESAQDPVSLDK-- 1040

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
             + +G     +V  V  +   + IS +++ ++  LD + + S L++    F IG A+  H
Sbjct: 1041 -IKVGSSWLAFVNNVGVDCLWVNISPNVRGRISALDVSDDVSLLKDLAANFPIGSAIRVH 1099

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGL 1152
            V  ++ E   L L  R  QD               TF  + +G IV G+++++      +
Sbjct: 1100 VKGVDVETNRLDLSARSSQDS-----------EALTFDKLSQGMIVPGKVTRV--NERQV 1146

Query: 1153 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1212
            +VQ+   +   ++ T+L +          D  + DP S Y +   V+  V +I    +  
Sbjct: 1147 MVQLTDSISAPINLTDLCD----------DYSEADP-SKYSKNDIVRVCVTDIDVPNK-- 1193

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
              V LS R+S    SS    D           +  I  L  N IV+G+VK+V  KG F+ 
Sbjct: 1194 -RVRLSTRASRVMNSSAAVQD---------PEISSISQLKVNDIVRGFVKHVADKGLFVN 1243

Query: 1273 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTA 1330
            L   + A V +S+LSD Y++  + EF + +LV G+V  V+ +   V+++LK S  D    
Sbjct: 1244 LGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLSLKPSVIDKDYV 1303

Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1389
            +    N++    V  +V G+I++VE +G+FI ++ + N+ GLCH SE++E  V +++ +Y
Sbjct: 1304 APLTFNDI---QVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLY 1360

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1449
              G+ VK  +LK+D EK+RIS  MK+S+F+ D +     S+++  + ++           
Sbjct: 1361 SEGDAVKAIVLKMDTEKKRISFSMKASHFE-DGNESDDESDDDGVDGVKLDSMDIDDDDD 1419

Query: 1450 ENSSVA-------VQDMDMESEDGGSLVLAQIE---SRASVPPLEVNLDDEQPDMDNGIS 1499
            ++           VQD++  +EDG     +  E   +   VP L     D   D+   + 
Sbjct: 1420 DDDDSEGGIDLDDVQDLESAAEDGDEASDSDEEMPDAEGDVPALSAGGFDWSADL---LD 1476

Query: 1500 QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1559
            Q  G ++    +D  +    +K +K++R+ EI+      L+ + P++  +FERL+   P+
Sbjct: 1477 QADGQSN----VDSDDEGTEEKPKKKKRKAEIKVDRTGDLDANGPQSISDFERLLLGQPD 1532

Query: 1560 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1607
            SS +W +YMAF + ++++ KAR IAERA++TIN+REE EKLNIW+A  
Sbjct: 1533 SSSLWTQYMAFQMQLSELGKAREIAERAIKTINMREETEKLNIWLALL 1580



 Score =  206 bits (525), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 194/717 (27%), Positives = 321/717 (44%), Gaps = 61/717 (8%)

Query: 8   AGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL---------- 57
           +G  + G V+++N  D+ + LP  L G        D + +                    
Sbjct: 150 SGSLVLGQVSQINATDIALSLPNNLTGYVPITAISDKVTERVEAIAAAEEDDADDEVEVE 209

Query: 58  ---LPTIFHVGQLVSCIVLQLDDDKKEI----GKRKIWLSLRLSLLYKGLSLETVQEGMV 110
              L  +F +GQ +   V+   DD        GKR+I LSLR      G++ + +     
Sbjct: 210 DIDLKKMFSLGQYLRAYVVSTSDDTNTATLGKGKRRIELSLRPQHANNGVTPQNLINNTT 269

Query: 111 LTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLA-ENSGIDVKPGLLLQGVVRSIDRTRK 167
           L A V S+EDHG I++ GL      GF+   ++  E    DV+ G +   +V  +    K
Sbjct: 270 LMASVTSVEDHGLIMNIGLEDTGIRGFMGAKDIGYEVVLADVQEGAVFLCMVTGLSSNGK 329

Query: 168 VVYLSSDPDTVSKCVTKD--LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
            V L +D   +      +      ++D  +PG  V T +  +   G+    +     T D
Sbjct: 330 TVKLCADTQKIGNVKKSNYLTDAPTVDAFLPGTAVETLIVDVSSRGLTGKVMGMVDVTAD 389

Query: 226 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPY---LLHNRA----- 275
           + H   +      +  +    KV  R++   P S  + +G++L  +   L   +A     
Sbjct: 390 LMHSGTSVMNQELEKKFKIGAKVRGRVICTFPNSDPQKLGISLLDHVTSLTQQQAGKPGN 449

Query: 276 ---PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 331
              P   + +  I ++  + +V+ G+GL +D+    +  P +V IS V + ++  LE+  
Sbjct: 450 KVNPLDTLPLSTIVEEVTIKKVESGVGLFVDVGIKGI--PGFVHISRVKDGKIETLEETT 507

Query: 332 --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV---IAVDS 386
             YK GS  R R+LG+  L+G+    L+ S  E       D+K G VVKGKV   I  D 
Sbjct: 508 GPYKVGSVHRGRVLGYNSLDGVYLISLEKSVLEQPYLRIEDLKIGEVVKGKVEKLIVNDK 567

Query: 387 --FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKK 442
              G +V     +  L P  H+++ +++ P KKFK G  +  RVL      ++I +T KK
Sbjct: 568 GVGGLLVNLAENISGLVPETHLADIQLLHPEKKFKEGMAVTARVLSTDPGKRQIRLTLKK 627

Query: 443 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
           TLV S+   L SY + T  + + G I  I   G  V+FY  V+GF P SE+      +P+
Sbjct: 628 TLVNSESPALVSYDDITVGMQSPGTIVNILNTGAVVQFYGNVRGFLPVSEMSEAYIQDPN 687

Query: 503 SMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVT 556
             + +GQVV   ++   P ++++ +S      F +      ++  +K+G +VS +V   +
Sbjct: 688 QHFKIGQVVNVHVLKVDPEAKKLTVSCKDPSVFGLAQQNALKN--LKIGEIVSALVIEKS 745

Query: 557 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDN-ESSNLL- 613
            + + V +   G  K  +P  HL D  E+ +      I+ G     L VLD  E   L+ 
Sbjct: 746 NDDISVEIQGLGL-KAILPVGHLTDGSENKSRSSFKNIRVGQVLSDLAVLDKLEPKRLIV 804

Query: 614 LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
           L+ K +L+ +AQ   L      +     VHG+V NI  T  FV+F G LTG  P++K
Sbjct: 805 LTNKPALVKAAQNKTLLRMFDDVKEKKTVHGFVKNITLTAVFVQFGGGLTGLLPKNK 861



 Score = 44.7 bits (104), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 22/277 (7%)

Query: 183  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 242
            ++D + ++ D L  GM+V  +V  + E  VM+      +  +++  L + +   +  + Y
Sbjct: 1117 SQDSEALTFDKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEAD-PSKY 1175

Query: 243  NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVR 293
            +++  V   +  +D  ++ V L+     + N +           S +KV DI        
Sbjct: 1176 SKNDIVRVCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHV 1235

Query: 294  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 353
             D+GL + L    T     AYV ISD+++  ++  + +++    V+ ++     +     
Sbjct: 1236 ADKGLFVNLGGNVT-----AYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQ 1290

Query: 354  GILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSE 408
              LK S  +       T +D++   VV GK+  V+ FG  +   G   V  LC    M+E
Sbjct: 1291 LSLKPSVIDKDYVAPLTFNDIQVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAE 1350

Query: 409  FEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 443
              +    K +  G  +   VL + +  KRI+ + K +
Sbjct: 1351 KRVHDVKKLYSEGDAVKAIVLKMDTEKKRISFSMKAS 1387



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 114/536 (21%), Positives = 210/536 (39%), Gaps = 74/536 (13%)

Query: 62   FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS------LETVQEGMVLTAYV 115
              VGQ++S + +    DK E  KR I L+ + +L+    +       + V+E   +  +V
Sbjct: 782  IRVGQVLSDLAVL---DKLE-PKRLIVLTNKPALVKAAQNKTLLRMFDDVKEKKTVHGFV 837

Query: 116  KSIEDHGYILHFGLPSFTGFLPRNNLAENS----GIDVKPGLLLQGVVRSIDRTRKVVYL 171
            K+I      + FG    TG LP+N + E +        K    ++  V +ID  ++   L
Sbjct: 838  KNITLTAVFVQFG-GGLTGLLPKNKIPEKNLRLPDFGFKKYQTIEVKVLTIDHGQRRFLL 896

Query: 172  SSDPDTVSKCVTKDLKG--------------ISIDLLVPGMMVSTRVQSILENGVMLSFL 217
            S    T  K   + L                 SI+ +  G +   RV S+ +  V +   
Sbjct: 897  SMADATSDKKSNEPLAPGANQEAVNPIDETIKSIEDITLGRLTKARVSSVKDTQVNVQLA 956

Query: 218  TYFTGTVDIFHLQNTFPTTNWKND----YNQHKKVNARILFVD--------PTSRAVGLT 265
                G +D+    +++     K      ++  + V+ R+L +         P S   G T
Sbjct: 957  DNIQGRIDVSQAFDSWSDIKSKKQPLKTFSPKQIVDVRVLGIHDARNHRFLPISHRSGKT 1016

Query: 266  LNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS------- 318
            L   +    A PS  +     D   + ++  G   L  + +  V    +V IS       
Sbjct: 1017 L---VFELSAKPSD-QTESAQDPVSLDKIKVGSSWLAFVNNVGVDC-LWVNISPNVRGRI 1071

Query: 319  ---DVAEEE--VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 373
               DV+++   ++ L   +  GS +RV + G   +E     +   S+ +    T   +  
Sbjct: 1072 SALDVSDDVSLLKDLAANFPIGSAIRVHVKGV-DVETNRLDLSARSSQDSEALTFDKLSQ 1130

Query: 374  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVKPGKKFKVGAELVFRV---- 428
            GM+V GKV  V+    +VQ    + A   L  +  ++    P K  K     + RV    
Sbjct: 1131 GMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEADPSKYSK---NDIVRVCVTD 1187

Query: 429  LGVKSKRITVTHKKTLVKSKLAI-----LSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
            + V +KR+ ++ + + V +  A      +SS ++     I  G++  +   G FV     
Sbjct: 1188 IDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHVADKGLFVNLGGN 1247

Query: 484  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
            V  +   S+L      +  S + V Q+VK ++         + LS  +KP+ + +D
Sbjct: 1248 VTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLS--LKPSVIDKD 1301


>gi|449275571|gb|EMC84384.1| Protein RRP5 like protein, partial [Columba livia]
          Length = 585

 Score =  274 bits (700), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 137/286 (47%), Positives = 197/286 (68%), Gaps = 4/286 (1%)

Query: 1524 KEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1582
            ++++E+E+   E  L++    P++ D+F+RLV SSPNSS +W++YMAF L   ++EKAR+
Sbjct: 295  RQKKEKELCKLEAALMDPSRQPQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARA 354

Query: 1583 IAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL 1642
            +AERAL+TI  REE EKLN+WVA  NLEN YG   EE ++KVF+RA+QY +P KV   L 
Sbjct: 355  VAERALKTICFREEQEKLNVWVALLNLENMYGT--EETLMKVFERAVQYNEPLKVFQHLC 412

Query: 1643 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1701
             +Y  +E+ K A+EL + M+K+F+    VWL+    LLKQ Q E    +++RAL +LP  
Sbjct: 413  DIYANSEKYKQAEELYHTMLKRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTK 472

Query: 1702 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1761
            +H+  IS+ A LEF+ G  +  +++FE  L+ YPKRTD+WSIY+D  I+ G    +R +F
Sbjct: 473  EHVDVISRFAQLEFRFGDPEHAKALFESTLNSYPKRTDIWSIYMDIMIKQGSQQEVRDIF 532

Query: 1762 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            ER I +SL PKKMKF FK+YL+YE   G  E +  VK+ A+EYVE+
Sbjct: 533  ERVIHMSLAPKKMKFFFKRYLDYENKFGTAESVLAVKRAALEYVET 578



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 11/116 (9%)

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            ++LSLR S     S N  +   DV+     +  I D+    +V+GYVK+VT  G F  LS
Sbjct: 12   IQLSLRQSRLNPKSNNKVE---DVE-----ITCINDVKKGQLVRGYVKSVTPSGVFFGLS 63

Query: 1275 RKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
              L  ++L  N+S  +V+     EK  P GKL+  +VL V    K VE++L   D+
Sbjct: 64   TSLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLGVNGKEKHVELSLLPEDT 119


>gi|384494519|gb|EIE85010.1| hypothetical protein RO3G_09720 [Rhizopus delemar RA 99-880]
          Length = 397

 Score =  274 bits (700), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 131/270 (48%), Positives = 196/270 (72%), Gaps = 3/270 (1%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L ++AP+   EFERL+  SPNSS++WI YMA+ L +++++KAR+I ERAL+TIN REE E
Sbjct: 128  LNENAPQNAHEFERLLVGSPNSSYLWINYMAYELKLSEIDKARAIGERALKTINFREEQE 187

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLN+WVA  NLEN +G+  E+ + +VF+RA  YC+P KV+  +  +YER+++   A+ + 
Sbjct: 188  KLNVWVALLNLENNFGS--EDTLQEVFKRATIYCEPIKVYQHMTEIYERSDKLDKAESVW 245

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
             +M KKF  S +VW      LL+Q + E  + ++QR+L  LP+H+HI+ + + A LEFK+
Sbjct: 246  EEMCKKFGQSPEVWTGFGLFLLQQDKTEKAREILQRSLRILPKHEHIQTVLKFAQLEFKH 305

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1777
            G A+RGR++ EG +S +PKR DLW++YLD EI+ GD+D+ R LFER  SL    KKMKF+
Sbjct: 306  GEAERGRTLLEGTVSNHPKRLDLWNVYLDMEIKAGDIDMARRLFERVASLKFSSKKMKFI 365

Query: 1778 FKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            FKK+L++EKS G ++ ++ VK++ + YVES
Sbjct: 366  FKKWLQFEKSHGSDDDVQRVKERTLAYVES 395


>gi|403159936|ref|XP_003320504.2| hypothetical protein PGTG_02526 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375169342|gb|EFP76085.2| hypothetical protein PGTG_02526 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1909

 Score =  273 bits (698), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 192/644 (29%), Positives = 333/644 (51%), Gaps = 67/644 (10%)

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
            S Y +G  +   V++I +    T+   LS+R S D    TN S  S+  D P   + + +
Sbjct: 1296 SKYQDGSEITACVIQIDKKSLTTY---LSVRPS-DLNKLTNESLKSSVKDRP---IRQWK 1348

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            +L     ++G+V+ VT  G  + +   + A+V + +L D  +   + +F IG++V+G+++
Sbjct: 1349 NLRIGTAIRGFVQRVTDHGLMLQVGTNIRAQVSVQDLFDEDMPDWKSKFRIGQVVSGKII 1408

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            S+     RV +    S  +     E      L +G I+  ++  +++YG+F+ +  + + 
Sbjct: 1409 SLHNHKARVSLRENPSAPKGVPVWE-----KLQIGQILSTEVSNIQTYGMFLKVPKSKIS 1463

Query: 1370 GLCHVSELSED------HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
            GLCH +++ +D      H  +    Y  G K+K  I+ +D  K+++S  +K S    +A+
Sbjct: 1464 GLCHRTQIYDDPKDYEEHKKDWNKAYSEGMKLKASIISLDVSKKKVSFAIKPSVVNPEAN 1523

Query: 1424 NLQMSSEEESDEAIE-----------EVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLA 1472
            +   ++E+ S E I+           +  S+   SLL  S+V                  
Sbjct: 1524 S---AAEDLSPEVIQITDHDSDEDTDDDASHPEGSLLPTSNVD----------------- 1563

Query: 1473 QIESRASVPPLEVNLDDEQP--DMDNGIS--QNQGHTDEAKTIDEKNNRHAKKKEKEERE 1528
              E++    P  V++D  +P   +  G +   N+  TD  +  DE++       E     
Sbjct: 1564 --EAQTKAHPATVSIDFTEPCLPISTGFTWDANRSGTDNVEDQDEQSTDTDDAAE----- 1616

Query: 1529 QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1588
               R + E   +    ++ DE ERL++ SPNSS +WI+ +   +   D+ +AR  AERAL
Sbjct: 1617 ---RGSAEVTSDPTDQQSVDEIERLLKLSPNSSHLWIRLITIYIQKLDIPQARETAERAL 1673

Query: 1589 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1648
            + I+ REE EK  +W+A  NLEN YG   EE   + F+ A    D K V+L +  +Y  +
Sbjct: 1674 EAIHYREEGEKWKVWIALLNLENTYGT--EEQFRETFKEASARNDTKTVYLKVAEIYSES 1731

Query: 1649 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQE-GVQAVVQRALLSLPRHKHIKFI 1707
             + + ADE+  + +KK+  S KVW       LK  +     +++ R+L SLP+HKH+K I
Sbjct: 1732 GKTEKADEIYSQALKKYSRSSKVWTLYGGFCLKNNRPTDPSSLLSRSLKSLPQHKHVKTI 1791

Query: 1708 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD-VDLIRGLFERAIS 1766
            ++ A L+FK G  ++G ++FEG++  YPKR DLW++Y+D  I+ G  V+ IRGLF R   
Sbjct: 1792 AKFAQLQFKFGDPEKGHTLFEGLVDTYPKRLDLWNVYIDLHIKAGSTVETIRGLFNRMQK 1851

Query: 1767 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            L   PK+MK +FKK+L +E++ G++E    V Q+A +YV + ++
Sbjct: 1852 LKFNPKRMKSIFKKWLSFEQTHGDKESQGIVVQRAQDYVATLMS 1895



 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 179/752 (23%), Positives = 306/752 (40%), Gaps = 134/752 (17%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG------LAR---------AADALDPILDNEIEAN 53
           G+KL G++ +V   +L++ LP  L G      ++R         A D    +  N     
Sbjct: 236 GIKLAGMIIQVRPLELIVALPSHLLGHVPITEISRQYTQRLTETAEDDEGSVASNSDSDR 295

Query: 54  EDNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKR---------KIWLSLRLSLLYKGLS 101
            +N L     +F VGQ + C V++   +  +   R         K+ L++    +  G+ 
Sbjct: 296 TENALKGLDEMFTVGQWIRCSVIKTATEIPKGSLRASPLVRSALKVTLTIDPVHINSGID 355

Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLP---------------SFTGFLPRNNLAENSG 146
              +Q GM LT  VKSIED GYI+  G+                + T F+   +  + +G
Sbjct: 356 KSDLQGGMTLTGAVKSIEDRGYIIDLGISVDSNVDSATSQASANNLTAFISFADATKATG 415

Query: 147 IDVKPGLLLQGVVRSIDRTR--------KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 198
           ++ +    LQ  V  +   R            +S +   +S+ V       +ID ++P  
Sbjct: 416 VNHQDEPSLQWEVGQVIWCRINKLSENGATCMVSVNAQDISRSVL--TAATNIDSILPLH 473

Query: 199 MVSTRVQSILE-NGVMLSFLTYFTGTVDIFHLQ-NTFPTTNWKNDYNQHKKVNARILF-V 255
           MVS  + S++   G+ ++ L +F  T+ + HL+ ++    +    +   +K+ AR+L+  
Sbjct: 474 MVSCLITSVIPGQGLNVTLLGFFKATIQVPHLECHSTAGVDLSEKFKVGQKLRARVLWDT 533

Query: 256 DPTSRAVGLTLNPYLLHNR--------------AP--PSHVK-----------------V 282
            P+   V L  N  LL  +               P  P+H++                 +
Sbjct: 534 IPSKNHVSLEGNESLLGPKIFSLSIFDHVVKLDTPGLPTHLQNGERTRCDKIDQLLLYPI 593

Query: 283 GDIYDQSKVVRVDRGL-----------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 331
           G  +   ++ RVD              GL ++I   PV+     TISD     + K    
Sbjct: 594 GYTFQTVRIFRVDEEWGVYATCVNGEDGLPIEI-DPPVAFAHIATISDSFLSCLSKDSGP 652

Query: 332 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 391
           YK G+  + R+ G   ++G+    L+ S  E       D+  G ++ G +  + +   IV
Sbjct: 653 YKVGTTHKARVTGVSPVDGVLQLTLQPSVVEQAYMRSEDIPIGALMNGTIKKLTATNLIV 712

Query: 392 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKL 449
           +  GG  A+    H S+ +   P KKF  GA++  RVL     R  I +T +KTLV++  
Sbjct: 713 RIEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARVLYTNPDRDQIVLTLRKTLVRAD- 771

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR--SELGLDPGCEPSSMYHV 507
            I++SY  A+        ITK+E+    + F+   +G  PR  +E G     +P  ++  
Sbjct: 772 EIITSYESASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEAEAGYVESMKP--IFTP 829

Query: 508 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAK 567
           G++VK +I++     RRI  S      R + D+  KL    S V+DV    +  V  I  
Sbjct: 830 GRLVKVKIINVDVEKRRILASV----KRSTSDEASKL----STVIDVGDQVSAFVTAIRN 881

Query: 568 GY-----------------SKGTIPTEHLADHLE-HATVMKSVIKPGYEFDQLLVLDNES 609
            +                  KG I  E LA   +     +K+ +K G E   L+V   + 
Sbjct: 882 AFIQLDLRHINADPSSSEPVKGLISVEILAKKYDISPEALKNQLKAGDEVKDLIVHTKDK 941

Query: 610 SNLLLSAKYSLINSAQ-QLPSDASHIHPNSVV 640
              LL   Y   +  Q Q+      IH  ++V
Sbjct: 942 EKELLIVGYKSASMPQEQMTGPIRFIHDKNLV 973



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            ED+    ++ G +K +T+    + +    DA V   + SD     PEK+F  G  V  RV
Sbjct: 690  EDIPIGALMNGTIKKLTATNLIVRIEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARV 749

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
            L   P   ++ +TL+ +  R  +   I +  +  VG      I +VE   + I     + 
Sbjct: 750  LYTNPDRDQIVLTLRKTLVR--ADEIITSYESASVGTCAWAMITKVEEKFMLIEFFG-HT 806

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL   +E    +V++++ I+  G  VKVKI+ VD EKRRI   +K S
Sbjct: 807  KGLVPRAEAEAGYVESMKPIFTPGRLVKVKIINVDVEKRRILASVKRS 854



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 105/222 (47%), Gaps = 18/222 (8%)

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV------SEDDLVKLGSLVSGVVDVV 555
           S  Y VG   K R+    P    + L+  ++P+ V      SED  + +G+L++G +  +
Sbjct: 650 SGPYKVGTTHKARVTGVSPVDGVLQLT--LQPSVVEQAYMRSED--IPIGALMNGTIKKL 705

Query: 556 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 614
           T   ++V +  +G     +  +H +D ++HA   K    PG +   ++L  + +   ++L
Sbjct: 706 TATNLIVRI--EGGHDAVVWPDHYSD-VKHAHPEKK-FAPGAKVKARVLYTNPDRDQIVL 761

Query: 615 SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 674
           + + +L+ + + + S  S     +     +  + E    + F G   G  PR++A  G  
Sbjct: 762 TLRKTLVRADEIITSYES-ASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEAEAGYV 820

Query: 675 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
             +   +  G+ V+  I++V+ E  RI  S+K+S  +S +AS
Sbjct: 821 ESMKPIFTPGRLVKVKIINVDVEKRRILASVKRS--TSDEAS 860


>gi|38173705|gb|AAH38503.1| Pdcd11 protein [Mus musculus]
          Length = 394

 Score =  272 bits (696), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 138/282 (48%), Positives = 197/282 (69%), Gaps = 4/282 (1%)

Query: 1528 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1586
            E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AER
Sbjct: 108  EKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAER 167

Query: 1587 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1646
            AL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y 
Sbjct: 168  ALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYT 225

Query: 1647 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIK 1705
            ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +H+ 
Sbjct: 226  KSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVD 285

Query: 1706 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765
             I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I
Sbjct: 286  VIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVI 345

Query: 1766 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 346  HLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 387


>gi|141795595|gb|AAI39595.1| Pdcd11 protein [Danio rerio]
          Length = 932

 Score =  272 bits (695), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 220/844 (26%), Positives = 429/844 (50%), Gaps = 48/844 (5%)

Query: 1   MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE--D 55
           ++ ++++ G  + G V EV++ ++V+ LP GL G   +    DA   IL+++++ ++  +
Sbjct: 70  LHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAYTNILNDKLDTDDGLE 129

Query: 56  NLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 113
            ++P   +F  G L+ C+V  LD  K+  G   + LS+    + K L+   ++  M L+ 
Sbjct: 130 EVVPLSKLFTPGMLIRCVVSSLDSAKE--GHISLKLSINPKDVNKALNSVALKPAMTLSG 187

Query: 114 YVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 173
            V+S+EDHGY++  G+     FLP+   + +S  D+  G  +  ++  +  + +VV LS 
Sbjct: 188 CVESVEDHGYLVDIGIGGSKAFLPKK--STSSKQDLYVGQYVLVLIEDVKDSGRVVRLSQ 245

Query: 174 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
           +P  + K   +  +G ++D L+PG++V   V+ +  +G++++FL+ FTG VD  HL    
Sbjct: 246 NPQALVKACAETKQGWTLDNLLPGLLVHGCVKRVTPHGLIVTFLSSFTGVVDFLHLDEDK 305

Query: 234 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV--------KVGDI 285
            +T     Y++ +++ ARIL+V P++R VGL+L  +LL    PP           +VG++
Sbjct: 306 EST-----YSKGQEILARILYVQPSTRQVGLSLRSHLL----PPGGAVLDLHFSERVGEV 356

Query: 286 YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV-RILG 344
               ++  +    G L+ +      + A+V   ++ +E   +L+  +       + RI+ 
Sbjct: 357 VQGCQMTSLHHYSGALMKMLD---GSRAFVH-RNLLKEPKEELDTNHLMSQSQHILRIIN 412

Query: 345 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
           +  +E +    L+ S+ E   F+  D+K G +V+G VI +   G  V+    ++ + P  
Sbjct: 413 YSPIEQIYQATLRWSSIETPFFSCQDIKVGQIVEGTVIDLQKHGVYVRIGEHIRGMIPRI 472

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL 462
           H+++  +  P KKF  G ++  RVL V++++  + +T KK LV+S L I  SY++A    
Sbjct: 473 HLADVTLKNPEKKFYPGLKVKCRVLSVEAQKKLLILTRKKALVESTLPIFQSYSDARPGR 532

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I+HG++  I++ GC VRFY  V+G  P  EL  +    P  ++ VGQVVK +++      
Sbjct: 533 ISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEK 592

Query: 523 RRINLSFM-MKPTRVSEDDLVKLGSLVSGVVDVVTP----NAVVVYVIAKGYSKGTIPTE 577
           + + LSF  +    V E+ + K   +V  +VD        N + V +I +   +  +PT 
Sbjct: 593 KMLRLSFKSVTEEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEVSIIPEEV-QAFLPTT 651

Query: 578 HLADHLEHATVMKSVIKPGYEFDQLLVLDN-ESSNLLLSAKYSLINSAQQ--LPSDASHI 634
           HL+DH+ +   +   ++ G     L+ L N +   ++L+ K  L    +   +P + S +
Sbjct: 652 HLSDHVTNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLKAYIEDGAIPKNFSEL 711

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
                + G+V NI+  G F+ F   + G AP +   D    + S  + + Q+V + + ++
Sbjct: 712 QVGMQMVGWVKNIMPYGVFISFPYGVFGLAPIANMGDQFIKETSGIFDIDQTVVAKVTNL 771

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFL-LEEK--IAMLQSSKHNGSELKWVEGFIIGS 751
           + E  R  +SLK S  S ++  F       L+E+  I+ +++ + +   L  +    +G 
Sbjct: 772 DEEKQRFLVSLKLSELSLSENEFHTRLIQGLKERRNISEMRAGRGDSDVLWKLSALTVGD 831

Query: 752 VIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD 810
            ++  V ++ + G V+++ ++ S V    + +   G  +  G  + A IL +   +  V 
Sbjct: 832 QMKMIVGDTTEDGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKLNAVILHIDFVKSQVH 891

Query: 811 LSLK 814
           +SL+
Sbjct: 892 VSLR 895



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 2/167 (1%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            +D+    IV+G V ++   G ++ +   +   +   +L+D  +++PEK+F  G  V  RV
Sbjct: 437  QDIKVGQIVEGTVIDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRV 496

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
            LSVE   K + +T K +    ++     + S+   G I  G +  ++ +G  +     ++
Sbjct: 497  LSVEAQKKLLILTRKKALVE-STLPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYE-DV 554

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
             GL  + EL+ + V N E ++  G+ VKVK+LK D+EK+ + L  KS
Sbjct: 555  KGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEKKMLRLSFKS 601



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 112/513 (21%), Positives = 207/513 (40%), Gaps = 78/513 (15%)

Query: 893  GQSVIATVMALPSSSTAGRL----LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 948
            GQ V+  +  +  S    RL      L+KA +ET     K+     +   G LV   +  
Sbjct: 224  GQYVLVLIEDVKDSGRVVRLSQNPQALVKACAET-----KQGWTLDNLLPGLLVHGCVKR 278

Query: 949  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1008
            + P  L + F   F G +    +++DK        S +  GQ + ARI+    +P  ++ 
Sbjct: 279  VTPHGLIVTFLSSFTGVVDFLHLDEDKE-------STYSKGQEILARILYV--QPSTRQV 329

Query: 1009 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1068
                LS++  +L        L F E    +G+ V G          + ++  +  A + +
Sbjct: 330  ---GLSLRSHLLPPGGAVLDLHFSE---RVGEVVQG--------CQMTSLHHYSGALMKM 375

Query: 1069 LDSA---YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1125
            LD +      + L+E +         T H++S  + + +LR++     + I   T+  S+
Sbjct: 376  LDGSRAFVHRNLLKEPKEELD-----TNHLMS--QSQHILRIINYSPIEQIYQATLRWSS 428

Query: 1126 DNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
                 F    I  G IV G +  +     G+ V+IG H+ G +    L ++ + +P    
Sbjct: 429  IETPFFSCQDIKVGQIVEGTVIDLQKH--GVYVRIGEHIRGMIPRIHLADVTLKNP---- 482

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
             E +F P      G  VKC+VL +    +      L+ + +L              V++ 
Sbjct: 483  -EKKFYP------GLKVKCRVLSVEAQKKLLI---LTRKKAL--------------VEST 518

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
                +   D  P  I  G+V  +   GC +     +   V +  L+   V +PE+ F +G
Sbjct: 519  LPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVG 578

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            ++V  +VL  +   K + ++ K+       + +I    +  VG +V  ++ R    GL +
Sbjct: 579  QVVKVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKF-DFIVGKMVDARVCRKVLNGLEV 637

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1394
            +I    +      + LS DHV N   ++ A E+
Sbjct: 638  SIIPEEVQAFLPTTHLS-DHVTNCLPLWMALEE 669



 Score = 47.4 bits (111), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 153/385 (39%), Gaps = 47/385 (12%)

Query: 1031 FEEC-DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1089
            F  C D+ +GQ V G V  +      + I  H++  +  +  A     L+  +++F+ G 
Sbjct: 433  FFSCQDIKVGQIVEGTVIDLQKHGVYVRIGEHIRGMIPRIHLA--DVTLKNPEKKFYPGL 490

Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK---IL 1146
             V   VLS+  +KKLL L  +     + + T+ I       F    D   GRIS    + 
Sbjct: 491  KVKCRVLSVEAQKKLLILTRK---KALVESTLPI-------FQSYSDARPGRISHGFVVC 540

Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
                G +V+    + G V   EL    V++P    +E  F        GQ VK KVL+  
Sbjct: 541  IKEFGCIVRFYEDVKGLVPMQELTTETVTNP----EELFF-------VGQVVKVKVLKCD 589

Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1266
               +    + LS +S              T+ D   + + K + +   M+     + V +
Sbjct: 590  EEKK---MLRLSFKSV-------------TEEDVREEQIAKFDFIVGKMVDARVCRKVLN 633

Query: 1267 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAGRVLSVEPLSKRVEVTLKT 1324
                 ++  ++ A +  ++LSD           +  G  +   +       K + +T K 
Sbjct: 634  GLEVSIIPEEVQAFLPTTHLSDHVTNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKP 693

Query: 1325 SDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1383
                      I  N S L VG  ++G +K +  YG+FI+     + GL  ++ + +  + 
Sbjct: 694  HLKAYIEDGAIPKNFSELQVGMQMVGWVKNIMPYGVFISFP-YGVFGLAPIANMGDQFIK 752

Query: 1384 NIETIYRAGEKVKVKILKVDKEKRR 1408
                I+   + V  K+  +D+EK+R
Sbjct: 753  ETSGIFDIDQTVVAKVTNLDEEKQR 777



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 144/349 (41%), Gaps = 58/349 (16%)

Query: 1110 RPFQDGISDKTVDISNDNMQTFIHEGDI-VGGRISKILSGVGGLVVQIG-PHLYGRVHFT 1167
            +P +  + ++ + ++       +H  D+ VG  +   +  V    V +G P   G V + 
Sbjct: 48   KPKKQKVDEENIKLNTTTTVQILHLRDLTVGTLMLGCVKEVSDFEVVVGLPS--GLVGYL 105

Query: 1168 ELKNIC------VSDPLSGYDEG--QFDPLSG-YDEGQFVKCKVLEISRTVRGTFHVELS 1218
             + NIC      ++D L   D+G  +  PLS  +  G  ++C V  +     G  H+ L 
Sbjct: 106  PICNICDAYTNILNDKLD-TDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKEG--HISLK 162

Query: 1219 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
            L        S N  D++  +++          L P M + G V++V   G  + +     
Sbjct: 163  L--------SINPKDVNKALNSVA--------LKPAMTLSGCVESVEDHGYLVDIGIG-G 205

Query: 1279 AKVLLSNLSDGYVESPEKEFPIGKLV---------AGRVLSVEPLSKRVEVTLKTSDSRT 1329
            +K  L   S     S +++  +G+ V         +GRV+    LS+  +  +K      
Sbjct: 206  SKAFLPKKS----TSSKQDLYVGQYVLVLIEDVKDSGRVVR---LSQNPQALVKAC---- 254

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
            A   +   L NL  G +V G +KRV  +GL +T   ++  G+     L ED     E+ Y
Sbjct: 255  AETKQGWTLDNLLPGLLVHGCVKRVTPHGLIVTFL-SSFTGVVDFLHLDEDK----ESTY 309

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1438
              G+++  +IL V    R++ L ++S         L +   E   E ++
Sbjct: 310  SKGQEILARILYVQPSTRQVGLSLRSHLLPPGGAVLDLHFSERVGEVVQ 358


>gi|298708904|emb|CBJ30860.1| rRNA biogenesis protein rrp5 [Ectocarpus siliculosus]
          Length = 2344

 Score =  271 bits (693), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/294 (44%), Positives = 199/294 (67%), Gaps = 6/294 (2%)

Query: 1518 HAKKKEKEEREQEIR-AAEERLL--EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1574
             ++KK KE RE+E R AA ER L  E  AP T  ++ERL+ ++PN S +W+K+MAF LS+
Sbjct: 2050 RSRKKAKERREEEDRIAARERALQDEDAAPETAGDYERLLVATPNDSLLWVKFMAFKLSL 2109

Query: 1575 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634
            ADVE AR++ ER L+ ++ REE E+ N+WV+  NLE++YG+     +  V +RA Q  +P
Sbjct: 2110 ADVEGARAVCERGLKAVSFREEQERFNLWVSLINLEHKYGS--RSTLKAVSERACQNSNP 2167

Query: 1635 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR-RVQRLLKQQQEGVQAVVQR 1693
            KKV+L +  ++E+ ++++  +E+    +KKF+HS KVW+  ++ RL +    G +  ++R
Sbjct: 2168 KKVYLHMAEMHEKAQESEECEEVFQAAVKKFRHSQKVWVAYQLSRLKRGDDAGAREALKR 2227

Query: 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1753
            +L SL RHKH+  IS+ A  EF++G  +RGRS+FEG+++ YPKR DLW++Y D+E++ GD
Sbjct: 2228 SLQSLARHKHVSVISRFAQNEFEHGSVERGRSVFEGLMASYPKRLDLWNVYFDKEVKAGD 2287

Query: 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            +   R L ER   +    K+MK +FKKYL++E   G+E R+  VK KA EYV S
Sbjct: 2288 LRAARNLLERLTGMDFNAKRMKGVFKKYLQFEMEHGDEARVNAVKAKATEYVAS 2341



 Score =  206 bits (525), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 156/482 (32%), Positives = 226/482 (46%), Gaps = 71/482 (14%)

Query: 313 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 372
           AYV IS +++E V  +EK YK G  VR R+ G   +EG A   L+ S     V  + D+K
Sbjct: 511 AYVHISRISDERVEHVEKSYKPGQKVRCRVTGSSLVEGWAAASLRPSVLSAAVLRYQDLK 570

Query: 373 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 432
           PG +V+G+V AV++FG +V+   GV+AL P  H+ +  +  P  +FKVGA +  RVL V 
Sbjct: 571 PGSLVEGEVAAVEAFGLLVKLGEGVRALVPKNHLGDVGVKNPKARFKVGARVKGRVLTVD 630

Query: 433 --SKRITVTHKKTLVKSKLAILSSYAEATDRLITH--GWITKIEKHGCFVRFYNGVQGFA 488
             S + T+T K+++VK K  ++S+Y EA +R  T   G++TK+   G  V FY  V G  
Sbjct: 631 AGSSKSTLTLKRSMVKDKREVISTYTEAKEREGTACTGFVTKVAPFGLHVSFYGNVFGLL 690

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFM-----MKPTRVSED 539
           P   L      +PS  + VGQVV C + S    + P    ++L        M  T  +E+
Sbjct: 691 PSKALTKHGIQDPSEAFAVGQVVGCVVRSCDVTTYPPKLALSLDVAGKTEEMGGTGAAEE 750

Query: 540 D-----------LVKLGSLVSGVVDV-----------------VTPN------------- 558
           D               G  VSGVV                    TP              
Sbjct: 751 DESDGEGGAASCPFSPGDTVSGVVSANQDKEGKVVVDLNLPADTTPEDTSTKKKKKKSQA 810

Query: 559 -AVVVYVIAKGYSKGTIPTEHLADHLE-HATVMKSVIKPGYEFDQLLVLDNESSN----- 611
               V   A G+    +P  HL DH       + + + PG   DQLLVL+ +        
Sbjct: 811 KQAAVATTAPGF----LPHPHLGDHASVCGQTLAAQLTPGTVIDQLLVLEVDKMGVPMVT 866

Query: 612 ---LLLSA-KYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 667
              LLLSA   S  +    +P  AS++ P  ++ GYVC +   G FVRFLGR T   PRS
Sbjct: 867 LKPLLLSAVARSGEDKEAFVPGAASNVSPGDLIAGYVCRVESFGVFVRFLGRFTALCPRS 926

Query: 668 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 727
            A D    D S  +  G S R  +  V+ +TGR+ ++L ++   ++ A +++   LL E 
Sbjct: 927 MAADRMVEDPSGMFEEGDSARCVVQRVDEDTGRVVVTLDRTTVPTSPALYLRS--LLSET 984

Query: 728 IA 729
            A
Sbjct: 985 FA 986



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 169/335 (50%), Gaps = 45/335 (13%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE--------- 54
           + ++ G    GVV ++NE D+V+ LP  L G+ R  +  D        A           
Sbjct: 133 KKLNKGTLAMGVVFKINEHDMVVSLPSSLTGVVRRQEVSDYFHQKAASAKNTGSNRAGGR 192

Query: 55  ----------DNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 104
                     +  L  +F  GQ+V C ++ L    KE   R I LSLR S++ KGLSL  
Sbjct: 193 GRYFDESHAGEKPLTHLFREGQVVRCAIISL---AKEAKGRHIELSLRASVVNKGLSLSQ 249

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 164
           + +G  +   V S EDHGY++  GL   T FLP+ +  ++    ++PG  ++ V++++  
Sbjct: 250 LTKGSGVYGSVASAEDHGYVVTLGLDGVTAFLPKKDGPKDG---LEPGQPVEAVIQTVKA 306

Query: 165 TRKVVYLSSDPDTVSKCVTKDLKGISIDL--LVPGMMVSTRVQSILENGVMLSFLTYFTG 222
             + V L++DP  VS  VT   +G S DL  L PGM+V   V S+L NG+++SFL YF G
Sbjct: 307 AARTVTLTADPSLVSSAVT---QGTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAG 363

Query: 223 TVDIFHLQNTFP---------TTNWKNDYNQH-KKVNARILFVDPTSRAVGLTLNPYLLH 272
            VD     N  P            W+  +    + V AR+L VD  ++A+ LTL P+L+ 
Sbjct: 364 CVD----HNNMPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLME 419

Query: 273 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 307
            R P      G +  + +VVRVD  LGLLL +PST
Sbjct: 420 MRTPSGLPPTGALL-EGEVVRVDPALGLLLTVPST 453



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 130/504 (25%), Positives = 222/504 (44%), Gaps = 88/504 (17%)

Query: 983  FSNFKIGQTVTARII--AKSNKPDMKKSFLWE------------LSIKPSMLTVS----- 1023
               F +GQ +TAR++      + D K  F++             ++I  S L  +     
Sbjct: 1427 LEKFHVGQVLTARVLHFEDMTQKDPKSDFVFRLLELGLLDGDGTVTIDQSGLGEAEGEGE 1486

Query: 1024 ---EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL----DSAYEPS 1076
                + +   + EC    G+   G + +V     L+++S  ++  + +     D+     
Sbjct: 1487 EAVSVPAVPWWGECPPKAGEVHRGVITEVAEHGLLVSLSNSVRGLVPLAKLSSDATVTAK 1546

Query: 1077 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV---------DISNDN 1127
               EF  R  +G  V    +   + + +L LV  P +D + D  +         D+ +  
Sbjct: 1547 NFGEFFER-GMGLRVLVRRVEEERRRLILSLVGVPDRDTLPDSALPAMSPGFQADVKSKA 1605

Query: 1128 MQTFIHE----GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
             +    E    GD+V GR+   +       V +      R+    +  +CV++ LS  + 
Sbjct: 1606 ARNLTSESPDAGDVVEGRVDLTVKAWSPPCVMV------RLDGGCIGRVCVTE-LSEEEA 1658

Query: 1184 GQFDPLSGYDEGQFVKCKVLEI-----------SRTVRGTFH-------------VELSL 1219
             + +P+    +G  VKC+VL             SR  R                 VELSL
Sbjct: 1659 WKDNPVGRIKDGARVKCRVLPPLPKRSTEAQSKSRRRRSGDGDEDDEEGDGYMGPVELSL 1718

Query: 1220 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIE-DLSPNM--IVQGYVKNVTSKGCFIMLSRK 1276
            R      S               K  E I+ D +P +    + YV   +  GCF++L+  
Sbjct: 1719 RPCRVEASKN-------------KRKEAIKRDAAPKVGSTAKCYVVATSKSGCFVILNGG 1765

Query: 1277 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1336
            +  +VLL +LSD +V  P +EFP GKLVAG+VL+ E  + RV ++LK SD        + 
Sbjct: 1766 VSGRVLLKHLSDRFVSDPAQEFPAGKLVAGKVLAQEKETGRVSLSLKPSDVVGGEGGALT 1825

Query: 1337 NLSN-LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
              S  L  G  V G +  V+ +G+FI I ++ + G+CH SE +++ +D++  +Y  G+ V
Sbjct: 1826 WSSEILKPGLKVKGTVDTVKDFGVFIQIHDSKVRGMCHRSEAADETIDDLTQVYDEGDLV 1885

Query: 1396 KVKILKVDKEKRRISLGMKSSYFK 1419
            K  +LKV+K  +R+SLG+K+SYF+
Sbjct: 1886 KAVVLKVNKNNKRVSLGLKASYFE 1909



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 28/248 (11%)

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            Y  GQ V+C+V   S  V G      SLR S+          LS  V        + +DL
Sbjct: 530  YKPGQKVRCRVTG-SSLVEG--WAAASLRPSV----------LSAAV-------LRYQDL 569

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
             P  +V+G V  V + G  + L   + A V  ++L D  V++P+  F +G  V GRVL+V
Sbjct: 570  KPGSLVEGEVAAVEAFGLLVKLGEGVRALVPKNHLGDVGVKNPKARFKVGARVKGRVLTV 629

Query: 1312 EPLSKRVEVTLKTS---DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
            +  S +  +TLK S   D R    +     +    G    G + +V  +GL ++    N+
Sbjct: 630  DAGSSKSTLTLKRSMVKDKREVISTYTE--AKEREGTACTGFVTKVAPFGLHVSFYG-NV 686

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVK--VKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
             GL     L++  + +    +  G+ V   V+   V     +++L +  +    +     
Sbjct: 687  FGLLPSKALTKHGIQDPSEAFAVGQVVGCVVRSCDVTTYPPKLALSLDVAGKTEEMGGTG 746

Query: 1427 MSSEEESD 1434
             + E+ESD
Sbjct: 747  AAEEDESD 754


>gi|196015127|ref|XP_002117421.1| hypothetical protein TRIADDRAFT_32523 [Trichoplax adhaerens]
 gi|190579950|gb|EDV20037.1| hypothetical protein TRIADDRAFT_32523 [Trichoplax adhaerens]
          Length = 272

 Score =  271 bits (692), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 132/269 (49%), Positives = 192/269 (71%), Gaps = 3/269 (1%)

Query: 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
            +A  TPD+F+RLV S PN+S  W++YMA+ L  A+++K+R +AERAL+TI+ RE    LN
Sbjct: 2    NALETPDDFDRLVISEPNNSSGWLQYMAYYLQTAEIDKSRDVAERALKTISFRESQHLLN 61

Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1661
            IW+A  NLEN YG   +E + KVF+RA+Q  DPK V   L  +Y R+++++LAD+L   M
Sbjct: 62   IWIAMMNLENLYGT--QETLTKVFERAVQRNDPKDVFFHLSRIYIRSDKHELADKLFQNM 119

Query: 1662 IKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1720
            IK+F  S KVW+R  Q L + ++ EG + ++QR+L SLP+ KH+  I + A  EFK G  
Sbjct: 120  IKRFNTSKKVWIRYGQFLFEIKKFEGARKILQRSLKSLPKRKHLDTIVKFAQFEFKYGDH 179

Query: 1721 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1780
             RG ++FE +LS YPKRTDLWS+Y+D  I++GD++ +R LFE+ + ++L  KK+KFLFK+
Sbjct: 180  ARGATIFESVLSNYPKRTDLWSVYIDMVIKVGDIEQVRKLFEKVVKINLSSKKIKFLFKR 239

Query: 1781 YLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
            Y+E+E   G EE +E+VKQ A++YV S L
Sbjct: 240  YMEFESKYGNEESVEHVKQLAVDYVSSQL 268


>gi|26325946|dbj|BAB23064.2| unnamed protein product [Mus musculus]
          Length = 276

 Score =  271 bits (692), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 133/265 (50%), Positives = 188/265 (70%), Gaps = 3/265 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 7    PESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 66

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            VA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ K A EL  +M+K
Sbjct: 67   VALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKYKEAGELYNRMLK 124

Query: 1664 KFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
            +F+    VW++    +L + Q G    V+QRAL  LP  +H+  I + A LEF+ G  +R
Sbjct: 125  RFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVER 184

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
             +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL
Sbjct: 185  AKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIHLSLAPKRMKFFFKRYL 244

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
            +YEK  G E+ ++ VK KA+EYVE+
Sbjct: 245  DYEKQHGTEKDVQAVKAKALEYVEA 269


>gi|428178387|gb|EKX47262.1| hypothetical protein GUITHDRAFT_69529 [Guillardia theta CCMP2712]
          Length = 306

 Score =  269 bits (687), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 134/279 (48%), Positives = 195/279 (69%), Gaps = 4/279 (1%)

Query: 1531 IRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            +R  EE LL+ +  P T +EFER+V SSP+SS+VWIKYMAF L M +++KAR IA+RAL+
Sbjct: 27   LREKEEALLDPEKVPETAEEFERMVLSSPSSSYVWIKYMAFFLEMTEIDKAREIADRALK 86

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
            TI+ REE EK N+WVA  NLEN YG    E+++ VF++A +  D KK+H+ LLG++ER  
Sbjct: 87   TISFREEQEKFNVWVARLNLENLYGT--RESLMSVFEQACKLNDSKKMHMQLLGIFERGG 144

Query: 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQ-RLLKQQQEGVQAVVQRALLSLPRHKHIKFIS 1708
              ++ ++    + +KF+ SCKVWLR    +L     E    +++RAL ++P+ KH+K I 
Sbjct: 145  DAQVTEQFFKTLTRKFRKSCKVWLRYCTFKLRGAHPEAAGRMLERALEAIPKRKHVKLIH 204

Query: 1709 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1768
            + A +E+K G A+RGR++ EG++   PKR DLWS+++D E++ G V+  R L ERAI+L 
Sbjct: 205  KFATMEYKLGSAERGRTLMEGVVVSSPKRIDLWSVFVDLELKSGHVEAARQLLERAITLK 264

Query: 1769 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            L  ++ KFLFKK LE EK+ G+ ER+  VK+KA E+VES
Sbjct: 265  LKGRQAKFLFKKMLELEKTHGDAERVAEVKRKAREWVES 303


>gi|260841321|ref|XP_002613865.1| hypothetical protein BRAFLDRAFT_119888 [Branchiostoma floridae]
 gi|229299255|gb|EEN69874.1| hypothetical protein BRAFLDRAFT_119888 [Branchiostoma floridae]
          Length = 1638

 Score =  268 bits (685), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/282 (46%), Positives = 200/282 (70%), Gaps = 4/282 (1%)

Query: 1528 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1586
            ++E+  AE  LL++D  P++ D+F+RLV SSP+SS +W++YMAF L   +++KAR++AER
Sbjct: 1351 DKELYKAELALLDEDRPPQSADDFDRLVLSSPDSSILWLRYMAFHLHSTEIDKARTVAER 1410

Query: 1587 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1646
            AL+TI+ REE EKLN+WVA  NLEN YG   EE+++ VFQRALQ+ +   +   L+ +Y+
Sbjct: 1411 ALKTISFREEKEKLNVWVALMNLENMYGT--EESLMTVFQRALQHNEALTIFKQLVNIYK 1468

Query: 1647 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIK 1705
            RT + + AD+L   M+K+F+ +  VW+   Q L++ ++ E   +++QR+  SL +  H++
Sbjct: 1469 RTGKTQEADQLYGTMVKRFRGNKDVWIDYGQFLMENKRAEAAHSLMQRSFKSLDKQDHVQ 1528

Query: 1706 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765
             IS+ A++EFK G  +RGR+MFE ILS YPK+  +WS+YL+  I+ GD+D +R  F+R  
Sbjct: 1529 VISRFAVMEFKLGDVERGRTMFENILSNYPKQVSIWSVYLEMLIKTGDMDQVRLAFDRVT 1588

Query: 1766 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            +L L  K MK  FK+YLE+EK  G++  +  VK+KAMEYVE+
Sbjct: 1589 ALHLSTKNMKGFFKRYLEFEKKHGDDNTVSAVKRKAMEYVEA 1630



 Score =  245 bits (626), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 190/665 (28%), Positives = 325/665 (48%), Gaps = 67/665 (10%)

Query: 61  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 120
           ++  G +V C++ ++   K   G  +I LSL    + +GL   T++ GMV  +  + ++ 
Sbjct: 87  LYQAGAMVRCVIAEVVTSKS--GHPRILLSLNPRDVNQGLQGTTLKPGMVGISPFQGLKY 144

Query: 121 HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 180
             Y     L                    +P L L   VRS+    + V L+  P  + K
Sbjct: 145 KMYTAPMRL-------------------AQPLLCL---VRSVVSGGRSVNLTVSPTLLQK 182

Query: 181 CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 240
            V K+   +++D L PG +V   V S+  +G++  FL  FTG+V   HL      T    
Sbjct: 183 AVAKEDLDLTLDTLTPGTLVEATVTSVQNHGILAEFLG-FTGSVSRVHL-----PTKRAE 236

Query: 241 DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP------PSHVKVGDIYDQSKVVRV 294
            Y + ++V A IL++ PT++ VGL+    L   R        P+   +G +Y ++ VV V
Sbjct: 237 PYRKGQRVKACILYIHPTTKTVGLSFQSRLWDGRTLVDVQELPA---IGTVYKKAPVVHV 293

Query: 295 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 354
             G+G+ + + +    TP +  +S ++++ V  +E  +K G+    R++    L+G A  
Sbjct: 294 WSGIGVTMKLSA---ETPGFAAVSQLSDQPVESIENTFKPGTQHSCRVINCSPLDGQAIV 350

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
            LK S  E       D+KPG VV+GK+ +V S+G  V     V+ +    H+++  +  P
Sbjct: 351 SLKKSVIEQPFLRLQDLKPGQVVEGKITSVQSYGITVSLSNYVRGVVSKIHLADIILKNP 410

Query: 415 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
            KKF  G  +  RVL V +  +++ +THK+TL+ SKL I++SY  A      HG++  ++
Sbjct: 411 AKKFNEGDMIKCRVLNVATAGRQLALTHKRTLLTSKLPIMASYQAAKPGTWAHGFVLSVQ 470

Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 532
             GC V FYN V+G  P+ E+  +   +P  M++ GQVVKCR+MS  PA  ++ +S  +K
Sbjct: 471 DFGCIVMFYNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMSCNPALEKLTVS--LK 528

Query: 533 P----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 588
           P    T V+ D   ++G +V+  V  V P+++ V V     + G +P  HL+DH E+ ++
Sbjct: 529 PEKSGTPVAAD--FEVGKMVNVEVTEVKPDSLGVKVQGSD-TPGFLPMMHLSDHQENCSL 585

Query: 589 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN--SAQQLPSDASHIHPNSVVHGYVCN 646
           + S    G      +   + ++  +++ K SL    ++ Q+    S +  + V+ G+V  
Sbjct: 586 LLSRYSVGDVIQDAMYCCSRATGSMVTLKPSLKKAVTSGQVVETFSDLRTDRVLRGWVRT 645

Query: 647 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG--------QSVRSNILDVNSET 698
           +   G FV F G   G AP++       A  SKT+  G         SVR   LD+ +  
Sbjct: 646 VKPFGVFVEFPGGWVGLAPKADLT----AVASKTHCQGTNLNVGDSTSVRILHLDIPNNI 701

Query: 699 GRITL 703
             ++L
Sbjct: 702 AEVSL 706



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 202/990 (20%), Positives = 359/990 (36%), Gaps = 185/990 (18%)

Query: 418  FKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 475
            FK G +   RV+       +  V+ KK++++     L          +  G IT ++ +G
Sbjct: 328  FKPGTQHSCRVINCSPLDGQAIVSLKKSVIEQPFLRLQDLKPGQ---VVEGKITSVQSYG 384

Query: 476  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
              V   N V+G   +  L       P+  ++ G ++KCR+++   A R+  L+   K T 
Sbjct: 385  ITVSLSNYVRGVVSKIHLADIILKNPAKKFNEGDMIKCRVLNVATAGRQ--LALTHKRTL 442

Query: 536  VSED-------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH--- 585
            ++            K G+   G V  V     +V        KG +P   +    +    
Sbjct: 443  LTSKLPIMASYQAAKPGTWAHGFVLSVQDFGCIVMFYNN--VKGLLPKREMTQEAQEDPR 500

Query: 586  ------ATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 638
                    V   V+      ++L V L  E S   ++A + +    + +  + + + P+S
Sbjct: 501  KMFYKGQVVKCRVMSCNPALEKLTVSLKPEKSGTPVAADFEV---GKMVNVEVTEVKPDS 557

Query: 639  VVHGYVCNIIETGCFVRFLGRLT-GFAPRSKAVDGQR--ADLSKTYYVGQSVRSNILDVN 695
            +              V+  G  T GF P     D Q   + L   Y VG  ++  +    
Sbjct: 558  L-------------GVKVQGSDTPGFLPMMHLSDHQENCSLLLSRYSVGDVIQDAMY--- 601

Query: 696  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 755
                         CCS    S +     L++ +        +G  ++         V+ G
Sbjct: 602  -------------CCSRATGSMVTLKPSLKKAVT-------SGQVVETFSDLRTDRVLRG 641

Query: 756  KVHESNDFGVVVSF-------EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
             V     FGV V F          +D+    +     G  +  G      IL +     +
Sbjct: 642  WVRTVKPFGVFVEFPGGWVGLAPKADLTAVASKTHCQGTNLNVGDSTSVRILHLDIPNNI 701

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL--- 865
             ++SL++  +++  E    +  +  +               +  V   K  YL++ +   
Sbjct: 702  AEVSLRSDLLEQATEGKKIKMKKGGE--------------FSCTVLDAKAKYLLVGINGS 747

Query: 866  -----------PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLL 914
                       P +  ++G        T K    +     SVIA  M     +   +   
Sbjct: 748  GALAYVTRKWHPNHGSNVGMGDAQIGETSKVRVVRITQSGSVIA--MPAGKKTEGKKEGA 805

Query: 915  LLKAISETETSSSKRAKKKS---------------SYDVGSLVQAEITEIKPLELRLKFG 959
              KA    E  + KR + +S                  +G++V   +       L +K  
Sbjct: 806  EHKAAKRREEKNRKRKRDESETREETEADGQNPAEQLQLGAIVNVVVVATARDHLEVKIT 865

Query: 960  IGFH---GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK--------PDMKKS 1008
               H   G +HI+EV DD     E   +   +G  V  R+I  S+K        P  +  
Sbjct: 866  GQGHRQEGIVHISEVKDDVREG-EAPMAKLLVGSIVPGRVIGISHKKVKSLKSLPFSRPG 924

Query: 1009 F---LWELSIKPSMLTVSEIGSKLLFEE----CDV-SIGQRVTGYVYKVDNEWALLTISR 1060
            F   ++ +S++ S++   +   K L  +     DV    Q+V  Y+  + +    +++S 
Sbjct: 925  FEEVVYNVSLRESVVKADDKFKKFLLPDEKLRTDVYKEDQKVMFYLQSIQDSHVHVSVSP 984

Query: 1061 HLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1120
             ++ +L +L  +    +L+     F    A  G + SI++E   L L             
Sbjct: 985  GVQGKLDLLSCSDNVEDLKNPPAMFKPKCAYLGTITSIDRESSTLHL------------- 1031

Query: 1121 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1180
               S     T +  G +V  +++K + G   L +  G    G  + T+L     SD  S 
Sbjct: 1032 ---SRLGKATKLAPGLVVNAQVAKKVPGKLLLSLPFGGK--GFANLTDL-----SDSYSS 1081

Query: 1181 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1240
                  +PLS +   Q ++C VLE S       HV +SLR S  G      +D       
Sbjct: 1082 ------NPLSTFKVNQLLRCCVLECS----SKRHVRVSLRPSKIGGKVRKIND------- 1124

Query: 1241 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KE 1297
                 E +ED+    IV+GYV++    G F  LS K+  +V   + +  +V   +   K 
Sbjct: 1125 --PDYETVEDIVEGDIVRGYVEDCNKHGVFAALSHKVKGRVQYKHATSYFVRKQDELKKF 1182

Query: 1298 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            FP+GKLV  +VL V   S  +E++L   D+
Sbjct: 1183 FPVGKLVTAKVLEVSYKSSHLELSLLEKDT 1212



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 163/371 (43%), Gaps = 37/371 (9%)

Query: 353 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFE 410
           T + KA A E L  T   + PG +V+  V +V + G + +F G  G  +   LP     E
Sbjct: 178 TLLQKAVAKEDLDLTLDTLTPGTLVEATVTSVQNHGILAEFLGFTGSVSRVHLP-TKRAE 236

Query: 411 IVKPGKKFKVGAELVF---RVLGVKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITH 465
             + G++ K     +    + +G+ S +  +   +TLV  +   AI + Y +A    + H
Sbjct: 237 PYRKGQRVKACILYIHPTTKTVGL-SFQSRLWDGRTLVDVQELPAIGTVYKKAP---VVH 292

Query: 466 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP----A 521
            W       G  ++      GFA  S+L   P     + +  G    CR+++  P    A
Sbjct: 293 VW----SGIGVTMKLSAETPGFAAVSQLSDQPVESIENTFKPGTQHSCRVINCSPLDGQA 348

Query: 522 SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 581
              +  S + +P    +D  +K G +V G +  V    + V +    Y +G +   HLAD
Sbjct: 349 IVSLKKSVIEQPFLRLQD--LKPGQVVEGKITSVQSYGITVSL--SNYVRGVVSKIHLAD 404

Query: 582 HLEHATVMKSVIKPGYEFD----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IH 635
                 ++K+  K   E D    ++L +      L L+ K +L+ S  +LP  AS+    
Sbjct: 405 -----IILKNPAKKFNEGDMIKCRVLNVATAGRQLALTHKRTLLTS--KLPIMASYQAAK 457

Query: 636 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
           P +  HG+V ++ + GC V F   + G  P+ +     + D  K +Y GQ V+  ++  N
Sbjct: 458 PGTWAHGFVLSVQDFGCIVMFYNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMSCN 517

Query: 696 SETGRITLSLK 706
               ++T+SLK
Sbjct: 518 PALEKLTVSLK 528



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 106/255 (41%), Gaps = 41/255 (16%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            +  G +V G+I+ + S   G+ V +  ++ G V    L +I + +P   ++EG       
Sbjct: 367  LKPGQVVEGKITSVQSY--GITVSLSNYVRGVVSKIHLADIILKNPAKKFNEGDM----- 419

Query: 1192 YDEGQFVKCKVLEISRTVR--GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  +KC+VL ++   R     H    L S L  M+S  ++                 
Sbjct: 420  ------IKCRVLNVATAGRQLALTHKRTLLTSKLPIMASYQAA----------------- 456

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
               P     G+V +V   GC +M    +   +    ++    E P K F  G++V  RV+
Sbjct: 457  --KPGTWAHGFVLSVQDFGCIVMFYNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVM 514

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            S  P  +++ V+LK   S T         ++  VG +V  ++  V+   L + ++ ++  
Sbjct: 515  SCNPALEKLTVSLKPEKSGTPVA------ADFEVGKMVNVEVTEVKPDSLGVKVQGSDTP 568

Query: 1370 GLCHVSELSEDHVDN 1384
            G   +  LS DH +N
Sbjct: 569  GFLPMMHLS-DHQEN 582



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            +++DL P  +V+G + +V S G  + LS  +   V   +L+D  +++P K+F  G ++  
Sbjct: 363  RLQDLKPGQVVEGKITSVQSYGITVSLSNYVRGVVSKIHLADIILKNPAKKFNEGDMIKC 422

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYGLFITI 1363
            RVL+V    +++ +T K    RT   S++  +++      G    G +  V+ +G  +  
Sbjct: 423  RVLNVATAGRQLALTHK----RTLLTSKLPIMASYQAAKPGTWAHGFVLSVQDFGCIVMF 478

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             N N+ GL    E++++  ++   ++  G+ VK +++  +    ++++ +K
Sbjct: 479  YN-NVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMSCNPALEKLTVSLK 528



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 23/226 (10%)

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSL-DGMSSTNSSDLSTDVDTPGKHLEKIED 1250
            Y +GQ VK  +L I  T +    V LS +S L DG +  +  +L          +  +  
Sbjct: 238  YRKGQRVKACILYIHPTTK---TVGLSFQSRLWDGRTLVDVQELPA--------IGTVYK 286

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
             +P + V   +      G  + LS +      +S LSD  VES E  F  G   + RV++
Sbjct: 287  KAPVVHVWSGI------GVTMKLSAETPGFAAVSQLSDQPVESIENTFKPGTQHSCRVIN 340

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
              PL  +  V+LK    ++  +     L +L  G +V G+I  V+SYG+ +++ N  + G
Sbjct: 341  CSPLDGQAIVSLK----KSVIEQPFLRLQDLKPGQVVEGKITSVQSYGITVSLSNY-VRG 395

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +     L++  + N    +  G+ +K ++L V    R+++L  K +
Sbjct: 396  VVSKIHLADIILKNPAKKFNEGDMIKCRVLNVATAGRQLALTHKRT 441



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 159/402 (39%), Gaps = 75/402 (18%)

Query: 625  QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
            Q+LP+  +      VVH +       G  ++      GFA  S+  D     +  T+  G
Sbjct: 276  QELPAIGTVYKKAPVVHVWSG----IGVTMKLSAETPGFAAVSQLSDQPVESIENTFKPG 331

Query: 685  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
                  +++ +   G+  +SLK+S              ++E+    LQ  K         
Sbjct: 332  TQHSCRVINCSPLDGQAIVSLKKS--------------VIEQPFLRLQDLKP-------- 369

Query: 745  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQA 797
                 G V+EGK+     +G+ VS   +  V G ++   LA   +++       G +I+ 
Sbjct: 370  -----GQVVEGKITSVQSYGITVSLSNY--VRGVVSKIHLADIILKNPAKKFNEGDMIKC 422

Query: 798  AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 857
             +L+VA A R + L+ K   +       ++ QA K                 +  V  V+
Sbjct: 423  RVLNVATAGRQLALTHKRTLLTSKLPIMASYQAAKPG------------TWAHGFVLSVQ 470

Query: 858  ENYLVLSLPEYNHSIGYASVSDYN--TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL 915
            +   ++    YN+  G     +     Q+ P+K F  GQ V   VM+   +    +L + 
Sbjct: 471  DFGCIVMF--YNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMS--CNPALEKLTVS 526

Query: 916  LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDD 974
            LK     E S +  A   + ++VG +V  E+TE+KP  L +K  G    G + +  ++D 
Sbjct: 527  LKP----EKSGTPVA---ADFEVGKMVNVEVTEVKPDSLGVKVQGSDTPGFLPMMHLSDH 579

Query: 975  KSNVVENLFSNFKIGQTVTARIIAKSN--------KPDMKKS 1008
            + N    L S + +G  +   +   S         KP +KK+
Sbjct: 580  QEN-CSLLLSRYSVGDVIQDAMYCCSRATGSMVTLKPSLKKA 620


>gi|330801352|ref|XP_003288692.1| hypothetical protein DICPUDRAFT_152947 [Dictyostelium purpureum]
 gi|325081255|gb|EGC34777.1| hypothetical protein DICPUDRAFT_152947 [Dictyostelium purpureum]
          Length = 915

 Score =  262 bits (669), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 221/740 (29%), Positives = 371/740 (50%), Gaps = 106/740 (14%)

Query: 1123 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1182
            I N+ +   +  GD + G IS+I  GV  + V+I  +L G V   +             D
Sbjct: 228  IENNQLNKKLSVGDKILGTISEI--GVLSMKVKIYNNLSGEVKLIDCN-----------D 274

Query: 1183 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG---------MSSTNSSD 1233
            E +  P S Y  G  +K  V  IS+       + LSL+ SL G          ++     
Sbjct: 275  EFRDSPFSIYSVGSVIKVFVKSISKD-----GISLSLKKSLLGPEHKFNPKYKNNPTQER 329

Query: 1234 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1293
              T+V + G H              GY+     +   + L+ KL+  +    +   ++  
Sbjct: 330  AITNVFSHGSH------------AWGYIIEKNQQIVRVELADKLNGVIQNEVVGPFHMHL 377

Query: 1294 PEKEFPIGKLVAGRVL---SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ 1350
             E    +G L+   VL    VE  ++ +  +++     T        L  L   DI+  +
Sbjct: 378  CE----VGSLIQVTVLGDPKVEGSNQVLNCSIRIDKKIT--------LQTLKTDDILPLE 425

Query: 1351 IKRVESYGLFITIENTNLVGLCHVSELSEDHV--DNIETIYRAGEKVKVKIL--KVDKEK 1406
            + RVE++GLF+   ++N+  L H+ E S++ +  + +   +  G+ V  K +  K  KEK
Sbjct: 426  VTRVETFGLFV--RHSNITALVHIKESSDEKLTPEQLAQNFSVGDLVLGKCIGQKFSKEK 483

Query: 1407 RR--ISLGMK---------SSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA 1455
             +   +  +K          SYFK   DN   + E++S      + ++   S+   S  +
Sbjct: 484  NKNFFNFSLKPEHFVDVDTESYFKVSWDNQDPTEEQQS------INTHISLSVQLKSIQS 537

Query: 1456 VQDMDMESEDG-GSLVLAQIES-----RASVPPLEVNLDDEQPD-----MDNGISQNQGH 1504
            ++   +E E   G L   Q++      +    PLE   DDE        +++   + +  
Sbjct: 538  IKPYLVEKEQKKGELSAKQLQQNLNNDQEEQQPLEEAEDDEFKSTSLLSLEDSKKRKKDE 597

Query: 1505 TDEA------KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSS 1557
            TDEA      + +D+K  +  K+K K ++E+EI+  E+ L + + AP +P +FERL+  S
Sbjct: 598  TDEADEFEENQVVDKKKQKTEKEKSKNKQEEEIKEREDLLADHNVAPESPQDFERLLLGS 657

Query: 1558 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1617
            PNSS++WIKYM++ LS++++ KAR   E+A++ I   E  E+ NIW+A +NLEN YG   
Sbjct: 658  PNSSYLWIKYMSYYLSLSEISKARETGEKAIKKILATEVLEQRNIWIALYNLENLYGTA- 716

Query: 1618 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1677
             E ++K+FQR++QY DPK ++L ++ + E T + +  +E    + KK K S K+W R  +
Sbjct: 717  -ETLLKLFQRSIQYQDPKTMYLTIIQILESTNKVERCEEYFKMLFKKTKSSAKIWCRYGE 775

Query: 1678 RLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1736
             LLK Q+ +    V+ RAL  LP+ K IK I++   LE+K G  +RGR++FEG++S YP 
Sbjct: 776  FLLKNQKLDQFNGVLSRALECLPKKKQIKVINKFGQLEYKLGDVERGRTIFEGLVSNYPN 835

Query: 1737 RTDLWSIYLDQEIRLGDV--------DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV 1788
            RTD+W+IYLD E+R  +         D IR LF R ++L +  + +K  FK++L +EK  
Sbjct: 836  RTDIWNIYLDMELRDKESIKSNKDLRDKIRELFNRTVNLKVSDRNIKQFFKRFLTFEKDF 895

Query: 1789 GEEERIEYVKQKAMEYVEST 1808
            G    I+ VK+ A+++VE+ 
Sbjct: 896  GNPRSIDDVKKLALKFVENN 915


>gi|147794791|emb|CAN60355.1| hypothetical protein VITISV_028402 [Vitis vinifera]
          Length = 446

 Score =  256 bits (653), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 146/251 (58%), Positives = 180/251 (71%), Gaps = 41/251 (16%)

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            ++G++ ++ DFGVV++FE+++DV+GFI+++QL G T E GS +QA +LDVAK E LVDLS
Sbjct: 235  MKGRIQDAKDFGVVINFEKYNDVFGFISYYQLNGTTTERGSPVQAVVLDVAKTEHLVDLS 294

Query: 813  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 872
            LK  F+DR RE +SN Q                                      YN++ 
Sbjct: 295  LKPEFLDRHREDSSNSQ--------------------------------------YNYAT 316

Query: 873  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAK 931
            GYAS+SDYNTQKF +KQF   QSVIA VMALPS S  G LLL+LK++ E TETSSSKRAK
Sbjct: 317  GYASISDYNTQKFAKKQFPRRQSVIAIVMALPSPSIVGMLLLVLKSVIEATETSSSKRAK 376

Query: 932  KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 991
            KKSSY+VG LVQAEITEIKPLELRLKFGIGFHGR+HI EV D+  NV+EN FSNF+IGQT
Sbjct: 377  KKSSYNVGPLVQAEITEIKPLELRLKFGIGFHGRVHIIEVCDE--NVIENPFSNFRIGQT 434

Query: 992  VTARIIAKSNK 1002
            V+ARI+AK+NK
Sbjct: 435  VSARIVAKANK 445


>gi|167516894|ref|XP_001742788.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779412|gb|EDQ93026.1| predicted protein [Monosiga brevicollis MX1]
          Length = 265

 Score =  253 bits (647), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 124/264 (46%), Positives = 183/264 (69%), Gaps = 3/264 (1%)

Query: 1548 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1607
            ++ ER V +SPNSSF WI+Y+AF L + +++KAR++A RAL+TI    E+EK+N+WVA  
Sbjct: 4    EDHERAVMASPNSSFTWIQYIAFFLQLTELDKARAVAHRALKTIAPELEDEKMNVWVARL 63

Query: 1608 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1667
            NLEN +G+  +EA+ KVF  + Q  D  K+H+ LLG+Y R+E++   +E+   M+KKFK 
Sbjct: 64   NLENSFGS--QEALDKVFADSCQRMDALKMHMHLLGIYMRSEKHDQVEEVFQAMLKKFKS 121

Query: 1668 SCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
               VWL+  + LL Q+Q    +A+++RAL S+P+H H+  IS+  ILEFK G  +RGR++
Sbjct: 122  HKSVWLKYAEYLLNQKQFATARALLERALKSVPKHDHVDLISKFGILEFKLGDVERGRTI 181

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1786
            FE +++ +PKR D+W+I++DQE+R+ D D IR LFER ++L L  KKMK  FK++LE+EK
Sbjct: 182  FENVVTTHPKRVDMWNIWIDQELRIDDEDAIRALFERVVTLRLSTKKMKHFFKRFLEFEK 241

Query: 1787 SVGEEERIEYVKQKAMEYVESTLA 1810
                 + IE VK  A  YVE   A
Sbjct: 242  EQDNADGIERVKNLARAYVEEKAA 265


>gi|154800462|ref|NP_001082837.2| protein RRP5 homolog [Danio rerio]
          Length = 1816

 Score =  252 bits (644), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/329 (44%), Positives = 212/329 (64%), Gaps = 5/329 (1%)

Query: 1482 PLEVNLDDEQPDMDNGISQNQGHTDE-AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1540
            P E  L    P      +QN    +E  K+   K +R   K+E++  EQ+    E  L++
Sbjct: 1483 PWESTLGSLTPFAPADDNQNSSEDEEEVKSKPAKKSRKELKQEQQNTEQKPSKLEAELMD 1542

Query: 1541 KDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK 1599
                P     FERL+ SSP+SS +W++YMAF L    +E+AR++AERAL+TI+ REE EK
Sbjct: 1543 TSVRPDNSTAFERLLLSSPDSSLLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEK 1602

Query: 1600 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLY 1659
            LNIWVA  NLEN YG P  +++ KVF+RA+QYC+P  V+  L  +Y ++E+ K A+ L  
Sbjct: 1603 LNIWVAMLNLENMYGTP--DSLQKVFERAIQYCEPLLVYQQLADIYAKSEKIKEAESLYK 1660

Query: 1660 KMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1718
             M+K+F+    V+L     LL+Q+Q +   A++QRAL SL   +H+  I++ A LEF+ G
Sbjct: 1661 SMVKRFRQDKAVYLSYGTFLLRQRQSDAANALLQRALQSLSSKEHVDLIARFARLEFQFG 1720

Query: 1719 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1778
             +++ +SMF+ +L+ YPKRTDLWS+++D  ++ G    +R LF+R I LS+  KK+KF F
Sbjct: 1721 NSEKAKSMFDKVLTTYPKRTDLWSVFIDLMVKHGSQKEVRELFDRVIHLSVSVKKIKFFF 1780

Query: 1779 KKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            K+YLEYEK  G  E I+ VKQKA+EYVES
Sbjct: 1781 KRYLEYEKKNGTPETIQVVKQKALEYVES 1809


>gi|383851354|ref|XP_003701198.1| PREDICTED: protein RRP5 homolog [Megachile rotundata]
          Length = 1397

 Score =  250 bits (639), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 130/324 (40%), Positives = 213/324 (65%), Gaps = 8/324 (2%)

Query: 1489 DEQPDMD----NGISQNQGHTDEAKTIDEKNNRHAKKKEKE-EREQEIRAAEERLLEKDA 1543
            D++P+++       S+++  T+E     +K    A+++EKE ++E+EIR  EE L     
Sbjct: 1069 DDKPNLELLTKESSSESEDDTEEQPKQKKKKLSAAERREKERQKEREIRQREEALASNQL 1128

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P + D+F+RLV +SP+SS +W++YMA+ L   ++EKAR++A RA++TI+ REENE+LN+W
Sbjct: 1129 PNSVDQFDRLVLASPDSSIIWLQYMAYHLQSTEIEKARAVARRAVKTISFREENERLNVW 1188

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
             A+ NLE+++G    E++  VFQ A++  D  KV+  +L ++    +    ++ +  MI 
Sbjct: 1189 NAWLNLESKFGT--SESLNDVFQEAVRTNDSLKVYTHMLTVHLEAGRQFELEKTINTMIG 1246

Query: 1664 KFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
            KFK + +VW+     LLK   ++  + ++QRAL SLP   H+  +++ AILE K G  +R
Sbjct: 1247 KFKQNPQVWIECGSVLLKMGLKDKSRHIMQRALQSLPASDHVNLMARFAILENKYGDKER 1306

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
             +++FE ILS YPKR D+WS Y+D  ++ GDVD+ R + ERA+  +LPP+KMK LFKK++
Sbjct: 1307 AQTLFEQILSSYPKRVDIWSCYVDTLVKSGDVDIARKVLERAVIQTLPPRKMKSLFKKFI 1366

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVE 1806
             +E+  G +E +  V+Q A+EYVE
Sbjct: 1367 NFEEQHGTQENVARVQQMAVEYVE 1390



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 207/867 (23%), Positives = 381/867 (43%), Gaps = 85/867 (9%)

Query: 2   YPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEI-----EAN 53
           YP  IS G+ + G + EV + DL+I LPGGL G A+  D   +   +L N I     + N
Sbjct: 59  YP-TISEGLVVLGCIFEVTQYDLMISLPGGLIGRAQVTDISESYTNMLQNLIKTEDTQPN 117

Query: 54  EDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 113
           +   L  ++  G  V C V  +   +K     +I LSL   L+ + L +  +  G  +  
Sbjct: 118 DFKPLSELYSCGDYVVCYVKSIQPQEK----WQIVLSLDPKLINQNLDISYLHNGSKILC 173

Query: 114 YVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 173
            + SIEDHG+++  GL +   F+P     +N+       LL    VR I+    +  +  
Sbjct: 174 NISSIEDHGFVVDTGLTNIRAFIPT---PKNNEKYFCKQLLC--TVREIETNENMSTVKL 228

Query: 174 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
                   VT + +  S+D L+PG      V  IL NG+ +SF +  +G ++  +L    
Sbjct: 229 STKHKHIIVTNNTEIKSLDCLMPGTKFELYVNKILSNGLYVSFGSNHSGYINQLYLDEPL 288

Query: 234 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR 293
                   Y+   ++   +L++ PT +    +L    + +++    VK+GDI D++  + 
Sbjct: 289 A------KYSVGMEITGTLLYILPTVKFGYFSL----MVDKSRNDAVKLGDIIDEATTLF 338

Query: 294 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 353
            + G G+ L +    V     +  ++V   +  K+ +K+  GS  + R+L +  ++ +  
Sbjct: 339 RESG-GITLQLNKNGVRGFVPLKRTNV---DYDKIIEKFIPGSKHKCRVLTYSWMDAVYI 394

Query: 354 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIV 412
             ++ S  E   F+  D+KPG VV  ++I++++    V    G +       H+S+  + 
Sbjct: 395 CTMQHSLLEQKYFSLLDLKPGDVVNIRIISINAETGFVNVQLGKINGQVAPEHVSDAGL- 453

Query: 413 KPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 470
              KK KV  E+  +VLG+ + R     T K++L+ S L +LS   +A      HG I +
Sbjct: 454 SDLKKLKVDTEVEAKVLGISTARNKAYFTLKRSLLTSNLPVLSDIKDAECGSNYHGTIIQ 513

Query: 471 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 530
           I   G  V+F+  ++G+ PR+    +   E +  Y VGQ V  +I S      +I L+  
Sbjct: 514 INNSGLLVKFFGDIKGWIPRNTSNKE-ASEVNWNYSVGQTVLVQIKSVDQNLGKIILTI- 571

Query: 531 MKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI---AKGYSKGTIPTEHLADHLEH 585
             PT  +  E+++  +G  V G +   +   V + +     +  S G +P  H++  +E 
Sbjct: 572 --PTEDKKREENVFTIGEHVEGTIIESSTQGVYLRISKNDGQDVSTGFLPAGHMSPCMET 629

Query: 586 ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKY---SLINSAQQL------PSDASHIHP 636
           A ++ S   PG     L+     S  L+L+A +       S +QL      P     I P
Sbjct: 630 AALLASKCIPGDTLSALVFATTPS--LILTATFLTDEKYRSFEQLRVGDCIPCSIKDIEP 687

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
           + V               + +  ++G  P    V        K  ++ Q + + +  +N 
Sbjct: 688 DGV---------------KVILPVSGCTPFG-FVSYSNVSHFKLLHIHQILFAKVFSINR 731

Query: 697 ETGRI--TLSLKQSCCSSTDAS-----FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 749
           +   I  TLSLK+      D        +    L   K+A L  +K+   + + +    +
Sbjct: 732 KEKEINVTLSLKKVYNGLLDTYSKLIVAVDTLTLYFNKLAEL--AKNPFYDNRPISSVRL 789

Query: 750 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
           G  + GKV +  + G+VV+ E  +++ G ++    +G  ++ G  +   ++       LV
Sbjct: 790 GQRVTGKVEKITNSGLVVALE--NNLQGIVSKDHYSG-NLKVGDTVVGTVMWKNYVHELV 846

Query: 810 DLSLKTVFIDRFREANSNRQAQKKKRK 836
           +L+LK   +    E + N+Q +  + K
Sbjct: 847 ELTLKPTTMKSISE-DQNKQIEIPQEK 872


>gi|213405933|ref|XP_002173738.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces japonicus
            yFS275]
 gi|212001785|gb|EEB07445.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces japonicus
            yFS275]
          Length = 1703

 Score =  250 bits (638), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 123/265 (46%), Positives = 174/265 (65%), Gaps = 3/265 (1%)

Query: 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1602
            AP+ P +FER + S PNSS +WI YMA+ L + +++K+R I +RAL+ IN REE EKLN+
Sbjct: 1435 APQGPADFERKLLSEPNSSLLWIGYMAYHLGLNEIDKSREIGQRALKAINFREEEEKLNV 1494

Query: 1603 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1662
            WVA  NLE  YGN  EE + K F+ A  + D   V+  L G+  + ++  LA E + +M+
Sbjct: 1495 WVALLNLEVAYGN--EETLDKTFKEACHFYDELVVYERLCGILIKQQRLDLAKEYMERMV 1552

Query: 1663 KKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            K+F     VWL     L+     E  + ++QR+L SLP+  H+  I + A+LEFK G  +
Sbjct: 1553 KRFSQIASVWLNYATFLMSNDDAEAARGLLQRSLQSLPKKDHVSTIEKFALLEFKQGDPE 1612

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            RGR++FEG+LS YPKR DLW++ LD EI+ GDV ++R LF+R ++  L  KK KF+FKK+
Sbjct: 1613 RGRTIFEGLLSNYPKRLDLWNVLLDMEIKQGDVSIVRRLFQRLLANKLSLKKAKFVFKKW 1672

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVE 1806
            L +EK  G  E +E VKQ+A EYVE
Sbjct: 1673 LLFEKDHGTPEGVEDVKQRAAEYVE 1697



 Score =  241 bits (615), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 287/1153 (24%), Positives = 503/1153 (43%), Gaps = 89/1153 (7%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--- 57
            +++  G  ++G ++E+N  DL + LP  L G   +   +D+L   LD   E +EDN    
Sbjct: 122  KSVVEGTIVFGRISEINTLDLAVSLPNCLTGYVPITSISDSLSERLDKLDEVDEDNKSVA 181

Query: 58   ------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 111
                  L   + VGQ V   V  + +D     K++I LSLR   +  GL  +   +G V+
Sbjct: 182  QESFPDLLDFYTVGQWVRARVTSITNDSSSKKKKRIELSLRPQDVNGGLGADGFVKGSVI 241

Query: 112  TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKVVY 170
               V S EDHG  +  G+  FTGFLP    A N   +   G  +L  V    DR  ++  
Sbjct: 242  QTVVTSWEDHGIAMDLGIEDFTGFLPLG--AYNPETEFMEGQTVLCTVTSKKDRVFQLAM 299

Query: 171  LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
              + P  + K         S+  ++PG + +  +  +LENGV    +     T D+ H  
Sbjct: 300  HQASPKALDKFP-------SVQAILPGNLANVLITDVLENGVTGKLMGVLNVTSDLMH-S 351

Query: 231  NTFPTTNWKNDYNQHKKVNARILFVDPTSR-AVGLTLNPYLL-------HNRAPPSHVKV 282
            +        N++   K   ARIL+  P+S   V +T  P+ +           P   + +
Sbjct: 352  SLSQNERLANEFTIAKTRPARILYTIPSSPPTVAVTFLPHAVDFNKTSAEQENPLEKLPL 411

Query: 283  GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVR 341
            G   +++KV  V   LG+  D+    V   A+++ +SD   ++V      Y+  S  + R
Sbjct: 412  GFTVEEAKVSAVSPSLGIFCDVGVEGVRGFAHISRLSDSRVDKVDPSSGDYQLHSTHKAR 471

Query: 342  ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 401
            I GF  ++ L    L+ S  +       D+  G V+KG V+ + + G IV+   G+  L 
Sbjct: 472  ITGFSFVDNLFVLSLQESIIDQPFLRVDDIPVGKVIKGSVVRLFAQGVIVKLSEGINGLV 531

Query: 402  PLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEAT 459
            P  HM++ ++  P +KFK G  +  RVL V S  KR+ +T KK+L+ S L I+ SY    
Sbjct: 532  PTAHMADVQLHFPERKFKEGLPVKCRVLAVDSDRKRVLLTLKKSLLNSDLPIIDSYESVQ 591

Query: 460  DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
                  G   +I   G  V FYN V+GF P +E+      +    + VGQ V   +++  
Sbjct: 592  PGAKAVGVFARILNTGAVVEFYNHVRGFLPTAEMSEAYIQDARDHFKVGQTVSVTVVNCD 651

Query: 520  PASRRINLSFMMK---PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIP 575
            P +R++ LS   +     R      +++GS+VSG V   T N+V+V +   G S  G I 
Sbjct: 652  PETRKMRLSCREQNWTNERSQRFTDLEVGSVVSGAVSQKTENSVIVDL---GNSVNGVIQ 708

Query: 576  TEHLAD-HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQ--QLPSD 630
              HL+D   +    + S I+   +  ++LVL  D E   + L+ K SLI++A+   LP  
Sbjct: 709  VGHLSDGDAKKCQKILSKIRATTKLSEVLVLRKDLEKRIVFLTLKQSLIDAAKAGMLPKT 768

Query: 631  ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 690
             S +       G+V NI E G F+ F   +T  AP++   +      +  +   QS+   
Sbjct: 769  LSDLKEGVKYAGFVKNITEFGVFIEFANGVTALAPKAYLSENYVPLPAALFKPFQSLTCV 828

Query: 691  ILDVNSETGRITLSLK--QSCCSSTDASFMQEHFLLEE-KIAMLQSSKHNGSELKWVEGF 747
               ++ E  R  +SLK         D     ++ ++E    ++ ++  +   +L W    
Sbjct: 829  CFSIDMEKERALVSLKPLDKVNEKVDEITESKYVVIEPVDESITKAYDYTTGKLTW---G 885

Query: 748  IIGSV--IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV--A 803
            +I SV   +  +  + +    V   E  D +  I+      +T + G  IQ  +L    A
Sbjct: 886  VISSVKATQLNIDLAKNVHGRVDVSEAFDNFEDISDPSKPFSTFKKGDKIQVRVLGTHDA 945

Query: 804  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 863
            K  + + +S + V   +F E +      K+      +       T  A V       + +
Sbjct: 946  KNHKFLPISHR-VSPRQFLELSIKPSVMKQTEFSGEALTFKKGDTCIAFVNNTTPECIWV 1004

Query: 864  SLPE--YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL--LKAI 919
            S+            + +D  T     ++F  G ++  TV+      ++G +L L  ++ +
Sbjct: 1005 SVGSNLRGRIAALDASNDLETLNSITEKFPVGSAIQCTVL------SSGEILTLSAMEHV 1058

Query: 920  SETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV 979
             + ET S+           G  +   I+ I  + + ++      GR+  T+V+DD     
Sbjct: 1059 VDYETISA-----------GDKLLGRISNINDMGMIVQLPGALSGRVSRTDVSDDFETSP 1107

Query: 980  ENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS-EIGSKLLFEECDVSI 1038
             +LFS     Q V   +++  + P+ K +    LS + S      EI    +    DV +
Sbjct: 1108 NSLFSR---NQFVRVYVLS-VDVPNRKIA----LSTRASHFEEGKEIKDPEIKSFEDVEM 1159

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
             +   G+V  V +    +T+ R++  ++ I  +    S ++E++  F + + V   V+ +
Sbjct: 1160 NRVYRGFVTNVADTGLFVTLGRNVVGRVKI--AELFDSFIKEWKPHFQVSQLVKAKVVHV 1217

Query: 1099 NKEKKLLRLVLRP 1111
            ++EKK + L L+P
Sbjct: 1218 DQEKKRIELSLKP 1230



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 32/270 (11%)

Query: 458  ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 517
            A D+L+  G I+ I   G  V+    + G   R+++  D    P+S++   Q V+  ++S
Sbjct: 1066 AGDKLL--GRISNINDMGMIVQLPGALSGRVSRTDVSDDFETSPNSLFSRNQFVRVYVLS 1123

Query: 518  SIPASRRINLSFM---------MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 568
                +R+I LS           +K   +   + V++  +  G V  V    + V +    
Sbjct: 1124 VDVPNRKIALSTRASHFEEGKEIKDPEIKSFEDVEMNRVYRGFVTNVADTGLFVTL---- 1179

Query: 569  YSKGTIPTEHLADHLEHATVMKSVI---KPGYEFDQLLV-----LDNESSNLLLSAKYSL 620
                     ++   ++ A +  S I   KP ++  QL+      +D E   + LS K S 
Sbjct: 1180 -------GRNVVGRVKIAELFDSFIKEWKPHFQVSQLVKAKVVHVDQEKKRIELSLKPSR 1232

Query: 621  INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLS 678
            ++S +    + S I   S V G V    + G  +R  G   + G   +S+  D    D++
Sbjct: 1233 VSSKEASAKEFSEIEVGSNVDGTVIRCEDFGVLIRLDGTDNIVGLCHKSEIADTTVNDVT 1292

Query: 679  KTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            K Y  G  VR+++L V+ E  R+ L LK S
Sbjct: 1293 KLYSAGDKVRAHVLSVDPEKRRVALGLKSS 1322



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 119/281 (42%), Gaps = 41/281 (14%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
            + ISAG KL G ++ +N+  +++ LPG L G     D  D   D E   N      ++F 
Sbjct: 1062 ETISAGDKLLGRISNINDMGMIVQLPGALSGRVSRTDVSD---DFETSPN------SLFS 1112

Query: 64   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG--------LSLETVQEGMVLTAYV 115
              Q V   VL +D     +  RKI LS R S   +G         S E V+   V   +V
Sbjct: 1113 RNQFVRVYVLSVD-----VPNRKIALSTRASHFEEGKEIKDPEIKSFEDVEMNRVYRGFV 1167

Query: 116  KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS----IDRTRKVVYL 171
             ++ D G  +  G  +  G +    L ++   + KP   +  +V++    +D+ +K + L
Sbjct: 1168 TNVADTGLFVTLGR-NVVGRVKIAELFDSFIKEWKPHFQVSQLVKAKVVHVDQEKKRIEL 1226

Query: 172  SSDPDTVS--KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 229
            S  P  VS  +   K+   I +   V G ++        + GV++  L      V + H 
Sbjct: 1227 SLKPSRVSSKEASAKEFSEIEVGSNVDGTVIRCE-----DFGVLIR-LDGTDNIVGLCHK 1280

Query: 230  QNTFPTTNWKND----YNQHKKVNARILFVDPTSRAVGLTL 266
                 TT   ND    Y+   KV A +L VDP  R V L L
Sbjct: 1281 SEIADTT--VNDVTKLYSAGDKVRAHVLSVDPEKRRVALGL 1319



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 155/760 (20%), Positives = 294/760 (38%), Gaps = 123/760 (16%)

Query: 676  DLSKTYYVGQSVRSNILDVNSETG-----RITLSLKQSCCSSTDASFMQEHFLLEEKIAM 730
            DL   Y VGQ VR+ +  + +++      RI LSL+                        
Sbjct: 187  DLLDFYTVGQWVRARVTSITNDSSSKKKKRIELSLRPQDV-------------------- 226

Query: 731  LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 790
                  NG      +GF+ GSVI+  V    D G+ +      D  GF+    L     E
Sbjct: 227  ------NGG--LGADGFVKGSVIQTVVTSWEDHGIAMDL-GIEDFTGFLP---LGAYNPE 274

Query: 791  SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVN 850
            +  +    +L    +++           DR  +   ++ + K   K  + + +      N
Sbjct: 275  TEFMEGQTVLCTVTSKK-----------DRVFQLAMHQASPKALDKFPSVQAILPGNLAN 323

Query: 851  AIVEIVKENYLVLSLPEYNHSIGYASV-SDYNTQKFPQKQFLNGQSVIA------TVMAL 903
             ++  V EN +   L      +G  +V SD       Q + L  +  IA       +  +
Sbjct: 324  VLITDVLENGVTGKL------MGVLNVTSDLMHSSLSQNERLANEFTIAKTRPARILYTI 377

Query: 904  PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP-LELRLKFGI-G 961
            PSS     +  L  A+   +TS+ +    +      ++ +A+++ + P L +    G+ G
Sbjct: 378  PSSPPTVAVTFLPHAVDFNKTSAEQENPLEKLPLGFTVEEAKVSAVSPSLGIFCDVGVEG 437

Query: 962  FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1021
              G  HI+ ++D + + V+    ++++  T  ARI   S   +     L+ LS++ S++ 
Sbjct: 438  VRGFAHISRLSDSRVDKVDPSSGDYQLHSTHKARITGFSFVDN-----LFVLSLQESII- 491

Query: 1022 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1081
                  +      D+ +G+ + G V ++  +  ++ +S  +     +  +     +L   
Sbjct: 492  -----DQPFLRVDDIPVGKVIKGSVVRLFAQGVIVKLSEGING--LVPTAHMADVQLHFP 544

Query: 1082 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1141
            +R+F  G  V   VL+++ ++K + L L+      S    D+   +    +  G    G 
Sbjct: 545  ERKFKEGLPVKCRVLAVDSDRKRVLLTLKK-----SLLNSDLPIIDSYESVQPGAKAVGV 599

Query: 1142 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1201
             ++IL+   G VV+   H+ G +   E+    + D    +  GQ                
Sbjct: 600  FARILN--TGAVVEFYNHVRGFLPTAEMSEAYIQDARDHFKVGQ---------------- 641

Query: 1202 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1261
               +S TV         +R S    + TN            +  ++  DL    +V G V
Sbjct: 642  --TVSVTVVNCDPETRKMRLSCREQNWTN------------ERSQRFTDLEVGSVVSGAV 687

Query: 1262 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS-----VEPLSK 1316
               T     + L   ++  + + +LSDG  +  +K   + K+ A   LS      + L K
Sbjct: 688  SQKTENSVIVDLGNSVNGVIQVGHLSDGDAKKCQK--ILSKIRATTKLSEVLVLRKDLEK 745

Query: 1317 R-VEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
            R V +TLK S    A    +   LS+L  G    G +K +  +G+FI   N  +  L   
Sbjct: 746  RIVFLTLKQSLIDAAKAGMLPKTLSDLKEGVKYAGFVKNITEFGVFIEFAN-GVTALAPK 804

Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + LSE++V     +++  + +      +D EK R  + +K
Sbjct: 805  AYLSENYVPLPAALFKPFQSLTCVCFSIDMEKERALVSLK 844



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 104/243 (42%), Gaps = 23/243 (9%)

Query: 323  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
            E +  + +K+  GS ++  +L        +  IL  SA E +V  +  +  G  + G++ 
Sbjct: 1024 ETLNSITEKFPVGSAIQCTVLS-------SGEILTLSAMEHVV-DYETISAGDKLLGRIS 1075

Query: 383  AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTH 440
             ++  G IVQ PG +        +S+     P   F     +   VL V   +++I ++ 
Sbjct: 1076 NINDMGMIVQLPGALSGRVSRTDVSDDFETSPNSLFSRNQFVRVYVLSVDVPNRKIALST 1135

Query: 441  KKTLVKSKLAI----LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 496
            + +  +    I    + S+ +     +  G++T +   G FV     V G    +EL   
Sbjct: 1136 RASHFEEGKEIKDPEIKSFEDVEMNRVYRGFVTNVADTGLFVTLGRNVVGRVKIAELFDS 1195

Query: 497  PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-------VKLGSLVS 549
               E    + V Q+VK +++      +RI LS  +KP+RVS  +        +++GS V 
Sbjct: 1196 FIKEWKPHFQVSQLVKAKVVHVDQEKKRIELS--LKPSRVSSKEASAKEFSEIEVGSNVD 1253

Query: 550  GVV 552
            G V
Sbjct: 1254 GTV 1256



 Score = 47.8 bits (112), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 145/355 (40%), Gaps = 49/355 (13%)

Query: 26   ICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKR 85
            + +   LRG   A DA      N++E    N +   F VG  + C VL       EI   
Sbjct: 1004 VSVGSNLRGRIAALDA-----SNDLETL--NSITEKFPVGSAIQCTVLS----SGEI--- 1049

Query: 86   KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAEN 144
                 L LS +   +  ET+  G  L   + +I D G I+   LP + +G + R +++++
Sbjct: 1050 -----LTLSAMEHVVDYETISAGDKLLGRISNINDMGMIVQ--LPGALSGRVSRTDVSDD 1102

Query: 145  SGIDVKPGLL------LQGVVRSIDRTRKVVYLSS------DPDTVSKCVTKDLKGISID 192
               +  P  L      ++  V S+D   + + LS+      +   +     K  + + ++
Sbjct: 1103 --FETSPNSLFSRNQFVRVYVLSVDVPNRKIALSTRASHFEEGKEIKDPEIKSFEDVEMN 1160

Query: 193  LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 252
             +  G      V ++ + G+ ++      G V I  L ++F    WK  +   + V A++
Sbjct: 1161 RVYRGF-----VTNVADTGLFVTLGRNVVGRVKIAELFDSF-IKEWKPHFQVSQLVKAKV 1214

Query: 253  LFVDPTSRAVGLTLNPYLLHNRAPP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 308
            + VD   + + L+L P  + ++       S ++VG   D + +   D G+ + LD     
Sbjct: 1215 VHVDQEKKRIELSLKPSRVSSKEASAKEFSEIEVGSNVDGTVIRCEDFGVLIRLDGTDNI 1274

Query: 309  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
            V       I+D    +V KL   Y  G  VR  +L     +      LK+S F+ 
Sbjct: 1275 VGLCHKSEIADTTVNDVTKL---YSAGDKVRAHVLSVDPEKRRVALGLKSSYFDA 1326


>gi|388580414|gb|EIM20729.1| hypothetical protein WALSEDRAFT_69646 [Wallemia sebi CBS 633.66]
          Length = 1098

 Score =  250 bits (638), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 181/601 (30%), Positives = 310/601 (51%), Gaps = 45/601 (7%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K   K+ D     IV G VK +     FI +S  +DA V  ++ SD  ++ PEK++    
Sbjct: 501  KSFMKVSDAEVGAIVDGIVKKIADDRMFISISGNVDAIVWPTHYSDVKLKHPEKKYRSDM 560

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD---IVIGQIKRVESYGL 1359
             V  R+L+ E    RV  TLK    ++  +S++  +++    +   I    +  ++  G 
Sbjct: 561  KVKARILTAEADKNRVTATLK----KSLVKSDLPIITSYDASNKNVITYATVSGIKEKGA 616

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
             +   N N+     V E+SE +  + +     G+ VKV I+KV+ E +R+   ++ +  K
Sbjct: 617  IVDFYN-NVRAFLPVGEISESYTKHAKDALEVGQIVKVIIVKVEAEAKRMMASIRKTVPK 675

Query: 1420 NDADNL-QMSSEEESDEA-----IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL-- 1471
             + + L +    E+ D++      E+    N  ++  +  +A +D D ESEDG    L  
Sbjct: 676  EEREALIKERKAEQKDKSPAVVDEEDEEDVNAETMQIDGEIASKD-DSESEDGSVQGLEI 734

Query: 1472 ----AQIESRASVPPLEVNLDDEQPDMDN---------GISQNQGHTDEAKTID------ 1512
                ++ E       + ++  +++P M           G + +    D+ K  +      
Sbjct: 735  DEESSEEEEDEDEDEVTIDTTNKKPKMSTKEAKALDIGGFNWDGDDNDDEKKSNGSDEED 794

Query: 1513 ------EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIK 1566
                    NN   K+K+K +  +        L+ +  P + ++FERL+  SPNSS+VWI+
Sbjct: 795  EDSDAESTNNDDGKRKKKRKGTKHFEGDLTALMNEKPPESSNDFERLLLGSPNSSYVWIQ 854

Query: 1567 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1626
            YM+F L +++++KAR IA+RAL+TI  RE  EK NIW+A  NLEN +G+  +++  +VF+
Sbjct: 855  YMSFQLKLSEIDKAREIAKRALKTIGFRESQEKFNIWIALLNLENTFGD--DDSFEEVFK 912

Query: 1627 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQE 1685
             A  Y DP  +HL +  + E +E+   A ++  K  KKF      W+   +   +   Q 
Sbjct: 913  DATSYNDPLTMHLKVADILEASEKFDKASDVYVKSSKKFGAEVIFWVNYAEYNFRIGNQT 972

Query: 1686 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1745
              ++++ R+L SL +  HI  IS+ A +EF+ G A+RG+++FEGI+  +PK+ D W IY+
Sbjct: 973  AARSLLTRSLQSLEKRDHISCISKFAQMEFRLGDAERGKTIFEGIVESHPKQLDQWFIYV 1032

Query: 1746 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            D   R  D+  +R +FER +S  L  KK K +FKK+L  EK +G+E  I+ VKQ+A+ + 
Sbjct: 1033 DMLSRKEDLGGLRNVFERLLSHKLSTKKAKSVFKKWLTIEKELGDESGIDDVKQRAVAWN 1092

Query: 1806 E 1806
            E
Sbjct: 1093 E 1093



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 151/586 (25%), Positives = 270/586 (46%), Gaps = 62/586 (10%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG-----------LARAADALDPILDN----EIEAN 53
           G+K+   +  +   DL++ LP  L               R   A++   D+      + N
Sbjct: 109 GLKVLCQIVHITAIDLIVSLPEQLLAHIPITNISTHFTQRLDSAMNDDSDDGKSVSDDGN 168

Query: 54  ED-NLLPTIFHVGQLVSCIVLQLDDD------KKE-----IGKRKIWLSLRLSLLYKGLS 101
           ED   L  +F VGQ +   VL +  D      KKE        RK+ LS+    +  GL+
Sbjct: 169 EDLPELDELFQVGQWLRATVLHVHKDSNTGRVKKEGEEIIKASRKLELSIDPRSVNDGLT 228

Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS 161
            + +++   +   V+S+EDHGY++  G+P   GF+    + + SG D +    L G V S
Sbjct: 229 QKDLEKDFTIVGAVRSVEDHGYLVDLGVPDVDGFVSTTEM-DASGFDKE----LAGQVGS 283

Query: 162 I------DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 215
           I       ++ KVV LS +P T +K    +    +++ ++PG++++  V ++L  G+ + 
Sbjct: 284 ILPLTVTSKSNKVVNLSPNPSTFAKSYMNEAN--TLESVIPGVVLNAMVTAVLPAGLNVK 341

Query: 216 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLLHN 273
           F  +F GT+   H+   +   +    +   KKV AR++F  PTS  +   L+L P++++ 
Sbjct: 342 FFGFFDGTISKEHI--PYEKKSLSERFPVGKKVKARVIFDHPTSNPKRFSLSLLPHIVNL 399

Query: 274 RAPPSH-----------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
           +   +               G I +  +V+ V+   GL + IP + +    +V IS +A+
Sbjct: 400 QNSLTEKSEDGLTIAEAFGKGRIIEGVQVITVESEKGLYVTIPDSEL--LGFVHISQIAD 457

Query: 323 EEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 379
           +    L       K GS    R++G  +++ +    +K S  E      SD + G +V G
Sbjct: 458 DHTPSLSSSSGATKVGSLHTARVVGLSYVDKIVQLSIKPSVLEKSFMKVSDAEVGAIVDG 517

Query: 380 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRIT 437
            V  +      +   G V A+    H S+ ++  P KK++   ++  R+L  ++   R+T
Sbjct: 518 IVKKIADDRMFISISGNVDAIVWPTHYSDVKLKHPEKKYRSDMKVKARILTAEADKNRVT 577

Query: 438 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 497
            T KK+LVKS L I++SY  +   +IT+  ++ I++ G  V FYN V+ F P  E+    
Sbjct: 578 ATLKKSLVKSDLPIITSYDASNKNVITYATVSGIKEKGAIVDFYNNVRAFLPVGEISESY 637

Query: 498 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
                    VGQ+VK  I+     ++R+  S      +   + L+K
Sbjct: 638 TKHAKDALEVGQIVKVIIVKVEAEAKRMMASIRKTVPKEEREALIK 683



 Score = 45.4 bits (106), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 153/385 (39%), Gaps = 55/385 (14%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL- 429
           V PG+V+   V AV   G  V+F G         H+  +E     ++F VG ++  RV+ 
Sbjct: 320 VIPGVVLNAMVTAVLPAGLNVKFFGFFDGTISKEHIP-YEKKSLSERFPVGKKVKARVIF 378

Query: 430 ---GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
                  KR +++    L+   + + +S  E ++  +T   I +    G   R   GVQ 
Sbjct: 379 DHPTSNPKRFSLS----LLPHIVNLQNSLTEKSEDGLT---IAEAFGKG---RIIEGVQV 428

Query: 487 FAPRSELGLD---PGCEPSSMYHVGQVVKCRIMS-----------SIPASRRINLSFMMK 532
               SE GL    P  E     H+ Q+      S           S+  +R + LS++ K
Sbjct: 429 ITVESEKGLYVTIPDSELLGFVHISQIADDHTPSLSSSSGATKVGSLHTARVVGLSYVDK 488

Query: 533 PTRVS------EDDLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 581
             ++S      E   +K+     G++V G+V  +  + + + +   G     +   H +D
Sbjct: 489 IVQLSIKPSVLEKSFMKVSDAEVGAIVDGIVKKIADDRMFISI--SGNVDAIVWPTHYSD 546

Query: 582 -HLEHATVMKSVIKPGYEFD-----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 635
             L+H        +  Y  D     ++L  + + + +  + K SL+ S   + +     +
Sbjct: 547 VKLKHP-------EKKYRSDMKVKARILTAEADKNRVTATLKKSLVKSDLPIITSYDASN 599

Query: 636 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
            N + +  V  I E G  V F   +  F P  +  +           VGQ V+  I+ V 
Sbjct: 600 KNVITYATVSGIKEKGAIVDFYNNVRAFLPVGEISESYTKHAKDALEVGQIVKVIIVKVE 659

Query: 696 SETGRITLSLKQSCCSSTDASFMQE 720
           +E  R+  S++++       + ++E
Sbjct: 660 AEAKRMMASIRKTVPKEEREALIKE 684



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 167/434 (38%), Gaps = 45/434 (10%)

Query: 316 TISDVAEEEVRKLEKKYKEGSCVRVRIL--------GFRHLEG---------LATGILKA 358
           ++SD   E++ +L++ ++ G  +R  +L        G    EG         L   I   
Sbjct: 162 SVSDDGNEDLPELDELFQVGQWLRATVLHVHKDSNTGRVKKEGEEIIKASRKLELSIDPR 221

Query: 359 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 418
           S  +GL  T  D++    + G V +V+  G +V    GV  +      +E +     K+ 
Sbjct: 222 SVNDGL--TQKDLEKDFTIVGAVRSVEDHGYLVDL--GVPDVDGFVSTTEMDASGFDKEL 277

Query: 419 --KVGAELVFRVLGVKSKRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 475
             +VG+ L   V    +K + ++ +  T  KS +   ++       ++ +  +T +   G
Sbjct: 278 AGQVGSILPLTVTSKSNKVVNLSPNPSTFAKSYMNEANTLESVIPGVVLNAMVTAVLPAG 337

Query: 476 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-- 533
             V+F+    G   +  +  +     S  + VG+ VK R++   P S     S  + P  
Sbjct: 338 LNVKFFGFFDGTISKEHIPYEKKS-LSERFPVGKKVKARVIFDHPTSNPKRFSLSLLPHI 396

Query: 534 -------TRVSEDDLV-----KLGSLVSGVVDVVTPNAVVVYV-IAKGYSKGTIPTEHLA 580
                  T  SED L        G ++ GV  +   +   +YV I      G +    +A
Sbjct: 397 VNLQNSLTEKSEDGLTIAEAFGKGRIIEGVQVITVESEKGLYVTIPDSELLGFVHISQIA 456

Query: 581 D-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 638
           D H    +      K G      +V L      + LS K S++  +    SDA      +
Sbjct: 457 DDHTPSLSSSSGATKVGSLHTARVVGLSYVDKIVQLSIKPSVLEKSFMKVSDA---EVGA 513

Query: 639 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 698
           +V G V  I +   F+   G +      +   D +     K Y     V++ IL   ++ 
Sbjct: 514 IVDGIVKKIADDRMFISISGNVDAIVWPTHYSDVKLKHPEKKYRSDMKVKARILTAEADK 573

Query: 699 GRITLSLKQSCCSS 712
            R+T +LK+S   S
Sbjct: 574 NRVTATLKKSLVKS 587



 Score = 42.7 bits (99), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 24/107 (22%)

Query: 1298 FPIGKLVAGRVLSVEPLS--KRVEVTL-------------KTSDSRTASQSEINNLSNLH 1342
            FP+GK V  RV+   P S  KR  ++L             K+ D  T +++         
Sbjct: 366  FPVGKKVKARVIFDHPTSNPKRFSLSLLPHIVNLQNSLTEKSEDGLTIAEA-------FG 418

Query: 1343 VGDIVIG-QIKRVES-YGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
             G I+ G Q+  VES  GL++TI ++ L+G  H+S++++DH  ++ +
Sbjct: 419  KGRIIEGVQVITVESEKGLYVTIPDSELLGFVHISQIADDHTPSLSS 465



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 13/147 (8%)

Query: 964  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1023
            G +HI+++ DD +  + +     K+G   TAR++  S         + +LSIKPS+L   
Sbjct: 448  GFVHISQIADDHTPSLSSSSGATKVGSLHTARVVGLSYVDK-----IVQLSIKPSVL--- 499

Query: 1024 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1083
                K   +  D  +G  V G V K+ ++   ++IS ++ A   +  + Y   +L+  ++
Sbjct: 500  ---EKSFMKVSDAEVGAIVDGIVKKIADDRMFISISGNVDA--IVWPTHYSDVKLKHPEK 554

Query: 1084 RFHIGKAVTGHVLSINKEKKLLRLVLR 1110
            ++     V   +L+   +K  +   L+
Sbjct: 555  KYRSDMKVKARILTAEADKNRVTATLK 581


>gi|340727098|ref|XP_003401888.1| PREDICTED: protein RRP5 homolog [Bombus terrestris]
          Length = 1510

 Score =  248 bits (633), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/290 (42%), Positives = 198/290 (68%), Gaps = 4/290 (1%)

Query: 1519 AKKKEKE-EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADV 1577
            A+++E+E ++E EIR  EE L     P + D+F+RLV +SP+SS VW++YMA+ L   ++
Sbjct: 1218 AERREQERQKEHEIRQREEALANNLLPNSVDQFDRLVLASPDSSIVWLQYMAYHLQTTEI 1277

Query: 1578 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1637
            EKAR++A RA++TI+ REENEKLN+W A+ NLE++YG P  E++  VFQ A++  D  K+
Sbjct: 1278 EKARAVARRAVKTISFREENEKLNVWNAWLNLESKYGIP--ESLNDVFQEAVRSNDSLKI 1335

Query: 1638 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALL 1696
            +  +L ++    +    ++ +  MI KFKH  ++W    + L+K   ++  + ++QRAL 
Sbjct: 1336 YNHMLTVHVEAGRQIELEKTINTMIGKFKHIPEIWFNCGEALIKMGLRDKSRHIMQRALQ 1395

Query: 1697 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1756
            SLP  +H+  +++ AI+E K G  +R +++FE ILS YPKR D+WS Y+D  ++  D+D+
Sbjct: 1396 SLPASEHVNLMARFAIMENKFGDKERAQTLFEQILSSYPKRVDIWSCYIDSLVKSNDIDI 1455

Query: 1757 IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
             R + ERA++ +LPP+KMK LFKK++ +E+  G +E +  V+Q A+EYVE
Sbjct: 1456 ARKVLERAVAQTLPPRKMKILFKKFINFEEQHGTQEDVIRVQQMAVEYVE 1505



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 154/605 (25%), Positives = 278/605 (45%), Gaps = 39/605 (6%)

Query: 6   ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP--------ILDNEIEANEDNL 57
           IS G+ + G + EV   DL+I LPGGL G A+  D  +         +   + + NE   
Sbjct: 183 ISEGLVVLGCIYEVTNYDLLISLPGGLIGRAQITDISECYTNLLQSLVKSQDSQTNEFKS 242

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
           LP ++  G  V C V  +   ++     +I +SL  +L+ + L +  +  G  +   + S
Sbjct: 243 LPELYTCGDYVVCYVKAIQSQER----LQILISLEPNLINQSLDVNYLDSGSKIVCTISS 298

Query: 118 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 177
           IEDHGY++  GL +   F+P    + N     K  L     V++ + T  +  L+     
Sbjct: 299 IEDHGYVVDTGLINVRAFIPTKE-SGNEKCLCKQLLCYVKEVKTNENTSTIT-LTLKQKL 356

Query: 178 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 237
           V      ++K  S+D L+PG   +  ++ +L NG+ +S      G ++  +L    P + 
Sbjct: 357 VKAICETEIK--SLDSLMPGTKFNLSIKKVLSNGLCVSLDENNVGFINQTYLDE--PLSK 412

Query: 238 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRG 297
           + N+     K+   +L++ PT +    +    +  NR   + +K GD+  ++ V+  + G
Sbjct: 413 YSNNL----KITGTLLYILPTIKFAYFS--STIDKNR--DNTIKPGDVVKEATVLFRESG 464

Query: 298 LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 357
            G++L +  + +    +V+    + E    +EK +  G+  + RIL +  L+G+    ++
Sbjct: 465 -GIVLQLAKSGIR--GFVSFKRTSVEYDTIIEK-FAPGTTHKCRILSYSWLDGIYICTMQ 520

Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKPGK 416
            S  E   F+ SD KPG VV  K+  +D     V    G         H+S+ E +   K
Sbjct: 521 RSLLEQKYFSLSDFKPGDVVNVKITNIDKVNGFVNVQYGKFNGQIAPDHISD-EGLSALK 579

Query: 417 KFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 474
           K KV  E+  RVL V    K++ +T K++L+ S L IL++  +A      H  I +I KH
Sbjct: 580 KLKVDKEVEARVLFVHIGRKKVYLTLKRSLITSDLPILANIQDAKTDSKHHATIIQIHKH 639

Query: 475 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
           G  V+F+  V+G+ P + L  +     +  Y +GQ +  +I +    S  I LS   +  
Sbjct: 640 GILVKFFGDVKGWIPHTALDTET-FNINWNYSIGQTILVKIQTVNTDSGEITLSVANQDI 698

Query: 535 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI---AKGYSKGTIPTEHLADHLEHATVMKS 591
           +  E     +G  V+G +   +   + + +     +  S G +P  H++  +E A ++ S
Sbjct: 699 Q-DEKATFHIGEEVAGTIIESSTQGLYLKISKNEGQTVSTGFLPAGHMSPCMEIAALLAS 757

Query: 592 VIKPG 596
              PG
Sbjct: 758 KYVPG 762



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 106/241 (43%), Gaps = 22/241 (9%)

Query: 478 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 537
           V +   ++ FAP    G    C   S   +  +  C +  S+   +  +LS   KP  V 
Sbjct: 486 VEYDTIIEKFAP----GTTHKCRILSYSWLDGIYICTMQRSLLEQKYFSLS-DFKPGDVV 540

Query: 538 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
              +  +   V+G V+V             G   G I  +H++D  E  + +K  +K   
Sbjct: 541 NVKITNIDK-VNGFVNV-----------QYGKFNGQIAPDHISD--EGLSALKK-LKVDK 585

Query: 598 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
           E + ++L +      + L+ K SLI S   + ++      +S  H  +  I + G  V+F
Sbjct: 586 EVEARVLFVHIGRKKVYLTLKRSLITSDLPILANIQDAKTDSKHHATIIQIHKHGILVKF 645

Query: 657 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
            G + G+ P + A+D +  +++  Y +GQ++   I  VN+++G ITLS+         A+
Sbjct: 646 FGDVKGWIPHT-ALDTETFNINWNYSIGQTILVKIQTVNTDSGEITLSVANQDIQDEKAT 704

Query: 717 F 717
           F
Sbjct: 705 F 705


>gi|63102515|gb|AAH95720.1| Pdcd11 protein [Danio rerio]
          Length = 409

 Score =  244 bits (624), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 146/329 (44%), Positives = 212/329 (64%), Gaps = 5/329 (1%)

Query: 1482 PLEVNLDDEQPDMDNGISQNQGH-TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1540
            P E  L    P      +QN     +E K+   K +R   K+E++  EQ+    E  L++
Sbjct: 76   PWESTLGSLTPFAPADDNQNSSEDEEEVKSKPAKKSRKELKQEQQNTEQKPSKLEAELMD 135

Query: 1541 KDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK 1599
                P     FERL+ SSP+SS +W++YMAF L    +E+AR++AERAL+TI+ REE EK
Sbjct: 136  TSVRPDNSTAFERLLLSSPDSSLLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEK 195

Query: 1600 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLY 1659
            LNIWVA  NLEN YG P  +++ KVF+RA+QYC+P  V+  L  +Y ++E+ K A+ L  
Sbjct: 196  LNIWVAMLNLENMYGTP--DSLQKVFERAIQYCEPLLVYQQLADIYAKSEKIKEAESLYK 253

Query: 1660 KMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1718
             M+K+F+    V+L     LL+Q+Q +   A++QRAL SL   +H+  I++ A LEF+ G
Sbjct: 254  SMVKRFRQDKAVYLSYGTFLLRQRQSDAANALLQRALQSLSSKEHVDLIARFARLEFQFG 313

Query: 1719 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1778
             +++ +SMF+ +L+ YPKRTDLWS+++D  ++ G    +R LF+R I LS+  KK+KF F
Sbjct: 314  NSEKAKSMFDKVLTTYPKRTDLWSVFIDLMVKHGSQKEVRELFDRVIHLSVSVKKIKFFF 373

Query: 1779 KKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            K+YLEYEK  G  E I+ VKQKA+EYVES
Sbjct: 374  KRYLEYEKKNGTPETIQVVKQKALEYVES 402


>gi|350424715|ref|XP_003493888.1| PREDICTED: protein RRP5 homolog [Bombus impatiens]
          Length = 1529

 Score =  244 bits (623), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 125/310 (40%), Positives = 203/310 (65%), Gaps = 4/310 (1%)

Query: 1499 SQNQGHTDEAKTIDEKNNRHAKKKEKE-EREQEIRAAEERLLEKDAPRTPDEFERLVRSS 1557
            S ++   +E   +  K    A+++E+E ++E+EIR  EE L +   P + D+F+RLV +S
Sbjct: 1217 SDSEDEIEEKPKLKNKKLSAAERREQERQKEREIRQREEALADNLLPNSVDQFDRLVLAS 1276

Query: 1558 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1617
            P+SS +W++YMA+ L   ++EKAR++A RA++TIN REENEKLN+W A+ NLE++YG P 
Sbjct: 1277 PDSSIIWLQYMAYHLQTTEIEKARAVARRAVKTINFREENEKLNVWNAWLNLESKYGIP- 1335

Query: 1618 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1677
             E++  VFQ A++  D  K++  +L ++    +    ++ +  MI KFKH  +VW    +
Sbjct: 1336 -ESLNDVFQEAVRSNDSLKIYNHMLTVHVEAGRQIELEKTINTMIGKFKHIPEVWFNCGE 1394

Query: 1678 RLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1736
             L+K   ++  + ++QRAL SLP  +H+  + + AI+E K G  +R +++FE ILS YPK
Sbjct: 1395 ALVKMGLKDKSRHIMQRALQSLPASEHVNLMVRFAIMENKFGDKERAQTLFEQILSSYPK 1454

Query: 1737 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1796
            R D+WS Y+D  ++  D+D+ R + ERA+   LPP+KMK L+KK++  E+  G +E +  
Sbjct: 1455 RVDIWSCYVDSLVKSNDIDIARKVLERAVLQVLPPRKMKILYKKFINLEEQHGTQEDVIR 1514

Query: 1797 VKQKAMEYVE 1806
            V+Q A+EYVE
Sbjct: 1515 VQQMAVEYVE 1524



 Score =  157 bits (396), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 156/608 (25%), Positives = 279/608 (45%), Gaps = 45/608 (7%)

Query: 6   ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEIEA-----NEDNL 57
           IS G+ + G + EV   DL+I LPGGL G A+  D       +L + +++     NE   
Sbjct: 202 ISEGLVVLGCIYEVTNYDLLISLPGGLVGRAQITDISECYTNLLQSLVKSQDSLTNELKS 261

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIW---LSLRLSLLYKGLSLETVQEGMVLTAY 114
           L  ++  G  V C V       K I  ++ W   +SL  SL+ + L +  +  G  +   
Sbjct: 262 LSELYTYGDYVVCYV-------KAIQPQETWQISISLEPSLINQSLDVTYLDSGSKIVCT 314

Query: 115 VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 174
           + SIEDHGY++  GL +   F+     + N     K  L     V++ + T  ++    +
Sbjct: 315 ISSIEDHGYVVDTGLINVRAFISTKE-SGNKKCLCKQLLCYVKEVKTNENTSTIILTLKE 373

Query: 175 PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 234
               + C T ++K  S+D L+PG   +  ++ +L NG+ +S      G ++  +L    P
Sbjct: 374 KLVKAICET-EIK--SLDSLMPGTKFNLSIKKVLSNGLCVSLDENNIGFINQTYLDE--P 428

Query: 235 TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRV 294
            + + N+     K+   +L++ PT +    +    +  NR     +K GD+  ++ V+  
Sbjct: 429 LSKYSNNL----KITGTLLYILPTIKFAYFS--STIDKNR--DYTIKPGDVVKEATVLFR 480

Query: 295 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 354
           + G G++L +  + +    +V+    + E    +EK +  G+  + RIL +  L+G+   
Sbjct: 481 ESG-GIVLQLAKSGIR--GFVSFKRTSVEYDTIIEK-FAPGTTHKCRILSYSWLDGIYIC 536

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVK 413
            ++ S  E   F+ SD KPG VV  K+  +D     +    G         H+S+ E + 
Sbjct: 537 TMQRSLLEQKYFSLSDFKPGDVVNVKITNIDKVNGFINVQHGKFNGQIAPDHISD-EGLS 595

Query: 414 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 471
             KK KV  E+  RVL V    KRI +T K++L+ S L IL++  +A      H  I +I
Sbjct: 596 ALKKLKVDEEVEARVLSVHIDRKRIYLTLKRSLITSDLPILANIQDAKIDAKHHATIIQI 655

Query: 472 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531
            K G  V+F+  V+G+ P + L +      +  Y +GQ +  +I +    S  I L+   
Sbjct: 656 HKRGILVKFFGDVKGWIPHTALDMLTS-NVNWNYSIGQTISVKIQTVNTDSGEITLNVAN 714

Query: 532 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI---AKGYSKGTIPTEHLADHLEHATV 588
           +  +V E+    +G  V G +   +   + + +     +  S G +P  H++  +E A +
Sbjct: 715 QDIQV-EEATFDIGEEVEGTIIESSTQGLYLRICRNEGQTVSTGFLPAGHMSPCMEIAAL 773

Query: 589 MKSVIKPG 596
           + S   PG
Sbjct: 774 LASKYVPG 781



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 22/241 (9%)

Query: 478 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 537
           V +   ++ FAP    G    C   S   +  +  C +  S+   +  +LS   KP  V 
Sbjct: 505 VEYDTIIEKFAP----GTTHKCRILSYSWLDGIYICTMQRSLLEQKYFSLS-DFKPGDVV 559

Query: 538 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
              +  +   V+G ++V             G   G I  +H++D  E  + +K  +K   
Sbjct: 560 NVKITNIDK-VNGFINV-----------QHGKFNGQIAPDHISD--EGLSALKK-LKVDE 604

Query: 598 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
           E + ++L +  +   + L+ K SLI S   + ++      ++  H  +  I + G  V+F
Sbjct: 605 EVEARVLSVHIDRKRIYLTLKRSLITSDLPILANIQDAKIDAKHHATIIQIHKRGILVKF 664

Query: 657 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
            G + G+ P + A+D   ++++  Y +GQ++   I  VN+++G ITL++        +A+
Sbjct: 665 FGDVKGWIPHT-ALDMLTSNVNWNYSIGQTISVKIQTVNTDSGEITLNVANQDIQVEEAT 723

Query: 717 F 717
           F
Sbjct: 724 F 724


>gi|66804133|ref|XP_635864.1| HAT repeat-containing protein [Dictyostelium discoideum AX4]
 gi|60464203|gb|EAL62362.1| HAT repeat-containing protein [Dictyostelium discoideum AX4]
          Length = 909

 Score =  243 bits (620), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 251/944 (26%), Positives = 450/944 (47%), Gaps = 148/944 (15%)

Query: 926  SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN-DDKSNVVENLFS 984
            + K   +   + +G+ ++  + EI+  E+   F   + G++H+  +   DK    E++ +
Sbjct: 50   NKKEINENDKFKIGNKIEVCVKEIRDFEVITTFE-DYIGKLHVCNIPLPDKEG--ESVLN 106

Query: 985  NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC-----DVSIG 1039
            + K G T+   I+                SI+P+    ++I +  +FE+         +G
Sbjct: 107  SIKKGNTLNCFIV----------------SIEPT----AKIITLTMFEQLKPQSKQFKVG 146

Query: 1040 QRVTGYVYKVD--NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV-- 1095
            Q+V   VY +   NE     IS      + I+ +    S+ +  + +    K +   +  
Sbjct: 147  QQVDAIVYGLTSVNEITCW-ISPTQIGTIEIISNFKNISQFKSLKEKNTFVKCLIKSIGI 205

Query: 1096 -----LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
                 LSI KE                     ISN+ M+     GDI+ G I ++  G  
Sbjct: 206  DNKIYLSIGKE--------------------SISNEKMKV----GDIMIGLIKEV--GNL 239

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
             + VQ+  +L G V   +L            DE + +PLS Y     +   V  I     
Sbjct: 240  SIKVQLYNNLSGEVRLIDLN-----------DELRTNPLSIYKTDTLIMVCVKSI----- 283

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE-----DLSPNMIVQGYVKNVT 1265
            G   + LS   SL G+ +        +++   KH   ++     D +    V G+V   T
Sbjct: 284  GKEGILLSTYKSLLGLKTW-------EMNPKYKHQRSVKRSITTDFTVGAQVWGFVIEKT 336

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
             +   + L  +L A + + ++    + S +    +G+LV   V+S EP    +E +L+  
Sbjct: 337  QQIIRVELKGQLIAILQVEDVGPFLLSSCD----VGRLVR-VVISSEP---TIEGSLQVV 388

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-- 1383
             +             + V DI+  +I  +++YGLF+  +N  + GL H+SEL ++ VD  
Sbjct: 389  KAHLHVDKTALTPKTIEVNDIIPLEIISIKNYGLFV--KNKKVSGLAHISELDDEPVDPE 446

Query: 1384 NIETIYRAGEKVKVKILKVDKEKRR----ISLGMKSSYFKNDADNLQMSSEEESDEAIEE 1439
             I+ +Y  GE V  K +  +K K +        +K  +F++      +    + ++ IEE
Sbjct: 447  QIDKLYSVGEFVLGKCIGKEKNKEKGKTIFKFTLKPEHFQSIDMEQYLKCNWDQEDPIEE 506

Query: 1440 VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV-------------- 1485
            +    + + +  S++ ++    +  D  + +    +++  +  ++               
Sbjct: 507  IYQPLKPTKI-ISTLPIKSFLTQLSDLTTTINNNNKNKNKLETIKEQEEEEEEEQVENKQ 565

Query: 1486 -NLDDE--QPDMDNGI-SQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1541
             N DDE     + N I S+ +   ++ + IDE     +KKK+K E+ +     E+ + E+
Sbjct: 566  DNDDDEFKSTSLINSILSKKRKEINDDEQIDEDEITDSKKKQKTEKNKNKNKLEQEIQER 625

Query: 1542 D--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
            +        AP  P +FER++  +PNSS++WIK+M++ L ++++ KAR I ERA++ I  
Sbjct: 626  EDLLANNNVAPEGPQDFERMILGTPNSSYIWIKFMSYYLGLSEINKAREIGERAIKKIIP 685

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1653
             +  E+ NIW+A +NLEN YG P  ++++K+FQR++QY DPK ++L ++ + E T + + 
Sbjct: 686  TQVLEQRNIWIAMYNLENLYGTP--DSLLKLFQRSIQYQDPKTMYLTIINILENTGKFER 743

Query: 1654 ADELLYKMIKK-FKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTA 1711
             +E    + KK  KHS KVW R  + LLK    E   +++ RAL  LP+ K IK I++ A
Sbjct: 744  TEEYFKMLFKKDGKHSAKVWCRYGEFLLKCNNIEVFNSILSRALEILPKKKQIKVINKFA 803

Query: 1712 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV--------DLIRGLFER 1763
             LE+K G  +RGR++FEG++S YP RTD+W+IYLD E+R  +         + IR LF R
Sbjct: 804  QLEYKLGDIERGRTIFEGLVSNYPNRTDIWNIYLDMELRDKESIKSSKELKEKIRMLFNR 863

Query: 1764 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             I+L +  + +K  FK++L++EK  G       VK+ A+++VES
Sbjct: 864  TIALKVSDRNIKQFFKRFLQFEKEFGSNFTTNEVKKLAIKFVES 907


>gi|344303010|gb|EGW33284.1| hypothetical protein SPAPADRAFT_137651 [Spathaspora passalidarum NRRL
            Y-27907]
          Length = 1671

 Score =  242 bits (617), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/272 (44%), Positives = 177/272 (65%), Gaps = 4/272 (1%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++VEKAR I ERAL TIN REE E
Sbjct: 1399 LNTRAPQSVGDFERLLIGNPNSSIMWMNYMSFQLQLSEVEKAREIGERALNTINYREEQE 1458

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            K+NIW+A  NLEN +G+  +E +   F+RA QY D   +H  L+ +Y  +E+   ADEL 
Sbjct: 1459 KMNIWIALLNLENTFGS--DETLESTFKRACQYMDSFTMHQKLVAIYTMSEKYDQADELY 1516

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
              M KKF  +   W+     LL +   +  + V+ +AL  LP+  HI+ + + A LEF  
Sbjct: 1517 KVMTKKFGKNISTWVHYGSYLLDRDLHDQTREVLAKALQVLPKRDHIEVVRKFAQLEFVK 1576

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-DLIRGLFERAISLSLPPKKMKF 1776
            G  ++GRS+FEG++S+ PKR DLW++Y+DQEI+  D  D +  LFER ++  L  K+ KF
Sbjct: 1577 GDPEQGRSLFEGLISDAPKRIDLWNVYIDQEIKQDDSKDKVEDLFERVVTKKLSRKQAKF 1636

Query: 1777 LFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1808
             FKK+LE+E+  G+E+ +  VK KA EYV+++
Sbjct: 1637 FFKKWLEFEEDKGDEKMVARVKSKAAEYVQNS 1668



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 179/757 (23%), Positives = 336/757 (44%), Gaps = 69/757 (9%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL------ 57
           +N+  G  + G + ++ + D+ + L   L G      ++ P++   IE  E         
Sbjct: 91  KNLIPGTLVLGQIQKIGKFDITLALGDNLVGYVPIT-SISPLITKTIEELEKEDQSDESD 149

Query: 58  --------------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 103
                         L  IF VG  +   V    D++K    ++I  ++   ++ + +  E
Sbjct: 150 DEQEEEEKSKEFPELSAIFKVGSWLKAKVATQKDERK----KRIEFTIEPEVVNELIEDE 205

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVR 160
               G +L   V S+EDHG I+  G P  +GF+    L  N  I+   VKPGL++   + 
Sbjct: 206 DFVSGNLLQCSVVSVEDHGIIVDTGKPKISGFISNKELT-NGKIEIGSVKPGLVILASIV 264

Query: 161 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
           S  + R V    ++  T        +   S+D + PGM+V   +  + +NG+++      
Sbjct: 265 SQPKGRTVTLRPANVTTKKPISVTTIS--SVDAIQPGMIVDALIGEVTKNGLIVKVFGLV 322

Query: 221 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYLLHNRAPP 277
            G++ + HL+  F     K++Y+   KV AR+L V   +   R + L+L  ++L  +  P
Sbjct: 323 DGSISLAHLRE-FSLDKLKHNYSVGSKVKARVLAVLLKNGVKRLI-LSLAHHVL--KLEP 378

Query: 278 SHVK------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 331
                     VG   D+ ++V  D     +       +ST  Y  I +   +  + LE  
Sbjct: 379 EETDALEAFPVGHKLDEVEIVGKDDNYMYV------KLST-FYGQIHNSKIDSDKNLEID 431

Query: 332 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFG 388
           Y  GS  + R++G+  ++ L     ++S         SD+  G  +   +++ V  +S G
Sbjct: 432 YTIGSKHKSRVIGYNSVDDLLIMTFESSLINSEYLNASDIPLGTYIPSCEILKVLPESGG 491

Query: 389 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-S 447
             V+F    +   P   MS+ ++V P +KF+VG ++  RV+G + K + +T +K LV   
Sbjct: 492 IQVKFFDKFEGFVPTNQMSDIKLVYPERKFRVGTKVKGRVIGQQGKTVLITLRKALVNLE 551

Query: 448 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 507
              ILS + +A     T+  + K   +G  V F+  ++ F P++E+             +
Sbjct: 552 NDEILSKFEDAKIGFKTNAIVEKFVHNGAIVSFFGKLKAFLPKNEISETFVERAQDHLKL 611

Query: 508 GQVVKCRIMSSIPASRRINLSF-----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 562
           GQ+V  RI+     + R+ ++      + +  + +  +LV   S+ +  V     N++++
Sbjct: 612 GQIVSTRILDINTETERLLVTLKQATDLFQAQKATIAELVPGKSIANAFVVEKAKNSILI 671

Query: 563 YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYS 619
            +  +   +G I    L D + E        ++ G +  ++L+LD +  +  ++ + K S
Sbjct: 672 ELENENL-RGVIYDGQLTDGNYEQNRAAVKQLEIGSKL-EVLILDKDLRARTVIATGKRS 729

Query: 620 LINS--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
           LI +  + Q P+    +    +V GY+ ++   G FV F G+LTG      A  G  +DL
Sbjct: 730 LIEAVRSNQFPTTFEEVSEGKLVKGYIKSVTNFGLFVSFAGKLTGLVLAKYA--GDVSDL 787

Query: 678 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
           SK +Y  QSV   ++ ++ E  R  LSL  +    +D
Sbjct: 788 SKKFYKHQSVSCRVIRLDQENKRFLLSLNTNGEVDSD 824



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 161/734 (21%), Positives = 289/734 (39%), Gaps = 130/734 (17%)

Query: 739  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV---- 794
            +EL   E F+ G++++  V    D G++V       + GFI++ +L    +E GSV    
Sbjct: 199  NELIEDEDFVSGNLLQCSVVSVEDHGIIVD-TGKPKISGFISNKELTNGKIEIGSVKPGL 257

Query: 795  -IQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 853
             I A+I+   K  R V L          R AN   +         +   +     V+A++
Sbjct: 258  VILASIVSQPKG-RTVTL----------RPANVTTKKPISVTTISSVDAIQPGMIVDALI 306

Query: 854  -EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 912
             E+ K   +V      + SI  A + +++  K  +  +  G  V A V+A+   +   RL
Sbjct: 307  GEVTKNGLIVKVFGLVDGSISLAHLREFSLDKL-KHNYSVGSKVKARVLAVLLKNGVKRL 365

Query: 913  LLLLK----AISETETSSSKRAKKKSSYDVG-SLVQAEITEIKPLELRLKFGIGFHGRIH 967
            +L L      +   ET + +      ++ VG  L + EI       + +K    F+G+IH
Sbjct: 366  ILSLAHHVLKLEPEETDALE------AFPVGHKLDEVEIVGKDDNYMYVKLST-FYGQIH 418

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1027
             ++++ DK     NL  ++ IG    +R+I  ++  D+         I    L  S+I  
Sbjct: 419  NSKIDSDK-----NLEIDYTIGSKHKSRVIGYNSVDDLLIMTFESSLINSEYLNASDIPL 473

Query: 1028 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1087
                  C+          + KV  E   + +    K + F+  +     +L   +R+F +
Sbjct: 474  GTYIPSCE----------ILKVLPESGGIQVKFFDKFEGFVPTNQMSDIKLVYPERKFRV 523

Query: 1088 GKAVTGHVLS-------INKEKKLLRL----VLRPFQDG-ISDKTVDISNDNMQTFIHEG 1135
            G  V G V+        I   K L+ L    +L  F+D  I  KT    N  ++ F+H G
Sbjct: 524  GTKVKGRVIGQQGKTVLITLRKALVNLENDEILSKFEDAKIGFKT----NAIVEKFVHNG 579

Query: 1136 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS-GYDEGQFDPLSGYDE 1194
             IV                           F +LK     + +S  + E   D L     
Sbjct: 580  AIVS-------------------------FFGKLKAFLPKNEISETFVERAQDHLK---L 611

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ V  ++L+I+     T  + ++L+ + D   +  ++               I +L P 
Sbjct: 612  GQIVSTRILDINTE---TERLLVTLKQATDLFQAQKAT---------------IAELVPG 653

Query: 1255 M-IVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVE---SPEKEFPIGKLVAGRVL 1309
              I   +V         I L +  L   +    L+DG  E   +  K+  IG  +   +L
Sbjct: 654  KSIANAFVVEKAKNSILIELENENLRGVIYDGQLTDGNYEQNRAAVKQLEIGSKLEVLIL 713

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
              +  ++ V  T K S       ++       +  G +V G IK V ++GLF++     L
Sbjct: 714  DKDLRARTVIATGKRSLIEAVRSNQFPTTFEEVSEGKLVKGYIKSVTNFGLFVSFAG-KL 772

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1428
             GL  +++ + D  D  +  Y+  + V  +++++D+E +R  L            +L  +
Sbjct: 773  TGLV-LAKYAGDVSDLSKKFYKH-QSVSCRVIRLDQENKRFLL------------SLNTN 818

Query: 1429 SEEESDEAIEEVGS 1442
             E +SDE I  V +
Sbjct: 819  GEVDSDEVINPVDT 832



 Score = 44.7 bits (104), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 103/265 (38%), Gaps = 40/265 (15%)

Query: 574  IPTEHLADHLE-HATVMKSVIKPG-YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 631
            I + ++ D L  ++  ++ V  P  Y    ++ +D ++  + +S +    ++  +  +  
Sbjct: 1059 IASAYITDALNNYSDKLEDVFHPSDYVIASVVDIDTDAKKVAVSLRND--DAVDKTINSI 1116

Query: 632  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
            + +    +V G+V NI   G +V     +      +   D    D  K +  GQ V   +
Sbjct: 1117 ADLSRGDIVKGFVKNIANNGVYVALGRSVYALVRITDLSDSYLKDWKKFFKPGQLVLGKV 1176

Query: 692  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG--SELKWVEGFII 749
                 E GR+ L+LK+S                            NG  + LK  E   +
Sbjct: 1177 -SACKEEGRVLLTLKESEV--------------------------NGELNYLKKFEDLEV 1209

Query: 750  GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV 802
            G V EG V    DFGV V  +   ++ G     ++A   VE+       G  ++  IL V
Sbjct: 1210 GDVFEGSVKRVTDFGVFVKLDGTVNISGLCHQSEIAENKVENIAGLFGEGDRVKVKILKV 1269

Query: 803  AKAERLVDLSLKTVFIDRFREANSN 827
             + ++ + L +K  +     + N +
Sbjct: 1270 NQEKKQLSLGMKASYFTTASDVNED 1294


>gi|332030070|gb|EGI69895.1| Protein RRP5-like protein [Acromyrmex echinatior]
          Length = 1313

 Score =  239 bits (611), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 227/389 (58%), Gaps = 11/389 (2%)

Query: 1426 QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV 1485
            Q+ ++E   E   EV    +S + +    ++ + D +S D   +   ++  R  VP    
Sbjct: 925  QVPNKENKKETKREVEE-EKSKIKDIDENSLSESDEDSVDESEMKANKLVKRLRVPEFGF 983

Query: 1486 NLDDEQ-----PDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEER--EQEIRAAEERL 1538
            + D +      P+++      Q   +E K   +K    A ++ ++ER  E+EIR  EE L
Sbjct: 984  SWDIKAKLAAFPNVETSSDDEQEFEEELKQKKKKKKLSATERREQERQKEREIRQREEAL 1043

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            +   AP + D+F+RL+ SSP+SS VW++YMA+ L   +++KAR++A RA++TIN REENE
Sbjct: 1044 VSNQAPNSIDQFDRLILSSPDSSLVWLQYMAYHLQATEIDKARAVARRAIKTINFREENE 1103

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            +LN+W A+ NLE+ YG    E++  VFQ A++  D  KV++ +L ++    +    ++L+
Sbjct: 1104 RLNVWNAWLNLESRYGTA--ESLNDVFQEAVRTNDAYKVYMHMLTIHADAGRKTELEKLI 1161

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
              +I KFK   + W+     LLK   +E  + ++QRAL SLP  +H+  + + A LE K 
Sbjct: 1162 GTVISKFKQDPQTWIDCGAALLKIGMKEKSRQIMQRALQSLPASQHVNLLVRFANLENKL 1221

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1777
            G  +R +++FE ILS YPKR D+WS Y+D  I+  D+DL R + E+A   +L P+KMK L
Sbjct: 1222 GDKERAQTLFENILSSYPKRIDVWSCYVDCLIKSKDIDLARKVLEQACVQTLSPRKMKIL 1281

Query: 1778 FKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            F K++ +E+  G  E +  V+Q A +YVE
Sbjct: 1282 FMKFINFEEKYGTSEAVARVRQMAADYVE 1310



 Score =  108 bits (270), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 206/443 (46%), Gaps = 26/443 (5%)

Query: 159 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
           ++++D    V+ LS+    +      D+  +S+D+L PG  +S  V  +L NG+ + F  
Sbjct: 142 IKTVDNM-SVIKLSTKRKKIDSANVHDI--MSLDVLTPGTKLSLYVTKVLSNGLQVRFGK 198

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS 278
              G ++  +L N   T      Y  + +V   +L++ PT +    +L    L + +   
Sbjct: 199 NNVGYINRIYLNNPLST------YVDNMEVIGTLLYILPTVKLAYFSL----LTDISEKE 248

Query: 279 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 338
            + VG+I + ++V+  +   G++  +  + +    Y+++         K+  ++KE S  
Sbjct: 249 KLPVGNIINNARVLYRESS-GIIFKLSKSGLR--GYISLRR-TNVPFTKIPIEFKESSTH 304

Query: 339 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG-V 397
           + R+L +  +E      ++    +   F+ SD+  G ++   ++ +++  + +    G +
Sbjct: 305 KCRVLAYNWMEHFYVCTMEEEILKQKYFSASDLSIGDILTVTIVHIETSRSNIHVQAGKI 364

Query: 398 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYA 456
             + P+ H+S+  +     K KVG  +  RVL   K  ++  T K++LVKSKL +L  + 
Sbjct: 365 CGIVPMEHISDSGL-SALHKLKVGDNVEARVLDKNKINQVKFTLKQSLVKSKLPVLHDFG 423

Query: 457 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 516
           EA   L  HG I  I K+G  VRFY  ++G+ PR  L  D   + +  + VGQ V   + 
Sbjct: 424 EAKCGLKYHGTIGIINKNGMLVRFYGIIKGWVPRITLNSD-TYDMNWNFSVGQTVTVCVE 482

Query: 517 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK---GT 573
           S      R+ L  + +  + S    + +G ++ G V   +   + + +  +       G 
Sbjct: 483 SVEKDQCRMTLRIVSEKEKQSIS--LSIGDIIEGTVSESSIKGIYLKIQKEDNENVVTGF 540

Query: 574 IPTEHLADHLEHATVMKSVIKPG 596
           +P+ H+A  +E  +++ S   PG
Sbjct: 541 LPSGHMAPCIEVGSLLASRCSPG 563



 Score = 47.4 bits (111), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 39/229 (17%)

Query: 572 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 631
           G +P EH++D    A      +K G   +  ++  N+ + +  + K SL+ S   +  D 
Sbjct: 366 GIVPMEHISDSGLSAL---HKLKVGDNVEARVLDKNKINQVKFTLKQSLVKSKLPVLHDF 422

Query: 632 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
                    HG +  I + G  VRF G + G+ PR   ++    D++  + VGQ+V   +
Sbjct: 423 GEAKCGLKYHGTIGIINKNGMLVRFYGIIKGWVPRI-TLNSDTYDMNWNFSVGQTVTVCV 481

Query: 692 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 751
             V  +  R+TL +                   +EK ++  S               IG 
Sbjct: 482 ESVEKDQCRMTLRIVSE----------------KEKQSISLS---------------IGD 510

Query: 752 VIEGKVHESNDFGVVVSFEEHSD---VYGFITHHQLAGATVESGSVIQA 797
           +IEG V ES+  G+ +  ++  +   V GF+    +A   +E GS++ +
Sbjct: 511 IIEGTVSESSIKGIYLKIQKEDNENVVTGFLPSGHMA-PCIEVGSLLAS 558


>gi|405973238|gb|EKC37962.1| RRP5-like protein [Crassostrea gigas]
          Length = 1589

 Score =  239 bits (611), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 210/809 (25%), Positives = 367/809 (45%), Gaps = 100/809 (12%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--- 57
           Q ++ GM + G V EV+E  L I LP  L G   L + + A    L    + +E++L   
Sbjct: 114 QILAPGMLILGCVKEVHEYSLSISLPNNLTGTVALTQISPAYTEQLQRLSQMSEEDLMSE 173

Query: 58  ------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 111
                 LPT+F +G +V+C +L + + K+     K+ LSL    + K L+ E +  GM +
Sbjct: 174 DTEVADLPTLFKIGMIVTCKILSVQNSKQ--SGVKVKLSLNPQDINKDLTPEGLHNGMAV 231

Query: 112 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVV------- 159
              + S+ED GY++  G+     F+   +  +     N G  ++ G  +   +       
Sbjct: 232 FGSISSVEDRGYVVDLGIKGVKAFMKSLDAEKYVQLHNEGFPLRVGQPVTCALKVGEDRM 291

Query: 160 -RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG-VMLSFL 217
            R++  TR  + ++ DP  V+    KD   +  + L PGM V+TRV  + ENG V++ FL
Sbjct: 292 ERAVGETR-TINVTIDPSEVATAQIKDAMEVKFNCLAPGMKVATRVMKVCENGGVVVKFL 350

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 277
           + F G+V + HL    P        ++  ++ ARIL++ PT+++V LT  P+++     P
Sbjct: 351 S-FKGSVPVTHLSIKTP--------HKGNQMMARILYIQPTTKSVVLTTLPHIVDYSGAP 401

Query: 278 SHVKV-----GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 332
               +     GDI + ++V+  D   G  L I        A  ++  +++E+V  L+ ++
Sbjct: 402 VKTSLTQYDKGDIIEDARVLYTDHKRGAYLKIQD---GVTALASLKSLSDEKVTDLKAQF 458

Query: 333 KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 392
           K  S  R R+LG   ++ +    +K S F     +   + PG + + +V+ +   G IV+
Sbjct: 459 KRDSIHRCRVLGVDLMDNVVHVGMKKSLFSKSFVSLKSLHPGDLFECEVVELKDKGVIVK 518

Query: 393 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLA 450
             G +  + P  H+++  +  P K+F  G ++  RVL   +  K + +T K++LV ++L 
Sbjct: 519 -SGHISGIIPKMHLADIPLKMPEKRFIPGKKVKCRVLKNDLSKKSLVLTAKRSLVNTQLP 577

Query: 451 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 510
           +L+  ++    L T G++ K    G  V FY  V+GF P+ EL  +    P  +++ GQV
Sbjct: 578 LLTDLSQLEAGLQTEGYVIKTYSKGVLVGFYANVKGFVPKKELSTEEIAHPEKVFYTGQV 637

Query: 511 VKCRIMSSIPASRRINLSFM--------MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 562
           VKCR++S       + LSF          K   V ED   ++G  V   V       + V
Sbjct: 638 VKCRVLSWNLDKGTVTLSFKSDDWKQHGSKLANVPED--FQIGKSVDCKVTEKRKTGLDV 695

Query: 563 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 622
            +   G S   +P  HL+D L    +M            L V D  S  +L         
Sbjct: 696 VLKPSGVS-AFLPRIHLSDSLATCDLM------------LEVTDVGSDGML--------- 733

Query: 623 SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 682
               +P     IH               G FV     L G AP     D Q     + Y+
Sbjct: 734 ----IPGTVKSIHS------------RFGIFVELPSGLVGLAPNRFVSDRQWQKAKEQYH 777

Query: 683 VGQSVRSNILDVNSETGRITLSLKQSCC--SSTDASFMQEHFLLEEKIAMLQSSKHNGSE 740
           +GQ+V + IL  N +  +  +SL+   C   +T+   ++++ +  +KI   +S    G +
Sbjct: 778 IGQAVIARILQSNRDDNKCLVSLRMQECYQGNTEVDLVEDYLMALDKIEDQKSRFPPGIK 837

Query: 741 LKWV-EGFIIGSVIEGKVHESNDFGVVVS 768
           +  V +  ++G   +  +++  D G+ VS
Sbjct: 838 IGGVYKASLVGRSDDKMIYKLADSGISVS 866



 Score =  232 bits (592), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 188/593 (31%), Positives = 314/593 (52%), Gaps = 49/593 (8%)

Query: 1250 DLSPNMIVQGYVKNVTSK-GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            +L P  +V+G ++ +  + G  + L       V L++L D Y   P  +F  G+ +   V
Sbjct: 1010 NLDPGNVVEGRLQKLKKRSGILVNLVGGAKGVVCLTDLYDEYQNDPLSKFHQGQHLKCYV 1069

Query: 1309 LSVEPLSKRVEVTLKTS----DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
            + + P  +  +++L+ S    D       E+  + +L VG  + G I +  S  L + I 
Sbjct: 1070 IDLGP-KQTYQLSLRRSRVFNDKSDVKDPEVLGVKSLKVGQELRGYIVKKTSSDLLVRI- 1127

Query: 1365 NTNLVGLCHVSELSEDHVD--------------NIETIYRAGEKVKVKILKVDKEK--RR 1408
              ++ G    ++ S  H+D              + + I   G+KV +K L   +E+  R+
Sbjct: 1128 GRDVFGTIDGADFS--HIDRRTKRLLFNAKIVISTKVIGLDGDKVHLKFLSYKEEESGRK 1185

Query: 1409 ISLGMKSSYFKNDADNLQ-----MSSEEESDEAIEEVGSYNRSSLLE-NSSVAVQDMDME 1462
                  S    N  + L+      S +++  E  +E     R  + + N+S   Q  ++ 
Sbjct: 1186 AIKRQHSVESVNSEEELKPKPGVKSKDKQKTEETQESTQKRRKKVADKNNSDKKQSNELS 1245

Query: 1463 SEDGGSLVLAQIESRASVPPLEVNL------DDEQPDMDNGISQNQGHTDEAKTIDEKNN 1516
            +E           S   +P L+++       D   P  +N     +  +DE+ + + +  
Sbjct: 1246 NEPTS----GSQNSTDELPRLKIDYAFSWDADLTLPPTEN----MENSSDESDSEETQKK 1297

Query: 1517 RHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1575
                KK+  + E  +   E+R LE    P   ++F+R+V  SP+SS VWI+YMA  L  +
Sbjct: 1298 TKKSKKDMTKEEIMLFEFEKRQLEGSVRPEKTEDFDRMVLQSPDSSLVWIRYMAHHLESS 1357

Query: 1576 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
            ++EKA+++AERAL+TI+ REE E+LN+WVAY NLEN YG P +  + KV +RA+Q  +P 
Sbjct: 1358 EIEKAQAVAERALKTISFREEQERLNVWVAYLNLENMYGTPAQ--LQKVLERAVQQNEPL 1415

Query: 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRA 1694
             V+  L+ +Y ++ + + A++L  KM+KK   +  VWL       +  + E  + ++QR+
Sbjct: 1416 SVYQQLVNIYVKSGKLEEAEQLYNKMVKKHSANKSVWLGFGDFFFRNGRVESARKLLQRS 1475

Query: 1695 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1754
            L SL +  H+  IS+ A +EFK G A+RG++MFE IL  YP+RTDLWS+Y+D  ++ GD+
Sbjct: 1476 LNSLEKRDHVDTISKFAQMEFKYGEAERGKTMFENILVNYPRRTDLWSVYIDMVVKSGDL 1535

Query: 1755 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            +  R LFER I+L +  KKMKF FKK+L++E+  G+E  +  VKQKA EYV+S
Sbjct: 1536 EGARLLFERVINLQMAMKKMKFFFKKFLDFEEKHGDELSVAAVKQKAQEYVDS 1588



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 193/456 (42%), Gaps = 54/456 (11%)

Query: 373 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 432
           PGM V  +V+ V   G +V      K   P+ H+S   I  P K    G +++ R+L ++
Sbjct: 328 PGMKVATRVMKVCENGGVVVKFLSFKGSVPVTHLS---IKTPHK----GNQMMARILYIQ 380

Query: 433 --SKRITVTHKKTLVKSKLAILSSYAEATDR--LITHGWITKIE-KHGCFVRFYNGVQGF 487
             +K + +T    +V    A + +     D+  +I    +   + K G +++  +GV   
Sbjct: 381 PTTKSVVLTTLPHIVDYSGAPVKTSLTQYDKGDIIEDARVLYTDHKRGAYLKIQDGVTAL 440

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 547
           A    L  +   +  + +    + +CR++        +++   MK +  S+   V L SL
Sbjct: 441 ASLKSLSDEKVTDLKAQFKRDSIHRCRVLGVDLMDNVVHVG--MKKSLFSKS-FVSLKSL 497

Query: 548 VSGVVDVVTPNAVVV----YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
             G  D+     V +     ++  G+  G IP  HLAD +      K  I PG +  +  
Sbjct: 498 HPG--DLFECEVVELKDKGVIVKSGHISGIIPKMHLAD-IPLKMPEKRFI-PGKKV-KCR 552

Query: 604 VLDNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           VL N+ S  +L+L+AK SL+N+   L +D S +       GYV      G  V F   + 
Sbjct: 553 VLKNDLSKKSLVLTAKRSLVNTQLPLLTDLSQLEAGLQTEGYVIKTYSKGVLVGFYANVK 612

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 721
           GF P+ +    + A   K +Y GQ V+  +L  N + G +TLS K               
Sbjct: 613 GFVPKKELSTEEIAHPEKVFYTGQVVKCRVLSWNLDKGTVTLSFKSD------------- 659

Query: 722 FLLEEKIAMLQSSKHNGSELKWV-EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 780
                        K +GS+L  V E F IG  ++ KV E    G+ V  +  S V  F+ 
Sbjct: 660 -----------DWKQHGSKLANVPEDFQIGKSVDCKVTEKRKTGLDVVLKP-SGVSAFLP 707

Query: 781 HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 816
              L+ +      +++  + DV     L+  ++K++
Sbjct: 708 RIHLSDSLATCDLMLE--VTDVGSDGMLIPGTVKSI 741



 Score = 41.2 bits (95), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 16/88 (18%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            G++V GR+ K+    G LV  +G    G V  T+L           YDE Q DPLS + +
Sbjct: 1014 GNVVEGRLQKLKKRSGILVNLVG-GAKGVVCLTDL-----------YDEYQNDPLSKFHQ 1061

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSS 1222
            GQ +KC V+++    + T+  +LSLR S
Sbjct: 1062 GQHLKCYVIDLGP--KQTY--QLSLRRS 1085



 Score = 40.4 bits (93), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 31/233 (13%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            +H GD+    + ++     G++V+ G H+ G +    L +I +  P     E +F P   
Sbjct: 497  LHPGDLFECEVVELKDK--GVIVKSG-HISGIIPKMHLADIPLKMP-----EKRFIP--- 545

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
               G+ VKC+VL+   + +      L+ + SL              V+T    L  +  L
Sbjct: 546  ---GKKVKCRVLKNDLSKKSLV---LTAKRSL--------------VNTQLPLLTDLSQL 585

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
               +  +GYV    SKG  +     +   V    LS   +  PEK F  G++V  RVLS 
Sbjct: 586  EAGLQTEGYVIKTYSKGVLVGFYANVKGFVPKKELSTEEIAHPEKVFYTGQVVKCRVLSW 645

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
                  V ++ K+ D +       N   +  +G  V  ++      GL + ++
Sbjct: 646  NLDKGTVTLSFKSDDWKQHGSKLANVPEDFQIGKSVDCKVTEKRKTGLDVVLK 698


>gi|150865289|ref|XP_001384440.2| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Scheffersomyces stipitis CBS 6054]
 gi|149386545|gb|ABN66411.2| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Scheffersomyces stipitis CBS 6054]
          Length = 1699

 Score =  239 bits (611), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 114/270 (42%), Positives = 180/270 (66%), Gaps = 3/270 (1%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++ +KAR I ERAL+TIN R+E E
Sbjct: 1430 LNTRAPQSVADFERLLVGNPNSSILWMNYMSFQLQLSEADKAREIGERALKTINYRDEQE 1489

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLNIW+A  NLEN +G   +E++ ++F+R+ QY D   +H  L+ +Y  +E+   A+EL 
Sbjct: 1490 KLNIWIALLNLENTFGT--DESLEEIFKRSTQYMDSLTMHQKLVSIYSMSEKYYQAEELY 1547

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
              M KKF  S  VW++    LL ++ QE    V+ +AL +LP+  HI+ + + A LEF  
Sbjct: 1548 KVMTKKFGKSISVWVQYGSFLLDRKLQEETHEVLAKALQTLPKRDHIEVVRKFAQLEFSK 1607

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1777
            G A++GRS+FEG++++ PKR DLW++Y+DQEI+  +   +  +FERA++  L  K+ KF 
Sbjct: 1608 GDAEQGRSLFEGLVADAPKRIDLWNVYVDQEIKQDNKSKVEDIFERALAKKLSRKQAKFF 1667

Query: 1778 FKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            F K+L +E+  G+E+    +K +A+EY +S
Sbjct: 1668 FTKWLAFEEEKGDEQMAARIKARAVEYAQS 1697



 Score =  187 bits (476), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 178/684 (26%), Positives = 321/684 (46%), Gaps = 52/684 (7%)

Query: 58  LPTIFHVGQLVSCIVLQ--LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 115
           L T+F +GQ +   V+Q     ++ +  K++I L++    + + L  E +  G  L   V
Sbjct: 182 LKTLFSIGQWLRAKVVQPSSSQNQNQKQKKRIQLTIEPETVNQPLEDEDLIPGNALQCSV 241

Query: 116 KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDV---KPG--LLLQGVVRSIDRTRKVVY 170
           KS+EDHG I++ G    +GF+    +     +DV   KPG  LL   V +S  RT  +  
Sbjct: 242 KSVEDHGIIMNTGRDGLSGFISNKEIKNTPDLDVEILKPGKVLLTSIVSKSASRTVNLRP 301

Query: 171 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
           + S   +    VT      S+D ++PG++V   V  + +NG+++        T+++  LQ
Sbjct: 302 IHSTSVSKKSAVTSIS---SVDAVLPGILVDALVADVTKNGLIVKVFGLVDATINLAQLQ 358

Query: 231 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--PYLLHNRAPPSHVKVGDIYDQ 288
             F     K+ Y     + AR++ V   + +  L L+  P+ +   +  S+    + +  
Sbjct: 359 E-FDFNALKHKYAIGNNIKARVMAVLTRAGSKKLILSHLPHAISYTSTASNPDALEAFP- 416

Query: 289 SKVVRVDRGLGLLLDIPSTPVSTPAYV-------TISDVAEEEVRK---LEKKYKEGSCV 338
                    +G +L+      S P YV        +  V   ++ K   LE  +  GS  
Sbjct: 417 ---------IGHVLEDAEVVGSDPNYVFLKFGGSILGQVHNSKIDKDKTLEHDFNLGSKH 467

Query: 339 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPG 395
             R++GF  ++ L    +++          SDV  G  VK  ++I V  ++ G +++   
Sbjct: 468 SARVIGFNSIDNLLVLTMESHVINSQYLHASDVPNGTAVKSCEIIKVLPEAGGIVIKVLD 527

Query: 396 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSS 454
             +   P  HMS+ ++V P +KFKVG+++  RVL  +  ++ VT KK+LV      +L+ 
Sbjct: 528 EFEGFVPGSHMSDIKLVYPERKFKVGSKVRGRVLSKQGNKLVVTFKKSLVNIEDDEVLAR 587

Query: 455 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 514
           + +A     T   + K   +G  V F+  ++ F P++E+        S    +GQ V  R
Sbjct: 588 FEDAKIGFKTPAIVEKFVHNGAIVSFFGNLRAFLPKNEISETFVSNASDYLRLGQTVNVR 647

Query: 515 IMSSIPASRRINLSF-----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 569
           ++      +R+ ++      +    + S DDL    S+V+  V   T ++V+V +  +G 
Sbjct: 648 VLDVKQEEKRMLVTLRHSSELTNTQKSSIDDLQPGKSIVTVSVVEKTKDSVIVEL--EGN 705

Query: 570 S-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQ 625
           S +G I T HL D + E        +  G +  ++LVL  D ++  +++SAK SLI++A+
Sbjct: 706 SLRGVIYTGHLTDGNYEQNRAYAKKLSIGEKL-EVLVLEKDLKARTVIVSAKKSLIDAAK 764

Query: 626 Q--LPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 682
           Q  +P+    I   N ++ G+V ++   G FV F G+LTG      A   +  DL K +Y
Sbjct: 765 QDAIPAYFKDIKVDNKMLRGFVKSVTNKGLFVSFAGKLTGLVLAKYATSNENEDLLKKFY 824

Query: 683 VGQSVRSNILDVNSETGRITLSLK 706
             QS+   +++++ E  R  L+LK
Sbjct: 825 KYQSIACRVINIDEENKRFLLTLK 848



 Score =  166 bits (419), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 259/1120 (23%), Positives = 470/1120 (41%), Gaps = 154/1120 (13%)

Query: 352  ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 411
            +T + K SA   +    + V PG++V   V  V   G IV+  G V A   L  + EF+ 
Sbjct: 304  STSVSKKSAVTSISSVDA-VLPGILVDALVADVTKNGLIVKVFGLVDATINLAQLQEFDF 362

Query: 412  VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSY---AEATDRL----IT 464
                 K+ +G  +  RV+ V    +T    K L+ S L    SY   A   D L    I 
Sbjct: 363  NALKHKYAIGNNIKARVMAV----LTRAGSKKLILSHLPHAISYTSTASNPDALEAFPIG 418

Query: 465  H----GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SS 518
            H      +   + +  F++F   + G    S++  D   E    +++G     R++  +S
Sbjct: 419  HVLEDAEVVGSDPNYVFLKFGGSILGQVHNSKIDKDKTLEHD--FNLGSKHSARVIGFNS 476

Query: 519  IPASRRINL-SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
            I     + + S ++    +   D+    ++ S  +  V P A  + +      +G +P  
Sbjct: 477  IDNLLVLTMESHVINSQYLHASDVPNGTAVKSCEIIKVLPEAGGIVIKVLDEFEGFVPGS 536

Query: 578  HLADHLEHATVMKSVIKPGYEFD-----QLLVLDNESSNLLLSAKYSLINSAQ-----QL 627
            H++D          ++ P  +F      +  VL  + + L+++ K SL+N        + 
Sbjct: 537  HMSDI--------KLVYPERKFKVGSKVRGRVLSKQGNKLVVTFKKSLVNIEDDEVLARF 588

Query: 628  PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 687
                      ++V  +V N    G  V F G L  F P+++  +   ++ S    +GQ+V
Sbjct: 589  EDAKIGFKTPAIVEKFVHN----GAIVSFFGNLRAFLPKNEISETFVSNASDYLRLGQTV 644

Query: 688  RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
               +LDV  E  R+ ++L+ S                     +  + K +  +L+  +  
Sbjct: 645  NVRVLDVKQEEKRMLVTLRHSS-------------------ELTNTQKSSIDDLQPGKSI 685

Query: 748  IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 807
            +  SV+E K  +S    V+V  E +S + G I    L     E        +    K E 
Sbjct: 686  VTVSVVE-KTKDS----VIVELEGNS-LRGVIYTGHLTDGNYEQNRAYAKKLSIGEKLEV 739

Query: 808  LV---DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVL 863
            LV   DL  +TV +   +   S   A K+       KD+ V ++ +   V+ V    L +
Sbjct: 740  LVLEKDLKARTVIVSAKK---SLIDAAKQDAIPAYFKDIKVDNKMLRGFVKSVTNKGLFV 796

Query: 864  SLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE 923
            S       +  A  +  N  +   K+F   QS+   V+ +   +   R LL LK ++ ++
Sbjct: 797  SFAGKLTGLVLAKYATSNENEDLLKKFYKYQSIACRVINIDEENK--RFLLTLKDVNGSK 854

Query: 924  TSSSKRA--------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 975
               S+          K    +  G   +A I  +K  +L ++      GRI  TE  +  
Sbjct: 855  NIDSEAVVNPVDTSKKLIGDFVPGIATKAVIKSVKGTQLNVQLADNLQGRIAATECFNSW 914

Query: 976  SNVVENL--FSNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLTVS 1023
            + + +     S F  GQ +  +II   +  + K          K+ + ELS+    L  S
Sbjct: 915  NEIKDKKQPLSQFHKGQVIDVKIIGFHDAKNHKFLPITHTRSNKNIILELSLIKKDLESS 974

Query: 1024 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1083
                +L F    +  G +   +V  +   +   ++S +++ ++  ++     S   + + 
Sbjct: 975  TPYQELTF--SSIVPGSQHIVFVNNIAKGYVWASLSPNIRGRISFMELTDNVSVFDDLEN 1032

Query: 1084 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGG 1140
               IG A++  V  ++ E   + L  R                NM   I +   G     
Sbjct: 1033 NLPIGSAISATVKEVDNEHHSVVLTARK---------------NMVASIKDVKVGQKYPA 1077

Query: 1141 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL-SGYDEGQFVK 1199
            RI K+      ++V++G  +      T        D L  Y     D L S +   +F  
Sbjct: 1078 RILKVRDTY--VLVELGEKVVASAFIT--------DALDNYS----DKLESVFTTNEFAT 1123

Query: 1200 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1259
              VL+I      +  + +SLR           +D  TD     K +  I DL+   +V+G
Sbjct: 1124 ATVLDID---TDSEKIAVSLR-----------TDSPTD-----KVINSIADLNRGDVVKG 1164

Query: 1260 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1319
            +VKNV + G ++ L R + A V +++LSD Y++  +K F   + + G++ + +    RV 
Sbjct: 1165 FVKNVANNGVYVSLGRSVHALVRVADLSDAYLKDWKKYFKPHQPILGKISACKE-EGRVL 1223

Query: 1320 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELS 1378
            +TLK S+  +   + +    +L VG+I  G +KR   +G+FI ++ T N+ GLCH S+++
Sbjct: 1224 MTLKESEV-SGELNVLKRFDDLVVGEIFEGSVKRATDFGVFIKLDGTLNITGLCHHSQIA 1282

Query: 1379 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
            +  VDN+ +++  G++VKVK+L +D +K+++SLGMK+SYF
Sbjct: 1283 DKDVDNVTSLFGEGDRVKVKLLAIDSDKKQLSLGMKASYF 1322



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 6/162 (3%)

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G  I +  + +  V  S++SD  +  PE++F +G  V GRVLS +    ++ VT K S  
Sbjct: 520  GIVIKVLDEFEGFVPGSHMSDIKLVYPERKFKVGSKVRGRVLSKQ--GNKLVVTFKKSLV 577

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                   +    +  +G      +++    G  ++    NL      +E+SE  V N   
Sbjct: 578  NIEDDEVLARFEDAKIGFKTPAIVEKFVHNGAIVSFFG-NLRAFLPKNEISETFVSNASD 636

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1429
              R G+ V V++L V +E++R+ + ++ S   ++  N Q SS
Sbjct: 637  YLRLGQTVNVRVLDVKQEEKRMLVTLRHS---SELTNTQKSS 675


>gi|281210740|gb|EFA84906.1| HAT repeat-containing protein [Polysphondylium pallidum PN500]
          Length = 936

 Score =  239 bits (609), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/307 (40%), Positives = 192/307 (62%), Gaps = 30/307 (9%)

Query: 1528 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1586
            EQ+I+  E+ L + +  P +  +FER++  SPNSSF+W+KYM+F L + ++ KAR I ER
Sbjct: 629  EQDIKEKEDLLSDHNIQPESSQDFERVLLGSPNSSFIWVKYMSFYLGLNEIHKAREIGER 688

Query: 1587 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1646
            AL+ I   E  E  N+W+A FNLEN YG+  +++++K+FQ+A+QY DPK ++ +++ + E
Sbjct: 689  ALKKIIPTEVLELRNVWIALFNLENMYGS--KDSLLKLFQKAIQYQDPKTMYFSIVNILE 746

Query: 1647 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIK 1705
             T +    +E      KKF+HS KVW R  + L++  + +    +++RA  SLP+ K ++
Sbjct: 747  ATSKFDAEEEYFKMFFKKFRHSAKVWCRYGEFLIRANKVDLFHQILKRATESLPKRKQVE 806

Query: 1706 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD------------ 1753
             IS+   LEFK G A+RGR++FEG++S YP RTDLW++YLD EI+L +            
Sbjct: 807  VISKFGQLEFKLGEAERGRTIFEGMVSSYPTRTDLWNVYLDMEIKLFNEHIKQQQDSSNN 866

Query: 1754 --------------VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1799
                          +  IR LFER I+L    + +K  FK+YL++EK  G+++ IE+VKQ
Sbjct: 867  NSMTNQQLQQQQSIIKRIRQLFERTITLKTSDRNIKQFFKRYLQFEKDNGDQQSIEHVKQ 926

Query: 1800 KAMEYVE 1806
             A+ YVE
Sbjct: 927  SALAYVE 933


>gi|395334532|gb|EJF66908.1| U3 snoRNP-associated protein Rrp5 [Dichomitus squalens LYAD-421 SS1]
          Length = 1492

 Score =  239 bits (609), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/265 (43%), Positives = 179/265 (67%), Gaps = 3/265 (1%)

Query: 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1602
            AP +  +FERL+  SPNSS++W++Y+AF L +++++KAR IA+RAL+TIN REE EKLN+
Sbjct: 1221 APESNSDFERLLLGSPNSSYLWVRYIAFQLQISEIDKAREIAKRALKTINFREEQEKLNV 1280

Query: 1603 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1662
            W+A  NLEN YG   EE++   F+ A ++ D K +HL +  ++E++++ + A+E   K  
Sbjct: 1281 WIALLNLENVYGT--EESLEATFKDAARHNDSKTIHLRMAEIFEQSDKLEKAEEQYKKTC 1338

Query: 1663 KKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            KKF  S KVW    +  LK+   E  + ++ R+L SL + KH+K I + A LE+K G  +
Sbjct: 1339 KKFSQSSKVWSLFGEHYLKRGMLEEARKLLPRSLQSLEKRKHLKTICKFAQLEYKLGDPE 1398

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            RG+++FEGI+  +P+R D+WSIY+D E   GD++ +R LF R ++L +   K K  FKK+
Sbjct: 1399 RGKTIFEGIVDSHPRRWDMWSIYMDMEAGQGDINSLRNLFNRVLTLKMTSHKAKSFFKKW 1458

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVE 1806
            LE E+ +G+EE    VK KA+E+ +
Sbjct: 1459 LELERRLGDEEGAHAVKTKAIEWTQ 1483



 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 193/730 (26%), Positives = 328/730 (44%), Gaps = 75/730 (10%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPI----LDNE 49
           Q +  GMK+ G V  V    L++ LP  L            L    ++++ +     D+E
Sbjct: 129 QRVVVGMKILGQVVAVEPLALIVSLPNQLFAHVPITHISTQLTHTLESMEDVEMGNSDDE 188

Query: 50  IEANEDNLLPTIFHV---GQLVSCIV-------------LQLDDDKKEIGKRKIWLSLRL 93
            E +  + +P +F +   GQ V  +V             L    D+ +   R++ L+L  
Sbjct: 189 DEDSSPSGVPDLFEIFRPGQYVRAVVTAVHPPGTTDVSGLGRARDEVQKASRRVELNLVP 248

Query: 94  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS-GIDVK-- 150
             + +G+    ++ G  ++A VKSIEDHGYIL  G+   +GFL   +  + S G + K  
Sbjct: 249 EKVNEGVVKSDLRTGFTMSAAVKSIEDHGYILDLGMSDVSGFLSFKDAQKGSWGTEKKLH 308

Query: 151 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 210
            G LL   V  +    +   +S DP T+S     ++  +S   +VPG +V + V ++  +
Sbjct: 309 IGQLLDVAVVKMSGNGRTCNVSVDPKTISTASITEVSNVSS--IVPGALVQSLVTAVQSD 366

Query: 211 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDP-TSRAVGLTLNP 268
           G++L  L YF GT+D FHL    P  +    Y   +KV ARIL+ ++P T     L+L  
Sbjct: 367 GLVLQVLGYFDGTIDQFHLVPGQPEVH----YQVGQKVKARILYDINPSTPPRFALSLAD 422

Query: 269 YLLH--NRAPPSHVK---------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 317
           +++    ++P +            +G I +  KV RV+   GL++++ S       ++ I
Sbjct: 423 HVVRFTTKSPSADAATTDLRNAYPIGTILEAVKVARVESERGLVVNVGS---GIEGFIHI 479

Query: 318 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 374
           S  ++E V  L      +K G   R R+ G+  L+G+    L+AS         +DV+ G
Sbjct: 480 SQTSDEHVPTLSASSGAWKLGMVHRARVTGYYPLDGILQLSLRASVLGQKFLQVADVQVG 539

Query: 375 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 432
            V+KG V  +      V   G V  +    H ++  +  P K+FK G+ L  RVL V  +
Sbjct: 540 EVIKGTVKKLTDSALFVSISGNVDGVIWPNHYADIALKHPQKRFKPGSSLKCRVLVVDPE 599

Query: 433 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 492
            KR+ +T KKTLV+S L  ++ +++A   ++TH  + K+      V  YN ++   P  E
Sbjct: 600 RKRVALTAKKTLVESTLPTITQFSDAQVGVLTHAVVFKVSDKSLQVELYNNLKATVPARE 659

Query: 493 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP----TRVSEDDLVKLGSLV 548
                    SS + +G+ V+ RI +  P + RI  S         + +++   V +G +V
Sbjct: 660 ASETTVPSLSSAFPIGKPVQVRITAVDPETSRITASIRQASPNYKSAITDISGVDIGDIV 719

Query: 549 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLLVLD- 606
            GV+  V  +  VV  +        +   +LA+  E +   ++S +K G +   L+V   
Sbjct: 720 EGVISDVRKDKAVV-ALQPTQVTALLSLNNLANRREVSVAQLRSTLKTGDKLQDLVVTSR 778

Query: 607 NESSNLLLSA-----KYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           N     +L A     K  L+    QL  D   + P  +V G V      G  V+    ++
Sbjct: 779 NPEKGFVLVAMKPKEKEQLVQK-NQLSIDT--VQPGQLVGGRVLRHARHGALVKITKAIS 835

Query: 662 GFAPRSKAVD 671
           G    + A D
Sbjct: 836 GILHPTDACD 845


>gi|340727403|ref|XP_003402033.1| PREDICTED: protein RRP5 homolog [Bombus terrestris]
          Length = 414

 Score =  238 bits (607), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 118/288 (40%), Positives = 196/288 (68%), Gaps = 3/288 (1%)

Query: 1520 KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEK 1579
            +++++ ++E+EIR  EE L + + P + D+F+RLV SSP+SS VW++YMA+ L   ++EK
Sbjct: 124  RREQERQKEREIRQREEALAKNELPNSVDQFDRLVLSSPDSSIVWLQYMAYHLQATEIEK 183

Query: 1580 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1639
            AR++A RA++TIN REE E+LN+W A+ NLE+++G P  E++  +FQ A++  D  K++ 
Sbjct: 184  ARAVARRAVKTINFREEKERLNVWKAWLNLESKFGIP--ESLNDIFQEAVRSNDSLKIYS 241

Query: 1640 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSL 1698
             +L ++    +     + +  MI KFKH  ++W    + LL+   ++  + V+QRAL SL
Sbjct: 242  HMLTVHVEAGRQMELQKTIDTMIGKFKHIPEIWFNCGECLLRMGLKDKSRHVMQRALQSL 301

Query: 1699 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1758
            P  +H+  +++ AI+E K G  +R +++FE ILS YPKR D+WS Y+D  ++  D+D+ R
Sbjct: 302  PASEHVNLMARFAIMENKFGDKERAQTLFEQILSSYPKRVDIWSCYIDSLVKSNDIDIAR 361

Query: 1759 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
             + ERA+  +LPP+KMK LFKK++ +E+  G +E +  V+Q A+EYVE
Sbjct: 362  KVLERAVVQTLPPRKMKILFKKFINFEEQHGTQEDVTRVQQLAVEYVE 409


>gi|389751237|gb|EIM92310.1| nucleic acid-binding protein [Stereum hirsutum FP-91666 SS1]
          Length = 1486

 Score =  237 bits (604), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 118/269 (43%), Positives = 174/269 (64%), Gaps = 3/269 (1%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L+   P +  +FER +  SPNSSF+WI+YM+F L ++++EKAR IA+RAL TIN REE E
Sbjct: 1206 LQTKTPESNADFERNLLGSPNSSFLWIQYMSFQLQLSEIEKAREIAKRALATINFREERE 1265

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLN+W+A  NLEN YG   +E++   F+ A ++CD K VHL L  + E +E+ +  +E  
Sbjct: 1266 KLNVWIALLNLENIYGT--DESLEAAFKDAARHCDSKTVHLRLAAILEESEKLEKTEEHF 1323

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
             +  KKF  S KVW    +   K    E  + ++ R+L SL + KH+K IS+ A L++K 
Sbjct: 1324 KRTCKKFGQSSKVWTLFGEFYFKHDNTEEARKLLPRSLQSLEKRKHLKTISKFAQLDYKL 1383

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1777
            G  +RG+++FEGI+  +PKR DLW+IYLD E    D+  +R LF+R ++  +   K K  
Sbjct: 1384 GDPERGKTIFEGIVDSHPKRWDLWTIYLDMEAGQKDIQHLRNLFDRVLAQKMTSHKAKTF 1443

Query: 1778 FKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            FKK+LE E+ +G+EE    VKQKA+E+ +
Sbjct: 1444 FKKWLELERRLGDEEGATLVKQKAIEWTQ 1472



 Score =  207 bits (528), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 213/788 (27%), Positives = 356/788 (45%), Gaps = 115/788 (14%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG-------LARAADALDPILDNEIE----A 52
           + I+ GMK+ G V  V    L++ LP  L G        +    AL+ +  NE E    A
Sbjct: 116 KRIAVGMKILGQVVSVQPLALIVSLPNQLLGHIPITQISSELTTALETMDTNEDEGMSSA 175

Query: 53  NEDNL---------LPTIFHVGQLVSCIVLQLDDDKKEIG--------------KRKIWL 89
            ED+          L  IF  GQ V C+V  + +     G               R++ L
Sbjct: 176 GEDDDEKKTSAVPDLHEIFEPGQYVRCVVTAVHEAGSTEGMAGVGRGKSAVEKSSRRVEL 235

Query: 90  SLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDV 149
           SL    + +G+    ++ G  ++A VKS+EDHGYIL+ GL + +GFL    +A++     
Sbjct: 236 SLLPEQVNEGVVKSDLKPGFTMSAAVKSVEDHGYILNLGLTNISGFLSSKEVAKSI---- 291

Query: 150 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG---------ISIDLLVPGMMV 200
            PG     V R +D +  VV LSS+  T +  V+ D  G          S+  ++PG +V
Sbjct: 292 -PGKAKLHVGRILDVS--VVKLSSNGRTCT--VSADSAGRASASLTEVTSVTSILPGELV 346

Query: 201 STRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDP--T 258
              + ++L  G+    L +F G VD FHL    PTT +K      +KV AR+L+  P  +
Sbjct: 347 QCLITAVLPTGLNFQVLGFFDGIVDSFHLPPGDPTTLFKIG----QKVKARVLYEIPGHS 402

Query: 259 SRAVGLTLNPYLL---------HNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLDIPS 306
                L+L+P++L          + A P+      +G I +  +V+RV+   GL++++  
Sbjct: 403 PPRFSLSLSPHILALDVKHSETEDEAAPTIKEAYPIGTILEAVRVIRVETERGLVVEVRP 462

Query: 307 TPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
                  ++ IS V+++ V  L      +K  S  R R+ G+  L+GL    LK S  E 
Sbjct: 463 ---GIQGFIHISHVSDDHVPSLSPSSGAWKLNSTHRARVTGYHPLDGLLQLSLKTSILEQ 519

Query: 364 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
                SDV+ G VVKG V  +      V   G V  +    H ++  + +P K+FK GA 
Sbjct: 520 KFLQVSDVQVGEVVKGTVKILTDTALFVSISGAVDGVVFPNHYADILLKQPQKRFKPGAN 579

Query: 424 LVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 481
           +  RV  V  + +RI++T KKTLV+S+L I++ + EA   ++TH  I +I +    + F+
Sbjct: 580 IKCRVFTVDPERRRISLTAKKTLVESELPIITKFEEAKVGMLTHAVIFRISERRLQIEFF 639

Query: 482 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR----VS 537
           N ++G  P+ E   D     ++ + VG+ VK RI++  P    I  S           V+
Sbjct: 640 NNIKGSVPQKEAS-DSATPLATAFSVGKPVKVRIIAVNPEDGHITASIRQATAGSEPIVA 698

Query: 538 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPG 596
           +   V++G  V G V  +  +  ++ + + G  +  +  ++LA+  +     ++  +  G
Sbjct: 699 DISGVEIGHTVDGDVAEIHSDNALIILKSTGI-RALLSLKNLANARKVPVAQLRGALSVG 757

Query: 597 YEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASHIHP--------NSVVHGYVCNI 647
              D L+V+  N    +++ A     N  +  P+   H HP          VV G V   
Sbjct: 758 EHLDDLVVVSRNPEKGIVIVA-----NRPKTKPA-LEHSHPLTIDTVEIRQVVGGRVLRH 811

Query: 648 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ-------SVRSNILDVNSETGR 700
              G  ++    +TG             D+S  Y VG         V++++L ++ E  +
Sbjct: 812 HRNGTLLKLSSSVTGTL--------HPTDVSDNYDVGNIFPQIDSIVKASVLSIDKEKKQ 863

Query: 701 ITLSLKQS 708
           + LS +QS
Sbjct: 864 LVLSSRQS 871


>gi|321477952|gb|EFX88910.1| hypothetical protein DAPPUDRAFT_220970 [Daphnia pulex]
          Length = 1487

 Score =  236 bits (602), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 118/298 (39%), Positives = 191/298 (64%), Gaps = 4/298 (1%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAF 1570
            D +     K +E +  E ++   EE L   + AP T D+F+R+V +SPNSS +W++YMAF
Sbjct: 1185 DRRERAREKLEEAKVNEAKLSQIEEELNNPERAPVTTDDFDRMVLASPNSSILWVQYMAF 1244

Query: 1571 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1630
             L  A++EKAR++A+RAL+ ++ REE EK N+W+A+ NLE+ YG    E      Q A++
Sbjct: 1245 HLENAEIEKARTVAQRALKIMSFREEQEKFNVWIAWLNLEHMYGT--TEGYESTLQEAIR 1302

Query: 1631 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQA 1689
            Y +P K++  +   +E++ +   A+ L   M+KK+K +  VW+      ++  + +  + 
Sbjct: 1303 YNEPFKIYRQMALNFEQSGKFDDAESLYTTMLKKYKQNKSVWINACLFYVRNSKLDTARG 1362

Query: 1690 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1749
            V QRAL  L + +HI  IS+ A LE K G   RG+++F+ ++  YPKRTDLW +Y+D   
Sbjct: 1363 VFQRALSILDKKEHIDLISRFAQLEMKFGQVGRGKTLFDTLMMSYPKRTDLWLVYIDTLT 1422

Query: 1750 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            ++ D++  R + ER I+L LP KKMK +F+K+LE+E   G+EE+ +YV++KA++YVES
Sbjct: 1423 KVDDIESARQVLERCITLQLPAKKMKTIFQKFLEFETHHGDEEKQDYVRKKALDYVES 1480



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 189/846 (22%), Positives = 353/846 (41%), Gaps = 69/846 (8%)

Query: 6   ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP--------ILDNEIEANEDNL 57
           ++ GM++   V EV E D+++ LPG ++ +    +   P          D ++EA     
Sbjct: 92  LAEGMQVLSRVQEVRELDVLLSLPGRIQAVVPITNISAPYSKLIDMLAQDEDVEAKG--- 148

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
           L  I   G L  C + ++ +D    G  K+  SL    +   +    + +GM +TA V+S
Sbjct: 149 LKEILTAGDLFPCSIKEVTND----GSFKVTASLNPVDVNSDIPSTALCKGMKMTAAVQS 204

Query: 118 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 177
           +EDHGY++  G+ +   FL +        +D+  G ++   V        V  L+    T
Sbjct: 205 VEDHGYVMDVGILNVRSFLTKV-----PDLDLAVGQIVSVCVTGCQIDGHVATLTLS--T 257

Query: 178 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 237
           V     K    +++  L+P   +   V  +L  G+ ++F     G +   HL N   + +
Sbjct: 258 VESVKFKQNVELNLSTLIPATKLHVTVNKVLPQGLTVTF-GNMVGYIHKDHLVNINDSVS 316

Query: 238 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH---NRAPPSHVKVGDIYDQSKVVRV 294
               Y +     A +L+  P   AV L+L   L+    N      + +G  ++ +     
Sbjct: 317 A---YEKSANYTAIVLYTLPLVNAVYLSLKSSLVKPDLNVNEKDTIALGQFFEATITEST 373

Query: 295 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 354
             GL + L+  +       +++ +    E+ R L   +   S  R R+L    L+ +   
Sbjct: 374 SAGLFVQLNKKAKGFVPLRHLSDNQDIFEDTRAL---FPVKSRKRCRVLYHASLDDIYIC 430

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE-FEIVK 413
            +K S        + D   G +++GK+ +V   G  V     +K   P  H ++   + K
Sbjct: 431 TMKKSLITQKALRYEDFIVGEILEGKIDSVSPAGVSVHLGVNLKGFIPKLHWADDPRLKK 490

Query: 414 PGKKFKVGAELVFRVLGVKSKRITV--THKKTLVKSKLAILSSYAEATDRLITHGWITKI 471
           P  +F+VG  +  RVL V   R T+  T KK+++  K+   S  ++    L   G +  I
Sbjct: 491 PELRFRVGEPITCRVLKVMIDRKTIHLTCKKSMLDEKVVAYSCTSQLETNLALKGTVALI 550

Query: 472 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-- 529
           EK G  V F++G+ G+ P + L  +   +    +++G+V+ C++  SI  S ++ L+   
Sbjct: 551 EKGGVLVSFFDGLTGYIPGNRLLKNGITDIHHYFYMGKVIDCKV-ESINESGKVILTLAG 609

Query: 530 --MMKPTRVSEDDLVKLGSLVSG----VVDVVTPNAVVVYV-IAKGYSKGTIPTEHLADH 582
             + KP  + E  ++ LG++V      V D V  N+  + V I    + G IP EHL+D 
Sbjct: 610 SGLTKPKSLPEKPILNLGTIVECKVERVYDAVEGNSSGLEVSIPSLETTGIIPVEHLSDF 669

Query: 583 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN--SAQQLPSDASHIHPNSVV 640
            + A+ +    +PG    + +V  +     +L+ K +++N       P     +   S +
Sbjct: 670 PKAASHLLDCYRPGQVIKEAVVYMSSKLQTVLTLKPNIMNFIKGNGYPKSVDDVAMGSTL 729

Query: 641 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-------VGQSVRSNILD 693
                     G F + L       P    V      +S   Y       +  ++   ++ 
Sbjct: 730 PCVATLHRPFGVFAQLLC-----PPNKFDVLFPPGKMSPNLYSYMENGTMHMTLEGEVIR 784

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM-LQSSKHNGSELKWVEGFIIGSV 752
           +  E  +I LS   +C     A  ++ +  +EEKI + L+ S   G  LK +    +G V
Sbjct: 785 IEKEEKKIFLSALNACVPENAARVLEAYLKVEEKIKVHLRESSDEG--LKNLASLKLGDV 842

Query: 753 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
           + GK+    D    + FE    + G +  +  A    +   +I  +++        VD  
Sbjct: 843 VVGKLLTEFDSSADLEFELPHGINGIVPAYHHAKKDFKKNDLIVGSVM-------YVDPI 895

Query: 813 LKTVFI 818
           +K V++
Sbjct: 896 MKKVYV 901



 Score = 44.3 bits (103), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 116/291 (39%), Gaps = 40/291 (13%)

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
            GL V  G ++ G +H   L NI              D +S Y++       VL     V 
Sbjct: 291  GLTVTFG-NMVGYIHKDHLVNIN-------------DSVSAYEKSANYTAIVLYTLPLVN 336

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
              +   LSL+SSL                 P  ++ + + ++     +  +   TS G F
Sbjct: 337  AVY---LSLKSSLV---------------KPDLNVNEKDTIALGQFFEATITESTSAGLF 378

Query: 1271 IMLSRKLDAKVLLSNLSDG--YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
            + L++K    V L +LSD     E     FP+      RVL    L      T+K S   
Sbjct: 379  VQLNKKAKGFVPLRHLSDNQDIFEDTRALFPVKSRKRCRVLYHASLDDIYICTMKKS--- 435

Query: 1329 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIET 1387
              +Q  +    +  VG+I+ G+I  V   G+ + +   NL G       ++D  +   E 
Sbjct: 436  LITQKALR-YEDFIVGEILEGKIDSVSPAGVSVHL-GVNLKGFIPKLHWADDPRLKKPEL 493

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1438
             +R GE +  ++LKV  +++ I L  K S           +S+ E++ A++
Sbjct: 494  RFRVGEPITCRVLKVMIDRKTIHLTCKKSMLDEKVVAYSCTSQLETNLALK 544


>gi|322799748|gb|EFZ20953.1| hypothetical protein SINV_01223 [Solenopsis invicta]
          Length = 321

 Score =  235 bits (599), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/291 (42%), Positives = 190/291 (65%), Gaps = 4/291 (1%)

Query: 1519 AKKKEKE-EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADV 1577
            A+++E+E ++E+EIR  EE L     P + D+F+RLV SSP+SS VW++YMA+ L   ++
Sbjct: 31   AERREQERQKEREIRQREEALASNQTPNSIDQFDRLVLSSPDSSLVWLRYMAYHLQATEI 90

Query: 1578 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1637
            +KAR++A RA++TIN REENE+LNIW A+ NLE+ YG    E++  VFQ A++  D  KV
Sbjct: 91   DKARAVARRAIKTINFREENERLNIWNAWLNLESRYGTA--ESLNDVFQEAVRTNDAYKV 148

Query: 1638 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALL 1696
            ++ +L +     +    ++L+  +I KFK   + W+     LLK   +E  + ++QRAL 
Sbjct: 149  YMHMLTVQADAGRKNELEKLISTVIGKFKQDPQTWIDCGTALLKIGMKEKSRQIMQRALQ 208

Query: 1697 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1756
            SLP  +HI  + + A LE K G  +R +++FE ILS YPKR D+WS Y+D  I+  ++DL
Sbjct: 209  SLPASQHINLLVRFANLENKLGDQERAQTLFENILSSYPKRVDVWSCYVDCLIKSKNIDL 268

Query: 1757 IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             R + ERA   +LPP+K+K LF K++ +E+  G  E +  V+Q A +YVE+
Sbjct: 269  ARKVLERACVQTLPPRKIKTLFTKFINFEEKYGTSEAVARVRQMAADYVEN 319


>gi|346324040|gb|EGX93638.1| Nucleic acid-binding, OB-fold-like protein [Cordyceps militaris CM01]
          Length = 1774

 Score =  233 bits (594), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 317/1314 (24%), Positives = 554/1314 (42%), Gaps = 163/1314 (12%)

Query: 9    GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN--------------- 53
            G  + G +  +N   L + LP  L G      A+   L N +++                
Sbjct: 129  GSIVLGQITRINNLALEVALPNNLTGHVSIV-AISEQLTNRLQSGAKDEDVDEKEDESDG 187

Query: 54   --EDNLLPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 110
              ED  L +IF VGQ +   VL  +D       KRKI LSLR +    GL+ +       
Sbjct: 188  EGEDVDLKSIFEVGQFLRAYVLSTVDGAVSGKSKRKIELSLRPTEANTGLTKDDAVPHCT 247

Query: 111  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-------VKPGLLLQGVVRSID 163
            + A V S+EDHG I+  G+   +GFLP      N+ ID       ++ G +    V +  
Sbjct: 248  VAAAVASVEDHGCIMDLGIDGLSGFLP------NAEIDATFKRERLQEGAVFLSQVTANQ 301

Query: 164  RTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGT 223
             + KV  L+   D + K      +  +I+  +PG  V+  +     +GV    + +   T
Sbjct: 302  GSGKVAQLTLKQDKIGKVSNHPAEATTINTFLPGTAVNVLITGNSSSGVTGKIMGHVDAT 361

Query: 224  VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL---------- 271
             D+ H       T+ ++ Y    KV ARI+   PTS+   +G+TL P+L+          
Sbjct: 362  ADLIHSGIGPFGTDVESKYKIGSKVKARIICNFPTSKDPKLGITLLPHLMALTKKRPEGP 421

Query: 272  -HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
              +  P   + +  I +Q  V  V+  +GL +D+    +    +V IS V + +V  L +
Sbjct: 422  KRSSLPLQVIPIASIVEQCTVRHVEADMGLFVDVGVPGLC--GFVHISRVKDGKVDALYE 479

Query: 331  K---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV----VKGKVIA 383
                YK GS  + R++G+  ++G+     + +  E       DV  G V    ++  +I 
Sbjct: 480  SSGPYKAGSTHKGRVVGYSEIDGVFQLSFQKTVLEQKYIRQEDVPVGAVLTCDIEKLIIN 539

Query: 384  VDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTH 440
             D   G  +Q   G+    P  H+S+ ++  P KKF+ G ++  RVL   +  KRI +T 
Sbjct: 540  EDGVNGLTLQIAEGITGFVPERHLSDVKLQHPEKKFRQGMKIKARVLSNDLIKKRIRLTL 599

Query: 441  KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
            KKTLV S+  I+ SY +        G I K+E  G  ++FY+ ++GF P SE+      +
Sbjct: 600  KKTLVNSETPIIRSYDDVKVGSQALGTIIKLESSGARIQFYDELRGFLPISEMSEAYIRD 659

Query: 501  PSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDV 554
            PS  + VGQVV   ++   P  RR+ +S      F ++     ++  + LG +VS  V  
Sbjct: 660  PSEHFRVGQVVSVHVLDVDPERRRLVVSCKDPGAFGLEKQNALKN--ISLGDIVSAKVTQ 717

Query: 555  VTPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESS-- 610
             + + V V  +     K  +P  HL D    ++   +K V   G     L+V+D   S  
Sbjct: 718  KSEDQVFVE-LEGSLLKAILPVSHLTDKSASKNQFALKRV-SAGQTLSNLVVIDKNDSRR 775

Query: 611  NLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
            ++ L+ K SL+++A +  L        P  +  G+V NI  T  FV+F G L    P+++
Sbjct: 776  SITLTQKPSLVHAAAEGRLLKSFEQARPGKLFAGFVKNITATAVFVQFAGSLNALLPKAR 835

Query: 669  AVDGQRAD----LSKTYYVGQSVRSNILDVN-------SETGRITLSLKQSCCSSTDASF 717
                 +A     L K   +   + S I D+N       S      ++ K     +  A  
Sbjct: 836  LAPEAQAKPDFGLHKNDSIEVRIVSTIPDLNRIMVAPASAPADQDIAGKSESAKAAPADG 895

Query: 718  MQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG 777
            +    + + K+  ++ ++ N          I+ S ++G++  +N FG   S+++  D   
Sbjct: 896  LAFGSITQAKVTSIKETQLNVQ--------IVDSGVQGRIDVANVFG---SWDDIPD--- 941

Query: 778  FITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 835
                H L  AT   G V++  ++ V  AK  R + +S ++       E  + +       
Sbjct: 942  --PKHPL--ATFHKGQVLRVKVVGVHDAKDHRFLPISHRSAH--SILELTTRQTDLDDTT 995

Query: 836  KREAS-KDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQFLN 892
              E + + L V QT  A V  + + YL ++L P     I     SD  +Q    +  F  
Sbjct: 996  PNELTFESLKVGQTHVAFVNNLTQQYLWVNLSPSVRGRISAMEASDDLSQLNDLEGNFPP 1055

Query: 893  GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPL 952
            G ++   V+++ + +      L L A     ++SS       S     ++  +IT++   
Sbjct: 1056 GSALKVRVVSINAENNH----LDLSA----RSASSNDIVSWDSIKANMILPGKITKVNER 1107

Query: 953  ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI--IAKSNKPDMKKSFL 1010
            ++ +K      G +H+ ++ D+   V     + ++ G+ V   +  + KSNK        
Sbjct: 1108 QILVKLSESVSGPVHLPDMADNFDGVNT---TQYRKGEIVRVAVVDVDKSNK-------R 1157

Query: 1011 WELSIKPS--MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1068
              LS +PS  M +   +  K + +   +S G  V G+V  V ++   + +   + A + I
Sbjct: 1158 LRLSTRPSRIMSSTLPVKDKEISDIAQLSSGDIVRGFVKNVADKGLFVLLGGQVSALVKI 1217

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
              S      L+E++  F + + V G ++ I+   K + + L+          VD      
Sbjct: 1218 --SNLSDRYLKEWKDEFQVDQMVKGRIIFIDNAAKQIEMSLK-------SSVVDEDYTPP 1268

Query: 1129 QTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             T+  I  G IV G++ K+      +++    ++ G  H +++    V            
Sbjct: 1269 MTYRDISVGQIVTGKVRKVADFGAFILIDNSANVSGLCHRSQMAENRVQ----------- 1317

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1240
            D    Y EG  VK KVLE          V++  R    G+  T   D  TD+D+
Sbjct: 1318 DATKLYKEGDVVKAKVLE----------VDVEKRKISFGLKPTLFEDEDTDMDS 1361



 Score =  189 bits (479), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/286 (37%), Positives = 171/286 (59%), Gaps = 11/286 (3%)

Query: 1530 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            EI   +   L+ + P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR +AERA +
Sbjct: 1473 EIEVDKTAELDSNGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREVAERATR 1532

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
            TIN+REE EKLN+WVAY NLE  YG   +  + +VF+RA QY DP++VH  L  +Y ++E
Sbjct: 1533 TINMREETEKLNVWVAYLNLEVAYGT--KATIEEVFRRACQYNDPQEVHERLASIYIQSE 1590

Query: 1650 QNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKF 1706
            + K A+ L   M+KKF   +  VW      L   K +    +A++ RA   L        
Sbjct: 1591 KLKEAEALFEAMVKKFGAKTPNVWTNYAHFLHVTKGEPARARALLPRASQQLGSAHAATI 1650

Query: 1707 ISQTAILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIRGLFE 1762
            +++ A LEF  ++G  +RGR+MF G+L  +PK+ DLW+  LD E+ +  GDV  +R +FE
Sbjct: 1651 VARFAALEFHSEHGEPERGRTMFTGLLDTWPKKGDLWNQLLDLEMGVEGGDVTAVRDVFE 1710

Query: 1763 RAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            R   +  L P++ +  F+++  +E+ V  + + + V  +A E+  +
Sbjct: 1711 RRTRVRGLKPQQAEKWFRRWTAFEEGVDPKGK-DRVTARAREWAAA 1755



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 8/150 (5%)

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G  + ++  +   V   +LSD  ++ PEK+F  G  +  RVLS + + KR+ +TLK    
Sbjct: 545  GLTLQIAEGITGFVPERHLSDVKLQHPEKKFRQGMKIKARVLSNDLIKKRIRLTLK---- 600

Query: 1328 RTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1384
            +T   SE   I +  ++ VG   +G I ++ES G  I   +  L G   +SE+SE ++ +
Sbjct: 601  KTLVNSETPIIRSYDDVKVGSQALGTIIKLESSGARIQFYD-ELRGFLPISEMSEAYIRD 659

Query: 1385 IETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
                +R G+ V V +L VD E+RR+ +  K
Sbjct: 660  PSEHFRVGQVVSVHVLDVDPERRRLVVSCK 689


>gi|345490135|ref|XP_001599465.2| PREDICTED: protein RRP5 homolog [Nasonia vitripennis]
          Length = 1396

 Score =  233 bits (594), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 112/264 (42%), Positives = 180/264 (68%), Gaps = 3/264 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P+T D+F+RLV SSP+SS VW++YMA+ L   ++EKAR++A RAL+TIN REE+E+LN+W
Sbjct: 1128 PQTVDQFDRLVLSSPDSSLVWMQYMAYHLQATEIEKARAVARRALKTINFREEDERLNVW 1187

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
             A+ NLE+ +G    E++ +VFQ A++  D +KV+  +L ++    +    ++L   MI 
Sbjct: 1188 QAWLNLESRFGTA--ESLNEVFQEAVKTNDAQKVYTHMLTVHGDAGRQADLEKLTSAMIA 1245

Query: 1664 KFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
            KFK + + W+     LLK   ++  + ++QRAL SLP  KH+  + + A LE + G  +R
Sbjct: 1246 KFKQNPETWISCGTALLKIGMKDKSRHIMQRALQSLPATKHVDLLVRFAQLENRLGDKER 1305

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
             +++FE +L+ YPKRTD+WS Y+D  ++ GD+++ R + +RAI+  LPPKKMK LFKKY+
Sbjct: 1306 AQTLFEQVLTSYPKRTDVWSSYVDSLVKSGDIEIARKVLDRAITQGLPPKKMKVLFKKYI 1365

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVE 1806
            ++E   G  E +  +++ A++YVE
Sbjct: 1366 DFESKHGTPENVSRIQELAVKYVE 1389



 Score =  149 bits (377), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 202/837 (24%), Positives = 354/837 (42%), Gaps = 92/837 (10%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLARAAD-------ALDPILDNEIEANEDNLLPTI 61
           GM + G +  V +    + LPG +    +A D       +L  I  NE  + E   +  +
Sbjct: 67  GMVIVGRIFRVTDYHAFVSLPGQISAKLQATDISDSYTNSLKSIAKNEEISEEFKPMSDL 126

Query: 62  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 121
           +  G  V C V   + + K     K+ +SL   L+ + L+  T+ +   +   + S+EDH
Sbjct: 127 YKEGDYVVCYVKSFNPNTK-----KVSVSLEPQLINQSLNPGTLVKRSKVVLSISSVEDH 181

Query: 122 GYILHFGLPSFTGFLPRNNLA-ENSGIDVKPGLLLQGVVRSIDR-----TRKVVYLSSDP 175
           GY+L  GL +F  FL   ++A E + + V  G  +   V+ +       T KV   +   
Sbjct: 182 GYVLETGLKNFRAFLSIKDIADEETKLFV--GKQIICAVKDVKTAENIYTAKVSIKTKHL 239

Query: 176 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
           DTV   +T      S+D L+P    +  V+ +L+NG+ + F     G ++  +LQN+   
Sbjct: 240 DTVETNIT------SLDSLIPTAQFALTVKKVLKNGLQVEFGENSIGYINQLYLQNSL-- 291

Query: 236 TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 295
               + + + +++   +L++ PT +    +L P      A    + +GD+  ++K V  D
Sbjct: 292 ----DSFKKGQELVGTLLYIVPTVKFGYFSLLP----QEAEQKLLAIGDVITKAKFVSKD 343

Query: 296 -RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 354
            RG+ L L           YV +    E +  K++  + + S  + +IL +  +  +   
Sbjct: 344 SRGIILQLK-----KGIQGYVPLKR-TEVQFEKIDSVFTKNSIHKCKILAYDSIARVYIC 397

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
            ++    E  V   + ++PG VV+ K+  +   G I    G      P   +S+     P
Sbjct: 398 SMEKKVIEKTVVNKTILQPGHVVEVKITKIKKNGYISVSSGTRNGFVPADQVSD-----P 452

Query: 415 GKK--FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
           G K  FKVG  +  RVL    K I  T KK+L++SKL IL    +A    +  G +++I 
Sbjct: 453 GYKATFKVGQNVTARVLETSVKNI-FTLKKSLIESKLPILCKMEDAKADAVHDGTVSRIT 511

Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 532
             G  +RF++GV+GF P+  L  +      +M  VGQ V   I        ++ LS +  
Sbjct: 512 DAGILIRFFDGVKGFIPKKFLNNNTASAKWNMV-VGQTVSTVIKDVDVRETKLILSLVKG 570

Query: 533 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL-ADHLEHATVMKS 591
               +++   K+G +V G+V   +   V + +  K Y +   PT +L A H+        
Sbjct: 571 AK--AQNTKFKIGDVVEGIVTDSSAEGVQLRL--KNYGEEA-PTAYLPAGHMS------- 618

Query: 592 VIKPGYEFDQLL----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH---PNSVVHGYV 644
              P YE  +LL    V     + ++ S   +LI S    P     IH   P   V   V
Sbjct: 619 ---PCYEVGKLLASKTVAGESVTAIVFSTMPTLILSTTFAPEKTYKIHDLKPEDTVMCSV 675

Query: 645 CNIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703
             I +    V   L + + F      V    A   ++ Y  Q +   +  +  ++  I+L
Sbjct: 676 KKIHKESVKVLMPLVKSSKFG----TVPAASAGNIESMYENQILIGKVTRIEKDSQEISL 731

Query: 704 SLKQS----CCSSTDASFMQEHFLLE---EKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 756
           + + S      S  D   M    +L     K+  L  + +  S  K +    IG  I+G 
Sbjct: 732 TTQLSKVWKSVSEHDVKMMTAVDVLSSYLNKVTELSRNVYYTS--KPISKLSIGQRIKGS 789

Query: 757 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 813
           V    D G+++  E  ++V G +      G  V  G  ++ ++L +      V+L+L
Sbjct: 790 VESVMDHGLILKLE--NNVKGIVRTSHFTGNVV-PGQKVEGSVLWINYPHEYVELTL 843


>gi|361124585|gb|EHK96666.1| putative rRNA biogenesis protein rrp5 [Glarea lozoyensis 74030]
          Length = 1525

 Score =  232 bits (591), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/281 (41%), Positives = 183/281 (65%), Gaps = 7/281 (2%)

Query: 1530 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            EI+      L+ + P++  +FERL+   P+SS +WI+YMAF + ++++ KAR +AERA++
Sbjct: 1239 EIKIDRTGDLDANGPQSVADFERLLLGQPDSSQLWIQYMAFQMQLSELSKAREVAERAIK 1298

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
            +INIREE EK+N+W+A  NLE+ YG+  +E+V +VF+RA QY DP+++H  L  ++ ++ 
Sbjct: 1299 SINIREETEKMNVWIALINLESAYGS--DESVDEVFKRACQYNDPQEIHERLASIHIQSG 1356

Query: 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFI 1707
            +   AD+L   +IKKF  S  VW      L+      +  +A++ RA  SLP H H+   
Sbjct: 1357 KLDKADDLFQIIIKKFSQSPNVWYNYAHFLMTSLSSPDRARALLPRATQSLPPHTHLALT 1416

Query: 1708 SQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765
             + A LEF +  G A+RGR+MFEG+LS +PKR D+W+  LD EI+ GD D+IRG+FER  
Sbjct: 1417 LKFAALEFHSEAGSAERGRTMFEGLLSTFPKRLDIWNQLLDLEIQQGDKDIIRGVFERVT 1476

Query: 1766 -SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
             +  + PK  K  F+++ E+E+  G+ +  E VK KA E+V
Sbjct: 1477 RTKGIKPKGAKAWFRRWSEWEEGNGDAKSQERVKAKAEEWV 1517



 Score =  193 bits (490), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 175/638 (27%), Positives = 305/638 (47%), Gaps = 56/638 (8%)

Query: 113 AYVKSIEDHGYILHFGLPSFT--GFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVV 169
           A V S+EDHG ++  GL   T  GF+    + + + +  V+ G +   +V  +    K+V
Sbjct: 2   AAVSSVEDHGLVMDLGLEDTTVKGFMSSKEIGKGTELSKVQEGAVYLSMVTGLSSNGKIV 61

Query: 170 YLSSDPDTVSKCVTKDLKGIS----IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
            LS+D   ++   TK L  +S    ID  +PG  V   V  +   GV+   +     T+D
Sbjct: 62  KLSADTQKIAN--TKKLSYLSEAPTIDAFMPGTAVEILVTDVTARGVIGKVMGMVDVTID 119

Query: 226 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS-----------RAVGLTLNPYLLHN- 273
           + H     P  + +  Y    K+  R++   PT+             +G++L   +++  
Sbjct: 120 LIHSGAALPGKDLEKKYKLGSKIKGRVICNFPTADPPKLGVSLLDHVIGMSLQQAVVNGE 179

Query: 274 -RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK-- 330
            + P   + +  I ++  V +V+ G GL +D+    +S   +V IS V + ++  L +  
Sbjct: 180 KKQPLDVLPLSAILEEVVVRKVEAGHGLFVDVGVKGLS--GFVHISRVKDGKIETLSEVS 237

Query: 331 -KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDS- 386
             YK GS  R R++G+  ++G     L+AS  E       D+K G  VKG +  I V++ 
Sbjct: 238 GAYKLGSTHRGRVIGYNSIDGTFLLSLEASILEQPFLNIEDLKIGETVKGTIEKIVVNAK 297

Query: 387 --FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK-SKR-ITVTHKK 442
              G +V    G+  L P  HM++ +++ P KKFK G  +  RVL    SKR + +T KK
Sbjct: 298 GVGGVLVNLAEGISGLVPEAHMADVKLLHPEKKFKEGMAVTCRVLSTDPSKRQVRLTLKK 357

Query: 443 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
           +LV S+ A   SY +    + + G I  + + G  V+FY  ++GF P +E+      +P+
Sbjct: 358 SLVNSEAAPFVSYEDIEVGMQSPGTIINVLQAGAVVQFYGSIRGFLPVAEMSEAYIQDPT 417

Query: 503 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR---VSEDDL--VKLGSLVSGVVDVVTP 557
             + +GQVV   +    P ++++ +S    PT      +  L  +K+G +VS +V   + 
Sbjct: 418 QHFRIGQVVNVHVTKVDPETQKMTVS-CKDPTTFGLAQQTALKNLKVGEIVSALVTEKSS 476

Query: 558 NAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDN-ESSNL-L 613
           + + + +  +   + T+   HL D    ++A+  K  I+ G +   L VL+  ES  L L
Sbjct: 477 DDISLEIEGQSL-RATLSLSHLTDGSSSKNASAFKK-IRVGQKLTDLAVLEKLESKRLVL 534

Query: 614 LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
           L+ K SLI +++   L      +  + +VHG+V NI  T  F++F G LTG  P+SK   
Sbjct: 535 LTNKPSLIKASKDRTLLRSIEDVKVDKIVHGFVKNITPTAAFIQFGGGLTGLLPKSKL-- 592

Query: 672 GQRADLSKTYYVG----QSVRSNILDVNSETGRITLSL 705
               D++     G    Q+ +  ++ V+ E G   LS+
Sbjct: 593 --PKDMASLDDFGLKKFQAAQVKVISVDREQGTFVLSM 628



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 187/840 (22%), Positives = 327/840 (38%), Gaps = 135/840 (16%)

Query: 62   FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG----LSLETVQEGMVLTAYVKS 117
            F  G  V+C VL  D       KR++ L+L+ SL+       +S E ++ GM     + +
Sbjct: 331  FKEGMAVTCRVLSTDP-----SKRQVRLTLKKSLVNSEAAPFVSYEDIEVGMQSPGTIIN 385

Query: 118  IEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGLLLQGVVRSID-RTRKVVYLS 172
            +   G ++ F   S  GFLP   ++E    D     + G ++   V  +D  T+K+    
Sbjct: 386  VLQAGAVVQF-YGSIRGFLPVAEMSEAYIQDPTQHFRIGQVVNVHVTKVDPETQKMTVSC 444

Query: 173  SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL-TYFTGTVDIFHLQN 231
             DP T        LK + +     G +VS  V     + + L         T+ + HL +
Sbjct: 445  KDPTTFGLAQQTALKNLKV-----GEIVSALVTEKSSDDISLEIEGQSLRATLSLSHLTD 499

Query: 232  TFPTTN---WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQ 288
               + N   +K      K  +  +L    + R V LT  P L+  +A      +  I D 
Sbjct: 500  GSSSKNASAFKKIRVGQKLTDLAVLEKLESKRLVLLTNKPSLI--KASKDRTLLRSIED- 556

Query: 289  SKVVRVDRGL-GLLLDIPSTPVSTPAYVTI----------SDVAEEEVRKLEKKYKEGSC 337
               V+VD+ + G + +I  TP  T A++            S + ++     +   K+   
Sbjct: 557  ---VKVDKIVHGFVKNI--TP--TAAFIQFGGGLTGLLPKSKLPKDMASLDDFGLKKFQA 609

Query: 338  VRVRILGFRHLEGLATGIL---------KAS--AFEGLVFTHSDVKP------------- 373
             +V+++     +G  T +L         KAS     G   T   V P             
Sbjct: 610  AQVKVISVDREQG--TFVLSMTDMSEDSKASQQPVAGEALTGDVVNPVDESITSMQNFDI 667

Query: 374  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVGAELVFRV 428
            G + K +V++V      VQ    V+    +  +   +E +K    P KKF     L  RV
Sbjct: 668  GRLTKARVVSVKDTQINVQLADNVQGRIDVSQVFDSWEEIKDRKKPLKKFSAKQILDVRV 727

Query: 429  LGVKSKR----ITVTHK--KTLVKSKLAILSSYAEATDRLIT-------HGWIT---KIE 472
            LG+   R    + ++H+  K++V    A  S   E T   +T         WI     I 
Sbjct: 728  LGMHDARNHRFLPISHRVGKSVVFELSAKPSDQVETTQEPLTLDKVKKGSAWIAFINNIT 787

Query: 473  KHGCFVRFYNGVQGFAPRSELGLDPG--CEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 530
             +  +V     V+G     E+  D     +  S + VG  ++ R+ +   ++ R++LS  
Sbjct: 788  DNCAWVNLSPNVRGRISLMEMSDDVSRLKDVESNFPVGSAIRARVTNVDASNNRLDLSAR 847

Query: 531  MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 590
             +P        +  G ++ G V   T   ++V  +A G + G +    LAD    A   K
Sbjct: 848  SQPAEKLTLQTLSEGMVLPGKVTRSTERQILVE-LADGLA-GPVHLPDLADDFSQADPTK 905

Query: 591  SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYV 644
               K       ++ +D  +    LS + S +  +  LP      +  S +  N VV G+V
Sbjct: 906  -YTKNDIVRVCVVSVDLPNKRFRLSTRPSRVLDS-SLPVEDPEFTSISQLKANDVVRGFV 963

Query: 645  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
             ++ + G FV   G LT F   S   D    D    + V Q V+  I  V++   +I +S
Sbjct: 964  KSVAKMGLFVNIGGNLTAFVRVSDLSDSYIKDWQSEFEVDQLVKGKITQVDANLNQIQMS 1023

Query: 705  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 764
            LK        +S + ++++     A L                 +G ++ GK+ +  DFG
Sbjct: 1024 LK--------SSVLDKNYVAPITFADLS----------------VGQIVTGKIRKVEDFG 1059

Query: 765  VVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLKTVF 817
            V +  +   +V G     ++A   V       E G  ++A ++ +   ++ + L LK  +
Sbjct: 1060 VFIVLDNSMNVSGLCHQSEMADKRVHDVKKLYEEGDAVKAKVIKIDSEKKRISLGLKAKY 1119


>gi|198413904|ref|XP_002123749.1| PREDICTED: similar to Protein RRP5 homolog (Programmed cell death
            protein 11) [Ciona intestinalis]
          Length = 1581

 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 160/575 (27%), Positives = 293/575 (50%), Gaps = 41/575 (7%)

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E + D++   +  G ++ + + G  + +  +   K+  +++SD +++   K F +G+++ 
Sbjct: 1027 EDVCDIAVGHVTNGEIREIVADGALVRMELRGKGKIFSTDISDEFLDGMLKNFRVGQIIR 1086

Query: 1306 GRVLSVEP----LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
             RV+        L+ R  +  +  D     + +I +++++    I  G IK     G+F+
Sbjct: 1087 CRVIGRSNEGFVLTMRKSLMHEICDLEPVDR-DICDITDVKPKQIFRGIIKVCSESGIFV 1145

Query: 1362 TIENT--NLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM----- 1413
            T+       V   + S+    DH + I+  Y  G  V   ++ V  +  R+ L M     
Sbjct: 1146 TLSRCVHGRVTFANASKFYISDHTEAIKIFY-PGRIVHCCVISVSPQDGRVELSMLERDT 1204

Query: 1414 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQ 1473
                  ND +   +  + + +E   +        L      +V+++  +SE         
Sbjct: 1205 GHCDIINDENRFPLRLKRKREETKTQQKKKKTRILKSAPKSSVENLIKQSEFK------- 1257

Query: 1474 IESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRA 1533
             E    V     + D  +P             D+  TID      + K++    + EI  
Sbjct: 1258 -EDNIKVATTVGDCDVIEPGF---------VWDDDVTID------SNKEDIMTTDNEI-C 1300

Query: 1534 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
            ++ ++ + + P +  E+E+L+    N S +WI++MAF L   ++EKAR++AE++L  I+ 
Sbjct: 1301 SKRKVNDDNPPESAVEWEKLLLLHHNESMLWIRFMAFHLRSREIEKARNVAEKSLTLIDR 1360

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1653
              ENE+LNIW A  NLEN YG   +  + +  +RAL+  D  KV+  ++ +YE + + + 
Sbjct: 1361 SAENERLNIWSALLNLENNYG--CDVTMKQTMERALKCSDQLKVYFRVVKIYEESGKKEK 1418

Query: 1654 ADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAI 1712
            A E+L KM  KF+ + +VWL  ++  +++   +  Q  ++R LLSLP+ ++++ IS+ A 
Sbjct: 1419 AGEMLEKMTNKFRQNKEVWLAHIRHQMEESHYKEAQESLKRCLLSLPKKQNLEIISKFAQ 1478

Query: 1713 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1772
            +EF  G A+RGR+MFE IL  Y KRTD+WSIY+D  ++ G  D  R +F R  SLSL  K
Sbjct: 1479 MEFTLGEAERGRTMFENILENYRKRTDIWSIYVDALVKAGMYDAARDVFNRVTSLSLSSK 1538

Query: 1773 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            KMK  +++++E+E   G ++  + VK+KA++Y ES
Sbjct: 1539 KMKTFYRRFVEFETKHGNDDDAKIVKEKALKYAES 1573



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 177/367 (48%), Gaps = 32/367 (8%)

Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 416
           K S  +     + D+ PG +V+ K+  V   G  V                   ++  GK
Sbjct: 8   KRSVLDAKYLRYEDIIPGTLVQCKITQVQQKGLQV-------------------VLGSGK 48

Query: 417 K-FKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 473
           K F  G  +  RVL   +KR  + +THK++LV SKL I+++Y       + HG+I+ I+ 
Sbjct: 49  KIFNEGNVIRCRVLTSSAKRRHLHLTHKQSLVGSKLPIVTNYDVIKRDDVIHGFISNIKP 108

Query: 474 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMK 532
            GCFV+FY+ V GF P  +L   P   P  ++ +GQVVKCR++S+   ++++ LSF  M 
Sbjct: 109 FGCFVKFYDDVTGFVPHHQLSATPVQNPQKLFFIGQVVKCRVISNDAGNKKLKLSFRTMN 168

Query: 533 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE-----HLADHLEHAT 587
             RV E + VK G +V+  V +   + + V ++     +   PT       L+D +E + 
Sbjct: 169 EKRVVEHN-VKPGMMVNVKVIMKEQSHLSVKIMGDESEQSDWPTAMISQYQLSDFVEISR 227

Query: 588 VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 647
            + ++++     +  +V+  +   + +S K+SL+     L  D   +    ++  +V  I
Sbjct: 228 SIFTLVREETVLNDCIVVATK-QQIQVSRKHSLVERG--LKVDFCDLIIGQLLRCFVRQI 284

Query: 648 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
              G FV  +G L G  P+S   D   AD++  +  GQSV + +  +  +  R  +SL+ 
Sbjct: 285 TSYGVFVETVGGLVGLCPKSAICDKYLADVNDRFITGQSVVAVVTGIEDDRKRFLVSLRL 344

Query: 708 SCCSSTD 714
           S C   D
Sbjct: 345 SQCPLID 351



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 169/404 (41%), Gaps = 65/404 (16%)

Query: 938  VGSLVQAEITEIKPLELRLKFGI-----GFH--GRIHITEVNDD-KSNVVENLFSNFKIG 989
            VGS V+ E+  I+     +K        G H  GRIH +EV ++ K NV  +  +N K+G
Sbjct: 852  VGSKVRGEVASIRATTAIVKLTSLPIVHGHHQVGRIHASEVFEECKQNV--SPMNNLKVG 909

Query: 990  QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1049
             T++  +I   +   M   FL E++ + +   V E+           S+ + V     K+
Sbjct: 910  DTISCTVIGVRDV--MTHRFL-EITNRKATRGVIEL-----------SLWRSVPPPGDKI 955

Query: 1050 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS--INKEKKLLRL 1107
            D E+           ++      + P  L     +   GK   G  +   + K    +  
Sbjct: 956  DAEFPFDRSRESYLVEVRPGVRGFIPKLLAMDGGKMGQGKMKQGRCVECIVVKHGDPIMF 1015

Query: 1108 VLR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1166
              R    +G+ +   DI+          G +  G I +I++   G +V++     G++  
Sbjct: 1016 ACRGALTNGVGEDVCDIA---------VGHVTNGEIREIVAD--GALVRMELRGKGKIFS 1064

Query: 1167 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1226
            T++ +    + L G        L  +  GQ ++C+V  I R+  G     L++R SL  M
Sbjct: 1065 TDISD----EFLDGM-------LKNFRVGQIIRCRV--IGRSNEGFV---LTMRKSL--M 1106

Query: 1227 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1286
                      D++   + +  I D+ P  I +G +K  +  G F+ LSR +  +V  +N 
Sbjct: 1107 HEI------CDLEPVDRDICDITDVKPKQIFRGIIKVCSESGIFVTLSRCVHGRVTFANA 1160

Query: 1287 SDGYVESPEKEFPI---GKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            S  Y+    +   I   G++V   V+SV P   RVE+++   D+
Sbjct: 1161 SKFYISDHTEAIKIFYPGRIVHCCVISVSPQDGRVELSMLERDT 1204



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 17/137 (12%)

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            ++EG  ++C+VL  S   R   H+ L+ + SL G    +   + T+ D           +
Sbjct: 51   FNEGNVIRCRVLTSSAKRR---HLHLTHKQSLVG----SKLPIVTNYDV----------I 93

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
              + ++ G++ N+   GCF+     +   V    LS   V++P+K F IG++V  RV+S 
Sbjct: 94   KRDDVIHGFISNIKPFGCFVKFYDDVTGFVPHHQLSATPVQNPQKLFFIGQVVKCRVISN 153

Query: 1312 EPLSKRVEVTLKTSDSR 1328
            +  +K+++++ +T + +
Sbjct: 154  DAGNKKLKLSFRTMNEK 170



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 167/395 (42%), Gaps = 61/395 (15%)

Query: 349  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP---- 404
            + L  G ++ S+ +   F   D+  G  V+G+V ++ +  AIV+       L  LP    
Sbjct: 828  KNLLLGKIQESSSDVGDFPFLDISVGSKVRGEVASIRATTAIVK-------LTSLPIVHG 880

Query: 405  -------HMSE-FEIVK----PGKKFKVGAELVFRVLGVKS----KRITVTHKK-TLVKS 447
                   H SE FE  K    P    KVG  +   V+GV+     + + +T++K T    
Sbjct: 881  HHQVGRIHASEVFEECKQNVSPMNNLKVGDTISCTVIGVRDVMTHRFLEITNRKATRGVI 940

Query: 448  KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 507
            +L++  S     D++       +  +    V    GV+GF P+  L +D G         
Sbjct: 941  ELSLWRSVPPPGDKIDAEFPFDR-SRESYLVEVRPGVRGFIPKL-LAMDGGKMGQGKMKQ 998

Query: 508  GQVVKCRIM---SSIPASRRINLSFMMKPTRVSEDDL-VKLGSLVSGVVDVVTPNAVVVY 563
            G+ V+C ++     I  + R  L+       V ED   + +G + +G +  +  +  +V 
Sbjct: 999  GRCVECIVVKHGDPIMFACRGALT-----NGVGEDVCDIAVGHVTNGEIREIVADGALVR 1053

Query: 564  VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL---VLDNESSNLLLSAKYSL 620
            +  +G  KG I +  ++D       +  ++K  +   Q++   V+   +   +L+ + SL
Sbjct: 1054 MELRG--KGKIFSTDISDEF-----LDGMLK-NFRVGQIIRCRVIGRSNEGFVLTMRKSL 1105

Query: 621  INSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFL----GRLTGFAPRSKAV 670
            ++    L        D + + P  +  G +    E+G FV       GR+T FA  SK  
Sbjct: 1106 MHEICDLEPVDRDICDITDVKPKQIFRGIIKVCSESGIFVTLSRCVHGRVT-FANASKFY 1164

Query: 671  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
                 +  K +Y G+ V   ++ V+ + GR+ LS+
Sbjct: 1165 ISDHTEAIKIFYPGRIVHCCVISVSPQDGRVELSM 1199



 Score = 43.9 bits (102), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 938  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
            VG +   EI EI      ++  +   G+I  T+++D+    ++ +  NF++GQ +  R+I
Sbjct: 1034 VGHVTNGEIREIVADGALVRMELRGKGKIFSTDISDE---FLDGMLKNFRVGQIIRCRVI 1090

Query: 998  AKSNKP---DMKKSFLWELS-IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEW 1053
             +SN+     M+KS + E+  ++P    + +I         DV   Q   G +       
Sbjct: 1091 GRSNEGFVLTMRKSLMHEICDLEPVDRDICDI--------TDVKPKQIFRGIIKVCSESG 1142

Query: 1054 ALLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
              +T+SR +  ++ F   S +  S+  E  + F+ G+ V   V+S++ +   + L +   
Sbjct: 1143 IFVTLSRCVHGRVTFANASKFYISDHTEAIKIFYPGRIVHCCVISVSPQDGRVELSMLER 1202

Query: 1113 QDGISDKTVDISND 1126
              G      DI ND
Sbjct: 1203 DTG----HCDIIND 1212


>gi|50554347|ref|XP_504582.1| YALI0E30217p [Yarrowia lipolytica]
 gi|49650451|emb|CAG80186.1| YALI0E30217p [Yarrowia lipolytica CLIB122]
          Length = 1567

 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 112/270 (41%), Positives = 178/270 (65%), Gaps = 5/270 (1%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L    P++  ++ERL+  +PNSS +WI YM+F++ ++++EKAR IA+RAL+TI+ R+E+E
Sbjct: 1284 LSTATPQSVGDYERLLVGNPNSSVLWISYMSFVMQLSELEKAREIAQRALKTISYRDEDE 1343

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLN+W+A  NLEN +G P  E+  K F+ A QY D + +++ +  +Y  +++   ADE+ 
Sbjct: 1344 KLNVWLALLNLENTFGTP--ESTDKTFKDAAQYMDAETIYMKMADIYAASDKKDKADEVY 1401

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
             K +KKF  S + W++    L   +Q    + ++ RA  +LP+  H++   + A LE+K+
Sbjct: 1402 AKAVKKFSGSMEAWIKYATFLFDNEQAAKGRVLLDRATKALPKRDHLQCAIKFAQLEYKS 1461

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAISL-SLPPKKMK 1775
            G A+RGR++ EG++S YPKRTDLWS ++D EI+ G D   I  LFER ++L  L  K+ K
Sbjct: 1462 GDAERGRTLLEGLVSVYPKRTDLWSQFVDFEIKYGQDKTKIEALFERVVALPKLSLKQAK 1521

Query: 1776 FLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            F FKK+ +YE    +++  EYVK KA +YV
Sbjct: 1522 FFFKKWYQYEVESDDDKAAEYVKAKAADYV 1551



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 171/733 (23%), Positives = 302/733 (41%), Gaps = 77/733 (10%)

Query: 5   NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHV 64
           NIS G  + G +  +     V+ LP  L G       +   L+ +IE  E+  L      
Sbjct: 90  NISVGSIILGRIVNIQSTACVVSLPNNLHGFVSCVQ-VSEALNAKIEEGEEFDLSDYVKE 148

Query: 65  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
           GQ V   V+  D   K +G     LSL    + + +    +   M L   VKS ED GY+
Sbjct: 149 GQWVRASVV--DTSNKRLG-----LSLLPKDVNRDIEDSDIDANMALQVEVKSKEDKGYV 201

Query: 125 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 184
           +  G+    GF+   ++  N G      ++L  V+R   RT     ++ D +   + V +
Sbjct: 202 VATGIKGKKGFIKDTDVELNKG-----QIVLACVLRISGRT-----ITLDTEHTGEAV-R 250

Query: 185 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 244
            L+  S    V G  V+        NG ++S       T+D F  Q +F          +
Sbjct: 251 QLEDFS--SAVAGTPVTVVTTDKRNNGAVVSVFGSVDATIDPF--QGSF-------GLEE 299

Query: 245 HKKVNARILFV---DPTSRAVGLTLNPYLLH-NRAPPSHVKVGDIYDQSKV--VRVDRGL 298
                AR++       + + + L+  P++++   A P   ++G+ +   +V  V+V   +
Sbjct: 300 KTSSVARVVATLDRGASGKRMLLSALPHVVNLEDADP---RIGEAFLPGQVLGVKVTHVV 356

Query: 299 --GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 356
             GL +++     + P ++ IS +A+E+       Y+ G  +  RI+ F   + +     
Sbjct: 357 QHGLFVELAE---NIPGFIHISKLADEKTDST-ADYEVGQTLDARIIAFAPQDEMYVLSC 412

Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIA-VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 415
           + S  +      SD+  G  V+G V   +   G IV     + A+ P  H+ + ++  P 
Sbjct: 413 EQSVMDAKYIATSDLSAGDKVEGTVTRHLPKGGIIVALSSFITAVVPAAHLVDAKMANPE 472

Query: 416 KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA-EATDRLITHGWITKIEKH 474
            KFK+G+++  R+LGV S    +T KK+L         SYA E  D  I  G +  ++  
Sbjct: 473 LKFKIGSKIKGRLLGVDSSGCRMTIKKSLYNLPKDDFISYASEIGD--IGSGTVVNVKPG 530

Query: 475 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
           GC V F++  Q + P  E+      + +    VGQ VK RI+   P  + + +S   K +
Sbjct: 531 GCVVEFWDNSQAWLPAGEVSEAFIADITKHCRVGQTVKIRILDINPEKQSMQVS--CKLS 588

Query: 535 RVSEDDL------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 588
           +V+ + +      + LG LV+G +     + V+   +      G +P   L    +   V
Sbjct: 589 KVAAEHVSGAYEGISLGDLVTGKIIDKRGDFVIEMTVGDVDLTGVVPRNLLPPSHKKLRV 648

Query: 589 MKSVIKPGYEFDQLLVLDNES--SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 646
              +        + +VL  +   S++ L A   +I                  V G+V N
Sbjct: 649 GDKL--------ECVVLAKQPWMSSMTLGAHPDIIKGYHNKTLIKETPSVGQTVTGWVQN 700

Query: 647 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL--S 704
           + + G FV F G + G AP++   D        +Y   Q V+  +  VN +   +++  S
Sbjct: 701 VNQHGVFVSFAG-VVGLAPQASLSD-------DSYDKFQVVKGRVTSVNGDKFAVSIGKS 752

Query: 705 LKQSCCSSTDASF 717
           L     +  D S 
Sbjct: 753 LNGPAVNPVDPSI 765



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 113/265 (42%), Gaps = 20/265 (7%)

Query: 468 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
           +T + +HG FV     + GF   S+L  D   + ++ Y VGQ +  RI++  P      L
Sbjct: 352 VTHVVQHGLFVELAENIPGFIHISKLA-DEKTDSTADYEVGQTLDARIIAFAPQDEMYVL 410

Query: 528 SF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 584
           S    +M    ++  DL   G  V G V    P   ++  ++  +    +P  HL D   
Sbjct: 411 SCEQSVMDAKYIATSDL-SAGDKVEGTVTRHLPKGGIIVALSS-FITAVVPAAHLVDAKM 468

Query: 585 HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSV 639
               +K   K G +    L L  +SS   ++ K SL N    LP D     AS I    +
Sbjct: 469 ANPELK--FKIGSKIKGRL-LGVDSSGCRMTIKKSLYN----LPKDDFISYASEI--GDI 519

Query: 640 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
             G V N+   GC V F      + P  +  +   AD++K   VGQ+V+  ILD+N E  
Sbjct: 520 GSGTVVNVKPGGCVVEFWDNSQAWLPAGEVSEAFIADITKHCRVGQTVKIRILDINPEKQ 579

Query: 700 RITLSLKQSCCSSTDASFMQEHFLL 724
            + +S K S  ++   S   E   L
Sbjct: 580 SMQVSCKLSKVAAEHVSGAYEGISL 604



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 38/282 (13%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            G ++G +++ ++    GL V++  ++ G +H ++L            DE + D  + Y+ 
Sbjct: 345  GQVLGVKVTHVVQH--GLFVELAENIPGFIHISKLA-----------DE-KTDSTADYEV 390

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ +  ++  I+   +   +V LS   S+       +SDLS          +K+E     
Sbjct: 391  GQTLDARI--IAFAPQDEMYV-LSCEQSVMDAKYIATSDLSAG--------DKVEGTVTR 439

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             + +G        G  + LS  + A V  ++L D  + +PE +F IG  + GR+L V+  
Sbjct: 440  HLPKG--------GIIVALSSFITAVVPAAHLVDAKMANPELKFKIGSKIKGRLLGVD-- 489

Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
            S    +T+K S         I+  S   +GDI  G +  V+  G  +   + +   L   
Sbjct: 490  SSGCRMTIKKSLYNLPKDDFISYAS--EIGDIGSGTVVNVKPGGCVVEFWDNSQAWL-PA 546

Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             E+SE  + +I    R G+ VK++IL ++ EK+ + +  K S
Sbjct: 547  GEVSEAFIADITKHCRVGQTVKIRILDINPEKQSMQVSCKLS 588



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 114/545 (20%), Positives = 225/545 (41%), Gaps = 121/545 (22%)

Query: 633  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGF--------APRSKAVDGQRADLSKTYYVG 684
            +I   S++ G + NI  T C V     L GF        A  +K  +G+  DLS     G
Sbjct: 90   NISVGSIILGRIVNIQSTACVVSLPNNLHGFVSCVQVSEALNAKIEEGEEFDLSDYVKEG 149

Query: 685  QSVRSNILDVNSETGRITLSL-KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 743
            Q VR++++D +++  R+ LSL  +      + S +  +  L+ ++     SK +      
Sbjct: 150  QWVRASVVDTSNK--RLGLSLLPKDVNRDIEDSDIDANMALQVEV----KSKED------ 197

Query: 744  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 803
             +G+++ + I+GK                    GFI    +    +  G ++ A +L + 
Sbjct: 198  -KGYVVATGIKGK-------------------KGFIKDTDV---ELNKGQIVLACVLRI- 233

Query: 804  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 863
                    S +T+ +D      + RQ +       +S   G   TV  +    + N  V+
Sbjct: 234  --------SGRTITLDTEHTGEAVRQLEDF-----SSAVAGTPVTV--VTTDKRNNGAVV 278

Query: 864  SLPEYNHSIGYASVSDYNTQKFPQKQFLNGQ-SVIATVMALPSSSTAGRLLLLLKAISET 922
            S+        + SV D     F     L  + S +A V+A      +G+ +LL  A+   
Sbjct: 279  SV--------FGSV-DATIDPFQGSFGLEEKTSSVARVVATLDRGASGKRMLL-SALPHV 328

Query: 923  ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 982
                    +   ++  G ++  ++T +    L ++      G IHI+++ D+K++     
Sbjct: 329  VNLEDADPRIGEAFLPGQVLGVKVTHVVQHGLFVELAENIPGFIHISKLADEKTDST--- 385

Query: 983  FSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1042
             +++++GQT+ ARIIA + + +M     + LS + S++    I +       D+S G +V
Sbjct: 386  -ADYEVGQTLDARIIAFAPQDEM-----YVLSCEQSVMDAKYIAT------SDLSAGDKV 433

Query: 1043 TGYVYKVDNEWALLTISRHL-KAQLFILDSAY----------EPSELQEFQRRFHIGKAV 1091
             G            T++RHL K  + +  S++            +++   + +F IG  +
Sbjct: 434  EG------------TVTRHLPKGGIIVALSSFITAVVPAAHLVDAKMANPELKFKIGSKI 481

Query: 1092 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE-GDIVGGRISKILSGVG 1150
             G +L ++      R+ ++           ++  D+  ++  E GDI  G +  +    G
Sbjct: 482  KGRLLGVDSSG--CRMTIKK-------SLYNLPKDDFISYASEIGDIGSGTVVNVKP--G 530

Query: 1151 GLVVQ 1155
            G VV+
Sbjct: 531  GCVVE 535



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 6/182 (3%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            E   P  ++   V +V   G F+ L+  +   + +S L+D   +S   ++ +G+ +  R+
Sbjct: 340  EAFLPGQVLGVKVTHVVQHGLFVELAENIPGFIHISKLADEKTDS-TADYEVGQTLDARI 398

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
            ++  P  +   ++ + S       ++    S+L  GD V G + R    G  I   ++ +
Sbjct: 399  IAFAPQDEMYVLSCEQS----VMDAKYIATSDLSAGDKVEGTVTRHLPKGGIIVALSSFI 454

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1428
              +   + L +  + N E  ++ G K+K ++L VD    R+++  KS Y     D +  +
Sbjct: 455  TAVVPAAHLVDAKMANPELKFKIGSKIKGRLLGVDSSGCRMTI-KKSLYNLPKDDFISYA 513

Query: 1429 SE 1430
            SE
Sbjct: 514  SE 515


>gi|238882053|gb|EEQ45691.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1726

 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/280 (41%), Positives = 178/280 (63%), Gaps = 13/280 (4%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1447 LNTRAPQSTADFERLLIGNPNSSILWMNYMSFQLQLSEVDKAREIGERALKTINYREEQE 1506

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLNIW+A  NLEN +G   +E++   F++++QY D   +H  L+ +Y+ +E+   A +L 
Sbjct: 1507 KLNIWIALLNLENTFG--TDESLEDTFKKSIQYMDSFTMHEKLVNIYKMSEKFDQAKQLF 1564

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
             +M KKF      W+     LL Q  Q+ +  ++ +AL  LP+ +HI+ + + A LEF+ 
Sbjct: 1565 NRMTKKFGKVLNTWVLYGSFLLDQNSQDEMHEILAKALNILPKREHIELVKKFAQLEFQK 1624

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDL---IRGLFERAISL 1767
            G  ++GRS+FEG++++ PKR DLW++Y+DQEI+         D D+   +  LFER +S 
Sbjct: 1625 GDPEQGRSLFEGLVADAPKRIDLWNVYIDQEIKQDNKTSDEDDTDIKSKVEDLFERVLSK 1684

Query: 1768 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             +  K+ KF F K+L YE+   +E  I  VK KA EYV++
Sbjct: 1685 KITRKQAKFFFNKWLNYEEDKQDENMIARVKSKAAEYVQN 1724



 Score =  194 bits (494), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 185/680 (27%), Positives = 318/680 (46%), Gaps = 40/680 (5%)

Query: 61  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 120
           IF +G  +   +    +D K   K++I L++    + + L ++ +    +L   VKSIED
Sbjct: 184 IFKLGSWLKAKITTSHEDYK--NKKRIELTIEPESVNENLEVDDLIVNNILQCSVKSIED 241

Query: 121 HGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSDPDT 177
           HG IL  G   ++GF+    L  N+ IDV    PGL++   + S    R  + L     T
Sbjct: 242 HGIILDTGKQEYSGFISNKELT-NAQIDVNTIVPGLVILCSIASKPSGR-TINLKPTTAT 299

Query: 178 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 237
           VS   T      SID + PG++V   +  + ENG++        GT+ +  +QN F    
Sbjct: 300 VSAKKTTVSTISSIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQN-FELKE 358

Query: 238 WKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIYDQS 289
            K+ Y     V AR+L V     ++ + L++ P++L      S  +      +G ++DQ 
Sbjct: 359 LKHKYAIGSTVKARVLAVLLKNGTKKLILSILPHVLQLGDDSSQTEALEAFPIGHVFDQV 418

Query: 290 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 349
           KV+  D+       +  +  S+  +  I     ++ + L   Y  GS  + R++GF  ++
Sbjct: 419 KVIGNDKHY-----VYVSFGSSSLFGQIHQSKFDDNKSL-LDYSIGSTHKSRVIGFNEVD 472

Query: 350 GLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPHM 406
            L     ++   +       DV  G ++   +++ V  D  G  V+F    K   P   M
Sbjct: 473 NLLILTFESKVIDAEYLNVRDVPIGKLLPNVEILKVLEDGIGINVKFFDEFKGFVPGNQM 532

Query: 407 SEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITH 465
           S+ ++V P +KF+VG +   R+L    KR  VT +K LV      ILS   +A     T+
Sbjct: 533 SDIKLVYPERKFRVGTKTKGRLLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGFKTN 592

Query: 466 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 525
             + K   +GC V F+  ++ F P++E+      + SS   +GQ+VK RI+      +R+
Sbjct: 593 AIVEKFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDINKEQKRL 652

Query: 526 NLSFMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHL 579
            ++ + + + +S     ++  LVSG  +V  V    T ++V+V  +   + +G I    L
Sbjct: 653 VVT-LKQSSELSNAQKNEISKLVSGKSIVKTVVVEKTKDSVLVE-LEGSHLRGVIYDGQL 710

Query: 580 AD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINS--AQQLPSDASHI 634
           +D + E    +   +  G E  ++L+LD +  +  ++ +AK SLI++  ++  P + S I
Sbjct: 711 SDGNYEQNRALAKRLAIG-ETLEVLILDKDLKARTVIATAKKSLIDASKSKSFPVEFSDI 769

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
             N VV GYV ++   G FV F GRLTG             DLSK ++  QS+   +L V
Sbjct: 770 AVNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCRVLSV 829

Query: 695 NSETGRITLSLKQSCCSSTD 714
           + E  R  L+L  S   + D
Sbjct: 830 DKENERFLLTLNNSSSFTKD 849



 Score = 47.0 bits (110), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 5/169 (2%)

Query: 369  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
            SD+  G V+KG V  + + G  V     + AL  +  +S+  +      FK    ++ ++
Sbjct: 1147 SDLTRGQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKI 1206

Query: 429  LGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQ 485
            +  K + RI +T K++ V  +L I+ ++ +     I  G +T     G FV+      V 
Sbjct: 1207 VNCKQEGRILMTLKESEVNGELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGTVNVS 1266

Query: 486  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
            G    SE+  +      S++  G  VK +I+  I + +R  LS  MK +
Sbjct: 1267 GLCHHSEISENDVDNVKSLFGTGDRVKVKIL-KIDSEKR-QLSLGMKAS 1313


>gi|68466849|ref|XP_722620.1| hypothetical protein CaO19.1578 [Candida albicans SC5314]
 gi|68467128|ref|XP_722479.1| hypothetical protein CaO19.9151 [Candida albicans SC5314]
 gi|46444457|gb|EAL03732.1| hypothetical protein CaO19.9151 [Candida albicans SC5314]
 gi|46444607|gb|EAL03881.1| hypothetical protein CaO19.1578 [Candida albicans SC5314]
          Length = 1722

 Score =  231 bits (590), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/280 (41%), Positives = 178/280 (63%), Gaps = 13/280 (4%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1443 LNTRAPQSTADFERLLIGNPNSSILWMNYMSFQLQLSEVDKAREIGERALKTINYREEQE 1502

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLNIW+A  NLEN +G   +E++   F++++QY D   +H  L+ +Y+ +E+   A +L 
Sbjct: 1503 KLNIWIALLNLENTFG--TDESLEDTFKKSIQYMDSFTMHEKLVNIYKMSEKFDQAKQLF 1560

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
             +M KKF      W+     LL Q  Q+ +  ++ +AL  LP+ +HI+ + + A LEF+ 
Sbjct: 1561 NRMTKKFGKVLNTWVLYGSFLLDQNSQDEMHEILAKALNILPKREHIELVKKFAQLEFQK 1620

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDL---IRGLFERAISL 1767
            G  ++GRS+FEG++++ PKR DLW++Y+DQEI+         D D+   +  LFER +S 
Sbjct: 1621 GDPEQGRSLFEGLVADAPKRIDLWNVYIDQEIKQDNKTSDEDDTDIKSKVEDLFERVLSK 1680

Query: 1768 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             +  K+ KF F K+L YE+   +E  I  VK KA EYV++
Sbjct: 1681 KITRKQAKFFFNKWLNYEEDKQDENMIARVKSKAAEYVQN 1720



 Score =  195 bits (495), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 186/683 (27%), Positives = 319/683 (46%), Gaps = 40/683 (5%)

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
           L  IF +G  +   +    +D K   K++I L++    + + L ++ +    +L   VKS
Sbjct: 177 LFKIFKLGSWLKAKITTSHEDYK--NKKRIELTIEPESVNENLEVDDLIVNNILQCSVKS 234

Query: 118 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSD 174
           IEDHG IL  G   ++GF+    L  N+ IDV    PGL++   + S    R  + L   
Sbjct: 235 IEDHGIILDTGKQEYSGFISNKELT-NAQIDVNTIVPGLVILCSIASKPSGR-TINLKPT 292

Query: 175 PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 234
             TVS   T      SID + PG++V   +  + ENG++        GT+ +  +QN F 
Sbjct: 293 TATVSAKKTTVSTISSIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQN-FE 351

Query: 235 TTNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIY 286
               K+ Y     V AR+L V     ++ + L++ P++L      S  +      +G ++
Sbjct: 352 LKELKHKYAIGSTVKARVLAVLLKNGTKKLILSILPHVLQLGDDSSQTEALEAFPIGHVF 411

Query: 287 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 346
           DQ KV+  D+       +  +  S+  +  I     ++ + L   Y  GS  + R++GF 
Sbjct: 412 DQVKVIGNDKHY-----VYVSFGSSSLFGQIHQSKFDDNKSL-LDYSIGSTHKSRVIGFN 465

Query: 347 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPL 403
            ++ L     ++   +       DV  G ++   +++ V  D  G  V+F    K   P 
Sbjct: 466 EVDNLLILTFESKVIDAEYLNVRDVPIGKLLPNVEILKVLEDGVGINVKFFDEFKGFVPG 525

Query: 404 PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRL 462
             MS+ ++V P +KF+VG +   R+L    KR  VT +K LV      ILS   +A    
Sbjct: 526 NQMSDIKLVYPERKFRVGTKTKGRLLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGF 585

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
            T+  + K   +GC V F+  ++ F P++E+      + SS   +GQ+VK RI+      
Sbjct: 586 KTNAIVEKFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDVNKEQ 645

Query: 523 RRINLSFMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPT 576
           +R+ ++ + + + +S     ++  LVSG  +V  V    T ++V+V  +   + +G I  
Sbjct: 646 KRLVVT-LKQSSELSNAQKNEISKLVSGKSIVKTVVVEKTKDSVLVE-LEGSHLRGVIYD 703

Query: 577 EHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINS--AQQLPSDA 631
             L+D + E    +   +  G E  ++L+LD +  +  ++ +AK SLI++  ++  P + 
Sbjct: 704 GQLSDGNYEQNRALAKRLAIG-ETLEVLILDKDLKARTVIATAKKSLIDASKSKSFPVEF 762

Query: 632 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
           S I  N VV GYV ++   G FV F GRLTG             DLSK ++  QS+   +
Sbjct: 763 SDIAVNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCRV 822

Query: 692 LDVNSETGRITLSLKQSCCSSTD 714
           L V+ E  R  L+L  S   + D
Sbjct: 823 LSVDKENERFLLTLNNSSSFTKD 845



 Score = 47.0 bits (110), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 5/169 (2%)

Query: 369  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
            SD+  G V+KG V  + + G  V     + AL  +  +S+  +      FK    ++ ++
Sbjct: 1143 SDLTRGQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKI 1202

Query: 429  LGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQ 485
            +  K + RI +T K++ V  +L I+ ++ +     I  G +T     G FV+      V 
Sbjct: 1203 VNCKQEGRILMTLKESEVNGELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGTVNVS 1262

Query: 486  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
            G    SE+  +      S++  G  VK +I+  I + +R  LS  MK +
Sbjct: 1263 GLCHHSEISENDVDNVKSLFGTGDRVKVKIL-KIDSEKR-QLSLGMKAS 1309


>gi|255953027|ref|XP_002567266.1| Pc21g02010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588977|emb|CAP95098.1| Pc21g02010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1806

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/329 (38%), Positives = 208/329 (63%), Gaps = 28/329 (8%)

Query: 1503 GHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSF 1562
              TD A+  D ++     KK+K+ R+ EI+      L+ + P++  +FERL+   P+SS 
Sbjct: 1479 AQTDAAERSDSED--EGSKKKKKNRKAEIQVDRTGDLDANGPQSVADFERLLLGEPDSSL 1536

Query: 1563 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1622
            +W++YMAF L + ++EKAR+IAERAL+TI + ++ EKLNIWVA  N+EN YG+  ++++ 
Sbjct: 1537 LWLQYMAFQLELGEIEKARAIAERALRTITMGQDAEKLNIWVALLNMENTYGD--DDSLE 1594

Query: 1623 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLL 1680
            +VF+RA QY +P++++  ++ +Y ++ +N+ A +L Y  +KK     S K +      L 
Sbjct: 1595 EVFKRACQYNEPQEIYERMISIYIQSGKNQKASDLFYAALKKKISSQSPKFFYNYASFLF 1654

Query: 1681 KQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPK 1736
                  +  +A++ RAL SLP H H++  S+ A LEF+  NG  +RGR++FEG+LS +PK
Sbjct: 1655 DTMASPDRARALLPRALQSLPAHTHVETTSKFAQLEFRSANGDVERGRTVFEGLLSSFPK 1714

Query: 1737 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYL 1782
            R DLW++ LD EI++GD + +R LFER + L               + PK+ +FLFKK+L
Sbjct: 1715 RIDLWNVLLDLEIKVGDAEQVRRLFERVLGLQSSKKGPVTVDASKKVKPKQARFLFKKWL 1774

Query: 1783 EYEKSV----GEEERIEYVKQKAMEYVES 1807
             +E+ +    G+E+ +E VK +A+ YV+S
Sbjct: 1775 SFEEGLAAANGDEKMVEEVKARAVTYVKS 1803



 Score =  207 bits (528), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 303/1279 (23%), Positives = 544/1279 (42%), Gaps = 165/1279 (12%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--- 57
            + I  G  + G V+ +N  D+ + LP  L G   L   +  L+  L+  +    ++    
Sbjct: 157  KRIVPGAMILGQVSSINAHDIGLSLPNNLTGYVPLTSVSKGLEDRLEKLLNDEGEDDDAE 216

Query: 58   ---------LPTIFHVGQLVSCIVLQLD---DDKKEIGKRKIWLSLRLSLLYKGLSLETV 105
                     L   F++GQ +   V+      DD K   K++I LS+       G S   +
Sbjct: 217  DSSDDESFDLKDHFYLGQYLRAFVVSTGSNPDDPKAKSKKRIELSVDPRQTNTGFSKSDL 276

Query: 106  QEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID---VKPGLLLQGVVR 160
                 + A V S+EDHG ++  G+      GF+  ++   +  +D   +K G +   +V 
Sbjct: 277  VVNSAVQASVVSVEDHGVVMDLGIEGSELKGFM--SSKETDPSVDYSSIKEGSVFLCMVT 334

Query: 161  SIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
              + +  V+ LSS+  T +     +      +I+  +PG      +  +  NG++   + 
Sbjct: 335  GQNPSGNVIKLSSNFQTSASIKKSNYLSSAPTINTFLPGTAAEVLLTEVTSNGMIGKIMG 394

Query: 219  YFTGTVDIFHLQNTFPTTNWKND----YNQHKKVNARILFVDPTSRA--VGLTLNPYLL- 271
                TVD+        + N K D    Y    K+  RI+   P +    VG ++  ++L 
Sbjct: 395  MLDATVDLVQ-----SSINGKVDLEKKYKIGAKIKGRIISTFPAAEPLKVGFSMLDHVLK 449

Query: 272  ---HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 325
                 R P S      +  I  + KVV+VD+GLG+   I  T      +V +S +++ +V
Sbjct: 450  LSSEARGPGSSDDAPAISAIIPEVKVVKVDQGLGVYARIGET--KHMGFVHMSRLSDGKV 507

Query: 326  RKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV- 381
              +++    ++  +    R++G+  ++ L     + S  E       DV  G +VKGKV 
Sbjct: 508  ETIDESSGAFQLDAVHEARVIGYNSIDNLYILSFEKSVIEQPFLRVEDVNVGAIVKGKVE 567

Query: 382  ---IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKR 435
               I  +   G IV    G+  L P  H ++  +  P KKF+ G +L  R+L V  + ++
Sbjct: 568  KLLIGAEGMNGLIVNLADGITGLVPSMHFADTMLQFPEKKFREGQKLSLRILSVNLEKRQ 627

Query: 436  ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 495
            I +T KK+L+ S+ +I   Y + T    + G I  ++ HG  V+FY  V+GF P SE+  
Sbjct: 628  IRLTLKKSLLNSESSIWKDYKDITPSAQSPGTIVSLQSHGAVVQFYGEVRGFLPVSEMSE 687

Query: 496  DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSG 550
                +P+  + +GQVV    +S   +  R+ +S    P+  +E      + +  G LVSG
Sbjct: 688  AYIQDPAQHFRLGQVVNVHALSVDVSLGRLAVS-CKDPSTFTEKYREAFENLHPGHLVSG 746

Query: 551  VVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNES 609
             V   + + V++ +   G     +  E L D      + M S ++ G + + LLVLD + 
Sbjct: 747  TVFEKSNDDVLLKLDESGLV-ARLDAEQLIDGSASKQSSMLSKLRVGQKLNDLLVLDIQR 805

Query: 610  SNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 665
            ++ L+  S++ SL  +A+Q  +P     +   S+V G+V NI   G FV FLG LTG  P
Sbjct: 806  AHRLIKVSSRASLKKAAKQKNIPGQFEEVQEGSLVTGFVRNITPDGVFVEFLGGLTGLLP 865

Query: 666  RSKAVDGQRADLSKTYY---VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 722
            +    D   A+L + +Y     Q++  N+  V+ E  R  LS+K     ++ A+  +   
Sbjct: 866  KRLIED---ANLKQPHYGLTKAQTIVVNVQSVDQEFKRFILSMK--PVQASQAAPKKAAK 920

Query: 723  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK----------VHESNDFGVVVSFEEH 772
              +E IA           +K +  F  G V+E K          V  +++    +   E 
Sbjct: 921  QTDETIA-----NPVDDNIKSMSDFTFGRVVECKVVSIKATQVNVQLADNIQGRIDVSEV 975

Query: 773  SDVYGFITHHQLAGATVESGSVIQAAILDVAKAER--------------LVDLSLKTVFI 818
             D +  I   +      ++  ++ A IL V  A                + +LSLK  +I
Sbjct: 976  FDDWKDIKDRKQPLRFFKAKQILSARILGVHDARNHKFLPISHRTGKYPVFELSLKPSYI 1035

Query: 819  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASV 877
                 A  N +             + V  +    V  V ++ L ++L P     + +   
Sbjct: 1036 KAANPAPLNME------------QVQVGSSWVGFVNNVADDCLWVNLSPNVRGRLRFMDA 1083

Query: 878  S-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSY 936
            S D +     +K F  G ++   V A+   +  G L L           S+K+   K ++
Sbjct: 1084 SDDLSLLTDMEKNFPIGSALKVQVTAV--DAEKGHLNL-----------SAKQGYDKLAF 1130

Query: 937  ---DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 993
                VG ++   +T++   +L ++ G    G +++T++ DD S     + +     + + 
Sbjct: 1131 GDISVGMILPGRVTKVTERQLIMQLGESLVGAVNLTDLADDYSKANPTVHNK---NEVLR 1187

Query: 994  ARIIAKSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDN 1051
            A +IA       K S    LS++PS +  S   +  + +    +V     + G+V +V +
Sbjct: 1188 ACVIAVD-----KSSKKIALSLRPSKVMSSSLPVHDREISSLKEVKPNDIIRGFVRRVTD 1242

Query: 1052 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL---- 1107
                + IS  + A + + D     S L+E++  F   + V G V  ++ E+  L+L    
Sbjct: 1243 SGLFVAISHDITAYVRVSD--LSDSYLKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKE 1300

Query: 1108 -VLRP-FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1165
             VL P F+  I+ K            + EG IV G++ K+      +V+    ++ G  H
Sbjct: 1301 SVLDPNFKAPITLKD-----------LKEGQIVTGKVRKVEEFGAFIVIDGSSNISGLCH 1349

Query: 1166 FTELKNICVSDPLSGYDEG 1184
             +E+ +  V D    YDEG
Sbjct: 1350 RSEMADKRVEDARKLYDEG 1368



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 184/419 (43%), Gaps = 53/419 (12%)

Query: 61   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 107
             F   Q++S  +L + D +           GK  ++ LSL+ S +       L++E VQ 
Sbjct: 991  FFKAKQILSARILGVHDARNHKFLPISHRTGKYPVFELSLKPSYIKAANPAPLNMEQVQV 1050

Query: 108  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKPGLLLQGVVRS 161
            G     +V ++ D    ++   P+  G L   + +++  +      +   G  L+  V +
Sbjct: 1051 GSSWVGFVNNVADDCLWVNLS-PNVRGRLRFMDASDDLSLLTDMEKNFPIGSALKVQVTA 1109

Query: 162  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
            +D  +  + LS+      K    D   IS+ +++PG     RV  + E  +++       
Sbjct: 1110 VDAEKGHLNLSAK-QGYDKLAFGD---ISVGMILPG-----RVTKVTERQLIMQLGESLV 1160

Query: 222  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-- 279
            G V++  L + +   N    +N+++ + A ++ VD +S+ + L+L P  + + + P H  
Sbjct: 1161 GAVNLTDLADDYSKAN-PTVHNKNEVLRACVIAVDKSSKKIALSLRPSKVMSSSLPVHDR 1219

Query: 280  -------VKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 331
                   VK  DI  +  V RV D GL + +    T     AYV +SD+++  +++ +  
Sbjct: 1220 EISSLKEVKPNDII-RGFVRRVTDSGLFVAISHDIT-----AYVRVSDLSDSYLKEWKDS 1273

Query: 332  YKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFG 388
            ++    V+ ++      +G     LK S  +       T  D+K G +V GKV  V+ FG
Sbjct: 1274 FQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPITLKDLKEGQIVTGKVRKVEEFG 1333

Query: 389  AIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 443
            A +   G   +  LC    M++  +    K +  G  +  +++ +   SK+I+ + K +
Sbjct: 1334 AFIVIDGSSNISGLCHRSEMADKRVEDARKLYDEGDAVKAKIIKIDLDSKKISFSLKAS 1392


>gi|238488517|ref|XP_002375496.1| rRNA biogenesis protein RRP5, putative [Aspergillus flavus NRRL3357]
 gi|220697884|gb|EED54224.1| rRNA biogenesis protein RRP5, putative [Aspergillus flavus NRRL3357]
          Length = 1827

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 26/302 (8%)

Query: 1530 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEKAR IAERAL+
Sbjct: 1524 EIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLRYMAFQLELGEVEKARDIAERALR 1583

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
            TI I ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++V+  L+ +Y ++ 
Sbjct: 1584 TITIGQDAEKLNIWVAMLNLENTYGN--DDTIDEVFKRACQYNDTQEVYERLISIYIQSG 1641

Query: 1650 QNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKF 1706
            +N+ ADEL    + KK   S K +L     L       E  +A++ RAL SLP H H++ 
Sbjct: 1642 KNEKADELFQTALKKKISQSPKFFLNYASFLFDNMAAPERGRALLPRALQSLPSHTHVET 1701

Query: 1707 ISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1764
             S+ A LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R LFER 
Sbjct: 1702 TSKFAQLEFRSEHGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKNGDAEQVRRLFERV 1761

Query: 1765 ISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYV 1805
            + +               L PK+ +F FKK+L +E+ +     G E+ +E +K KA +YV
Sbjct: 1762 LGIRDSKKGVASVEASKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKAKAADYV 1821

Query: 1806 ES 1807
            +S
Sbjct: 1822 KS 1823



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 175/720 (24%), Positives = 320/720 (44%), Gaps = 64/720 (8%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--- 57
           + +  G  + G V+ ++  D+ + LP  L G   L   +  L+  ++N +  +E+     
Sbjct: 158 KRVVPGTMVLGQVSSISAHDIGLSLPNNLTGYVPLTAVSKRLEEKIENLLNEDENAEEDD 217

Query: 58  -----------LPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLE 103
                      L   F++GQ +   V+ + +   D     +++I L++       GL   
Sbjct: 218 DDDDDDEDSIDLSDYFYLGQYLRAYVVSVGNNAADASSKSRKRIELTVDPRQANFGLLKS 277

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVR 160
            + +   + A V S+EDHG ++  G+      GF+ +  +   +    +K G +   +V 
Sbjct: 278 DLVDNTAVQASVVSVEDHGLVMDLGIEGADIKGFMSKKEIDPKTDYSTIKEGSVFLCMVT 337

Query: 161 SIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
             +    V+ LS++  + S  + K        +I+  +PG      +  +  +G     +
Sbjct: 338 GQNANGNVLKLSANLQS-SGSIKKSHYLSTAPTINSFLPGTAAEILLTEVTSSGATGKIM 396

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL---- 271
                TVD+          +  N Y    KV  R++   P S    VG +L  ++     
Sbjct: 397 GMLDTTVDLVQSGGNSSPDDLANKYKIGAKVKGRLISTFPASDPYKVGFSLLDHVCKFTS 456

Query: 272 HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
             + P S      +  I  ++KV++VD GLG+ + I ST      +V +S +A+ +V  +
Sbjct: 457 ETQGPGSSEDAPAISAIVPEAKVIKVDPGLGVYVQIGST--KHVGFVHVSKLADGQVESI 514

Query: 329 EKKY---KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV---- 381
             +Y   +  S    R++G+  L+ L     + S  +       DV  G VVKGK+    
Sbjct: 515 SAEYGPFRTDSTHEGRVVGYSALDNLYLLSFERSVIDQPFLRIEDVTIGAVVKGKIEKLL 574

Query: 382 IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITV 438
           I      G IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +
Sbjct: 575 IGPSGLDGLIVALADGITGLVPSMHFADTALQFPEKKFREGMTVSARILSVNPEKRQIRL 634

Query: 439 THKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 498
           T KK+L+ S+ AI   Y        + G I  ++ HG  V+FY  V+GF P SE+     
Sbjct: 635 TLKKSLLNSESAIWKDYDSIVAGAQSPGTIVNLKPHGAVVQFYGSVRGFLPVSEMSEAYI 694

Query: 499 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVD 553
            +PS  + +GQVV    +S   +  ++ +S    P+  +E      + +  G LV+G V 
Sbjct: 695 KDPSQHFRLGQVVNVHALSVDSSLEKLAVS-CKDPSTFTETYKKAFESIHPGLLVTGTVF 753

Query: 554 VVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLVLDNESS 610
             + + +++ +   G     +  +H+ D     + +T+ K  I+ G + ++LLVLD + +
Sbjct: 754 EKSSDDLLLKLDDYGLV-ARLNLDHVVDGSPSKQSSTLSK--IRVGQKLNELLVLDIQRT 810

Query: 611 NLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
             L+  S + SL  +A+Q  +P+    +   + V G+V NI  TG FV FLG + G  P+
Sbjct: 811 RRLIRVSGRASLKKAAKQGLIPASFEDVQEGAEVTGFVRNITMTGVFVEFLGGVIGLVPK 870



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 179/409 (43%), Gaps = 51/409 (12%)

Query: 61   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 107
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1002 FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1061

Query: 108  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 161
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1062 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1120

Query: 162  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1121 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1171

Query: 222  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---- 277
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1172 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1230

Query: 278  -----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 332
                   VKV D+         D GL + L    T     AYV +SD+++  +++ +  +
Sbjct: 1231 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVT-----AYVRVSDLSDSYLKEWKDSF 1285

Query: 333  KEGSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFG 388
            +    V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FG
Sbjct: 1286 QVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFG 1344

Query: 389  AIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
            A +   G   +  LC    M+E  +      +  G  +  ++L +  K+
Sbjct: 1345 AFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKIDRKQ 1393



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 416  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 470
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1106 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1156

Query: 471  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 530
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1157 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1214

Query: 531  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1215 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1272

Query: 579  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 633
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1273 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1326

Query: 634  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1327 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1386

Query: 692  LDVNSETGRITLSLKQSCCSSTD 714
            L ++ + G+I+  LK S     D
Sbjct: 1387 LKIDRKQGKISFGLKASYFKDED 1409



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 159/371 (42%), Gaps = 33/371 (8%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIF 62
            + +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +        F
Sbjct: 1057 EQVQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH--------F 1108

Query: 63   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
             +G  +   V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + +  
Sbjct: 1109 PIGSALRVNVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVTERQ 1161

Query: 123  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDT 177
             I+     +  G +   +L ++      P +     +L+  V S+D+  K + LS  P  
Sbjct: 1162 VIMQL-TDTIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLRPSK 1219

Query: 178  V--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
            V  S    +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L +++  
Sbjct: 1220 VLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSY-L 1278

Query: 236  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKV 291
              WK+ +   + V  R+  VDP    + + L   +L  + +AP     +K G I    K+
Sbjct: 1279 KEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-TGKI 1337

Query: 292  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 351
             +V+     ++   S  +S   +   S++AE  V      Y EG  V+ +IL     +G 
Sbjct: 1338 RKVEEFGAFIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRKQGK 1395

Query: 352  ATGILKASAFE 362
             +  LKAS F+
Sbjct: 1396 ISFGLKASYFK 1406


>gi|317136747|ref|XP_001727253.2| rRNA biogenesis protein RRP5 [Aspergillus oryzae RIB40]
          Length = 1818

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 26/302 (8%)

Query: 1530 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEKAR IAERAL+
Sbjct: 1515 EIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLRYMAFQLELGEVEKAREIAERALR 1574

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
            TI I ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++V+  L+ +Y ++ 
Sbjct: 1575 TITIGQDAEKLNIWVAMLNLENTYGN--DDTIDEVFKRACQYNDTQEVYERLISIYIQSG 1632

Query: 1650 QNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKF 1706
            +N+ ADEL    + KK   S K +L     L       E  +A++ RAL SLP H H++ 
Sbjct: 1633 KNEKADELFQTALKKKISQSPKFFLNYASFLFDNMAAPERGRALLPRALQSLPSHTHVET 1692

Query: 1707 ISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1764
             S+ A LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R LFER 
Sbjct: 1693 TSKFAQLEFRSEHGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKNGDAEQVRRLFERV 1752

Query: 1765 ISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYV 1805
            + +               L PK+ +F FKK+L +E+ +     G E+ +E +K KA +YV
Sbjct: 1753 LGIRDSKKGVASVEASKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKAKAADYV 1812

Query: 1806 ES 1807
            +S
Sbjct: 1813 KS 1814



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 175/720 (24%), Positives = 320/720 (44%), Gaps = 64/720 (8%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--- 57
           + +  G  + G V+ ++  D+ + LP  L G   L   +  L+  ++N +  +E+     
Sbjct: 149 KRVVPGTMVLGQVSSISAHDIGLSLPNNLTGYVPLTAVSKRLEEKIENLLNEDENAEEDD 208

Query: 58  -----------LPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLE 103
                      L   F++GQ +   V+ + +   D     +++I L++       GL   
Sbjct: 209 DDDDDDEDSIDLSDYFYLGQYLRAYVVSVGNNAADASSKSRKRIELTVDPRQANFGLLKS 268

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVR 160
            + +   + A V S+EDHG ++  G+      GF+ +  +   +    +K G +   +V 
Sbjct: 269 DLVDNTAVQASVVSVEDHGLVMDLGIEGADIKGFMSKKEIDPKTDYSTIKEGSVFLCMVT 328

Query: 161 SIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
             +    V+ LS++  + S  + K        +I+  +PG      +  +  +G     +
Sbjct: 329 GQNANGNVLKLSANLQS-SGSIKKSHYLSTAPTINSFLPGTAAEILLTEVTSSGATGKIM 387

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL---- 271
                TVD+          +  N Y    KV  R++   P S    VG +L  ++     
Sbjct: 388 GMLDTTVDLVQSGGNSSPDDLANKYKIGAKVKGRLISTFPASDPYKVGFSLLDHVCKFTS 447

Query: 272 HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
             + P S      +  I  ++KV++VD GLG+ + I ST      +V +S +A+ +V  +
Sbjct: 448 ETQGPGSSEDAPAISAIVPEAKVIKVDPGLGVYVQIGST--KHVGFVHVSKLADGQVESI 505

Query: 329 EKKY---KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV---- 381
             +Y   +  S    R++G+  L+ L     + S  +       DV  G VVKGK+    
Sbjct: 506 SAEYGPFRTDSTHEGRVVGYSALDNLYLLSFERSVIDQPFLRIEDVTIGAVVKGKIEKLL 565

Query: 382 IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITV 438
           I      G IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +
Sbjct: 566 IGPSGLDGLIVALADGITGLVPSMHFADTALQFPEKKFREGMTVSARILSVNPEKRQIRL 625

Query: 439 THKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 498
           T KK+L+ S+ AI   Y        + G I  ++ HG  V+FY  V+GF P SE+     
Sbjct: 626 TLKKSLLNSESAIWKDYDSIVAGAQSPGTIVNLKPHGAVVQFYGSVRGFLPVSEMSEAYI 685

Query: 499 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVD 553
            +PS  + +GQVV    +S   +  ++ +S    P+  +E      + +  G LV+G V 
Sbjct: 686 KDPSQHFRLGQVVNVHALSVDSSLEKLAVS-CKDPSTFTETYKKAFESIHPGLLVTGTVF 744

Query: 554 VVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLVLDNESS 610
             + + +++ +   G     +  +H+ D     + +T+ K  I+ G + ++LLVLD + +
Sbjct: 745 EKSSDDLLLKLDDYGLV-ARLNLDHVVDGSPSKQSSTLSK--IRVGQKLNELLVLDIQRT 801

Query: 611 NLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
             L+  S + SL  +A+Q  +P+    +   + V G+V NI  TG FV FLG + G  P+
Sbjct: 802 RRLIRVSGRASLKKAAKQGLIPASFEDVQEGAEVTGFVRNITMTGVFVEFLGGVIGLVPK 861



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 179/409 (43%), Gaps = 51/409 (12%)

Query: 61   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 107
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 993  FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1052

Query: 108  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 161
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1053 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1111

Query: 162  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1112 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1162

Query: 222  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---- 277
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1163 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1221

Query: 278  -----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 332
                   VKV D+         D GL + L    T     AYV +SD+++  +++ +  +
Sbjct: 1222 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVT-----AYVRVSDLSDSYLKEWKDSF 1276

Query: 333  KEGSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFG 388
            +    V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FG
Sbjct: 1277 QVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFG 1335

Query: 389  AIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
            A +   G   +  LC    M+E  +      +  G  +  ++L +  K+
Sbjct: 1336 AFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKIDRKQ 1384



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 416  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 470
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1097 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1147

Query: 471  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 530
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1148 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1205

Query: 531  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1206 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1263

Query: 579  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 633
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1264 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1317

Query: 634  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1318 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1377

Query: 692  LDVNSETGRITLSLKQSCCSSTD 714
            L ++ + G+I+  LK S     D
Sbjct: 1378 LKIDRKQGKISFGLKASYFKDED 1400



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 159/371 (42%), Gaps = 33/371 (8%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIF 62
            + +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +        F
Sbjct: 1048 EQVQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH--------F 1099

Query: 63   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
             +G  +   V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + +  
Sbjct: 1100 PIGSALRVNVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVTERQ 1152

Query: 123  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDT 177
             I+     +  G +   +L ++      P +     +L+  V S+D+  K + LS  P  
Sbjct: 1153 VIMQL-TDTIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLRPSK 1210

Query: 178  V--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
            V  S    +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L +++  
Sbjct: 1211 VLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSY-L 1269

Query: 236  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKV 291
              WK+ +   + V  R+  VDP    + + L   +L  + +AP     +K G I    K+
Sbjct: 1270 KEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-TGKI 1328

Query: 292  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 351
             +V+     ++   S  +S   +   S++AE  V      Y EG  V+ +IL     +G 
Sbjct: 1329 RKVEEFGAFIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRKQGK 1386

Query: 352  ATGILKASAFE 362
             +  LKAS F+
Sbjct: 1387 ISFGLKASYFK 1397


>gi|83770281|dbj|BAE60414.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1827

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 26/302 (8%)

Query: 1530 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEKAR IAERAL+
Sbjct: 1524 EIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLRYMAFQLELGEVEKAREIAERALR 1583

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
            TI I ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++V+  L+ +Y ++ 
Sbjct: 1584 TITIGQDAEKLNIWVAMLNLENTYGN--DDTIDEVFKRACQYNDTQEVYERLISIYIQSG 1641

Query: 1650 QNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKF 1706
            +N+ ADEL    + KK   S K +L     L       E  +A++ RAL SLP H H++ 
Sbjct: 1642 KNEKADELFQTALKKKISQSPKFFLNYASFLFDNMAAPERGRALLPRALQSLPSHTHVET 1701

Query: 1707 ISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1764
             S+ A LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R LFER 
Sbjct: 1702 TSKFAQLEFRSEHGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKNGDAEQVRRLFERV 1761

Query: 1765 ISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYV 1805
            + +               L PK+ +F FKK+L +E+ +     G E+ +E +K KA +YV
Sbjct: 1762 LGIRDSKKGVASVEASKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKAKAADYV 1821

Query: 1806 ES 1807
            +S
Sbjct: 1822 KS 1823



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 175/720 (24%), Positives = 320/720 (44%), Gaps = 64/720 (8%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--- 57
           + +  G  + G V+ ++  D+ + LP  L G   L   +  L+  ++N +  +E+     
Sbjct: 158 KRVVPGTMVLGQVSSISAHDIGLSLPNNLTGYVPLTAVSKRLEEKIENLLNEDENAEEDD 217

Query: 58  -----------LPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLE 103
                      L   F++GQ +   V+ + +   D     +++I L++       GL   
Sbjct: 218 DDDDDDEDSIDLSDYFYLGQYLRAYVVSVGNNAADASSKSRKRIELTVDPRQANFGLLKS 277

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVR 160
            + +   + A V S+EDHG ++  G+      GF+ +  +   +    +K G +   +V 
Sbjct: 278 DLVDNTAVQASVVSVEDHGLVMDLGIEGADIKGFMSKKEIDPKTDYSTIKEGSVFLCMVT 337

Query: 161 SIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
             +    V+ LS++  + S  + K        +I+  +PG      +  +  +G     +
Sbjct: 338 GQNANGNVLKLSANLQS-SGSIKKSHYLSTAPTINSFLPGTAAEILLTEVTSSGATGKIM 396

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL---- 271
                TVD+          +  N Y    KV  R++   P S    VG +L  ++     
Sbjct: 397 GMLDTTVDLVQSGGNSSPDDLANKYKIGAKVKGRLISTFPASDPYKVGFSLLDHVCKFTS 456

Query: 272 HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
             + P S      +  I  ++KV++VD GLG+ + I ST      +V +S +A+ +V  +
Sbjct: 457 ETQGPGSSEDAPAISAIVPEAKVIKVDPGLGVYVQIGST--KHVGFVHVSKLADGQVESI 514

Query: 329 EKKY---KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV---- 381
             +Y   +  S    R++G+  L+ L     + S  +       DV  G VVKGK+    
Sbjct: 515 SAEYGPFRTDSTHEGRVVGYSALDNLYLLSFERSVIDQPFLRIEDVTIGAVVKGKIEKLL 574

Query: 382 IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITV 438
           I      G IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +
Sbjct: 575 IGPSGLDGLIVALADGITGLVPSMHFADTALQFPEKKFREGMTVSARILSVNPEKRQIRL 634

Query: 439 THKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 498
           T KK+L+ S+ AI   Y        + G I  ++ HG  V+FY  V+GF P SE+     
Sbjct: 635 TLKKSLLNSESAIWKDYDSIVAGAQSPGTIVNLKPHGAVVQFYGSVRGFLPVSEMSEAYI 694

Query: 499 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVD 553
            +PS  + +GQVV    +S   +  ++ +S    P+  +E      + +  G LV+G V 
Sbjct: 695 KDPSQHFRLGQVVNVHALSVDSSLEKLAVS-CKDPSTFTETYKKAFESIHPGLLVTGTVF 753

Query: 554 VVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLVLDNESS 610
             + + +++ +   G     +  +H+ D     + +T+ K  I+ G + ++LLVLD + +
Sbjct: 754 EKSSDDLLLKLDDYGLV-ARLNLDHVVDGSPSKQSSTLSK--IRVGQKLNELLVLDIQRT 810

Query: 611 NLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
             L+  S + SL  +A+Q  +P+    +   + V G+V NI  TG FV FLG + G  P+
Sbjct: 811 RRLIRVSGRASLKKAAKQGLIPASFEDVQEGAEVTGFVRNITMTGVFVEFLGGVIGLVPK 870



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 179/409 (43%), Gaps = 51/409 (12%)

Query: 61   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 107
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1002 FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1061

Query: 108  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 161
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1062 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1120

Query: 162  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1121 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1171

Query: 222  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---- 277
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1172 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1230

Query: 278  -----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 332
                   VKV D+         D GL + L    T     AYV +SD+++  +++ +  +
Sbjct: 1231 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVT-----AYVRVSDLSDSYLKEWKDSF 1285

Query: 333  KEGSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFG 388
            +    V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FG
Sbjct: 1286 QVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFG 1344

Query: 389  AIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
            A +   G   +  LC    M+E  +      +  G  +  ++L +  K+
Sbjct: 1345 AFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKIDRKQ 1393



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 416  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 470
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1106 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1156

Query: 471  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 530
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1157 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1214

Query: 531  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1215 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1272

Query: 579  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 633
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1273 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1326

Query: 634  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1327 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1386

Query: 692  LDVNSETGRITLSLKQSCCSSTD 714
            L ++ + G+I+  LK S     D
Sbjct: 1387 LKIDRKQGKISFGLKASYFKDED 1409



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 159/371 (42%), Gaps = 33/371 (8%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIF 62
            + +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +        F
Sbjct: 1057 EQVQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH--------F 1108

Query: 63   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
             +G  +   V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + +  
Sbjct: 1109 PIGSALRVNVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVTERQ 1161

Query: 123  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDT 177
             I+     +  G +   +L ++      P +     +L+  V S+D+  K + LS  P  
Sbjct: 1162 VIMQL-TDTIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLRPSK 1219

Query: 178  V--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
            V  S    +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L +++  
Sbjct: 1220 VLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSY-L 1278

Query: 236  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKV 291
              WK+ +   + V  R+  VDP    + + L   +L  + +AP     +K G I    K+
Sbjct: 1279 KEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-TGKI 1337

Query: 292  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 351
             +V+     ++   S  +S   +   S++AE  V      Y EG  V+ +IL     +G 
Sbjct: 1338 RKVEEFGAFIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRKQGK 1395

Query: 352  ATGILKASAFE 362
             +  LKAS F+
Sbjct: 1396 ISFGLKASYFK 1406


>gi|391866697|gb|EIT75965.1| rRNA processing protein [Aspergillus oryzae 3.042]
          Length = 1827

 Score =  231 bits (588), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 26/302 (8%)

Query: 1530 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEKAR IAERAL+
Sbjct: 1524 EIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLRYMAFQLELGEVEKAREIAERALR 1583

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
            TI I ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++V+  L+ +Y ++ 
Sbjct: 1584 TITIGQDAEKLNIWVAMLNLENTYGN--DDTIDEVFKRACQYNDTQEVYERLISIYIQSG 1641

Query: 1650 QNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKF 1706
            +N+ ADEL    + KK   S K +L     L       E  +A++ RAL SLP H H++ 
Sbjct: 1642 KNEKADELFQTALKKKISQSPKFFLNYASFLFDNMAAPERGRALLPRALQSLPSHTHVET 1701

Query: 1707 ISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1764
             S+ A LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R LFER 
Sbjct: 1702 TSKFAQLEFRSEHGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKNGDAEQVRRLFERV 1761

Query: 1765 ISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYV 1805
            + +               L PK+ +F FKK+L +E+ +     G E+ +E +K KA +YV
Sbjct: 1762 LGIRDSKKGVASVEASKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKAKAADYV 1821

Query: 1806 ES 1807
            +S
Sbjct: 1822 KS 1823



 Score =  154 bits (390), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 175/720 (24%), Positives = 320/720 (44%), Gaps = 64/720 (8%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--- 57
           + +  G  + G V+ ++  D+ + LP  L G   L   +  L+  ++N +  +E+     
Sbjct: 158 KRVVPGTMVLGQVSSISAHDIGLSLPNNLTGYVPLTAVSKRLEEKIENLLNEDENAEEDD 217

Query: 58  -----------LPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLE 103
                      L   F++GQ +   V+ + +   D     +++I L++       GL   
Sbjct: 218 DDDDDDEDSIDLSDYFYLGQYLRAYVVSVGNNAADASSKSRKRIELTVDPRQANFGLLKS 277

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVR 160
            + +   + A V S+EDHG ++  G+      GF+ +  +   +    +K G +   +V 
Sbjct: 278 DLVDNTAVQASVVSVEDHGLVMDLGIEGADIKGFMSKKEIDPKTDYSTIKEGSVFLCMVT 337

Query: 161 SIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
             +    V+ LS++  + S  + K        +I+  +PG      +  +  +G     +
Sbjct: 338 GQNANGNVLKLSANLQS-SGSIKKSHYLSTAPTINSFLPGTAAEIFLTEVTSSGATGKIM 396

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL---- 271
                TVD+          +  N Y    KV  R++   P S    VG +L  ++     
Sbjct: 397 GMLDTTVDLVQSGGNSSPDDLANKYKIGAKVKGRLISTFPASDPYKVGFSLLDHVCKFTS 456

Query: 272 HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
             + P S      +  I  ++KV++VD GLG+ + I ST      +V +S +A+ +V  +
Sbjct: 457 ETQGPGSSEDAPAISAIVPEAKVIKVDPGLGVYVQIGST--KHVGFVHVSKLADGQVESI 514

Query: 329 EKKY---KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV---- 381
             +Y   +  S    R++G+  L+ L     + S  +       DV  G VVKGK+    
Sbjct: 515 SAEYGPFRTDSTHEGRVVGYSALDNLYLLSFERSVIDQPFLRIEDVTIGAVVKGKIEKLL 574

Query: 382 IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITV 438
           I      G IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +
Sbjct: 575 IGPSGLDGLIVALADGITGLVPSMHFADTALQFPEKKFREGMTVSARILSVNPEKRQIRL 634

Query: 439 THKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 498
           T KK+L+ S+ AI   Y        + G I  ++ HG  V+FY  V+GF P SE+     
Sbjct: 635 TLKKSLLNSESAIWKDYDSIVAGAQSPGTIVNLKPHGAVVQFYGSVRGFLPVSEMSEAYI 694

Query: 499 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVD 553
            +PS  + +GQVV    +S   +  ++ +S    P+  +E      + +  G LV+G V 
Sbjct: 695 KDPSQHFRLGQVVNVHALSVDSSLEKLAVS-CKDPSTFTETYKKAFESIHPGLLVTGTVF 753

Query: 554 VVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLVLDNESS 610
             + + +++ +   G     +  +H+ D     + +T+ K  I+ G + ++LLVLD + +
Sbjct: 754 EKSSDDLLLKLDDYGLV-ARLNLDHVVDGSPSKQSSTLSK--IRVGQKLNELLVLDIQRT 810

Query: 611 NLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
             L+  S + SL  +A+Q  +P+    +   + V G+V NI  TG FV FLG + G  P+
Sbjct: 811 RRLIRVSGRASLKKAAKQGLIPASFEDVQEGAEVTGFVRNITMTGVFVEFLGGVIGLVPK 870



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 179/409 (43%), Gaps = 51/409 (12%)

Query: 61   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 107
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1002 FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1061

Query: 108  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 161
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1062 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1120

Query: 162  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1121 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1171

Query: 222  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---- 277
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1172 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1230

Query: 278  -----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 332
                   VKV D+         D GL + L    T     AYV +SD+++  +++ +  +
Sbjct: 1231 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVT-----AYVRVSDLSDSYLKEWKDSF 1285

Query: 333  KEGSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFG 388
            +    V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FG
Sbjct: 1286 QVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFG 1344

Query: 389  AIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
            A +   G   +  LC    M+E  +      +  G  +  ++L +  K+
Sbjct: 1345 AFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKIDRKQ 1393



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 416  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 470
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1106 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1156

Query: 471  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 530
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1157 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1214

Query: 531  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1215 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1272

Query: 579  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 633
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1273 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1326

Query: 634  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1327 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1386

Query: 692  LDVNSETGRITLSLKQSCCSSTD 714
            L ++ + G+I+  LK S     D
Sbjct: 1387 LKIDRKQGKISFGLKASYFKDED 1409



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 159/371 (42%), Gaps = 33/371 (8%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIF 62
            + +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +        F
Sbjct: 1057 EQVQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH--------F 1108

Query: 63   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
             +G  +   V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + +  
Sbjct: 1109 PIGSALRVNVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVTERQ 1161

Query: 123  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDT 177
             I+     +  G +   +L ++      P +     +L+  V S+D+  K + LS  P  
Sbjct: 1162 VIMQL-TDTIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLRPSK 1219

Query: 178  V--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
            V  S    +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L +++  
Sbjct: 1220 VLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSY-L 1278

Query: 236  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKV 291
              WK+ +   + V  R+  VDP    + + L   +L  + +AP     +K G I    K+
Sbjct: 1279 KEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-TGKI 1337

Query: 292  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 351
             +V+     ++   S  +S   +   S++AE  V      Y EG  V+ +IL     +G 
Sbjct: 1338 RKVEEFGAFIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRKQGK 1395

Query: 352  ATGILKASAFE 362
             +  LKAS F+
Sbjct: 1396 ISFGLKASYFK 1406


>gi|443896583|dbj|GAC73927.1| rRNA processing protein Rrp5 [Pseudozyma antarctica T-34]
          Length = 1563

 Score =  230 bits (587), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 120/279 (43%), Positives = 179/279 (64%), Gaps = 7/279 (2%)

Query: 1533 AAEERL---LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            A EE L   L   AP +  +FERL+  SPNSSF+WI++M+F L ++DV+KAR IA RAL+
Sbjct: 1271 ALEEDLTADLATKAPESSSDFERLLLGSPNSSFLWIQFMSFALQLSDVDKAREIARRALK 1330

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
             IN REE E++N+W+A  NLEN YG+  +E +   F+ A+Q  D   ++L ++ + E  +
Sbjct: 1331 VINYREEQERMNVWIALLNLENTYGS--DETLEATFKEAVQANDGFTMYLKMVNILEAAD 1388

Query: 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1708
            +N  A+E+  K   K+  +   W+   + LL+  Q +  +A++ RA+ +L +  H   I+
Sbjct: 1389 KNDAAEEMFVKAKAKYSTTPDFWIEYARYLLRTGQADAARALLPRAMQALDKRDHTSTIT 1448

Query: 1709 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD-VDLIRGLFERAISL 1767
            + AI EFK G A+RGR++FEG++  YPKR DLW  YLDQE RL D  + +R LFER ++L
Sbjct: 1449 RFAINEFKLGDAERGRTIFEGLVDSYPKRLDLWWQYLDQESRLDDNQNQVRNLFERTLTL 1508

Query: 1768 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
             L  KK K L KK+LEYEK+ G+ +    V  KA ++V+
Sbjct: 1509 KLTAKKGKSLLKKWLEYEKAHGDAKSQNAVLAKAKQFVD 1547



 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 150/560 (26%), Positives = 252/560 (45%), Gaps = 53/560 (9%)

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSLETV 105
           L  +FHVGQ +   V+Q+       G+            R++ LSL   L+  G+S+  +
Sbjct: 239 LRDLFHVGQWLVASVVQVRGGDVARGRPTREGGEYEKESRRVELSLAPQLVNAGVSVSDL 298

Query: 106 QEGMVLTAYVKSIEDHGYILHFGLPSFTGF--------LPRNNLAENSGIDVKPGLLLQG 157
             G  L+A + S+EDHGYIL  G+  F GF        LP N  A  +G  ++ G ++  
Sbjct: 299 DAGATLSATISSVEDHGYILDSGIGEFRGFVSFAEAAKLPENFHAGKNGKSLQVGSVVFA 358

Query: 158 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
            +  +   ++    + DP  VS    K +   SI  ++PG +    V + L  G+ +   
Sbjct: 359 KITKVPENKRSFEATLDPKAVSTTPIKHVP--SITAVLPGTLTKVLVTAALPTGLNVKLF 416

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 264
             F  T+D FHL       +  + Y +  K  AR+L+  + P S           R  GL
Sbjct: 417 GMFDATIDRFHLPELPEGKDIPDVYKEGSKHVARVLWDLLSPPSAALQGENPEHERKFGL 476

Query: 265 TLNPYLLHNRAPPS-------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 317
           +L P +L  +AP +       H        +  VV+     GL++ +  T +    +V I
Sbjct: 477 SLAPQVLSLQAPVAKDQQLLQHAYPIGTPIKVTVVQTVTDWGLIVSVKGTDLR--GFVHI 534

Query: 318 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 374
           S V+++ V  L      + +G+  + R++G    +      LKAS  E      S+V+ G
Sbjct: 535 SQVSDDHVVALPPSSGPFCKGTEHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVG 594

Query: 375 MVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
            VV   +I +    AI +Q  G V  +    H ++ ++ +P K+FK G ++  RVL V  
Sbjct: 595 EVVNATIIKLGLPNAIFLQLQGHVDGVVFANHFADVKLTQPEKRFKPGLQVKARVLDVDP 654

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
              RI +T KK+LVKS L I+ S  +A   ++TH  + +++ +   V  + G++   P  
Sbjct: 655 SRNRIVLTCKKSLVKSDLPIVGSMQDARVGVVTHATVFRVQVNSIIVNLFGGLKALIPGR 714

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE--DDLVKLGSLV 548
           E       +  S +  G+VVK RI      ++R+  S     P  +++   D V++G  V
Sbjct: 715 EASEASFEDVKSSFTEGKVVKMRITEVDYENQRLVGSIKQASPEFLAKLNVDAVEVGEKV 774

Query: 549 SGVVDVVTPNAVVVYVIAKG 568
            G V  V    VV+ ++  G
Sbjct: 775 VGKVAAVHKEVVVLSLVPSG 794



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 141/664 (21%), Positives = 249/664 (37%), Gaps = 77/664 (11%)

Query: 202  TRVQSILENGVMLSFL-TYFTGTVDIFHLQNTF-----PTTNWKNDYNQHKKVNARILFV 255
            T VQ++ + G+++S   T   G V I  + +       P++       +HK   AR++  
Sbjct: 509  TVVQTVTDWGLIVSVKGTDLRGFVHISQVSDDHVVALPPSSGPFCKGTEHK---ARVVGH 565

Query: 256  DPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYV 315
             PT R + L+L   +L  +              + ++++     + L +          V
Sbjct: 566  SPTDRTLQLSLKASVLERKFMRVSEVEVGEVVNATIIKLGLPNAIFLQLQG---HVDGVV 622

Query: 316  TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVK 372
              +  A+ ++ + EK++K G  V+ R+L             K S  +    +V +  D +
Sbjct: 623  FANHFADVKLTQPEKRFKPGLQVKARVLDVDPSRNRIVLTCKKSLVKSDLPIVGSMQDAR 682

Query: 373  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE--FEIVKPGKKFKVGAELVFRVLG 430
             G+V    V  V     IV   GG+KAL P    SE  FE VK    F  G  +  R+  
Sbjct: 683  VGVVTHATVFRVQVNSIIVNLFGGLKALIPGREASEASFEDVK--SSFTEGKVVKMRITE 740

Query: 431  V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY-NGVQGF 487
            V  +++R+  + K+   +    +     E  ++++  G +  + K    +    +GV+  
Sbjct: 741  VDYENQRLVGSIKQASPEFLAKLNVDAVEVGEKVV--GKVAAVHKEVVVLSLVPSGVRAL 798

Query: 488  APRSELGLDPGCEPSSMYHV-------------------GQVVKCRIMSSIPASRRINLS 528
               S L    G     +                      G V+    + S   +R  N S
Sbjct: 799  LSLSVLAAMRGTSAEELLESLEEDQEIDNLVVSVKNPEKGLVIVADKVRSSKTARDANGS 858

Query: 529  FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 588
                   VS    V+ G++V G V       +   V     ++ T+    LAD       
Sbjct: 859  -------VSTSAQVEQGAVVKGRVIQKNEKYLDCVVALGTATRATLHITDLADDFASGVS 911

Query: 589  MKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHG 642
            + S   PG   D  +V L     + ++S + S I+ +    +D      + +     V G
Sbjct: 912  LPS---PGDNVDCFVVSLKANGKSGVVSTRASRISPSNAEVTDVEITAITELAKGQKVRG 968

Query: 643  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 702
            +V  I   G FV    +L       +  D    D  K + VGQ V   I+DVN+    I 
Sbjct: 969  FVKAITNVGVFVSLGRKLDARVQVRELFDEFVRDWKKRFTVGQVVSGTIMDVNANQNEIE 1028

Query: 703  LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 762
            +SLK     ST  S        +E+     +        K +  F  G  ++G +    D
Sbjct: 1029 MSLK-----STPGSIKPRAERAQER-----AEADGKKRPKRLTDFKAGDKVKGFIKNIID 1078

Query: 763  FGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKT 815
            FGV V   E ++V G    ++L+    +        G  ++A +L + + +R +   LK 
Sbjct: 1079 FGVFVQI-EGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRINEEKRKISFGLKP 1137

Query: 816  VFID 819
             + D
Sbjct: 1138 SYFD 1141


>gi|328875120|gb|EGG23485.1| HAT repeat-containing protein [Dictyostelium fasciculatum]
          Length = 850

 Score =  229 bits (583), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/302 (40%), Positives = 189/302 (62%), Gaps = 7/302 (2%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAF 1570
            + K  +  KK  K E E+ I   EE LL++++ P +  +FER++  SPNSS++WI+YM+F
Sbjct: 549  NTKKQKIQKKLGKLEHERVISEREETLLDQNSVPESSGDFERVLLGSPNSSYIWIQYMSF 608

Query: 1571 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1630
             L M++++KAR I ERAL+ I   E  E+ N+WVA  N+EN YG   E+ ++ +F+RA+ 
Sbjct: 609  YLGMSEIQKARDIGERALKKILSSEVVEQRNVWVALLNMENMYGG--EDTLMTLFKRAIL 666

Query: 1631 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQA 1689
            Y DPK+++ A++ + E TE+    D       KK++HS K W+R  + L K QQ + +  
Sbjct: 667  YQDPKRMYFAIIQILEHTEKLDRVDPYFAMFFKKYRHSSKAWIRYAEYLAKTQQLDKLSE 726

Query: 1690 VVQR--ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1747
             + R   +  L + K I   S+   LEFK+G  +RGR++FE ++S  P RTDLW++Y+DQ
Sbjct: 727  TLSRLPRVEQLKKKKLIMITSKIGQLEFKHGNPERGRTVFESLISSNPSRTDLWNVYIDQ 786

Query: 1748 EIRL-GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            E++   +   IR LF+R ISL    + +K  FK+YL YEK  G+E  +  VKQ A++YVE
Sbjct: 787  ELKQENNAKNIRRLFDRCISLKTSDRNIKQFFKRYLSYEKDHGDESSVNNVKQLAIKYVE 846

Query: 1807 ST 1808
             +
Sbjct: 847  ES 848


>gi|241950924|ref|XP_002418184.1| rRNA biogenesis protein, putative [Candida dubliniensis CD36]
 gi|223641523|emb|CAX43484.1| rRNA biogenesis protein, putative [Candida dubliniensis CD36]
          Length = 1715

 Score =  228 bits (582), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/280 (40%), Positives = 177/280 (63%), Gaps = 13/280 (4%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1436 LNTRAPQSTADFERLLIGNPNSSILWMNYMSFQLQLSEVDKAREIGERALKTINYREEQE 1495

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLNIW+A  NLEN +G   +E++   F++++QY D   +H  L+ +Y+ +E+   A +L 
Sbjct: 1496 KLNIWIALLNLENTFG--TDESLEDTFKKSIQYMDSFTMHEKLINIYKMSEKFDQAKQLF 1553

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
             +M KKF      W+     LL Q  Q+ +  ++ +AL  LP+ +HI  + + A LEF+ 
Sbjct: 1554 NRMTKKFGKILNTWVLYGSFLLDQHSQDEMHEILAKALNILPKREHIDLVKKFAQLEFQK 1613

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDL---IRGLFERAISL 1767
            G  ++GRS+FEG++++ PKR DLW++Y+DQEI+         D ++   +  LFER +S 
Sbjct: 1614 GDPEQGRSLFEGLVADAPKRIDLWNVYIDQEIKQDSKNSEEDDTNIKSKVEDLFERVLSK 1673

Query: 1768 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             +  K+ KF F K+L YE+   +E  I  VK KA EYV++
Sbjct: 1674 KITRKQAKFFFNKWLNYEEDKQDENMIARVKSKAAEYVQN 1713



 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 186/688 (27%), Positives = 325/688 (47%), Gaps = 52/688 (7%)

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
           L  IF +G  +   +   ++D K   K++I L++    + + L ++ +    +L   VKS
Sbjct: 179 LLKIFKLGSWLKAKITTSNEDFK--NKKRIELTIEPESVNESLEVDDLIVNNILQCSVKS 236

Query: 118 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVV------RSIDRTRKV 168
           IEDHG IL  G P ++GF+    L  N+ IDV    PGL++   +      R+I+    V
Sbjct: 237 IEDHGIILDTGKPEYSGFISNKELT-NAKIDVTTIVPGLVILCSIATKPSSRTINLKPIV 295

Query: 169 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 228
             +S+   TVS          SID + PG++V   +  + ENG++        GT+ +  
Sbjct: 296 ATISAKKSTVSTIS-------SIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQ 348

Query: 229 LQNTFPTTNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK----- 281
           +QN F     K+ Y     V AR+L V     ++ + L++ P++L      S  +     
Sbjct: 349 IQN-FDLKELKHKYAIGSTVKARVLAVLLKNGTKKLILSILPHVLQLGDDSSQTQALEAF 407

Query: 282 -VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 340
            +G ++D+ KV+  D+       +  +  S+  +  I     ++ + L   Y  GS  + 
Sbjct: 408 PIGHVFDEVKVIGNDKHY-----VYVSFGSSSLFGQIHQSKFDDNKTL-LDYSIGSTHKS 461

Query: 341 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGV 397
           R++GF  ++ L     ++   +       DV  G ++   +++ V  D  G  V+F    
Sbjct: 462 RVIGFNEVDNLLILSFESKVIDAEYLNVRDVPIGKLLPNVEILKVLEDGVGINVKFFDEF 521

Query: 398 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYA 456
           K   P   MS+ ++V P +KF+VG +   R+L    KR  +T +K LV      ILS+  
Sbjct: 522 KGFVPGNQMSDIKLVYPERKFRVGTKTKGRLLNYNGKRALITFRKALVNLEDDEILSNID 581

Query: 457 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 516
           +A     T+  + K   +GC V F+  ++ F P++E+      + SS   VGQ+VK RI+
Sbjct: 582 QAEIGFKTNAIVEKFVPNGCIVSFFGNLRAFLPKTEISETFVEDASSYLKVGQIVKVRIL 641

Query: 517 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYS 570
                 +R+ ++ + + + +S     ++  LVSG  +V  V    T ++V+V  +   + 
Sbjct: 642 DINKEQKRLVVT-LKQSSELSNAQKNEINKLVSGKSIVKTVIVEKTKDSVLVE-LEGSHL 699

Query: 571 KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINS--AQ 625
           +G I    L+D + E    +   +  G    ++L+LD +  +  ++ +AK SLI +  ++
Sbjct: 700 RGVIYDGQLSDGNYEQNRALAKRLTIGESL-EVLILDKDLKARTVIATAKKSLIEALKSK 758

Query: 626 QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
             P D + +  N+VV GYV ++   G FV F GRLTG           + DLSK +Y  Q
Sbjct: 759 SFPVDFNDVTVNAVVKGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNAKEDLSKKFYKYQ 818

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSST 713
           S+   +L V+ E  R  L+L  S  S T
Sbjct: 819 SINCRVLSVDKENERFLLALNNSSSSFT 846


>gi|4454542|gb|AAD20941.1| apoptosis-linked gene 4, deltaC form [Mus musculus]
          Length = 768

 Score =  226 bits (577), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 208/745 (27%), Positives = 353/745 (47%), Gaps = 77/745 (10%)

Query: 332  YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 391
            +K GS  +  I+ +  ++ LA   L+ S        + D+K G VVKG V+A+  FG +V
Sbjct: 18   FKPGSTHKCXIIDYSQMDELALLFLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILV 77

Query: 392  QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 449
            +    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTLV SKL
Sbjct: 78   KVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKL 137

Query: 450  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
              ++ Y  A   L THG I +++ +GC V+FYN +QG  P+ EL      +P ++++ GQ
Sbjct: 138  PFITWYEGAKLGLQTHGVIIRVKDYGCIVKFYNDLQGLVPKHELSNPAIPDPETVFYTGQ 197

Query: 510  VVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL---------VKLGSLVSGVVDVVTPNA 559
            VVK  ++S  P+  R+ LSF ++  +R  +  +         V++G LV   V   T   
Sbjct: 198  VVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTG 257

Query: 560  VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 619
            + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL  K +
Sbjct: 258  LEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPA 316

Query: 620  LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
            L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D      
Sbjct: 317  LVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTP 376

Query: 678  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-S 733
            S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   +    
Sbjct: 377  SEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLM 436

Query: 734  SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESG 792
            S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG  VE G
Sbjct: 437  SNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPG 496

Query: 793  SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 852
               +  +L V   +  V +SL    ++R           K ++ R++S+    HQ    I
Sbjct: 497  QKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KPRKLRKSSR----HQ---GI 538

Query: 853  VEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGR 911
            V+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+       T G 
Sbjct: 539  VQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVT-GL 597

Query: 912  LLLL---------LKAISETETSSSK------------------RAKKKSSYDVGSLVQA 944
            +L +         +    ++ET   K                  ++KK+ S  +G  V  
Sbjct: 598  ILAVEGPVFKRTRMPVQRDSETVDDKGEEKEEEEEEKEEENLTVKSKKRHSLAIGDKVTG 657

Query: 945  EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KS 1000
             I  +K   + +    GF G  H + + DD   V  +  +  K G+ VTAR+I     K+
Sbjct: 658  TIKAVKATHVVVTLADGFVGCFHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKT 716

Query: 1001 NK--PDMKKSF---LWELSIKPSML 1020
            +K  P     F   + ELS++PS L
Sbjct: 717  SKFLPISHPRFVLTILELSVRPSEL 741



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 2/168 (1%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            +  D+    +V+G V  +   G  + +  ++   V   +L+D  +++PEK++  G  V  
Sbjct: 53   RYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKC 112

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            RVL  +P +K++ +TLK +   T+    I       +G    G I RV+ YG  +   N 
Sbjct: 113  RVLLCDPEAKKLIMTLKKT-LVTSKLPFITWYEGAKLGLQTHGVIIRVKDYGCIVKFYN- 170

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            +L GL    ELS   + + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 171  DLQGLVPKHELSNPAIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFR 218



 Score = 47.4 bits (111), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 148/360 (41%), Gaps = 38/360 (10%)

Query: 197 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 256
           G +V   V +I   G+++       G V   HL +     N +  Y+   +V  R+L  D
Sbjct: 60  GTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIM-MKNPEKKYSPGDEVKCRVLLCD 118

Query: 257 PTSRAVGLTLNPYLLHNRAP------------PSHVKVGDIYDQSKVVRVDRGLGLLLDI 304
           P ++ + +TL   L+ ++ P             +H  +  + D   +V+    L  L  +
Sbjct: 119 PEAKKLIMTLKKTLVTSKLPFITWYEGAKLGLQTHGVIIRVKDYGCIVKFYNDLQGL--V 176

Query: 305 PSTPVSTPAYVTISDV-AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 363
           P   +S PA      V    +V K+     E S  R+ +L FR    L+    K    E 
Sbjct: 177 PKHELSNPAIPDPETVFYTGQVVKVAVLSCEPSKERM-LLSFRL---LSDSRPKDPGVES 232

Query: 364 LVFTHSDVKPGMVVKGKVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKP--GKKFKV 420
                  V+ G +V  KV+     G  +   P    A  P PH+S+     P      + 
Sbjct: 233 SQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHNTPAFLPTPHLSDHAANGPLLHHWLQT 292

Query: 421 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILS---------SYAEATDRLITHGWITKI 471
           G  L  RVL      ++ + +  L+  K A++S         S +E    ++  G++  I
Sbjct: 293 GDTL-HRVLC-----LSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCI 346

Query: 472 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531
           +++G FV+F +G+ G +P++ +       PS  +  GQ V  ++ +   + +R+ LS  +
Sbjct: 347 KEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRL 406



 Score = 44.3 bits (103), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 161/392 (41%), Gaps = 45/392 (11%)

Query: 938  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
            +G++V+  +  IKP  + +K G    G +    + D    +++N    +  G  V  R++
Sbjct: 59   IGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD---IMMKNPEKKYSPGDEVKCRVL 115

Query: 998  AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC--DVSIGQRVTGYVYKVDNEWAL 1055
                 P+ KK  +   ++K +++T     SKL F        +G +  G + +V +   +
Sbjct: 116  L--CDPEAKKLIM---TLKKTLVT-----SKLPFITWYEGAKLGLQTHGVIIRVKDYGCI 165

Query: 1056 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1115
            +     L  Q  +         + + +  F+ G+ V   VLS    K+ + L  R   D 
Sbjct: 166  VKFYNDL--QGLVPKHELSNPAIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLLSDS 223

Query: 1116 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELKNICV 1174
                    S+      +  G +V  ++  +     GL V I PH     +    L +   
Sbjct: 224  RPKDPGVESSQKKTGAVRIGQLVDVKV--LEKTKTGLEVAILPHNTPAFLPTPHLSDHAA 281

Query: 1175 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1234
            + PL  +     D L           +VL +S++ R   H+ L  + +L  +S+      
Sbjct: 282  NGPLLHHWLQTGDTLH----------RVLCLSQSER---HILLCRKPAL--VSTVEG--- 323

Query: 1235 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1294
                   G+  + + ++ P M++ G+VK +   G F+     L      + +SD +V +P
Sbjct: 324  -------GQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTP 376

Query: 1295 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
             + F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 377  SEHFVEGQTVVAKVTNVDESKQRMLLSLRLSD 408


>gi|255724334|ref|XP_002547096.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134987|gb|EER34541.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 1722

 Score =  226 bits (576), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/277 (41%), Positives = 174/277 (62%), Gaps = 9/277 (3%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L   AP++  +FERL+  +PNSS +W+ YM+F L ++++EKAR I +RAL+TIN REE E
Sbjct: 1447 LNTRAPQSVSDFERLLIGNPNSSILWMNYMSFQLQLSEIEKAREIGQRALKTINYREEQE 1506

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLNIW+A  NLEN +G   +E +  VF++A+QY D   +H  L+ +Y  +E+   A EL 
Sbjct: 1507 KLNIWIAMLNLENTFG--TDETLEDVFKKAVQYMDAFVIHQKLVNIYIISEKFDQAIELF 1564

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
              M KKF  +   W+     LL Q+  + V  V+ +AL  LP+  HI+ + + A LEF+ 
Sbjct: 1565 KVMTKKFGKNISTWVMYGSFLLDQKLNDEVHEVLSKALSILPKRDHIELVKKFAQLEFQK 1624

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD------LIRGLFERAISLSLPP 1771
            G  ++GRS+FEG++++ PKR DLW+IY+DQEI+    +       +  LFER ++  +  
Sbjct: 1625 GDPEQGRSLFEGLIADAPKRIDLWNIYIDQEIKQDKEEDESSKGKVEELFERVLTKKITR 1684

Query: 1772 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1808
            K+ KF F K+L +E+   +E  I  VK KA EYV++ 
Sbjct: 1685 KQAKFFFNKWLNFEEDKEDESMIARVKAKAAEYVQNN 1721



 Score =  192 bits (488), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 172/672 (25%), Positives = 319/672 (47%), Gaps = 37/672 (5%)

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
           L +IF +G  +   V   ++D K   K++I L++    + + L  + +    +L   VKS
Sbjct: 181 LSSIFKIGSWLKAKVSSSNEDIKT--KKRIQLTVEPEFVNESLETDDLIINNILQCSVKS 238

Query: 118 IEDHGYILHFGLPSFTGFLPRNNLAE-NSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDP 175
           +EDHG IL  G   ++GF+    L+  N  +D +KPGL++   + S    R +    +  
Sbjct: 239 VEDHGIILDTGKSEYSGFISNKELSNANLEVDSIKPGLVILCAISSKVSGRTINLKPTSS 298

Query: 176 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
            ++ K     +   SID +  G++V   +  I +NG++        GT+ +  + N F  
Sbjct: 299 VSIKKGAVTTIS--SIDSIQAGVVVDALINEITDNGLITKVYGLVDGTIALSQIHN-FDI 355

Query: 236 TNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIYD 287
            + K+ Y     V AR+L V     ++ + L++ P++L      +  K      VG ++D
Sbjct: 356 KDLKHKYAIGTNVKARVLAVLSKNGTKKLILSILPHVLQLGNHSAEEKALEAFPVGHVFD 415

Query: 288 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 347
           + KV+  D     +    ST +       I D       K    Y  GS  + R++GF  
Sbjct: 416 KVKVIGNDTNYLYVEFGSSTMIGQVHNSKIDD------DKTLLDYTVGSTHKSRVVGFNA 469

Query: 348 LEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGA--IVQFPGGVKALCPLP 404
           ++ L     ++   E       D+  G ++   +++ V   GA   V+     K   P  
Sbjct: 470 VDNLLILTFESKIIEAKYLKAQDIPIGTLLSNVEILKVLEGGAGINVKVFDDFKGFVPSN 529

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLI 463
            MS+ ++V P +KF+VG+++  R+L +K KRI +T +K+LV      ILS + +A     
Sbjct: 530 QMSDIKLVYPERKFRVGSKVKGRLLDIKGKRIYITLRKSLVNLEDDEILSRFDQAEIGFK 589

Query: 464 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 523
           T+  + K   +GC V+F+  ++ F P++E+        S+   +GQ+VK R++       
Sbjct: 590 TNAIVEKFVPNGCIVKFFGNLRAFLPKTEISETFVDNASNYLKLGQIVKVRVLDINKDEE 649

Query: 524 RINLSFMMKP--TRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
           R+ ++       +   ++++ KL    S+V+ V+   T ++++V  + +   +G +    
Sbjct: 650 RLIVTLKQSSELSNAQKNEISKLESGKSVVNAVIVEKTKDSILVE-LEESNLRGVVADGQ 708

Query: 579 LAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSA--QQLPSDASH 633
           L+D + E    +   +K G +  ++L+LD +  +  ++ +AK SLI +A  +  P+D + 
Sbjct: 709 LSDGNYEQNRSLAKKLKVGEKL-EVLILDKDLKARTVIATAKPSLIEAAKGKSFPTDFND 767

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           I  N VV GY+ ++   G FV F GRLTG           + DL+K +Y  QSV   ++ 
Sbjct: 768 IQINKVVKGYIKSVTNLGLFVTFTGRLTGLVLAKYVTKNGKEDLTKKFYKYQSVTCRVIS 827

Query: 694 VNSETGRITLSL 705
           ++ E  R  L+L
Sbjct: 828 IDQENERFLLTL 839



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 103/228 (45%), Gaps = 7/228 (3%)

Query: 317  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK--ASAFEGLVFTHSDVKPG 374
            I+D  E    KL+  Y++   V  R+L         +  L+  A A + ++ + SD++ G
Sbjct: 1092 ITDALENYSDKLDHVYEQNDYVSARVLDIDEDNKRISVSLRDDAEAADKVINSVSDLERG 1151

Query: 375  MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 434
             V+KG +  + + G  V     + AL  +  +S+  +    K FK    ++ +++  K +
Sbjct: 1152 HVIKGFIKNIANNGVYVSLGRSIHALVRVSDLSDSYLKDWKKFFKPNQMVIGKIVNCKEE 1211

Query: 435  -RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQGFAPRS 491
             R+ +T K++ V  +L ++ S+ + +   I  G +T     G FV+      V G    S
Sbjct: 1212 GRVLMTLKESEVNGELKLMKSFDDLSVGDIFEGTVTSTTDFGVFVKLDGTVNVSGLCHHS 1271

Query: 492  ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
            E+  +       ++  G  VK +I+     S +  LS  MK +  +ED
Sbjct: 1272 EISENDVENVKMLFGDGDRVKVKILK--IDSEKKQLSLGMKASYFAED 1317



 Score = 44.3 bits (103), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 146/356 (41%), Gaps = 44/356 (12%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 153
            L LE V+ G  L  +V +I   G +     PS  G +   +L  +  I  D+      G 
Sbjct: 971  LKLEDVKVGDKLLGFVNNIA-KGLVWVSISPSLKGRVSFLDLTNDGSIFQDIDNKLPIGS 1029

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
             ++  V+ +D   K + L++    V K           D +V G     RV  I  N V+
Sbjct: 1030 AIKVTVKQVDLEHKTLSLTTRDKFVEK----------FDDVVKGETYPARVLKIKPNHVL 1079

Query: 214  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 273
            +        +  I      + +    + Y Q+  V+AR+L +D  ++ + ++     L +
Sbjct: 1080 VELGPDVIASSFITDALENY-SDKLDHVYEQNDYVSARVLDIDEDNKRISVS-----LRD 1133

Query: 274  RAPPSHVKVGDIYDQSKVVRVDRG---LGLLLDIPSTPV------STPAYVTISDVAEEE 324
             A  +   +  + D      ++RG    G + +I +  V      S  A V +SD+++  
Sbjct: 1134 DAEAADKVINSVSD------LERGHVIKGFIKNIANNGVYVSLGRSIHALVRVSDLSDSY 1187

Query: 325  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKV 381
            ++  +K +K    V  +I+  +  EG     LK S   G   L+ +  D+  G + +G V
Sbjct: 1188 LKDWKKFFKPNQMVIGKIVNCKE-EGRVLMTLKESEVNGELKLMKSFDDLSVGDIFEGTV 1246

Query: 382  IAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
             +   FG  V+  G   V  LC    +SE ++      F  G  +  ++L + S++
Sbjct: 1247 TSTTDFGVFVKLDGTVNVSGLCHHSEISENDVENVKMLFGDGDRVKVKILKIDSEK 1302


>gi|388855273|emb|CCF51167.1| related to RRP5-processing of pre-ribosomal RNA [Ustilago hordei]
          Length = 1566

 Score =  225 bits (574), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 116/270 (42%), Positives = 176/270 (65%), Gaps = 4/270 (1%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L   AP +  +FERL+  SPNSSF+WI++M+F L ++DV+KARSIA RAL+ IN REE E
Sbjct: 1282 LASKAPESATDFERLLLGSPNSSFLWIQFMSFALQLSDVDKARSIARRALKVINYREEQE 1341

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            ++N+W+A  NLEN YG+  EE +   F+ A+Q  D   ++L ++ + E + +   A+E+ 
Sbjct: 1342 RMNVWIALLNLENTYGS--EETLESTFKEAVQANDGFTMYLKMVNILEASNKISGAEEMF 1399

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
             K   K+  S + W+   +  L+  Q  + +A++ RA+ +L + +H   I+  AI EFK 
Sbjct: 1400 TKAKGKYSTSPEFWMEYARFYLRTSQPDLSRALLPRAMQALEKREHTYTITAFAINEFKL 1459

Query: 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-GDVDLIRGLFERAISLSLPPKKMKF 1776
            G  +RGR++FEG++  YPKR DLW  Y+DQE RL G+ + +R LFERA++L L  KK K 
Sbjct: 1460 GDPERGRTIFEGLVDSYPKRLDLWWQYIDQESRLEGNQEQVRNLFERAMTLKLTAKKGKS 1519

Query: 1777 LFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            L KK+LEYEK  G+ +  + V  +A E+V+
Sbjct: 1520 LLKKWLEYEKKNGDGKSQQKVIGRAKEFVD 1549



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 151/560 (26%), Positives = 256/560 (45%), Gaps = 53/560 (9%)

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSLETV 105
           L  +FHVGQ +   V+Q+       G+            R++ LSL   L+  G++L  +
Sbjct: 236 LRDLFHVGQWLVASVVQVRGGDVAKGRPTREGGEYEKESRRVELSLAPHLVNTGVTLSDL 295

Query: 106 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE--NSGIDVKPGLLLQ------G 157
             G  L+A + S+EDHGY+L  G+P F GF+P  + A+  +S    K G LLQ       
Sbjct: 296 DAGATLSASISSVEDHGYMLDSGIPEFRGFVPFADAAKLPSSFHARKNGKLLQVGSVVFA 355

Query: 158 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
            +  I   R+    + DP TVS    K +   SI  ++PG +    + + L  G+ +   
Sbjct: 356 KITKIPENRRSFEATFDPKTVSTSPIKHVP--SITSILPGTLTKVLITAALPTGLNVKLF 413

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 264
             F  T+D FHL       + ++ Y +  K  AR+L+  + P S           R  GL
Sbjct: 414 GMFDATIDRFHLPQLPEGKDIQDVYKEGSKHVARVLWDLLAPPSTALQGDNPDHERKFGL 473

Query: 265 TLNPYLLHNRAPPS-------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 317
           +L P +L  +AP +       H        + KVV+     GL++ I +T +    +V I
Sbjct: 474 SLAPQVLALQAPVAKDQQLLQHAYPIGAPLKVKVVQTINDWGLIVSIHNTDLR--GFVHI 531

Query: 318 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 374
           S V+++ V  L      + +G+  + R++G    +      LKAS  E      S+V+ G
Sbjct: 532 SQVSDDHVVSLPPSSGPFAKGTEHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVG 591

Query: 375 MVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
            +V   +I +     I +Q  G V  +    H ++ ++  P K+FK G ++  RV+ V  
Sbjct: 592 EIVNANIIKLGLPNTIFLQLHGHVDGVVFANHFADVKLTHPEKRFKPGLQVKARVMDVDP 651

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
              RI +T KK+LVKS L I++S  +A   ++TH  + +++ +   V  + G++   P  
Sbjct: 652 SRNRIVLTCKKSLVKSDLPIVASMQDARVGVVTHATVFRVQTNSLIVSLFGGLKALVPGR 711

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---DLVKLGSLV 548
           E+  D   +    +  G+VVK RI      ++++  S     +        D V++G  V
Sbjct: 712 EVSEDDFNDVKDSFTEGKVVKMRITEVDYENQKLVGSIKQASSEYLAKLNVDAVEVGEKV 771

Query: 549 SGVVDVVTPNAVVVYVIAKG 568
           +G V  V    VV+ ++  G
Sbjct: 772 TGKVAAVHKEVVVLSLVPSG 791



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 147/668 (22%), Positives = 258/668 (38%), Gaps = 101/668 (15%)

Query: 115  VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP--GLLLQGVVRSIDRTRKVVYLS 172
            V++I D G I+        GF+  + ++++  + + P  G   +G     +   +VV  S
Sbjct: 508  VQTINDWGLIVSIHNTDLRGFVHISQVSDDHVVSLPPSSGPFAKGT----EHKARVVGHS 563

Query: 173  SDPDTVS---KCVTKDLKGISIDLLVPGMMVSTRVQSI-LENGVMLSFLTYFTGTVDIFH 228
                T+    K    + K + +  +  G +V+  +  + L N + L    +  G V   H
Sbjct: 564  PTDRTLQLSLKASVLERKFMRVSEVEVGEIVNANIIKLGLPNTIFLQLHGHVDGVVFANH 623

Query: 229  LQN---TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP--------- 276
              +   T P   +K       +V AR++ VDP+   + LT    L+ +  P         
Sbjct: 624  FADVKLTHPEKRFKPGL----QVKARVMDVDPSRNRIVLTCKKSLVKSDLPIVASMQDAR 679

Query: 277  ---PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 333
                +H  V  +   S +V +  GL              A V   +V+E++   ++  + 
Sbjct: 680  VGVVTHATVFRVQTNSLIVSLFGGL-------------KALVPGREVSEDDFNDVKDSFT 726

Query: 334  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD-VKPGMVVKGKVIAVDSFGAIVQ 392
            EG  V++RI    +      G +K ++ E L   + D V+ G  V GKV AV     ++ 
Sbjct: 727  EGKVVKMRITEVDYENQKLVGSIKQASSEYLAKLNVDAVEVGEKVTGKVAAVHKEVVVLS 786

Query: 393  F-PGGVKALCPLPHMSEFEIVKPG---KKFKVGAELVFRVLGVK--SKRITVTHKKTLVK 446
              P GV+AL  L  ++           +  +   E+   V+ VK  +K I +   K    
Sbjct: 787  LVPSGVRALLSLSVLAAMRGTTSEALLESLEEDHEIEDLVVSVKNPAKGIVIVADKVRSG 846

Query: 447  SKLAILSSYAEATDRLITHGWITK---IEKHG----CFVRFYNGVQGFAPRSELGLDPGC 499
                  ++   AT   +  G + +   IEK+     C V      +     ++L  +   
Sbjct: 847  KSTDHSAANGTATSAQVKQGAVVQGRVIEKNSKYLDCIVALGTATRAKLHITDLSDNYSS 906

Query: 500  EPSSMYHVGQVVKCRIMSSIP----------ASRRINLSFMMKPTRVSEDDLVKLGSLVS 549
            + S++ + GQ V C I+S  P           SR      ++ P   S  DL K G  + 
Sbjct: 907  DSSTLPNPGQSVLCYILSLKPNGKSAVISTRPSRTTGSGGIVDPEISSISDLTK-GQKIR 965

Query: 550  GVVDVVTPNAVVVYVIAKGYSKGTI-----------PTEHLADHLEHATVMKSVIKPGYE 598
            G V  +T   + + +  K  ++  +            T      +   T+M   + PG  
Sbjct: 966  GFVKAITNVGLFITIGRKLDARVQVRELFDEFVRDWKTRFTLGQVVSGTIMD--LNPG-- 1021

Query: 599  FDQLLVLDNESSNLLLSAKYSLINSAQ-----------QLPSDASHIHPNSVVHGYVCNI 647
                   +NE    L S   S+   A+           Q P   +       V G++ NI
Sbjct: 1022 -------NNEVEMSLKSTPGSIKPRAEKVEERAQAMQKQRPKRLTDFKVGDKVKGFIKNI 1074

Query: 648  IETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
            I  G FV+  G  ++G A  ++  DG+  +  K + VG  VR+ +L VN E  +I+  LK
Sbjct: 1075 IGFGVFVQIEGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRVNEEKRKISFGLK 1134

Query: 707  QSCCSSTD 714
             S   + D
Sbjct: 1135 PSYFDAAD 1142



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 18/187 (9%)

Query: 640  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
            + G+V  I   G F+    +L       +  D    D    + +GQ V   I+D+N    
Sbjct: 964  IRGFVKAITNVGLFITIGRKLDARVQVRELFDEFVRDWKTRFTLGQVVSGTIMDLNPGNN 1023

Query: 700  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 759
             + +SLK     ST  S       +EE+   +Q  +      K +  F +G  ++G +  
Sbjct: 1024 EVEMSLK-----STPGSIKPRAEKVEERAQAMQKQRP-----KRLTDFKVGDKVKGFIKN 1073

Query: 760  SNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLS 812
               FGV V   E ++V G    ++L+    +        G  ++A +L V + +R +   
Sbjct: 1074 IIGFGVFVQI-EGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRVNEEKRKISFG 1132

Query: 813  LKTVFID 819
            LK  + D
Sbjct: 1133 LKPSYFD 1139


>gi|321258889|ref|XP_003194165.1| rRNA processing-related protein [Cryptococcus gattii WM276]
 gi|317460636|gb|ADV22378.1| rRNA processing-related protein, putative [Cryptococcus gattii WM276]
          Length = 1486

 Score =  225 bits (573), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/265 (41%), Positives = 173/265 (65%), Gaps = 3/265 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P +  E+ER + +SPNSSF+WI+YM+F L + ++EKAR I  +AL+ I+ REE+EKLN+W
Sbjct: 1208 PSSTAEYERALLASPNSSFLWIQYMSFHLQLHEIEKARKIGRQALEKISYREEDEKLNVW 1267

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            +A  NLE  +G     A  KVF+ A QY D + V++      +   +++  +EL  K++K
Sbjct: 1268 MALINLEIAFGTV--SATEKVFEEAAQYNDKRTVYMRYAEALQVAGKDEALEELFKKIVK 1325

Query: 1664 KFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
            KF    + W R  +  L K   E  +A++ R++ SL R KH++ I + A+LEFK+G  +R
Sbjct: 1326 KFSAYPESWTRFAEFYLNKSDVEAARALLPRSMKSLDRSKHVETIEKMALLEFKHGDTER 1385

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
            G+++FEG++ ++PKR DLW +Y+DQ  ++GD+  +RGL +RA+   L  KK KFLFKK+L
Sbjct: 1386 GKTLFEGLVDKFPKRLDLWGVYIDQVAKVGDIQGVRGLVDRALEQKLTSKKAKFLFKKWL 1445

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
              E+ +G+    +  K KA E+VE+
Sbjct: 1446 TIEQRIGDVAGQDKAKTKAREWVEA 1470



 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 135/539 (25%), Positives = 253/539 (46%), Gaps = 40/539 (7%)

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRNNLAEN-SGIDVKPGLLLQGV 158
           ++ G  L   V+S ED G+I+  GL      S  GF+ ++ +A+      + PG LL   
Sbjct: 246 LETGYFLVGEVRSEEDKGWIIGVGLNTENGSSVEGFVSKDEVAKFVPAQALIPGQLLPAT 305

Query: 159 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
           + SI    +VV+LS +   +++    ++   ++  +VPG  V+  + +++ +G+ +    
Sbjct: 306 ISSIAAGGRVVHLSLNQQDIARSQISEVS--TVGSIVPGHSVNALITAVVPSGLNVKVAG 363

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF----VDPTSRAVGLTLNPYLLHNR 274
           +F GT+D+ HL       + ++ Y   KK+ AR+++     +P S A  L+  P++L+  
Sbjct: 364 FFDGTIDLAHL--PLGDDDIEDKYKIGKKIRARVIYDNLAANPHSFA--LSALPHVLNLT 419

Query: 275 APPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 325
           +P            + +G +Y  +KV RV    G+++    T      +V IS +A+E +
Sbjct: 420 SPTQEGDDTPLELAIPIGKVYQSAKVTRVLNDWGVMV---RTQDGLEGFVHISHLADERI 476

Query: 326 RKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
             L     ++K G+  R R++G   ++G+     + S    L    S++K G  ++G + 
Sbjct: 477 PVLSNATPQFKVGTLHRARVIGHSPMDGVLLLSFEQSVLSQLFMQVSELKIGQQLRGTIR 536

Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTH 440
            +      V   G V  +    H ++  +  P K+FK  A +  RVL ++    R+ +T 
Sbjct: 537 RLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEASVKARVLYLEPARNRVVLTL 596

Query: 441 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
           KKT ++S LA+  S+ +     +T G + KI   G  V  + G++ F P SE       +
Sbjct: 597 KKTFLESDLAVPQSFEDLKVGEVTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTHIKD 656

Query: 501 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPN 558
            S  ++VG+ +  R+++  P++ RI +S              KL  G  VSG V  V   
Sbjct: 657 LSEAFYVGKPLTVRVITLDPSTSRIVVSVKQAAPTAPATAAEKLEVGEAVSGTVSQVHTE 716

Query: 559 AVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD-NESSNLLL 614
            VVV +   G     +   +L++   H  +  ++  +K G + D L+V+  N  S L++
Sbjct: 717 QVVVKLEGSGLI-ALLSLSNLSNQ-RHTGIEELRRSLKQGEKIDDLVVVSKNPVSGLII 773



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 18/243 (7%)

Query: 475 GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531
           G  VR  +G++GF   S L    +      +  + VG + + R++   P    + LSF  
Sbjct: 453 GVMVRTQDGLEGFVHISHLADERIPVLSNATPQFKVGTLHRARVIGHSPMDGVLLLSFEQ 512

Query: 532 KP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEH 585
                   +VSE   +K+G  + G +  +T    +++V   G   G +   H AD  L+H
Sbjct: 513 SVLSQLFMQVSE---LKIGQQLRGTIRRLTDK--MLFVNVHGNVDGIVHPTHYADIRLKH 567

Query: 586 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 644
               +   KP      ++L L+   + ++L+ K + + S   +P     +    V  G V
Sbjct: 568 P---QKRFKPEASVKARVLYLEPARNRVVLTLKKTFLESDLAVPQSFEDLKVGEVTLGSV 624

Query: 645 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
             I++ G  V     L  F P S+       DLS+ +YVG+ +   ++ ++  T RI +S
Sbjct: 625 LKIVDKGVIVELFAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITLDPSTSRIVVS 684

Query: 705 LKQ 707
           +KQ
Sbjct: 685 VKQ 687



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 99/206 (48%), Gaps = 11/206 (5%)

Query: 160  RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 219
            R+ID + ++  +    D V + +       ++D L  G  V   V++I  +GV +S    
Sbjct: 873  RAIDLSTRLSRVEGKEDVVDREIN------TVDDLKQGETVRGLVKNIAGHGVFVSLGRN 926

Query: 220  FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH 279
             T  + I  L + +   +W++ +  ++ V+ +IL ++P S ++ +TL      +    + 
Sbjct: 927  VTARIMIKELFDEY-VKDWESRFEINQLVSGKILSINPKSNSIEMTLRKNPSKSAKKTAL 985

Query: 280  VKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEG 335
            + + D  +  KVV V R     G+ L I  + VS   + + ++D  + +V +  K ++EG
Sbjct: 986  LSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEVTDNRKADVAQALKGFREG 1045

Query: 336  SCVRVRILGFRHLEGLATGILKASAF 361
              V+ +I+     +G  +  +KAS F
Sbjct: 1046 DQVKAKIVSIDTEKGKISFGIKASYF 1071



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 108/514 (21%), Positives = 216/514 (42%), Gaps = 63/514 (12%)

Query: 242  YNQHKKVNARILFVDPTSRAVGLTLNPYLLHN--RAPPS--HVKVGDIYDQSKVVRVDRG 297
            +     V AR+L+++P    V LTL    L +    P S   +KVG++   S +  VD+G
Sbjct: 572  FKPEASVKARVLYLEPARNRVVLTLKKTFLESDLAVPQSFEDLKVGEVTLGSVLKIVDKG 631

Query: 298  LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 357
            +     I        A++  S+ ++  ++ L + +  G  + VR++            +K
Sbjct: 632  V-----IVELFAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITLDPSTSRIVVSVK 686

Query: 358  ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEF------E 410
             +A          ++ G  V G V  V +   +V+  G G+ AL  L ++S        E
Sbjct: 687  QAAPTAPATAAEKLEVGEAVSGTVSQVHTEQVVVKLEGSGLIALLSLSNLSNQRHTGIEE 746

Query: 411  IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI---------LSSYAEATDR 461
            + +  K+ +   +LV       S  I V  KKT+   K            +S+  +A D 
Sbjct: 747  LRRSLKQGEKIDDLVVVSKNPVSGLIIVNIKKTIAAKKEKEKKEDKAPSGISANVKAIDA 806

Query: 462  L----ITHGWITKIEKHGCFVRFYNGVQGFA----PRSELGLDPGCEPSSMYHVGQVVKC 513
            +    I  G + +    G  ++  N ++G         +L +  G  P S   +G+ V C
Sbjct: 807  IEVGQIVTGTVQEQTPQGYMIQLPNNLRGRVHPCDSSDDLVVAAGRGPLS---IGEEVTC 863

Query: 514  RIMSSIPASRRINLSFMMKPTRVSED---------DLVKLGSLVSGVVDVVTPNAVVVYV 564
             +++   + R I+LS  +      ED         D +K G  V G+V  +  + V V  
Sbjct: 864  YVLAVNKSKRAIDLSTRLSRVEGKEDVVDREINTVDDLKQGETVRGLVKNIAGHGVFVS- 922

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYS 619
            + +  +   +  E   ++++         +  +E +QL     L ++ +S+++ ++ + +
Sbjct: 923  LGRNVTARIMIKELFDEYVKD-------WESRFEINQLVSGKILSINPKSNSIEMTLRKN 975

Query: 620  LINSAQQLP-SDASHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADL 677
               SA++      S       V   V  +   G F++  G  ++G   +S+  D ++AD+
Sbjct: 976  PSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEVTDNRKADV 1035

Query: 678  S---KTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            +   K +  G  V++ I+ +++E G+I+  +K S
Sbjct: 1036 AQALKGFREGDQVKAKIVSIDTEKGKISFGIKAS 1069


>gi|405120627|gb|AFR95397.1| ribosomal RNA processing protein RRP5 [Cryptococcus neoformans var.
            grubii H99]
          Length = 1483

 Score =  223 bits (568), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 109/265 (41%), Positives = 171/265 (64%), Gaps = 3/265 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P +  E+ER + +SPNSSF+WI+YM+F L + ++EKAR I  +AL+ I+ REE EKLN+W
Sbjct: 1205 PSSTAEYERALLASPNSSFLWIQYMSFHLQLHEIEKARRIGRQALEKISYREEEEKLNVW 1264

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            +A  NLE  +G     A  KVF+ A QY D + V++      +   + +  +EL  K++K
Sbjct: 1265 MALINLEIAFGTV--SATEKVFEEAAQYNDKRTVYMRYAEALQVAGKGEALEELFKKIVK 1322

Query: 1664 KFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
            KF    + W R  +  L K   E  +A++ R++ SL + KH++ I + A+LEFK+G A+R
Sbjct: 1323 KFSAYPESWTRFAEFYLNKGDVEAARALLPRSMKSLDKSKHVETIEKMALLEFKHGDAER 1382

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
            G+++FEG++  +PKR DLW +Y+DQ  ++GD+  +RGL +RA+   L  KK KFLFKK+L
Sbjct: 1383 GKTLFEGLVDRFPKRLDLWGVYIDQVAKVGDIQGVRGLMDRALEQKLTSKKAKFLFKKWL 1442

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
              E+ +G+    +  K +A E+VE+
Sbjct: 1443 TIEQRIGDAAGQDKAKARAREWVEA 1467



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 149/598 (24%), Positives = 274/598 (45%), Gaps = 52/598 (8%)

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKE--------IGKRKIWLSLRLSLLYKGLSLETVQE-- 107
           L  +F  GQ V   VL L     +            K+   + L+L+ K ++ E  ++  
Sbjct: 188 LAQLFVAGQYVPAKVLTLYPTASQSFISQYPVTETTKLASRVELTLIPKKVNSEVAKKDL 247

Query: 108 --GMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVV 159
             G  L   VKS ED G+I+  GL      S  GF+ ++ +A++     + PG LL   +
Sbjct: 248 ETGYYLVGEVKSEEDKGWIVGVGLDAQDGSSVEGFVSKDEVAKSVPAQALVPGQLLSATI 307

Query: 160 RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 219
            SI    +VV+LS D   +++    ++   ++  ++PG  V+  + +++ +G+ +    +
Sbjct: 308 SSIAAGGRVVHLSLDQQDIARSQISEVS--TVGSILPGHSVNALITAVVPSGLNVKVAGF 365

Query: 220 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF----VDPTSRAVGLTLNPYLLHNRA 275
           F GT+D+ HL       + ++ Y   KK+ AR+++     +P S A  L+  P++L+  +
Sbjct: 366 FDGTIDLAHL--PLGEIDIEDKYKIGKKIRARVIYDNLAANPHSFA--LSALPHVLNFTS 421

Query: 276 PPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 326
           P            + +G +Y   KV RV    G+++    T      +V IS +A+E + 
Sbjct: 422 PIQKGDDTPLELAIPIGKVYQSVKVTRVLNDWGVVV---RTQDGLEGFVHISHLADERIP 478

Query: 327 KLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 383
            L     ++K G+  R R++G   ++G+     + S    L    S++K G  +KG +  
Sbjct: 479 VLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQSVLSQLFMQVSELKIGQQLKGTIRR 538

Query: 384 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHK 441
           +      V   G V  +    H ++  +  P K+FK  A +  RVL ++    R+ +T K
Sbjct: 539 LTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEASVKARVLYLEPTRNRVVLTLK 598

Query: 442 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           KT ++S LA+   + +     +T G + KI   G  V  + G++ F P SE       + 
Sbjct: 599 KTFLESDLAVPQGFDDLKVGELTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTHIKDL 658

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNA 559
           S  ++VG+ +  R+++  P++ RI +S              KL  G  VSG V  V    
Sbjct: 659 SEAFYVGKPLTVRVITVDPSASRIVVSAKQASPTAPATAAEKLEVGEAVSGTVSQVHTEQ 718

Query: 560 VVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD-NESSNLLL 614
           VVV +   G +   +   +L++   H  +  ++  +K G + D L+V+  N  S L++
Sbjct: 719 VVVKLDGNGLT-ALLSLSNLSNQ-RHTGIEELRGSLKEGEKIDDLVVVSKNPVSGLII 774



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 18/243 (7%)

Query: 475 GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531
           G  VR  +G++GF   S L    +      +  +  G + + R++   P    + LSF  
Sbjct: 454 GVVVRTQDGLEGFVHISHLADERIPVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQ 513

Query: 532 KP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEH 585
                   +VSE   +K+G  + G +  +T    +++V   G   G +   H AD  L+H
Sbjct: 514 SVLSQLFMQVSE---LKIGQQLKGTIRRLTDK--MLFVNVHGNVDGIVHPTHYADIRLKH 568

Query: 586 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 644
               +   KP      ++L L+   + ++L+ K + + S   +P     +    +  G V
Sbjct: 569 P---QKRFKPEASVKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFDDLKVGELTLGSV 625

Query: 645 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
             I++ G  V     L  F P S+       DLS+ +YVG+ +   ++ V+    RI +S
Sbjct: 626 LKIVDKGVIVELFAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITVDPSASRIVVS 685

Query: 705 LKQ 707
            KQ
Sbjct: 686 AKQ 688



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 131/272 (48%), Gaps = 14/272 (5%)

Query: 101  SLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGIDVKPGLLLQG-- 157
            +++ ++ G ++T  V+     GY++   LP+   G +   + +++  +    G L  G  
Sbjct: 804  AIDAIEVGQIITGTVQEQNSQGYMVQ--LPNNLRGRVHSCDSSDDLALAAGRGPLTVGEE 861

Query: 158  ---VVRSIDRTRKVVYLSSDPDTV-SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
                V +++R+++ + LS+    V  K    D +  ++D L  G  V   V++I  +GV 
Sbjct: 862  VKCYVLAVNRSKRAIDLSTRLSRVEGKENVVDREVNTVDDLKQGESVRGLVKNIAGHGVF 921

Query: 214  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 273
            +S     T  + I  L + +   +W++ +  ++ V+ +IL ++P S ++ +TL      +
Sbjct: 922  VSLGRNVTARIMIKELFDEY-VKDWESRFEINQLVSGKILSINPRSNSIEMTLRKNPSKS 980

Query: 274  RAPPSHVKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLE 329
                + + + D  +  KVV V R     G+ L I  + VS   + + ++D  + +V +  
Sbjct: 981  AKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEVTDNRKADVAQAL 1040

Query: 330  KKYKEGSCVRVRILGFRHLEGLATGILKASAF 361
            K ++EG  V+ +I+     +G  +  +KAS F
Sbjct: 1041 KGFREGDQVKAKIVSIDTEKGKISFGIKASYF 1072


>gi|403353839|gb|EJY76463.1| S1 RNA binding domain containing protein [Oxytricha trifallax]
          Length = 2023

 Score =  223 bits (568), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 115/321 (35%), Positives = 201/321 (62%), Gaps = 25/321 (7%)

Query: 1512 DEKNNRHAKK--KEKEEREQEIRAAEERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYM 1568
            D K  +  K+  K++ + EQEIR  E+ L + K+ P+T +++ERL+  + + S+VWI+YM
Sbjct: 1689 DNKKKQSGKQSLKQRVKEEQEIRKKEKSLKDNKEQPKTIEDYERLIVQNKDQSYVWIQYM 1748

Query: 1569 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1628
            AFM+    +E AR + ERA+++++I  E +K N+W+AY NLEN +G   +E + KV +RA
Sbjct: 1749 AFMIDKLGLESARKVVERAVKSVSISNEEDKFNLWIAYMNLENNFG--TQETLEKVIKRA 1806

Query: 1629 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ-----RLLKQQ 1683
            L+  D K+++L L+ +Y+ +++ +  +E+   + KK+  S K+W   ++     R LK+ 
Sbjct: 1807 LEVNDRKRIYLQLISIYQASQKYQYIEEIYKSLCKKYNTSLKIWSAYLEFLFTMRDLKKD 1866

Query: 1684 QEGV----------QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE 1733
            +             + V+QRAL SLP+ +H+  IS+   LEFK+G  + GR+M EGI++ 
Sbjct: 1867 KSNFLVKEVTVAEPKQVLQRALQSLPKDEHVNIISKYGQLEFKHGQPESGRTMLEGIVTN 1926

Query: 1734 YPKRTDLWSIYLDQEIRLG--DVDLIRGLFERAIS---LSLPPKKMKFLFKKYLEYEKSV 1788
            YPKR D+W+IY+D E +    +    R LFER ++   +   PKKMK +F+KY+E+E + 
Sbjct: 1927 YPKRMDIWAIYMDMESKYSGENKQQARHLFERCLTNEQILKKPKKMKLVFQKYMEFEMNH 1986

Query: 1789 GEEERIEYVKQKAMEYVESTL 1809
            G ++ +E ++++  +Y+E+  
Sbjct: 1987 GNKKNVEKLRERVEQYLENAF 2007



 Score =  129 bits (324), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 133/510 (26%), Positives = 227/510 (44%), Gaps = 71/510 (13%)

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEI---GKR--KIWLSLRLSLLYKGLSLETVQEGMVLT 112
           L   F +GQ +   VL     K      G R  K+ L++++  L K LS E +   M+L 
Sbjct: 174 LADKFKIGQFIIASVLSAGTSKYNTETSGNRNKKLQLTIQIDHLNKSLSAENLAPNMLLQ 233

Query: 113 AYVKSIEDHGYILHFGLPSFT-GFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV-- 169
             V+S E  G++++FGL   T GFLP  N  ++  I    G L+Q +++++  + KV   
Sbjct: 234 GLVESKEAKGHLINFGLKDKTKGFLPFTNDTQHLQI----GSLVQVLIKTVLASSKVAKC 289

Query: 170 -YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 228
            +++   +   + +  ++K I+I  L PG MV+++V  IL+NG+ L+FL  F GT+   H
Sbjct: 290 EFINQSVEEYHQYM--NVKDITIHNLKPGFMVNSKVSKILDNGIELTFLGGFKGTIFTDH 347

Query: 229 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-------LHNRAPPSHVK 281
           L  + PT      Y   +K+ AR++ VDP ++ V ++L P++       ++N    S V 
Sbjct: 348 LDKSDPTK-----YKIGEKIGARVIAVDPQAQNVQMSLLPHIKQMNDKVVYNTMKQSGVH 402

Query: 282 VGDIYDQSKV----------VRVDRGLGLLLDIPST---------------PVSTPAYVT 316
           VG I +++ V          V+  +     L    T               P  +     
Sbjct: 403 VGQIIEKATVEKELYGGSYKVKFGKDQIAFLHKSHTKEDVVPEEEEEEEEIPTQSKDKKQ 462

Query: 317 ISDVAEEEV---RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 373
                 +E+   +KLEK         VR+    + +GL    +K         T+ D+K 
Sbjct: 463 KVAKKSDELEVGQKLEK---------VRVKEINYFDGLPILSIKEDILNSATLTYEDLKC 513

Query: 374 GMVVKGKVIAV--DSFGAIVQFPGGVKALCPLPHMSEFEI-VKPGKKFKVGAELVFRVLG 430
           G  +   V  V  D     +Q    VK    L HM++F + V P K   +G  L  RV  
Sbjct: 514 GDYISTMVTEVNEDKKFVTLQVNDFVKGRLYLEHMADFPMKVIPPKYKDLGKTLKMRVFN 573

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V  K++ +  T K TL+K+K+ +  SY E       +G I    ++G  V+ + G++G  
Sbjct: 574 VDKKTRTLDFTRKDTLLKAKVPVYQSYREVEKGSKLYGVIVGENEYGYVVKSFGGIKGLL 633

Query: 489 PRSELGLDPGCEPS--SMYHVGQVVKCRIM 516
             +++  +        S    G +VK  ++
Sbjct: 634 TFADIKANSKGSKKDFSSLKFGSIVKAYVL 663



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 179/407 (43%), Gaps = 49/407 (12%)

Query: 613  LLSAKYSLINSAQQLP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
            ++S++Y LI     +P   +D S    N +  G V    ++G  V+FL  L         
Sbjct: 807  IISSQYDLIQLKDSIPRKNADISTDAINRIFTGVVSESNKSGVMVKFLDGLKKLVIIKDL 866

Query: 670  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 729
               Q  + S+ Y  G+ VR  +  +N       L LK +     D + +Q+    ++++ 
Sbjct: 867  ETVQ--NFSEIYKPGKVVRVALNKLNR------LCLKNNVIYLNDQTLIQK----DKELQ 914

Query: 730  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-THHQLAGAT 788
            +        ++LK  E   IG  I+G++    D+G++VS E++  + GF+ + HQ++G T
Sbjct: 915  IRSFYSEIETQLKAHE-IKIGDKIQGEISLVKDYGLIVSVEKYEGLTGFVLSEHQVSGRT 973

Query: 789  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 848
             + G  I   ++D+   + ++DLS      ++  E   ++ ++  K         G +Q 
Sbjct: 974  HKEGQKITCIVMDIDFEKEIIDLS------EKLAENTKSKDSKIAK---------GSNQK 1018

Query: 849  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ--KFPQKQFLNGQSVIATVMALPSS 906
            V  IVE+ KE+YL++S        G      YN    + P ++F  G  +   ++     
Sbjct: 1019 V--IVELNKEDYLIVSFKNNKSQFGLLMAQTYNNDHSENPNEKFTIGDELDVQIV---DQ 1073

Query: 907  STAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP---LELRLKFGIGFH 963
            +  G  L +   ++ +++    +     S   G LV A+I   K         +      
Sbjct: 1074 TETGFFLTIPVIVAPSKSQDKNKQVSTVSLAQGVLVNAQIKSKKHDCIYLQIQQQSQLSI 1133

Query: 964  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1010
            GR+H  E   D      N F NF++G+TV A+++  S   D KK+F+
Sbjct: 1134 GRLHRIECQTD------NEFKNFQVGETVQAKVLKISQGAD-KKTFI 1173



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--K 1316
            GYV N++  GCFI +  +   +  L+ L+D      ++  P+G+LV  RV+ V+  +  K
Sbjct: 1412 GYVTNISKSGCFIQVGYQSTVRSGLNELNDDSSFDFQENMPLGRLVLCRVVKVDESNGQK 1471

Query: 1317 RVEVTLKTS 1325
            R  VTL+ S
Sbjct: 1472 RFNVTLRRS 1480


>gi|443686492|gb|ELT89750.1| hypothetical protein CAPTEDRAFT_150563 [Capitella teleta]
          Length = 272

 Score =  223 bits (567), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/265 (46%), Positives = 181/265 (68%), Gaps = 3/265 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P++  EF+RL+  SP+SS VW+ YMA+ L  A+++KAR +AERAL TI+ REE EKLN+W
Sbjct: 7    PQSAAEFDRLLMQSPDSSMVWMAYMAYHLETAEIDKARGVAERALSTISFREEREKLNMW 66

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            VAY NLEN YG    E +  V +RAL Y D KKV+  L  +Y ++E+ + A+E+   ++K
Sbjct: 67   VAYLNLENLYGTT--EQLKAVIERALTYNDHKKVYQQLAKIYVKSEKIQAAEEVHNTLLK 124

Query: 1664 KFKHSCKVWLRR-VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
            K+K    VW+   +     QQ E  ++++QR+  SL +  H   I + A +EFK G  ++
Sbjct: 125  KYKAEADVWVDFGLFYYNTQQAESARSLLQRSFKSLDKKIHTDVILKFAQMEFKYGDVEK 184

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
            G++M EG+LS +PKRTDLW+IY+D  +++ D+D  R + +RAI L L  KKMKF+FKKYL
Sbjct: 185  GKTMMEGLLSSFPKRTDLWAIYVDLLVKMQDIDCARQILDRAIHLELNIKKMKFMFKKYL 244

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVES 1807
             +E+  G E+ ++ VK+KAME++ES
Sbjct: 245  SFEEKHGNEQTVKAVKEKAMEFIES 269


>gi|71004318|ref|XP_756825.1| hypothetical protein UM00678.1 [Ustilago maydis 521]
 gi|46095627|gb|EAK80860.1| hypothetical protein UM00678.1 [Ustilago maydis 521]
          Length = 1563

 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 116/279 (41%), Positives = 176/279 (63%), Gaps = 7/279 (2%)

Query: 1533 AAEERL---LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            A EE L   L   AP +  ++ERL+  SPNSSF+WI++M+F L ++DV++AR IA RAL+
Sbjct: 1268 ALEEDLTADLASKAPESATDYERLLLGSPNSSFLWIQFMSFALQLSDVDRAREIARRALK 1327

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
             IN REE E++N+W+A  NLEN YG+  +E +   F+ A+Q  D   ++L ++ ++E + 
Sbjct: 1328 VINYREEQERMNVWIALLNLENTYGS--DETLDSTFKEAVQANDGFSMYLKMINIFETSS 1385

Query: 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFIS 1708
            + + A EL  K   K+    + W+   +  L+  Q +  +A++ RA+ +L + +H   I+
Sbjct: 1386 KTEEAQELFVKAKAKYSVLPEFWIEYARFYLRTDQADAARALLPRAMQALDKREHTSTIT 1445

Query: 1709 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-IRGLFERAISL 1767
              AI EFK G A+RGR++FEG++  YPKR DLW  YLDQE RL D    +R LFER ++L
Sbjct: 1446 AFAINEFKLGDAERGRTIFEGLVDSYPKRLDLWWQYLDQESRLQDNQAQVRNLFERTMTL 1505

Query: 1768 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
             L  KK K L KK+LEYEK  G+ +  + V  +A  +V+
Sbjct: 1506 KLTAKKGKSLLKKWLEYEKKNGDVKSQQKVLARAKAFVD 1544



 Score =  143 bits (361), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 147/564 (26%), Positives = 256/564 (45%), Gaps = 61/564 (10%)

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSLETV 105
           L  +FHVGQ +   V+Q+       G+            R++ LSL   L+  G+S+  +
Sbjct: 232 LSELFHVGQWLVASVVQVHSGDVAKGRPTREGGEYEKESRRVELSLSPHLVNTGVSISDL 291

Query: 106 QEGMVLTAYVKSIEDHGYILHFGLPSFTGF--------LPRNNLAENSGIDVKPGLLLQG 157
             G  L+A + S+EDHGY+L  G+P F GF        LP +  A  +G  ++ G ++  
Sbjct: 292 DVGASLSATISSVEDHGYMLDSGIPEFRGFVGFSDVARLPASFHAGKNGKSLEVGSVVFA 351

Query: 158 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
            +  I  +++    + DP TVS    K     SI  ++PG +    V + L  G+ +   
Sbjct: 352 KITKIPESKRSFEATLDPKTVSTSPIKHTP--SITAILPGTLTKVLVTAALPTGLNVKLF 409

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 264
             F  T+D FHL       +  + Y +  K  AR+L+  + P S           R +GL
Sbjct: 410 GMFDATIDRFHLPELPQGKDISDVYKEGSKHVARVLWDLLSPPSTALQSDIPEHERKLGL 469

Query: 265 TLNPYLLHNRAPPSHVK--------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT 316
           +L P +L   AP +  +        +G I  +  VV+     GL++ +  T +    +V 
Sbjct: 470 SLAPQVLALEAPVAKDQQLLQHAYPIGAIL-KVTVVQTINDWGLVVSVHDTDLR--GFVH 526

Query: 317 ISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 373
           IS V+++ V  L      + + +  + R++G    +      LKAS  E      S+V+ 
Sbjct: 527 ISQVSDDHVVSLPPSSGPFAKETVHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEV 586

Query: 374 GMVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV- 431
           G VV   +I +    AI +Q  G V  +    H ++ ++ +P K++K G  +  RV+ V 
Sbjct: 587 GEVVTANIIKLGLPNAIFLQLQGHVDGVVFSNHFADVKLTQPEKRYKPGLSVKARVMDVD 646

Query: 432 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
               RI +T KK+LVKS L I++S  +A   ++T+  + +++ +   V  + G++   P 
Sbjct: 647 PNRNRIVLTLKKSLVKSDLPIVASMQDARIGVVTNATVFRVQTNSLIVSLFGGLKALVPG 706

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKL 544
            E+  +   +  S +  G+V+K RI         +  S +  L   +    V   D V++
Sbjct: 707 REVSENDFNDVKSSFTEGKVIKIRITEVDYENQKVVGSIKQTLPEYLAKLNV---DAVEV 763

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKG 568
           G  V+G V  V    VV+ ++  G
Sbjct: 764 GDKVTGKVAAVHKEVVVLTLVPTG 787



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 145/676 (21%), Positives = 268/676 (39%), Gaps = 61/676 (9%)

Query: 182  VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL-TYFTGTVDIF-----HLQNTFPT 235
            V KD + +     +  ++  T VQ+I + G+++S   T   G V I      H+ +  P+
Sbjct: 482  VAKDQQLLQHAYPIGAILKVTVVQTINDWGLVVSVHDTDLRGFVHISQVSDDHVVSLPPS 541

Query: 236  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 295
            +        HK   AR++   PT R + L+L   +L  +              + ++++ 
Sbjct: 542  SGPFAKETVHK---ARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVGEVVTANIIKLG 598

Query: 296  RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 355
                + L +          V  +  A+ ++ + EK+YK G  V+ R++            
Sbjct: 599  LPNAIFLQLQG---HVDGVVFSNHFADVKLTQPEKRYKPGLSVKARVMDVDPNRNRIVLT 655

Query: 356  LKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 412
            LK S  +    +V +  D + G+V    V  V +   IV   GG+KAL P   +SE +  
Sbjct: 656  LKKSLVKSDLPIVASMQDARIGVVTNATVFRVQTNSLIVSLFGGLKALVPGREVSENDFN 715

Query: 413  KPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 470
                 F  G  +  R+  V  +++++  + K+TL +    +     E  D++   G +  
Sbjct: 716  DVKSSFTEGKVIKIRITEVDYENQKVVGSIKQTLPEYLAKLNVDAVEVGDKVT--GKVAA 773

Query: 471  IEKHGCFVRFY-NGVQGFAPRSELGLDPGCEPS----SMYHVGQVVKCRIMSSIPASRRI 525
            + K    +     GV+     S L             S+    ++    + +  PA   +
Sbjct: 774  VHKEVVVLTLVPTGVRALLSLSVLASMRNTTSQELLESLEEDQEIEDLVVSAKNPAKGIV 833

Query: 526  NLSFMMKPTRVSED--------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
             ++  ++ ++ SED          VK G++V G V +   +  +  V+A G +  T  T 
Sbjct: 834  IVADKVRSSK-SEDVENNGSTSGQVKQGNVVQGRV-IQKNDKYLDCVVALGTA--TRATL 889

Query: 578  HLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLP------SD 630
            H+ D  +  +   S+  PG      +V L +   + ++S + S + ++          S 
Sbjct: 890  HVTDLADDFSRNVSLPSPGQTLQCYIVSLKSNGKSAVISTRPSRVAASDSAEVTDPEISS 949

Query: 631  ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 690
             S +     V G+V  I   G FV    +L       +  D    D    + VGQ V   
Sbjct: 950  ISDLAKGQKVRGFVKAITNVGLFVTVGRKLDARVQVRELFDEFVRDWKTRFTVGQVVSGT 1009

Query: 691  ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG 750
            I+D N     I +SLK     ST  S        EE+ A+L + K      K +  F +G
Sbjct: 1010 IMDTNVHNNEIEMSLK-----STPGSIKPRAERAEER-ALLDAKKRP----KRLADFKVG 1059

Query: 751  SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVA 803
              ++G V     FGV V   E ++V G    ++L+    +        G  ++A +L + 
Sbjct: 1060 DKVKGFVKNIIGFGVFVQI-EGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRIN 1118

Query: 804  KAERLVDLSLKTVFID 819
            + ++ +   LK  + D
Sbjct: 1119 EEKKKISFGLKPSYFD 1134



 Score = 48.1 bits (113), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 624  AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYY 682
            A++ P   +       V G+V NII  G FV+  G  ++G A  ++  DG+  +  K + 
Sbjct: 1046 AKKRPKRLADFKVGDKVKGFVKNIIGFGVFVQIEGTNVSGLAHMNELSDGKADEALKAFR 1105

Query: 683  VGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            VG  VR+ +L +N E  +I+  LK S   + D
Sbjct: 1106 VGDKVRAIVLRINEEKKKISFGLKPSYFDAAD 1137


>gi|221486401|gb|EEE24662.1| programmed cell death protein, putative [Toxoplasma gondii GT1]
          Length = 497

 Score =  220 bits (560), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 116/274 (42%), Positives = 171/274 (62%), Gaps = 14/274 (5%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            PR+P++FERLV  + NS+ VWI YMA+ L + +++ AR IAERA+Q IN REE E+ ++W
Sbjct: 219  PRSPEDFERLVLVNGNSAAVWISYMAYYLKLNELQLARQIAERAVQHINYREEQERSSVW 278

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            +AY NLE  YG+     V  VF+RA+QY D KK+H  +  +YE+  Q   A ++  K  +
Sbjct: 279  IAYLNLECVYGD----RVDDVFRRAIQYNDSKKIHYQMTFIYEKARQLDKARQMCEKCCE 334

Query: 1664 KFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            KF  S K+W+R +  L          + ++ +AL  LPR KHI+F++  A LE+K+   +
Sbjct: 335  KFPESQKMWVRHLTLLYTALDAASAARDLMLQALFRLPRRKHIEFVATCARLEYKHASKE 394

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRL--------GDVDLIRGLFERAISLSLPPKK 1773
            RG++ FE +L+E+PKRTD+WS Y+D  I           ++  IR LFER  SL L  +K
Sbjct: 395  RGQTFFEKLLAEHPKRTDIWSQYVDAHIAAHTPPRCVPANLQSIRVLFERTTSLQLKLRK 454

Query: 1774 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            MKF F ++L++EK  G  E    V+ KA E+V+S
Sbjct: 455  MKFFFTRWLDFEKQHGTAETQARVRAKAREFVQS 488


>gi|328784871|ref|XP_394740.4| PREDICTED: protein RRP5 homolog isoform 1 [Apis mellifera]
          Length = 402

 Score =  220 bits (560), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 108/264 (40%), Positives = 177/264 (67%), Gaps = 3/264 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P + D+F+RLV + PNSS +W++YMA+ L   ++EKAR++A RA++TIN REE+EKLN+W
Sbjct: 134  PNSVDQFDRLVLARPNSSIIWLQYMAYYLQTTEIEKARAVARRAVKTINFREESEKLNVW 193

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
             A+ NLE+++G    E++  VFQ A++  D  K++  +L ++    +    ++ +  +I 
Sbjct: 194  NAWLNLESKFGTS--ESLNDVFQEAVRSNDSLKIYSHMLIVHVEAGRQIELEKTINTIIG 251

Query: 1664 KFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
            KFK   ++W+   + LLK   ++  + ++QRAL SLP  +H+  + + AI+E K G  +R
Sbjct: 252  KFKQIPEIWINCGEALLKIGLKDKSRHIMQRALQSLPASEHVNLMVRFAIMENKFGDKER 311

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
             +++FE ILS YPKR D+WS Y+D  I+  D+D+ R + ER +  +LPP+KMK LFKK++
Sbjct: 312  SQTLFEQILSSYPKRVDIWSCYVDSLIKSNDIDIARRVLERTVIQTLPPRKMKILFKKFI 371

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVE 1806
             +E+  G +E + +V+Q A EYVE
Sbjct: 372  NFEEQYGTQESVNHVQQMAAEYVE 395


>gi|400596283|gb|EJP64059.1| S1 RNA binding domain-containing protein [Beauveria bassiana ARSEF
            2860]
          Length = 1796

 Score =  220 bits (560), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 304/1233 (24%), Positives = 529/1233 (42%), Gaps = 107/1233 (8%)

Query: 60   TIFHVGQLVSCIVLQLDDDK-KEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 118
            TIF +GQ V   V+   +      GKRKI LSLR +    GL+ + V     + A V S+
Sbjct: 201  TIFEIGQFVRAYVVSTTEGAVAGKGKRKIELSLRPTEANTGLTKDDVVPQCTVVAAVASV 260

Query: 119  EDHGYILHFGLPSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDT 177
            EDHG I+  G+   +GFLP   +  N     ++ G +    V +   + KV  L+   D 
Sbjct: 261  EDHGCIMDLGIDGLSGFLPNAEVDTNMKRQRLQEGAVFLCQVTAKKGSGKVAQLTLKQDK 320

Query: 178  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 237
            +        +  +I+  +PG  VS  V     +G+    + +   T D+ H       T+
Sbjct: 321  IGNVKNYPAEATTINTFLPGTAVSVLVTGNSNSGLSGKIMGHVDATADLIHSGIGPFGTD 380

Query: 238  WKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL-----HNRAP-----PSHV-KVGD 284
             ++ Y    K+ ARI+   PT+++  +G+TL P+L      H   P     P  V  +  
Sbjct: 381  VESKYKIGSKIKARIICNFPTAKSPKLGITLLPHLTALTKKHPEGPKRSSLPLQVLPIAS 440

Query: 285  IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVR 341
            I +Q  V   +  +GL +D+    +    +V IS V + +V  L K    Y+ GS  + R
Sbjct: 441  IVEQCTVRHAEADMGLFVDVGVPGLC--GFVHISRVKDGKVDSLYKSSGPYQVGSTHKGR 498

Query: 342  ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGG 396
            I+G+  ++G+     + S        H DV  G V+  ++    I  D   G ++    G
Sbjct: 499  IVGYSEIDGVFHLSFQKSILSQTYIRHEDVPVGTVLTCEIEKLLINEDGVNGLVLNIAEG 558

Query: 397  VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSS 454
            +    P  H+S+ ++  P KKF+ G ++  RVL   +  K I +T KKTLV S+  I+++
Sbjct: 559  ITGFVPERHLSDVKLQHPEKKFRQGMKIKARVLSNDLIKKSIRLTLKKTLVNSETPIITN 618

Query: 455  YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 514
            Y +        G I K+E+ G  ++FY  ++GF P SE+      +PS  + VGQVV   
Sbjct: 619  YDDVKVGSQALGTIIKLERSGARIQFYGELRGFLPISEMSEAYIRDPSEHFRVGQVVSVH 678

Query: 515  IMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 568
            ++   P SRR+ +S      F ++     +   + LG +VS  V   T + V V  +   
Sbjct: 679  VLDVDPESRRLVVSCKDPGAFGLEKQNALKK--LSLGDVVSAKVTQKTEDQVFVE-LEGS 735

Query: 569  YSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESS--NLLLSAKYSLINSA 624
              K  +P  HL D    ++   +K V   G     L+VLD      +++LS K SL+ +A
Sbjct: 736  LLKAILPVGHLTDKSASKNQFALKKV-SAGQTLPNLVVLDKHEGRRSVILSQKPSLVEAA 794

Query: 625  QQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 682
            ++  L          SV  G+V NI  T  FV+F G L    P+++     +A      +
Sbjct: 795  KEGKLLKSFEQAKQGSVFAGFVRNITLTAVFVQFAGSLHALLPKARLAPEAQAKPDFGLH 854

Query: 683  VGQSVRSNILDVNSETGRITLSLKQSCC-SSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 741
               S+   ++    +  RI ++   +           +      + +A    +K   + +
Sbjct: 855  KNDSIEVRVVSTIPDLSRIMVAPSSAPVDQDVAGKSKKAKAAPADDLAFGSITKAKVTSI 914

Query: 742  KWVE--GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAI 799
            K  +    I+   ++G++  SN F          D +  I   +   AT   G  ++  +
Sbjct: 915  KETQLNVQIVDYNVQGRIDISNVF----------DKWDDIADPKHPLATFHKGQELRVRV 964

Query: 800  LDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVHQTVNAIVEIV 856
            + V  AK  R + +S ++       E  + +   +  R +E + D L V Q+  A V  +
Sbjct: 965  VGVHDAKDHRFLPISHRSAH--SILELTARQTDLETDRLKELTVDSLKVGQSHIAFVNNL 1022

Query: 857  KENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMAL-PSSSTAGRLL 913
             + YL ++L P     I     SD  +Q    +  F  G ++   V ++ P +S      
Sbjct: 1023 TQQYLWVNLSPSVRGRISALEASDDLSQLNDLEGNFPAGSALRVRVTSVNPENSH----- 1077

Query: 914  LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 973
            L L A     +SSSK      S     ++  +IT++   ++ +KF     G +H+ ++ D
Sbjct: 1078 LDLSA----RSSSSKDTVTWDSIKANMVLPGKITKVNERQILVKFSESVSGPVHLPDMAD 1133

Query: 974  DKSNVVENLFSNFKIGQTVTARI--IAKSNKPDMKKSFLWELSIKPS--MLTVSEIGSKL 1029
               N  E   + ++ G  +   +  + KSNK          LSI+PS  M +   I  + 
Sbjct: 1134 ---NFDEVNTTQYRKGGIIRVSVVDVDKSNK-------RLRLSIRPSRIMSSTLPIKDQE 1183

Query: 1030 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1089
            +     +S G  V G+V  V ++   + +   + A + I  S      L+E++ +F I +
Sbjct: 1184 ISSFAQLSSGDIVRGFVKNVTDKGLFVLLGGPVSALVKI--SNLSDRYLKEWKDQFQIDQ 1241

Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1149
             V G +++I+   K L + L+     + D+  D +       +  G +V G++ K+    
Sbjct: 1242 MVKGRIIAIDNATKQLEMSLK---SSVVDE--DYTPPVTYKDLAVGQVVTGKVRKVEEFG 1296

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
              ++V    ++ G  H +++    V            D    Y EG  VK  VLE+    
Sbjct: 1297 AFILVDNSANVSGLCHRSQIAEKPVQ-----------DATKLYKEGDAVKAMVLEVDVQK 1345

Query: 1210 RG-TFHVELSLRSSLD-GMSSTNSSDLSTDVDT 1240
            R  +F ++ SL    D  M S N + L    D+
Sbjct: 1346 RKISFGLKPSLFEDEDTDMESDNGAALDGQDDS 1378



 Score =  184 bits (466), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 169/293 (57%), Gaps = 18/293 (6%)

Query: 1530 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            EI   +   L+ + P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR +AERA++
Sbjct: 1489 EIEVDKTAELDTNGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREVAERAIR 1548

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
            TINIREE EKLN+WVAY NLE  YG   +  V +VF+RA QY DP+++H  L  +Y ++ 
Sbjct: 1549 TINIREETEKLNVWVAYLNLEVAYGT--KTTVEEVFKRACQYNDPQEIHERLASIYIQSG 1606

Query: 1650 QNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKF 1706
            + K A+ L   M+KKF   +  VW+     L   +      +A++ RA   L   + +  
Sbjct: 1607 KLKEAEALFEAMVKKFGAKAPSVWMNYAHFLHVTRNDPARARALLPRASQQLGAAQAVTI 1666

Query: 1707 ISQTAILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL---------GDVD 1755
            + + A LEF   NG  +RGR+MF G+L  +PK+ DLW+  LD E+ +          D  
Sbjct: 1667 VPRFAALEFHSPNGEPERGRTMFAGLLDTWPKKGDLWNQLLDLEMGILAGAGGTAAADPT 1726

Query: 1756 LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             +R +FER   +  L P++ +  F+++  +E+ +  + + + V  KA E+  +
Sbjct: 1727 AVRDVFERRTRVKGLKPQQAEKWFRRWTTFEEGIDAKSKAK-VTAKAHEWAAA 1778


>gi|242004044|ref|XP_002422951.1| programmed cell death protein, putative [Pediculus humanus corporis]
 gi|212505867|gb|EEB10213.1| programmed cell death protein, putative [Pediculus humanus corporis]
          Length = 1410

 Score =  219 bits (558), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/282 (41%), Positives = 178/282 (63%), Gaps = 15/282 (5%)

Query: 1528 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1586
            EQ +R  EE+L++ D  P T D+F+R V ++P+SS  W+KYMAF +   ++E AR++A R
Sbjct: 1134 EQRLRYIEEKLMDPDREPETIDDFDRSVLANPDSSATWLKYMAFHIQNTEIEAARTVARR 1193

Query: 1587 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1646
            AL+ I+ R+E EKLNIW+A  NLEN YG   E+++ K+   ALQY DP K+HL +L LY 
Sbjct: 1194 ALKAISFRKEQEKLNIWIALLNLENLYG--CEQSLNKILTEALQYNDPYKIHLHMLNLYG 1251

Query: 1647 RTEQNKLADELLYKMIKKFKHSCKVWLR-RVQRLLKQQQEGVQAVVQRALLSLPRHKHIK 1705
            +T   +  ++L   M+KK+K    +W    +      + E  + V+QRAL  L + +HI 
Sbjct: 1252 QTNNYQEMEKLGNFMLKKYKDVENLWYDVGLAYFTVGKIESARFVLQRALTILNKKQHIL 1311

Query: 1706 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765
             +S+ A LE K G  +R ++++E IL  +PKR D+WS Y+D ++            ERA 
Sbjct: 1312 LLSKFAHLENKYGSPERAQTLYESILGSFPKRVDIWSCYVDIQV-----------LERAT 1360

Query: 1766 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            S SL P+KMK LFKK+L +E++ G  E +E V++ A+EYVE+
Sbjct: 1361 SQSLRPRKMKTLFKKFLTFEENHGTPENVEKVREAAVEYVET 1402



 Score =  122 bits (305), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 138/622 (22%), Positives = 272/622 (43%), Gaps = 39/622 (6%)

Query: 6   ISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNLLPTIF 62
           +  GM L G+V++V++K + + LPG LRG   +   ++    ++ N    +E   L  IF
Sbjct: 62  VQEGMILLGIVSDVSDKIVNVSLPGSLRGVITIPNVSEFYTSLIQNMSSQSEVLGLTEIF 121

Query: 63  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
             G ++   +L + ++ K +      ++    ++   LS + + + ++LT  VKS EDHG
Sbjct: 122 QPGDILPVKILSVSEESKSL-----MVTSDPKMINSNLSYDAIDKDLILTGNVKSKEDHG 176

Query: 123 YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT--RKVVYLSSDPDTVSK 180
           +I+ FG+    GFL  + + E+   ++K G +++  V S  ++     V LS+      K
Sbjct: 177 FIIDFGIDKVLGFLKFDKVKEDG--ELKVGQIIRSSVISCLKSPGSCSVQLSTLKTDFEK 234

Query: 181 CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF--HLQNTFPTTNW 238
              K    +S+  LVPG      V  +L NGV + +         I+  +L   FP    
Sbjct: 235 AYIKLNSSVSLSFLVPGFQFQVVVTKVLLNGVEVKYGNDVNKKGFIYEDNLPMKFPNLEK 294

Query: 239 KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGL 298
            N   ++    A +L+V P    +   + P     +      K GDI    KVV+  R  
Sbjct: 295 VNVGTEYI---ATLLYVKPLVNVLYFKVLP----KKKIEWPFKFGDIV-SGKVVKARRS- 345

Query: 299 GLLLDIPSTPVSTPAYVTISDVAE-----EEVRKLEKKYKEGSCV-RVRILGFRHLEGLA 352
           GL++ I         ++ IS +       E  + +E  Y     + ++R+    +++   
Sbjct: 346 GLVVKIVKGINVARCFIPISKLKNNKKILENDKSIETLYPVNKKIPQIRLGSRNYMKRQY 405

Query: 353 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 412
            G    ++ +   F+ +D+K G ++  K+++   +   ++    +        +++  + 
Sbjct: 406 LGATDKASLQEKYFSVTDLKCGEIISAKILSFSKYSVKLKIGQSILGTVAFNDLTDVPLK 465

Query: 413 KPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
            P  +FKVG ++    +  +SK + +T K +L+K K  ++    E     +  G I+++ 
Sbjct: 466 NPSLRFKVGQQVT--EINPESKFVRLTMKPSLIKEKNILMDLNFEKNHFYL--GVISRVL 521

Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 532
                V+F+NGV G  P+       G    + +  G ++KC  ++    ++ +    +  
Sbjct: 522 HGKLIVKFFNGVIGILPKRFTNHLDGGSLKTYFAEGHLIKCCPINVTSENKLL----LSL 577

Query: 533 PTRVSEDDLVKLGSLVSGVVDVVTPNAVV--VYVIAKGYSKGTIPTEHLADHLEHATVMK 590
            +     DL+K+G   +  V   T N  +  V V  K   +G +P + L+ H    T + 
Sbjct: 578 LSSTEGSDLLKVGKKYNVTVVNKTENGFLLDVQVNKKKTCQGYLPKQLLSVHQNLTTPLL 637

Query: 591 SVIKPGYEFDQLLVLDNESSNL 612
           S   P  +F    V  +E++ L
Sbjct: 638 STYFPNEKFSAYCVFASETNGL 659


>gi|294941146|ref|XP_002783028.1| programmed cell death protein, putative [Perkinsus marinus ATCC
            50983]
 gi|239895225|gb|EER14824.1| programmed cell death protein, putative [Perkinsus marinus ATCC
            50983]
          Length = 1786

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 113/285 (39%), Positives = 174/285 (61%), Gaps = 20/285 (7%)

Query: 1541 KDAPRTPDEFERLVRSS---------PNSSFVWIKYMAFMLSMADVEKARSIAERAL-QT 1590
            K  PR PD+FERLV  S         P++S VWI+YM + + +A++++AR  AER + Q 
Sbjct: 1484 KRNPRGPDDFERLVLMSCSASSTPDMPSASEVWIQYMGYWMQLAEIQRARECAERGIKQR 1543

Query: 1591 INIREENEKLNIWVAYFNLENEY---GNPPEEAVVKV---FQRALQYCDPKKVHLALLGL 1644
            +  R+E ++LN+W+AY NLE      G   ++A+ +V   F+RA  Y D KKVH+A+  +
Sbjct: 1544 LGFRDEQDRLNLWIAYLNLEAHICVEGGRKKDALKRVEDLFKRAASYNDSKKVHMAMCDV 1603

Query: 1645 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHK 1702
            + R     LA E   +  +KF HS KVW++ ++ L    +  E  Q  + RAL    R K
Sbjct: 1604 WARAGAEDLALEAYKRTAEKFGHSKKVWMKYLEFLYSTGKLSEARQNCLPRALRLTDRRK 1663

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG--DVDLIRGL 1760
            H    ++ A LE+K G  +RG+++FE +L+  PKR D+WS+YLD+ I     D D +R +
Sbjct: 1664 HSLIATRAAKLEYKYGTVERGKTIFESLLASQPKRLDIWSVYLDEHINANKEDADQVRSV 1723

Query: 1761 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            F+RA++L L P KMKF FK+++ +E+S G+ + ++ VK KA EYV
Sbjct: 1724 FDRAVTLKLKPAKMKFFFKRWVNFEQSYGDVDHLDLVKDKAREYV 1768



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 195/787 (24%), Positives = 323/787 (41%), Gaps = 117/787 (14%)

Query: 62  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 121
           F  GQLV+  V+  D   +E     I LSL  S+L  GL+ +T++  M L A V + E H
Sbjct: 112 FRRGQLVTAAVIANDGSGRE---GSIQLSLLPSVLNAGLTSKTMKPHMWLPATVLTEEAH 168

Query: 122 GYILHFGLPSFTGFLPRNNL-AENSGIDVKPGL--LLQGVVRSID-------RTRKVVY- 170
           GY+L FG+   TGFL ++ L A    ++   G+  LL+   R  D       R   +VY 
Sbjct: 169 GYVLSFGIDGVTGFLKKSELPAPTDKVETTKGVNPLLEMSARDNDAPEAEQMRLGTLVYV 228

Query: 171 --LSSDPD--TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 226
             L +DP   T  +C  K       D +        +  S    G+ + F+    G V  
Sbjct: 229 RVLDNDPSNKTSLQCSAKAGNVEESDRI----GAPKKKASKKSAGIQVDFMGPLKGVVHQ 284

Query: 227 FHL-------QNTFPTTNWKNDYNQHKKVNARILFV--DPTS--RAVGLTLNPYLLHNRA 275
            HL        +   TTN K      + V AR+L V  DP+S  RAV LTL P L+  + 
Sbjct: 285 HHLLHPILNDTDVTMTTNLK----VGQSVTARVLAVLADPSSHTRAVYLTLLPNLIQWKG 340

Query: 276 PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE- 334
             S V+ G   + ++V+ V             P     +V   ++      +    Y++ 
Sbjct: 341 IKSQVEAGTTIEAARVIDV------------IPKDCTRFVAGGNLMVAHATRCSLPYRQP 388

Query: 335 ---GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA--VDSFGA 389
              G    VR LG   LE       +       V     V  GMV    VI    +  G 
Sbjct: 389 GAVGKKTDVRALGSNLLEMSVQVSAEEKVLAASVVNLQQVSAGMVFDKAVIEHFDNEKGL 448

Query: 390 IVQFPGGVKALCPLPHMSEFEIVK--PGKKFKVGAELVFRVLGVKS--KRITVTHKKTLV 445
           IV     V    P    ++    +  P +  +  AE+  RVL V    +++T+T KK+LV
Sbjct: 449 IVSLSDFVTGRVPKEQCTDQGNQRKLPKRYAEEKAEIRVRVLNVDPVRRQVTLTAKKSLV 508

Query: 446 K------SKLAILSSYAEATDRLITHGWITKIEKH-GCFVRFYNGVQGFAPRSELGLDPG 498
                   +  I ++ A   D ++  G+++KI  H GC V+F+    G  P     +  G
Sbjct: 509 GRPDEEVPRALIRNADASVGDVVV--GYVSKILDHGGCIVKFFGEAFGLLPI----VTEG 562

Query: 499 CEPSSMYHVGQVVKCRIMS--SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS----GVV 552
           C      H G +VK R++S    P   R+ L  +      +  ++ K+G +++       
Sbjct: 563 CA-----HEGALVKVRVVSKNDSPKGTRLRLQQVNSMEDSTMGEITKVGDVLTVETIEGA 617

Query: 553 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMKSVIKP----GYEFDQLLV--L 605
           D  +     V +   G +   +P   LAD  + A  VM+ V K      +   ++LV  +
Sbjct: 618 DKCSGGRQCVKIRCVGGTDVLVPVMQLADDPDMAVAVMERVEKKEDLQHFPLAKVLVTAV 677

Query: 606 DNESS-------NLLLSAKYS--LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
            N+ +        L+   KY   L  S +++P   S +     + G+V N+   G FVR 
Sbjct: 678 MNDGTVEGTCKPVLVEDEKYRELLGISQEEIP---SKVKVGEGLVGFVSNVTTFGAFVR- 733

Query: 657 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DVNSETGRITLSLKQSCCSSTDA 715
           +G +TG  P+ K  +G   ++S+   VGQ+V + ++  V++E     + ++    ++   
Sbjct: 734 VGGVTGLVPKPKLAEGFVEEVSEAVEVGQTVTTAVVSSVDAERNMFKMDMQPRAVAAVSE 793

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII---GSVIEGKVHESNDFGVVVSFEEH 772
              +E      K+ +           KW+    I   G V++ KV +   +G ++   + 
Sbjct: 794 LSAREELRAAAKLRL----------EKWLGSGRIPQRGQVVDAKVGKKKPYGWMLELTKF 843

Query: 773 SDVYGFI 779
               G +
Sbjct: 844 EAAAGLL 850


>gi|330794746|ref|XP_003285438.1| hypothetical protein DICPUDRAFT_29294 [Dictyostelium purpureum]
 gi|325084613|gb|EGC38037.1| hypothetical protein DICPUDRAFT_29294 [Dictyostelium purpureum]
          Length = 812

 Score =  219 bits (557), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 157/568 (27%), Positives = 276/568 (48%), Gaps = 46/568 (8%)

Query: 1   MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLAR---AADALDPILDNEIEANEDNL 57
           ++ ++I  GM + G    V+E D+ I LP GL+G  +    +D+    +   +E  E+N+
Sbjct: 150 LFKKDIHKGMVVLGSFESVSEIDITISLPFGLKGYIKFNEISDSFTEWMKKTLEREEENV 209

Query: 58  LPT--------------IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 103
             T              +F+ GQ++   +    D     G   +  S+R  ++  G S+E
Sbjct: 210 KSTNFRKMKIISDQVRKMFYKGQIIKVAIAGFTDHHTIEG---LHCSMRPEVVNSGSSME 266

Query: 104 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-------AENSGIDVKPGLLLQ 156
           T  E M +   V+SIED GYI+ FG   +TGF+  +N         +    D+  G  ++
Sbjct: 267 TFTENMTIHGAVQSIEDKGYIVSFGSKDYTGFIEFSNTNYYYPGQTDEKQNDLFVGQPIE 326

Query: 157 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 216
            ++ SID+  K   L+     VS+   KD   I++D +  GM+V T+V +++  G+ L F
Sbjct: 327 ALIDSIDKDTKTFKLTLSHSLVSRATVKDSSVITMDSIKAGMLVETKVIAVIGGGLHLGF 386

Query: 217 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL-HNRA 275
           L +F G V++ HL N  P  N+K++ N    V ARI+FVD  ++ +GL+  P+++ +   
Sbjct: 387 LDFFAGDVELLHLNN--PLDNYKDNQN----VKARIIFVDQVNKRIGLSTLPHIMGYKPY 440

Query: 276 PPSHVKVGDIYD-QSKVVRVDRGLGLLLDIPSTPVST-----PAYVTISDVAEEEV--RK 327
           P    K G I+D  S  V     L ++L  PST VS+       YV I ++    V   K
Sbjct: 441 PFGTFKKGQIFDFNSLTVERIEPLEMILACPSTVVSSKPQTIKGYVHIEELESGVVNLNK 500

Query: 328 LEKKYKEGSCV--RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 385
              ++K+G     + RI    +L+G+ T   +    E   F+++D++ GM+  G +  + 
Sbjct: 501 ASNQFKKGEAFNKKCRIKHLDYLDGMVTFTARTRELEKKFFSYNDIECGMITTGIIKYIR 560

Query: 386 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 443
                ++    +  + P  H+++  I      FK+G+ +  RV+ V    KR+ +T KK+
Sbjct: 561 EESVEIELAPSIHGVVPKTHLADVAITNTSTFFKLGSTVKVRVISVDPDKKRLQLTLKKS 620

Query: 444 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 503
           L++S+  I++        LI+HG ITK  ++  FV FYN   G      L L P      
Sbjct: 621 LIQSEYPIITDKNTTPAGLISHGIITKTTRYLVFVSFYNNSFGVVESQNLSLTPIQSVQK 680

Query: 504 MYHVGQVVKCRIMSSIPASRRINLSFMM 531
            + +G+ V  + +SS  +   ++L+ ++
Sbjct: 681 QFPIGRTVLVKSLSSDNSKPGLSLTMII 708



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 157/415 (37%), Gaps = 89/415 (21%)

Query: 1073 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1132
            Y P +  E Q    +G+ +   + SI+K+ K  +L L      +S  TV  S+      I
Sbjct: 307  YYPGQTDEKQNDLFVGQPIEALIDSIDKDTKTFKLTLS--HSLVSRATVKDSSVITMDSI 364

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ------- 1185
              G +V  ++  ++ G  GL +       G V    L N     PL  Y + Q       
Sbjct: 365  KAGMLVETKVIAVIGG--GLHLGFLDFFAGDVELLHLNN-----PLDNYKDNQNVKARII 417

Query: 1186 -FD--------------------PLSGYDEGQFVKCKVLEISR----------------- 1207
              D                    P   + +GQ      L + R                 
Sbjct: 418  FVDQVNKRIGLSTLPHIMGYKPYPFGTFKKGQIFDFNSLTVERIEPLEMILACPSTVVSS 477

Query: 1208 ---TVRGTFHVELSLRS---SLDGMSSTNSSDLSTDVDTPGKHLEKIE------------ 1249
               T++G  H+E  L S   +L+  S+      + +     KHL+ ++            
Sbjct: 478  KPQTIKGYVHIE-ELESGVVNLNKASNQFKKGEAFNKKCRIKHLDYLDGMVTFTARTREL 536

Query: 1250 --------DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
                    D+   MI  G +K +  +   I L+  +   V  ++L+D  + +    F +G
Sbjct: 537  EKKFFSYNDIECGMITTGIIKYIREESVEIELAPSIHGVVPKTHLADVAITNTSTFFKLG 596

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYG 1358
              V  RV+SV+P  KR+++TLK    ++  QSE   I + +    G I  G I +   Y 
Sbjct: 597  STVKVRVISVDPDKKRLQLTLK----KSLIQSEYPIITDKNTTPAGLISHGIITKTTRYL 652

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
            +F++  N N  G+     LS   + +++  +  G  V VK L  D  K  +SL M
Sbjct: 653  VFVSFYN-NSFGVVESQNLSLTPIQSVQKQFPIGRTVLVKSLSSDNSKPGLSLTM 706


>gi|71032245|ref|XP_765764.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352721|gb|EAN33481.1| hypothetical protein TP01_0237 [Theileria parva]
          Length = 382

 Score =  218 bits (555), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 138/377 (36%), Positives = 211/377 (55%), Gaps = 26/377 (6%)

Query: 1450 ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1509
            EN  +AV++       G + +  +I  R      +  L+ + P++ N    N+   D  K
Sbjct: 4    ENPLIAVKNDHKGKNSGRNKMKNKIPDRNKKINKKSQLNGKNPNLSNEKVNNKEEKD-GK 62

Query: 1510 TIDEKN----NRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSF 1562
              ++K+    N +   K + E E +IR  E+R+ +K+  R P+   +FERLV ++  SS 
Sbjct: 63   PRNKKDKKGINLNIDSKLEYENEIKIRELEDRIADKEWMRNPNSVMDFERLVVTNARSSA 122

Query: 1563 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1622
            VWI YMAF ++  D+E AR   +R L+ I+ RE  EK+N+WVAY N+E  YGN     V+
Sbjct: 123  VWIAYMAFYINSGDIEMARKTVKRGLKAIDFREMVEKMNLWVAYLNMECIYGN----NVM 178

Query: 1623 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1682
            ++F +A QY D K +HL ++ ++    Q   A E+  K IKKF  S KVWL  + RLL +
Sbjct: 179  EIFNQATQYNDSKSIHLKMINIFVNNNQLDKAKEICEKAIKKFHKSKKVWLAYL-RLLYE 237

Query: 1683 QQEGVQAVVQ---RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1739
              +  +A  Q     +  +P  K I   S TA+LE+K+G  + G+  FE IL + PKR D
Sbjct: 238  NMKDFEAGRQLHKTCITRIPEKKRINITSSTALLEYKHGSPEMGKMYFENILLDNPKRMD 297

Query: 1740 LWSIYLDQEIRLG----------DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG 1789
            +W+ YL   I+L            +  +R LF+RAI+L L PKKMK +F K+LE+E + G
Sbjct: 298  IWNQYLTAHIKLNMDESKTQKSEGLKNVRNLFDRAITLDLKPKKMKIIFSKWLEFECAYG 357

Query: 1790 EEERIEYVKQKAMEYVE 1806
             E+  E V++KA++YVE
Sbjct: 358  TEKSKESVQKKALKYVE 374


>gi|340386400|ref|XP_003391696.1| PREDICTED: protein RRP5 homolog [Amphimedon queenslandica]
          Length = 267

 Score =  218 bits (555), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/259 (40%), Positives = 177/259 (68%), Gaps = 3/259 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P++ D+F+RL+ ++PNSS +W++YMAF L  A+V+KAR+ AER L  I+ REE+EKLN+W
Sbjct: 7    PQSADDFDRLLVANPNSSSLWLQYMAFYLHTAEVDKARATAERGLAAISFREEDEKLNLW 66

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            V + NLEN YG+   E++ +VF+RALQ  D  +++  L+ ++  + + + AD+L   M K
Sbjct: 67   VGFLNLENMYGDS--ESLDQVFKRALQQNDQFEIYTRLIDIHVTSNKPEYADQLYQIMCK 124

Query: 1664 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
            KF  + +VW +  + L++Q + +  + ++QR+  SL + +HI    Q A  EFK G  +R
Sbjct: 125  KFSSNIQVWSQYGRFLMEQGKADLARKILQRSFKSLTKKQHIDITKQFAQFEFKYGEMER 184

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
            G ++FE ++S YP++ D+WS+Y+D   + G++D +R +FERA+SL L   K +FL+K+Y+
Sbjct: 185  GCTLFENLVSSYPRKVDIWSVYIDMLTKKGEMDRVRDVFERAVSLKLSSVKKQFLYKRYI 244

Query: 1783 EYEKSVGEEERIEYVKQKA 1801
            E+E+  G +  +E V+ K+
Sbjct: 245  EFERKHGTQSLVETVQAKS 263


>gi|326532510|dbj|BAK05184.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 301

 Score =  218 bits (554), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/187 (56%), Positives = 142/187 (75%), Gaps = 2/187 (1%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
           V +G++VSGVV+ VTP AVVV V   G+SKG+I  EHLAD+      +K+++KPG+EF+Q
Sbjct: 102 VPVGTIVSGVVERVTPEAVVVSV--NGFSKGSILNEHLADYHGQTVRLKNLLKPGHEFNQ 159

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           LLVLD +  NL+LSAK+SLIN+   +PS+ S I    +VHGY+CNII+ GCFVRFLG LT
Sbjct: 160 LLVLDAKGQNLILSAKHSLINTRNDIPSELSQIQAGVIVHGYICNIIDGGCFVRFLGHLT 219

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 721
           GF+P+ KAVD     LS  ++VGQSVRS++L+VN E+ R+ LSL+ S CSS D SF+Q +
Sbjct: 220 GFSPKDKAVDRPIEKLSDAFFVGQSVRSHVLNVNEESSRVKLSLQHSKCSSADCSFIQGY 279

Query: 722 FLLEEKI 728
           FLL++K+
Sbjct: 280 FLLDQKV 286



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE--------IVKPGKKF 418
           T++ V  G +V G V  V     +V   G  K      H++++         ++KPG +F
Sbjct: 98  TNTSVPVGTIVSGVVERVTPEAVVVSVNGFSKGSILNEHLADYHGQTVRLKNLLKPGHEF 157

Query: 419 KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 478
               +L+  VL  K + + ++ K +L+ ++  I S  ++    +I HG+I  I   GCFV
Sbjct: 158 N---QLL--VLDAKGQNLILSAKHSLINTRNDIPSELSQIQAGVIVHGYICNIIDGGCFV 212

Query: 479 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 530
           RF   + GF+P+ +    P  + S  + VGQ V+  +++    S R+ LS  
Sbjct: 213 RFLGHLTGFSPKDKAVDRPIEKLSDAFFVGQSVRSHVLNVNEESSRVKLSLQ 264


>gi|324500113|gb|ADY40064.1| Protein RRP5 [Ascaris suum]
          Length = 1854

 Score =  217 bits (552), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 104/265 (39%), Positives = 177/265 (66%), Gaps = 4/265 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P + +EF+RL+  SPNSS +WI+Y++F +S  +++KAR+IAERAL  IN REE+E  NIW
Sbjct: 1584 PTSQEEFDRLLTGSPNSSHLWIRYISFFVSEKNIDKARAIAERALNVINFREEDEIFNIW 1643

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
             AY NLE  +G    E++  +F+RA+  CD  K++  ++ +Y+   + + AD LL +M+K
Sbjct: 1644 TAYLNLELSFGTA--ESLRAIFERAISNCDALKMYKQMVRVYQNVHKIEEADTLLEEMLK 1701

Query: 1664 KFKH-SCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            KF+     VW    Q L++ ++ +  + ++++A  SLP+  H+  IS+ A +E+K G ++
Sbjct: 1702 KFRQEDLDVWFIFGQHLMQTKRFDKARELLKKATKSLPQKHHVMVISRFAQMEYKFGDSE 1761

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            +G+++FE ILS YP++ D+WS+Y+D  I+   ++  R +FER  S++L    M+  FKK+
Sbjct: 1762 QGKTLFESILSAYPRKADVWSVYVDMLIKSNKINEARQVFERVTSINLGTHNMRTFFKKW 1821

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVE 1806
            L+ E+  G EE+ + VK++A+ Y+E
Sbjct: 1822 LDMEQKHGSEEQQKLVKERAVHYIE 1846



 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 225/1039 (21%), Positives = 415/1039 (39%), Gaps = 148/1039 (14%)

Query: 58   LPTIFHVGQLVSCIVLQL-----DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 112
            L  +F  GQ+++  VL+         +K+ G R+  ++   S++   L   ++  G+VL 
Sbjct: 114  LADVFVPGQMIAYKVLRAATATDSKGRKQGGTRRAVVTCCPSVVNAHLMPSSLLNGLVLN 173

Query: 113  AYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID--VKPGLLLQGV--VRSIDRTR 166
              V+S+ED G I+ FGL S    GFLP   L + + ++  ++  +LL  +  + ++ +  
Sbjct: 174  GSVESVEDKGVIISFGLRSCELRGFLPSAALPQYANMETLIRGQVLLIRIQHLSAVGKVG 233

Query: 167  KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 226
            +V+ +S+ P+ V     + ++ + +++L+PG ++         +GV +       G +  
Sbjct: 234  RVINVSAIPE-VENLDERVVQKLHLNMLMPGTILQAEPIQSAPHGVYVELGNGVKGFIRK 292

Query: 227  FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-----VK 281
             HL    P    ++     + + A ++F    S+ + L+ +P ++    P        + 
Sbjct: 293  QHL----PPRLRRDLSKLVRSIRAVVMFCQQNSQMLVLSAHPDIIALSKPQKRNTFEGIA 348

Query: 282  VGDIYDQSKVVRVDR----GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 337
            +GD     +V  VDR       L+LD         AY T S +     +     YK GS 
Sbjct: 349  IGDKV-LCEVNEVDRYGNVHFDLILDNAPKGSLVSAYATKSHLQSANEKD---AYKPGSV 404

Query: 338  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 397
             +VR++ +R +E       K   F   + +  D  PG  ++ K+ ++ + G  ++    +
Sbjct: 405  HQVRVISYRLIERQLVVSNKREIFVQKMVSLVDAVPGEKIRAKIESIKANGLGMKVYDRI 464

Query: 398  KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSY 455
             A  P+ H+++ +  +  K +  G  L  R+L   +  +R+ +T K +L+ +   ++  Y
Sbjct: 465  SAFIPIAHVADKQFTRIEKHYSKGQMLDCRILEADALKRRLILTSKPSLLNTSYKLIKDY 524

Query: 456  AEATDRLITHGWI-TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV-VKC 513
            +      +T G++  K E  G  + FY GV+ +             P     +G+V + C
Sbjct: 525  SAENVGAVTLGYVRAKHENGGLLIGFYGGVRAYM-----------FPKEAARLGEVKLGC 573

Query: 514  RI---MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG------VVDVVTPNAVVVYV 564
             +   + S+   R+  L  +  P+  S+  +++  + + G          VT N+ VV  
Sbjct: 574  TVQVNVQSVDVERQRMLVAVADPSLTSDTAILRSNAFMEGKDVPLCYSATVTGNSQVVTG 633

Query: 565  IAKGYS-----------KGTIPT----EHLADHLEH-ATVMKSVIKPGYEFDQLLVLDNE 608
              +G              GT+ T    E L+D L+     +    K G +  Q+ VL  +
Sbjct: 634  TKQGQRIDLSVHLGKKLGGTVQTSMALELLSDTLDPLVDTLTDCFKIGSKIPQVTVLSEK 693

Query: 609  SSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHG-YVCNII-----ETGCFVRFLGRLT 661
            +  + +S+K  LI+  ++ P     IH  + +  G  VC  +     E G FV   G   
Sbjct: 694  AGIIKVSSKRFLIDWLERHPP----IHSIDDLSKGLLVCGTVTQRHSEMGYFVELAGGSA 749

Query: 662  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 721
              AP    VD    D      VGQ+V + +  ++ E  R +L L    C   D     E+
Sbjct: 750  LVAPARFIVDSTEEDPQNEVQVGQTVLARVSSLDVERKRFSLILNPPLCCELDDG---EN 806

Query: 722  F------LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE----- 770
            +      LLE  IA          + +W    + G      +  S D  +VV        
Sbjct: 807  WCSLGLRLLEYTIA----------DWEWCAANLEGGKELPSLGASVDVTLVVPLNDALTV 856

Query: 771  EHSD--VYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            E SD  + G+             G  ++A +LDVA    L    L+    D  +E  S  
Sbjct: 857  EWSDQKLRGYARKGNFPERKYTKGETLKALLLDVA----LPSCELEFYIFDEDKE--STL 910

Query: 829  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYL------------VLSLPEYNHSIGYAS 876
             + K K+     + + +   V   V  VK +++            V+ LP   H      
Sbjct: 911  HSAKTKKGHTKRRKVELCSEVEVCVAAVKRDFIATVTMEDSFERAVIYLPSRFH------ 964

Query: 877  VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAG---------RLLLLLKAISETET--- 924
              +  T   P  +F  G    A V     S+  G           LL  K  ++ E    
Sbjct: 965  -PNIVTPSAPAGRFECGAVCKAVVKQFCGSTLIGLAEGDLAFATALLSAKVKTKQEKKRG 1023

Query: 925  --SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 982
              S+SKR K    Y    +   +  +     + L+   G  GR+H +E+++       N 
Sbjct: 1024 ADSASKRVKPFMVYPAKVIGPWKRGKQSACAVELELPGGILGRLHGSELDESLLENERNP 1083

Query: 983  FSNF---KIGQTVTARIIA 998
             + F   KI + V  ++I+
Sbjct: 1084 IAAFLREKIAKNVYVKVIS 1102


>gi|393909953|gb|EJD75660.1| S1 RNA binding domain-containing protein [Loa loa]
          Length = 1790

 Score =  216 bits (550), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 191/302 (63%), Gaps = 5/302 (1%)

Query: 1508 AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIK 1566
            A  I+E+N    K++ + E E+++   E ++LE +  P   ++F+RLV  +PNSS +WI+
Sbjct: 1482 ADNIEEQNRPKTKEELQIEEEKKLINRERKILEANWIPDNTNDFDRLVAGTPNSSILWIR 1541

Query: 1567 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1626
            Y+ F L   DVEKAR++A+RAL  IN REE+E  N+W AY NLE  +G    E++  VF 
Sbjct: 1542 YITFFLEQNDVEKARAVADRALSVINFREEDEIFNVWTAYLNLEGNFGT--SESLKAVFD 1599

Query: 1627 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS-CKVWLRRVQRLLKQQQ- 1684
             A++  D  K++  ++ +Y+   + +  D+LL +M+K+F+H    VW    Q LL+ ++ 
Sbjct: 1600 NAIKNTDALKMYKQMVKIYQNLGKIQELDDLLDEMLKRFRHDDLDVWFIYGQHLLETKRP 1659

Query: 1685 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1744
            +  + ++++A+  L R  H+  +S+ A LEFK G  ++ +++FE IL+ YPK+TD+W++Y
Sbjct: 1660 DKARDLMKKAINCLSRKHHVTILSRFAQLEFKFGDMEQSKTIFENILNSYPKKTDVWTVY 1719

Query: 1745 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804
            +D  I++G  +  R L ER  +L L   K++  FKK++  E+  G+EE+   VK++A+ Y
Sbjct: 1720 IDLLIKVGKFEDARQLLERVTALKLSTHKIRLFFKKWVGLEQMHGDEEQQNNVKERALHY 1779

Query: 1805 VE 1806
            ++
Sbjct: 1780 LQ 1781



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 231/962 (24%), Positives = 414/962 (43%), Gaps = 123/962 (12%)

Query: 108  GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRS 161
            G+VL   V+S+ED G I++ GL S    GFL   +L     + S I+ +P LL      S
Sbjct: 152  GLVLNGVVESVEDKGVIINLGLQSVELKGFLAEKHLPPTFQKESLIEGQPLLLRIQNENS 211

Query: 162  IDRTRKVVYLSSDPDTVSKCVTK-DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
             ++  +VV LS+ P+   +C+    +K + ++ L+PG ++         +GV ++     
Sbjct: 212  SNKKSRVVSLSAVPEM--ECLDDIAVKNLKLNDLMPGTLLLVNPLQPTASGVYVNIGNDI 269

Query: 221  TGTVDIFHLQNTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NR 274
             G V+  HL        ++ND +   K     ++F    S  + L  +P ++       R
Sbjct: 270  KGYVNRQHL-----PPRYRNDSFKCLKSFKTIVMFCQQNSNLLALNGHPDIIAASKFAKR 324

Query: 275  APPSHVKVGDIYDQSKVVRVDRG----LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
                +V  GDI  + KV  V++       L+L          A+   +++ E+ V     
Sbjct: 325  TNFENVHTGDII-ECKVSNVNKNGDVNFDLVLHGDERNSLVAAFARKTEL-EDHV----- 377

Query: 331  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 390
            +YK+G+  + R+L F+ +E +     +       +    D  PGM V  KV +V   G  
Sbjct: 378  EYKKGTIHQTRVLSFKMVERILIVATRKDILAQKMVCVKDAVPGMKVIAKVESVLPKGLF 437

Query: 391  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSK 448
            V+    +    P  H+S+  I +  K F VG EL  R+L V    +R+ +T+K++L  +K
Sbjct: 438  VKIYNSIPGFIPKIHLSDKLITRIDKHFAVGDELTCRILTVNEAKERLILTNKQSLTTNK 497

Query: 449  LAILSSYAEATDRLITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSM 504
              ++ SYAE T   IT G+I  + +H   G  + FY G +GF  P+    L       + 
Sbjct: 498  DTVIKSYAEVTTNAITTGYI--VSQHPSGGLIIGFYGGTRGFMFPKETERL------GTN 549

Query: 505  YHVGQVVKCRIMSSIPASRRINLSFM-----------MKPTRVSEDDLVKLGSLVSGVV- 552
              VG  V+ R++S  P   R+ ++              +P  +   + V   ++V  ++ 
Sbjct: 550  IKVGLTVRVRVVSVDPQRGRMLVAVANAANDGTEIAKAQPFLIDGGNSVSFSAVVMNILS 609

Query: 553  --DVVTPNAVVVYVIAKGYS-----KGTIPTEHLADHLE--HATVMKSVIKPGYEFDQLL 603
              +   PN ++   +  G       K  IP E L+D L+   A++ +S I  G    ++ 
Sbjct: 610  NDNKSKPNEILNVTVRLGKKLGGKVKAFIPKELLSDCLDLPFASLSES-IALGSVLPKVT 668

Query: 604  VLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNII----ETGCFVRFL 657
            VL + + NL +++K  +I+  ++ P  +   ++    +V G   NII    E G FV   
Sbjct: 669  VLGDVAGNLKVTSKRFMIDWLEKHPRITGLQNLTKGELVCG---NIIRKHKEMGYFVELA 725

Query: 658  GRLTGFAP----RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
            G     AP    R  A+     +L     +GQ+V + +  V+ E  R  L L    C   
Sbjct: 726  GGSALTAPARFIRPMALPVSMQELQ----IGQTVVARVSSVDLERKRFALILDAHLCIPP 781

Query: 714  DAS---FMQE--HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 768
             A    F     H+ LEE +    ++  N S++       IG  I+ KV E ++  VVV 
Sbjct: 782  GAELDYFAPSIVHYSLEE-LNWFIANNPNYSQVPE-----IGECIDIKVVEISECSVVVQ 835

Query: 769  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID-RFREANSN 827
            +  + D+ G   ++      ++ GS  +A +LDV    +L    L    +D   +  N  
Sbjct: 836  YASNPDLKGCAINNT---NILQKGSCAKALVLDV----KLPTCELVLFLLDGGVQHLNEK 888

Query: 828  RQAQKKKRKREASKDLGVHQTVNAIVEIVKE-NYLVLSLPEYNH---SIGYASVSDYNTQ 883
            +       K+E    + +H+   A+  +  E +  V+S+P   H   +I    + + + Q
Sbjct: 889  KLQSLLCSKKEFDAKIWLHKREYAVATVETEKSAFVVSIPMRLHPNVNITSVDLDENSNQ 948

Query: 884  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGS 940
                 + ++G  +I T M +         L+  K  +  +++  K+ K+   Y    +G 
Sbjct: 949  CIITPKLISGNVMIGTAMEILKKYG----LIHRKFKTPIKSAVKKKLKQFKIYTAKVMGM 1004

Query: 941  LVQAEITEIKPLELRLKFGIGFHGRIHITEVN----DDKSNVVENLFSNFKIGQTVTARI 996
              + ++     LEL      G  GR+H +E +    D  S  +++     K G+TV  +I
Sbjct: 1005 WSKGDLYNAIELEL----PDGSIGRLHASEFDESFLDQTSQPIQSFLKKRK-GKTVNVKI 1059

Query: 997  IA 998
            + 
Sbjct: 1060 MC 1061


>gi|339240195|ref|XP_003376023.1| putative S1 RNA binding domain protein [Trichinella spiralis]
 gi|316975284|gb|EFV58732.1| putative S1 RNA binding domain protein [Trichinella spiralis]
          Length = 2154

 Score =  216 bits (550), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 233/851 (27%), Positives = 401/851 (47%), Gaps = 128/851 (15%)

Query: 1013 LSIKPSMLTVSEIGSKLLFEECDVS--IGQRVTGYVYKVDNEWALLTISRHLKAQLFI-- 1068
            +S++PS+    E G+  + EE  V+  +G+  +  V  VDN +  L I+   + ++F   
Sbjct: 1369 ISVQPSI----ESGTAPVIEEKGVAMAVGRLYSASVLSVDNRYVHLFIAGRYRGRIFATE 1424

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            LD  +   +  E  +   +G  VT  V+   + +K   L+     +     +   S  N 
Sbjct: 1425 LDDQFL-QDGSEPLKTVRLGTTVTVKVIGTKRIRKGGSLM----AECTMKSSKLFSKRNK 1479

Query: 1129 QTFI--HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
            +T I   E  ++G  ++        LVV+   H     HF  + N   S  +S Y     
Sbjct: 1480 KTIIGYKENFVIGEELNV-------LVVERKRH-----HFNVVVNPRWSGEVSFY---TV 1524

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
            DP S +  GQ  K  VL++    R      L L +    M      +L  +  T GK L 
Sbjct: 1525 DPRSAWRNGQLRKVYVLDVDVEKRW-----LKLSALKPAMV-----ELKENGYTFGKLLS 1574

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-----------VESPE 1295
            + +            K++++K CF ML        L+ ++ D Y           VES  
Sbjct: 1575 RDD------------KDLSTKLCFSMLGGARGVASLV-DICDNYDHAVDKWRLLQVESYY 1621

Query: 1296 KEFPIGKLVAGRV-LSVEPLSKRVEVTLKTSDSRTASQSEINN------LSNLHVGDIVI 1348
            K F +GKL      +S+ P       +L   +S  A+ + I +       S L VG++  
Sbjct: 1622 KLFVVGKLENNFWHVSLRP-------SLTGENSSEANNATIRDDPLYSLASELAVGNVYR 1674

Query: 1349 GQIKRVESY--GLFITIENTNLVGLCHVSELSE--DHVDNIETIYRAGEKVKVKILKVDK 1404
            G + +V  Y  GL + + +  L G      +SE  D V  ++  +  G  V VK++ +DK
Sbjct: 1675 GFVSKVRHYKKGLTVLLGH-ELFGNVPCGLISECTDAV-RLDQTFPIGTVVTVKVMSLDK 1732

Query: 1405 EKRRISLGMKSSYFKNDADNLQMSSEEESDEAI-EEVGSYNRSSLLENSSVAVQD---MD 1460
                ++L M S                  D  + ++V    R  L  + S++ Q    ++
Sbjct: 1733 SNGNLTLSMLSK-----------------DTGLPDQVPEKCRKLLQSDDSISSQAQLVLN 1775

Query: 1461 MESEDGGSLVL---AQIESRASVPPLEVNLD-DEQPD---MDNG------ISQNQGHTDE 1507
               E   +L L   +  ES A+   ++V+L+ D   D   M NG       + NQ  +  
Sbjct: 1776 KAEESPAALPLRACSWFESAATKTLIDVSLNADNVSDGTLMVNGKHGAFIANGNQCSSAA 1835

Query: 1508 AKTID---EKNNRHAKKKEKEER--EQEIRAAEERLLEKDAP-RTPDEFERLVRSSPNSS 1561
            +   D   E   R  K K + +R  E+E+   E  L++ + P  T ++++R + +SP+SS
Sbjct: 1836 SGENDYELEVAEREGKSKLELDRLDEEEVLKKELMLMDPERPIETVEDYDRALVASPSSS 1895

Query: 1562 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1621
             +WI+YMA+ +   +++KARS+A +AL+TI   EE E+ N+W+A  NLENEYG    E +
Sbjct: 1896 MLWIRYMAYFVQCNEIDKARSVASKALKTIAYNEEKERFNVWIALMNLENEYGT--GETM 1953

Query: 1622 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1681
             +  + AL   D ++V+L LL +Y+R+++   AD +   ++KK++    VW+   +  ++
Sbjct: 1954 DETVRNALLVNDQQQVYLQLLKIYDRSKKLDAADAVTEVLLKKYRSQFDVWITVGKHFMQ 2013

Query: 1682 -QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTD 1739
              + E   A+++RA+ SLP + H+  +S+ A +EFK  G  +RG ++FE IL+++P+R D
Sbjct: 2014 TNRAEKAHAIMERAMKSLPFNMHVDLMSRFAQMEFKFEGDVERGCTIFENILNDHPRRFD 2073

Query: 1740 LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1799
            +W +Y+D   +  ++D  R L  R  SL +   KM+  FKK+LE E   G  E +  VK 
Sbjct: 2074 IWLVYVDLMAKHRNIDEARPLLRRVTSLKMSAHKMRSFFKKWLELENRYGTAETVADVKS 2133

Query: 1800 KAMEYVESTLA 1810
            +A +YV +  +
Sbjct: 2134 RATDYVNNVFS 2144



 Score =  150 bits (378), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 328/1462 (22%), Positives = 598/1462 (40%), Gaps = 255/1462 (17%)

Query: 8    AGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN---LLPTIFHV 64
            AG+     V    + ++ + +PG + G+ +A+      +D+     ED     L ++F  
Sbjct: 408  AGLLTVACVHYCWDTEVNVEMPGNMNGILKASSVSQSFVDHVQAKREDEEAATLASLFEP 467

Query: 65   GQLVSCIVLQLDDDKKEIGKRKI---WL-SLRLSLLYKGLSLETVQEGMVLTAYVKSIED 120
             +L+ C+ + +D + ++    K+   WL +   + L   ++  T+++  V+   V+S+E+
Sbjct: 468  AELI-CVKV-IDKEMRQFASGKMHTTWLVTTNPADLNAHITPSTLRKHAVIGCAVRSVEE 525

Query: 121  HGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 176
             GY++  G  +  GFL          EN  + +   +L   V  +     +VV L+    
Sbjct: 526  KGYLMDLGFQNVHGFLSFAEACRFYPENKQLPIGKPILCTVVEPAAATGGRVVQLN---- 581

Query: 177  TVSKCVTKDLKGISI---------DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 227
                C+   L G  +          LL+PG++  T VQ   + G++    +   G + + 
Sbjct: 582  ----CLNGQLNGTDVPKIDENFPKSLLMPGLLCRTTVQQHCQQGLICKLNSDLYGWLSLA 637

Query: 228  HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYD 287
                        N+ +    V   + +  P S  VG +   YLL            D   
Sbjct: 638  DSPKRRKRA-LANEQSLQGAVELMVTYSLPQSSMVGFSSADYLLRRTRLVERFSF-DAKG 695

Query: 288  QSKVVRVDRGLGLLLDIPSTPVSTPAYVT----ISDVAEEEVRK-------------LEK 330
              +  +V R         STP     ++T    I +VA   +RK             L  
Sbjct: 696  SLQTCKVRR---------STPEKV-QFITDSGAIVNVANCRLRKPVGKKKKSTEKYKLAT 745

Query: 331  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 390
            K+      RVR++G   L+ +  G   A           +   G+ V  KV+ V    A+
Sbjct: 746  KH------RVRMIGMSTLKMVYHGSCLACDVRQPFSKIDEAAVGLRVTAKVVRVSDTAAL 799

Query: 391  VQ----FPGGVKALCPLPHMSEFEI-VKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 443
            V+    F G + AL    H S+  + V    KF VG  +  RVL V    +R+ +T K++
Sbjct: 800  VKVFHTFDGKIDAL----HFSDGLVSVGCRAKFVVGQTVPTRVLAVDKDLQRLYLTAKRS 855

Query: 444  LVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE-- 500
            LVKS L +LS+Y AEA   +     +  +E+ G  + FYN V+G        L  G +  
Sbjct: 856  LVKSDLPLLSAYTAEAVGNVYDGFVVQLLERSGVLIGFYNNVRGVLDERAFQL-AGYQKQ 914

Query: 501  -PSSMYHVGQVV----------KCRIMSSIPASRRINLSFMMKPT-RVSEDDL------- 541
             P+ +YHVGQVV          K RI  ++P      L +M+  + +VS   L       
Sbjct: 915  SPTDVYHVGQVVRVLVVRVDVDKRRIDLALPECSARGLQWMLGCSGKVSNSKLEADVGQC 974

Query: 542  VKLGS----------LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 591
             + G           L+   V  +  + ++V ++  G S   +P+ HL D L    ++ +
Sbjct: 975  ARAGGSKRKPPPFFELLKAEVKALRDDWLLVELVEYGVS-ARLPSAHLTDSLTTGHLLLA 1033

Query: 592  VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNI-I 648
              + G + D  +VL N    L+++AK SL+   +  Q P     +    +V G +  +  
Sbjct: 1034 SFRVGDKLD--VVLFNSVKGLVVTAKPSLLYLMRNMQAPRSLDDLKCGQLVTGVLARVHP 1091

Query: 649  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            E G F+   G ++   P+SK       D      +G +V   ++ VN + G++ ++LK  
Sbjct: 1092 EHGYFIDLPGNMSALCPKSKVEWKCETDAGLANLIGATVVGRVMTVNPQAGKLIINLKLK 1151

Query: 709  CCS----STDASFMQEHFLLEEKIAMLQSSKHNGSELKW----VEGFIIGSVIEGKVHES 760
             C      T  + ++++  LEE+  +L     N S   W    +  + IG ++E  V   
Sbjct: 1152 KCLLNGLHTSIALLKQY--LEER-ELLSQRFRNPSNTDWKRRLLSKYQIGQLVECTVGMV 1208

Query: 761  NDFGVVVSFEEHSDVYG-FITHHQLAGATVES--GSVIQAAILDVAKAERLVDLSLKTVF 817
             + G++ + E+   V G F++        VE   GS +   ++ V  +ER ++L+     
Sbjct: 1209 VESGLICTVED--GVPGIFVSELLDPHWNVEYAVGSSLTGLVVCVNYSERCLELAAMKQL 1266

Query: 818  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASV 877
            +  FR+      A +++R + A  D     ++ A V +   + ++LS     H + Y S 
Sbjct: 1267 LANFRQV-----ALRRRRHQPAVGD-----SLTATVLVANADCVLLSTA--GHGLCYMSA 1314

Query: 878  S-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLL---------------LLKAISE 921
               YN    P+ +  + + +   V A    +T+G+ L+               L  AIS 
Sbjct: 1315 RLHYNDFSLPRLKNPDKRQLRVRVQAY---TTSGQCLVSSVRDEQLCSKIERRLRSAISV 1371

Query: 922  TETSSSKRA----KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 977
              +  S  A    +K  +  VG L  A +  +    + L     + GRI  TE++D    
Sbjct: 1372 QPSIESGTAPVIEEKGVAMAVGRLYSASVLSVDNRYVHLFIAGRYRGRIFATELDDQFLQ 1431

Query: 978  VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE-----IGSKLLF- 1031
                     ++G TVT ++I  + +     S + E ++K S L         IG K  F 
Sbjct: 1432 DGSEPLKTVRLGTTVTVKVIG-TKRIRKGGSLMAECTMKSSKLFSKRNKKTIIGYKENFV 1490

Query: 1032 --EECDVSIGQRVTGYVYKVDN-EWALLTISRHLKAQLFILD--SAYEPSELQEFQRRFH 1086
              EE +V + +R   +   V N  W+        +   + +D  SA+   +L++      
Sbjct: 1491 IGEELNVLVVERKRHHFNVVVNPRWS-------GEVSFYTVDPRSAWRNGQLRKV----- 1538

Query: 1087 IGKAVTGHVLSINKEKKLLRL-VLRPF-----QDGIS-DKTVDISNDNMQTFIHEGDIVG 1139
                   +VL ++ EK+ L+L  L+P      ++G +  K +   + ++ T +    + G
Sbjct: 1539 -------YVLDVDVEKRWLKLSALKPAMVELKENGYTFGKLLSRDDKDLSTKLCFSMLGG 1591

Query: 1140 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1199
             R      GV  LV                 +IC       YD          D+ + ++
Sbjct: 1592 AR------GVASLV-----------------DIC-----DNYDH-------AVDKWRLLQ 1616

Query: 1200 C----KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
                 K+  + +     +HV  SLR SL G +S+ +++ +T  D P   L    +L+   
Sbjct: 1617 VESYYKLFVVGKLENNFWHV--SLRPSLTGENSSEANN-ATIRDDPLYSLA--SELAVGN 1671

Query: 1256 IVQGYVKNVT--SKGCFIMLSRKLDAKV---LLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            + +G+V  V    KG  ++L  +L   V   L+S  +D      ++ FPIG +V  +V+S
Sbjct: 1672 VYRGFVSKVRHYKKGLTVLLGHELFGNVPCGLISECTDAV--RLDQTFPIGTVVTVKVMS 1729

Query: 1311 VEPLSKRVEVTLKTSDSRTASQ 1332
            ++  +  + +++ + D+    Q
Sbjct: 1730 LDKSNGNLTLSMLSKDTGLPDQ 1751


>gi|407923743|gb|EKG16808.1| hypothetical protein MPH_06011 [Macrophomina phaseolina MS6]
          Length = 1803

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/277 (39%), Positives = 177/277 (63%), Gaps = 11/277 (3%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L+ + P++  +FERL+   PN+S +W++YMAF + + +V+KAR I ERAL+TINIRE++E
Sbjct: 1514 LDINGPQSVADFERLLLGDPNNSALWMQYMAFQIGLNEVQKAREIGERALKTINIREQDE 1573

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT---EQNKLAD 1655
            K+NIW A  NLE E GN  ++AV + F+RA +YCD +++H  L+ +Y  T   + ++ AD
Sbjct: 1574 KMNIWTALLNLEIEQGN--DDAVDETFKRACEYCDTEEMHNKLINIYTSTGRHQHSQKAD 1631

Query: 1656 ELLYKM--IKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTA 1711
            +L  +M  IK    +   WL   + ++      +  +A++ RA  S+P   H +  +   
Sbjct: 1632 DLFQRMTKIKSITPNPAFWLNYAKFVMTTLNNPDRARALLPRATQSVPTQHHRQLTANFG 1691

Query: 1712 ILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1769
             +EF   NG A+RGR++FEG+L+ +PKR DLW ++L+ E + GD D +R L+ER  S  +
Sbjct: 1692 AIEFTSANGDAERGRTVFEGLLATFPKRWDLWDMFLELEKKHGDRDNVRRLYERMSSSKM 1751

Query: 1770 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
              ++ KF+FKK+ E+E+  G+++  E V+  A EY E
Sbjct: 1752 KARRAKFVFKKWAEWEQVNGDKKTRERVEALAKEYAE 1788



 Score =  191 bits (485), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 192/771 (24%), Positives = 341/771 (44%), Gaps = 68/771 (8%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDNEIEAN--- 53
           + ++ G  + G V ++  +D+ + LP  L G         +  + ++ +LD + +++   
Sbjct: 150 KRLAPGSMILGQVTQITSRDIALALPNNLTGFVPLTAVSDQFTERIEALLDQDEKSDAED 209

Query: 54  -----EDNLLPTIFHVGQLVSCIVLQLDDDKK---EIGKRKIWLSLRLSLLYKGLSLETV 105
                ED  L  IF +GQ +  +V    +D     +  K++I LS++       +S   +
Sbjct: 210 TSSEDEDIELKNIFKLGQYLRAVVTSTGEDSAKGAQKNKKRIELSVKPQDANNRISRSDL 269

Query: 106 QEGMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID---VKPGLLLQGVVR 160
               ++ A V S+EDHG ++  GL   S  GF+      E  GID   ++ G +   +V 
Sbjct: 270 VANTMVQASVVSVEDHGLVMDLGLADGSIKGFMSSK---EVGGIDHTKIEKGSVFLCMVT 326

Query: 161 SIDRTRKVVYLSSDPDTVSKCVTKD--LKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
            +    K+  LS+D   +      +   +  +ID+ VPG  V   V  +   G+  + + 
Sbjct: 327 GLSSNGKIAKLSADFQKIGNVKKANYLTEAPTIDVFVPGTAVEFLVSEVTTTGLAGTIMG 386

Query: 219 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL----- 271
               T D+ H        +  N Y   +KV ARI+   P    R +G+++  ++L     
Sbjct: 387 LIDATADVVHAGAGASQQDLTNKYKIGEKVKARIICTFPGDERRKLGVSVLDHVLSLTER 446

Query: 272 ---HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
                + P   + +  I +++KV +V+   GL +D+    V  P +  IS +++++V  L
Sbjct: 447 QSADAKGPLDVLPISSIVEEAKVTKVEPIRGLFMDVGVKRV--PGFAHISRLSDDKVDSL 504

Query: 329 EK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV---- 381
            +    YK GS  R R++G+  ++G+    L+            DVK G VVKGKV    
Sbjct: 505 SETTGAYKLGSTHRARVVGYNPVDGMYIVSLEKKVLNQPFLRIDDVKVGEVVKGKVEKVM 564

Query: 382 -IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITV 438
             A  S   IV    G+  L    H+++  +  P KK+K G  +  RVL    +R  + +
Sbjct: 565 ITARGSGAVIVNLAEGISGLVSETHIADVHLQHPEKKYKEGLAVTARVLSTDPERRQVRL 624

Query: 439 THKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 498
           T KKTLV S   + ++Y++        G I K+   G  V+FY  ++GF P SE+     
Sbjct: 625 TLKKTLVNSDAPVWANYSDVQIGEQAPGTIIKLLPAGAIVQFYGDLRGFLPVSEMSEAYI 684

Query: 499 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR-VSEDDL---VKLGSLVSGVVDV 554
            +P+  + +GQ V    +S      ++ +S     +R  ++ D    +++ ++V GVV  
Sbjct: 685 KDPAEHFRIGQTVTVHALSVNAEEDKMTVSCRDPASRNAAQQDTFGSLQVTTIVKGVVSE 744

Query: 555 VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESSN-- 611
            +   V V +      KG +   HL D  E     K   I+ G   + L++L        
Sbjct: 745 KSEKNVTVELEGSAI-KGILRLGHLTDGSEKKGESKIKRIRVGQTLEDLVILSKSDKRPV 803

Query: 612 LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
           + LS K SL+ +AQ   LP+    +     V G+V NI +   FV F   L G   +S+ 
Sbjct: 804 VTLSNKPSLVAAAQSGSLPAKFEDVKEGKPVTGFVRNIDDQRVFVEFADGLVGLLLKSQ- 862

Query: 670 VDGQRADLSKTYYVG----QSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
               + ++ KT   G     +V   IL V+    R  ++L+    +++D +
Sbjct: 863 ---MKEEMQKTVGYGLQNDSTVTGKILSVDVRQRRFLITLRDDHQAASDKA 910



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 169/806 (20%), Positives = 341/806 (42%), Gaps = 132/806 (16%)

Query: 659  RLTGFAPRSKAVDGQRADLSKT---YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
            R+ GFA  S+  D +   LS+T   Y +G + R+ ++  N   G   +SL++        
Sbjct: 486  RVPGFAHISRLSDDKVDSLSETTGAYKLGSTHRARVVGYNPVDGMYIVSLEKKV------ 539

Query: 716  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE-----SNDFGVVVSFE 770
              + + FL                    ++   +G V++GKV +          V+V+  
Sbjct: 540  --LNQPFLR-------------------IDDVKVGEVVKGKVEKVMITARGSGAVIVNLA 578

Query: 771  EHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
            E   + G ++   +A   ++        G  + A +L      R V L+LK   ++    
Sbjct: 579  EG--ISGLVSETHIADVHLQHPEKKYKEGLAVTARVLSTDPERRQVRLTLKKTLVNSDAP 636

Query: 824  ANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 882
              +N              D+ +  Q    I++++    +V     Y    G+  VS+ + 
Sbjct: 637  VWANYS------------DVQIGEQAPGTIIKLLPAGAIVQF---YGDLRGFLPVSEMSE 681

Query: 883  Q--KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS--SYDV 938
               K P + F  GQ+V  TV AL  ++   ++      +S  + +S   A++ +  S  V
Sbjct: 682  AYIKDPAEHFRIGQTV--TVHALSVNAEEDKM-----TVSCRDPASRNAAQQDTFGSLQV 734

Query: 939  GSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
             ++V+  ++E     + ++  G    G + +  + D      E+     ++GQT+   +I
Sbjct: 735  TTIVKGVVSEKSEKNVTVELEGSAIKGILRLGHLTDGSEKKGESKIKRIRVGQTLEDLVI 794

Query: 998  -AKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQRVTGYVYKVDNEWAL 1055
             +KS+K       +  LS KPS++  ++ GS    FE  DV  G+ VTG+V  +D++   
Sbjct: 795  LSKSDK-----RPVVTLSNKPSLVAAAQSGSLPAKFE--DVKEGKPVTGFVRNIDDQRVF 847

Query: 1056 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIG----KAVTGHVLSINKEKKLLRLVLRP 1111
            +  +  L     +L S  +    +E Q+    G      VTG +LS++  ++   + LR 
Sbjct: 848  VEFADGLVG--LLLKSQMK----EEMQKTVGYGLQNDSTVTGKILSVDVRQRRFLITLRD 901

Query: 1112 FQDGISDKTVD-------ISNDNMQTFIHE-----GDIVGGRISKI-LSGV--GGLVVQI 1156
                 SDK           +N+ +   + E      D   G+++   ++GV    L VQ+
Sbjct: 902  DHQAASDKATSAKASKGPATNETLVNSVDESCKSISDFTFGKLTTARITGVKETQLNVQL 961

Query: 1157 GPHLYGRVHFTELKNICVSDPLSGYD--EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
              +L+GR+  +E+           +D  + +  PL  +   Q +  +++ I    R    
Sbjct: 962  ADNLFGRIDVSEV--------FDSWDHIKDRKHPLRNFKAKQNIPVRIIGI-HDARSHRF 1012

Query: 1215 VELSLRSSLDGMS--STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
            + +S R+S   +   +  + +LS + D     L  +E L+       +V N+     ++ 
Sbjct: 1013 LPISHRTSKVPVFELTAKAVELSKESD-----LLSLEKLTVGSSHIAFVNNIGDNCVWVN 1067

Query: 1273 LSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            ++  +  ++   +L+D    +      FP+G  +  RV SV   + R+++T  TSDS   
Sbjct: 1068 ITPNVRGRIDFMDLADDVSLLNDVPAHFPVGSALKVRVKSVNVSANRLDLT-ATSDSTVK 1126

Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1390
              +      +L  G  + G++ +V    + + + + N+     ++E ++D+ +   TIY 
Sbjct: 1127 PTT----FKDLAPGMTLPGRVTKVSERNIMVQLSD-NVSAPVTLTEFTDDYTEANPTIYN 1181

Query: 1391 AGEKVKVKILKVDKEKRRISLGMKSS 1416
              + V+V +L+VD   +++ L M+ S
Sbjct: 1182 KNDIVRVSVLEVDAPNKKLHLTMRPS 1207



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 149/332 (44%), Gaps = 41/332 (12%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 153
            LSLE +  G    A+V +I D+   ++   P+  G +   +LA++  +  DV      G 
Sbjct: 1041 LSLEKLTVGSSHIAFVNNIGDNCVWVNI-TPNVRGRIDFMDLADDVSLLNDVPAHFPVGS 1099

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVT-KDLKGISIDLLVPGMMVSTRVQSILENGV 212
             L+  V+S++ +   + L++  D+  K  T KDL         PGM +  RV  + E  +
Sbjct: 1100 ALKVRVKSVNVSANRLDLTATSDSTVKPTTFKDL--------APGMTLPGRVTKVSERNI 1151

Query: 213  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY-LL 271
            M+      +  V +    + +   N    YN++  V   +L VD  ++ + LT+ P  +L
Sbjct: 1152 MVQLSDNVSAPVTLTEFTDDYTEAN-PTIYNKNDIVRVSVLEVDAPNKKLHLTMRPSKVL 1210

Query: 272  HNRAPPSHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEE 324
             +  P    +V +I  Q KV  V RG        GL +   S   S  A+V +SD+++  
Sbjct: 1211 SSSLPVKDPQVANIR-QVKVNDVVRGFIKNVSDKGLFV---SLGPSVTAFVRVSDLSDSY 1266

Query: 325  VRKLEKKYKEGSCVRVRILG----FRHLE-GLATGILKASAFEGLVFTHSDVKPGMVVKG 379
            ++  +  ++    V+ +I+       H++  L   +L  +    L F   D+K GMV+ G
Sbjct: 1267 IKDWKSAFEVDQLVKGKIIQVDPQLNHVQMSLKASMLDKNYVPPLTF--DDMKAGMVITG 1324

Query: 380  KVIAVDSFGA--IVQFPGGVKALCPLPHMSEF 409
            K+  V+ FG   +V     V  LC   H SE 
Sbjct: 1325 KIRKVEEFGVFIVVDNSKNVSGLC---HRSEI 1353



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 97/184 (52%), Gaps = 13/184 (7%)

Query: 1247 KIEDLSPNMIVQGYVKNV--TSKGC---FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            +I+D+    +V+G V+ V  T++G     + L+  +   V  ++++D +++ PEK++  G
Sbjct: 546  RIDDVKVGEVVKGKVEKVMITARGSGAVIVNLAEGISGLVSETHIADVHLQHPEKKYKEG 605

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI---NNLSNLHVGDIVIGQIKRVESYG 1358
              V  RVLS +P  ++V +TLK    +T   S+     N S++ +G+   G I ++   G
Sbjct: 606  LAVTARVLSTDPERRQVRLTLK----KTLVNSDAPVWANYSDVQIGEQAPGTIIKLLPAG 661

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
              +     +L G   VSE+SE ++ +    +R G+ V V  L V+ E+ ++++  +    
Sbjct: 662  AIVQFYG-DLRGFLPVSEMSEAYIKDPAEHFRIGQTVTVHALSVNAEEDKMTVSCRDPAS 720

Query: 1419 KNDA 1422
            +N A
Sbjct: 721  RNAA 724



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 93/439 (21%), Positives = 178/439 (40%), Gaps = 65/439 (14%)

Query: 414  PGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVK-----------SKLAILSSYAEA 458
            P + FK    +  R++G+   R    + ++H+ + V            SK + L S  + 
Sbjct: 987  PLRNFKAKQNIPVRIIGIHDARSHRFLPISHRTSKVPVFELTAKAVELSKESDLLSLEKL 1046

Query: 459  TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIM 516
            T       ++  I  +  +V     V+G     +L  D     +  + + VG  +K R+ 
Sbjct: 1047 TVGSSHIAFVNNIGDNCVWVNITPNVRGRIDFMDLADDVSLLNDVPAHFPVGSALKVRVK 1106

Query: 517  SSIPASRRINLSFM----MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 572
            S   ++ R++L+      +KPT   +   +  G  + G V  V+   ++V  ++   S  
Sbjct: 1107 SVNVSANRLDLTATSDSTVKPTTFKD---LAPGMTLPGRVTKVSERNIMVQ-LSDNVSAP 1162

Query: 573  TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP---- 628
               TE   D+ E    + +  K       +L +D  +  L L+ + S + S+  LP    
Sbjct: 1163 VTLTEFTDDYTEANPTIYN--KNDIVRVSVLEVDAPNKKLHLTMRPSKVLSSS-LPVKDP 1219

Query: 629  --SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 686
              ++   +  N VV G++ N+ + G FV     +T F   S   D    D    + V Q 
Sbjct: 1220 QVANIRQVKVNDVVRGFIKNVSDKGLFVSLGPSVTAFVRVSDLSDSYIKDWKSAFEVDQL 1279

Query: 687  VRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 746
            V+  I+ V+ +   + +SLK        AS + ++++       +++             
Sbjct: 1280 VKGKIIQVDPQLNHVQMSLK--------ASMLDKNYVPPLTFDDMKA------------- 1318

Query: 747  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAI 799
               G VI GK+ +  +FGV +  +   +V G     ++A   VE        G  ++A +
Sbjct: 1319 ---GMVITGKIRKVEEFGVFIVVDNSKNVSGLCHRSEIADQKVEDVTKLYSEGDAVKAVV 1375

Query: 800  LDVAKAERLVDLSLKTVFI 818
            L V K +R V+  LK  ++
Sbjct: 1376 LKVDKEKRKVNFGLKASYL 1394



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 178/820 (21%), Positives = 334/820 (40%), Gaps = 102/820 (12%)

Query: 633  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
             + P S++ G V  I      +     LTGF P + AV  Q  +  +   + Q  +S+  
Sbjct: 151  RLAPGSMILGQVTQITSRDIALALPNNLTGFVPLT-AVSDQFTERIEAL-LDQDEKSDAE 208

Query: 693  DVNSETGRITLS----LKQ---SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            D +SE   I L     L Q   +  +ST     +     +++I +    +   + +   +
Sbjct: 209  DTSSEDEDIELKNIFKLGQYLRAVVTSTGEDSAKGAQKNKKRIELSVKPQDANNRISRSD 268

Query: 746  GFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAG---ATVESGSVIQAAILD 801
              +  ++++  V    D G+V+        + GF++  ++ G     +E GSV    +  
Sbjct: 269  -LVANTMVQASVVSVEDHGLVMDLGLADGSIKGFMSSKEVGGIDHTKIEKGSVFLCMVTG 327

Query: 802  VAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT-VNAIVEIVKENY 860
            ++   ++  LS     I   ++AN   +A         + D+ V  T V  +V  V    
Sbjct: 328  LSSNGKIAKLSADFQKIGNVKKANYLTEA--------PTIDVFVPGTAVEFLVSEVTTTG 379

Query: 861  L---VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL--LLL 915
            L   ++ L +    + +A      +Q+    ++  G+ V A ++         +L   +L
Sbjct: 380  LAGTIMGLIDATADVVHAGAG--ASQQDLTNKYKIGEKVKARIICTFPGDERRKLGVSVL 437

Query: 916  LKAISETETSSSKRAKKKSSYDVGSLVQ-AEITEIKPLE-LRLKFGIG-FHGRIHITEVN 972
               +S TE  S+          + S+V+ A++T+++P+  L +  G+    G  HI+ ++
Sbjct: 438  DHVLSLTERQSADAKGPLDVLPISSIVEEAKVTKVEPIRGLFMDVGVKRVPGFAHISRLS 497

Query: 973  DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFE 1032
            DDK + +      +K+G T  AR++  +    M     + +S++  +L      ++    
Sbjct: 498  DDKVDSLSETTGAYKLGSTHRARVVGYNPVDGM-----YIVSLEKKVL------NQPFLR 546

Query: 1033 ECDVSIGQRVTGYVYKV-----DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1087
              DV +G+ V G V KV      +   ++ ++  +     + ++      LQ  ++++  
Sbjct: 547  IDDVKVGEVVKGKVEKVMITARGSGAVIVNLAEGISG--LVSETHIADVHLQHPEKKYKE 604

Query: 1088 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1147
            G AVT  VLS + E++ +RL L+      SD  V  +  ++Q     G+   G I K+L 
Sbjct: 605  GLAVTARVLSTDPERRQVRLTLKKTLVN-SDAPVWANYSDVQI----GEQAPGTIIKLLP 659

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
               G +VQ    L G +  +E+    + DP   +  GQ                      
Sbjct: 660  A--GAIVQFYGDLRGFLPVSEMSEAYIKDPAEHFRIGQ---------------------- 695

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDV---DTPGKHLEKIEDLSPNMIVQGYVKNV 1264
            TV  T H  LS+ +  D M+ +     S +    DT G        L    IV+G V   
Sbjct: 696  TV--TVHA-LSVNAEEDKMTVSCRDPASRNAAQQDTFGS-------LQVTTIVKGVVSEK 745

Query: 1265 TSKGCFIMLSRKLDAKVL-LSNLSDGYV---ESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1320
            + K   + L       +L L +L+DG     ES  K   +G+ +   V+ +    KR  V
Sbjct: 746  SEKNVTVELEGSAIKGILRLGHLTDGSEKKGESKIKRIRVGQTLEDLVI-LSKSDKRPVV 804

Query: 1321 TLKTSDSRTA---SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1377
            TL    S  A   S S      ++  G  V G ++ ++   +F+   +  LVGL   S++
Sbjct: 805  TLSNKPSLVAAAQSGSLPAKFEDVKEGKPVTGFVRNIDDQRVFVEFAD-GLVGLLLKSQM 863

Query: 1378 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1417
             E+    +    +    V  KIL VD  +RR  + ++  +
Sbjct: 864  KEEMQKTVGYGLQNDSTVTGKILSVDVRQRRFLITLRDDH 903


>gi|170571773|ref|XP_001891858.1| S1 RNA binding domain containing protein [Brugia malayi]
 gi|158603388|gb|EDP39328.1| S1 RNA binding domain containing protein [Brugia malayi]
          Length = 1795

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/277 (37%), Positives = 181/277 (65%), Gaps = 5/277 (1%)

Query: 1533 AAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1591
            A E ++LE D  P   ++F+RLV  SPNSS +WI+Y+ F L   D++KAR++AERAL  I
Sbjct: 1512 ARERKILEADWIPDNTNDFDRLVTGSPNSSILWIRYITFFLEQNDIDKARAVAERALSVI 1571

Query: 1592 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1651
            N REE+E  N+W AY NLE  +G    E++  VF  A++  DP K++  ++ +Y++ E+ 
Sbjct: 1572 NFREEDEIFNVWTAYLNLEGNFGT--SESLKAVFANAVRNTDPLKMYKQMVKIYQKLEKI 1629

Query: 1652 KLADELLYKMIKKFKHS-CKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQ 1709
            +  D+LL +M+K+F+H    VW    Q LL+ ++ +  + ++++A+  L R  H+  +S+
Sbjct: 1630 EEIDDLLEEMLKRFRHDDLDVWFIYGQHLLETKRPDKARNLMKKAINCLQRKHHVTILSR 1689

Query: 1710 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1769
             A LEFK G  ++ +++FE IL+ YPK+TD+W++Y+D  I+   ++  R L ER  +L L
Sbjct: 1690 FAQLEFKFGDIEQSKTIFESILNSYPKKTDVWTVYIDXLIKAEKIEDARQLLERVTALKL 1749

Query: 1770 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
               K++  FKK+++ E+  G+E++   VK++A++Y++
Sbjct: 1750 STHKIRLFFKKWVDLEQKHGDEKQQNNVKERAVQYLQ 1786



 Score =  138 bits (347), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 217/863 (25%), Positives = 370/863 (42%), Gaps = 105/863 (12%)

Query: 3   PQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIF 62
           P  ++ GM   GVV ++ E ++++    G+       +    +L  E   N    L  +F
Sbjct: 52  PNFLTEGMLGLGVVMKIREAEILLECSDGVVVKVPVQNFGSLML--ETLRNSSITLEDVF 109

Query: 63  HVGQLVSCIVLQLDDDKKEIGKRK----IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 118
            VGQ+++  V++  +      KRK      +S    ++   L+   + +G+VL   V S+
Sbjct: 110 RVGQMLAFKVIKGRETHDTQKKRKKASYPIVSCDPLIVNFHLNPGALIDGLVLNGVVGSV 169

Query: 119 EDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLS 172
           ED G I+  GL S    GFL   +L     + S I  +P LL      S ++  +V+ LS
Sbjct: 170 EDKGVIIDLGLQSVELKGFLAERHLPSTFPKESLIKGQPLLLRIQNESSSNKKARVISLS 229

Query: 173 SDPD--TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
           + P+   +   V K LK   ++ L+PG ++         +GV ++      G V   HL 
Sbjct: 230 AVPEMECLDXAVVKKLK---LNDLMPGTLLLVNPLQPTHSGVYVNIGNDIKGYVSRQHL- 285

Query: 231 NTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVGD 284
                  ++ND Y   K     ++F    S  + L  +P +     L  R    +  +GD
Sbjct: 286 ----PPRYRNDPYKCLKSFKTIVMFCQQNSNLLTLNGHPDIIAVSKLVKRTNFENXHIGD 341

Query: 285 IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 344
           I  + +V  VD+   +  D+            ++  A +   K   +YK+G+  + R+L 
Sbjct: 342 II-ECRVSSVDKNGNVNFDLVHEDERNS---LVAAFARKTKLKDSVEYKKGTVHQARVLS 397

Query: 345 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
           F+ +E +     + +     + +  D  PG+ V  K+ +V   G  V+    +    P  
Sbjct: 398 FKMVERILIVATQKNILAQKMVSIKDAVPGVKVTAKIESVLDKGLFVKIYNSIPGFIPKI 457

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRL 462
           H+S+  I +  K F VG EL  RVL V    +R+ +T+K++L+ SK  I+ +YAE T  +
Sbjct: 458 HLSDKLITRIEKHFVVGDELNCRVLNVNKLKERLILTNKQSLISSKDTIIKNYAEVTTNV 517

Query: 463 ITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
           IT G+I  I +H   G  + FY G  GF  P+    L    +      VG  V+ R++S 
Sbjct: 518 ITTGYI--ISQHSSGGLVIGFYGGTCGFMFPKEAERLGTNVK------VGLTVRVRVVSV 569

Query: 519 IPASRRINLSFM-----------MKPTRVSEDDLVKLGSLVSGVV---DVVTPNAVVVYV 564
            P  +R+ ++              +P  +  ++ +   ++V  V    D +T N V+   
Sbjct: 570 DPQRKRLLVALANTTNGGTGIARAQPFLMDRENPLSFSAVVVNVSSNGDNLTRNEVLNVS 629

Query: 565 IAKGYS-----KGTIPTEHLADHLE---HATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 616
           +  G       K  IP E L+D+L+   H+  +   I PG    ++ VL + + NL +++
Sbjct: 630 VRLGKKLGGKVKAFIPKELLSDYLDLPFHS--LNESIAPGSVLPKVTVLGDIAGNLKVTS 687

Query: 617 KYSLINSAQQLPSDASHIHPNSVVHG-YVC-NII----ETGCFVRFLG--RLTGFA---- 664
           K  +I+    L   A       +  G  VC NII    E G FV   G   LTG A    
Sbjct: 688 KRFIID---WLEKHARITGIQDLTKGDLVCGNIIQKHKEMGYFVELAGGSALTGPARFIR 744

Query: 665 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS---FMQE- 720
           P    V  Q         +GQ+V + +  V+ E  R  L L    C    A    F    
Sbjct: 745 PMMLPVSMQELQ------IGQTVVARVSSVDLERKRFALILDTHLCVPPGAKPDYFAPSM 798

Query: 721 -HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
            H+ +EE    + ++  N    K      IG  I  KV E ++  VVV   +++++ G  
Sbjct: 799 IHYTVEELNWFIANNASNSQVPK------IGECIHVKVIEVSERNVVVQHGDNTNLKGCT 852

Query: 780 THHQLAGATVESGSVIQAAILDV 802
            +   +   ++ GS  +A +LD+
Sbjct: 853 IN---STNILQKGSYAKALVLDI 872



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 6/183 (3%)

Query: 1234 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1293
            ++T  +   + +  I+D  P + V   +++V  KG F+ +   +   +   +LSD  +  
Sbjct: 407  VATQKNILAQKMVSIKDAVPGVKVTAKIESVLDKGLFVKIYNSIPGFIPKIHLSDKLITR 466

Query: 1294 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1353
             EK F +G  +  RVL+V  L +R+ +T K S   ++  + I N + +    I  G I  
Sbjct: 467  IEKHFVVGDELNCRVLNVNKLKERLILTNKQS-LISSKDTIIKNYAEVTTNVITTGYIIS 525

Query: 1354 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
              S G  +        G     E      + + T  + G  V+V+++ VD +++R+ + +
Sbjct: 526  QHSSGGLVIGFYGGTCGFMFPKE-----AERLGTNVKVGLTVRVRVVSVDPQRKRLLVAL 580

Query: 1414 KSS 1416
             ++
Sbjct: 581  ANT 583


>gi|443696428|gb|ELT97129.1| hypothetical protein CAPTEDRAFT_227890 [Capitella teleta]
          Length = 1324

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 272/1138 (23%), Positives = 494/1138 (43%), Gaps = 139/1138 (12%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANEDNL--- 57
            +++  G  + G +  V + +L +  P  L G+        A   +L+   + +   +   
Sbjct: 85   KDLVEGSLVMGCIKNVLDYELKVQFPNNLSGIVPITGLCSAYQELLELAAKGDTSRMEEL 144

Query: 58   --LPTIFHVGQLVSCIVLQLDDDKKEI--GKRKIW---LSLRLSLLYKGLSLETVQEGMV 110
              L  +FH GQ V C+V    + ++ I  G+ KI    L+L    + + +S   ++ GM 
Sbjct: 145  VTLQDLFHPGQFVVCLV----ERERSILEGESKITPAKLTLDPRQVNREISSTGLKSGMT 200

Query: 111  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR---- 166
            L  +V S EDHGY++  G+     FLP+ +   +    +  G  L  +V +++       
Sbjct: 201  LHGFVSSCEDHGYLIDIGVAKVKAFLPKADANRHFKDGLHIGSYLHCLVTNVNAEAMTSG 260

Query: 167  --KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 224
              ++V +  DP   SK   +    I++  L+PGM ++  VQ + +NGV++ FL  F G+V
Sbjct: 261  DVRMVTIDIDPKKTSKSSIRADMEINLRTLLPGMSMNVSVQKVADNGVVVKFLE-FQGSV 319

Query: 225  DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SH 279
               HL N        +DY++ ++  AR+L++ P ++ V LT   + +   A       S 
Sbjct: 320  HEKHLMNKL------SDYSEKQEFRARVLYLQPVTKVVVLTQLKHFVEVDALAASQLFSQ 373

Query: 280  VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 339
            +KVG     + V ++++         S   +   +   + + +E    +E K+  GS   
Sbjct: 374  MKVGTDIADAAVTKLNKWGAYF----SFGENVQGFARKALLTDENKTPVESKFTVGSKHL 429

Query: 340  VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI-VQFPGGVK 398
             R++GF +++ +     K S  +   F   ++ PG  V   V    S   + VQ   G++
Sbjct: 430  CRVIGFNYVDNMVLLTAKESDVKRPYFHLENLNPGDKVDAVVTKHLSKDTVQVQVGVGLR 489

Query: 399  ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYA 456
                  H ++       KKF +G+ +  R+L V  + K + +T K   +K  L +++S+ 
Sbjct: 490  GFIHRLHNADVPTSHIDKKFPIGSSIKCRILSVDYEKKALNLTCKGRQLKPSLPLITSFE 549

Query: 457  EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 516
            ++T   I  G I  I+  GC V F+NGV+GFAP   L LD     + ++ +GQ++KCR+ 
Sbjct: 550  QSTRGTIAEGCIVDIQSKGCLVVFFNGVKGFAPAGHLNLDEDTLVTDVFFLGQMIKCRVF 609

Query: 517  SSIPASRRINLSFMM-------------------KPTRVSEDDLVKLGSLVSG----VVD 553
                    + +SF +                   K T   E  +V+      G     VD
Sbjct: 610  RPKDDINGMLVSFKLDGDDENNQKKTASNKKEQKKRTGKVECKIVECRVKTVGEESLEVD 669

Query: 554  VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD-NESSNL 612
            V +P A +           ++  EHL DH+   ++ + +++  +  DQ+ VL   +   L
Sbjct: 670  VASPKATL-----------SLCHEHLTDHV---SLGRPLLRSYHAGDQIKVLMWKDDYGL 715

Query: 613  LLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 670
             +SAK SLI+S ++   P     I   ++++G+V  + +    V+    LT    +  A 
Sbjct: 716  HISAKPSLIHSLEKPSYPKTYQDIEDGNILNGFVQALQDDRILVKLFNGLTVGVHKKFAS 775

Query: 671  DGQRADLSKTYYVGQSV----RSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFL 723
            D   + L     +GQ++    R ++L    + G++  SL+ S     +      + E FL
Sbjct: 776  DEPVSSLPDLLTLGQTLSVCFRGDVL----KNGQLARSLRFSHLYKEERPTGDDILESFL 831

Query: 724  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT--- 780
             + +  M    K   +  K +  + IG V+   +  S D GV    E+   V GF T   
Sbjct: 832  SDYQRVMSAMKKSKDAVEKKLAKYHIGQVVTVTIEASRDIGVTCVTED--GVKGFATLQS 889

Query: 781  ---HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 837
               H          G  +QA +L V    + ++LSLK         A S++ A+K     
Sbjct: 890  INEHDDDEDRKFTVGESVQAVVLYVDPLTKCLELSLKK----STYHAVSSKNAEK----- 940

Query: 838  EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASV--SDYNTQKFPQKQFLNGQS 895
              S  +  +Q + A V ++KE+++++ L E  H++G  +   +  N   F +K   N  +
Sbjct: 941  --SLKVLPNQVIRAEVLLIKEDFVLVLLHE--HALGRMAFLPAMRNFNDFLEK---NLYT 993

Query: 896  VIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELR 955
            +     A+  S T   +L  L+   E    ++      S   +G   +A +T  K  ++ 
Sbjct: 994  IGQVNQAVIKSVTPNGILANLQLHQEKRLQTA-----PSLITLGKKCKAIVTGFKAQQVN 1048

Query: 956  LKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1013
            +K G    GRIH+T + D  D   ++ N FS     Q V  R I     P   K    E 
Sbjct: 1049 VKVG-KHEGRIHVTNIADSVDDGTLLRNRFSE---KQVVEVREITNQKSPVGMK----EY 1100

Query: 1014 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            + K S+L+  +  + ++      S+  R+ G+V KV      + I  + K ++ +  S
Sbjct: 1101 TTKESLLSTDDTSASVVH-----SVNDRIVGFVNKVSKNGLQVFIDANTKTRVSLAHS 1153


>gi|340518409|gb|EGR48650.1| hypothetical protein TRIREDRAFT_78062 [Trichoderma reesei QM6a]
          Length = 1799

 Score =  214 bits (546), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 314/1283 (24%), Positives = 527/1283 (41%), Gaps = 149/1283 (11%)

Query: 9    GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE-------------- 54
            G  + G V  +N+  + + LP  L G A    A+   L + +E                 
Sbjct: 144  GSLVLGQVMRINKLSVEVSLPNNLMGHASIV-AISSQLTSRLEGGATEEGDSEEDESSDE 202

Query: 55   -DNLLPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 112
             D  L ++F VGQ V   VL   D      GKR+I LSLR +    GL  + V     + 
Sbjct: 203  TDVNLKSMFKVGQYVRAYVLSTKDTATGGKGKRRIELSLRPNEANSGLETDDVVPNSTVM 262

Query: 113  AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVV 169
            A V S+E+ G ++  G+P   GFLP   +  +  ID   ++PG +    V     + K+ 
Sbjct: 263  ASVVSVEERGCVMDLGMPGLNGFLPNGEI--DPLIDQERLQPGAVFLCQVTG-KGSNKIA 319

Query: 170  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 229
             L+   D V           +I+  +PG +VS  V      G+    +     T D+ H 
Sbjct: 320  QLTLKQDKVGSTKAFPADATTINTFLPGTLVSVLVSDNEGRGLAGKIMGTLDATADLIHS 379

Query: 230  QNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLH------------NRA 275
                   + K+ Y    KV ARI+   PT++   VG++L P++L              + 
Sbjct: 380  GIGPNNVDLKSKYKVGSKVKARIICNFPTAKDPKVGVSLLPHILSLTQKRQDADTEVTKR 439

Query: 276  PPSHVKVGDIYDQSKVVRVDRGLGLLLD--IPSTPVSTPAYVTISDVAEEEVRKLEKK-- 331
            P   + +    ++  V  V+  +GL +D  IP        +V IS V + +V  L +   
Sbjct: 440  PLEVLPISSFVEKCTVRHVEADIGLFVDTGIP----GLGGFVHISRVKDGKVDALYESSG 495

Query: 332  -YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-----D 385
             YK G+  R R++G+  ++GL +   + S  E       DV  G VV G++  +      
Sbjct: 496  PYKVGTVHRGRVVGYNEMDGLFSISFEKSLLEQQYIRLEDVPIGSVVNGEIEKLVIKEQG 555

Query: 386  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKT 443
              G I++   G+       HMS+  +  P KKF+ G ++  RVL +   R  + +T KKT
Sbjct: 556  VTGLIIKIADGMSGFVSENHMSDIRLQHPEKKFREGMKVKARVLSLNFSRRQLRLTLKKT 615

Query: 444  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 503
            LV S+  ++ SY + +  + T G I K++ +G  ++FY  ++GF P SE+      +P+ 
Sbjct: 616  LVNSEAPVIKSYDDVSIGMKTLGTIVKVQPNGAHIQFYGRLRGFLPVSEMSEAYIRDPTE 675

Query: 504  MYHVGQVVKCRIMSSIPASRRINLSF-------MMKPTRVSEDDLVKLGSLVSGVVDVVT 556
             + VGQVV    +   P ++R  +S        + K T +     + +G +VS  V   T
Sbjct: 676  HFRVGQVVSVHALEVDPEAKRFIVSCKDPGAFGLEKQTALKN---LNVGDIVSAKVTQKT 732

Query: 557  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESSN--LL 613
             + + V ++     K  +P  HL D            I  G     L+VL+   +   ++
Sbjct: 733  EDQIFVELVDSQL-KAILPVGHLTDKSSSKNQYAWKRISAGQTLSNLMVLEKYENRRAII 791

Query: 614  LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AV 670
            LS K SL+ +AQ   L          +VV G+V NI  T  FV+F   L    P+ +   
Sbjct: 792  LSQKPSLVKAAQDKTLLKSFEDAKVGAVVQGFVRNITVTAVFVQFAANLHALLPKGRLPA 851

Query: 671  DGQ-RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 729
            D Q + D     Y  +S+   I+    E  RI         +  DA  ++      +   
Sbjct: 852  DAQSQPDFGLRKY--ESIEVRIISTIPEMKRI-------LVAPADAPVVEPENKKSKSST 902

Query: 730  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA-- 787
               +           +G   GS  + K+    D  + V   + SDV G I   Q+     
Sbjct: 903  KTSAPAPE-------DGLAFGSTAQAKITSIKDTQLNVQLVD-SDVQGRIDVSQIYDKWE 954

Query: 788  ----------TVESGSVIQAAILDV--AKAERLVDLSLK---TVFIDRFREANSNRQAQK 832
                            V++  +L V  AK  R +  S +   +V     + ++ +  A K
Sbjct: 955  DIPDPKDPLDKFNKKQVLRVKVLGVHDAKDHRFLPFSHRSAHSVLELTCKPSHLSSDAPK 1014

Query: 833  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQF 890
                 E    L V  T  A V  V   YL ++L P     I     S D +     +  F
Sbjct: 1015 PISLEE----LKVGDTHIAFVNNVTSQYLWVNLSPNVRGRISIMDASDDLSLLNDLEANF 1070

Query: 891  LNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 950
              G ++ A V A+   +   RL L  ++ + +E  +    K+  +      +  +IT++ 
Sbjct: 1071 PVGSALKARVTAVDPQNN--RLDLSARSANASEAITWTSLKQNMT------LPGKITKVN 1122

Query: 951  PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1010
              ++ +K      G +H+ ++ DD S V     S +K G  V   I+     P  K+   
Sbjct: 1123 ERQVLVKLSESVSGPVHLPDMADDYSTVDT---SKYKKGDIVRVSIV--DVDPSNKR--- 1174

Query: 1011 WELSIKPS--MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1068
              LS++PS  M + S +  K + +   ++ G  V G+V  V ++   + +   + A  F+
Sbjct: 1175 IRLSMRPSRIMSSTSPVVDKEITKITQLATGDIVRGFVKNVADKGLFVLLGGQVTA--FV 1232

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDN 1127
              S      L+E++  F I + V G V++++     L L L+    D   D T  +S ++
Sbjct: 1233 KISNLSDRFLKEWKDGFQIDQLVKGRVIALDAATNQLELSLKSSVVD--EDYTPPLSYND 1290

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
                I EG IV G + K+      ++V    ++ G  H +++ +  V            D
Sbjct: 1291 ----IKEGQIVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNPVK-----------D 1335

Query: 1188 PLSGYDEGQFVKCKVLEISRTVR 1210
                Y EG  VK +VLE+  T R
Sbjct: 1336 ATKLYKEGDKVKARVLEVDATKR 1358



 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/284 (39%), Positives = 173/284 (60%), Gaps = 15/284 (5%)

Query: 1536 ERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
            +R  E DA  P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR IAERA+++INI
Sbjct: 1498 DRTAELDAHGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREIAERAIKSINI 1557

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1653
            REE EKLN+WVAY NLE  YG+  ++ V  VF+RA QY D ++V+  L  +Y ++E+ K 
Sbjct: 1558 REETEKLNVWVAYLNLEVAYGS--KQTVEDVFKRACQYNDEQEVYERLASIYIQSEKLKE 1615

Query: 1654 ADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFISQT 1710
            ADEL   M+KKF   S  VW      L   K +    +A++ RA   L  H     +S+ 
Sbjct: 1616 ADELFEAMLKKFGAKSPSVWTNYAHFLHVTKNEPARARALLPRATQQLDSHNGQNIVSRF 1675

Query: 1711 AILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLFERA 1764
            A LEF+  NG  +RGR+MFEG+L+ +PK+ DLW+  LD EI +     D   +R +FER 
Sbjct: 1676 AALEFRSPNGEPERGRTMFEGLLAAWPKKGDLWNQLLDLEIGIASSSADYTAVRDVFERR 1735

Query: 1765 ISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
              +  L P++ +  F+++  +E+ +  + + + V  KA E+  +
Sbjct: 1736 TRVKGLKPQQAEKWFRRWAAWEEKLDPKGK-DKVMAKAQEWAAA 1778



 Score = 77.0 bits (188), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 113/479 (23%), Positives = 201/479 (41%), Gaps = 77/479 (16%)

Query: 981  NLFSNFKIGQTVTARIIAK---SNKPDMKKSFL--------------WELSIKP-SMLTV 1022
            +L S +K+G  V ARII     +  P +  S L               E++ +P  +L +
Sbjct: 387  DLKSKYKVGSKVKARIICNFPTAKDPKVGVSLLPHILSLTQKRQDADTEVTKRPLEVLPI 446

Query: 1023 SEIGSKLLFEECDVSIGQRV-TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1081
            S    K      +  IG  V TG    +      + ISR    ++  L  +  P ++   
Sbjct: 447  SSFVEKCTVRHVEADIGLFVDTG----IPGLGGFVHISRVKDGKVDALYESSGPYKVGTV 502

Query: 1082 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1141
             R   +G      + SI+ EK LL       Q  I  + V I           G +V G 
Sbjct: 503  HRGRVVGYNEMDGLFSISFEKSLLE------QQYIRLEDVPI-----------GSVVNGE 545

Query: 1142 ISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1198
            I K++    GV GL+++I   + G V    + +I +  P     E +F       EG  V
Sbjct: 546  IEKLVIKEQGVTGLIIKIADGMSGFVSENHMSDIRLQHP-----EKKF------REGMKV 594

Query: 1199 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1258
            K +VL ++ + R    + L+L+ +L              V++    ++  +D+S  M   
Sbjct: 595  KARVLSLNFSRR---QLRLTLKKTL--------------VNSEAPVIKSYDDVSIGMKTL 637

Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1318
            G +  V   G  I    +L   + +S +S+ Y+  P + F +G++V+   L V+P +KR 
Sbjct: 638  GTIVKVQPNGAHIQFYGRLRGFLPVSEMSEAYIRDPTEHFRVGQVVSVHALEVDPEAKRF 697

Query: 1319 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1378
             V+ K  D       +   L NL+VGDIV  ++ +     +F+ + ++ L  +  V  L+
Sbjct: 698  IVSCK--DPGAFGLEKQTALKNLNVGDIVSAKVTQKTEDQIFVELVDSQLKAILPVGHLT 755

Query: 1379 EDHVDNIETIYR---AGEKV-KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1433
            +      +  ++   AG+ +  + +L+  + +R I L  K S  K   D   + S E++
Sbjct: 756  DKSSSKNQYAWKRISAGQTLSNLMVLEKYENRRAIILSQKPSLVKAAQDKTLLKSFEDA 814



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 145/327 (44%), Gaps = 37/327 (11%)

Query: 152  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 211
            G  L+  V ++D     + LS+     S+ +T     +  ++ +PG     ++  + E  
Sbjct: 1073 GSALKARVTAVDPQNNRLDLSARSANASEAIT--WTSLKQNMTLPG-----KITKVNERQ 1125

Query: 212  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 271
            V++      +G V +  + + + T +  + Y +   V   I+ VDP+++ + L++ P  +
Sbjct: 1126 VLVKLSESVSGPVHLPDMADDYSTVD-TSKYKKGDIVRVSIVDVDPSNKRIRLSMRPSRI 1184

Query: 272  HNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
             +   P         + +  GDI         D+GL +LL    T     A+V IS++++
Sbjct: 1185 MSSTSPVVDKEITKITQLATGDIVRGFVKNVADKGLFVLLGGQVT-----AFVKISNLSD 1239

Query: 323  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGM 375
              +++ +  ++    V+ R++        AT  L+ S    +V        +++D+K G 
Sbjct: 1240 RFLKEWKDGFQIDQLVKGRVIAL----DAATNQLELSLKSSVVDEDYTPPLSYNDIKEGQ 1295

Query: 376  VVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
            +V G V  V+ FGA  +V     V  LC    M++  +    K +K G ++  RVL V +
Sbjct: 1296 IVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNPVKDATKLYKEGDKVKARVLEVDA 1355

Query: 434  --KRITVTHKKTLVKSKLAILSSYAEA 458
              +RI    K +  + +   + S +EA
Sbjct: 1356 TKRRINFGLKPSFFEDEDTDMDSGSEA 1382


>gi|323508229|emb|CBQ68100.1| related to RRP5-processing of pre-ribosomal RNA [Sporisorium
            reilianum SRZ2]
          Length = 1557

 Score =  214 bits (546), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/292 (40%), Positives = 181/292 (61%), Gaps = 7/292 (2%)

Query: 1520 KKKEKEEREQEIRAAEERL---LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD 1576
            ++KEK + +    A E+ L   L   AP +  +FERL+  SPNSSF+WI++M+F L ++D
Sbjct: 1250 QRKEKAKAKSRKSALEDDLTADLASKAPESATDFERLLLGSPNSSFLWIQFMSFALQLSD 1309

Query: 1577 VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1636
            V++AR+IA RAL+ IN REE E++N+W+A  NLEN YG+  ++ +   F+ A+Q  D   
Sbjct: 1310 VDQARTIARRALKVINYREEQERMNVWIALLNLENTYGS--DDTLDATFREAVQANDGFT 1367

Query: 1637 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQ-RAL 1695
            ++L L+G+ E   +   ADE   K   K+    + W+   +  L+ ++      +  RA+
Sbjct: 1368 MYLKLIGILEGAGKLDAADETWVKAKGKYSTQPEFWIEYARFFLRTRRADAARALLPRAM 1427

Query: 1696 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1755
             +L +  H + I+  AI EFK G A+RGR++FEG++  YPKR DLW  YLDQE RL +  
Sbjct: 1428 QALDKRAHTQTITAFAINEFKLGDAERGRTIFEGLVDSYPKRLDLWWQYLDQESRLPENQ 1487

Query: 1756 L-IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
              +R LFER ++L L  KK K L KK+LEYEK+ G+ +  + V  +A E+V+
Sbjct: 1488 AQVRNLFERTLTLKLTAKKGKSLLKKWLEYEKAHGDAKSQQKVLNRAKEFVD 1539



 Score =  145 bits (367), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 147/560 (26%), Positives = 255/560 (45%), Gaps = 53/560 (9%)

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSLETV 105
           L  +FHVGQ +   V+Q+       G+            R++ LSL   L+  G+S+  +
Sbjct: 236 LRELFHVGQWLVASVVQVRSGDVAKGRPTREGGEYEKESRRVELSLAPHLVNAGVSVSDL 295

Query: 106 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE--------NSGIDVKPGLLLQG 157
             G  L+A + S+EDHGY+L  GL   +GF+P  + A+         +G  ++ G ++  
Sbjct: 296 DTGATLSAAISSVEDHGYMLDAGLAELSGFVPFTDAAKLPASFHAGKNGKSLQVGSVVFA 355

Query: 158 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
            +  I   ++    + DP TV     K     SI  ++PG +    + + L  G+ +   
Sbjct: 356 KITRIPENKRSFDATLDPKTVRTSPIK--HAPSITAILPGTLTKVLITASLPTGLNVKLF 413

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 264
             F  T+D FHL       +  + Y +  K  AR+L+  + P S           R  GL
Sbjct: 414 GMFDATIDRFHLPELPEGKDIPDVYKEGSKHVARVLWDLLAPPSAALQGDNPDHERKFGL 473

Query: 265 TLNPYLLHNRAPPS-------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 317
           +L P +L   AP +       H        +  VV+     GL++ +  T +    +V I
Sbjct: 474 SLAPQVLALEAPVAKDDQLLQHAFPIGAALKVTVVQTINDWGLIVSVHDTDLR--GFVHI 531

Query: 318 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 374
           S V+++ V  L      + +GS  + R++G    +      LKAS  E      S+V+ G
Sbjct: 532 SQVSDDHVVALPPSSGPFAKGSVHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVG 591

Query: 375 MVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
            VV   +I +    AI +Q  G V  +    H ++ ++ +P K+FK G ++  RV+ V  
Sbjct: 592 EVVNASIIKLGLPNAIFLQLQGHVDGVVFANHFADVKLTQPEKRFKPGLQVKARVMDVDP 651

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
              RI +T KK+LVKS L I++S  +A   ++T+  + +++ +   V  + G++   P  
Sbjct: 652 NRNRIVLTLKKSLVKSDLPIVASMQDARVGVVTNATVFRVQTNSLIVSLFGGLRALVPGR 711

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE--DDLVKLGSLV 548
           E+  D   +  S +  G+VVK RI      ++R+  S     P  +++   D V++G  V
Sbjct: 712 EVSEDDFNDVKSGFGEGKVVKMRITEVDYENQRLVGSIKQASPEYLAKLNVDAVEVGETV 771

Query: 549 SGVVDVVTPNAVVVYVIAKG 568
           +G V  V    VV+ ++  G
Sbjct: 772 TGKVAAVHKEVVVLTLVPSG 791



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 131/609 (21%), Positives = 238/609 (39%), Gaps = 66/609 (10%)

Query: 250  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 309
            AR++   PT R + L+L   +L  +              + ++++     + L +     
Sbjct: 557  ARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVGEVVNASIIKLGLPNAIFLQLQG--- 613

Query: 310  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVF 366
                 V  +  A+ ++ + EK++K G  V+ R++            LK S  +    +V 
Sbjct: 614  HVDGVVFANHFADVKLTQPEKRFKPGLQVKARVMDVDPNRNRIVLTLKKSLVKSDLPIVA 673

Query: 367  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE--FEIVKPGKKFKVGAEL 424
            +  D + G+V    V  V +   IV   GG++AL P   +SE  F  VK G  F  G  +
Sbjct: 674  SMQDARVGVVTNATVFRVQTNSLIVSLFGGLRALVPGREVSEDDFNDVKSG--FGEGKVV 731

Query: 425  VFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY- 481
              R+  V  +++R+ V   K      LA L+  A      +T G +  + K    +    
Sbjct: 732  KMRITEVDYENQRL-VGSIKQASPEYLAKLNVDAVEVGETVT-GKVAAVHKEVVVLTLVP 789

Query: 482  NGVQGFAPRSELGLDPGCEPSSMYHV--------GQVVKCR--------IMSSIPASRRI 525
            +GV+     + L       P ++           G VV  +        +   +  S++ 
Sbjct: 790  SGVRALLSLAVLAAMRSTTPEALLETLEEDQEIDGLVVSVKNPAKGIVIVADKVRESKKA 849

Query: 526  NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLE 584
            N     +    +    VK G++V G V +   +  +  V+A G  ++ T+    LAD   
Sbjct: 850  N-----EGASSTTSGQVKQGAVVQGRV-IQKNDKYLDCVVALGTATRATLQMTDLADDFS 903

Query: 585  HATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLIN---SAQQLPSDASHIH---PN 637
                + S   PG      +V L     + ++S + S +N   SAQ +  + + I      
Sbjct: 904  ANITLPS---PGQTLQCYIVSLKPNGKSAVISTRPSRVNPSTSAQIVDPEITSISDLIKG 960

Query: 638  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
              + G+V  I   G FV    +L       +  D    D    + VGQ V   ++DVN+ 
Sbjct: 961  QKIRGFVKAITNVGLFVNVGRKLDARVQVRELFDEFVRDWKTRFRVGQLVEGTVMDVNAH 1020

Query: 698  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
            +  + LSLK     ST  S         E+     +  H+    K +  F +G  ++G V
Sbjct: 1021 SNEVELSLK-----STPGSIKPRAEREAER-----AQAHDAKRPKRLTDFSVGDKVKGFV 1070

Query: 758  HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVD 810
                DFGV V   + ++V G    ++L+    +        G  ++A +L + + ++ + 
Sbjct: 1071 KNVIDFGVFVQI-DGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRINEEKKKIS 1129

Query: 811  LSLKTVFID 819
              LK  + D
Sbjct: 1130 FGLKPSYFD 1138


>gi|401409816|ref|XP_003884356.1| hypothetical protein NCLIV_047560 [Neospora caninum Liverpool]
 gi|325118774|emb|CBZ54325.1| hypothetical protein NCLIV_047560 [Neospora caninum Liverpool]
          Length = 3075

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 155/522 (29%), Positives = 259/522 (49%), Gaps = 61/522 (11%)

Query: 1332 QSEINNLSNLHVGDIVIGQIKRVESY--GLFITI------------ENTNLVGLCHVSEL 1377
            Q +   L  L  GD+V G++ +++      +I++            E  +L+ L      
Sbjct: 2560 QEKRARLQRLQKGDLVRGRVTKIDRAQGKAWISLDAEVFDSEEGASEEEDLLALAGEESS 2619

Query: 1378 SED--HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
             ED   +D      +  + ++V      ++K+    G K    ++++       +  +DE
Sbjct: 2620 DEDMTGLDRPHATRKNRQAMEVDFEDEGRKKKHREAG-KQEGSEDESPGAVDGGDSSADE 2678

Query: 1436 AIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD 1495
              E  GS++        S    +    + +GG    A  ES   +   E  LD  QPD++
Sbjct: 2679 GEEAGGSWSAGISASAHSWGWSETGPSANEGG----ANGESDVLMSDSEGELDTTQPDLN 2734

Query: 1496 NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVR 1555
            +    ++  +  A+   E+  R  +++ +   +   R+  E       PR+P++FERLV 
Sbjct: 2735 DADEDDEKKSKAARRRHEEEARRQEEETRRLEDNAGRSWMED------PRSPEDFERLVL 2788

Query: 1556 SSPNSSFVWIK--------------------YMAFMLSMADVEKARSIAERALQTINIRE 1595
             + NS+ VWI+                    YMA+ L + +++ AR +AERA+Q IN RE
Sbjct: 2789 VNGNSAAVWIRQVEISGDSAHAESRRRQAMNYMAYYLKLNELQMARQVAERAIQHINYRE 2848

Query: 1596 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1655
            E E+ ++W+AY NLE  YG+     V ++F+RA+QY D KK+H  +  +YE+  Q   A 
Sbjct: 2849 EQERSSVWIAYLNLECVYGD----RVDEIFKRAVQYNDSKKIHYQMTFIYEKARQLDKAR 2904

Query: 1656 ELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFISQTAIL 1713
            ++  K  +KF  S K+W+R +  L         A  ++ +AL  LPR KHI+F++  A L
Sbjct: 2905 QMCEKCCEKFPESQKMWVRHLTLLYTALDAASAARDLMLQALFRLPRRKHIEFVATCARL 2964

Query: 1714 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--------GDVDLIRGLFERAI 1765
            E+K+G  +RG++ FE +L+E+PKRTD+WS Y+D  I           ++  IR LFER  
Sbjct: 2965 EYKHGSKERGQTYFEKLLAEHPKRTDIWSQYVDAHIAAHTPPRCVPANLQSIRVLFERTT 3024

Query: 1766 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            SL L  +KMKF F ++L +EK  G  E    V+ KA ++V+S
Sbjct: 3025 SLQLKLRKMKFFFTRWLGFEKQHGTAETQARVRAKARQFVQS 3066



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 153/374 (40%), Gaps = 118/374 (31%)

Query: 1164 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR----------TVRGTF 1213
            VH  E+ +  VSDP+   D            GQ VK K+L I++            R   
Sbjct: 2264 VHVAEVLDDWVSDPVKRLD---------LKVGQAVKVKILPIAQRGENGRTDKTASRSGL 2314

Query: 1214 HVELSLRSSL----DGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
             +E SLR S     +G+ S    S DL +D         + E+L     V G V +    
Sbjct: 2315 PLEASLRLSQVEAKEGLRSDALRSGDLRSDA-------LRFENLEVGQEVSGLVVSSGQA 2367

Query: 1268 GCFIMLSRKLDAKVLLSNL--SDGYVESPEKE--------------------------FP 1299
            G F+ +SR L  ++ L  L   +    +P K                           FP
Sbjct: 2368 GVFVAVSRSLTLRIKLQKLLSENAGATTPAKTRGTEAAESPAGVVASRLVTGDEAKALFP 2427

Query: 1300 IGKLVAG-RVLSVEPLSKRVEVTLK------------------TSDSRTASQ-------- 1332
            +G+LV   R+++++P ++R+E +L+                  T +S  A Q        
Sbjct: 2428 VGRLVQNIRIVALDPETRRIEGSLRPSSVKKRTDGEGADGTGETGESAKAHQKDEKARPG 2487

Query: 1333 ---------SEINNLSN-----LHVGDIVIGQIKRVESYGLFITIEN--------TNLVG 1370
                     SE    +N     L+VGD++ G+++ +E++G+F+ +E+         +L  
Sbjct: 2488 FENLTARADSEAKRTANRLLEKLNVGDVIDGRVRGLETFGVFVRLEDGEDGDQDRISLDV 2547

Query: 1371 LCHVSEL-SEDHVDNIETIYR--AGEKVKVKILKVDKEKRRISLGMKSSYFKN------D 1421
            LCHVSE+   D  +    + R   G+ V+ ++ K+D+ + +  + + +  F +      +
Sbjct: 2548 LCHVSEMGGNDWQEKRARLQRLQKGDLVRGRVTKIDRAQGKAWISLDAEVFDSEEGASEE 2607

Query: 1422 ADNLQMSSEEESDE 1435
             D L ++ EE SDE
Sbjct: 2608 EDLLALAGEESSDE 2621



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 48/180 (26%)

Query: 5   NISAGMKLWGVVAEVNEKDLVICLPGGLRGL---------------------ARA-ADAL 42
           ++S G  L GVVAE++  +L++ LP G+ G                       RA ++A 
Sbjct: 141 DVSPGSLLLGVVAEIHANELIVHLPYGMMGYVPRTQAQEATPGSTPGASASYGRAVSEAE 200

Query: 43  DPILDNEIEAN------------EDNLLP-TIFH-VGQLVSCIVLQLDDDKKEI-----G 83
           D   D   EAN              N+LP T  H VGQ+V  +VL    + + +      
Sbjct: 201 DFEGDATWEANAARGRGSKAAGGHPNMLPLTRSHFVGQIVQTVVLGGGREGRNVEGEGDA 260

Query: 84  KRK-------IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL 136
            R+       + LSLR SL   GLSL+ +   MV+ A + ++E+HGY+L FG+   +GFL
Sbjct: 261 HRRSPQSSSVLLLSLRPSLFNAGLSLDALAPSMVVPASIAAVEEHGYMLSFGVHELSGFL 320


>gi|84999534|ref|XP_954488.1| pre-rRNA processing protein [Theileria annulata]
 gi|65305486|emb|CAI73811.1| pre-rRNA processing protein, putative [Theileria annulata]
          Length = 297

 Score =  214 bits (544), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 120/293 (40%), Positives = 180/293 (61%), Gaps = 21/293 (7%)

Query: 1530 EIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1586
            +IR  E+R+ +K+  R P+   +FERLV ++  SS VWI YMAF ++  D+E AR   +R
Sbjct: 2    KIRELEDRIADKEWMRNPNSVMDFERLVVTNSRSSAVWIAYMAFYINSGDIEMARKTVKR 61

Query: 1587 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1646
             L+ I+ RE  EK+N+WVAY N+E  YG    + V+++F++A+QY D K +HL ++ ++ 
Sbjct: 62   GLKAIDFREMAEKMNLWVAYLNMECIYG----DKVMEIFKQAIQYNDSKSIHLKMINIFV 117

Query: 1647 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQR---ALLSLPRHKH 1703
               Q + A E+  K IKKF  S KVWL  + RLL +  +  +A  Q     +  +P+ K 
Sbjct: 118  NNNQLEKAKEICEKAIKKFHKSKKVWLSYL-RLLYENMKDFEAGRQLHKVCITRIPQRKR 176

Query: 1704 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG----------D 1753
            I   S TA+LE+K+G  + G+  FE IL E PKR D+W+ YL   I+L            
Sbjct: 177  ILITSSTALLEYKHGSPEMGKMYFENILLENPKRMDIWNQYLTAHIKLNMDESKTQKSEG 236

Query: 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            +  +R LF+RAI+L L PKKMK +F K+LE+E + G E+  E V++KA++YVE
Sbjct: 237  LKNVRNLFDRAITLDLKPKKMKIIFSKWLEFECAYGTEKSKESVQKKALKYVE 289


>gi|385305107|gb|EIF49101.1| part of small ribosomal subunit processosome (contains u3 snorna)
            [Dekkera bruxellensis AWRI1499]
          Length = 344

 Score =  213 bits (541), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/266 (40%), Positives = 170/266 (63%), Gaps = 4/266 (1%)

Query: 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1602
            AP +  +FERL+  +PNSS +WI+YM+F L + ++EKAR I +RAL+TIN REE+EK+N+
Sbjct: 75   APESVSDFERLLLGNPNSSIMWIQYMSFQLQLGEIEKARKIGDRALKTINYREESEKMNV 134

Query: 1603 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1662
            W+A  NLEN +G   E+ +   F RA QY D   +H  L  +Y  +++ + AD +   + 
Sbjct: 135  WIALLNLENMFGT--EDTLKDTFTRACQYMDAYTMHRKLASIYISSDKFEEADSMFKVIC 192

Query: 1663 KKFKHS-CKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1720
            KKF +    VW+   + L+++ + +    V+ +AL  L +  H++ + + A LEF  G  
Sbjct: 193  KKFGYDHVIVWVAYGRFLIERSKPDEAHQVLAKALQVLTKRSHVEVVRKFAQLEFSEGDP 252

Query: 1721 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1780
            ++GRS+FEG+LS+ PKR D+W++Y+DQEI+ G  + +  LFER  +  L  K+ KF F K
Sbjct: 253  EQGRSLFEGLLSDVPKRLDIWNVYIDQEIKNGXKNKVEDLFERVSARKLTKKQAKFFFGK 312

Query: 1781 YLEYEKSVGEEERIEYVKQKAMEYVE 1806
            +L YE   G+E+  +YVK KA EY +
Sbjct: 313  WLSYEGKNGDEKASDYVKAKAAEYAQ 338


>gi|312088778|ref|XP_003145991.1| hypothetical protein LOAG_10419 [Loa loa]
          Length = 481

 Score =  212 bits (540), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 191/302 (63%), Gaps = 5/302 (1%)

Query: 1508 AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIK 1566
            A  I+E+N    K++ + E E+++   E ++LE +  P   ++F+RLV  +PNSS +WI+
Sbjct: 173  ADNIEEQNRPKTKEELQIEEEKKLINRERKILEANWIPDNTNDFDRLVAGTPNSSILWIR 232

Query: 1567 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1626
            Y+ F L   DVEKAR++A+RAL  IN REE+E  N+W AY NLE  +G    E++  VF 
Sbjct: 233  YITFFLEQNDVEKARAVADRALSVINFREEDEIFNVWTAYLNLEGNFGT--SESLKAVFD 290

Query: 1627 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS-CKVWLRRVQRLLKQQQ- 1684
             A++  D  K++  ++ +Y+   + +  D+LL +M+K+F+H    VW    Q LL+ ++ 
Sbjct: 291  NAIKNTDALKMYKQMVKIYQNLGKIQELDDLLDEMLKRFRHDDLDVWFIYGQHLLETKRP 350

Query: 1685 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1744
            +  + ++++A+  L R  H+  +S+ A LEFK G  ++ +++FE IL+ YPK+TD+W++Y
Sbjct: 351  DKARDLMKKAINCLSRKHHVTILSRFAQLEFKFGDMEQSKTIFENILNSYPKKTDVWTVY 410

Query: 1745 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804
            +D  I++G  +  R L ER  +L L   K++  FKK++  E+  G+EE+   VK++A+ Y
Sbjct: 411  IDLLIKVGKFEDARQLLERVTALKLSTHKIRLFFKKWVGLEQMHGDEEQQNNVKERALHY 470

Query: 1805 VE 1806
            ++
Sbjct: 471  LQ 472


>gi|307177534|gb|EFN66645.1| Protein RRP5-like protein [Camponotus floridanus]
          Length = 1398

 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/277 (38%), Positives = 172/277 (62%), Gaps = 3/277 (1%)

Query: 1531 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1590
            IR  EE L   + P + D+F++LV SSP+SS VW++YMA+ L   +++KAR++ +RA++T
Sbjct: 1118 IRQREEALASNEIPNSIDQFDKLVLSSPDSSLVWLQYMAYHLQATEIDKARAVVKRAIKT 1177

Query: 1591 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1650
            IN REENE+LN+W A+ NLE+ +G    E++  VF+ A+Q  D  K++  +L ++    +
Sbjct: 1178 INFREENERLNVWNAWLNLESRFGTL--ESLNDVFREAVQNNDAFKIYTYMLTVHADASR 1235

Query: 1651 NKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQ 1709
                 +L+  +I KFK   + W+      LK   +E  + ++QRAL SLP  +H+  + +
Sbjct: 1236 MIELQKLVATIIGKFKQDPETWISCGAAFLKIGLKEKSRYIMQRALQSLPASQHVNLLVR 1295

Query: 1710 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1769
             A LE K G  +R +++FE IL  YPKR D+WS Y+D  I+  ++D+ R + ERA   +L
Sbjct: 1296 FANLENKLGDKERAQTLFENILCSYPKRVDVWSCYIDCLIKSKNIDIARKVLERACFQTL 1355

Query: 1770 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            P +KMK LF K+  +E+  G  E +  + Q A +YVE
Sbjct: 1356 PVRKMKTLFTKFKNFEEKYGTPETVARIVQMAADYVE 1392



 Score =  157 bits (398), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 150/610 (24%), Positives = 288/610 (47%), Gaps = 54/610 (8%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN-----EIEANEDNLLPT 60
           GM + G ++ V+E DL+I +PGG+ G   +   +++   +L N      I++NE   LP 
Sbjct: 64  GMTVLGRISRVSEYDLIISIPGGILGHVEITNLSESYTNLLQNIISTKAIQSNEFKPLPD 123

Query: 61  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 120
           +++ G  V C V  ++      GK    LSL   L+ + +    + +   +   +KSIED
Sbjct: 124 LYNPGDYVICYVKNINPQ----GKWLYNLSLEPQLINQNVHNSYLVKNAKIVCTIKSIED 179

Query: 121 HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR--KVVYLSSDPDTV 178
           HGY++  G+ S   FL   ++ +    + K    L  ++  ++      V+ LS+    +
Sbjct: 180 HGYVVDTGIASVRAFLATKDVDK----EKKYCNQLLCIINEVETANYSSVIKLSAKRKKI 235

Query: 179 SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 238
           +     D+   S+D+L PG  +S  V  IL NG+ ++F     G ++  +L N       
Sbjct: 236 NNVSIHDIA--SLDVLAPGTKLSLCVAKILSNGLQVTFGKNNIGYINQIYLDNPLSM--- 290

Query: 239 KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGL 298
              Y ++ +V   +L++ PT +    +L    L +++    +  GDI  ++KV+  +   
Sbjct: 291 ---YIENMEVTGTLLYILPTVKLAYFSL----LTDKSEKEKLSKGDIIKKAKVLYKESN- 342

Query: 299 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 358
           G++L+I  + +     +  ++V+ +   K+  ++K+GS  + RIL +  +E L    ++ 
Sbjct: 343 GIILNISESGLRGFVSLVKTNVSFD---KIPTEFKQGSTHKCRILAYNWMEHLYVCTMED 399

Query: 359 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKALCPLPHMSEFEIVKPGK 416
              +   F+ SD+  G ++   + ++D     +    G  +  + P+ H+S+  +     
Sbjct: 400 EILKQKYFSSSDLNCGDIITVTITSIDKGSGYMHVQAGNILGFVSPM-HVSDSGL-SALN 457

Query: 417 KFKVGAELVFRVLGVKSKR-----ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 471
           K K+G  +  RVL +K+       +  T K++L+KSKL +L    +A   L  HG ITKI
Sbjct: 458 KMKIGDSIEARVLDLKTSNDNNVNVIFTLKQSLIKSKLPVLHDIHKAQCGLEYHGTITKI 517

Query: 472 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531
           +K+G  VRFY  ++G+  RS L        +  Y +GQ +   I S       I L  + 
Sbjct: 518 DKNGLLVRFYGNIRGWVSRSTLN-SKTHNMNWNYSIGQTITVCIES--IEKYEIKLKIVT 574

Query: 532 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV-IAKG----YSKGTIPTEHLADHLEHA 586
           +  +   ++   +G ++ G   V+  +   VY+ I +G     +   +P  H+A  +E  
Sbjct: 575 EKQKQQTENF-SIGEMIEGT--VIESSIKGVYLRIHRGNDENVTTAFLPAGHIAPCIEIG 631

Query: 587 TVMKSVIKPG 596
           +++ S   PG
Sbjct: 632 SLLASKYNPG 641



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 30/220 (13%)

Query: 606 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 665
           ++ + N++ + K SLI S   +  D          HG +  I + G  VRF G + G+  
Sbjct: 476 NDNNVNVIFTLKQSLIKSKLPVLHDIHKAQCGLEYHGTITKIDKNGLLVRFYGNIRGWVS 535

Query: 666 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 725
           RS  ++ +  +++  Y +GQ++                     C  S +   ++   + E
Sbjct: 536 RS-TLNSKTHNMNWNYSIGQTI-------------------TVCIESIEKYEIKLKIVTE 575

Query: 726 EKIAMLQSSKHNGSELKWVEGFIIGSVIEG---KVHESNDFGVVVSFEEHSDVYGFITHH 782
           ++    +    N S  + +EG +I S I+G   ++H  ND  V  +F     +   I   
Sbjct: 576 KQ----KQQTENFSIGEMIEGTVIESSIKGVYLRIHRGNDENVTTAFLPAGHIAPCIEIG 631

Query: 783 QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
            L  +    G VI A +     +   + LS   V  +R+R
Sbjct: 632 SLLASKYNPGDVISALVFATKPS---IILSRTFVTQERYR 668


>gi|149247299|ref|XP_001528062.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146448016|gb|EDK42404.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1863

 Score =  211 bits (537), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/237 (45%), Positives = 156/237 (65%), Gaps = 12/237 (5%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1610 LNTRAPQSTADFERLLIGNPNSSILWMNYMSFNLQLSEVDKAREIGERALETINYREEQE 1669

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLNIW+A  NLEN +G+  EE++ KVF+R+ QY D   +H  L+ +Y  +E+   A +L 
Sbjct: 1670 KLNIWIAMLNLENTFGS--EESLEKVFKRSCQYMDSFVMHQKLVNIYIMSEKYDAAQDLF 1727

Query: 1659 YKMIKKF-KHSCKVWLRRVQRLLKQQQE--GVQAVVQRALLSLPRHKHIKFISQTAILEF 1715
              M+KKF K     W+     LL Q+++   V  ++ RAL +LP+  HI+ + + A LEF
Sbjct: 1728 KVMVKKFGKEHVSTWVLYASFLLDQEEQLTKVHELLSRALQALPKRDHIEVVRKFAQLEF 1787

Query: 1716 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-------IRGLFERAI 1765
              G A++ RS+FEG++++ PKR DLW++Y+DQEI+L D D        IR LFER I
Sbjct: 1788 AKGDAEQARSLFEGLIADAPKRIDLWNVYIDQEIKLHDKDEGEDNVLNIRDLFERVI 1844



 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 184/697 (26%), Positives = 322/697 (46%), Gaps = 53/697 (7%)

Query: 52  ANEDNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEG 108
           A E  L P   ++F VG  +   V++ D+ +K   KR+I LSL   L+   +  E +  G
Sbjct: 315 AKEKKLFPDLKSMFQVGSWLKAKVVESDNSQK---KRRIELSLEPKLVNANIEDEDLIPG 371

Query: 109 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRT 165
            V+   VKS+EDHG IL  G   F+ F+    L +N+G++   ++ GL+L  V+ S    
Sbjct: 372 NVILCAVKSVEDHGVILDTGFEKFSAFMSNKEL-KNAGLEPASLQEGLVLSCVLVSQPSG 430

Query: 166 R----KVVYLSS--DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 219
           R    K V L++   P  VS          S+D + PG++V+  V  I   G++      
Sbjct: 431 RIITVKPVSLAAGKKPAVVSTIT-------SVDSIQPGILVNALVSDITSEGIITRVFGL 483

Query: 220 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAV------GLTLNPYL 270
             GT+ I  +QN F T + K+ Y     +  RIL +   + T + +       ++L+ + 
Sbjct: 484 VDGTISIAQIQN-FNTADLKHKYAIGSTIKTRILAILEKEGTKKLLLSMLPTTMSLDNHQ 542

Query: 271 LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
             N+       +G I+D+ +V+ +D+   + ++  S   S    +  S++  +   K   
Sbjct: 543 KQNQEALEAYPIGFIFDEVEVLGLDKSY-VYVNFGSK--SLFGQIHNSNLGGD---KSLL 596

Query: 331 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSF 387
            Y  GS  + R+LGF  ++ L                  D+  G  +   +V+ V  D+ 
Sbjct: 597 NYSVGSKHKARVLGFNTVDNLLVLTFDDKIINAEYLNVRDIPLGAFLPNCEVVKVLPDNG 656

Query: 388 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK- 446
           G  V+       L P   MS+ ++V P +KF+ G+++  R+L  + K   +T +K LV  
Sbjct: 657 GLSVKINDEFMGLVPFNQMSDIKLVYPERKFRAGSKVKGRLLTHRGKTPLITLRKALVNL 716

Query: 447 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 506
               I+  + +A     T+  + K    G  V F+  ++ F P++E+      + S    
Sbjct: 717 EDDEIILQFEDAKVGFKTNATVEKFIHGGAIVSFFGSLRAFLPKTEISETFVDDASKFLK 776

Query: 507 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG-----VVDVVTPNAVV 561
           +GQ+VK +I+      +R+ ++ M + + +S+    ++  L+SG      + V   N  V
Sbjct: 777 LGQIVKVKILDIKEDQKRVVVT-MKQSSELSDAQKTEISQLLSGRSIINAIVVEKKNNAV 835

Query: 562 VYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYS 619
           +  +     +G I    L+D + E    M   ++   +   L++  D ++  ++ +AK S
Sbjct: 836 LIELEGSNLRGVINDGQLSDGNYEQNRAMFKKLEISSKIRALVLEKDLKARTIIATAKKS 895

Query: 620 LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
           +I +A++  LP D   I PN VV GYV ++   G FV F GRLTG      A      DL
Sbjct: 896 MIEAAEKNALPIDFDDIQPNKVVKGYVKSVTNLGLFVSFTGRLTGLVLAKYATANANEDL 955

Query: 678 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
           SK ++  QS+   +L V++E  R  L+L  S   S D
Sbjct: 956 SKKFHKYQSLTCRVLSVDTENKRFLLALLNSTNDSGD 992



 Score = 46.2 bits (108), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 53/358 (14%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI-----DVKP-GL 153
            L L+ +     L  +V +I D G++     PS  G +   +L  +  +     +  P G 
Sbjct: 1115 LKLDDITLEQELLCFVNNI-DRGFVWVSISPSVRGRISFMDLTNDGSVFQGFENKYPIGT 1173

Query: 154  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL----E 209
             +Q  V++ID+  K + L S  + VSK     ++ + I    P  +V  +   +L    +
Sbjct: 1174 AIQAKVKNIDQEHKSLSLISRDNHVSK-----VEDVQIGQTYPARIVKVKDSYVLVDLGD 1228

Query: 210  NGVMLSFLT-----YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 264
              +  SF+T     Y      +FHL          N+Y     V A++L +D  +  + +
Sbjct: 1229 KVIASSFITDALNDYSDKLAHVFHL----------NEY-----VAAKVLDIDVENNKIAV 1273

Query: 265  TLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTIS 318
             L        A    +   D   + +VV+     G + +I S  V         A V +S
Sbjct: 1274 MLRNEESSAAASDKTINSVDDLSRGQVVK-----GFVKNIASNGVYVSLGRCVHALVRVS 1328

Query: 319  DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGM 375
            D+++  ++  +K +K    V  +I+  +  +G     LK S   G   ++  + D+  G 
Sbjct: 1329 DLSDSYLKDWKKFFKPAQSVIGKIINCKE-QGKVLMTLKESEVNGDLKILKNYDDLVVGE 1387

Query: 376  VVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
            V +G V  V  FG  V+  G   +  LC    +SE ++      F  G  +  ++L V
Sbjct: 1388 VFEGTVTKVTDFGVFVKLDGTINISGLCHHSEISENDVSNIASLFGEGDRVKVKILKV 1445


>gi|157127501|ref|XP_001655011.1| programmed cell death protein 11 (pre-rrna processing protein rrp5)
            [Aedes aegypti]
 gi|108872936|gb|EAT37161.1| AAEL010827-PA [Aedes aegypti]
          Length = 1542

 Score =  210 bits (535), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 1509 KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKY 1567
            K ++ K    A K+E    EQ IR  E+ L +    P TPD+F+R V S PNSS +WI+Y
Sbjct: 1239 KRLNAKERFEAMKQE----EQRIRQIEDELADASVDPHTPDQFDRQVLSQPNSSLLWIRY 1294

Query: 1568 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1627
            M F +  A+VEKAR++A RAL+TIN REE E+LN+W+A  NLE  Y     E   +V Q 
Sbjct: 1295 MVFHMESAEVEKARAVARRALKTINFREEGERLNVWIALLNLELRYETV--ETFKEVLQE 1352

Query: 1628 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG- 1686
            A+QY D  KV+  ++ +     +   A +++  + K+F+   ++WL       K  Q   
Sbjct: 1353 AIQYNDAFKVYSRVIEIVIDCGKTAEALDIIDILQKRFRKQPEMWLLVGSSYYKLGQAAK 1412

Query: 1687 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1746
            V+ ++ +AL SL   +HI  I + A L  +NG  D    +FE IL+ YPKRTD+WS Y+D
Sbjct: 1413 VKPLLSKALKSLETKEHIPLIVKFAFLHNRNGERDEAHILFEQILTSYPKRTDIWSQYVD 1472

Query: 1747 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
              ++ G VD+ R   +RAI+  LP K MK L+ KY+ +E+  G+ E ++ +KQ A  YVE
Sbjct: 1473 MLVKDGLVDVARQTLDRAIAQRLPMKNMKTLYTKYVAFEEKHGDREAVKRIKQAAANYVE 1532

Query: 1807 STLA 1810
              L+
Sbjct: 1533 KQLS 1536



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 141/614 (22%), Positives = 257/614 (41%), Gaps = 40/614 (6%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG------LARA-ADALDPILDNEIEANEDNL--LP 59
           GM L G V ++ + D+ + LPG L G      ++ A  + L  ++   +   E+    L 
Sbjct: 82  GMLLMGCVYKITKMDIKVSLPGRLYGTVPIMAISEAYNNRLHSLVQKSLGGPEEQCPGLE 141

Query: 60  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 119
            ++H G LV   +     +K   G     L+L    L+  L+ + + EG+VL+A V+  E
Sbjct: 142 ELYHEGDLVYVKIKSKHSEKNHFG-----LTLDPQDLHSELTCKHLVEGLVLSATVEEEE 196

Query: 120 DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 179
           DHGY ++ G+ +   FLP +N+  N  I  +        V   + +  VV  +  P    
Sbjct: 197 DHGYQMNVGIRNVRAFLPTHNVRNNKMIVGRNLFCSVEKVTHGNGSATVVLRAFKPTEPR 256

Query: 180 KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF--PTTN 237
           K    ++   ++D LVPG +V+  V+S+L+NG+  S    F  TV  F  +N    P ++
Sbjct: 257 KL---EVAQPNVDSLVPGSVVTFTVESVLQNGLQGSL---FDDTVPAFVNENMLEKPLSS 310

Query: 238 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRG 297
            K  Y   K++ AR+L+V P ++ V +TL  +  +  +    V  G I   +K++     
Sbjct: 311 LKQ-YELFKEIPARVLYVMPLTKHVFVTLAHFDGNRASVADPVTPGKIIQDAKIIHKSLN 369

Query: 298 LGLLLDIPSTPVS-TPAYVTISDVAEE-EVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 355
            G+   I     +  P Y+  S   +  + + +  KY+ GS   VR++ F   +      
Sbjct: 370 -GVWFQIGKKHKALLPKYILKSKYNQNYDEQIVMAKYQVGSVHTVRVMRFEAFDRTIIVT 428

Query: 356 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 415
                 E   FT +D+K G +   ++  V     + +  G + +L  L  +      +P 
Sbjct: 429 DDEEKIETKYFTLNDLKVGDIYNCRITKV-----LDKKRGFLVSLDNLKGIVTAYNFEPS 483

Query: 416 KKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 473
           K +        R++G+   R     T+    +K    +L+S  +        G +   ++
Sbjct: 484 KTYAANQMAKLRLIGIDEDRKMAQFTNHPEYLKKSAKLLTSREDVKQGQRFLGTVISEQE 543

Query: 474 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 533
               V F N +     +    +       S    G V +  +        R  +   +  
Sbjct: 544 KFFIVAFCNKITAICFKFCRAVTQDQNRISRLKPGVVDRFTVNEVSEDGSRFTVVIPLDA 603

Query: 534 TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI 593
              SE+    LG +VSG +  +      +Y++ K  + GT+P E  +D   H  +  SV+
Sbjct: 604 E--SEN----LGHIVSGTITGIYATGADIYLV-KENATGTVPPELFSDFPPHNALYASVL 656

Query: 594 KPGYEFDQLLVLDN 607
           K G +   + V +N
Sbjct: 657 KEGEQLRVVNVKEN 670


>gi|389630328|ref|XP_003712817.1| hypothetical protein MGG_05260 [Magnaporthe oryzae 70-15]
 gi|351645149|gb|EHA53010.1| hypothetical protein MGG_05260 [Magnaporthe oryzae 70-15]
          Length = 1781

 Score =  210 bits (535), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 117/275 (42%), Positives = 173/275 (62%), Gaps = 11/275 (4%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L+ + P+T  +FERL+   PNSS +WI YMAF + ++++ KAR +AERA+ TIN+REE E
Sbjct: 1488 LDANGPQTAGDFERLLLGQPNSSALWIAYMAFHMQVSELAKAREVAERAINTINVREETE 1547

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLN+W+AY NLE  YG   +E++ +VF+RA QY D  +VH  L  +  ++ ++  ADEL 
Sbjct: 1548 KLNVWIAYLNLEVAYGT--DESLDEVFKRACQYNDDLEVHERLASICIQSGKHDKADELF 1605

Query: 1659 YKMIKKF-KHSCKVWLRRVQRLL---KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1714
              M+KKF   S KVWL     L    K    G +A++ RA+ SL  H H++  S+ A LE
Sbjct: 1606 QAMVKKFGSKSPKVWLNYAHFLYTSAKSPDRG-RALLPRAMKSLGSHAHLELASKFAGLE 1664

Query: 1715 FK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAI-SLSLP 1770
            F+   G  +RGR++FEG+LS YPKR DL    LD E+  G D  ++R +FER   +  L 
Sbjct: 1665 FRCPGGDPERGRTVFEGLLSTYPKRLDLRGQLLDLEVAAGSDKAVVRDVFERGTKAKGLK 1724

Query: 1771 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            PK+ K  F+++ ++E++ G+ +  E V  KA E+ 
Sbjct: 1725 PKQAKKWFQRWAKWEEANGDAKSREKVSAKAQEWA 1759



 Score =  207 bits (527), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 287/1198 (23%), Positives = 507/1198 (42%), Gaps = 130/1198 (10%)

Query: 58   LPTIFHVGQLVSCIVLQLDDDKKEIG---KRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 114
            L +I  VGQ V   V+   ++    G   KR+I LSL+  L   GLS   V E   +   
Sbjct: 197  LTSILSVGQYVRAYVVSTMEEPSTAGAKGKRRIELSLQPELANTGLSSADVVENSTVAGS 256

Query: 115  VKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKPG----LLLQGVVRSIDR----T 165
            + S+EDHGY++  G+ + TGFL +  + +  S   ++PG    LL+ GV   I +    T
Sbjct: 257  ISSVEDHGYVVDLGIQNLTGFLSKKEVDKGISAAQLEPGCVHLLLVTGVKGKIAQVSTLT 316

Query: 166  RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
            +K+  +   P T            +I+  +PG  V   V  I   G+    +     T D
Sbjct: 317  KKLSNVQLFPGTAK----------TINTFLPGTAVDVLVSDISGRGLAGKVMGSLDVTAD 366

Query: 226  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYL--LHNR------- 274
            I H        N +  Y    KV AR++   PTS    +G++L  +L  L  R       
Sbjct: 367  IIHSGLGPNGVNLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGK 426

Query: 275  -APP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 331
              PP + +    I +Q  V +V+  +GL +D     V  P +V IS V + +V  L +  
Sbjct: 427  EVPPLTALPHSSIVEQCTVTKVEPDIGLFVDTGIEGV--PGFVHISRVKDGKVDALYEAS 484

Query: 332  --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV----KGKVIAVD 385
              YK GS  R RI+G+  ++G+     + S  E       DV    VV    +  ++  D
Sbjct: 485  GPYKTGSVHRGRIVGYNSMDGMYHLSFEKSILERQYLRIEDVPIAEVVNVTIEKMIVKED 544

Query: 386  SF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKK 442
               G IV+   G+    P  H+++  +  P KKF+ G ++  RVL V   +  + +T KK
Sbjct: 545  GLSGVIVKLADGITGFVPEMHLADIRLQHPEKKFREGLKVKARVLSVDPAKNQLRLTFKK 604

Query: 443  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
            TLV S+ A +  + EA+      G I KI+  G FV+FY  ++GF P  E+      +P+
Sbjct: 605  TLVNSEAAPIKDFGEASVGQQVQGTIVKIKPIGAFVQFYGTLRGFLPIGEMSESFIRDPN 664

Query: 503  SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPN 558
              +  GQVV   ++S  P  RR+ +S         E  +    +K+G LVSG V   + +
Sbjct: 665  EHFRTGQVVNVHVISVDPERRRLVVSCKDPAAFGVEKQMALQKLKVGDLVSGSVTEKSED 724

Query: 559  AVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESS--NLLLS 615
             V +  +     K  +   HL D          S I+ G   + L+VL+ +    +++LS
Sbjct: 725  NVFLE-LKDSSLKAVLRAHHLTDKSPSKNQSALSKIRVGQTLEDLVVLEKDEGRRSIVLS 783

Query: 616  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 673
             K SL+ ++Q  Q  +  +      +V G+V NI  T  FV+F G LT   P+S      
Sbjct: 784  LKPSLVKASQNGQFLTTLADAKVGKLVQGFVRNITPTAVFVQFGGNLTALLPKSMISTQN 843

Query: 674  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--------------CCSSTDASFMQ 719
            +A       + Q++   +  V  E  R+ +S+  +                ++ DAS   
Sbjct: 844  QALEDFGLRLHQAIEVKVHSV--EDKRLVVSMPDAEAPKDTKPRHEAKPVSNAVDASITS 901

Query: 720  EH-----FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
                    + + +IA ++ ++ N           +   ++G+V  S  F          D
Sbjct: 902  TDDISVGTVTKARIASIKKTQLN---------VALADNVQGRVDISEVF----------D 942

Query: 775  VYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQK 832
             +  IT+ +   +      +I   ++ V  A+  R +  S +T        A  +    K
Sbjct: 943  SWDEITNAKDPLSKFTQNQIIDVRVIGVHDARNYRFLPFSHRTANSVLELTAKPSSVRAK 1002

Query: 833  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQF 890
             + K  A  D+    +    V   ++ +L ++L P     I  + VSD ++  K  ++ F
Sbjct: 1003 GQYKPLAMADVKAGSSWLTFVNNNEDKWLWVNLSPAVRGRIRSSEVSDDSSHGKDLRQNF 1062

Query: 891  LNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 950
              G ++ A V+A+ + +  G+L L  ++    E    +  +K       +++ A +T++ 
Sbjct: 1063 PVGTALRARVLAVDADN--GKLDLSARSARPNEHMKWEELEKD------TVMHARVTKVN 1114

Query: 951  PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1010
              ++  +        + I ++NDD  +      +  K  +    R+   S   + KK   
Sbjct: 1115 DRQVFFQISDSVAAPVQIIDLNDDYDHA-----NPLKYSKNDIVRVSVVSIDKNHKK--- 1166

Query: 1011 WELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1068
              LS + S +  SE  +  K +     +  G  + G+V  V ++   +T+   + A + I
Sbjct: 1167 LRLSARESRVLSSELPVKDKEITSVSQIEQGTILRGFVKNVSDKGLFVTLGGDVTALVRI 1226

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
             D     + L++++  F + + V G V S++K        L   Q  +    VD     +
Sbjct: 1227 SD--LSDAFLKDWKEHFQVDQLVKGRVTSVDK-------TLGHVQMSLKASAVDEDYKPL 1277

Query: 1129 QTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1184
              +  + EG ++ G++ K+      +++    ++ G  H TE+ +  V D    Y EG
Sbjct: 1278 PGYGDLKEGQVITGKVRKVADFGAFILIDKSANVSGLCHRTEMADKPVKDATKLYREG 1335



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 189/459 (41%), Gaps = 66/459 (14%)

Query: 981  NLFSNFKIGQTVTARIIAKSNKPDMKK---SFLWEL-SIKPSMLTV--------SEIGSK 1028
            NL   +KIG  V AR+I      D  K   S L  L S++P    V        + +   
Sbjct: 378  NLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGKEVPPLTALPHS 437

Query: 1029 LLFEECDVSIGQRVTGYVYKVDNEW--ALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1086
             + E+C V+  +   G       E     + ISR    ++  L  A  P +     R   
Sbjct: 438  SIVEQCTVTKVEPDIGLFVDTGIEGVPGFVHISRVKDGKVDALYEASGPYKTGSVHRGRI 497

Query: 1087 IGKAVTGHVLSINKEKKLL-RLVLRPFQDGISDKTV-DISNDNMQTFIHEGDIVGGRISK 1144
            +G      +  ++ EK +L R  LR     I D  + ++ N  ++  I + D + G I K
Sbjct: 498  VGYNSMDGMYHLSFEKSILERQYLR-----IEDVPIAEVVNVTIEKMIVKEDGLSGVIVK 552

Query: 1145 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1204
            +  G+ G V    P ++       L +I +  P     E +F       EG  VK +VL 
Sbjct: 553  LADGITGFV----PEMH-------LADIRLQHP-----EKKFR------EGLKVKARVLS 590

Query: 1205 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1264
            +         + L+ + +L              V++    ++   + S    VQG +  +
Sbjct: 591  VDPAKN---QLRLTFKKTL--------------VNSEAAPIKDFGEASVGQQVQGTIVKI 633

Query: 1265 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
               G F+     L   + +  +S+ ++  P + F  G++V   V+SV+P  +R+ V+ K 
Sbjct: 634  KPIGAFVQFYGTLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHVISVDPERRRLVVSCK- 692

Query: 1325 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDH 1381
             D       +   L  L VGD+V G +       +F+ +++++L  +    H+++ S   
Sbjct: 693  -DPAAFGVEKQMALQKLKVGDLVSGSVTEKSEDNVFLELKDSSLKAVLRAHHLTDKSPSK 751

Query: 1382 VDNIETIYRAGEKVK-VKILKVDKEKRRISLGMKSSYFK 1419
              +  +  R G+ ++ + +L+ D+ +R I L +K S  K
Sbjct: 752  NQSALSKIRVGQTLEDLVVLEKDEGRRSIVLSLKPSLVK 790


>gi|440466088|gb|ELQ35374.1| rRNA biogenesis protein RRP5 [Magnaporthe oryzae Y34]
 gi|440482704|gb|ELQ63171.1| rRNA biogenesis protein RRP5 [Magnaporthe oryzae P131]
          Length = 1808

 Score =  210 bits (535), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 117/275 (42%), Positives = 173/275 (62%), Gaps = 11/275 (4%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L+ + P+T  +FERL+   PNSS +WI YMAF + ++++ KAR +AERA+ TIN+REE E
Sbjct: 1515 LDANGPQTAGDFERLLLGQPNSSALWIAYMAFHMQVSELAKAREVAERAINTINVREETE 1574

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLN+W+AY NLE  YG   +E++ +VF+RA QY D  +VH  L  +  ++ ++  ADEL 
Sbjct: 1575 KLNVWIAYLNLEVAYGT--DESLDEVFKRACQYNDDLEVHERLASICIQSGKHDKADELF 1632

Query: 1659 YKMIKKF-KHSCKVWLRRVQRLL---KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1714
              M+KKF   S KVWL     L    K    G +A++ RA+ SL  H H++  S+ A LE
Sbjct: 1633 QAMVKKFGSKSPKVWLNYAHFLYTSAKSPDRG-RALLPRAMKSLGSHAHLELASKFAGLE 1691

Query: 1715 FK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAI-SLSLP 1770
            F+   G  +RGR++FEG+LS YPKR DL    LD E+  G D  ++R +FER   +  L 
Sbjct: 1692 FRCPGGDPERGRTVFEGLLSTYPKRLDLRGQLLDLEVAAGSDKAVVRDVFERGTKAKGLK 1751

Query: 1771 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            PK+ K  F+++ ++E++ G+ +  E V  KA E+ 
Sbjct: 1752 PKQAKKWFQRWAKWEEANGDAKSREKVSAKAQEWA 1786



 Score =  206 bits (525), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 287/1198 (23%), Positives = 507/1198 (42%), Gaps = 130/1198 (10%)

Query: 58   LPTIFHVGQLVSCIVLQLDDDKKEIG---KRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 114
            L +I  VGQ V   V+   ++    G   KR+I LSL+  L   GLS   V E   +   
Sbjct: 224  LTSILSVGQYVRAYVVSTMEEPSTAGAKGKRRIELSLQPELANTGLSSADVVENSTVAGS 283

Query: 115  VKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKPG----LLLQGVVRSIDR----T 165
            + S+EDHGY++  G+ + TGFL +  + +  S   ++PG    LL+ GV   I +    T
Sbjct: 284  ISSVEDHGYVVDLGIQNLTGFLSKKEVDKGISAAQLEPGCVHLLLVTGVKGKIAQVSTLT 343

Query: 166  RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
            +K+  +   P T            +I+  +PG  V   V  I   G+    +     T D
Sbjct: 344  KKLSNVQLFPGTAK----------TINTFLPGTAVDVLVSDISGRGLAGKVMGSLDVTAD 393

Query: 226  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYL--LHNR------- 274
            I H        N +  Y    KV AR++   PTS    +G++L  +L  L  R       
Sbjct: 394  IIHSGLGPNGVNLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGK 453

Query: 275  -APP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 331
              PP + +    I +Q  V +V+  +GL +D     V  P +V IS V + +V  L +  
Sbjct: 454  EVPPLTALPHSSIVEQCTVTKVEPDIGLFVDTGIEGV--PGFVHISRVKDGKVDALYEAS 511

Query: 332  --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV----KGKVIAVD 385
              YK GS  R RI+G+  ++G+     + S  E       DV    VV    +  ++  D
Sbjct: 512  GPYKTGSVHRGRIVGYNSMDGMYHLSFEKSILERQYLRIEDVPIAEVVNVTIEKMIVKED 571

Query: 386  SF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKK 442
               G IV+   G+    P  H+++  +  P KKF+ G ++  RVL V   +  + +T KK
Sbjct: 572  GLSGVIVKLADGITGFVPEMHLADIRLQHPEKKFREGLKVKARVLSVDPAKNQLRLTFKK 631

Query: 443  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
            TLV S+ A +  + EA+      G I KI+  G FV+FY  ++GF P  E+      +P+
Sbjct: 632  TLVNSEAAPIKDFGEASVGQQVQGTIVKIKPIGAFVQFYGTLRGFLPIGEMSESFIRDPN 691

Query: 503  SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPN 558
              +  GQVV   ++S  P  RR+ +S         E  +    +K+G LVSG V   + +
Sbjct: 692  EHFRTGQVVNVHVISVDPERRRLVVSCKDPAAFGVEKQMALQKLKVGDLVSGSVTEKSED 751

Query: 559  AVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESS--NLLLS 615
             V +  +     K  +   HL D          S I+ G   + L+VL+ +    +++LS
Sbjct: 752  NVFLE-LKDSSLKAVLRAHHLTDKSPSKNQSALSKIRVGQTLEDLVVLEKDEGRRSIVLS 810

Query: 616  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 673
             K SL+ ++Q  Q  +  +      +V G+V NI  T  FV+F G LT   P+S      
Sbjct: 811  LKPSLVKASQNGQFLTTLADAKVGKLVQGFVRNITPTAVFVQFGGNLTALLPKSMISTQN 870

Query: 674  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--------------CCSSTDASFMQ 719
            +A       + Q++   +  V  E  R+ +S+  +                ++ DAS   
Sbjct: 871  QALEDFGLRLHQAIEVKVHSV--EDKRLVVSMPDAEAPKDTKPRHEAKPVSNAVDASITS 928

Query: 720  EH-----FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
                    + + +IA ++ ++ N           +   ++G+V  S  F          D
Sbjct: 929  TDDISVGTVTKARIASIKKTQLN---------VALADNVQGRVDISEVF----------D 969

Query: 775  VYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQK 832
             +  IT+ +   +      +I   ++ V  A+  R +  S +T        A  +    K
Sbjct: 970  SWDEITNAKDPLSKFTQNQIIDVRVIGVHDARNYRFLPFSHRTANSVLELTAKPSSVRAK 1029

Query: 833  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQF 890
             + K  A  D+    +    V   ++ +L ++L P     I  + VSD ++  K  ++ F
Sbjct: 1030 GQYKPLAMADVKAGSSWLTFVNNNEDKWLWVNLSPAVRGRIRSSEVSDDSSHGKDLRQNF 1089

Query: 891  LNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 950
              G ++ A V+A+ + +  G+L L  ++    E    +  +K       +++ A +T++ 
Sbjct: 1090 PVGTALRARVLAVDADN--GKLDLSARSARPNEHMKWEELEKD------TVMHARVTKVN 1141

Query: 951  PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1010
              ++  +        + I ++NDD  +      +  K  +    R+   S   + KK   
Sbjct: 1142 DRQVFFQISDSVAAPVQIIDLNDDYDHA-----NPLKYSKNDIVRVSVVSIDKNHKK--- 1193

Query: 1011 WELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1068
              LS + S +  SE  +  K +     +  G  + G+V  V ++   +T+   + A + I
Sbjct: 1194 LRLSARESRVLSSELPVKDKEITSVSQIEQGTILRGFVKNVSDKGLFVTLGGDVTALVRI 1253

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
             D     + L++++  F + + V G V S++K        L   Q  +    VD     +
Sbjct: 1254 SD--LSDAFLKDWKEHFQVDQLVKGRVTSVDK-------TLGHVQMSLKASAVDEDYKPL 1304

Query: 1129 QTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1184
              +  + EG ++ G++ K+      +++    ++ G  H TE+ +  V D    Y EG
Sbjct: 1305 PGYGDLKEGQVITGKVRKVADFGAFILIDKSANVSGLCHRTEMADKPVKDATKLYREG 1362



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 189/459 (41%), Gaps = 66/459 (14%)

Query: 981  NLFSNFKIGQTVTARIIAKSNKPDMKK---SFLWEL-SIKPSMLTV--------SEIGSK 1028
            NL   +KIG  V AR+I      D  K   S L  L S++P    V        + +   
Sbjct: 405  NLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGKEVPPLTALPHS 464

Query: 1029 LLFEECDVSIGQRVTGYVYKVDNEW--ALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1086
             + E+C V+  +   G       E     + ISR    ++  L  A  P +     R   
Sbjct: 465  SIVEQCTVTKVEPDIGLFVDTGIEGVPGFVHISRVKDGKVDALYEASGPYKTGSVHRGRI 524

Query: 1087 IGKAVTGHVLSINKEKKLL-RLVLRPFQDGISDKTV-DISNDNMQTFIHEGDIVGGRISK 1144
            +G      +  ++ EK +L R  LR     I D  + ++ N  ++  I + D + G I K
Sbjct: 525  VGYNSMDGMYHLSFEKSILERQYLR-----IEDVPIAEVVNVTIEKMIVKEDGLSGVIVK 579

Query: 1145 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1204
            +  G+ G V    P ++       L +I +  P     E +F       EG  VK +VL 
Sbjct: 580  LADGITGFV----PEMH-------LADIRLQHP-----EKKFR------EGLKVKARVLS 617

Query: 1205 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1264
            +         + L+ + +L              V++    ++   + S    VQG +  +
Sbjct: 618  VDPAKN---QLRLTFKKTL--------------VNSEAAPIKDFGEASVGQQVQGTIVKI 660

Query: 1265 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
               G F+     L   + +  +S+ ++  P + F  G++V   V+SV+P  +R+ V+ K 
Sbjct: 661  KPIGAFVQFYGTLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHVISVDPERRRLVVSCK- 719

Query: 1325 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDH 1381
             D       +   L  L VGD+V G +       +F+ +++++L  +    H+++ S   
Sbjct: 720  -DPAAFGVEKQMALQKLKVGDLVSGSVTEKSEDNVFLELKDSSLKAVLRAHHLTDKSPSK 778

Query: 1382 VDNIETIYRAGEKVK-VKILKVDKEKRRISLGMKSSYFK 1419
              +  +  R G+ ++ + +L+ D+ +R I L +K S  K
Sbjct: 779  NQSALSKIRVGQTLEDLVVLEKDEGRRSIVLSLKPSLVK 817


>gi|170062256|ref|XP_001866588.1| programmed cell death protein 11 [Culex quinquefasciatus]
 gi|167880230|gb|EDS43613.1| programmed cell death protein 11 [Culex quinquefasciatus]
          Length = 1481

 Score =  207 bits (528), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 186/325 (57%), Gaps = 9/325 (2%)

Query: 1490 EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE--IRAAEERLLEKDA-PRT 1546
            +QP  D   S +    D  +   +K+   AK++ +  R++E  IR  EE L +    P T
Sbjct: 1151 QQPPSD---SSDDEENDRVEVPAKKSRLTAKERFEAMRQEEKRIRQIEEELADSSVDPHT 1207

Query: 1547 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY 1606
            PD+F+R++ + PNSS +WI+YM F +  A+++KAR++A RAL+TIN REENE+LN+W+A 
Sbjct: 1208 PDQFDRMLLAQPNSSLLWIRYMVFHMESAEIDKARAVARRALKTINFREENERLNVWIAL 1267

Query: 1607 FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1666
             NLE  Y     E   ++ Q A+QY DP KV+  ++ +     +      +   + K+F+
Sbjct: 1268 LNLELRYETI--ETFKEILQEAVQYNDPYKVYSKVIEVLIDCGKTAEVLGMTELLQKRFR 1325

Query: 1667 HSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRS 1725
               ++W        K   +  V+ ++ +AL SL   +HI  I + A L  +N   D    
Sbjct: 1326 KQPEMWHLIASCFYKIGNRSKVKPLLSKALKSLENKEHIPLIVKFAFLHNRNDDRDEAHI 1385

Query: 1726 MFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1785
            +FE IL+ YPKRTD+WS Y+D  ++ G VD+ R   +RAI   LP + MK LF KY+ +E
Sbjct: 1386 LFEQILTSYPKRTDIWSQYVDMLVKDGLVDVARQTLDRAIVQRLPMRNMKTLFTKYVNFE 1445

Query: 1786 KSVGEEERIEYVKQKAMEYVESTLA 1810
            +  G+ E +  +KQ+A EYVE  LA
Sbjct: 1446 EKHGDREAVRRIKQQAAEYVERQLA 1470



 Score =  100 bits (249), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 158/624 (25%), Positives = 262/624 (41%), Gaps = 62/624 (9%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL---LPTIF 62
           GM + G V +V + +L++ LPG L G   +   + A    L + +E  E      L  ++
Sbjct: 82  GMLVLGCVYKVQKLELLVSLPGRLFGRVPVTAISGAYGKRLQSVVEGGEGGCCPGLEELY 141

Query: 63  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
            VG+LV   +   D ++      +  LSL    L+  L+ + + EG+V++A V+  EDHG
Sbjct: 142 SVGELVYVKIKGKDQER-----WRFELSLDPKELHSELNHKHLVEGLVISATVEEEEDHG 196

Query: 123 YILHFGLPSFTGFLP----RNNLAENSG---IDVKPGLLLQGVVRSIDRTRKVVYLSSDP 175
           Y ++ G+ +   FLP    RNN  E  G     V+   L  G       T  V+  +  P
Sbjct: 197 YQMNVGIRNVRAFLPTKNVRNNRMEVGGNVHCTVEKVTLANG-------TATVILKAFKP 249

Query: 176 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
             + K    D+   +ID L+PG +V+  V+SIL NG+     T F  TV  F  +N    
Sbjct: 250 KELRKL---DVAAANIDSLMPGSVVTFTVESILPNGLQ---GTLFDDTVPAFVNENMLEK 303

Query: 236 TNWK-NDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHVKVGDIYDQS 289
              K   +   K+V ARIL+V P ++ V LTL     N Y + +  P     VG +   +
Sbjct: 304 PLSKVASFELFKQVPARILYVMPMTKHVFLTLAIGDSNRYSVADPLP-----VGTVLKDA 358

Query: 290 KVVRVDRGLGLLLDIPSTPVS-TPAYVTISDV-AEEEVRKLEKKYKEGSCVRVRILGFRH 347
           KV+      G+   +     +  P YV  S   A  + + +  KY+ GS   VR++ +  
Sbjct: 359 KVMHKCSTGGVWFQLGKKHKALLPRYVLKSRYNANYDEQIVMAKYQIGSLHTVRVIRYEA 418

Query: 348 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV--DSFGAIVQFPGGVKALCPLPH 405
            +         +      F+  D++ G V + +V  +  D  G  V   GG      + H
Sbjct: 419 FDRTLIITDDDATIGSRFFSLDDLRVGDVYECRVTRILDDKRGLAVTLAGGRVKGIVMSH 478

Query: 406 MSEFEIVKPGKKFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRL 462
              F      K++     +  R++G+   K + +   H + L KS   IL   A   D+ 
Sbjct: 479 NYRF-----TKQYAPKQSIKMRLIGIDEDKQQALFTNHPEYLRKSAKLILDRAAIKPDQK 533

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
                I++ EK    V F N +     +    +    E       G V    +       
Sbjct: 534 CLGTVISETEKF-FIVAFCNKITAILFKFCRSVTQDSERIDRLKPGSVELFTVHEVTEDG 592

Query: 523 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 582
            +I L   + P     D+   LG + +  +  +    V VY++ K    GT+P E L+D 
Sbjct: 593 AKITL---ILPFATGGDN---LGHVSTATITGIFATGVDVYLV-KENETGTVPPEALSDF 645

Query: 583 LEHATVMKSVIKPGYEFDQLLVLD 606
            EH  +++S ++ G +   + V D
Sbjct: 646 PEHNALVQSTLREGEKLKVVNVQD 669


>gi|426201105|gb|EKV51028.1| hypothetical protein AGABI2DRAFT_196672 [Agaricus bisporus var.
           bisporus H97]
          Length = 1470

 Score =  205 bits (521), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 230/915 (25%), Positives = 400/915 (43%), Gaps = 107/915 (11%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---DNEIEANEDNL----- 57
           GMK+ G V  +    L+I LP  L G   + + +     +L   DN  E +++++     
Sbjct: 115 GMKILGQVVSIIPLGLIISLPNQLYGHVPITQISSQFTTVLERFDNRDEGSDEDIAMEDE 174

Query: 58  --------LPTIFHVGQLVSCIVLQLD----DDKKEIGK---------RKIWLSLRLSLL 96
                   L  +FHVGQ V  IV  +      D   +GK         R++ LSL    +
Sbjct: 175 DEDTQTPDLYGMFHVGQYVRAIVTNVHAAGVSDIMGVGKLRDDLAKASRRMELSLVPEKV 234

Query: 97  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQ 156
             G+    ++ G  ++A VKS+EDHGY L  G+   +GFL   ++  +S   +  G ++ 
Sbjct: 235 NAGVQKTDLKSGFTISAAVKSLEDHGYNLDLGVQDVSGFLSFEDVGRDSP-KLHVGHVIN 293

Query: 157 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 216
             V  I    +V  ++ D +  +K +  ++   S++ ++PG +V   + SI   G+ L  
Sbjct: 294 VSVSKISANNRVCNVTMDCEKQAKSLLYEIS--SVNSVLPGTLVQCLITSINPEGINLQV 351

Query: 217 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---VDPTSRAVGLT-----LNP 268
           L +F GTVD FHL    P       +    KV ARIL+     P   ++ L+     L P
Sbjct: 352 LGFFDGTVDQFHLPKNPPKP-----FKVGTKVKARILYNYSASPPKFSLALSEHVIRLRP 406

Query: 269 YLLHNRAPPSHVK----VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 324
           Y++      S ++    VG + D  KV RV++  GL++++         +V IS ++++ 
Sbjct: 407 YMVSMGEDSSLLEEAYPVGTVLDAVKVSRVEKERGLIVEVDG---QLEGFVHISHLSDDH 463

Query: 325 VRKLEK--KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
           V  L     +K G+  R R+ G    +GL    LK S  E      +DV  G  V G + 
Sbjct: 464 VPSLTSIGPWKPGTIHRARVTGHFTFDGLLQLSLKRSVLEQKYIQVTDVGVGQTVTGTIK 523

Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTH 440
            +      V     +  +    H ++  +  P K+FKVG  +  RVL V ++  RI++T 
Sbjct: 524 KLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRVLVVDAEKNRISLTA 583

Query: 441 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
           KKTL+ S+L ILS+  +     + H  + K+      V FYN ++   P  E+   P   
Sbjct: 584 KKTLLNSQLPILSNIEDVQPEDLAHAVVFKVHDKHLLVEFYNNLKAVIPLKEVSETPVNS 643

Query: 501 PSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL--VKLGSLVSGVVDVVTP 557
            S  + VG+VVK RI+S     RRI  S      T  +  D+  V++G++V GVV  +  
Sbjct: 644 LSEAFSVGKVVKVRIISVQQNQRRIVASIRRATATGSATPDISKVEVGNIVEGVVAEIHK 703

Query: 558 NAVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMKSVIKPGYEFDQLLVLDNESSN---LL 613
           +  +++ +     K     ++LA+H       +KS +K G    +L+V+         ++
Sbjct: 704 DNAILF-LQPSNVKALHSLKNLANHRAIGLPQLKSELKVGERLSELVVVTRNLEKGFVIV 762

Query: 614 LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 673
            +A  S +    ++     ++H   +V G V      G  V+    + G    +   D  
Sbjct: 763 ANAPKSKLTLPSKIALSIDNVHIGQIVSGRVIRHTRLGALVKVTSHIGGIIHPTDVSDNF 822

Query: 674 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS 733
              LS    V   V++ I+ V+ E  R+TLS +QS                  ++   Q+
Sbjct: 823 DNGLSYP-AVDSLVKAAIVKVDEEKRRVTLSTRQS------------------RLRPDQT 863

Query: 734 SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY--------GFITHHQLA 785
           ++    E+  +   I+G+ + G V    D G+ V+   + D           FI   +  
Sbjct: 864 TQVVDKEINDISDLILGASVRGFVKSIADHGLFVTVGRYIDARVQIRELFDDFIKDWK-- 921

Query: 786 GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 845
               +   +++  IL V    + V+L+        FR  + + + ++ + KR  S DL  
Sbjct: 922 -PKFQVNQLVKGRILSVDIENQKVELT--------FRSGDLSARQREGQTKRSPS-DLHE 971

Query: 846 HQTVNAIVEIVKENY 860
            + V+ I++ + ENY
Sbjct: 972 GEKVDGIIKRI-ENY 985



 Score =  143 bits (360), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 162/606 (26%), Positives = 285/606 (47%), Gaps = 72/606 (11%)

Query: 842  DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 901
            D+GV QTV   ++ + ++ + ++L E    + + +       K P K+F  G S+   V+
Sbjct: 511  DVGVGQTVTGTIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRVL 570

Query: 902  ALPS-----SSTAGRLLL--LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLEL 954
             + +     S TA + LL   L  +S  E    +            L  A + ++    L
Sbjct: 571  VVDAEKNRISLTAKKTLLNSQLPILSNIEDVQPE-----------DLAHAVVFKVHDKHL 619

Query: 955  RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1014
             ++F       I + EV++   N +   FS   +G+ V  RII+             +  
Sbjct: 620  LVEFYNNLKAVIPLKEVSETPVNSLSEAFS---VGKVVKVRIISVQQN---------QRR 667

Query: 1015 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS-RHLKAQLFILDSA- 1072
            I  S+   +  GS    +   V +G  V G V ++  + A+L +   ++KA   + + A 
Sbjct: 668  IVASIRRATATGSATP-DISKVEVGNIVEGVVAEIHKDNAILFLQPSNVKALHSLKNLAN 726

Query: 1073 YEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            +    L + +    +G+ ++  V+ + N EK  + +   P         + +S DN    
Sbjct: 727  HRAIGLPQLKSELKVGERLSELVVVTRNLEKGFVIVANAPKSKLTLPSKIALSIDN---- 782

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            +H G IV GR+  I     G +V++  H+ G +H T+     VSD    +D G    LS 
Sbjct: 783  VHIGQIVSGRV--IRHTRLGALVKVTSHIGGIIHPTD-----VSD---NFDNG----LSY 828

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
                  VK  ++++    R         R +L    S    D +T V    K +  I DL
Sbjct: 829  PAVDSLVKAAIVKVDEEKR---------RVTLSTRQSRLRPDQTTQV--VDKEINDISDL 877

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
                 V+G+VK++   G F+ + R +DA+V +  L D +++  + +F + +LV GR+LSV
Sbjct: 878  ILGASVRGFVKSIADHGLFVTVGRYIDARVQIRELFDDFIKDWKPKFQVNQLVKGRILSV 937

Query: 1312 EPLSKRVEVTLKTSD--SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            +  +++VE+T ++ D  +R        + S+LH G+ V G IKR+E+YGLFI IE T + 
Sbjct: 938  DIENQKVELTFRSGDLSARQREGQTKRSPSDLHEGEKVDGIIKRIENYGLFIQIEGTKMS 997

Query: 1370 GLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            GLCH SELS++   ++      +R G++VK  ++++D  K+RIS  +K S F    ++L 
Sbjct: 998  GLCHKSELSDNKDADVSVALQNFRQGDRVKAVVIEID--KKRISFSLKPSLFVE--EDLD 1053

Query: 1427 MSSEEE 1432
             S+E+E
Sbjct: 1054 GSAEDE 1059


>gi|315046956|ref|XP_003172853.1| rRNA biogenesis protein RRP5 [Arthroderma gypseum CBS 118893]
 gi|311343239|gb|EFR02442.1| rRNA biogenesis protein RRP5 [Arthroderma gypseum CBS 118893]
          Length = 1821

 Score =  204 bits (520), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/293 (38%), Positives = 179/293 (61%), Gaps = 26/293 (8%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L+ + P++  ++ERL+   P+SS +W+KYMAF L + +V+KAR IAERAL+T++I ++ E
Sbjct: 1526 LDANGPQSVADYERLLLGEPDSSLLWLKYMAFQLELGEVDKAREIAERALRTMSIGQDTE 1585

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLN+WVA  NLEN +GN  ++ + +VF+ A +Y D  +++  +  ++ ++ + + ADEL 
Sbjct: 1586 KLNVWVARLNLENTFGN--DDTLDEVFKGACEYNDAHEIYDRMASIFIQSGKTEKADELF 1643

Query: 1659 YKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA---VVQRALLSLPRHKHIKFISQTAILEF 1715
               +KK   S   +       L    E  Q    ++ RAL SLP H H++  S+   LEF
Sbjct: 1644 QAALKKKVSSTPDFFLNYANFLFDTMEAPQRGRDLLPRALQSLPPHTHVEVTSRFGQLEF 1703

Query: 1716 K--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS----- 1768
            +  NG  +RGR++FEG+LS +PKR DLW++ LD EI+LGD + +R LFER + +      
Sbjct: 1704 RSPNGDVERGRTVFEGLLSSFPKRIDLWNVLLDLEIKLGDEEQVRRLFERVLGIGHGVVT 1763

Query: 1769 -----------LPPKKMKFLFKKYLEYEKSV---GEEERIEYVKQKAMEYVES 1807
                       L  K+ KFLFKK+L +E+ +   G+ + ++ VK +A +YV S
Sbjct: 1764 ADGTKGGPKKKLKEKQAKFLFKKWLAFEEKIAPEGDTKMVDEVKARAADYVRS 1816



 Score =  197 bits (501), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 309/1328 (23%), Positives = 557/1328 (41%), Gaps = 148/1328 (11%)

Query: 4    QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA----------- 52
            + I+ G ++ G V+ +   D+ + LP  L G     +A+   L  ++EA           
Sbjct: 167  KRIAVGSRILGQVSSIGLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEE 225

Query: 53   --NEDNLLPTIFHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQE 107
              ++D  L     +GQ +   V      +DDKK   K+ I LS+       GL+   +  
Sbjct: 226  DEDDDFELKDYVKIGQYLRASVTATTRNEDDKKVKNKKHIELSIEPHAANSGLTKADMVV 285

Query: 108  GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSI 162
               + A V S+EDHG I+  GL      GF+    L   +G+D   VK G +   +V   
Sbjct: 286  NATVQASVISVEDHGLIMDLGLEENEAKGFISSRELP--AGVDISTVKEGSVFLCIVTGH 343

Query: 163  DRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
            + +  VV LS+D  +              +I+  +PG      +  +   G++   +   
Sbjct: 344  NASGTVVKLSADLASAGSVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGML 403

Query: 221  TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV 280
               +DI H   +    +    Y+   K+  R++   P+S  V L  +      +  P+  
Sbjct: 404  DAVIDIIHSGASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTAT 463

Query: 281  ----------KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL-- 328
                       + DI  + KV  VD  LGL + + ST      +V +S +A+  V  +  
Sbjct: 464  LASGDDNDMPSISDIIPEVKVTYVDSSLGLYVQLGST--KHQGFVHLSRLADGRVDSISS 521

Query: 329  -EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IA 383
             E +YK GS    RI+GF  ++ L +  L+    E       DV  G VVKGK+    + 
Sbjct: 522  DEGRYKVGSTHEGRIIGFSAMDNLFSVSLEPKIIEQPFLRLEDVTVGSVVKGKIEKLLVK 581

Query: 384  VDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTH 440
             +   G IV     +  L P  HM++ ++  P KKF+ G ++  RVL V  +R  + +T 
Sbjct: 582  PEGIEGLIVSLTDNISGLVPGMHMADTKLQHPEKKFREGLKVSVRVLSVDLQRRQLRLTL 641

Query: 441  KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
            KK+L+ S  A   +Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +
Sbjct: 642  KKSLLNSDSAPWKNYESVSAGNRSPGTLIKIQNNGAIVQFYGSVKGFLPVSEMSEAYIKD 701

Query: 501  PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVV 555
            PS  + VGQVV    ++    S R+ +S    P+  + D     + +  G +VSG V   
Sbjct: 702  PSQHFTVGQVVNVHALTVDAESERLVVS-CKDPSTATADYQSAFEKIHPGLVVSGTVFEK 760

Query: 556  TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 614
            + + +++ +   G     + ++H++D      T   + I+ G + + LLV   + S+ L+
Sbjct: 761  SSDDLLIKLQDSGLI-ARLNSDHISDGSAAKRTSALNRIRVGQKMEGLLVYRVKKSHRLI 819

Query: 615  --SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 670
              + K +L  +  +  LP+    I     V G + NII  G FV FL  LTG  P+ + V
Sbjct: 820  QVTNKATLKEAVAEGRLPAKFEDIKHGLKVTGLIKNIIPEGIFVEFLDNLTGLIPK-RLV 878

Query: 671  DGQRADLSK-TYYVGQSVRSNILDVNSETGRITLSLK--QSCCSSTDASFMQEHFLLEEK 727
            D  RA      Y   Q + + +  V  ++ R  LSLK       S+D S        E+K
Sbjct: 879  DDDRASRPDFGYSRFQVISATVCAVQEDSDRFLLSLKPVAKLKQSSDVSSAP-----EKK 933

Query: 728  IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDVYG 777
             +    +     +LK +E  ++G + + K+    D    VV        +   E  D + 
Sbjct: 934  ASATALTNPVDGDLKTMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEVFDSWE 993

Query: 778  FITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 835
             I   +    +  S  ++   +L +  A+  + + +S ++  +  +  +      Q  + 
Sbjct: 994  DIKDRKHPLKSCHSKEILPVRVLGIHDARNHKFLPISHRSGKVPVYELSTKPSCLQASEF 1053

Query: 836  KREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNG 893
            K    + L V  T    V  + E+ L L+L P     +    +S D + +   QK F  G
Sbjct: 1054 KPLHLEHLKVGDTHVGYVNNIAEDCLWLNLSPNVRGRLRITDISDDISIRGNIQKNFPVG 1113

Query: 894  QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLE 953
             ++   V  + +     RL L  +     +T +     K      G ++   +T++   +
Sbjct: 1114 SAIQVVVTGVDAEKN--RLDLSARIGESAKTLTVADLSK------GMILVGRVTKVTDRQ 1165

Query: 954  LRLKFGIGFHGRIHITEVNDD--KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1011
            + ++      G + + ++ DD  K+N      +NF   + +   ++   + P+ K SF  
Sbjct: 1166 VLVQINDNVVGAVSLIDMADDYTKANP-----TNFHKNEALRVCVV-DVDIPNKKISF-- 1217

Query: 1012 ELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1069
              S++PS +  S   +    +     + +GQ V G++ +VDN    +T+  ++ A  +I 
Sbjct: 1218 --SVRPSKVLSSSLPVADPEITSINQLKVGQIVRGFIRRVDNIGIFVTLGHNVTA--YIR 1273

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----------PFQDGISDK 1119
             S    S L+E++  F + + + G +  ++K+   +++ L+          PF   + D 
Sbjct: 1274 VSDLSDSFLKEWKDEFQVDQLIQGRLTVVDKDNNKIQMTLKKSALDPNYKPPF--ALKDL 1331

Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
             V             G IV G++ K+      + +    +L G  H +E+    V D   
Sbjct: 1332 KV-------------GQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT- 1377

Query: 1180 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL--DGMSSTNSSDLSTD 1237
                 Q      Y++   VK KVL++    +G   + L L++S   D      S D S+D
Sbjct: 1378 -----QL-----YEKDDIVKAKVLKVDLE-KG--QIALGLKASYFKDLPEEQQSEDNSSD 1424

Query: 1238 VDTPGKHL 1245
             ++ G  L
Sbjct: 1425 DESGGIEL 1432


>gi|408391805|gb|EKJ71173.1| hypothetical protein FPSE_08679 [Fusarium pseudograminearum CS3096]
          Length = 1784

 Score =  204 bits (519), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 113/289 (39%), Positives = 180/289 (62%), Gaps = 11/289 (3%)

Query: 1506 DEAKTIDEKNNRHAKKKEKEEREQ-EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1564
            DE ++  E+  + A+K +K+ R + E++      L+ + P+T  ++ERL+   P+SS +W
Sbjct: 1459 DEPESESEEQVKDAEKPKKKRRTRDEVQIDRTAELDTNGPQTSSDYERLLLGQPDSSELW 1518

Query: 1565 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1624
            I Y+AF + +A++ KAR +AERA++TINIREE EKLN+WVAY NLE  YG   ++ V +V
Sbjct: 1519 IAYLAFQMQVAELSKAREVAERAIKTINIREETEKLNVWVAYLNLEVAYGT--KQTVEEV 1576

Query: 1625 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LK 1681
            F+RA QY D +++H  L  +Y ++E+ K AD L   M+KKF   S  VWL     L   +
Sbjct: 1577 FKRACQYNDQQEIHERLASVYIQSERLKDADALFETMVKKFGAKSPSVWLNYAHFLHATR 1636

Query: 1682 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTD 1739
             + +G +A++ RA   L +  H   +++ A LEF+  NG  +RGR+MF G+L  +PK+ D
Sbjct: 1637 NKPDGARALLPRATQQLGKSHHTNLMTRFAALEFRSPNGEPERGRTMFAGLLEAFPKKGD 1696

Query: 1740 LWSIYLDQEIRLGDVD--LIRGLF-ERAISLSLPPKKMKFLFKKYLEYE 1785
            +WS  LD E+ L + D  +IR +F ER     L P + +  F+++ ++E
Sbjct: 1697 IWSQRLDLELGLSEPDPVIIRDVFKERTRVQGLKPLQAEKWFRRWTDWE 1745



 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 226/944 (23%), Positives = 430/944 (45%), Gaps = 165/944 (17%)

Query: 542  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 596
            V LG++V+  ++  VV    V  ++  +A+G S G +P +HL+D  L+H         P 
Sbjct: 535  VPLGAVVTCEIEKVVVDERGVSGLIVKVAEGIS-GFVPEQHLSDVRLQH---------PE 584

Query: 597  YEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 649
             +F Q       +L  + +   + L+ K +++NS   +      +     + G +  ++ 
Sbjct: 585  KKFRQGMKVKARVLSTNLDKKQMRLTLKKTIVNSEAPVVKSYDEVTVGMQIPGTIIKVLS 644

Query: 650  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
            +G  ++F G + GF P S+  +    D  + + +GQ V  ++LDV  E  R+ +S K   
Sbjct: 645  SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSCKDPS 704

Query: 710  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
                        F LE++ A+              +   +G V+  KV +  +  V V  
Sbjct: 705  A-----------FGLEKQNAL--------------KKLQLGDVVSAKVTQKTEDQVFVEL 739

Query: 770  EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 829
             + S +   I+   L   T +S S  Q A   +A  + L DL    V I    E + NR+
Sbjct: 740  AD-SQLKATISVGHL---TDKSNSKNQYAFKRIAVGQTLSDL----VII----EKDDNRR 787

Query: 830  A---QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS---------------------L 865
                  K    +ASK    ++T+    E+ KE  +V                       L
Sbjct: 788  VIVLSHKPSLLDASK----NRTLLTSFEMAKEGKIVAGFVRNITVTAVFVQFAGNLTALL 843

Query: 866  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSV-IATVMALPSSSTAGRLLLLLKAISET-E 923
            P+           D+   K         QS+ +  V  +P      R+++      E+ E
Sbjct: 844  PKARLPADVQDQPDFGMHKH--------QSIEVKIVSVIPDHQ---RIVVAPADFDESAE 892

Query: 924  TSSSKRAKKKSS----YDVGSLVQAEITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNV 978
             +   +A  K +     ++G++  A+IT +K  +L ++       GRI +++V D   ++
Sbjct: 893  LAKKGKASDKPAATDDIELGTITNAKITSVKDTQLNVQLANSKVQGRIDVSQVFDKWEDI 952

Query: 979  VE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSK 1028
            ++  +    +   Q ++ R++    AK +K  P   +S   + EL+ KPS +    +   
Sbjct: 953  LDPKDPLDKYNKKQNISVRVMGVHSAKDHKFLPFSHRSLHSVLELTAKPSDIEAKTL-KP 1011

Query: 1029 LLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIG 1088
            L  E  DV +G     +V     +   + +S  ++ ++  ++++ + S+L + +  F IG
Sbjct: 1012 LSLE--DVKVGDTHVAFVNNSSPQHLWVNLSPSVRGRINAMEASDDLSQLNDLEANFPIG 1069

Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1148
             A+   V +++     L L         S ++ + S+    + + +  ++ GR++K+   
Sbjct: 1070 SALKVRVTAVDVRNNRLDL---------SARSSNSSDAVTWSVLKQNMVLPGRVTKV--N 1118

Query: 1149 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE--GQFVKCKVLEIS 1206
               ++V++   + G VH  ++ +              FD ++  ++  G  V+  V+E+ 
Sbjct: 1119 ERQVLVKLSEAVSGPVHLPDMTD-------------DFDTINTLNQRKGDIVRVSVVELD 1165

Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1266
             + +    + LS R S   MSST        +    K +  +  L    IV+G+VKNV+ 
Sbjct: 1166 SSNK---RLRLSTRPSRI-MSST--------LPVKDKEISDVSQLDAGDIVRGFVKNVSD 1213

Query: 1267 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS- 1325
            KG F++L  ++ A V +SNLSD Y++  +  F + +LV GRV++V+ L++ VE++LK+S 
Sbjct: 1214 KGLFVLLGGQVTALVKISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSV 1273

Query: 1326 -DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVD 1383
             D      +  N++     G +V G++++VE +G FI I+ + N+ GLCH S+++E  V 
Sbjct: 1274 VDEDYTPPTTYNDIQE---GQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVK 1330

Query: 1384 NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN---DADN 1424
            +   +Y+ G+ VK ++L VD EKRR++ G+K S F++   D DN
Sbjct: 1331 DATKLYKEGDAVKARVLSVDAEKRRVAFGLKPSLFEDVDSDMDN 1374



 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 189/726 (26%), Positives = 318/726 (43%), Gaps = 76/726 (10%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--- 57
           +N+  G  +   V  +N  D+ + LP  L G   +   +  L   L+NE    +D+    
Sbjct: 137 KNLVKGSLVLAQVTRINNLDVEVALPNNLTGHISIVAVSQQLTERLENETADKDDDEEEE 196

Query: 58  --------LPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEG 108
                   L +IF VGQ L + +V  +++     GKR+I LSLR S    GL  + V   
Sbjct: 197 AEDDEGIDLKSIFAVGQYLRAYVVSTVEESTTGKGKRRIELSLRPSEANTGLEKDDVVPN 256

Query: 109 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRT 165
             + A V S++D G+++  G+ +   FL R+ +  +  ID   ++PG +    V S    
Sbjct: 257 ATVMASVASVQDRGFVMDTGIENLGAFLSRSEV--DKTIDEKRLQPGAVFLCQVISKGAN 314

Query: 166 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
            K+  LS     +           +I   +PG M    V +    G+    + +   T D
Sbjct: 315 GKIAQLSLQQKKIGNPKNLPTDATTIKTFLPGTMTDVLVSNTDRRGLAGKIMGHLDVTAD 374

Query: 226 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL------------ 271
           I H        +    Y    +  AR++   P +R   +G++L P++             
Sbjct: 375 IIHSGVGPAGVSLDTAYKIGSRAKARVICNFPGAREPKLGISLLPHITTLEKKRSTKSAD 434

Query: 272 HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 331
             + P   + +  + +   V  V+  +GL +DI    +S   +V IS V + +V  L + 
Sbjct: 435 SKKNPTQVLPISSLVETCTVRHVEADIGLFVDIGIPGLS--GFVHISRVKDGKVEALYES 492

Query: 332 ---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDS 386
              YK GS  + R++G+  ++GL     + S  E       DV  G VV  ++  + VD 
Sbjct: 493 SGPYKAGSEHKGRVVGYNEIDGLFQISFEKSVLEQEYLRLEDVPLGAVVTCEIEKVVVDE 552

Query: 387 FGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHK 441
            G    IV+   G+    P  H+S+  +  P KKF+ G ++  RVL   +  K++ +T K
Sbjct: 553 RGVSGLIVKVAEGISGFVPEQHLSDVRLQHPEKKFRQGMKVKARVLSTNLDKKQMRLTLK 612

Query: 442 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           KT+V S+  ++ SY E T  +   G I K+   G  ++F+  VQGF P SE+      +P
Sbjct: 613 KTIVNSEAPVVKSYDEVTVGMQIPGTIIKVLSSGAIIQFFGTVQGFLPISEMSEAYIKDP 672

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVV 555
              + +GQVV   ++   P  +R+ +S      F ++     +   ++LG +VS  V   
Sbjct: 673 KEHFRIGQVVSIHVLDVQPEDKRLVVSCKDPSAFGLEKQNALKK--LQLGDVVSAKVTQK 730

Query: 556 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV----------- 604
           T + V V  +A    K TI   HL D        KS  K  Y F ++ V           
Sbjct: 731 TEDQVFVE-LADSQLKATISVGHLTD--------KSNSKNQYAFKRIAVGQTLSDLVIIE 781

Query: 605 LDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
            D+    ++LS K SL+++++   L +         +V G+V NI  T  FV+F G LT 
Sbjct: 782 KDDNRRVIVLSHKPSLLDASKNRTLLTSFEMAKEGKIVAGFVRNITVTAVFVQFAGNLTA 841

Query: 663 FAPRSK 668
             P+++
Sbjct: 842 LLPKAR 847



 Score = 62.0 bits (149), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 159/364 (43%), Gaps = 46/364 (12%)

Query: 98   KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGI 147
            K LSLE V+ G    A+V +       ++   PS  G +            N+L  N  I
Sbjct: 1010 KPLSLEDVKVGDTHVAFVNNSSPQHLWVNLS-PSVRGRINAMEASDDLSQLNDLEANFPI 1068

Query: 148  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 207
                G  L+  V ++D     + LS+     S  VT  +  +  ++++PG     RV  +
Sbjct: 1069 ----GSALKVRVTAVDVRNNRLDLSARSSNSSDAVTWSV--LKQNMVLPG-----RVTKV 1117

Query: 208  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK--VNARILFVDPTSRAVGLT 265
             E  V++      +G V +  + + F T N     NQ K   V   ++ +D +++ + L+
Sbjct: 1118 NERQVLVKLSEAVSGPVHLPDMTDDFDTIN---TLNQRKGDIVRVSVVELDSSNKRLRLS 1174

Query: 266  LNP-YLLHNRAPPSHVKVGDI--YDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVT 316
              P  ++ +  P    ++ D+   D   +VR       D+GL +LL    T     A V 
Sbjct: 1175 TRPSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVT-----ALVK 1229

Query: 317  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKP 373
            IS++++  +++ +  ++    V+ R++    L       LK+S  +       T++D++ 
Sbjct: 1230 ISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQE 1289

Query: 374  GMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
            G VV GKV  V+ FGA +   G   V  LC    M+E  +    K +K G  +  RVL V
Sbjct: 1290 GQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSV 1349

Query: 432  KSKR 435
             +++
Sbjct: 1350 DAEK 1353



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 138/309 (44%), Gaps = 37/309 (11%)

Query: 1135 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            G +V   I K++    GV GL+V++   + G V    L ++ +  P     E +F     
Sbjct: 538  GAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHLSDVRLQHP-----EKKFR---- 588

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
              +G  VK +VL  +   +    + L+L+ ++              V++    ++  +++
Sbjct: 589  --QGMKVKARVLSTNLDKK---QMRLTLKKTI--------------VNSEAPVVKSYDEV 629

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
            +  M + G +  V S G  I     +   + +S +S+ Y++ P++ F IG++V+  VL V
Sbjct: 630  TVGMQIPGTIIKVLSSGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDV 689

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1371
            +P  KR+ V+ K  D       + N L  L +GD+V  ++ +     +F+ + ++ L   
Sbjct: 690  QPEDKRLVVSCK--DPSAFGLEKQNALKKLQLGDVVSAKVTQKTEDQVFVELADSQLKAT 747

Query: 1372 CHVSELSEDHVDNIETIYR---AGEKVK-VKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
              V  L++      +  ++    G+ +  + I++ D  +R I L  K S      +   +
Sbjct: 748  ISVGHLTDKSNSKNQYAFKRIAVGQTLSDLVIIEKDDNRRVIVLSHKPSLLDASKNRTLL 807

Query: 1428 SSEEESDEA 1436
            +S E + E 
Sbjct: 808  TSFEMAKEG 816



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 6/170 (3%)

Query: 369  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
            S +  G +V+G V  V   G  V   G V AL  + ++S+  I +    F+V   +  RV
Sbjct: 1196 SQLDAGDIVRGFVKNVSDKGLFVLLGGQVTALVKISNLSDRYIKEWKDHFQVDQLVKGRV 1255

Query: 429  LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGV 484
            + V   ++ + ++ K ++V       ++Y +  +  +  G + K+E+ G F+     + V
Sbjct: 1256 VAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQEGQVVTGKVRKVEEFGAFILIDGSDNV 1315

Query: 485  QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
             G   RS++      + + +Y  G  VK R++S     RR+  +F +KP+
Sbjct: 1316 SGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSVDAEKRRV--AFGLKPS 1363



 Score = 43.9 bits (102), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 125/299 (41%), Gaps = 37/299 (12%)

Query: 941  LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA-- 998
            ++   +T++   ++ +K      G +H+ ++ DD  + +  L  N + G  V   ++   
Sbjct: 1109 VLPGRVTKVNERQVLVKLSEAVSGPVHLPDMTDD-FDTINTL--NQRKGDIVRVSVVELD 1165

Query: 999  KSNKPDMKKSFLWELSIKPS--MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1056
             SNK          LS +PS  M +   +  K + +   +  G  V G+V  V ++   +
Sbjct: 1166 SSNK-------RLRLSTRPSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFV 1218

Query: 1057 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1116
             +   + A + I  S      ++E++  F + + V G V++++   KL R V    +  +
Sbjct: 1219 LLGGQVTALVKI--SNLSDRYIKEWKDHFQVDQLVKGRVVAVD---KLTRHVEMSLKSSV 1273

Query: 1117 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1176
             D+  D +       I EG +V G++ K+      +++    ++ G  H +++    V  
Sbjct: 1274 VDE--DYTPPTTYNDIQEGQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVK- 1330

Query: 1177 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL--DGMSSTNSSD 1233
                      D    Y EG  VK +VL +    R    V   L+ SL  D  S  ++SD
Sbjct: 1331 ----------DATKLYKEGDAVKARVLSVDAEKR---RVAFGLKPSLFEDVDSDMDNSD 1376



 Score = 40.4 bits (93), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 38/244 (15%)

Query: 954  LRLKFGI-GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1012
            L +  GI G  G +HI+ V D K   +      +K G     R++   N+ D     L++
Sbjct: 463  LFVDIGIPGLSGFVHISRVKDGKVEALYESSGPYKAGSEHKGRVVG-YNEIDG----LFQ 517

Query: 1013 LSIKPSMLTVS-------EIGSKLLFEECDVSIGQR-VTGYVYKVDNEWALLTISRHLKA 1064
            +S + S+L           +G+ +  E   V + +R V+G + KV    +     +HL  
Sbjct: 518  ISFEKSVLEQEYLRLEDVPLGAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHL-- 575

Query: 1065 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1124
                         LQ  +++F  G  V   VLS N +KK +RL L+        KT+  S
Sbjct: 576  ---------SDVRLQHPEKKFRQGMKVKARVLSTNLDKKQMRLTLK--------KTIVNS 618

Query: 1125 NDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
               +     E   G  + G I K+LS   G ++Q    + G +  +E+    + DP   +
Sbjct: 619  EAPVVKSYDEVTVGMQIPGTIIKVLS--SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHF 676

Query: 1182 DEGQ 1185
              GQ
Sbjct: 677  RIGQ 680


>gi|342879204|gb|EGU80461.1| hypothetical protein FOXB_09018 [Fusarium oxysporum Fo5176]
          Length = 1790

 Score =  203 bits (517), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 181/301 (60%), Gaps = 15/301 (4%)

Query: 1514 KNNRHAKKKEKEEREQEI-RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1572
            K+N   KKK +   E ++ R AE   L+ + P+T  ++ERL+   P+SS +WI YMAF +
Sbjct: 1474 KDNEKTKKKRRNRDEIQVDRTAE---LDANGPQTSSDYERLLLGQPDSSELWIAYMAFQM 1530

Query: 1573 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1632
             ++++ KAR +AERA+++INIREE EKLN+WVAY NLE  YG   ++ V +VF+RA QY 
Sbjct: 1531 QVSELSKAREVAERAIKSINIREETEKLNVWVAYLNLEVAYGT--KQTVEEVFKRACQYN 1588

Query: 1633 DPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQA 1689
            D ++VH  L  +Y ++E+ K AD L   M+KKF   S  VWL     L   +   +  +A
Sbjct: 1589 DAQEVHERLASIYIQSEKLKDADALFETMVKKFGAKSPNVWLNYAHFLHATRNDPDRARA 1648

Query: 1690 VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1747
            ++ RA   L        +S+ A LEF+  NG  +RGR+MF  +L+ YPK+ DLWS  LD 
Sbjct: 1649 LLPRATQQLGDRHSQTLVSRFAALEFRSPNGEPERGRTMFATLLAAYPKKGDLWSQLLDL 1708

Query: 1748 EIRLGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804
            EI L D D   IR +F+R   +  L PK  +  F+++ ++E+ +  + + + V  KA E+
Sbjct: 1709 EIGLSDADPTAIRDVFDRRTRVKGLKPKMAEKWFRRWADWEEKLDPKGK-DKVMAKAQEW 1767

Query: 1805 V 1805
             
Sbjct: 1768 A 1768



 Score =  181 bits (459), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 195/755 (25%), Positives = 336/755 (44%), Gaps = 62/755 (8%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--- 57
           +N+  G  +   V  +N  DL + LP  L G   +   +  L   L+NE    +D     
Sbjct: 135 KNLVKGSLVLAQVTRINNLDLEVALPNNLTGHISIVAMSQQLTDRLENETAEKDDEEDDE 194

Query: 58  --------LPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEG 108
                   L +IF VGQ +   V    ++      KR+I LSLR +    GL+ + V   
Sbjct: 195 AEDDEGIDLKSIFAVGQYLRAYVASTAEESTAGKSKRRIELSLRPNEANTGLAKDDVVPN 254

Query: 109 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRT 165
             + A + S+ED G+++  G+ +   FL ++ + +N  ID   ++PG +    V S    
Sbjct: 255 TTVMASIVSVEDRGFVMDTGIENLGAFLAKSEVDKN--IDEQRLQPGAVFLCQVTSKGAN 312

Query: 166 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
            K+  LS     +    +      +I+  +PG M    + +    G+    + +   T D
Sbjct: 313 GKIAQLSLQQKKIGNPKSVPADATTINTFLPGTMADVLISNTDRRGLSGKIMGHLDVTAD 372

Query: 226 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYL--LHNRAP----- 276
           I          +    Y    +V AR++   P +R   +G++L P++  L  + P     
Sbjct: 373 IIQSGAGPAGVSLDTAYKIGSRVKARVICNFPGAREPKLGISLLPHITALEKKRPTKSTD 432

Query: 277 ----PSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 331
               P+ V  +  + +   V  V+  +GL +DI    +S   +V IS V + +V  L + 
Sbjct: 433 SKKNPTQVLPISSLVETCTVRHVEPDIGLFVDIGIPGLS--GFVHISRVKDGKVEALYEA 490

Query: 332 ---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDS 386
              YK  S  + R++G+  ++GL     + S  E       DV  G VV   +  + +D 
Sbjct: 491 SGPYKVDSEHKGRVIGYNEMDGLFQISFEKSVLEQQYLRLEDVPIGAVVTCNIEKVLIDE 550

Query: 387 FGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHK 441
            G    +V+   G+    P  H S+ ++  P KKF+ G ++  RVL   +  K++ +T K
Sbjct: 551 KGVSGLVVKVAEGITGFVPEQHFSDVKLQHPEKKFRQGMKVKARVLSTNLSKKQMRLTLK 610

Query: 442 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           KTLV S+  ++ +Y EA+  +   G I KI+  G  ++F+  VQGF P SE+      +P
Sbjct: 611 KTLVNSEAPVIKAYEEASVGMQIPGTIIKIQSSGAIIQFFGAVQGFLPISEMSEAYIKDP 670

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-----VKLGSLVSGVVDVVT 556
              +  GQVV   ++   P S+R+ +S    P+    D       ++LG +VS  V   T
Sbjct: 671 KEHFRTGQVVSVHVLDVEPESKRLVVS-CKDPSAFGLDKQNALKKLQLGDIVSAKVTQKT 729

Query: 557 PNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSN-LL 613
            + V V  +A    K  +P  HL D    ++   +K +       D ++V  NE+   ++
Sbjct: 730 EDQVFVE-LADAQLKAILPVGHLTDKSTSKNQYALKRIAVGQTLSDLVIVEKNENRRAVI 788

Query: 614 LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AV 670
           LS K SL+++ +   L +         +V G+V NI  T  FV+F G +    P+++ A 
Sbjct: 789 LSHKPSLVSAGKDKTLLTSFEDAKEGKIVAGFVRNITVTAVFVQFGGAVNALLPKARLAA 848

Query: 671 DGQRADLSK-TYYVGQSVRSNILDVNSETGRITLS 704
           D Q  DL     +  QS+   I+ V  +  RI ++
Sbjct: 849 DIQ--DLPDFGMHKHQSIEVKIVSVIPDHKRIVVA 881



 Score =  177 bits (449), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 258/1123 (22%), Positives = 478/1123 (42%), Gaps = 179/1123 (15%)

Query: 360  AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA--LCPLPHMSEFEIVKPGKK 417
               G +  H DV   ++  G   A  S     +    VKA  +C  P   E         
Sbjct: 358  GLSGKIMGHLDVTADIIQSGAGPAGVSLDTAYKIGSRVKARVICNFPGAREP-------- 409

Query: 418  FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GC 476
             K+G  L+  +  ++ KR T +       +++  +SS  E          +  +E   G 
Sbjct: 410  -KLGISLLPHITALEKKRPTKSTDSKKNPTQVLPISSLVETCT-------VRHVEPDIGL 461

Query: 477  FVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 532
            FV     G+ GF   S +    ++   E S  Y V    K R++          +SF   
Sbjct: 462  FVDIGIPGLSGFVHISRVKDGKVEALYEASGPYKVDSEHKGRVIGYNEMDGLFQISF--- 518

Query: 533  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS----------KGTIPTEHLAD- 581
               V E   ++L  +  G V  VT N   V +  KG S           G +P +H +D 
Sbjct: 519  EKSVLEQQYLRLEDVPIGAV--VTCNIEKVLIDEKGVSGLVVKVAEGITGFVPEQHFSDV 576

Query: 582  HLEHATVMKSVIKPGYEFDQLLVLDNESS-NLLLSAKYSLINSAQQLPSDASHIHPNSVV 640
             L+H    +   + G +    ++  N S   + L+ K +L+NS   +            +
Sbjct: 577  KLQHP---EKKFRQGMKVKARVLSTNLSKKQMRLTLKKTLVNSEAPVIKAYEEASVGMQI 633

Query: 641  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 700
             G +  I  +G  ++F G + GF P S+  +    D  + +  GQ V  ++LDV  E+ R
Sbjct: 634  PGTIIKIQSSGAIIQFFGAVQGFLPISEMSEAYIKDPKEHFRTGQVVSVHVLDVEPESKR 693

Query: 701  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 760
            + +S K               F L+++ A+              +   +G ++  KV + 
Sbjct: 694  LVVSCKDPSA-----------FGLDKQNAL--------------KKLQLGDIVSAKVTQK 728

Query: 761  NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 820
             +  V V   + + +   +    L   T +S S  Q A+  +A  + L DL +       
Sbjct: 729  TEDQVFVELAD-AQLKAILPVGHL---TDKSTSKNQYALKRIAVGQTLSDLVI------- 777

Query: 821  FREANSNRQA---QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS------------- 864
              E N NR+A     K     A KD    +T+    E  KE  +V               
Sbjct: 778  -VEKNENRRAVILSHKPSLVSAGKD----KTLLTSFEDAKEGKIVAGFVRNITVTAVFVQ 832

Query: 865  --------LPEYNHSIGYASVSDYNTQKFPQKQFLNGQSV-IATVMALPSSSTAGRLLLL 915
                    LP+   +     + D+   K         QS+ +  V  +P      R+++ 
Sbjct: 833  FGGAVNALLPKARLAADIQDLPDFGMHKH--------QSIEVKIVSVIPDHK---RIVVA 881

Query: 916  LKAISET-----ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHIT 969
                 E+     +  +S +       + G++ +A+IT IK  +L ++       GRI ++
Sbjct: 882  PADFDESAELDKKAKASDKPAASDDIEFGTVAKAKITSIKDTQLNVQLVDSKVQGRIDVS 941

Query: 970  EVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSM 1019
            ++ D   ++ +  +    +   QTV+ R++    AK ++  P   +S   + EL+ KPS 
Sbjct: 942  QIFDKWEDIPDPKDPLDKYHKKQTVSVRVMGVHSAKDHRFLPFSHRSLHSVLELTAKPSD 1001

Query: 1020 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1079
            L    +   L  E  ++ +G     +V     +   + +S  ++ ++  ++++ + S+L 
Sbjct: 1002 LKAKTL-EPLSLE--NLKVGDTYVAFVNNSSPQHLWVNLSPSVRGRISAMEASDDLSQLN 1058

Query: 1080 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG 1139
            + +  F +G A+   V  ++   K L L  R      S +TV  S       + +  ++ 
Sbjct: 1059 DLEANFPVGSALKVRVTGVDARNKRLDLSARSSS---SSETVTWSA------LKQNMVLP 1109

Query: 1140 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE--GQF 1197
            GR++K+      ++V++   + G VH  ++ +              FD ++   +  G+ 
Sbjct: 1110 GRVTKV--NERQVLVKLSELVSGPVHLPDMAD-------------DFDTVNTLKQKKGEI 1154

Query: 1198 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1257
            V+  ++E+  + +    + LS R S   MSST        +    K +  +  L    IV
Sbjct: 1155 VRVSIVELDASNK---RLRLSTRPSRI-MSST--------LPVKDKEISDVSQLDAGDIV 1202

Query: 1258 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1317
            +G+VKNV+ KG F++L  ++ A V +SNLSD Y++  +  F I +LV GRV++V+  ++ 
Sbjct: 1203 RGFVKNVSDKGLFVLLGGQVTALVKISNLSDRYLKEWKDHFQIDQLVKGRVIAVDKQTRH 1262

Query: 1318 VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSE 1376
            VE++LK+S         I   +++  G +V G++++VE +G FI I+N+ N+ GLCH S+
Sbjct: 1263 VELSLKSSVVDEDYTPPI-TYNDIKEGQVVTGKVRKVEEFGAFILIDNSDNVSGLCHRSQ 1321

Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
            ++E+ V +   +Y+ G+ VK ++L+VD  KRR++ G+K S F+
Sbjct: 1322 MAENPVKDATKLYKEGDAVKARVLEVDINKRRVTFGLKPSLFE 1364



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 139/312 (44%), Gaps = 43/312 (13%)

Query: 1135 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRV---HFTELKNICVSDPLSGYDEGQFDP 1188
            G +V   I K+L    GV GLVV++   + G V   HF+++K                 P
Sbjct: 536  GAVVTCNIEKVLIDEKGVSGLVVKVAEGITGFVPEQHFSDVK--------------LQHP 581

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
               + +G  VK +VL  + + +    + L+L+ +L              V++    ++  
Sbjct: 582  EKKFRQGMKVKARVLSTNLSKK---QMRLTLKKTL--------------VNSEAPVIKAY 624

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            E+ S  M + G +  + S G  I     +   + +S +S+ Y++ P++ F  G++V+  V
Sbjct: 625  EEASVGMQIPGTIIKIQSSGAIIQFFGAVQGFLPISEMSEAYIKDPKEHFRTGQVVSVHV 684

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
            L VEP SKR+ V+ K  D       + N L  L +GDIV  ++ +     +F+ + +  L
Sbjct: 685  LDVEPESKRLVVSCK--DPSAFGLDKQNALKKLQLGDIVSAKVTQKTEDQVFVELADAQL 742

Query: 1369 VGLCHVSELSEDHVDNIETIYR---AGEKVK-VKILKVDKEKRRISLGMKSSYFKNDADN 1424
              +  V  L++      +   +    G+ +  + I++ ++ +R + L  K S      D 
Sbjct: 743  KAILPVGHLTDKSTSKNQYALKRIAVGQTLSDLVIVEKNENRRAVILSHKPSLVSAGKDK 802

Query: 1425 LQMSSEEESDEA 1436
              ++S E++ E 
Sbjct: 803  TLLTSFEDAKEG 814



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 165/375 (44%), Gaps = 52/375 (13%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGIDV 149
            LSLE ++ G    A+V +       ++   PS  G +            N+L  N  +  
Sbjct: 1010 LSLENLKVGDTYVAFVNNSSPQHLWVNLS-PSVRGRISAMEASDDLSQLNDLEANFPV-- 1066

Query: 150  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 209
              G  L+  V  +D   K + LS+   + S+ VT     +  ++++PG     RV  + E
Sbjct: 1067 --GSALKVRVTGVDARNKRLDLSARSSSSSETVT--WSALKQNMVLPG-----RVTKVNE 1117

Query: 210  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK--VNARILFVDPTSRAVGLTLN 267
              V++      +G V +  + + F T N      Q K   V   I+ +D +++ + L+  
Sbjct: 1118 RQVLVKLSELVSGPVHLPDMADDFDTVN---TLKQKKGEIVRVSIVELDASNKRLRLSTR 1174

Query: 268  P-YLLHNRAPPSHVKVGDI--YDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVTIS 318
            P  ++ +  P    ++ D+   D   +VR       D+GL +LL    T     A V IS
Sbjct: 1175 PSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVT-----ALVKIS 1229

Query: 319  DVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE-GLATGILKASAFEGLVFTHSDVKP 373
            ++++  +++ +  ++    V+ R++      RH+E  L + ++       +  T++D+K 
Sbjct: 1230 NLSDRYLKEWKDHFQIDQLVKGRVIAVDKQTRHVELSLKSSVVDEDYTPPI--TYNDIKE 1287

Query: 374  GMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
            G VV GKV  V+ FGA  ++     V  LC    M+E  +    K +K G  +  RVL V
Sbjct: 1288 GQVVTGKVRKVEEFGAFILIDNSDNVSGLCHRSQMAENPVKDATKLYKEGDAVKARVLEV 1347

Query: 432  --KSKRITVTHKKTL 444
                +R+T   K +L
Sbjct: 1348 DINKRRVTFGLKPSL 1362


>gi|407404924|gb|EKF30181.1| rRNA biogenesis protein, putative [Trypanosoma cruzi marinkellei]
          Length = 671

 Score =  203 bits (517), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 185/305 (60%), Gaps = 11/305 (3%)

Query: 1514 KNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1573
            K N   ++K ++ + +E   A ER +E  AP +PDEF RL+ ++PN+S++W+++MA  ++
Sbjct: 329  KKNGGGEQKLRKRKIEEAIDAYERSMETAAPSSPDEFRRLLMAAPNNSYLWVQWMAHHVA 388

Query: 1574 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC- 1632
            +   E+AR +AE+AL TI +RE  E+LN+WVAY NLEN +G    E++  VF+RALQ+  
Sbjct: 389  LQQQEEARLVAEKALSTIGVRETQERLNVWVAYMNLENIHGT--MESLSAVFKRALQHAP 446

Query: 1633 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVV 1691
            DP  V+  L  ++  T +      L   M+ KF++  + W R  + L+ Q +++ ++ +V
Sbjct: 447  DPLVVYERLADIFSATRKPNQLLALCRTMVSKFRNEQRTWERLGKVLIDQKKRDQLRRIV 506

Query: 1692 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1751
            +    +L R  +   + + A+ E+KNG  + GR++FEG++   PK++D+WS YLDQE+ L
Sbjct: 507  KDMSGALRRDAYSLTVVRLAVYEYKNGSVENGRALFEGLVVRMPKKSDVWSAYLDQEMAL 566

Query: 1752 -------GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804
                     V L+R L ERA++ +   K M+    +++ +E++ G    +E VK +A  Y
Sbjct: 567  LVRRDESAAVPLVRALLERAVATNFSAKVMQQFLTRFMSFERTYGTPADVEKVKTRARSY 626

Query: 1805 VESTL 1809
            VE+ +
Sbjct: 627  VEAKI 631


>gi|66359862|ref|XP_627109.1| RRP5 like protein involved in rRNA biogenesis with 7 S1 domains and 5
            HAT repeats [Cryptosporidium parvum Iowa II]
 gi|46228533|gb|EAK89403.1| RRP5 like protein involved in rRNA biogenesis with 7 S1 domains and 5
            HAT repeats [Cryptosporidium parvum Iowa II]
          Length = 2002

 Score =  203 bits (516), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 180/660 (27%), Positives = 314/660 (47%), Gaps = 110/660 (16%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV--ESPEKEFPI 1300
            K +E    +    I+ GYV N   +G F+ + R+L  ++ L  L+ G +  E   + F I
Sbjct: 1349 KEIESFSQVKVGSILSGYVCNSGKEGVFVRVGRELVGRIKLRELTSGTITPEEASRRFFI 1408

Query: 1301 GKLVAGRVL-SVEPLSKRVEVT----------LKTSDSRTASQSE--------------- 1334
            GK +   V+ ++    K+V+++          L+ S   T  Q E               
Sbjct: 1409 GKFINQMVVVNINKDEKKVDLSISKLESDDIKLRLSQIETKKQVESEDEYVDMGIDKEVD 1468

Query: 1335 --------------IN---NLSNLHVGDIVIGQIKRV-ESYGLFITIENT--NLVGLCHV 1374
                          IN   +  +L++G ++ G I  V + +GLFI + +   +L  LC +
Sbjct: 1469 LGNKVKKMAQSLGDINEKLSFEDLYIGRVLTGVIINVSKKHGLFIRLNDIKDDLTALCKL 1528

Query: 1375 SEL--SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN----DADNLQMS 1428
            SE      + + I +++  G+ V  K+LK + EKRR+ +G+K SYF      + DNL   
Sbjct: 1529 SECLDGRSNRNKISSVFNVGDNVLCKVLKFNSEKRRVWVGIKPSYFSELKGEEGDNLSFE 1588

Query: 1429 SEEESD-EAIEEVGSYNRSSLLE-NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVN 1486
            + +  D E++E V S N   L +   ++ + D  +E  +   +   + E       LEV 
Sbjct: 1589 NNQLMDIESVETVESENEEELKDVEMTLGLNDEGLEYRESDHMNDGE-EDFLGNRNLEVM 1647

Query: 1487 LDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA--- 1543
             +D + +     SQ      E+K ++        +K+K +R+ E         EK     
Sbjct: 1648 KEDSEYEK----SQESESKLESKNLN--------RKQKVQRQLEHEHRIREEEEKGMRSH 1695

Query: 1544 --PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
              P T D+FERL+ +  + S +WI+YM++ L + D++KAR +AER+L+ I+++EE E+ N
Sbjct: 1696 LNPSTIDDFERLLITHRDVSSLWIRYMSYYLDLEDLDKARMVAERSLKQISVKEEMERWN 1755

Query: 1602 IWVAYFNLENEYGNP----------------PEEAVVK----VFQRAL-QYCDPKKVHLA 1640
            IW+AY N+E  YG                   E+ + K    +  RAL    D KK+++ 
Sbjct: 1756 IWIAYINMEIVYGKNELLTSTGENNISSLRGKEDGIPKNVRQILDRALMNVTDQKKLYIQ 1815

Query: 1641 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSL 1698
            +     R  + +    LL + +KKF+ S K+W+  +  L +   Q++    V+Q++L S+
Sbjct: 1816 IFSSLRRHSKEEQGLALLEEGLKKFQTSRKLWVTYLTCLYESDNQKKARDEVIQKSLKSV 1875

Query: 1699 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD----- 1753
             + K ++ I+  A LEF+ G  +RGR++FE +L E  KR DLWS Y D   +L       
Sbjct: 1876 SKDKVVRLITDIARLEFEYGNINRGRTIFENLLEENSKRMDLWSQYFDILTKLCSKDNPK 1935

Query: 1754 --------VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
                    +++ R +F   I  +  P+ MK +F ++L +EK  G  +  ++V+  A+ YV
Sbjct: 1936 SNSSMADHIEMARSIFSSCIEKNFKPRSMKMIFTRWLSFEKEFGSLQSQKHVQDLAINYV 1995



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 99/211 (46%), Gaps = 19/211 (9%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANED---NLLPT 60
           +++  G  L+GV+  V+EK+L+I LPG    +    + L+      IE  ++     L  
Sbjct: 45  RDLKLGTLLFGVIDHVSEKELIISLPGSNTAIISIENTLEDSRTIPIELFQELKKKSLED 104

Query: 61  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQE---GMVLTAYVKS 117
            F VGQ V+  ++  +  K  I       +L+ S+L  GL+  +      G V++A + S
Sbjct: 105 RFSVGQFVNGAIISNNKIKNNI-------TLKPSILNAGLNSNSKCLNVFGYVISALIIS 157

Query: 118 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS--DP 175
            E+HG+ ++ G+        +  + E+   + + G +L   +    + + ++  +   D 
Sbjct: 158 KENHGFNIYTGIQGVKTVFMK--VEESEFKEYRLGQILPVSIHQFFKEKSLLICTPIYDQ 215

Query: 176 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 206
           +  SK   K++  +SI  + PG+MV   + +
Sbjct: 216 NENSKIGRKEI--LSIHEIKPGLMVECLIHA 244


>gi|312374936|gb|EFR22395.1| hypothetical protein AND_15302 [Anopheles darlingi]
          Length = 1641

 Score =  202 bits (515), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 113/295 (38%), Positives = 172/295 (58%), Gaps = 7/295 (2%)

Query: 1517 RHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1575
            R    K++EER   +R  EE L +  A P TPD+F+RLV + PN+S +WI+YMAF +  A
Sbjct: 1337 RFEAMKQEEER---LRKIEEELADPSATPHTPDQFDRLVMAQPNNSMLWIRYMAFHMESA 1393

Query: 1576 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
            +++KAR++A +AL+ IN REE E LN+W+A  NLE  Y     +   +V   A+QY D  
Sbjct: 1394 ELDKARTVARKALKAINFREEAELLNVWIALLNLELRYETV--DTFKEVLTEAIQYNDAF 1451

Query: 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRA 1694
            KV+  +L +    ++     ELL  ++KKF+    +W        +  Q    + ++ +A
Sbjct: 1452 KVYRRVLDILIDCQKVSEVSELLELLVKKFRKENDMWYLVADAWYRIGQTNKAKPLLSQA 1511

Query: 1695 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1754
            L SLP   HI  I + A L  ++G  D    +FE IL+ YPKRTD+WS Y+D  ++ G +
Sbjct: 1512 LKSLPNRDHIPLIVKFAFLHNRHGNRDEAHLLFEQILTSYPKRTDIWSQYVDMLVKDGLI 1571

Query: 1755 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
            +  R + ERAI   LP K MK L+ KY+ +E+  G+ + +  VKQ A +YV++ L
Sbjct: 1572 EEARQILERAIVQRLPMKNMKTLYTKYVTFEEKHGDRDSVRRVKQMAADYVQAQL 1626



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 139/613 (22%), Positives = 254/613 (41%), Gaps = 52/613 (8%)

Query: 6   ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN------LLP 59
           +  GM + G V    +  + + LPG + G      A+       ++A  D        L 
Sbjct: 82  LQTGMLVLGCVQRTFKTHMEVTLPGRITGTV-PVPAISEAYTKRLQAMIDRQSFDCPTLD 140

Query: 60  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 119
            ++ V +LV   V++     K+   R++ LSL    L+   +   +  G+VL+A +   E
Sbjct: 141 DLYKVNELVYVKVME-----KQTSPRQLTLSLNPHDLHSSFTANQLVPGLVLSATLSIEE 195

Query: 120 DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 179
           DHGY +  G+ +   FLP+ NL +NS    + G  L   +  + R    V +        
Sbjct: 196 DHGYTMDVGIRNVRAFLPKENLCKNS---TEIGRNLFCSIEKVTRQGTTVTIILKAFRPK 252

Query: 180 KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 239
           +    ++   +++ +VPG +V   V S++++G+     T F  TV  F  +      N K
Sbjct: 253 ESRLLNVSMTNLETIVPGCVVPFTVGSVVKHGLR---GTLFDDTVAAFVNETMLTQPNSK 309

Query: 240 ND-YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS-HVKVGDIYDQSKVVRVDRG 297
            + Y   ++++A +L+V P ++ V ++L  Y   NRA  S     G+  + + VV V   
Sbjct: 310 PESYTMFQQLDATVLYVMPVTKHVFVSLAKY-PGNRAENSVAYAAGETIENAHVVTVTSA 368

Query: 298 LGLLLDIPSTPVSTPAYVTISDVA---EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 354
              L          P  V +  +    EE V  +  KY  GS   +RIL +   + L   
Sbjct: 369 GAWLQFAKEYRALLPKSVIMKRIKGNYEESV--VMSKYHVGSVHTLRILRY---DPLNRT 423

Query: 355 ILKASAFEGLV--FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 412
            +     +  V   T  D++ G + + +V  +   G      G V+           + V
Sbjct: 424 FIVCDTLDNAVDELTLQDIQIGEIYQMRVKKLLDAGGFFVEQGAVRGSVSREWFDRTQHV 483

Query: 413 KPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA--EATDRLIT------ 464
           K G + +V A ++F      +  +  T+   L+K  + ILSS    E  + ++T      
Sbjct: 484 KEGARVQVRA-MMFE---PSTPFVQFTNLPDLLKKGIRILSSREQLENANSILTAPEAKQ 539

Query: 465 -HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 523
            HG + +  +    ++F N ++G   +    ++          VG VV+  +     A++
Sbjct: 540 FHGLVVQETRDYFMIKFANDIKGLLMKHLRDMEQDTAKMHTLRVGSVVQVTVHQYNFATQ 599

Query: 524 RINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 583
           ++ LS  +  T         + +L    V  V P  V + V+ +  SKGTIP ++ +D  
Sbjct: 600 KLLLSLPLHSTDT-------VSTLTEATVIAVLPTGVEI-VLKEDRSKGTIPLQYFSDFA 651

Query: 584 EHATVMKSVIKPG 596
            H  +    +K G
Sbjct: 652 AHNPLYVGQLKEG 664


>gi|46111359|ref|XP_382737.1| hypothetical protein FG02561.1 [Gibberella zeae PH-1]
          Length = 1782

 Score =  202 bits (515), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/289 (38%), Positives = 179/289 (61%), Gaps = 11/289 (3%)

Query: 1506 DEAKTIDEKNNRHAKKKEKEEREQ-EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1564
            DE ++  E+  + A+K +K+ R + E++      L+ + P+T  ++ERL+   P+SS +W
Sbjct: 1457 DEPESESEEQAKDAEKPKKKRRTRDEVQIDRTAELDTNGPQTSSDYERLLLGQPDSSELW 1516

Query: 1565 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1624
            I Y+AF + +A++ KAR +AERA++TINIREE EKLN+WVAY NLE  YG   ++ V +V
Sbjct: 1517 IAYLAFQMQVAELSKAREVAERAIKTINIREETEKLNVWVAYLNLEVAYGT--KQTVEEV 1574

Query: 1625 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LK 1681
            F+RA QY D +++H  L  +Y ++E+ K AD L   M+KKF   S  VWL     L   +
Sbjct: 1575 FKRACQYNDQQEIHERLASVYIQSERLKDADALFETMVKKFGAKSPNVWLNYAHFLHATR 1634

Query: 1682 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTD 1739
             + +G +A++ RA   L +  H   +++ A LEF+  NG  +RGR+MF G+L  +PK+ D
Sbjct: 1635 NKPDGARALLPRATQQLGKSHHTNLMTRFAALEFRSPNGEPERGRTMFAGLLEAFPKKGD 1694

Query: 1740 LWSIYLDQEIRLGDVD--LIRGLFE-RAISLSLPPKKMKFLFKKYLEYE 1785
            +WS  LD E+ L + D  +IR +F+ R     L P + +  F+++  +E
Sbjct: 1695 IWSQRLDLELGLSEPDPVIIRDVFKARTRVQGLKPLQAEKWFRRWTAWE 1743



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 174/658 (26%), Positives = 292/658 (44%), Gaps = 62/658 (9%)

Query: 58  LPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
           L +IF VGQ L + +V  +++     GKR+I LSLR S    GL  + V     + A V 
Sbjct: 204 LKSIFAVGQYLRAYVVSTVEESTTGKGKRRIELSLRPSEANTGLEKDDVVPNATVMASVA 263

Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSS 173
           S++D G+++  G+ +   FL R+ +  +  ID   ++PG +    V S     K+  LS 
Sbjct: 264 SVQDRGFVMDTGIENLGAFLSRSEV--DKTIDEKRLQPGAVFLCQVISKGANGKIAQLSL 321

Query: 174 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
               +           +I   +PG M    V +    G+    + +   T DI H     
Sbjct: 322 QQKKIGNPKNLPTDATTIKTFLPGTMTDVLVSNTDRRGLAGKIMGHLDVTADIIHSGVGP 381

Query: 234 PTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL------------HNRAPPSH 279
              +    Y    +  AR++   P +R   +G++L P++               + P   
Sbjct: 382 AGVSLDTAYKIGSRAKARVICNFPGAREPKLGISLLPHITTLEKKRSTKSTDSKKNPTQV 441

Query: 280 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGS 336
           + +  + +   V  V+  +GL +DI    +S   +V IS V + +V  L +    YK GS
Sbjct: 442 LPISSLVETCTVRHVEADIGLFVDIGIPGLS--GFVHISRVKDGKVEALYESSGPYKAGS 499

Query: 337 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IV 391
             + R++G+  ++GL     + S  E       DV  G VV  ++  + VD  G    IV
Sbjct: 500 EHKGRVVGYNEIDGLFQISFEKSVLEQEYLRLEDVPLGAVVTCEIEKVVVDERGVSGLIV 559

Query: 392 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 449
           +   G+    P  H+S+  +  P KKF+ G ++  RVL   +  K++ +T KKT+V S+ 
Sbjct: 560 KVAEGISGFVPEQHLSDVRLQHPEKKFRQGMKVKARVLSTNLDKKQMRLTLKKTIVNSEA 619

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
            ++ SY E T  +   G I K+   G  ++F+  VQGF P SE+      +P   + +GQ
Sbjct: 620 PVVKSYDEVTVGMQIPGTIIKVLSSGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQ 679

Query: 510 VVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY 563
           VV   ++   P  +R+ +S      F ++     +   ++L  +VS  V   T + V V 
Sbjct: 680 VVSIHVLDVQPEDKRLVVSCKDPSAFGLEKQNALKK--LQLSDVVSAKVTQKTEDQVFVE 737

Query: 564 VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-----------LDNESSNL 612
            +A    K TI   HL D        KS  K  Y F ++ V            D+    +
Sbjct: 738 -LADSQLKATISVGHLTD--------KSNSKNQYAFKRIAVGQTLSDLVIIEKDDNRRVI 788

Query: 613 LLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
           +LS K SL+++++   L +         +V G+V NI  T  FV+F G LT   P+++
Sbjct: 789 VLSHKPSLLDASKNRTLLTSFEKAKEGKIVAGFVRNITVTAVFVQFAGNLTALLPKAR 846



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 161/395 (40%), Gaps = 57/395 (14%)

Query: 938  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
            VG    A +    P  L +       GRI+  E +DD S  + +L +NF IG  +  R+ 
Sbjct: 1018 VGDTHVAFVNNSSPQHLWVNLSPSVRGRINAMEASDDLSQ-LNDLEANFPIGSALKVRVT 1076

Query: 998  A---KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1054
            A   ++N+ D+        S     +T S +   ++             G V KV+    
Sbjct: 1077 AVDVRNNRLDLSA----RSSNSSDAVTWSALKQNMVL-----------PGRVTKVNERQV 1121

Query: 1055 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1114
            L+ +S  +   + + D   +   +    +R   G  V   V+ ++   K LRL  RP + 
Sbjct: 1122 LVKLSEAVSGPVHLPDMTDDFDTINTLNQR--KGDIVRVSVVELDSSNKRLRLSTRPSR- 1178

Query: 1115 GISDKTVDISNDNMQ--TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1172
             I   T+ I +  +   + +  GDIV G +  +     GL V +G  +   V  + L + 
Sbjct: 1179 -IMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSD--KGLFVLLGGQVTALVKISNLSDR 1235

Query: 1173 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1232
             + +     D  Q D        Q VK +V+ + +  R   HVE+SL+SS+         
Sbjct: 1236 YIKE---WKDHFQVD--------QLVKGRVVAVDKLTR---HVEMSLKSSV--------- 1272

Query: 1233 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGY 1290
             +  D   P  +     D+    +V G V+ V   G FI++  S  +      S +++  
Sbjct: 1273 -VDEDYTPPTTY----NDIQEGQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQA 1327

Query: 1291 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
            V+   K +  G  V  RVLSV+   +RV   LK S
Sbjct: 1328 VKDATKLYKEGDAVKARVLSVDAEKRRVTFGLKPS 1362



 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 160/368 (43%), Gaps = 46/368 (12%)

Query: 98   KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGI 147
            K LSLE V+ G    A+V +       ++   PS  G +            N+L  N  I
Sbjct: 1009 KPLSLEDVKVGDTHVAFVNNSSPQHLWVNLS-PSVRGRINAMEASDDLSQLNDLEANFPI 1067

Query: 148  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 207
                G  L+  V ++D     + LS+     S  VT     +  ++++PG     RV  +
Sbjct: 1068 ----GSALKVRVTAVDVRNNRLDLSARSSNSSDAVT--WSALKQNMVLPG-----RVTKV 1116

Query: 208  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK--VNARILFVDPTSRAVGLT 265
             E  V++      +G V +  + + F T N     NQ K   V   ++ +D +++ + L+
Sbjct: 1117 NERQVLVKLSEAVSGPVHLPDMTDDFDTIN---TLNQRKGDIVRVSVVELDSSNKRLRLS 1173

Query: 266  LNP-YLLHNRAPPSHVKVGDI--YDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVT 316
              P  ++ +  P    ++ D+   D   +VR       D+GL +LL    T     A V 
Sbjct: 1174 TRPSRIMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVT-----ALVK 1228

Query: 317  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKP 373
            IS++++  +++ +  ++    V+ R++    L       LK+S  +       T++D++ 
Sbjct: 1229 ISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQE 1288

Query: 374  GMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
            G VV GKV  V+ FGA +   G   V  LC    M+E  +    K +K G  +  RVL V
Sbjct: 1289 GQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSV 1348

Query: 432  KSKRITVT 439
             +++  VT
Sbjct: 1349 DAEKRRVT 1356



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 139/321 (43%), Gaps = 35/321 (10%)

Query: 418  FKVGAELVFRV--LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 475
            F +G+ L  RV  + V++ R+ ++ + +   S  A+  +++     ++  G +TK+ +  
Sbjct: 1065 FPIGSALKVRVTAVDVRNNRLDLSARSS--NSSDAV--TWSALKQNMVLPGRVTKVNERQ 1120

Query: 476  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
              V+    V G     ++  D     +     G +V+  ++    +++R+ LS   +P+R
Sbjct: 1121 VLVKLSEAVSGPVHLPDMTDDFDTINTLNQRKGDIVRVSVVELDSSNKRLRLS--TRPSR 1178

Query: 536  VSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 583
            +    L            +  G +V G V  V+   +  +V+  G     +   +L+D  
Sbjct: 1179 IMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSDKGL--FVLLGGQVTALVKISNLSDRY 1236

Query: 584  EHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 638
                      K  ++ DQL+      +D  + ++ +S K S+++     P+  + I    
Sbjct: 1237 IKE------WKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQEGQ 1290

Query: 639  VVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
            VV G V  + E G F+   G   ++G   RS+  +    D +K Y  G +V++ +L V++
Sbjct: 1291 VVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSVDA 1350

Query: 697  ETGRITLSLKQSCCSSTDASF 717
            E  R+T  LK S     D+  
Sbjct: 1351 EKRRVTFGLKPSLFEDVDSDM 1371



 Score = 60.5 bits (145), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 138/309 (44%), Gaps = 37/309 (11%)

Query: 1135 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            G +V   I K++    GV GL+V++   + G V    L ++ +  P     E +F     
Sbjct: 537  GAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHLSDVRLQHP-----EKKFR---- 587

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
              +G  VK +VL  +   +    + L+L+ ++              V++    ++  +++
Sbjct: 588  --QGMKVKARVLSTNLDKK---QMRLTLKKTI--------------VNSEAPVVKSYDEV 628

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
            +  M + G +  V S G  I     +   + +S +S+ Y++ P++ F IG++V+  VL V
Sbjct: 629  TVGMQIPGTIIKVLSSGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDV 688

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1371
            +P  KR+ V+ K  D       + N L  L + D+V  ++ +     +F+ + ++ L   
Sbjct: 689  QPEDKRLVVSCK--DPSAFGLEKQNALKKLQLSDVVSAKVTQKTEDQVFVELADSQLKAT 746

Query: 1372 CHVSELSEDHVDNIETIYR---AGEKVK-VKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
              V  L++      +  ++    G+ +  + I++ D  +R I L  K S      +   +
Sbjct: 747  ISVGHLTDKSNSKNQYAFKRIAVGQTLSDLVIIEKDDNRRVIVLSHKPSLLDASKNRTLL 806

Query: 1428 SSEEESDEA 1436
            +S E++ E 
Sbjct: 807  TSFEKAKEG 815



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 154/354 (43%), Gaps = 37/354 (10%)

Query: 24   LVICLPGGLRGLARAADALDPILD-NEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEI 82
            L + L   +RG   A +A D +   N++EAN        F +G  +   V  +D     +
Sbjct: 1034 LWVNLSPSVRGRINAMEASDDLSQLNDLEAN--------FPIGSALKVRVTAVD-----V 1080

Query: 83   GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG--------LPSFTG 134
               ++ LS R S     ++   +++ MVL   V  + +   ++           LP  T 
Sbjct: 1081 RNNRLDLSARSSNSSDAVTWSALKQNMVLPGRVTKVNERQVLVKLSEAVSGPVHLPDMT- 1139

Query: 135  FLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLKGISID 192
                ++    + ++ + G +++  V  +D + K + LS+ P  +  S    KD +   + 
Sbjct: 1140 ----DDFDTINTLNQRKGDIVRVSVVELDSSNKRLRLSTRPSRIMSSTLPIKDKEISDVS 1195

Query: 193  LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 252
             L  G +V   V+++ + G+ +      T  V I +L + +    WK+ +   + V  R+
Sbjct: 1196 QLDAGDIVRGFVKNVSDKGLFVLLGGQVTALVKISNLSDRY-IKEWKDHFQVDQLVKGRV 1254

Query: 253  LFVDPTSRAVGLTLNPYLL-HNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 308
            + VD  +R V ++L   ++  +  PP+    ++ G +    KV +V+     +L   S  
Sbjct: 1255 VAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQEGQVV-TGKVRKVEEFGAFILIDGSDN 1313

Query: 309  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 362
            VS   +   S +AE+ V+   K YKEG  V+ R+L     +   T  LK S FE
Sbjct: 1314 VSGLCHR--SQMAEQAVKDATKLYKEGDAVKARVLSVDAEKRRVTFGLKPSLFE 1365



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 38/223 (17%)

Query: 605  LDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
            LD+ +  L LS + S I S+  LP      SD S +    +V G+V N+ + G FV   G
Sbjct: 1163 LDSSNKRLRLSTRPSRIMSST-LPIKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGG 1221

Query: 659  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 718
            ++T     S   D    +    + V Q V+  ++ V+  T  + +SLK        +S +
Sbjct: 1222 QVTALVKISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLK--------SSVV 1273

Query: 719  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 778
             E +        +Q                 G V+ GKV +  +FG  +  +   +V G 
Sbjct: 1274 DEDYTPPTTYNDIQE----------------GQVVTGKVRKVEEFGAFILIDGSDNVSGL 1317

Query: 779  ITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 814
                Q+A   V+        G  ++A +L V   +R V   LK
Sbjct: 1318 CHRSQMAEQAVKDATKLYKEGDAVKARVLSVDAEKRRVTFGLK 1360



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 22/181 (12%)

Query: 542 VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 596
           V LG++V+  ++  VV    V  ++  +A+G S G +P +HL+D  L+H         P 
Sbjct: 534 VPLGAVVTCEIEKVVVDERGVSGLIVKVAEGIS-GFVPEQHLSDVRLQH---------PE 583

Query: 597 YEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 649
            +F Q       +L  + +   + L+ K +++NS   +      +     + G +  ++ 
Sbjct: 584 KKFRQGMKVKARVLSTNLDKKQMRLTLKKTIVNSEAPVVKSYDEVTVGMQIPGTIIKVLS 643

Query: 650 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
           +G  ++F G + GF P S+  +    D  + + +GQ V  ++LDV  E  R+ +S K   
Sbjct: 644 SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSCKDPS 703

Query: 710 C 710
            
Sbjct: 704 A 704



 Score = 47.4 bits (111), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 135/315 (42%), Gaps = 35/315 (11%)

Query: 924  TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 983
            +S+S  A   S+     ++   +T++   ++ +K      G +H+ ++ DD  + +  L 
Sbjct: 1091 SSNSSDAVTWSALKQNMVLPGRVTKVNERQVLVKLSEAVSGPVHLPDMTDD-FDTINTL- 1148

Query: 984  SNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPS--MLTVSEIGSKLLFEECDVSIG 1039
             N + G  V   ++    SNK          LS +PS  M +   I  K + +   +  G
Sbjct: 1149 -NQRKGDIVRVSVVELDSSNK-------RLRLSTRPSRIMSSTLPIKDKEISDVSQLDAG 1200

Query: 1040 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1099
              V G+V  V ++   + +   + A + I  S      ++E++  F + + V G V++++
Sbjct: 1201 DIVRGFVKNVSDKGLFVLLGGQVTALVKI--SNLSDRYIKEWKDHFQVDQLVKGRVVAVD 1258

Query: 1100 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1159
               KL R V    +  + D+  D +       I EG +V G++ K+      +++    +
Sbjct: 1259 ---KLTRHVEMSLKSSVVDE--DYTPPTTYNDIQEGQVVTGKVRKVEEFGAFILIDGSDN 1313

Query: 1160 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI-SRTVRGTFHVELS 1218
            + G  H +++    V            D    Y EG  VK +VL + +   R TF ++ S
Sbjct: 1314 VSGLCHRSQMAEQAVK-----------DATKLYKEGDAVKARVLSVDAEKRRVTFGLKPS 1362

Query: 1219 LRSSLDGMSSTNSSD 1233
            L   +D  S  ++SD
Sbjct: 1363 LFEDVD--SDMDNSD 1375



 Score = 41.2 bits (95), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 102/477 (21%), Positives = 189/477 (39%), Gaps = 80/477 (16%)

Query: 954  LRLKFGI-GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1012
            L +  GI G  G +HI+ V D K   +      +K G     R++   N+ D     L++
Sbjct: 462  LFVDIGIPGLSGFVHISRVKDGKVEALYESSGPYKAGSEHKGRVVG-YNEIDG----LFQ 516

Query: 1013 LSIKPSMLTVS-------EIGSKLLFEECDVSIGQR-VTGYVYKVDNEWALLTISRHLKA 1064
            +S + S+L           +G+ +  E   V + +R V+G + KV    +     +HL  
Sbjct: 517  ISFEKSVLEQEYLRLEDVPLGAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHL-- 574

Query: 1065 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1124
                         LQ  +++F  G  V   VLS N +KK +RL L+        KT+  S
Sbjct: 575  ---------SDVRLQHPEKKFRQGMKVKARVLSTNLDKKQMRLTLK--------KTIVNS 617

Query: 1125 NDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
               +     E   G  + G I K+LS   G ++Q    + G +  +E+    +       
Sbjct: 618  EAPVVKSYDEVTVGMQIPGTIIKVLS--SGAIIQFFGTVQGFLPISEMSEAYIK------ 669

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS-SLDGMSSTNSSDLSTDVDT 1240
                 DP   +  GQ V   VL++    +    + +S +  S  G+   N+         
Sbjct: 670  -----DPKEHFRIGQVVSIHVLDVQPEDK---RLVVSCKDPSAFGLEKQNA--------- 712

Query: 1241 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGYVESPEKEFP 1299
                   ++ L  + +V   V   T    F+ L+  +L A + + +L+D    + + ++ 
Sbjct: 713  -------LKKLQLSDVVSAKVTQKTEDQVFVELADSQLKATISVGHLTDK--SNSKNQYA 763

Query: 1300 IGKLVAGRVLS----VEPLSKRVEVTLKTSDS---RTASQSEINNLSNLHVGDIVIGQIK 1352
              ++  G+ LS    +E    R  + L    S    + +++ + +      G IV G ++
Sbjct: 764  FKRIAVGQTLSDLVIIEKDDNRRVIVLSHKPSLLDASKNRTLLTSFEKAKEGKIVAGFVR 823

Query: 1353 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
             +    +F+     NL  L   + L  D  D  +      + ++VKI+ V  + +RI
Sbjct: 824  NITVTAVFVQFAG-NLTALLPKARLPADVQDQPDFGMHKHQSIEVKIVSVIPDHQRI 879


>gi|239789556|dbj|BAH71394.1| ACYPI007311 [Acyrthosiphon pisum]
          Length = 353

 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/281 (39%), Positives = 168/281 (59%), Gaps = 4/281 (1%)

Query: 1531 IRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            +R  EE L + +  P+  D F+RLV S+PNSSF+WIKYMA  L   +VEKAR+ A+RAL 
Sbjct: 71   LRKVEEELTQIETNPQNADHFDRLVLSNPNSSFIWIKYMACHLQATEVEKARATAKRALS 130

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
             I+ REE EKLNIW A  NLEN YG   +E+  +    AL+  D  ++++ +L ++  + 
Sbjct: 131  IIDTREEQEKLNIWTALLNLENLYGT--KESFKQTMDEALRSNDEYQIYIKILDIFAESN 188

Query: 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFIS 1708
            + K  +EL+ K+ +KF+ S   +L       K  + G  + ++Q+AL +LP   H+  IS
Sbjct: 189  KLKELEELITKINRKFRDSLDAYLHCATVYFKLNKPGKARFILQKALSNLPTKSHVTMIS 248

Query: 1709 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1768
            + A++E  +G  +  +++FE +L+ YP R D+WS+Y+D  I+   +DL R   ERA    
Sbjct: 249  RFALVENSDGSPEEAQTLFEHVLTSYPSRIDVWSLYVDMLIKFNRIDLARHALERATIQK 308

Query: 1769 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
            L PKKMK LF K++  E   G  E ++ VK+    YV+  L
Sbjct: 309  LAPKKMKSLFNKWMMLEGKYGTSESVDKVKECMNNYVDLIL 349


>gi|124088569|ref|XP_001347148.1| Pre-rRNA processing protein RRP5 [Paramecium tetraurelia strain d4-2]
 gi|145474227|ref|XP_001423136.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057537|emb|CAH03521.1| Pre-rRNA processing protein RRP5, putative [Paramecium tetraurelia]
 gi|124390196|emb|CAK55738.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1444

 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 164/265 (61%), Gaps = 10/265 (3%)

Query: 1549 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1608
            E+E+ + ++PNS+ +WI+++A+      +E AR++ ERAL+ IN   E E+LN+W AY N
Sbjct: 1165 EYEKKILTNPNSAVIWIEFVAYAAENEGIESARNVIERALRVINFSNELERLNLWTAYLN 1224

Query: 1609 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1668
            LE  +G+  E+ ++ +F+R  Q CD KK+H+ L+ +Y + E+  L  EL    ++K+K S
Sbjct: 1225 LEFNFGS--EDNLINIFKRGCQNCDGKKLHVKLINIYRKAEKVDLTVELSRSFVQKYKQS 1282

Query: 1669 CKVWLRRVQRLLKQQQ--------EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1720
            CK W+  +Q L++ Q+           +  + RA+  L + K +K +S    L+F+N   
Sbjct: 1283 CKSWMEFLQSLMEWQKVHDDENPLYSFKDTLNRAVQCLKKSKQVKLLSFYGRLQFQNNQI 1342

Query: 1721 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1780
            + G++ +E IL +   RTDLWS YLD  I+    D++R +F++AI  +  P+K+KFLFKK
Sbjct: 1343 EEGKTTYETILDKNSSRTDLWSQYLDLVIKHCQPDVVRSIFQKAIHNNKKPRKIKFLFKK 1402

Query: 1781 YLEYEKSVGEEERIEYVKQKAMEYV 1805
             LEYE   G+   I+ VK++A ++V
Sbjct: 1403 QLEYENQYGDSATIQKVKEQAEQWV 1427



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 29/227 (12%)

Query: 369 SDVKPGMVVKGKVIAV----DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
           SD+  G +VKG V  V    DS+  +++      A+ P   MS++ +  P  KF+VG++L
Sbjct: 426 SDLSVGAIVKGVVKQVLLKEDSYSVLLKINDNFNAILPSIQMSDYPLTNP-PKFRVGSKL 484

Query: 425 VFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 482
             R+L +  +   I VT K TL+ + + +  S  +       +G+  K  ++G  V+F+ 
Sbjct: 485 RVRILQIDEQHNNIIVTMKPTLL-TDIKVFKSLDDINAGDTLYGYTIKKLENGILVKFFQ 543

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSED 539
            + GF   S L LD G  P  +   GQ++K  +     +  ++ LS      K  +V+E 
Sbjct: 544 NIVGFL--SNLSLD-GQNPDDIKD-GQIIKVYVKYINQSENKLLLSLKKIDPKQKQVTEG 599

Query: 540 DL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 574
                         + LG  V  VV  +  N  VVYV  K    G I
Sbjct: 600 QTSNVPLTKQVKIKLNLGEKVQCVVSAIKNN--VVYVNLKDGKFGRI 644



 Score = 42.4 bits (98), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
           ++L +D + +N++++ K +L+   +   S    I+    ++GY    +E G  V+F   +
Sbjct: 487 RILQIDEQHNNIIVTMKPTLLTDIKVFKS-LDDINAGDTLYGYTIKKLENGILVKFFQNI 545

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            GF   + ++DGQ  D  K    GQ ++  +  +N    ++ LSLK+
Sbjct: 546 VGFLS-NLSLDGQNPDDIKD---GQIIKVYVKYINQSENKLLLSLKK 588


>gi|219126210|ref|XP_002183355.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405111|gb|EEC45055.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 300

 Score =  201 bits (512), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/282 (40%), Positives = 177/282 (62%), Gaps = 17/282 (6%)

Query: 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
            D P T  +FERL+ SSPNSS +WI+YMAF L++AD+  AR +AERA Q I  R+E EKLN
Sbjct: 20   DNPETASDFERLLASSPNSSELWIRYMAFHLTLADIPAAREVAERAFQRIEFRQEGEKLN 79

Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER--TEQNKL-----A 1654
            +W A   LE +YG+     +    +RA Q+ +PKK+HL +  + E+  TE++ +      
Sbjct: 80   VWCALLTLELKYGSST--CLKATIERACQHNNPKKIHLRVCEMMEKEATEKSSVGTTERT 137

Query: 1655 DELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1713
            D++  KM KKFK    VWL   + LL+  + E   A+ +RALLSLP +KH++ +S+ A L
Sbjct: 138  DDMFSKMCKKFKSKKTVWLAHAKYLLRLGRHEEAYALSKRALLSLPAYKHVELMSKFAQL 197

Query: 1714 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER-------AIS 1766
             F+   A++ R++F+G+L + PKR D+  +Y+D+E++ G+ +  R LFE+       ++ 
Sbjct: 198  VFEYNSAEKARTLFDGLLQKNPKRLDILFVYVDKEVKYGEAETARSLFEKVAGKEIDSLQ 257

Query: 1767 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1808
            + L  K+MK LFKK+  +E+  G  +  E VK+ A  YVES+
Sbjct: 258  MKLSDKQMKSLFKKWFSFEEQHGTAKTQERVKEAARAYVESS 299


>gi|328697835|ref|XP_003240456.1| PREDICTED: protein RRP5 homolog [Acyrthosiphon pisum]
          Length = 353

 Score =  201 bits (511), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/278 (39%), Positives = 167/278 (60%), Gaps = 4/278 (1%)

Query: 1531 IRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            +R  EE L + +  P+  D F+RLV S+PNSSF+WIKYMA  L   +VEKAR+ A+RAL 
Sbjct: 71   LRKVEEELTQIETNPQNADHFDRLVLSNPNSSFIWIKYMACHLQATEVEKARATAKRALS 130

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
             I+ REE EKLNIW A  NLEN YG   +E+  +    AL+  D  ++++ +L ++  + 
Sbjct: 131  IIDTREEQEKLNIWTALLNLENLYGT--KESFKQTMDEALRSNDEYQIYIKILDIFAESN 188

Query: 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFIS 1708
            + K  +EL+ K+ +KF+ S   +L       K  + G  + ++Q+AL +LP   H+  IS
Sbjct: 189  KLKELEELITKINRKFRDSLDAYLHCATVYFKLNKPGKARFILQKALSNLPTKSHVTMIS 248

Query: 1709 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1768
            + A++E  +G  +  +++FE +L+ YP R D+WS+Y+D  I+   +DL R   ERA    
Sbjct: 249  RFALVENSDGSPEEAQTLFEHVLTSYPSRIDVWSLYVDMLIKSNRIDLARHALERATIQK 308

Query: 1769 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            L PKKMK LF K++  E   G  E ++ VK+    YV+
Sbjct: 309  LAPKKMKSLFNKWMMLEGKYGTSESVDKVKECMNNYVD 346


>gi|195451940|ref|XP_002073142.1| GK13970 [Drosophila willistoni]
 gi|194169227|gb|EDW84128.1| GK13970 [Drosophila willistoni]
          Length = 1379

 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/311 (36%), Positives = 182/311 (58%), Gaps = 11/311 (3%)

Query: 1505 TDEAKTIDEKNNRH------AKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSS 1557
            +DEA+  +E++ +       AK K + + EQ +R  EER  + DA P T D++ERLV + 
Sbjct: 1062 SDEAEETEEQDPKKRRLSSKAKAKAQVKEEQRLREIEERNADPDAKPETIDQYERLVLAQ 1121

Query: 1558 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1617
            PN+S  W++Y+AF+LS  ++EKAR +A RA+ TI+ RE  E  NIW A  N+E  Y +  
Sbjct: 1122 PNNSLTWLQYIAFLLSNTEIEKARVLARRAISTISFRESQELRNIWSALLNIELTYNSQN 1181

Query: 1618 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW-LRRV 1676
             + V+K    AL   DP +++L+L+ +  +  Q +    +L  ++ KFK   K+W L   
Sbjct: 1182 FDDVLK---EALNSNDPLEIYLSLVDILRKNNQKERLSGVLVTILNKFKSELKIWSLAAD 1238

Query: 1677 QRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1736
                  + + V A++QRAL +LP   HI  I   A L  K+   D  +++ + +++ YPK
Sbjct: 1239 AYFWLGRSDQVHALLQRALRTLPNSDHINCIVAFAKLFAKHDAHDMAQTLLDDVVTSYPK 1298

Query: 1737 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1796
            RTD+W +Y+D  I+   +D  R + ERA+   L P KM+ ++KKYL+ E++ G E  +  
Sbjct: 1299 RTDIWLVYVDMLIKAQLIDAARNVLERAVVQKLRPNKMQVIYKKYLQLEENFGTEAHVAN 1358

Query: 1797 VKQKAMEYVES 1807
            VKQ+A ++V +
Sbjct: 1359 VKQQAEQWVRN 1369



 Score =  122 bits (305), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 239/507 (47%), Gaps = 40/507 (7%)

Query: 10  MKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEI--EANEDNLLPTIFHV 64
           M + GVV E +   + + LPG L   A  AD   A   +    +  + +E + L  +FHV
Sbjct: 78  MLVMGVVRETSATSVQVALPGRLTARALVADISEAYAHVAKAAMAGDTSEYHDLTELFHV 137

Query: 65  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
           GQ+V    ++   D+ E  +  + LSLR + ++  L   ++++G + +  +  I++HG+I
Sbjct: 138 GQIVYGRAIK--TDQLEAKRITVILSLRPADVHSQLQHTSIKKGFIFSGAIAEIQEHGFI 195

Query: 125 LHFGLPSFTGFLPRNNLAENS-GIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 183
           +  G+     F+P +   EN   +     L ++ +    +++     + SD +   K   
Sbjct: 196 IETGIQGLQAFVPHDESNENQFHVGQLAFLKVKQITHDKNQSTCTCQIISDQN---KLKI 252

Query: 184 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKNDY 242
           K     ++D L+PG +V  +V   L++G+  S L   F   ++  HL +   T     DY
Sbjct: 253 KSQNETNLDYLLPGSIVRFKVSKQLKDGLKGSILNENFVAYINEHHLAHPLHTL---QDY 309

Query: 243 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----------SHVKVGDIYDQSKV 291
           + +++ NAR+L+  P ++ V LTLN   +  +A P           + +K G I +++KV
Sbjct: 310 DLNEEYNARVLYTMPLTKLVYLTLN---VEIKAGPEQEVEDEAEDQTELKKGSIVEKAKV 366

Query: 292 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLE 349
           +R+  G G++L +        +Y  I    +    K E   KY   +  +VR+LG+  +E
Sbjct: 367 LRLASG-GVILLLNKQSKGLISYSCIKSHYKGNYDKDEVLSKYGRKTKHKVRVLGYDLIE 425

Query: 350 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK-ALCPLPHMSE 408
            L       +     ++T  D+ PG +V  +++  D     ++  GG    L  +  + +
Sbjct: 426 SLYYCSDDPNVVNEKLYTLEDLNPGDLVSARLVKQD-----IKINGGWSLKLGKINGIID 480

Query: 409 FEIVKPGKKFKVGAELVFRVLGVKSKRIT--VTHKKTLVKSKLAILSSYAEATDRLITHG 466
              + PG++++VG  +  R+L V  +R T  +T++   +     +L++   A +  +  G
Sbjct: 481 ALYLAPGQRYEVGQRVRCRILDVNLERRTCYLTNRPEYLSKSAKLLTNLQSAQEGQVFTG 540

Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSEL 493
            + K E +   ++F NG++G   + +L
Sbjct: 541 TVVKNELNFFLIKFCNGLKGVLYKQQL 567


>gi|195151847|ref|XP_002016850.1| GL21990 [Drosophila persimilis]
 gi|194111907|gb|EDW33950.1| GL21990 [Drosophila persimilis]
          Length = 1433

 Score =  199 bits (505), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 189/329 (57%), Gaps = 19/329 (5%)

Query: 1489 DEQPDMDNGISQNQGHTDEAKTIDEKNNR-HAKKKEKEE--REQEIRAAEERLLEKDAP- 1544
            ++  D  +   +++  T E +T   K  R  AK+K K E   EQ +R  EER  +  A  
Sbjct: 1109 NQTKDASSDEEEDEPTTAETQTNSNKKKRLSAKEKAKAEVKEEQRLREIEERNADPQARL 1168

Query: 1545 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1604
             T D++ERLV + PN+S  W+KY++F+LS  ++EKAR +A RA+ TI+ RE  E  NIW 
Sbjct: 1169 ETIDQYERLVIAQPNNSMSWLKYISFLLSNTEIEKARDLARRAIATISFREPQELRNIWS 1228

Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1664
            A  ++E  YGN  +E    V + ALQ  DP + +++++ + ++  Q +    +L  ++KK
Sbjct: 1229 ALLSMELAYGNNFDE----VLKEALQSNDPLETYISVVDILKKNNQRERLSSVLVILLKK 1284

Query: 1665 FKHSCKVWLRRVQRLLKQ------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1718
            FK   KVW     RL+ +      + + V +++QRAL SLP  +HI  I   A L   N 
Sbjct: 1285 FKSEPKVW-----RLVAEAYFWLGKSDQVHSLLQRALHSLPNPEHINLIVAFAKLYENND 1339

Query: 1719 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1778
              D  +++ + I++ YPKR D+WS+Y+D  I+ G +D  R + +RA+   L P+KM+ ++
Sbjct: 1340 DKDMAQTLLDDIVTSYPKRIDIWSVYVDMLIKTGQIDSARNVLDRAVQQKLKPEKMRVIY 1399

Query: 1779 KKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            KKYL  EK  G +     V Q+A E+V++
Sbjct: 1400 KKYLTLEKKHGSKATEAKVMQEAEEWVKN 1428



 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 186/856 (21%), Positives = 365/856 (42%), Gaps = 83/856 (9%)

Query: 10  MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEI--EANEDNLLPTIFHV 64
           M + GVV E +   L I +PG +     +   ++A   +  + +  E ++ + L  +F V
Sbjct: 75  MLVMGVVKESSAISLQIAIPGRMTARTQVGEISEAYTRVAQSAMAGETSDYHDLTELFPV 134

Query: 65  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
           G +V    ++ D  K    +  + LSL+ + +++ L  + +++G V +  +    +HGY+
Sbjct: 135 GTIVYGKAIKTD--KPGSNRTSVLLSLKPADVHERLHHKNIKKGFVFSGAISEALEHGYV 192

Query: 125 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 184
           +  G+   T F+      E +   +  G L      +  + ++V + +S        V +
Sbjct: 193 IETGIQGLTAFVA----CEAAEQTLHVGQL------AFLKVKQVKHDASTSSCTCVHVQQ 242

Query: 185 DLKGI------SIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTN 237
           D   I      ++D ++PG +V  +V   L++G+  S +   FT  V+  H+ N   T  
Sbjct: 243 DALKIKSQNESNLDYILPGSIVRFKVSKHLKDGLKGSIMNESFTAYVNEHHMANALETP- 301

Query: 238 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP-----PSHVKVGDIYDQSKVV 292
              DY  +++ + R+L+V P ++ V LTLN  +              +K G I +++KV+
Sbjct: 302 --EDYELNEEYHTRVLYVMPLTKLVYLTLNLDIKQTAEDVEDQVEEPLKPGSIVEKAKVL 359

Query: 293 RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEG 350
           R+  G G++L +     +  +Y +I    +    K E   KY   +  +VR+LG+  +E 
Sbjct: 360 RLGSG-GVVLLLNKKLKAILSYGSIKANFKGNYDKDEVLSKYGRKTKHKVRVLGYDMIES 418

Query: 351 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
           L       +     +++  D+ PG +V  K+I  D      +  G    +  L  + +  
Sbjct: 419 LYYCSDDPNLVNEKLYSLEDLNPGDIVTAKMIKKDE-----KINGWTVKIGRLNGIIDQL 473

Query: 411 IVKPGKKFKVGAELVFRVLGVKSKRIT--VTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
            +    +++ G  +  RVL +   R T  ++++   ++    +L+S + A +  +  G +
Sbjct: 474 YLANNLRYEAGQRVRCRVLDISLDRKTCYLSNRSEYLRKDAKLLTSLSAAHEGGVYLGTV 533

Query: 469 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINL 527
            + E     V+F +G++G   R  L      E SS+ +  GQ    RI+S      +I L
Sbjct: 534 VRCEPGYILVKFGDGIKGVLHRQNLS-----EKSSLSFFEGQTTTFRILSR--NKDQITL 586

Query: 528 SFMMKPTRVSEDDLVKL-GSLVSGV-VDVVTPNAVVVYVIAKGYSK-------GTIPTEH 578
           +      ++ E   V++  +L +G+ + +  P             +       G IP+  
Sbjct: 587 TLPEDKFQLGEICPVEITNALDAGLEMKITYPADEDEDADQDDEQEPKIEEFLGLIPSSL 646

Query: 579 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 638
           L+DH+E     K +   G   +   +  N  S  L    Y     + QL +D   +    
Sbjct: 647 LSDHVELIAAQKRIHPVGSHTEAACIGQNIFS--LRDVPY----FSGQLTTDWKTVQVGD 700

Query: 639 VVHGYVCN-----IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +V  YV N     +++    +R   ++     +   ++  RA L       Q +   +L 
Sbjct: 701 IVRAYVKNVSTDQVVDLMVAIRDYNKVVKVHVKMLRLNAVRA-LPVDLTPDQLLYVKVLS 759

Query: 694 VNSETGRITLSLKQSCCSSTD----ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFI 748
            + ET  +T+S K +   S D    A  ++ +F  +E + +    K   + + K+  G  
Sbjct: 760 KSVETKTLTVSAKLTDVWSGDLGETAKLVESYF--DELMQIRSVLKEKSAPIAKFDLGKT 817

Query: 749 IGSVIEGKVHESNDFGVVVSFEEHSDVYG-FITHHQLAGATV--ESGSVIQAAILDVAKA 805
           I  + +G    SND+  + + E    V    ++    AG+ V  + GS   A IL +  A
Sbjct: 818 ISVIFKGIDPVSNDW--LYTVEGSPKVKALLVSSLAPAGSAVTPQVGSKQPAVILWIDYA 875

Query: 806 ERLVDLSLKTVFIDRF 821
           E L+ +S K V I+  
Sbjct: 876 EDLLLVSTKKVDIEHI 891


>gi|291227737|ref|XP_002733839.1| PREDICTED: CG5728-like [Saccoglossus kowalevskii]
          Length = 822

 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 170/580 (29%), Positives = 277/580 (47%), Gaps = 76/580 (13%)

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
            L V I P + G V+F  L   C            + P   +  GQ  K  V++I +    
Sbjct: 84   LRVDITPRMRGVVYFLHLSKNC---------HDLYSPEKHFKPGQAHKALVMKIDKQ--- 131

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
              H +L L  SLDG  S                     DL    +  G++ +       +
Sbjct: 132  --HKKLDL--SLDGTVSN--------------------DLKEGAVQNGWITHKYPTELGV 167

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS----DS 1327
             L+      V +++++D Y + P K F I + V   +L  +   K V ++L+ S    + 
Sbjct: 168  QLAGGNHGNVFITDINDKYSDDPIKMFRINQFVRCCILDCKD-EKHVTLSLRQSRINHNI 226

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
             +    EI NL +L VGDIV G +K     G+F+++ +  L G   +  LS  +V+    
Sbjct: 227  VSVPDKEIRNLCDLSVGDIVKGYVKDYSEVGVFVSL-SKELKGRIQLKNLSSYYVNKSAE 285

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSS 1447
             +  G+ V  K+L +D +  +I L +   +       L    E+    +++ VG   R  
Sbjct: 286  AFYCGKLVTAKVLSIDVDNSKIELSIHPEH-----TGLPDQLEKRYRGSLKCVGDSERRK 340

Query: 1448 LLENSSVAVQDM-DMESEDGG--------------SLVLAQIESRASVPPLEV---NLDD 1489
             +E      +   D E  D G               ++ +++ + + V  LE+   + DD
Sbjct: 341  YVEQRKKQKRKRQDSEESDSGIDGVLKDADSDSEVEIITSKMSNTSKVARLELAGFSWDD 400

Query: 1490 EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE-------IRAAEERLLEKD 1542
            +    +   S  +   D     D+ N    KKK K+ER+QE       +   E  L+++D
Sbjct: 401  KTFTANLTQSAKEMSGDSDSEDDDTNEEPLKKKTKKERQQEEKEEEKFLYRTELSLMDQD 460

Query: 1543 -APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
             AP   D+F+RLV SSP+SS +WI+YMAF L   D++KAR++AERAL+TI+ REE EKLN
Sbjct: 461  RAPENVDDFDRLVLSSPDSSMIWIRYMAFYLHTTDIDKARAVAERALKTISFREEQEKLN 520

Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1661
            +WVAY NLEN YG    E +VK+F+RALQ CDP KV  +++ +Y +T++ + A++L   M
Sbjct: 521  VWVAYLNLENLYGT--NETLVKLFERALQMCDPLKVFRSMINIYTKTQKLEEAEQLYSTM 578

Query: 1662 IKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPR 1700
            +++F     VW      L+K  + +  + ++QR+  SL +
Sbjct: 579  VRRFNFHKDVWASYGMFLMKSGKLDAARKIMQRSFKSLDK 618



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 1698 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1757
            +P   +++ I + A  EFK G  +RGR+MFE +LS YPKRTD+WSIY+D  I+ G +D I
Sbjct: 700  VPMGDYVEIIVKFAQFEFKFGEPERGRTMFENVLSNYPKRTDIWSIYIDMVIKQGHIDAI 759



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 104/238 (43%), Gaps = 31/238 (13%)

Query: 886  PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 945
            P+K F  GQ+  A VM +        L L        + + S   K+      G++    
Sbjct: 111  PEKHFKPGQAHKALVMKIDKQHKKLDLSL--------DGTVSNDLKE------GAVQNGW 156

Query: 946  ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1005
            IT   P EL ++   G HG + IT++ND  S   ++    F+I Q V   I+      D 
Sbjct: 157  ITHKYPTELGVQLAGGNHGNVFITDINDKYS---DDPIKMFRINQFVRCCIL------DC 207

Query: 1006 KKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1063
            K      LS++ S +   +  +  K +   CD+S+G  V GYV         +++S+ LK
Sbjct: 208  KDEKHVTLSLRQSRINHNIVSVPDKEIRNLCDLSVGDIVKGYVKDYSEVGVFVSLSKELK 267

Query: 1064 A--QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
               QL  L S Y    + +    F+ GK VT  VLSI+ +   + L + P   G+ D+
Sbjct: 268  GRIQLKNLSSYY----VNKSAEAFYCGKLVTAKVLSIDVDNSKIELSIHPEHTGLPDQ 321


>gi|125776020|ref|XP_001359140.1| GA19088 [Drosophila pseudoobscura pseudoobscura]
 gi|54638882|gb|EAL28284.1| GA19088 [Drosophila pseudoobscura pseudoobscura]
          Length = 1433

 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 189/329 (57%), Gaps = 19/329 (5%)

Query: 1489 DEQPDMDNGISQNQGHTDEAKTIDEKNNR-HAKKKEKEE--REQEIRAAEERLLEKDAP- 1544
            ++  D  +   +++  T E +T   K  R  AK+K K E   EQ +R  EER  +  A  
Sbjct: 1109 NQTKDASSDEEEDEPTTAETQTNSNKKKRLSAKEKAKAEVKEEQRLREIEERNADPQARL 1168

Query: 1545 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1604
             T D++ERLV + PN+S  W+KY++F+LS  ++EKAR +A RA+ TI+ RE  E  NIW 
Sbjct: 1169 ETIDQYERLVIAQPNNSMSWLKYISFLLSNTEIEKARDLARRAIATISFREPQELRNIWS 1228

Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1664
            A  ++E  YGN  +E    V + ALQ  DP + +++++ + ++  Q +    +L  ++KK
Sbjct: 1229 ALLSMELVYGNNFDE----VLKEALQSNDPLETYISVVDILKKNNQRERLSSVLVILLKK 1284

Query: 1665 FKHSCKVWLRRVQRLLKQ------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1718
            FK   KVW     RL+ +      + + V +++QRAL SLP  +HI  I   A L   N 
Sbjct: 1285 FKSEPKVW-----RLVAEAYFWLGKSDQVHSLLQRALRSLPNPEHINLIVAFAKLYENND 1339

Query: 1719 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1778
              D  +++ + I++ YPKR D+WS+Y+D  I+ G +D  R + +RA+   L P+KM+ ++
Sbjct: 1340 DKDMAQTLLDDIVTSYPKRIDIWSVYVDMLIKTGQIDSARNVLDRAVQQKLKPEKMRVIY 1399

Query: 1779 KKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            KKYL  EK  G +     V Q+A E+V++
Sbjct: 1400 KKYLTLEKKHGSKATEAKVMQEAEEWVKN 1428



 Score = 97.1 bits (240), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 188/855 (21%), Positives = 367/855 (42%), Gaps = 85/855 (9%)

Query: 10  MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEI--EANEDNLLPTIFHV 64
           M + GVV E +   L I +PG +     +   ++A   +  + +  E ++ + L  +F V
Sbjct: 75  MLVMGVVKESSAISLQIAIPGRMTARTQVGEISEAYTRVAQSAMAGETSDYHDLTELFPV 134

Query: 65  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
           G +V    ++ D  K    +  + LSL+ + +++ L  + +++G V +  +    +HGY+
Sbjct: 135 GTIVYGKAIKTD--KPGSNRTSVLLSLKPADVHERLHHKNIKKGFVFSGAISEALEHGYV 192

Query: 125 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 184
           +  G+   T F+      E +   +  G L      +  + ++V + +S        V +
Sbjct: 193 IETGIQGLTAFVA----CEAAEQTLHVGQL------AFLKVKQVKHDASTSSCTCVHVQQ 242

Query: 185 DLKGI------SIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTN 237
           D   I      ++D ++PG +V  +V  +L++G+  S +   FT  V+  HL N   T  
Sbjct: 243 DALKIKSQNESNLDYILPGSIVRFKVSKLLKDGLKGSIMNESFTAYVNEHHLANALETP- 301

Query: 238 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH------VKVGDIYDQSKV 291
              DY  +++ +AR+L+V P ++ V LTLN   +  RA          +K G I +++KV
Sbjct: 302 --EDYELNEEYHARVLYVMPLTKLVYLTLN-LDIKQRAEDVEEQEEEPLKPGSIVEKAKV 358

Query: 292 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLE 349
           +R+  G G++L +     +  +Y +I    +    K E   KY   +  +VR+LG+  +E
Sbjct: 359 LRLGSG-GVVLLLNKKLKAILSYGSIKANFKGNYDKDEVLSKYGRKTKHKVRVLGYDMIE 417

Query: 350 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
            L       +     +++  D+ PG +V  K+I  D      +  G    +  L  + + 
Sbjct: 418 SLYYCSDDPNLVNEKLYSLEDLNPGDIVTAKMIKKDE-----KINGWTVKIGRLNGIIDQ 472

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRIT--VTHKKTLVKSKLAILSSYAEATDRLITHGW 467
             +    +++ G  +  RVL +   R T  ++++   ++    +L+S + A +  +  G 
Sbjct: 473 LYLANNLRYEAGQRVRCRVLDISLDRKTCYLSNRSEYLRKDAKLLTSLSAAHEGGVYLGT 532

Query: 468 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRIN 526
           + + E     V+F +G++G   R  L      E SS+ +  GQ    RI+S      +I 
Sbjct: 533 VVRCEPGYILVKFGDGIKGVLHRQNLS-----EKSSLSFFEGQTTTFRILSR--NKDQIT 585

Query: 527 LSFMMKPTRVSEDDLVKL-GSLVSGV-VDVVTPNAVVVYVIAKGYSK-------GTIPTE 577
           L+      ++ E   V++  +L +G+ + +  P             +       G IP+ 
Sbjct: 586 LTLPEDKFQLGEICPVEITNALDAGLEMKITYPADEDEDADQDDEQEPKIEEFLGLIPSS 645

Query: 578 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN 637
            L+DH+E     K +   G   +   +  N  S  L    Y     + QL +D   +   
Sbjct: 646 LLSDHVELIAAQKRIHPVGSHTEAACIGQNIFS--LRDVPY----FSGQLTTDWKTVQVG 699

Query: 638 SVVHGYVCN-----IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
            +V  YV N     +++    +R   ++     +   ++  RA L       Q +   +L
Sbjct: 700 DIVRAYVKNVSTDQVVDLMVAIRDYNKVVKVHVKMLRLNAVRA-LPVDLTPDQLLYVKVL 758

Query: 693 DVNSETGRITLSLKQSCCSSTD----ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGF 747
             + ET  +T+S K +   S D    A  ++ +F  +E + +    K   + + K+  G 
Sbjct: 759 SKSVETKTLTVSAKLTDVWSGDLGETAKLVESYF--DELMQIRSVLKEKSAPIAKFDLGK 816

Query: 748 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL---AGATVESGSVIQAAILDVAK 804
            I  + +G    SND+  + + E    V   +        + AT + GS   A IL +  
Sbjct: 817 TISVIFKGIDPVSNDW--LYTVEGSPKVKALLVSSLAPAGSAATPQVGSKQPAVILWIDY 874

Query: 805 AERLVDLSLKTVFID 819
           A+ L+ +S K V I+
Sbjct: 875 ADDLLLVSTKKVDIE 889


>gi|307211267|gb|EFN87453.1| Protein RRP5-like protein [Harpegnathos saltator]
          Length = 1385

 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 200/345 (57%), Gaps = 22/345 (6%)

Query: 1477 RASVPPLEVNLDDEQPDMDNGISQNQGHTDEA-KTIDEKNNRHAKKKEKEEREQE----- 1530
            +  +P +  N D E PD +  ++ ++  +DE  ++  E   +  K    E REQE     
Sbjct: 1042 KPHLPEVPFNWDHE-PDSNRAVAVSETSSDEEEQSTGEPEQKKKKLSSAERREQERQKEH 1100

Query: 1531 -IRAAEE--RLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1587
             IR  E+  RL    AP + DEFE+LV SSPNS+ VW KYMA+ L  A ++K+R++A RA
Sbjct: 1101 EIRQQEKNNRLAGNHAPNSIDEFEKLVLSSPNSALVWTKYMAYNLQ-ATIDKSRAVARRA 1159

Query: 1588 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY-- 1645
            +QTIN +EE + L +W A+ N+E ++G    E++  VFQ A++  D  KV+  +L ++  
Sbjct: 1160 IQTINFQEEQQLLKVWKAWLNMEAKFGT--RESLNDVFQEAVRRADDLKVYTHMLNVFLD 1217

Query: 1646 --ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHK 1702
              ERTE  KL D     M  KFK   ++W+     LLK   ++    ++QRAL SL   +
Sbjct: 1218 MGERTELEKLID----VMTHKFKEKPEMWVDCGAALLKIGLKDKSWHIMQRALKSLRTFQ 1273

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
            H+  + Q A+LE K G  +R   +FE IL  YPKR D+W  Y+D  ++  D+DL R + +
Sbjct: 1274 HVNLVVQFALLENKLGDKERAHMLFEEILKTYPKRIDVWFTYVDCLVKTEDIDLARKVLK 1333

Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             A+ + LP KKMK LFKKY+ +E++ G  E +  ++Q  + +VE+
Sbjct: 1334 EALCMKLPLKKMKMLFKKYVRFEEAYGTAEDLNRLEQMVINFVEN 1378



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 155/609 (25%), Positives = 286/609 (46%), Gaps = 43/609 (7%)

Query: 6   ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--------NEIEANEDNL 57
           I  GM +   ++E+ E +L+I +PGGL G  +  D  +P  D         +++++E   
Sbjct: 10  ICEGMIILCRISEITEYELIISIPGGLLGCVKLTDLSEPYTDLLQDIIHTKDVQSDEFKS 69

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
           L  ++++G  V C V ++D D    GK    LSL   L+ + ++   +  G  +   VKS
Sbjct: 70  LSELYNLGDYVVCYVKKIDSD----GKWLYNLSLEPQLINQNVNNTNLVTGTKIVCTVKS 125

Query: 118 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKV--VYLSSDP 175
           IEDHGY++  G+ +   FL    ++E       PG  +  V++ I    +V  + LS+  
Sbjct: 126 IEDHGYVIDTGIANVRAFLASKYVSEEK--KYFPGNQIMCVIKEIKTVDQVSILTLSAKR 183

Query: 176 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
            TV+K  T D++  S+D L+PG  +S R+   L NG+ ++F     G ++  +L +  P 
Sbjct: 184 KTVNKVSTHDIE--SLDALMPGTKLSLRITRTLSNGLQVTFGKNNVGYLNRIYLDS--PL 239

Query: 236 TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 295
           + + ND     +V   +L++ PT +    +L      + +    + +G +  ++KV+  +
Sbjct: 240 STYVND----TEVTGTLLYIMPTVKFAYFSLPT----DASDEDSLPIGGVIRKAKVLYRE 291

Query: 296 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 355
              G++  +  + +     +  +DV    + K+   ++ GS  + +++ +  +E L    
Sbjct: 292 SN-GIIFKLTKSNLRGFVSLHRTDVP---ITKISTVFQPGSVHKCKMISYNWMEHLYVCS 347

Query: 356 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKP 414
           ++    E   ++ +D++ G  V  K+  VD+    VQ   G +       H+S+  +   
Sbjct: 348 MEREILEQKYYSLTDLQTGDTVTVKLTKVDTKSGFVQVQVGKICGFVGPEHVSDSGLSGL 407

Query: 415 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
            K  K G  +  RVL V +  + +  T K++L+KSKL +L    EA      HG I KI 
Sbjct: 408 NK-LKDGDSVEARVLNVNTDKRNVRFTLKQSLIKSKLPVLQDICEARCGQEYHGTIIKIN 466

Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH-VGQVVKCRIMSSIPASRRINLSFMM 531
           K+G  VRFY  V+G+ PRS   LD      +  H +GQ V   I S      ++ L  + 
Sbjct: 467 KYGLLVRFYGDVKGWVPRSV--LDSNTSDMNWNHTIGQTVTVLIDSIEKEEGKMKLRIIT 524

Query: 532 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI----AKGYSKGTIPTEHLADHLEHAT 587
              +  +   +K+G L+ G V   +   + + +     ++G   G +P  H++  LE   
Sbjct: 525 GEQKQQQSHNMKVGELIEGTVVESSLEGIHLRICKTNDSEGVVSGFLPAGHMSPCLEIGA 584

Query: 588 VMKSVIKPG 596
           ++ S   PG
Sbjct: 585 LLASKCTPG 593



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 107/498 (21%), Positives = 190/498 (38%), Gaps = 91/498 (18%)

Query: 601  QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
            ++L ++ +  N+  + K SLI S   +  D          HG +  I + G  VRF G +
Sbjct: 419  RVLNVNTDKRNVRFTLKQSLIKSKLPVLQDICEARCGQEYHGTIIKINKYGLLVRFYGDV 478

Query: 661  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
             G+ PRS  +D   +D++  + +GQ+V   I  +  E G++ L +               
Sbjct: 479  KGWVPRS-VLDSNTSDMNWNHTIGQTVTVLIDSIEKEEGKMKLRI--------------- 522

Query: 721  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG---KVHESNDF-GVVVSFEEHSDVY 776
                E+K    Q   HN    + +EG ++ S +EG   ++ ++ND  GVV  F     + 
Sbjct: 523  -ITGEQK----QQQSHNMKVGELIEGTVVESSLEGIHLRICKTNDSEGVVSGFLPAGHMS 577

Query: 777  GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRK 836
              +    L  +    G  I A +  +  +          V + R        ++  K   
Sbjct: 578  PCLEIGALLASKCTPGDTISAYVFSMQPS----------VIMSRTYMTQGEYRSFDK--- 624

Query: 837  REASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS----IGYASVSDYNTQKFPQKQFLN 892
                  L V   +   +  + ++ + + LP  ++S    + Y ++S++      Q  F+ 
Sbjct: 625  ------LKVGDCIPCTIRDITKDGVKVILPIEDYSTFGYVSYKNISNFKRLYIDQILFVK 678

Query: 893  GQSV------IATVMALPS------------SSTAGRLLLLLKAISETETSSSKRAKKKS 934
              ++      +   M+L               S    L L L  +SE  T+   + K  S
Sbjct: 679  ITAINKREKQLTLSMSLKELWDSPVEHGAKMLSAVDVLSLYLNKLSELATNVFYKNKPIS 738

Query: 935  SYDVGSLVQAEITEIKP--LELRLKFGI-GFHGRIHITEVNDDKSNVVENLFSNFKIGQT 991
            S  +G  V  EI  I    L LRLK  + G  G+ H T              S  K+G  
Sbjct: 739  SVTLGQKVTGEIERITKYGLVLRLKDNLMGVVGKDHYT--------------SEHKVGDK 784

Query: 992  VTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDN 1051
            V   I+ K+   D     L ++S+ P ++       K L +  D  +   + G +  + N
Sbjct: 785  VFGTILWKNYIHD-----LVDVSLLPKIVNGISSKQKTLPQLPDTLV---LRGQIMMITN 836

Query: 1052 EWALLTISRHLKAQLFIL 1069
             + L+ + RH    L  L
Sbjct: 837  WFLLVLVKRHGSGYLVAL 854


>gi|347970192|ref|XP_313352.5| AGAP003595-PA [Anopheles gambiae str. PEST]
 gi|333468818|gb|EAA08922.6| AGAP003595-PA [Anopheles gambiae str. PEST]
          Length = 1470

 Score =  197 bits (500), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 179/307 (58%), Gaps = 5/307 (1%)

Query: 1506 DEAKTIDEKNNRHAKKKEK-EEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFV 1563
            D+A+T+ +K    +++ E  ++ E  +R  EE L +    P TPD+F+RLV + PN+S +
Sbjct: 1160 DQAETVPKKRATASERFEAMKQEEARLRKIEEELADPSLDPHTPDQFDRLVLAQPNNSML 1219

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            WI+YMAF +  A+++KAR++  +AL+ I+ RE  E+LN+W+A  NLE  Y     ++  +
Sbjct: 1220 WIRYMAFHMESAELDKARAVGRKALKAIHFRENAERLNVWIALLNLELRYETI--DSFKE 1277

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-Q 1682
            V Q A+QY D  KV+   L +    ++ +   ++L +++KKF+    +W        +  
Sbjct: 1278 VLQEAIQYNDAFKVYTRALDILIDCQKPEEVQKILEQLLKKFRKQNDMWYLVADAWYRIG 1337

Query: 1683 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742
            Q   V+ ++ +AL SLP   HI  I + A L  +N   D    +FE IL+ YPKRTD+WS
Sbjct: 1338 QGSKVKPLLSQALKSLPTRDHIPLILKFAFLHNRNENRDEAHLLFEQILTSYPKRTDIWS 1397

Query: 1743 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
             Y+D  ++   V+  R + ERAI   LP K MK L+ K++ +E+  G+ E +  VK  A 
Sbjct: 1398 QYVDMLVKDNLVENARQILERAIMQRLPMKNMKTLYTKFVNFEEKHGDRESVRRVKHLAA 1457

Query: 1803 EYVESTL 1809
            EYV++ L
Sbjct: 1458 EYVQAQL 1464



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 150/619 (24%), Positives = 278/619 (44%), Gaps = 65/619 (10%)

Query: 6   ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDN--EIEANEDNLLPT 60
           + AGM L G V ++   +L+I LPG L G+ +    ++A    L++     + +   L  
Sbjct: 80  VRAGMLLLGCVKQIRATELLISLPGRLNGIVQITNISEAYSKRLEHMYNTRSTDCPTLGD 139

Query: 61  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 120
           ++ VG LV   VL+   D+     R+++L+L  S L+       + EG+VL A +   ED
Sbjct: 140 LYTVGDLVYMKVLRKVKDR-----RQVYLTLDPSKLHSDFKPAQLVEGLVLAATITVKED 194

Query: 121 HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRK---VVYLSSDPDT 177
           HGY +  G+ +   FLP+ +L  N   +   G  L   + S+ ++     VV  +  PD 
Sbjct: 195 HGYTMDIGVHNVRAFLPQEHLNGNRDDE---GRNLFCSIHSVTQSGSGAVVVLKAFRPDE 251

Query: 178 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM-LSFLTYFTGTVDIFHLQNTFPTT 236
                  +++ ++++ +VPG  ++  V   +E G+  + F    T  V+   L      T
Sbjct: 252 PR---VLNVEEVAVETIVPGCQLTFTVGEPVEYGLRGMLFEDSITAYVNRNMLTK---VT 305

Query: 237 NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK-VGDIYDQSKVVRVD 295
           +    Y+  K + A +L+V P +  V ++L PY  +NRA       VG I ++++V   D
Sbjct: 306 SNPEKYSMFKTLPATLLYVMPVTNEVFVSLRPY-PNNRADCGQAHMVGSIVEKARVKSTD 364

Query: 296 RGLGLLLD--------IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 347
            G G+ L+        +P   +   A        +E V  +   ++ G+  RV ++ F  
Sbjct: 365 GG-GVWLEFGNKCRALLPMGVIRKTAEAAAGGNVDESV--MLSNFQVGTTHRVGVVYFDP 421

Query: 348 LEGLATGILKASA--FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 405
           LE  +T I+  S    E ++    DV+ G   K +V+ + S GA+V   G V  +     
Sbjct: 422 LE--STYIVSNSPDHAETMIQDSFDVEIGKTYKCRVLQLLSTGALVGV-GRVTGIV---- 474

Query: 406 MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAE----AT 459
             ++E      K KV   +  R +  G+ +  +  T++  L+  K  IL  +++      
Sbjct: 475 --KYEFFNRDSKLKVRDVVPMRAVCRGLDNDFLMFTNQPMLLNEKAPILMHWSQLDRNRK 532

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGF--APRSELGLDPGCEPSSMYHVGQVVKCRIMS 517
           D+    G +++I+K   +VRF+N + G   A  +  G D   E + +   G +    ++ 
Sbjct: 533 DQKFV-GAVSQIQKSYVWVRFFNNLSGRINASVTVAGQDEA-EVAKLRQ-GSIRLFTVLD 589

Query: 518 SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
               +  I+L+      + + D  V+   L    V  V  +A    V+ +   +GTIP E
Sbjct: 590 FDEGANIIDLAL-----KQTSDQPVRTAQLARVTVSYV--HATGAEVLTENGEQGTIPAE 642

Query: 578 HLADHLEHATVMKSVIKPG 596
             ++  EH ++   +++ G
Sbjct: 643 CFSEFGEHNSLYMRLLRGG 661


>gi|328697853|ref|XP_001951020.2| PREDICTED: protein RRP5 homolog [Acyrthosiphon pisum]
          Length = 337

 Score =  197 bits (500), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 106/269 (39%), Positives = 162/269 (60%), Gaps = 4/269 (1%)

Query: 1531 IRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1589
            +R  EE L + +  P+  D F+RLV S+PNSSF+WIKYMA  L   +VEKAR+ A+RAL 
Sbjct: 71   LRKVEEELTQIETNPQNADHFDRLVLSNPNSSFIWIKYMACHLQATEVEKARATAKRALS 130

Query: 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649
             I+ REE EKLNIW A  NLEN YG   +E+  +    AL+  D  ++++ +L ++  + 
Sbjct: 131  IIDTREEQEKLNIWTALLNLENLYGT--KESFKQTMDEALRSNDEYQIYIKILDIFAESN 188

Query: 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFIS 1708
            + K  +EL+ K+ +KF+ S   +L       K  + G  + ++Q+AL +LP   H+  IS
Sbjct: 189  KLKELEELITKINRKFRDSLDAYLHCATVYFKLNKPGKARFILQKALSNLPTKSHVTMIS 248

Query: 1709 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1768
            + A++E  +G  +  +++FE +L+ YP R D+WS+Y+D  I+   +DL R   ERA    
Sbjct: 249  RFALVENSDGSPEEAQTLFEHVLTSYPSRIDVWSLYVDMLIKSNRIDLARHALERATIQK 308

Query: 1769 LPPKKMKFLFKKYLEYEKSVGEEERIEYV 1797
            L PKKMK LF K++  E   G  E ++ V
Sbjct: 309  LAPKKMKSLFNKWMMLEGKYGTSESVDKV 337


>gi|71650829|ref|XP_814104.1| rRNA biogenesis protein [Trypanosoma cruzi strain CL Brener]
 gi|70879049|gb|EAN92253.1| rRNA biogenesis protein, putative [Trypanosoma cruzi]
          Length = 669

 Score =  196 bits (499), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 191/330 (57%), Gaps = 19/330 (5%)

Query: 1489 DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD 1548
            + + D ++ I  N G TD       KN    +K  K + E+ I A E R +E   P +PD
Sbjct: 310  ETESDENDSIDDNDGTTD-------KNGGREQKLRKRKIEEAIDAYE-RSMETTVPSSPD 361

Query: 1549 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1608
            EF RL+ ++PN+S++W+++MA  +++   E+AR +AE+AL TI +RE  E+LN+WVAY N
Sbjct: 362  EFRRLLLAAPNNSYLWVQWMAHHVALQQQEEARLVAEKALSTIGVRETQERLNVWVAYMN 421

Query: 1609 LENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1667
            LEN +G    E++  VF+RALQ   D   V+  L  ++  T +      L   M+ KF++
Sbjct: 422  LENIHGT--VESLSAVFKRALQRAPDQLVVYERLADIFSATRKPNQLLALCRNMVSKFRN 479

Query: 1668 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
              + W R  + L+ Q +++ ++ +V+    +L R  +   + + A+ E+K+G  + GR++
Sbjct: 480  EQRTWERLGKVLIDQKKRDQLRRMVKDMGGALRRDAYSLTVVRLAVHEYKSGSVENGRAL 539

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERAISLSLPPKKMKFLFK 1779
            FEG++   PK++D+WS YLDQE+ L         V L+R L ERA++ +   K M+    
Sbjct: 540  FEGLVVRMPKKSDVWSAYLDQEMALLVRRDESAAVPLVRALLERAVATNFSAKVMQQFLT 599

Query: 1780 KYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
            +++ +E++ G    +E VK +A  YVE+ +
Sbjct: 600  RFMSFERAYGSPADVEKVKTRARSYVEAKI 629


>gi|429328604|gb|AFZ80364.1| hypothetical protein BEWA_032170 [Babesia equi]
          Length = 366

 Score =  196 bits (499), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 177/302 (58%), Gaps = 21/302 (6%)

Query: 1521 KKEKEEREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMADV 1577
            KK + + E+++R  E+R ++ +    P+   +FERL+ ++ NSS VWI YMAF L++ D 
Sbjct: 62   KKSEYKNEEKVRELEKRNVDNEWMSNPNSVLDFERLIMTNGNSSAVWIGYMAFHLNVGDT 121

Query: 1578 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1637
            E AR    R L  I+ RE  EK N+W+AY N+E  YG    E ++ VF  A+QY D K +
Sbjct: 122  EMARKTVRRGLARIDFREMTEKQNLWLAYLNMECMYG----EDIMSVFNEAVQYNDAKTM 177

Query: 1638 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---QQEGVQAVVQRA 1694
            +   +G++   ++ + A E+  K IKKF  S K+WL  +  L +     +EG QA  +  
Sbjct: 178  YKKAIGIFISNKKLEEAKEVCLKGIKKFGKSKKIWLLYITLLYQHIGDAEEGRQA-HKMC 236

Query: 1695 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1754
            +  +P+HK I   S TA+LE+K G  + G+  FE IL + PKRTD+W  Y+   I+L   
Sbjct: 237  INRIPKHKRIFVSSATALLEYKFGSPEIGKRYFEDILLDNPKRTDVWVQYICAHIKLHIE 296

Query: 1755 D----------LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804
            D           IR LF+R I+L L PKKMK +F K+LE+E + G E+  E V++KA+ Y
Sbjct: 297  DDSKQKSERLKTIRNLFDRIITLDLKPKKMKIIFSKWLEFECNHGNEKSKEMVQRKALAY 356

Query: 1805 VE 1806
            VE
Sbjct: 357  VE 358


>gi|342179842|emb|CCC89316.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 672

 Score =  196 bits (499), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 194/345 (56%), Gaps = 16/345 (4%)

Query: 1478 ASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID----EKNNRHAKKKEKEEREQEIRA 1533
            ++ PP    L    P  D+   Q +   +E  + D    ++N   + +K +  + +E   
Sbjct: 286  SAAPPFAAGLSGNFPWRDHK-RQRRAEAEEDFSDDTGEDQENAAMSSRKMRRRKLEEAID 344

Query: 1534 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
            A ER +E   P +P+EF+RL+ +SPN+S++W+++M   +S+   E AR +AE+AL TI +
Sbjct: 345  AYERSMETAVPSSPEEFQRLLLASPNNSYLWVQWMTHHVSLQQYEDARLVAEKALSTIGV 404

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNK 1652
            RE  E+LN+WVAY NLEN +G    E++  VF+RALQ+  D   V+  L  ++  T ++ 
Sbjct: 405  RESQERLNVWVAYMNLENLHGTA--ESLASVFKRALQHALDELVVYERLADIFGATHKSA 462

Query: 1653 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1711
                L   M+ K++   + W R    L+ Q +++ ++ V++    +L R ++   +    
Sbjct: 463  QLLSLCRTMVSKYRKVPRTWERLGTVLIDQNRRDLLKRVLKDMNGALRRDEYAVTVVHLG 522

Query: 1712 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERA 1764
            + E++NG  +  R++FEG+L   PK++D+WS+YLDQE+ L         V  +R LFERA
Sbjct: 523  VHEYRNGSVENARALFEGLLLRMPKKSDVWSVYLDQELGLLARRAESSSVAFVRSLFERA 582

Query: 1765 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
            ++ S   K M+ +  +++ +E+  G    +E VK +A  YVE+ +
Sbjct: 583  VATSFSAKIMQQILTRFMSFERVHGTPADVERVKARARSYVEAKI 627


>gi|194770786|ref|XP_001967469.1| GF20724 [Drosophila ananassae]
 gi|190618479|gb|EDV34003.1| GF20724 [Drosophila ananassae]
          Length = 1424

 Score =  196 bits (498), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 184/328 (56%), Gaps = 18/328 (5%)

Query: 1484 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEE--REQEIRAAEERLLEK 1541
            + N  DE  D D   +Q            +K    AK+K K E   EQ +R  EER  + 
Sbjct: 1105 KTNSSDEDEDQDAAEAQPA----------KKKRLSAKEKAKAEVREEQRLREIEERNADP 1154

Query: 1542 DAP-RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1600
             A   T D++ERLV + PN+S  W+KY+AF+LS  ++EKAR +A RA+ TI+ RE  E  
Sbjct: 1155 KARLETIDQYERLVIAQPNNSISWLKYIAFLLSNTEIEKARDLARRAISTISFRETQELR 1214

Query: 1601 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1660
            N+W A  N+E  YG+  +E    V + AL+  DP ++++ ++ + ++ +Q +     L  
Sbjct: 1215 NVWSALLNMELAYGSNFDE----VLKEALKCNDPLEIYICVVDILKKNKQRERLSSTLTT 1270

Query: 1661 MIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1719
            ++ KFK   ++W    +      + + V +++QRAL  LP  +HI  I   A L  +N  
Sbjct: 1271 ILNKFKAQARIWPVVAEAYFWLGKSDQVHSLLQRALKVLPNQEHINCIVSFAKLYARNDA 1330

Query: 1720 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1779
             D  +++ + +++ YPKR D+WS+Y+D  I+ G VD  R + ERA+   L P KM+ ++K
Sbjct: 1331 NDMAQTLLDDVVTSYPKRIDIWSVYVDMLIKAGLVDSARNVLERAVLQKLKPNKMQVIYK 1390

Query: 1780 KYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            KYL+ E + G E  +  VKQ+A ++V++
Sbjct: 1391 KYLQLELNHGTEASVAKVKQQAEQWVKN 1418



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 189/857 (22%), Positives = 344/857 (40%), Gaps = 84/857 (9%)

Query: 10  MKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEIEANEDNL--LPTIFHV 64
           M + GVV  V    L + LPG +      AD   A   +    +  +  +   L  +F  
Sbjct: 75  MLVMGVVKGVTPTALQVALPGRMFARTLVADISEAYTRVAKAAMSGDTTDYHDLTELFQP 134

Query: 65  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
           G++V    ++ D  K    +  + LSL+ S ++  L  + +++G + +  V+ I++HGY+
Sbjct: 135 GRIVYGRAIKTD--KLNCNRTTLLLSLKPSEVHSSLHHKNIKKGFIFSGAVEEIQEHGYV 192

Query: 125 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 184
           +  G+     F+      E S   +  G L    V+ I         +      S+   K
Sbjct: 193 IETGVQGLQAFVA----CEESKQSLHVGQLAFVKVQQIQHDTHKSTCTCVLVDQSQLKVK 248

Query: 185 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKNDYN 243
                ++D ++PG +V  +V   L++G+  S +   F    +  HL +   T    + Y 
Sbjct: 249 SQNESNLDYILPGSIVRFKVSKHLKDGLKGSIMNESFAAYTNEHHLASPLDTL---DAYE 305

Query: 244 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH---------------VKVGDIYDQ 288
            ++   AR+L+V P ++ V LTLN   L  +  P                 +KVG + ++
Sbjct: 306 LNQDYYARVLYVMPLTKLVYLTLN---LDIKTDPETGIQQDDADGDEELEPLKVGSVVEK 362

Query: 289 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFR 346
           +KV+R+  G G++L +        ++ +I    +    K E   KY   +  +VRILG+ 
Sbjct: 363 AKVLRLGSG-GVVLLLNKKLKGIISFKSIRSNYKGNYDKDEVLSKYGRKTKHKVRILGYD 421

Query: 347 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPH 405
            +E +       +     VF+ +D+  G +V  K++   D         G V A     +
Sbjct: 422 VIESMYYCSDAPNVVNEKVFSLTDISAGDIVTAKIVKKNDKINGWTLKIGKVNATLEQLY 481

Query: 406 MSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLI 463
           ++      P  +++ G  L  RVL V S R    ++++   +   L +L+  + A    +
Sbjct: 482 LA------PNVRYEAGQPLRCRVLEVNSDRKICYLSNRSEYLAKGLKLLTDLSSAQVGGV 535

Query: 464 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 523
             G + + + H   V+F +G++G   R  +      +  S +  GQ  K RI+S      
Sbjct: 536 YTGTVVRCDDHLVLVKFGSGIEGVLYRQNM------KGQSSFFEGQTTKFRILSR--NKD 587

Query: 524 RINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK--------GTIP 575
           +I L+      ++ E   V++ + +   +++    A                    G IP
Sbjct: 588 KITLTLPEDKFQLGEICPVEITNTLDAGLEIKITYAAEEDKEDDEEDGDPKVEEFVGLIP 647

Query: 576 TEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 635
              L+DHLE       V   G   +   ++ N  S  L    Y     + Q+  D   + 
Sbjct: 648 LRLLSDHLELLQAQVRVHPVGSLTEAACIVQNIFS--LRDVAY----FSGQITKDWKSVQ 701

Query: 636 PNSVVHGYVCNIIETGCFVRFLGRLTGF-APRSKAVDGQRADLSKTYYV----GQSVRSN 690
              ++  YV N  E    V  +  +  +  P    V   R +  K   V     Q +   
Sbjct: 702 VGDIIRSYVKNATEQ--VVDLMVSVRNYNKPVKVHVKMLRLNAVKNTPVELVPEQLLMVK 759

Query: 691 ILDVNSETGRITLSLKQSCCSS---TDASFMQEHFLLEEKIAMLQSSKHNGSE--LKWVE 745
           +L    ET  +T+S K +   S   TD +   E +L  +++A +++     S    K+  
Sbjct: 760 VLSKEPETKTLTVSAKLTDVWSGDLTDTAKSVERYL--DEVAQIRTGLKEISAPIAKYSV 817

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV-ESGSVIQAAILDVAK 804
           G  I  V +G   ES+D+  V + E  S     +       AT   +GS   A +L V  
Sbjct: 818 GEKINVVFQGINSESHDW--VYTVEGSSKTSALLLSSLAGTATAPPTGSKHPAVVLWVDY 875

Query: 805 AERLVDLSLKTVFIDRF 821
           +  ++ +S K V IDR 
Sbjct: 876 SSDVLLISNKKVDIDRI 892


>gi|402584047|gb|EJW77989.1| hypothetical protein WUBG_11104, partial [Wuchereria bancrofti]
          Length = 345

 Score =  196 bits (498), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 168/269 (62%), Gaps = 6/269 (2%)

Query: 1533 AAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1591
            A E ++LE D  P   ++F+RLV  SPNSS +WI+Y+ F L   D++KAR++AERAL  I
Sbjct: 77   ARERKILEADWIPDNTNDFDRLVTGSPNSSILWIRYITFFLEQNDIDKARAVAERALSVI 136

Query: 1592 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1651
            N REE+E  N+W AY NLE  +G    E++  VF  A++  DP K++  ++ +Y++ E+ 
Sbjct: 137  NFREEDEIFNVWTAYLNLEGNFGT--NESLKAVFANAVRNTDPLKMYKQMVKIYQKLEKI 194

Query: 1652 KLADELLYKMIKKFKH-SCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQ 1709
            +  D+LL +M+K+F+H    VW    Q LL+ ++ +  + ++++A+  L R  H+  +S+
Sbjct: 195  EEIDDLLEEMLKRFRHDDLDVWFIYGQHLLETKRPDKARNLMKKAINCLQRKHHVTILSR 254

Query: 1710 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1769
             A LEFK G  ++ +++FE IL+ YPK+TD+W++Y+D  I+   +D  R L ER  +L L
Sbjct: 255  FAQLEFKFGDMEQSKTIFESILNSYPKKTDVWTVYIDLLIKAEKIDDARQLLERVTALKL 314

Query: 1770 PPKKMKFLFKKYLEYEKS-VGEEERIEYV 1797
               K++  +K  L + KS V    R  YV
Sbjct: 315  STHKIRLFYKNGLIWNKSMVMRSNRTMYV 343


>gi|343470403|emb|CCD16896.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 672

 Score =  196 bits (497), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 194/345 (56%), Gaps = 16/345 (4%)

Query: 1478 ASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID----EKNNRHAKKKEKEEREQEIRA 1533
            ++ PP    L    P  D+   Q +   +E  + D    ++N   + +K +  + +E   
Sbjct: 286  SAAPPFAAGLSGNFPWRDHK-RQRRAEAEEDFSDDNGEDQENAAMSSRKMRRRKLEEAID 344

Query: 1534 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
            A ER +E   P +P+EF+RL+ +SPN+S++W+++M   +S+   E AR +AE+AL TI +
Sbjct: 345  AYERSMETAVPSSPEEFQRLLLASPNNSYLWVQWMTHHVSLQQYEDARLVAEKALSTIGV 404

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNK 1652
            RE  E+LN+WVAY NLEN +G    E++  VF+RALQ+  D   V+  L  ++  T ++ 
Sbjct: 405  RESQERLNVWVAYMNLENLHGTA--ESLASVFKRALQHALDELVVYERLADIFGATHKSA 462

Query: 1653 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1711
                L   M+ K++   + W R    L+ Q ++E ++ V++    +L R ++   +    
Sbjct: 463  QLLSLCRTMVSKYRKVPRTWERLGTVLIDQNRRELLKRVLKDMNGALRRDEYAVTVVHLG 522

Query: 1712 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERA 1764
            + E++NG  +  R++FEG+L   PK++D+WS+YLDQE+ L         V  +R LFERA
Sbjct: 523  VHEYRNGSVENARALFEGLLLRMPKKSDVWSVYLDQELGLLARRAESSSVAFVRSLFERA 582

Query: 1765 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
            ++ +   K M+ +  +++ +E+  G    +E VK +A  YVE+ +
Sbjct: 583  VATNFSAKIMQQILTRFMSFERVHGTPADVERVKARARSYVEAKI 627


>gi|17552198|ref|NP_498398.1| Protein LET-716 [Caenorhabditis elegans]
 gi|351047543|emb|CCD63223.1| Protein LET-716 [Caenorhabditis elegans]
          Length = 1743

 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/266 (37%), Positives = 166/266 (62%), Gaps = 5/266 (1%)

Query: 1545 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1604
            ++ ++  RLVRS PNS+  WI+YM+  +  +D+  AR  AE AL  IN  E +E L IW 
Sbjct: 1470 KSEEDHSRLVRSDPNSAINWIEYMSHFIEKSDLAAARKTAEEALGAINPTESDELLKIWT 1529

Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1664
            AY N+E  YG+     V KVF+RA +  +   VH  L  +Y++ E+N  A ++L +M+KK
Sbjct: 1530 AYLNMEVAYGDAA--TVQKVFERACKNANAYTVHKTLSKIYQKFEKNAEATQILEQMVKK 1587

Query: 1665 FK-HSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVAD 1721
            F+ +  +VW    + L+ Q  Q+  + ++ RAL S P+  +H++ IS+ A LEFK+G A+
Sbjct: 1588 FRANQLEVWTLLAEHLMTQNDQKAARELLPRALKSAPKAQQHVQLISKFAQLEFKHGDAE 1647

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            RGR++ EG+++ +PK+TDLW +Y +  ++   ++  R + ERA +L     KM+ L+KK+
Sbjct: 1648 RGRTLLEGLVTAHPKKTDLWLVYAEAVLKHLGIEHARKVLERACNLGFSIHKMRPLYKKW 1707

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVES 1807
            LE E   G+   +E VK KA +++++
Sbjct: 1708 LEMESKHGDAAAVELVKAKAEKFLQA 1733



 Score = 68.6 bits (166), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 164/766 (21%), Positives = 304/766 (39%), Gaps = 83/766 (10%)

Query: 53  NEDNL-LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 111
           NE+ + +   F +GQ+V   V+     K+   K K+  +   + L K LS   +  G+VL
Sbjct: 113 NEEKIEIKNAFQLGQMVPFRVIS---KKQGNDKGKVKGTCNPARLNKHLSPNMLAAGLVL 169

Query: 112 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
              V SIE+ G IL  GL   TGF+ ++         +K G+ L  +VR +  T +VV +
Sbjct: 170 HTAVVSIEEKGAILDVGLDQITGFIEKSQFP---AAGLKEGMPL--IVRVLSSTSRVVKV 224

Query: 172 SS----DPDTVSKCVTKDLKGISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGTVDI 226
           +S    D   ++ C     + + ++ L+PG ++        +  GV+++      G +  
Sbjct: 225 TSFVEQDNLNMTSC-----EKLQLNHLMPGTILECEPTGDAVTAGVIVNIGNGLKGILP- 278

Query: 227 FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVK 281
              +   P    +N     K + A ++F    S+ + L  +P +     +  R     + 
Sbjct: 279 ---RRNLPPRLRENPEKLGKAIRAIVMFCQQNSKILVLNAHPDIVAASRIEKRTSFEGIS 335

Query: 282 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRV 340
           +GD    + +  +     +   +P+          +S     E+  ++  +Y+ G+    
Sbjct: 336 IGDKVKCTVIDVLPTKSMVYFALPAIDGKKSLVTAVSSRGLLEKPDQVSTEYEVGTEKLC 395

Query: 341 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
           R+ GFR+ +   T   +       +  + D K G V+  +V  V   G        VKA 
Sbjct: 396 RVTGFRYADRSITISTRKDILNQKITKYQDAKCGDVLDARVHHVAKSGVYFMVCNFVKAF 455

Query: 401 CPLPHMSEFEIVKPGKK----FKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSS 454
            PL  +S+  +  P +K    +KVG E+  RV  +  + K + VT +++++  K   ++S
Sbjct: 456 APLSMLSDKPL--PAQKMKNIYKVGTEVKCRVWQICDERKNLIVTCRESILGLKSPSVNS 513

Query: 455 YAEATDRLITHGWITKIEKHGC-FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 513
             E    +     I K+   G   +  +N + G   +      PG   ++ + V  V K 
Sbjct: 514 VQELEIGVTVPCVIRKVFPTGVLLLGTFNNICGVLRKESAVHLPGTPKNNDFVVANVEKI 573

Query: 514 RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY---VIAKGYS 570
                +   R +N S  +   + SE  LV+  +   G + +       +Y   + AK   
Sbjct: 574 EDNRVVFVLRDVNPSAAVANGQNSEKKLVQRPNPADGGISIGK-----IYKGSLCAKAGE 628

Query: 571 KGTIPTEHLADHLEHATVMKSVIK-----PGYEFDQLLVLDNES-SNLLLSAKYSLINSA 624
           K  +          +A+V   ++      P     +LL+ + E  S ++   K + IN A
Sbjct: 629 KANVTFTGEGKKEVYASVDDHLLSDLLDAPIGLTKRLLIENKEDISTIVPMGKMAAINRA 688

Query: 625 ------------QQLPSDASHIHPNSVVHGYVCNII-ETGCFVRFLGRLTGFAPRSKAVD 671
                        +LP     +    V+ G V  +I   G FV  +G   G     K ++
Sbjct: 689 CVKRSVASFVKGMKLPKKIDELKVGKVIVGIVGQVITNVGVFVELVG---GSGLVGKVLE 745

Query: 672 GQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 730
            + A + S+   VGQ +   I  +++        L   C        M + + L     +
Sbjct: 746 RKNAKNTSELLEVGQVIVGTIESIDTTKKSF---LIDPCTDLETGELMLKKYAL----PL 798

Query: 731 LQSSKHNGSELKWVEGF----IIGSVIEGKVHESNDFGVVVSFEEH 772
           L+S      E+KW+       I GS + GKV +  D   +V FE +
Sbjct: 799 LESIVE---EVKWLAEQSNYPIPGSKVNGKVTKELDDLTLVEFEHN 841


>gi|407843923|gb|EKG01697.1| rRNA biogenesis protein, putative [Trypanosoma cruzi]
          Length = 669

 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 189/328 (57%), Gaps = 19/328 (5%)

Query: 1491 QPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEF 1550
            + D ++ I  N G TD       KN    +K  K + E+ I A E R +E   P +PDEF
Sbjct: 312  ESDENDSIDDNDGATD-------KNGGREQKLRKRKIEEAIDAYE-RSMETAVPSSPDEF 363

Query: 1551 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1610
             RL+ ++PN+S++W+++MA  +++   E+AR +AE+AL TI +RE  E+LN+WVAY NLE
Sbjct: 364  RRLLMAAPNNSYLWVQWMAHHVALQQQEEARLVAEKALSTIGVRETQERLNVWVAYMNLE 423

Query: 1611 NEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1669
            N +G    E++  VF+RALQ   D   V+  L  ++  T +      L   M+ KF++  
Sbjct: 424  NIHGT--VESLSAVFKRALQRAPDQLVVYERLADIFSATRKPNQLLALCRNMVSKFRNEQ 481

Query: 1670 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE 1728
            + W R  + L+ Q +++ ++ +V+    +L R  +   + + A+ E+K+G  + GR++FE
Sbjct: 482  RTWERLGKVLIDQKKRDQLRRMVKDMGGALRRDAYSLTVVRLAVHEYKSGSVENGRALFE 541

Query: 1729 GILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            G++   PK++D+WS YLDQE+ L         V  +R L ERA++ +   K M+    ++
Sbjct: 542  GLVVRMPKKSDVWSAYLDQEMALLVRRDESAAVPFVRALLERAVATNFSAKVMQQFLTRF 601

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVESTL 1809
            + +E++ G    +E VK +A  YVE+ +
Sbjct: 602  MSFERAYGSPADVEKVKTRARSYVEAKI 629


>gi|308499240|ref|XP_003111806.1| CRE-LET-716 protein [Caenorhabditis remanei]
 gi|308239715|gb|EFO83667.1| CRE-LET-716 protein [Caenorhabditis remanei]
          Length = 1758

 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/266 (37%), Positives = 166/266 (62%), Gaps = 5/266 (1%)

Query: 1545 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1604
            ++ +E  RLVRS PNS+  WI+YM+  +  +D+  AR  AE AL+ IN  E  E L +W 
Sbjct: 1485 KSEEEHSRLVRSDPNSAINWIEYMSLFVEKSDLTAARKTAEEALEAINPTESEELLKMWT 1544

Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1664
            A+ N+E  YG+     V KVFQRA +  +   +H  L  ++++ E+N  A ++L +M+KK
Sbjct: 1545 AFLNMEVAYGD--STTVEKVFQRACKNANAYTIHKTLAKIHQKFEKNAEATQILEQMVKK 1602

Query: 1665 FK-HSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVAD 1721
            F+ +  +VW    + L+ Q+ Q+  + ++ RAL S P   +HI+ IS+ A LEFK G A+
Sbjct: 1603 FRANKLEVWTLLAEHLMTQKDQKAARDLLPRALKSAPNAQQHIQLISKFAQLEFKFGDAE 1662

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            RGR++ EG+++ +PK+TDLW +Y D  ++   ++  R + ERA +L +   KM+ L+KK+
Sbjct: 1663 RGRTLLEGLVTAHPKKTDLWLVYADAALKHLGIEHARKILERACNLEMSVHKMRPLYKKW 1722

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVES 1807
            LE E   G+   ++ VK KA +++++
Sbjct: 1723 LEMESKHGDAAAVQLVKSKAEKFLQA 1748



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 186/439 (42%), Gaps = 30/439 (6%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLV 68
           G+   GVVAEV E  +V+   G       A++        E+   E   +   F VGQ++
Sbjct: 72  GLTGLGVVAEVFEDGVVLHTAGTHTVKIHASEVSKKF--TELFNAEKIEMKDAFQVGQMI 129

Query: 69  SCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF 127
              V+     KK IG K K   S   S L K LS   +  G+V+   V SIE+ G IL  
Sbjct: 130 PFRVIT----KKTIGDKGKAKASCNPSKLNKHLSPNMLVAGLVINTSVISIEEKGAILDV 185

Query: 128 GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS--DPDTVSKCVTKD 185
           GL   TGF+ ++     SG+  K GL L  VVR +  T +V+ ++S  + D ++    + 
Sbjct: 186 GLDQMTGFIEKSQFPA-SGL--KEGLPL--VVRILSTTSRVIKVTSFVEQDNLNMATCEK 240

Query: 186 LKGISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 244
           L+   ++ L+PG ++        +  GV++       G +     +   P    +N    
Sbjct: 241 LQ---LNHLMPGTILECEPTGDAVTAGVIVHIGNGLKGILP----RRNLPPRLRENPEKL 293

Query: 245 HKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVGDIYDQSKVVRVDRGLG 299
            K + A ++F    S+ + L  +P +     +  R     + +GD    + +  +     
Sbjct: 294 GKAIRAVVMFCQQNSKILVLNAHPDIVAVSRIEKRTSFEGISIGDKVKCTVIDAIPTKSI 353

Query: 300 LLLDIPSTPVSTPAYVTISDVAE-EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 358
           +   +P T         +S     E+   +  +Y+ G+    R++GFR+ +   T   + 
Sbjct: 354 VYFTLPPTDGKKSLVTAVSSRGLLEKPDAVASEYEVGTEKLCRVIGFRYADRTITVSTRK 413

Query: 359 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK- 417
                 + T+ D K G ++ G+V  V   G        VKA  PL  +S+  +  P  K 
Sbjct: 414 DILNQKITTYQDAKCGDILDGRVHHVTKSGVYFMVCNFVKAFAPLSLLSDKPLTVPKIKS 473

Query: 418 -FKVGAELVFRVLGVKSKR 435
            FKVG E+  RV  +  +R
Sbjct: 474 MFKVGTEMKCRVWQICEQR 492



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 149/366 (40%), Gaps = 73/366 (19%)

Query: 187 KGISIDLLVPGMMVSTRVQSILENGVMLSF-LTYFTGTVDIFHLQNTFPTTNWKNDYNQH 245
           K +S ++LV G++++T V SI E G +L   L   TG ++    ++ FP +  K      
Sbjct: 156 KHLSPNMLVAGLVINTSVISIEEKGAILDVGLDQMTGFIE----KSQFPASGLKEGL--- 208

Query: 246 KKVNARILFVDPTSRAVGLT-------LN----PYLLHNRAPPSHV----KVGDIYDQSK 290
             +  RIL    TSR + +T       LN      L  N   P  +      GD      
Sbjct: 209 -PLVVRIL--STTSRVIKVTSFVEQDNLNMATCEKLQLNHLMPGTILECEPTGDAVTAGV 265

Query: 291 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR---- 346
           +V +  GL  +L   + P                 R  E   K G  +R  ++  +    
Sbjct: 266 IVHIGNGLKGILPRRNLPP----------------RLRENPEKLGKAIRAVVMFCQQNSK 309

Query: 347 ------HLEGLATG-ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF---PGG 396
                 H + +A   I K ++FEG+         G  VK  VI      +IV F   P  
Sbjct: 310 ILVLNAHPDIVAVSRIEKRTSFEGISI-------GDKVKCTVIDAIPTKSIVYFTLPPTD 362

Query: 397 VKALCPLPHMSEFEIVKP---GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAI 451
            K        S   + KP     +++VG E + RV+G +   + ITV+ +K ++  K+  
Sbjct: 363 GKKSLVTAVSSRGLLEKPDAVASEYEVGTEKLCRVIGFRYADRTITVSTRKDILNQKI-- 420

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS--SMYHVGQ 509
            ++Y +A    I  G +  + K G +    N V+ FAP S L   P   P   SM+ VG 
Sbjct: 421 -TTYQDAKCGDILDGRVHHVTKSGVYFMVCNFVKAFAPLSLLSDKPLTVPKIKSMFKVGT 479

Query: 510 VVKCRI 515
            +KCR+
Sbjct: 480 EMKCRV 485



 Score = 40.4 bits (93), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 164/388 (42%), Gaps = 53/388 (13%)

Query: 809  VDLSLKTVFIDRFREANSNRQAQKKKRKREAS----KDLGVHQTV----NAIVEIVKENY 860
            VD   +T  I +    NS ++ + +    E      K+ GV++        + E  K N 
Sbjct: 962  VDDVARTTLIKKEFIGNSKKEKKTEDGSEEGKVRSIKNFGVYEGTVIGHAKLEENRKRNS 1021

Query: 861  LVLSLPEYNHSIGYASVSDY-----NTQKFPQKQFLN---GQSVIATVMALPSSSTAGRL 912
            L + +     ++G   VS++     N++  P ++FL     + VI  ++    S+   ++
Sbjct: 1022 LFVDIRLPGDNVGRLHVSEFPPNLLNSEN-PLEEFLTRNVNKKVIVRIIGFIKSAKGPKI 1080

Query: 913  LLLLKAISETETSSSKRA--KKKSSYDVGSLVQ----AEITEIKPLELRLK-FGIGFHGR 965
              L    S+ +    + A    KS+Y VG +++    A +TE + L++ +    IG   R
Sbjct: 1081 AELTMIPSKIQAGKVRAATLSYKSNYSVGDMIKCFGTATLTEKQQLKVEVNPVWIGSISR 1140

Query: 966  IHITEVNDDKSNVVENLFSNF--KIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1023
             ++TE  D K    +    +F  K G+   A++IA       +KS    L+     L  S
Sbjct: 1141 ENVTE--DLKITAADGGIVDFSLKKGEMRQAKVIAVD-----RKSMSMTLT-----LDTS 1188

Query: 1024 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF--ILDSAYEPSELQEF 1081
            E+ S+         IG  VTG V+ V   +  L +S   +A L    +   YE  E +  
Sbjct: 1189 EVDSEF-------KIGSTVTGRVFFVSKTYIRLKLSTGQQAVLTPTAITDKYESVE-EVV 1240

Query: 1082 QRRFHIGKAVTGHVLSINKEKKLLRLVLRP-FQDGISDKTVDISNDNMQTFIHEGDIVGG 1140
            +++  +G+ V      I  + K   +VL+  +    +++   +  DN    I EG    G
Sbjct: 1241 EKQMAVGQLVDVVCAKIQDKPKRHYVVLKSRYNSKTTNEKRKLILDN--KLIKEGSQFDG 1298

Query: 1141 RISKILSGVGGLVVQIGPHLYGRVHFTE 1168
             +    +  G L ++IGP + GR+   E
Sbjct: 1299 IVEN--ASKGSLFIEIGPGISGRIPVNE 1324


>gi|322704015|gb|EFY95615.1| rRNA biogenesis protein RRP5, putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1795

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/286 (38%), Positives = 171/286 (59%), Gaps = 11/286 (3%)

Query: 1527 REQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1586
            R+ EI       L+   P+T  ++ERL+   P+SS +WI+YM F + ++++ KAR +AER
Sbjct: 1491 RKGEIEVDRTAELDAHGPQTSSDYERLLLGQPDSSKLWIQYMEFQMKVSELAKAREVAER 1550

Query: 1587 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1646
            A+++INIR+E EKL +WVAY  LE  YG   ++ V  VF+RA QY D +KVH  L  +Y 
Sbjct: 1551 AIKSINIRKEEEKLKVWVAYLKLEVTYGT--KQTVEDVFKRACQYNDEQKVHEELASIYI 1608

Query: 1647 RTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKH 1703
            ++ + K AD+L   M+KKF   +  VW      L   + Q +  +A++ RA   LP H+ 
Sbjct: 1609 QSGKLKDADDLYESMLKKFGAKAPSVWTNYATFLSVTRNQPDRARALLPRATQRLPAHQS 1668

Query: 1704 IKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQE--IRLGDVDLIRG 1759
               + Q A LEF+  NG  +RGR+MFEG+L+ +PKR DLWS  LD E  +  GD   +R 
Sbjct: 1669 QNIVGQFAALEFRSPNGEPERGRTMFEGLLATWPKRGDLWSWLLDLEEGVAGGDPTAVRD 1728

Query: 1760 LFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804
            ++ER   +  L P + K  F +++++E+ +  + + E V  KA ++
Sbjct: 1729 VYERRTRVKGLKPNQAKKWFHRWVKWEEKLDPKGK-EKVMAKAQDW 1773



 Score =  178 bits (451), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 229/980 (23%), Positives = 440/980 (44%), Gaps = 121/980 (12%)

Query: 483  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRV 536
            G+ GF   S +    +D   E S  Y VG V K R++       + +LSF   ++    +
Sbjct: 475  GLGGFVHISRVKDGKVDALYESSGPYQVGSVHKGRVVGYSELDGQFHLSFEKSILDQQYI 534

Query: 537  SEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKS 591
              +D V +G++++  ++  V+    V  ++  IA G + G +   HL+D  L+H    + 
Sbjct: 535  RMED-VPIGAVITCEIEKLVIKEEGVRGLILNIADGIT-GYVAERHLSDIKLQHP---EK 589

Query: 592  VIKPGYEFDQLLVLDNE-SSNLLLSAKYSLINSAQQLPSDASHI--HPNSVVH----GYV 644
              + G +    ++  N  +  +  + K +L+NS      DA  I  H +++V     G +
Sbjct: 590  KFRKGMKVKARVLSTNPFTKEIRFTLKKTLVNS------DAPVIKSHEDAIVGLQVPGTI 643

Query: 645  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
              +   G  ++F GRL GF P S+  +    D ++ + +GQ V  +IL V+ E  R+ +S
Sbjct: 644  IKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQRRLIVS 703

Query: 705  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 764
             K       D     ++  L E +A   + K         E  +   +++ ++       
Sbjct: 704  CKDPGAFGLDKQTALKNLRLGELVAAKVTQK--------TEDQVFVELVDSQLK------ 749

Query: 765  VVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFRE 823
             ++     +D     + +Q A   + +G  +    +LD  +  R + L+ K   I   +E
Sbjct: 750  AILPVGHLTDKSA--SKNQFALKRISAGQTLSDLMVLDKNEKRRAIILTQKPSLIKASKE 807

Query: 824  AN--SNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 881
                SN +  K+     A     V       V +     L   LP+        S  D+ 
Sbjct: 808  GKLISNFEDAKQGTIVPAF----VRNVTQTAVFVQFAGNLSALLPKSRLPADVQSKPDFG 863

Query: 882  TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA----ISETETSSSKRAKKKSSYD 937
              K+   +      +++ +  L       R +++  A    I  TE    K +      +
Sbjct: 864  MHKYESIEV----KIVSVINDL-------RRIMVAHATAAPIEVTEKQKDKVSAPADGLE 912

Query: 938  VGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTA 994
             G++V A IT +K  +L ++       GR+ +++V D   ++ +       F   Q +  
Sbjct: 913  FGTVVTAVITSVKETQLNVQLTDTQVQGRVDVSQVFDQWEDITDPKKPLDKFHRKQQIEV 972

Query: 995  RIIAKSNKPDMKKSFL----------WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1044
            ++I   +  D +  FL           ELS K S +   E  + L  E   + +G     
Sbjct: 973  KVIGVHDAKDHR--FLPISHRSAHSVLELSAKNSDVE-GENPNTLSLES--LKVGDSHIA 1027

Query: 1045 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1104
            YV  V  ++  + +S  ++ ++  ++++ + S L + +  F +G A+   V  I+ EK  
Sbjct: 1028 YVNNVTPQFLWVNLSPSVRGRVSAMEASDDLSLLNDLEANFPVGSALKVRVKFIDAEKNR 1087

Query: 1105 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1164
            L L  R   D    + VD       T + +  ++ G+I+K+      L+V++   + G V
Sbjct: 1088 LDLSARSSTDS---QGVD------WTSLKQNMVLPGKITKV--NERQLMVKLSDIVSGPV 1136

Query: 1165 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1224
            H  ++ +         YD+   + L+ Y + Q ++  ++E+     G   + LS+R    
Sbjct: 1137 HLPDMAD--------DYDD--INTLN-YKKNQIIRVAIVEVD---AGNKRLRLSMRP--- 1179

Query: 1225 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1284
                  S  LS+ +    K +  +  ++   +V+G+VKNV+ KG F+ L   + A V ++
Sbjct: 1180 ------SRILSSTLPVADKEIANLSQVAAGDVVRGFVKNVSDKGLFVALGGHVTALVKIA 1233

Query: 1285 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1344
            NLSD +++  +  F + +LV GRVLSV+   K+VE++LK S +     + +   +++  G
Sbjct: 1234 NLSDRFLKDWKDLFQVDQLVKGRVLSVDSALKQVEMSLKAS-AVDEDYTPLVTYNDIKKG 1292

Query: 1345 DIVIGQIKRVESYGLFITIE-NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1403
             +V G++++VE +G FI ++ ++N+ GLCH S+++++ V +   +Y+ G+ VK  +L+VD
Sbjct: 1293 SVVTGKVRKVEEFGAFILVDKSSNVSGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVD 1352

Query: 1404 KEKRRISLGMKSSYFKNDAD 1423
              KRRIS G++ S F  D D
Sbjct: 1353 AVKRRISFGLRPSLFDEDTD 1372



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 185/716 (25%), Positives = 315/716 (43%), Gaps = 67/716 (9%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE-------------- 54
           G  + G +  +N  DL + LP  L G      A+   L N ++                 
Sbjct: 147 GSLVLGQITRINNLDLEVALPNNLTGHVSVV-AVSEQLTNRVQEAAAEQDDEEDESSDET 205

Query: 55  DNLLPTIFHVGQLVSCIVLQLDDDKKEIG----KRKIWLSLRLSLLYKGLSLETVQEGMV 110
           D  L ++F VGQ +   V+   D+   IG    KRKI LSLR +    GL  + +     
Sbjct: 206 DVDLKSMFVVGQYLRVYVVSTMDES-AIGNGKNKRKIELSLRPTETNSGLGKDDIVANST 264

Query: 111 LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRK 167
           + A V S+ED G ++  G+P    FLP   +  +S ID   ++ G +    V        
Sbjct: 265 VMASVVSVEDRGCVMDVGIPDLRAFLPHGEI--DSTIDQSRLQEGSVFLCQVTGKVSNGN 322

Query: 168 VVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 227
           V  LS     +        +  +I+  +PG  V   + +    G+    + +   T D+ 
Sbjct: 323 VAQLSLQQKKLGSPKDIPTEATTINTFLPGTNVDVLITNTDRRGLAGKVIGHLDVTADLV 382

Query: 228 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL----------HNRA 275
           H       T+ +  Y    KV AR++   PT++    G++L P++           +   
Sbjct: 383 HSGAGPLGTDLEATYKVGSKVKARVICNFPTAKEPKFGISLLPHITSLTRKHPAKDNKNL 442

Query: 276 PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---Y 332
           P   + +  + ++  V RV+  +GL +D     +    +V IS V + +V  L +    Y
Sbjct: 443 PTEALPISSLVEKCTVRRVESEIGLFVDTGIAGLG--GFVHISRVKDGKVDALYESSGPY 500

Query: 333 KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK----VIAVDSF- 387
           + GS  + R++G+  L+G      + S  +       DV  G V+  +    VI  +   
Sbjct: 501 QVGSVHKGRVVGYSELDGQFHLSFEKSILDQQYIRMEDVPIGAVITCEIEKLVIKEEGVR 560

Query: 388 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLV 445
           G I+    G+       H+S+ ++  P KKF+ G ++  RVL     +K I  T KKTLV
Sbjct: 561 GLILNIADGITGYVAERHLSDIKLQHPEKKFRKGMKVKARVLSTNPFTKEIRFTLKKTLV 620

Query: 446 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 505
            S   ++ S+ +A   L   G I K++ +G  ++FY  ++GF P SE+      +P+  +
Sbjct: 621 NSDAPVIKSHEDAIVGLQVPGTIIKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHF 680

Query: 506 HVGQVVKCRIMSSIPASRRINLSF-------MMKPTRVSEDDLVKLGSLVSGVVDVVTPN 558
            +GQVV   I+   P  RR+ +S        + K T +     ++LG LV+  V   T +
Sbjct: 681 RIGQVVSVHILHVDPEQRRLIVSCKDPGAFGLDKQTALKN---LRLGELVAAKVTQKTED 737

Query: 559 AVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLD-NESSN-LLL 614
            V V ++     K  +P  HL D    ++   +K  I  G     L+VLD NE    ++L
Sbjct: 738 QVFVELVDSQL-KAILPVGHLTDKSASKNQFALKR-ISAGQTLSDLMVLDKNEKRRAIIL 795

Query: 615 SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
           + K SLI ++++  L S+       ++V  +V N+ +T  FV+F G L+   P+S+
Sbjct: 796 TQKPSLIKASKEGKLISNFEDAKQGTIVPAFVRNVTQTAVFVQFAGNLSALLPKSR 851



 Score = 68.6 bits (166), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 190/904 (21%), Positives = 337/904 (37%), Gaps = 150/904 (16%)

Query: 474  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 533
             G  +   +G+ G+     L       P   +  G  VK R++S+ P ++ I   F +K 
Sbjct: 560  RGLILNIADGITGYVAERHLSDIKLQHPEKKFRKGMKVKARVLSTNPFTKEIR--FTLKK 617

Query: 534  TRVSEDDLVK-------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-----D 581
            T V+ D  V        +G  V G +  + PN    ++   G  KG +P   ++     D
Sbjct: 618  TLVNSDAPVIKSHEDAIVGLQVPGTIIKLQPNGA--HIQFYGRLKGFLPVSEMSEAYIRD 675

Query: 582  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 641
              EH  + + V         +L +D E   L++S K        +  +   ++    +V 
Sbjct: 676  PNEHFRIGQVVSV------HILHVDPEQRRLIVSCKDPGAFGLDKQTA-LKNLRLGELVA 728

Query: 642  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ-RADLSKTYYVGQSVRSNILDVNSETGR 700
              V    E   FV               VD Q +A L   +   +S   N   +     R
Sbjct: 729  AKVTQKTEDQVFVEL-------------VDSQLKAILPVGHLTDKSASKNQFALK----R 771

Query: 701  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 760
            I+     S     D +  +   +L +K +++++SK  G  +   E    G+++   V   
Sbjct: 772  ISAGQTLSDLMVLDKNEKRRAIILTQKPSLIKASKE-GKLISNFEDAKQGTIVPAFVRNV 830

Query: 761  NDFGVVVSFEEHSDVYGFITHHQLAGATVESG--------SVIQAAILDVAKAERLVDLS 812
                V V F    ++   +   +L  A V+S           I+  I+ V    R + ++
Sbjct: 831  TQTAVFVQFA--GNLSALLPKSRLP-ADVQSKPDFGMHKYESIEVKIVSVINDLRRIMVA 887

Query: 813  LKTVFIDRFREANSNRQAQKKKRKREASKD-LGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
              T        A      +K+K K  A  D L     V A++  VKE  L + L +    
Sbjct: 888  HAT--------AAPIEVTEKQKDKVSAPADGLEFGTVVTAVITSVKETQLNVQLTD-TQV 938

Query: 872  IGYASVS-------DYNTQKFPQKQFLNGQSVIATVMA---------LPSSSTAGRLLLL 915
             G   VS       D    K P  +F   Q +   V+          LP S  +   +L 
Sbjct: 939  QGRVDVSQVFDQWEDITDPKKPLDKFHRKQQIEVKVIGVHDAKDHRFLPISHRSAHSVLE 998

Query: 916  LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 975
            L A +      +       S  VG    A +  + P  L +       GR+   E +DD 
Sbjct: 999  LSAKNSDVEGENPNTLSLESLKVGDSHIAYVNNVTPQFLWVNLSPSVRGRVSAMEASDDL 1058

Query: 976  SNVVENLFSNFKIGQTVTAR---IIAKSNKPDM-------KKSFLWELSIKPSMLTVSEI 1025
            S ++ +L +NF +G  +  R   I A+ N+ D+        +   W  S+K +M+     
Sbjct: 1059 S-LLNDLEANFPVGSALKVRVKFIDAEKNRLDLSARSSTDSQGVDW-TSLKQNMV----- 1111

Query: 1026 GSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1085
                            + G + KV+    ++ +S  +   + + D A +  ++      +
Sbjct: 1112 ----------------LPGKITKVNERQLMVKLSDIVSGPVHLPDMADDYDDINTLN--Y 1153

Query: 1086 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRIS 1143
               + +   ++ ++   K LRL +RP +  I   T+ +++  +     +  GD+V G + 
Sbjct: 1154 KKNQIIRVAIVEVDAGNKRLRLSMRPSR--ILSSTLPVADKEIANLSQVAAGDVVRGFVK 1211

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
             +     GL V +G H+   V    L +  + D     D  Q D        Q VK +VL
Sbjct: 1212 NVSD--KGLFVALGGHVTALVKIANLSDRFLKD---WKDLFQVD--------QLVKGRVL 1258

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             +   ++    VE+SL++S               VD     L    D+    +V G V+ 
Sbjct: 1259 SVDSALK---QVEMSLKASA--------------VDEDYTPLVTYNDIKKGSVVTGKVRK 1301

Query: 1264 VTSKGCFIMLSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1321
            V   G FI++ +  +   L   S ++D  V+   K +  G  V   VL V+ + +R+   
Sbjct: 1302 VEEFGAFILVDKSSNVSGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRRISFG 1361

Query: 1322 LKTS 1325
            L+ S
Sbjct: 1362 LRPS 1365



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 38/236 (16%)

Query: 605  LDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
            +D  +  L LS + S I S+  LP      ++ S +    VV G+V N+ + G FV   G
Sbjct: 1166 VDAGNKRLRLSMRPSRILSST-LPVADKEIANLSQVAAGDVVRGFVKNVSDKGLFVALGG 1224

Query: 659  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 718
             +T     +   D    D    + V Q V+  +L V+S   ++ +SLK        AS +
Sbjct: 1225 HVTALVKIANLSDRFLKDWKDLFQVDQLVKGRVLSVDSALKQVEMSLK--------ASAV 1276

Query: 719  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 778
             E +                + L        GSV+ GKV +  +FG  +  ++ S+V G 
Sbjct: 1277 DEDY----------------TPLVTYNDIKKGSVVTGKVRKVEEFGAFILVDKSSNVSGL 1320

Query: 779  ITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 827
                Q+A   V+        G  ++A +L+V   +R +   L+    D   +  SN
Sbjct: 1321 CHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRRISFGLRPSLFDEDTDMESN 1376



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 138/314 (43%), Gaps = 47/314 (14%)

Query: 1135 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            G ++   I K++    GV GL++ I   + G V    L +I +  P     E +F     
Sbjct: 542  GAVITCEIEKLVIKEEGVRGLILNIADGITGYVAERHLSDIKLQHP-----EKKFR---- 592

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
              +G  VK +VL    T   T  +  +L+ +L              V++    ++  ED 
Sbjct: 593  --KGMKVKARVLS---TNPFTKEIRFTLKKTL--------------VNSDAPVIKSHEDA 633

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
               + V G +  +   G  I    +L   + +S +S+ Y+  P + F IG++V+  +L V
Sbjct: 634  IVGLQVPGTIIKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHFRIGQVVSVHILHV 693

Query: 1312 EPLSKRVEVTLKTS-----DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +P  +R+ V+ K       D +TA       L NL +G++V  ++ +     +F+ + ++
Sbjct: 694  DPEQRRLIVSCKDPGAFGLDKQTA-------LKNLRLGELVAAKVTQKTEDQVFVELVDS 746

Query: 1367 NLVGLCHVSELSEDHVDNIETIYR---AGEKVK-VKILKVDKEKRRISLGMKSSYFKNDA 1422
             L  +  V  L++      +   +   AG+ +  + +L  ++++R I L  K S  K   
Sbjct: 747  QLKAILPVGHLTDKSASKNQFALKRISAGQTLSDLMVLDKNEKRRAIILTQKPSLIKASK 806

Query: 1423 DNLQMSSEEESDEA 1436
            +   +S+ E++ + 
Sbjct: 807  EGKLISNFEDAKQG 820



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 168/386 (43%), Gaps = 46/386 (11%)

Query: 100  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGIDV 149
            LSLE+++ G    AYV ++      ++   PS  G +            N+L  N  +  
Sbjct: 1014 LSLESLKVGDSHIAYVNNVTPQFLWVNLS-PSVRGRVSAMEASDDLSLLNDLEANFPV-- 1070

Query: 150  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 209
              G  L+  V+ ID  +  + LS+   T S+ V  D   +  ++++PG     ++  + E
Sbjct: 1071 --GSALKVRVKFIDAEKNRLDLSARSSTDSQGV--DWTSLKQNMVLPG-----KITKVNE 1121

Query: 210  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 269
              +M+      +G V +  + + +   N  N Y +++ +   I+ VD  ++ + L++ P 
Sbjct: 1122 RQLMVKLSDIVSGPVHLPDMADDYDDINTLN-YKKNQIIRVAIVEVDAGNKRLRLSMRPS 1180

Query: 270  LLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 320
             + +   P         S V  GD+         D+GL + L    T     A V I+++
Sbjct: 1181 RILSSTLPVADKEIANLSQVAAGDVVRGFVKNVSDKGLFVALGGHVT-----ALVKIANL 1235

Query: 321  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVV 377
            ++  ++  +  ++    V+ R+L            LKASA +     + T++D+K G VV
Sbjct: 1236 SDRFLKDWKDLFQVDQLVKGRVLSVDSALKQVEMSLKASAVDEDYTPLVTYNDIKKGSVV 1295

Query: 378  KGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG---AELVFRVLGVK 432
             GKV  V+ FGA  +V     V  LC    M++  +    K +K G     LV  V  VK
Sbjct: 1296 TGKVRKVEEFGAFILVDKSSNVSGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVK 1355

Query: 433  SKRITVTHKKTLVKSKLAILSSYAEA 458
             +RI+   + +L      + S+ ++A
Sbjct: 1356 -RRISFGLRPSLFDEDTDMESNDSDA 1380



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 6/175 (3%)

Query: 369  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
            S V  G VV+G V  V   G  V   G V AL  + ++S+  +      F+V   +  RV
Sbjct: 1198 SQVAAGDVVRGFVKNVSDKGLFVALGGHVTALVKIANLSDRFLKDWKDLFQVDQLVKGRV 1257

Query: 429  LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGV 484
            L V S  K++ ++ K + V      L +Y +     +  G + K+E+ G F+     + V
Sbjct: 1258 LSVDSALKQVEMSLKASAVDEDYTPLVTYNDIKKGSVVTGKVRKVEEFGAFILVDKSSNV 1317

Query: 485  QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
             G   RS++  +   + + +Y  G  VK  ++      RRI  SF ++P+   ED
Sbjct: 1318 SGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRRI--SFGLRPSLFDED 1370


>gi|145544753|ref|XP_001458061.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425880|emb|CAK90664.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1495

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 155/251 (61%), Gaps = 10/251 (3%)

Query: 1549 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1608
            E+E+ + ++PNSS +WI+++A+      +E AR++ ERAL+ IN   E E+LN+W AY N
Sbjct: 1180 EYEKKILTNPNSSVIWIEFVAYAAENEGIESARNVIERALRVINFSNELERLNLWTAYLN 1239

Query: 1609 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1668
            LE  +G+  E+ ++ +F+R  Q CD KK+H+ L+ +Y + E+  L  EL    ++K+K S
Sbjct: 1240 LEFNFGS--EDNLINIFKRGCQNCDGKKLHIKLINIYRKAEKVDLTVELSRSFVQKYKQS 1297

Query: 1669 CKVWLRRVQRLLKQQ--------QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1720
            CK W+  +Q L++ Q        Q   +  + RA+  L + K +K +S    L+F+N   
Sbjct: 1298 CKSWMEFLQSLMEWQKVHDDENPQYSFKDTLNRAMQCLKKSKQVKLLSFYGRLQFQNNQI 1357

Query: 1721 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1780
            + G++ +E IL +   RTD+WS YLD  I+    D++R +F++AI  +  P+K+KFLFKK
Sbjct: 1358 EEGKTTYETILDKNSTRTDIWSQYLDLVIKYCQPDVVRSIFQKAIHNNKKPRKIKFLFKK 1417

Query: 1781 YLEYEKSVGEE 1791
             LEYEK +  +
Sbjct: 1418 QLEYEKLIWRQ 1428



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 122/546 (22%), Positives = 211/546 (38%), Gaps = 95/546 (17%)

Query: 62  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 121
           + VG+ V   V++      E    K+ LSL  +++   LS+  +  GM +    ++  + 
Sbjct: 153 YKVGEYVITKVIE------EQKSNKVQLSLHPNVINDQLSVNQLVVGMQIPGIAQTWNEF 206

Query: 122 GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 181
           G  ++FG   F+GF+    L        K G +    ++ +D+  K+     +   V   
Sbjct: 207 GTTINFGSQQFSGFINEKKL--------KCGRVYLFNIKEVDQKEKIAICDFEQRDVQ-- 256

Query: 182 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 241
             ++ K IS  LL PG +        +  G ++  L  F     IF             D
Sbjct: 257 -LQNKKQISKHLLTPGNIWKCNTAKSITGGQIVK-LNKFGVLGYIFQ------------D 302

Query: 242 YN--QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLG 299
           Y   Q K +  RI+  D  SR + L+     + N       +VG  Y Q  V+      G
Sbjct: 303 YQVEQEKNILCRIIGFDEPSRQIYLSSKQEHIDNTTYIPPYEVGQQY-QGVVINQQLYSG 361

Query: 300 LLL-------DIPST---------------PVSTPAYVTISDVAEEEVRKLEKKYKEGSC 337
             L       D   T               P+       I   A++E+      + + +C
Sbjct: 362 AYLVNAILNDDQAQTKKSKKAVKAKQPNLGPICMLNKTQIP--ADQEIVD----HIQRTC 415

Query: 338 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV----DSFGAIVQF 393
           +   I  F H+  ++  +             SD+  G +VKG V  V    DS+  ++  
Sbjct: 416 IIKEINYFDHVGFVSFEVNSKPKL-------SDLNVGAIVKGVVKQVLLKEDSYNVLLNI 468

Query: 394 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 451
                A+ P   MS++ +  P  KF+VG++L  R+L +  +   I VT K TL+ + + +
Sbjct: 469 NDNFHAILPSLQMSDYPLANP-PKFRVGSKLRVRILQIDEQHNNIIVTMKPTLL-TDIKV 526

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
             +  +       +G+  K  ++G  V+F+  + GF   S L LD G  P  +   GQ++
Sbjct: 527 FKTLDDVNVGDTLYGFTIKKLENGILVKFFQNIVGFL--SNLSLD-GQNPDDIKD-GQII 582

Query: 512 KCRIMSSIPASRRINLSFMM---KPTRVSEDDL------------VKLGSLVSGVVDVVT 556
           K  +     +  ++ LS      K  +V+E               + LG  V  VV  + 
Sbjct: 583 KVYVKYVNQSENKLLLSLKKIDPKQKQVNEGQTQNVVLTKHIKTKLNLGEKVQCVVSAIK 642

Query: 557 PNAVVV 562
            N V V
Sbjct: 643 NNVVYV 648


>gi|409083836|gb|EKM84193.1| hypothetical protein AGABI1DRAFT_117625 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1480

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 231/919 (25%), Positives = 394/919 (42%), Gaps = 109/919 (11%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---DNEIEANEDNL----- 57
           GMK+ G V  +    L+I LP  L G   + + +     +L   DN  E +++++     
Sbjct: 119 GMKILGQVVSIIPLGLIISLPNQLYGHVPITQISSQFTTVLERFDNRDEGSDEDIAMEDE 178

Query: 58  --------LPTIFHVGQLVSCIVLQLD----DDKKEIGK---------RKIWLSLRLSLL 96
                   L  +FHVGQ V  IV  +      D   +GK         R++ LSL    +
Sbjct: 179 DEDTQTPDLYGMFHVGQYVRAIVTNVHAAGVSDIMGVGKLRDDLAKASRRMELSLVPEKV 238

Query: 97  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQ 156
             G+    ++ G  ++A VKS+EDHGY L  G+   +GFL   ++  +S   +  G ++ 
Sbjct: 239 NAGVQKTDLKSGFTISAAVKSLEDHGYNLDLGVQDVSGFLSFEDVGRDSP-KLHVGHVIN 297

Query: 157 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS----IDLLVPGMMVSTRVQSILENGV 212
             V  I    +V  ++ D          D+  +S    ++ ++PG +V   + SI   G+
Sbjct: 298 VSVSKISANNRVCNVTMDFSLSFSSNHTDIFQLSEISSVNSVLPGTLVQCLITSINPEGI 357

Query: 213 MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---VDPTSRAVGLT---- 265
            L  L +F GTVD FHL    P       +    KV ARIL+     P   ++ L+    
Sbjct: 358 NLQVLGFFDGTVDQFHLPKNPPKP-----FKVGTKVKARILYNYSASPPKFSLALSEHVI 412

Query: 266 -LNPYLLHNRAPPSHVK----VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 320
            L PY++      S ++    VG + D  KV RV++  GL++ +         +V IS +
Sbjct: 413 RLRPYMVSIGEDSSLLEEAYPVGTVLDAVKVSRVEKERGLIVGLDG---QLEGFVHISHL 469

Query: 321 AEEEVRKLEK--KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 378
           +++ V  L     +K G+  R R+ G    +GL    LK S  E      +DV  G  V 
Sbjct: 470 SDDHVPSLTSIGPWKPGTIHRARVTGHFTFDGLLQLSLKRSVLEQKYIQVTDVGVGQTVT 529

Query: 379 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RI 436
           G +  +      V     +  +    H ++  +  P K+FKVG  +  RVL V ++  RI
Sbjct: 530 GTIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRVLVVDAEKNRI 589

Query: 437 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 496
           ++T KKTL+ S+L ILS+  +     + H  + K+      V FYN ++   P  E+   
Sbjct: 590 SLTAKKTLLNSQLPILSNIEDVQPEDLAHAVVFKVHDKHLLVEFYNNLKAVIPLKEVSET 649

Query: 497 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-DL--VKLGSLVSGVVD 553
           P    S  + VG+VVK RI+S     RRI  S        S   D+  V++G++V GVV 
Sbjct: 650 PVNSLSEAFSVGKVVKVRIISVQQNQRRIVASIRRATASGSATPDISKVEVGNIVEGVVA 709

Query: 554 VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMKSVIKPGYEFDQLLVLDNESSN- 611
            +  +  +++ +     K     ++LA+H       +KS +K G    +L+V+       
Sbjct: 710 EIHKDNAILF-LQPSNVKALHSLKNLANHRAIGLPQLKSELKVGERLYELVVVTRNLEKG 768

Query: 612 --LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
             ++ +A  S +    ++      IH   +V G V      G  V+    + G    +  
Sbjct: 769 FVIVANAPKSKLTLPSKIALSIDTIHIGQIVSGRVIRHTRLGALVKVTSHIGGIIHPTDV 828

Query: 670 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 729
            D     LS    V   V++ I+ V+ E  R+TLS +QS                  ++ 
Sbjct: 829 SDNFDNGLSYP-AVDSLVKAAIVKVDEEKRRVTLSTRQS------------------RLR 869

Query: 730 MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY--------GFITH 781
             Q+++    E+  +   I+G+ + G V    D G+ V+   + D           FI  
Sbjct: 870 PDQTTQVVDKEINDISDLILGASVRGFVKSIADHGLFVTVGRYIDARVQIRELFDDFIKD 929

Query: 782 HQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK 841
            +      +   +++  IL V    + V+L+        FR  + + + ++ + KR  S 
Sbjct: 930 WK---PRFQVNQLVKGRILSVDIENQKVELT--------FRSGDLSARQREAQTKRSPS- 977

Query: 842 DLGVHQTVNAIVEIVKENY 860
           DL   + V+ I++ + ENY
Sbjct: 978 DLHEGEKVDGIIKRI-ENY 995



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 162/606 (26%), Positives = 282/606 (46%), Gaps = 72/606 (11%)

Query: 842  DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 901
            D+GV QTV   ++ + ++ + ++L E    + + +       K P K+F  G S+   V+
Sbjct: 521  DVGVGQTVTGTIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRVL 580

Query: 902  ALPS-----SSTAGRLLL--LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLEL 954
             + +     S TA + LL   L  +S  E    +            L  A + ++    L
Sbjct: 581  VVDAEKNRISLTAKKTLLNSQLPILSNIEDVQPE-----------DLAHAVVFKVHDKHL 629

Query: 955  RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1014
             ++F       I + EV++   N +   FS   +G+ V  RII+             +  
Sbjct: 630  LVEFYNNLKAVIPLKEVSETPVNSLSEAFS---VGKVVKVRIISVQQN---------QRR 677

Query: 1015 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS-RHLKAQLFILDSA- 1072
            I  S+   +  GS    +   V +G  V G V ++  + A+L +   ++KA   + + A 
Sbjct: 678  IVASIRRATASGSATP-DISKVEVGNIVEGVVAEIHKDNAILFLQPSNVKALHSLKNLAN 736

Query: 1073 YEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            +    L + +    +G+ +   V+ + N EK  + +   P         + +S D     
Sbjct: 737  HRAIGLPQLKSELKVGERLYELVVVTRNLEKGFVIVANAPKSKLTLPSKIALSIDT---- 792

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            IH G IV GR+  I     G +V++  H+ G +H T+     VSD    +D G    LS 
Sbjct: 793  IHIGQIVSGRV--IRHTRLGALVKVTSHIGGIIHPTD-----VSD---NFDNG----LSY 838

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
                  VK  ++++    R         R +L    S    D +T V    K +  I DL
Sbjct: 839  PAVDSLVKAAIVKVDEEKR---------RVTLSTRQSRLRPDQTTQV--VDKEINDISDL 887

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
                 V+G+VK++   G F+ + R +DA+V +  L D +++  +  F + +LV GR+LSV
Sbjct: 888  ILGASVRGFVKSIADHGLFVTVGRYIDARVQIRELFDDFIKDWKPRFQVNQLVKGRILSV 947

Query: 1312 EPLSKRVEVTLKTSD--SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            +  +++VE+T ++ D  +R        + S+LH G+ V G IKR+E+YGLFI IE T + 
Sbjct: 948  DIENQKVELTFRSGDLSARQREAQTKRSPSDLHEGEKVDGIIKRIENYGLFIQIEGTKMS 1007

Query: 1370 GLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            GLCH SELS++   ++      +R G++VK  ++++D  K+RIS  +K S F    ++L 
Sbjct: 1008 GLCHKSELSDNKDADVSVALQNFRQGDRVKAVVIEID--KKRISFSLKPSLFVE--EDLD 1063

Query: 1427 MSSEEE 1432
             S+E+E
Sbjct: 1064 GSAEDE 1069


>gi|358379965|gb|EHK17644.1| hypothetical protein TRIVIDRAFT_76054 [Trichoderma virens Gv29-8]
          Length = 1796

 Score =  194 bits (493), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/285 (39%), Positives = 173/285 (60%), Gaps = 15/285 (5%)

Query: 1533 AAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1590
            A  +R  E DA  P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR IAERA+++
Sbjct: 1492 AQVDRTAELDAHGPQTASDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREIAERAIKS 1551

Query: 1591 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1650
            INIREE EKLN+WVAY NLE  YG+  ++ V  VF+RA QY D ++V+  L  +Y ++E+
Sbjct: 1552 INIREETEKLNVWVAYLNLEVAYGS--KQTVEDVFKRACQYNDEQEVYERLASIYIQSEK 1609

Query: 1651 NKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFI 1707
             K ADEL   M+KKF   +  VW      L   K +    +A++ RA   L  H     +
Sbjct: 1610 LKEADELFEAMLKKFGAKAPSVWTNYAHFLHVTKNEPARARALLPRATQQLDSHNGQNIV 1669

Query: 1708 SQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLF 1761
            S+ A LEF+  NG  +RGR+MFEG+L+ +PK+ DLW+  LD EI +     D   +R +F
Sbjct: 1670 SRFAALEFRSPNGEPERGRTMFEGLLAAWPKKGDLWNQLLDLEIGIASSSADHTAVRDVF 1729

Query: 1762 ERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            ER   +  L P++ +  F+++  +E+ +  + + + V  KA E+ 
Sbjct: 1730 ERRTRVKGLKPQQAEKWFRRWAAWEEKLDAKGK-DKVMAKAQEWA 1773



 Score =  187 bits (476), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 175/649 (26%), Positives = 291/649 (44%), Gaps = 47/649 (7%)

Query: 58  LPTIFHVGQLVSC-IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
           L T+F VGQ V   +V  +D      G+RKI LSLR S    GL  + V     + A V 
Sbjct: 207 LKTMFKVGQYVRAYVVSTMDGAAGGKGRRKIELSLRPSEANTGLEKDDVVPNSTVMASVV 266

Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSS 173
           S+E+ G ++  G+P+  GFLP   +  +  ID   ++PG +    V   + + K+  LS 
Sbjct: 267 SVEERGCVMDLGIPNLNGFLPNGEI--DPLIDQERLQPGAVFLCQVTGKN-SNKIAQLSL 323

Query: 174 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
             D +           +I+  +PG +V+  V      G+    +     T D+ H     
Sbjct: 324 KQDKLGSTKAFPADATTINTFLPGTIVNILVSDNEGRGLAGKIMGAVDATADLIHSGIGP 383

Query: 234 PTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL----------HNRAPPSHVK 281
              + K  Y    KV ARI+   PT++   +G++L P+++            R P   + 
Sbjct: 384 NDDDLKAKYKIGSKVKARIICNFPTAKDPKLGISLLPHIMSLTQKQQDDDEKRRPIEVMP 443

Query: 282 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCV 338
           +    ++  V  V+  +GL +D     +    +V IS V + +V  L +    +K G+  
Sbjct: 444 ISSFVEKCTVRHVEPDIGLFVDTGIAGLG--GFVHISRVKDGKVDALYESSGPFKIGTVH 501

Query: 339 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-----DSFGAIVQF 393
           R R++G+  ++GL +     S  E       D+  G V+ G++  +        G I++ 
Sbjct: 502 RGRVVGYNEMDGLFSISFAKSLLEQQYIRLEDIPLGSVINGEIEKLVIKEQGVTGLIIKI 561

Query: 394 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAI 451
             G+       HMS+  +  P KKF+ G ++  RVL V    +++ +T KKTLV S+   
Sbjct: 562 ADGISGFVTETHMSDIRLQHPEKKFREGMKVKARVLSVNFAKRQMRLTLKKTLVNSEAPT 621

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
           + SY + +  + T G I K++++G  ++FY  ++GF P SE+      +P   +  GQVV
Sbjct: 622 IKSYDDVSIGMQTLGTIVKVQQNGAHIQFYGKLRGFLPVSEMSEAYIRDPMEHFRAGQVV 681

Query: 512 KCRIMSSIPASRRINLSF-------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 564
               +   P +RR  +S        + K T +     +KLG +VS  V   T + + V +
Sbjct: 682 SVHALEVDPEARRFIVSCKDPGAFGLEKQTALKN---LKLGDIVSAKVTQKTEDQIFVEL 738

Query: 565 IAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLI 621
           +     K  +P  HL D            I  G     L+VL+ NE+   + L+ K SL+
Sbjct: 739 VDSQL-KAILPVGHLTDKSTSKNQYAWKRISAGQTLSNLMVLEKNENRRAITLTQKPSLV 797

Query: 622 NSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
            ++Q   L          +VV G+V NI  T  FV+F G L    PR +
Sbjct: 798 KASQDNNLLKSFHDAKVGAVVQGFVRNITVTAVFVQFAGSLNALLPRGR 846



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 129/636 (20%), Positives = 251/636 (39%), Gaps = 108/636 (16%)

Query: 242  YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 301
            + +  KV AR+L V+   R + LTL   L+++ AP         YD   +    + LG +
Sbjct: 586  FREGMKVKARVLSVNFAKRQMRLTLKKTLVNSEAPTIKS-----YDDVSIGM--QTLGTI 638

Query: 302  LDIPSTPVSTPAY------VTISDVAEEEVRKLEKKYKEGSCVRVRIL-----GFRHL-- 348
            + +         Y      + +S+++E  +R   + ++ G  V V  L       R +  
Sbjct: 639  VKVQQNGAHIQFYGKLRGFLPVSEMSEAYIRDPMEHFRAGQVVSVHALEVDPEARRFIVS 698

Query: 349  --EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPH 405
              +  A G+ K +A + L       K G +V  KV         V+     +KA+ P+ H
Sbjct: 699  CKDPGAFGLEKQTALKNL-------KLGDIVSAKVTQKTEDQIFVELVDSQLKAILPVGH 751

Query: 406  MSEFEIVK---PGKKFKVGAELV-FRVLGVKSKR--ITVTHKKTLVKSKL--AILSSYAE 457
            +++    K     K+   G  L    VL     R  IT+T K +LVK+     +L S+ +
Sbjct: 752  LTDKSTSKNQYAWKRISAGQTLSNLMVLEKNENRRAITLTQKPSLVKASQDNNLLKSFHD 811

Query: 458  ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 517
            A    +  G++  I     FV+F   +    PR  L  +   +P       + ++ RI+S
Sbjct: 812  AKVGAVVQGFVRNITVTAVFVQFAGSLNALLPRGRLSAEAQSQPDFGLRKFESIEVRIIS 871

Query: 518  SIPASRRINLSFMMKP------------TRV-SEDDLVKLGSLVSGVVDVVTPNAVVVYV 564
            +IP  +RI ++    P            T+  + +D +  GS     +  +    + V +
Sbjct: 872  TIPDLKRILVAPADSPVAEPVSSKPKTSTKAPAPEDGLAFGSTAQARITSIKDTQLNVQL 931

Query: 565  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD----------QLLVLDNESSNLLL 614
            +     +G I    + D  E       ++ P    D          ++L + +   +  L
Sbjct: 932  VDSEI-QGRIDVSQIFDKWE------DIVDPKDPLDKFNKKQILRVKILGVHDAKDHRFL 984

Query: 615  SAKYSLINSAQQL---PSDASHIHPNSVV---------H-GYVCNIIETGCFVRFLGRLT 661
               +   +S  +L   PSD S+  PN +          H  +V N+     +V     + 
Sbjct: 985  PFSHRSAHSVMELTTKPSDLSNDAPNPISLDDLKVGDNHIAFVNNVTSQYLWVNLSPNVR 1044

Query: 662  GFAPRSKAVDGQR--ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASFM 718
            G     +A D      DL   + VG ++++ +  V+++  R+ LS +    S +   + +
Sbjct: 1045 GRISIMEASDDLSLLNDLEANFPVGSALKARVTSVDAKNNRLDLSARSPNASEAITWASL 1104

Query: 719  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 778
            +++ +L  KI     +K N  ++       +   + G VH            +  D YG 
Sbjct: 1105 KQNMILPGKI-----TKVNERQVL----VKLSETVSGPVH----------LPDMVDDYGS 1145

Query: 779  ITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
            +   +      + G +++ +I+DV  + + + LS++
Sbjct: 1146 VDTLKY-----KKGDIVRVSIVDVDPSNKRIRLSMR 1176



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 145/327 (44%), Gaps = 37/327 (11%)

Query: 152  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 211
            G  L+  V S+D     + LS+     S+ +T     +  ++++PG     ++  + E  
Sbjct: 1069 GSALKARVTSVDAKNNRLDLSARSPNASEAIT--WASLKQNMILPG-----KITKVNERQ 1121

Query: 212  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 271
            V++      +G V +  + + + + +    Y +   V   I+ VDP+++ + L++ P  +
Sbjct: 1122 VLVKLSETVSGPVHLPDMVDDYGSVDTLK-YKKGDIVRVSIVDVDPSNKRIRLSMRPSRI 1180

Query: 272  HNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
             +   P         + +  GDI         D+GL +LL    T     A+V IS++++
Sbjct: 1181 MSSTLPVADKEISKITQLATGDIVRGFVKNVADKGLFVLLGGQVT-----AFVKISNLSD 1235

Query: 323  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGM 375
              +++ +  ++    V+ RI+        AT  L+ S    +V         ++D+K G 
Sbjct: 1236 RFLKEWKDSFQIDQLVKGRIISL----DAATSQLELSLKSSVVDEDYTPPLGYNDIKEGQ 1291

Query: 376  VVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GV 431
            +V G V  V+ FGA  +V     V  LC    M++  +    K +K G ++  RVL   V
Sbjct: 1292 IVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNAVKDATKLYKEGDKVKARVLEVDV 1351

Query: 432  KSKRITVTHKKTLVKSKLAILSSYAEA 458
              +RI+   K +  + +   ++S +EA
Sbjct: 1352 SKRRISFGLKPSFFEDEDTDMASDSEA 1378



 Score = 48.1 bits (113), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 14/222 (6%)

Query: 331  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD--------VKPGMVVKGKVI 382
            KYK+G  VRV I+            ++ S         +D        +  G +V+G V 
Sbjct: 1150 KYKKGDIVRVSIVDVDPSNKRIRLSMRPSRIMSSTLPVADKEISKITQLATGDIVRGFVK 1209

Query: 383  AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSKRITVTH 440
             V   G  V   G V A   + ++S+  + +    F++   +  R+  L   + ++ ++ 
Sbjct: 1210 NVADKGLFVLLGGQVTAFVKISNLSDRFLKEWKDSFQIDQLVKGRIISLDAATSQLELSL 1269

Query: 441  KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQGFAPRSELGLDPG 498
            K ++V         Y +  +  I  G + K+E+ G F+   N   V G   RS++  +  
Sbjct: 1270 KSSVVDEDYTPPLGYNDIKEGQIVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNAV 1329

Query: 499  CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
             + + +Y  G  VK R++    + RRI  SF +KP+   ++D
Sbjct: 1330 KDATKLYKEGDKVKARVLEVDVSKRRI--SFGLKPSFFEDED 1369


>gi|397620972|gb|EJK66030.1| hypothetical protein THAOC_13070 [Thalassiosira oceanica]
          Length = 2366

 Score =  194 bits (493), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 172/289 (59%), Gaps = 24/289 (8%)

Query: 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1601
            ++P    +FERL+ SSPN S +WIKYMA+ LS+AD + AR++A RA   I  R+E EKLN
Sbjct: 2079 ESPENAADFERLLASSPNDSEIWIKYMAWHLSLADTDSARNVANRAFDRIEFRQEGEKLN 2138

Query: 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL--------------GLYER 1647
            +W A   LE + G   ++++     RA Q  +PK+V+L +               G  + 
Sbjct: 2139 VWTALLTLELKCGT--DKSLNDAIDRASQQNNPKQVYLRVCEQLDKEVDAAASVGGSTDL 2196

Query: 1648 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKF 1706
                K ADE+  K  KKFK    VW+  +Q LLK  + E   ++++R+L SLP++KHI+ 
Sbjct: 2197 DTATKRADEMFAKACKKFKSKKSVWIAHLQYLLKGSRHEEAHSLLKRSLQSLPQYKHIEV 2256

Query: 1707 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766
            +S+ A +EF++G A+RGR++F+ +L + PKR DL  +Y+D+E++ GD+D  R LF   ++
Sbjct: 2257 MSKFAQIEFEHGSAERGRTIFDALLGKNPKRMDLLFVYIDKEVKCGDLDKARALFSSVVN 2316

Query: 1767 LSLPPKKMKF-------LFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1808
             S   +K KF       LFKK+   E+  G+E+  E VK +A  +V ++
Sbjct: 2317 PSSSDRKFKFSDKQMKSLFKKWFRMEEEHGDEDSQERVKDEARAFVSNS 2365



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 11/108 (10%)

Query: 417  KFKVGAELVFRVL--GVKSKRITVTHKKTLVKS--KLAILSSYAEATDRLITHGWITKIE 472
            K++VG  +  R L   V+ +   +T KKTL+      +++S Y EA    I  G+I+K++
Sbjct: 981  KYRVGQGVDVRCLTVDVRGRTAVLTAKKTLIAEGEDGSVISDYGEAEPGKIAAGFISKVD 1040

Query: 473  KHGCFVRFYNGVQGFAPR----SELGLDPGCEPSSMYHVGQVVKCRIM 516
              G  V FYN V G        SELG++   +P + Y VG VV  R++
Sbjct: 1041 GTGLTVTFYNNVHGRVSSRCLASELGVE---DPRTNYTVGDVVAARVV 1085



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 17/129 (13%)

Query: 194 LVPGMMVSTRVQSILENGVMLSF-LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN--- 249
           L PGM+    V++  +NG+ +SF    + G +D  HL         K    + ++     
Sbjct: 689 LQPGMLTEVSVEAYAKNGLCVSFHRGVYRGAIDEDHLGGHRGCEEGKGGRERRRRTRTRA 748

Query: 250 -----------ARILFVDPTSRAVGLTLNPYLLHNRAPPSH--VKVGDIYDQSKVVRVDR 296
                       RI+ VD  ++ V  ++ P++L  R   +   + VG I + ++V+R+D 
Sbjct: 749 CGGRACSADGIPRIVAVDTATKVVRFSIQPHILALRGEFAAFPLPVGTIVEGARVIRIDA 808

Query: 297 GLGLLLDIP 305
           G+G LL +P
Sbjct: 809 GIGALLALP 817


>gi|403220620|dbj|BAM38753.1| pre-rRNA processing protein [Theileria orientalis strain Shintoku]
          Length = 371

 Score =  194 bits (493), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/296 (39%), Positives = 175/296 (59%), Gaps = 23/296 (7%)

Query: 1526 EREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1582
            E E +IR  E+R+ + +    P    ++ERLV ++ +SS VWI YM+F L+  D+E AR 
Sbjct: 76   ENESKIREQEDRIADNEWMNNPSSVLDYERLVVTNSSSSVVWIAYMSFYLNSGDLEMARK 135

Query: 1583 IAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL 1642
               R L+ I+ RE  EKLN+WVAY N+E  YG    + V++VF +A+QY D K ++L ++
Sbjct: 136  TVNRGLKAIDFREMGEKLNLWVAYLNMECIYG----DKVMEVFNKAVQYNDSKTIYLKMI 191

Query: 1643 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPR 1700
            G+     Q   A E+  K IKKF  S K+WL  ++   +  +  E  + + +  +  +P+
Sbjct: 192  GILVSNNQFDKAREICEKGIKKFYTSKKIWLAYLKLFYEHMKDFEAGRQLHKTCISRIPK 251

Query: 1701 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL---- 1756
            HK +   S TA+LE+K+G    G+  FE IL + PKR D+W+ YL   I+L   D     
Sbjct: 252  HKRLFITSSTALLEYKHG----GKMYFENILLDNPKRMDIWNQYLTAHIKLQISDTVTPK 307

Query: 1757 ------IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
                  +R LFERAISL L PKKMK +F K+LE+E + G E+  + V+ KA++YVE
Sbjct: 308  SERLKNVRNLFERAISLDLKPKKMKIIFAKWLEFECTHGNEKSKQMVQNKALKYVE 363


>gi|261326050|emb|CBH08876.1| rRNA biogenesis protein, putative [Trypanosoma brucei gambiense
            DAL972]
          Length = 679

 Score =  193 bits (491), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 181/307 (58%), Gaps = 12/307 (3%)

Query: 1513 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1572
            E  N +  K  K + E+ I A E R +E   P +P+EF+RL+ +SPN+S++W+++M   +
Sbjct: 324  ENTNVNRSKIRKRKLEETIDAYE-RSMETAVPSSPEEFQRLLLASPNNSYLWVQWMTHHV 382

Query: 1573 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1632
            S+   E+AR +AE+AL TI +RE  E+LN+WVAY NLEN +G    E++  VF+RAL++ 
Sbjct: 383  SLQQFEEARLVAEKALTTIGVRETQERLNVWVAYMNLENLHGT--AESLASVFKRALRHA 440

Query: 1633 -DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAV 1690
             D   V+  L  ++  T +      L   M+ K +   +VW R    L+   +++ ++ V
Sbjct: 441  LDELVVYERLADIFSATRKFNQLLSLCRAMVSKNRKVPRVWERLGTVLIDHNKRDQLKRV 500

Query: 1691 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1750
            ++    +L R ++   +    + E++NG  + GR++FEG+L   PK++D+WS+YLDQE+ 
Sbjct: 501  LKDMSDALKRDEYALVVVHLGVHEYRNGSVENGRALFEGLLLRMPKKSDVWSVYLDQELG 560

Query: 1751 L-------GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803
            L            +RGLFERA+S S   K M+ +  +++ +E++ G    +E VK +A  
Sbjct: 561  LLARRSEVASAVFVRGLFERAVSTSFSAKVMQQVLTRFMSFERAHGTPADVEKVKARARS 620

Query: 1804 YVESTLA 1810
            YVE+ ++
Sbjct: 621  YVEAKIS 627


>gi|116207588|ref|XP_001229603.1| hypothetical protein CHGG_03087 [Chaetomium globosum CBS 148.51]
 gi|88183684|gb|EAQ91152.1| hypothetical protein CHGG_03087 [Chaetomium globosum CBS 148.51]
          Length = 1766

 Score =  193 bits (491), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 261/1130 (23%), Positives = 493/1130 (43%), Gaps = 188/1130 (16%)

Query: 363  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKA--LCPLPHMSEFEIVKPGKKF 418
            G V  H DV   +V  G     D    + Q+  G  +KA  +C  P+          K  
Sbjct: 368  GKVMGHLDVTADLVHSG--AGPDGVDIVAQYKVGSRIKARIICTFPN---------AKLP 416

Query: 419  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 478
            K+G  ++  +L +K K      ++ L    LA  ++  E T + +  G        G +V
Sbjct: 417  KLGISVLPHILSLKPKTANKDSQEILPTRILAHSATVDECTVQRVEPGI-------GLYV 469

Query: 479  RF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
                 G+ GF   S +    +D   E S  Y VG V   R++          LSF  K  
Sbjct: 470  DVGVEGIPGFVHISRVKDGKVDSLFESSGPYKVGSVHPGRVVGYNNFDGMFLLSFEKK-- 527

Query: 535  RVSEDDLVKLGSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPTEHLAD-HLE 584
             V E   +++  +  G V       +V+           IA G S G +P  HL+D HL+
Sbjct: 528  -VLEQPFLRIEDIPVGAVVPGVVEKLVINQDGLGGLIVNIADGIS-GLVPEMHLSDVHLQ 585

Query: 585  HATVMKSVIKPGYEFDQLLVLDNESSN-LLLSAKYSLINSAQQLPSDA-SHIHPNSVVHG 642
            H    +   + G +    ++  N + + L L+ K +L+NS + LP  +   +       G
Sbjct: 586  HP---EKKFREGMKVKARVLSTNPARHQLRLTLKKTLVNS-EALPIKSYDELAVGLQAPG 641

Query: 643  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 702
             + N+++ G  V+F G+L GF P S        ++S+ Y                     
Sbjct: 642  TIVNVLQHGAIVQFYGQLRGFLPVS--------EMSEAYI-------------------- 673

Query: 703  LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 762
                         S  +EHF + + +A+ +                IG ++  KV +  +
Sbjct: 674  -------------SDPKEHFRVGQTLALKK--------------LQIGDLVSAKVTQKTE 706

Query: 763  FGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLS 812
              + V   ++S        H    +  ++ S ++            +L+  +A R + LS
Sbjct: 707  DDIFVELTDNSLKAVLPVAHLTDKSVSKTQSALKKIHVNQTLSELVVLEKNEARRSITLS 766

Query: 813  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHS 871
             K   +   +E      A   +   E +   G  + + A    V+    L   LP+    
Sbjct: 767  HKPSLVQASKEGKLLASADDARLGNEVA---GFVRNITATAAFVQFAGKLTALLPK---- 819

Query: 872  IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 931
                S    + Q  P       QS+   + ++      GRL++ + ++++ E     +  
Sbjct: 820  ----SKLPRDAQDKPSFGMYKSQSLTVKITSI--DKDLGRLVVAIPSVADDEAKKVVKPT 873

Query: 932  KKS--SYD----------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV- 978
            +K+  S D          +G L +A +   K  +L ++      GRI +++V D   ++ 
Sbjct: 874  EKAINSLDDSITSADDLAIGKLTKARVKSAKETQLNVQIADNIQGRIDVSQVFDKWEDIP 933

Query: 979  -VENLFSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKL 1029
              +     FK  + +  R++    A++++  P   +S   + ELS KPS L    +   L
Sbjct: 934  DAKRPLKRFKPNEILEVRVLGVHDARNHRFLPITHRSSHSVLELSTKPSDLKADTLPESL 993

Query: 1030 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1089
              ++  + +G     +V  V + +  + +S +++ ++  ++++ + ++L   ++ F +G 
Sbjct: 994  SLDK--IEVGSTHVAFVNNVASNYLWVNLSPNVRGRINAMEASDDLAKLANLEKSFPVGS 1051

Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1149
            A+   VL+++KEK+ + L  R      S +   +S D +Q    +G ++  +++K+    
Sbjct: 1052 ALQVRVLAVDKEKERVDLSAR-----TSGEAAQLSWDKIQ----QGLVLPAKVTKV--ND 1100

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
              ++V++   + G VH  +L +               +PLS +   + V+  V+E+ ++ 
Sbjct: 1101 RQVIVKLSELVAGPVHLADLADDYDD----------ANPLS-HSRNEIVRVAVVEVDKSN 1149

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
            +    V LS+R S           L++ +    K + K   L    I++G+V+NV+ KG 
Sbjct: 1150 K---RVRLSMRPS---------KVLNSSLPVKDKEVTKNTKLEVGDIIRGFVRNVSDKGL 1197

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ L   L A V + NLSD Y++  ++ + + +LV GR++SV     R+E+ LK S    
Sbjct: 1198 FVSLGGDLVALVKIKNLSDSYLKDWKEHYQVDQLVKGRIISVA--EGRIELNLKPS-VVD 1254

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETI 1388
                 +  +++L  G  + G++++VE +G FI I  + NL GLCH SE+++ +V +  T+
Sbjct: 1255 KDYVPLTTIADLKEGQTITGKVRKVEEFGAFIEISGSMNLSGLCHRSEMADRNVKDARTL 1314

Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEESDEAI 1437
            Y  G++VK ++LKVD EK+RI+LG+K SYFK+ +AD++ + SE+E   A+
Sbjct: 1315 YNEGDRVKARVLKVDLEKKRINLGLKPSYFKDGEADDMDVDSEDEDAGAV 1364



 Score =  190 bits (482), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 196/745 (26%), Positives = 328/745 (44%), Gaps = 79/745 (10%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL----------- 57
           G  + G V  +N  D+VI LP  L G        +P+     E+ E              
Sbjct: 145 GSLVLGTVCAINALDIVIALPNNLVGHVPITSISEPLTQRLEESAEKEEDDDEPEDEGVD 204

Query: 58  ---LPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 113
              L ++F +GQ V   V   LD+      KR I L+L  +    G+S + V E   L A
Sbjct: 205 DVDLKSLFQIGQYVRAYVTSTLDESAPGKSKRHIGLALDPAHSNTGISEQDVVENCTLMA 264

Query: 114 YVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVY 170
            V S+EDHG+++   +      GFLPR  L ++   + ++PG +L  +V +   + KVV 
Sbjct: 265 AVASVEDHGFVMDISIAESKLRGFLPRKQLDKSIPEESLQPGSVLLCIVANKVASGKVVQ 324

Query: 171 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
           LS+  D +    +   +  +I   +PG      V  + ++GV+   + +   T D+ H  
Sbjct: 325 LSTLSDRIGNPKSSPSEATTIGSFLPGTAADVLVSEVSQHGVVGKVMGHLDVTADLVHSG 384

Query: 231 NTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRAPPSHVKVGDIY-- 286
                 +    Y    ++ ARI+   P ++   +G+++ P++L  +   ++    +I   
Sbjct: 385 AGPDGVDIVAQYKVGSRIKARIICTFPNAKLPKLGISVLPHILSLKPKTANKDSQEILPT 444

Query: 287 ---------DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKE 334
                    D+  V RV+ G+GL +D+    +  P +V IS V + +V  L      YK 
Sbjct: 445 RILAHSATVDECTVQRVEPGIGLYVDVGVEGI--PGFVHISRVKDGKVDSLFESSGPYKV 502

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK----VIAVDSFGA- 389
           GS    R++G+ + +G+     +    E       D+  G VV G     VI  D  G  
Sbjct: 503 GSVHPGRVVGYNNFDGMFLLSFEKKVLEQPFLRIEDIPVGAVVPGVVEKLVINQDGLGGL 562

Query: 390 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS 447
           IV    G+  L P  H+S+  +  P KKF+ G ++  RVL     R  + +T KKTLV S
Sbjct: 563 IVNIADGISGLVPEMHLSDVHLQHPEKKFREGMKVKARVLSTNPARHQLRLTLKKTLVNS 622

Query: 448 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 507
           +   + SY E    L   G I  + +HG  V+FY  ++GF P SE+      +P   + V
Sbjct: 623 EALPIKSYDELAVGLQAPGTIVNVLQHGAIVQFYGQLRGFLPVSEMSEAYISDPKEHFRV 682

Query: 508 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAK 567
           GQ +  + +                          ++G LVS  V   T + + V +   
Sbjct: 683 GQTLALKKL--------------------------QIGDLVSAKVTQKTEDDIFVELTDN 716

Query: 568 GYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLLSAKYSLIN 622
              K  +P  HL D  +  +  +S +K         +L+VL+ NE+  ++ LS K SL+ 
Sbjct: 717 SL-KAVLPVAHLTD--KSVSKTQSALKKIHVNQTLSELVVLEKNEARRSITLSHKPSLVQ 773

Query: 623 SAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 680
           ++++  L + A      + V G+V NI  T  FV+F G+LT   P+SK     +   S  
Sbjct: 774 ASKEGKLLASADDARLGNEVAGFVRNITATAAFVQFAGKLTALLPKSKLPRDAQDKPSFG 833

Query: 681 YYVGQSVRSNILDVNSETGRITLSL 705
            Y  QS+   I  ++ + GR+ +++
Sbjct: 834 MYKSQSLTVKITSIDKDLGRLVVAI 858



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 79/114 (69%), Gaps = 2/114 (1%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L+ + P+T  ++ERL+   P+SS +WI YMA  + + D+  AR +AERA++TINI+EE E
Sbjct: 1433 LDINGPQTSSDYERLLLGQPDSSELWIAYMASQMQINDLASARQVAERAIKTINIKEETE 1492

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1652
            KLN+W+AY NLE  YG   +E V +VF+RA  Y D ++VH  L  +Y ++ ++K
Sbjct: 1493 KLNVWIAYLNLEVAYGT--DETVEEVFKRACTYNDDQEVHERLASIYIQSGKHK 1544



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 67/110 (60%), Gaps = 7/110 (6%)

Query: 1706 FISQTAILEFKNGVADR--GRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRG 1759
             + + A LEF++   DR  GR++FE +L+ YP++ DLW+  LD E+ +    GDV ++R 
Sbjct: 1641 LLPKFAALEFRSPHGDREQGRTLFENLLATYPRKFDLWNQLLDLEVSVPVEDGDVAVVRD 1700

Query: 1760 LFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1808
            LF+R   +  L P++ K  F+++ ++E+  G+ +  E V  +A+E+  + 
Sbjct: 1701 LFDRGSKVKGLKPRQAKAWFRRWAKWEEERGDAKSRERVSARAVEWARAA 1750



 Score = 45.8 bits (107), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 122/575 (21%), Positives = 213/575 (37%), Gaps = 121/575 (21%)

Query: 290  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 349
            K+  +D+ LG L+            V I  VA++E +K+ K  ++   +          +
Sbjct: 843  KITSIDKDLGRLV------------VAIPSVADDEAKKVVKPTEK--AINSLDDSITSAD 888

Query: 350  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
             LA G L  +  +    T  +V+    ++G++     F      P               
Sbjct: 889  DLAIGKLTKARVKSAKETQLNVQIADNIQGRIDVSQVFDKWEDIP--------------- 933

Query: 410  EIVKPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITH 465
            +  +P K+FK    L  RVLGV   R    + +TH+ +    +L+   S  +A D L   
Sbjct: 934  DAKRPLKRFKPNEILEVRVLGVHDARNHRFLPITHRSSHSVLELSTKPSDLKA-DTLPES 992

Query: 466  GWITKIEKHGCFVRFYNGV-----------------QGFAPRSELGLDPGCEPSSMYHVG 508
              + KIE     V F N V                        +L      E S  + VG
Sbjct: 993  LSLDKIEVGSTHVAFVNNVASNYLWVNLSPNVRGRINAMEASDDLAKLANLEKS--FPVG 1050

Query: 509  QVVKCRIMSSIPASRRINLSFMMKPTRVSED------DLVKLGSLVSGVVDVVTPNAVVV 562
              ++ R+++      R++LS      R S +      D ++ G ++   V  V    V+V
Sbjct: 1051 SALQVRVLAVDKEKERVDLS-----ARTSGEAAQLSWDKIQQGLVLPAKVTKVNDRQVIV 1105

Query: 563  ----YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSA 616
                 V    +          A+ L H+           E  ++ V++ + SN  + LS 
Sbjct: 1106 KLSELVAGPVHLADLADDYDDANPLSHSR---------NEIVRVAVVEVDKSNKRVRLSM 1156

Query: 617  KYS-LINSAQQLPSDASHIHPNS------VVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
            + S ++NS+  LP     +  N+      ++ G+V N+ + G FV   G L         
Sbjct: 1157 RPSKVLNSS--LPVKDKEVTKNTKLEVGDIIRGFVRNVSDKGLFVSLGGDLVALVKIKNL 1214

Query: 670  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 729
             D    D  + Y V Q V+  I+ V    GRI L+LK         S + + ++    IA
Sbjct: 1215 SDSYLKDWKEHYQVDQLVKGRIISVAE--GRIELNLK--------PSVVDKDYVPLTTIA 1264

Query: 730  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 789
             L+                 G  I GKV +  +FG  +      ++ G     ++A   V
Sbjct: 1265 DLKE----------------GQTITGKVRKVEEFGAFIEISGSMNLSGLCHRSEMADRNV 1308

Query: 790  ES-------GSVIQAAILDVAKAERLVDLSLKTVF 817
            +        G  ++A +L V   ++ ++L LK  +
Sbjct: 1309 KDARTLYNEGDRVKARVLKVDLEKKRINLGLKPSY 1343


>gi|156086054|ref|XP_001610436.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154797689|gb|EDO06868.1| conserved hypothetical protein [Babesia bovis]
          Length = 383

 Score =  192 bits (489), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 177/299 (59%), Gaps = 19/299 (6%)

Query: 1527 REQEIRAAEERLLEKDAP---RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1583
            +E E+RAAE RLLE ++     T  +FE+ V +  NS+ +WI+YMAF L    +E AR +
Sbjct: 85   KETELRAAERRLLENESSGSVETVFDFEKRVATGGNSASLWIEYMAFHLRNGSLEGARQV 144

Query: 1584 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1643
              R L+ I+ R  +E+L +WVA  N+E  YG+  +E    VFQ +L++ DPK ++L ++ 
Sbjct: 145  VRRGLERIDFRAISERLTLWVANINMECLYGDRVKE----VFQESLRFNDPKTMYLKMIS 200

Query: 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRH 1701
            ++ + ++   A E+  + IKK   S K W   ++ L +  +  E  + V  R LL +P H
Sbjct: 201  IFVKNDRLSDAIEVCERGIKKLGKSKKFWQAYLRLLFEHVKDFEEARKVYNRCLLRIPDH 260

Query: 1702 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI----------RL 1751
            K +  ++ TA+LEFK G A+RG+ MFE +L + P+R D+W  Y+   I          R 
Sbjct: 261  KKVYMMTSTALLEFKFGSAERGQMMFENLLLDNPRRMDIWMQYICAYIKFQLTSPGIKRS 320

Query: 1752 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
              +  IR LF R I+L L PKKMK +++K++E+E + G+ +    V+QKA+EYVES  A
Sbjct: 321  DGLRSIRNLFLRIITLDLKPKKMKVIYQKWMEFECNHGDSKSKSLVQQKALEYVESVEA 379


>gi|384487023|gb|EIE79203.1| hypothetical protein RO3G_03908 [Rhizopus delemar RA 99-880]
          Length = 861

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 155/548 (28%), Positives = 273/548 (49%), Gaps = 44/548 (8%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN------EIEANE 54
           + ++ G  L G ++ +NE +L + LP  L G   +   +DAL  I+        + E ++
Sbjct: 107 KKLTVGTCLLGCISRINELELFVSLPHQLVGVIPITEVSDALSDIIQRIADEDEDEEESK 166

Query: 55  DNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 114
              L  +FHVGQ + C ++ L    +E  K+ I LSL+ + + + +    V  G+ L A 
Sbjct: 167 MPKLNDLFHVGQWIRCKIISLPA-VEEKSKKPIELSLKPNTVNEDMVKVDVTPGVTLGAS 225

Query: 115 VKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVV 169
           VKS+EDHGY+L  G+   TGFLP+          N   ++  G  ++ +V    +  + V
Sbjct: 226 VKSVEDHGYVLDLGVKDLTGFLPKKEAKAYIEKYNRDEELAVGQYVECLVEK--KNNRTV 283

Query: 170 YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 229
           +++ D   ++  V +D     I  ++PG  VS  V+++  NG+ L  +  ++ T+D  H+
Sbjct: 284 HVTIDRSKIASSVVEDPFS-RITSILPGQRVSGVVEAVQANGLALKMMGLYSSTIDASHI 342

Query: 230 QNTFPTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYLLHNRAP--PSHVK---- 281
            +     + ++ +   +KV  R LF  ++   +A+G ++  + L    P   + VK    
Sbjct: 343 PSNM---DIESSFKLGQKVVFRTLFTILNTEEKAIGGSILAHALDLDVPTLANGVKSDKF 399

Query: 282 VGDIY------DQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--- 331
           VGD++      + +KV RV +  + + LD      S   YV IS +A+E V  L      
Sbjct: 400 VGDVFPAGSFLENTKVYRVSNSSVWVTLDGLD---SITGYVHISRLADERVPSLSATAGD 456

Query: 332 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 391
           Y+ G+  R R+L +  ++ +    L+ S         +D++ G +V+G V  +   G I+
Sbjct: 457 YRIGTTHRARVLSYNPVDAMLVLTLQPSVLAEKYLRVTDIEVGSMVEGVVEKIIPAGVIL 516

Query: 392 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKL 449
           +    + AL P  H+++ ++  P  KFKVG +   RVL V  +R  I +T KK+L+ S+ 
Sbjct: 517 KLSKSISALVPAAHLADVKLSHPEYKFKVGKKFQCRVLKVDGERQKIILTLKKSLINSEF 576

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
            I  + A+     I+HG IT I+ +GC + +YNGV  F P  E+         +++HVGQ
Sbjct: 577 PIFQNMADCHVGDISHGVITAIKNNGCIIGYYNGVSAFVPGGEMTEAHVPNLGTVFHVGQ 636

Query: 510 VVKCRIMS 517
            VK  ++S
Sbjct: 637 TVKTTVLS 644



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 108/212 (50%), Gaps = 25/212 (11%)

Query: 505 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAV 560
           Y +G   + R++S  P    + L+  ++P+ ++E  L    +++GS+V GVV+ + P  V
Sbjct: 457 YRIGTTHRARVLSYNPVDAMLVLT--LQPSVLAEKYLRVTDIEVGSMVEGVVEKIIPAGV 514

Query: 561 VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-------QLLVLDNESSNL 612
           ++  ++K  S   +P  HLAD  L H         P Y+F        ++L +D E   +
Sbjct: 515 ILK-LSKSIS-ALVPAAHLADVKLSH---------PEYKFKVGKKFQCRVLKVDGERQKI 563

Query: 613 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 672
           +L+ K SLINS   +  + +  H   + HG +  I   GC + +   ++ F P  +  + 
Sbjct: 564 ILTLKKSLINSEFPIFQNMADCHVGDISHGVITAIKNNGCIIGYYNGVSAFVPGGEMTEA 623

Query: 673 QRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
              +L   ++VGQ+V++ +L V++E  ++ +S
Sbjct: 624 HVPNLGTVFHVGQTVKTTVLSVDAEKNKMIVS 655



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 4/164 (2%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            ++ D+    +V+G V+ +   G  + LS+ + A V  ++L+D  +  PE +F +GK    
Sbjct: 492  RVTDIEVGSMVEGVVEKIIPAGVILKLSKSISALVPAAHLADVKLSHPEYKFKVGKKFQC 551

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
            RVL V+   +++ +TLK   S   S+  I  N+++ HVGDI  G I  +++ G  I   N
Sbjct: 552  RVLKVDGERQKIILTLK--KSLINSEFPIFQNMADCHVGDISHGVITAIKNNGCIIGYYN 609

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
              +       E++E HV N+ T++  G+ VK  +L VD EK ++
Sbjct: 610  -GVSAFVPGGEMTEAHVPNLGTVFHVGQTVKTTVLSVDAEKNKM 652



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 49/81 (60%)

Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
            L +  D+   +  QGY+ N+T  G F+ L++ + A+V + NL+D +V+  +  + +G  V
Sbjct: 710  LSEFSDVRRGVCYQGYISNITDAGVFLQLNKTISARVKIGNLNDEFVKDWKSLYQVGNTV 769

Query: 1305 AGRVLSVEPLSKRVEVTLKTS 1325
              R++ ++  SKR+E +LK S
Sbjct: 770  QTRIIHIDRESKRLEASLKKS 790



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 86/185 (46%), Gaps = 22/185 (11%)

Query: 964  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1023
            G +HI+ + D++   +     +++IG T  AR+++  N  D     +  L+++PS+L   
Sbjct: 435  GYVHISRLADERVPSLSATAGDYRIGTTHRARVLS-YNPVDA----MLVLTLQPSVL--- 486

Query: 1024 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1083
               ++      D+ +G  V G V K+     +L +S+ + A   +  +     +L   + 
Sbjct: 487  ---AEKYLRVTDIEVGSMVEGVVEKIIPAGVILKLSKSISA--LVPAAHLADVKLSHPEY 541

Query: 1084 RFHIGKAVTGHVLSINKEKKLLRLVLR--------PFQDGISDKTV-DISNDNMQTFIHE 1134
            +F +GK     VL ++ E++ + L L+        P    ++D  V DIS+  +    + 
Sbjct: 542  KFKVGKKFQCRVLKVDGERQKIILTLKKSLINSEFPIFQNMADCHVGDISHGVITAIKNN 601

Query: 1135 GDIVG 1139
            G I+G
Sbjct: 602  GCIIG 606


>gi|71403744|ref|XP_804641.1| rRNA biogenesis protein [Trypanosoma cruzi strain CL Brener]
 gi|70867719|gb|EAN82790.1| rRNA biogenesis protein, putative [Trypanosoma cruzi]
          Length = 672

 Score =  192 bits (488), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 189/330 (57%), Gaps = 19/330 (5%)

Query: 1489 DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD 1548
            + + D ++ I  N G TD       KN    +K  K + E+ I A E R +    P +PD
Sbjct: 313  ETESDENDSIDDNDGTTD-------KNGGGEQKLRKRKIEEAIDAYE-RSMGTAVPSSPD 364

Query: 1549 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1608
            EF RL+ ++PN+S++W+++MA  +++   E+ R +AE+AL TI +RE  E+LN+WVAY N
Sbjct: 365  EFRRLLMAAPNNSYLWVQWMAHHVALQQQEETRLVAEKALSTIGVRETQERLNVWVAYMN 424

Query: 1609 LENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1667
            LEN +G    E++  VF+RALQ   D   V+  L  ++  T +      L   M+ KF++
Sbjct: 425  LENIHGT--VESLSAVFKRALQRAPDQLVVYERLADIFSATRKPNQLLALCRTMVSKFRN 482

Query: 1668 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
              + W R  + L+ Q +++ ++ +V+    +L R  +   + + A+ E+K+G  + GR++
Sbjct: 483  EQRTWERLGKVLIDQKKRDQLRRMVKDMGGALRRDAYSLTVVRLAVHEYKSGSVENGRAL 542

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERAISLSLPPKKMKFLFK 1779
            FEG++   PK++D+WS YLDQE+ L         V L+R L ERA++ +   K M+    
Sbjct: 543  FEGLVVRMPKKSDVWSAYLDQEMALLVRRDESAAVPLVRALLERAVATNFSAKVMQQFLT 602

Query: 1780 KYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
            +++ +E++ G    +E VK +A  YVE+ +
Sbjct: 603  RFMSFERAYGSPADVEKVKTRARSYVEAKI 632


>gi|358399275|gb|EHK48618.1| hypothetical protein TRIATDRAFT_145463 [Trichoderma atroviride IMI
           206040]
          Length = 1793

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 199/721 (27%), Positives = 315/721 (43%), Gaps = 76/721 (10%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL----------- 57
           G  + G V ++N+ +L I LP  L G A     +   L + +E   D             
Sbjct: 144 GSLVLGQVTKINKLNLEISLPNNLTGHASIV-TISEQLTSRLEGGADKESDSDEEESSDE 202

Query: 58  ----LPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 112
               L +IF VGQ V   V+   D      GK+KI LSLR S    GL  + V     + 
Sbjct: 203 SDINLQSIFKVGQYVRAYVVSTSDSTASGKGKKKIELSLRPSETNTGLEKDDVVPNSTVM 262

Query: 113 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-------VKPGLLLQGVVRSIDRT 165
           A V S+ED G ++  G+P+  GFLP      NS ID       ++PG +    V      
Sbjct: 263 ASVVSVEDRGCVMDLGIPNLNGFLP------NSEIDPLIDHERLQPGAVFLCQVTG-KGA 315

Query: 166 RKVVYLSSDPDTVSKCVTKDLKG--ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGT 223
            K V LS   D +    TK L G   +I+  +PG +V+  V      G+    +     T
Sbjct: 316 AKTVQLSLMQDKLGS--TKALPGDATTINTFLPGTLVNILVSENEGRGLGGKIMGAVDAT 373

Query: 224 VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL---------- 271
            D+ H        + K  Y    KV ARI+   PT++   +G++L P+++          
Sbjct: 374 ADLIHSGVGPNDADLKAKYKVGSKVKARIICNFPTAKDPKLGISLLPHIMSLTRKRQDTK 433

Query: 272 ---HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
                  P   + +    ++  V  V+  +GL +D     +    +V IS V + +V  L
Sbjct: 434 SKTEQPLPIEVMPISSFVEKCTVRHVEDNIGLFVDTGVAGLG--GFVHISRVKDGKVDAL 491

Query: 329 EKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV- 384
            +    YK G+  R RI+G+  ++GL +     S  +       DV  G V+ G++  + 
Sbjct: 492 YETSGPYKVGTVHRGRIVGYNEMDGLFSISFAKSILDQQYIRVEDVPIGSVINGEIEKLV 551

Query: 385 ----DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITV 438
                  G I++   G+    P  H+S+  +  P KKF+VG ++  RVL      +++ +
Sbjct: 552 IKEQGVTGLIIKVAEGITGFVPENHLSDIRLQNPEKKFRVGMKVKARVLSTNPLKRQMRL 611

Query: 439 THKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 498
           T KKTLV S+   + SY E +  + T G I K++K+G  V+FY  ++GF P SE+     
Sbjct: 612 TLKKTLVNSEAPTIKSYDEVSIGMQTLGTIVKVQKNGAHVQFYGHLKGFLPVSEMSEAYI 671

Query: 499 CEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVV 552
            +P   +  GQV+    +   P +RR  +S      F +      +D  +KLG +VS  V
Sbjct: 672 RDPMEHFRAGQVLSVHALEVDPEARRFIVSCKDPSAFGLDKQTALKD--LKLGDVVSAKV 729

Query: 553 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLD-NESS 610
              T + + V ++     K  +P  HL D            I  G     L+VL+ NE+ 
Sbjct: 730 TQKTEDQIFVELVDSQL-KAILPVGHLTDKSSSKNQYAWKRISTGQTLSDLVVLEKNENR 788

Query: 611 N-LLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 667
             + L+ K SL+ ++Q+  L          ++V G+V NI  T  FV+F G L    PR 
Sbjct: 789 RAITLTQKPSLVKASQENKLLKSFHDAKVGAIVQGFVRNITVTAVFVQFAGNLNALLPRG 848

Query: 668 K 668
           +
Sbjct: 849 R 849



 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/285 (38%), Positives = 172/285 (60%), Gaps = 15/285 (5%)

Query: 1533 AAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1590
            A  +R  E DA  P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR +AERA+++
Sbjct: 1491 AQVDRTAELDAHGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREVAERAIKS 1550

Query: 1591 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1650
            INIREE EKLN+WVAY NLE  YG+  +  V  VF+RA QY D ++V+  L  +Y ++E+
Sbjct: 1551 INIREETEKLNVWVAYLNLEVAYGS--KHTVEDVFKRACQYNDEQEVYERLASIYIQSEK 1608

Query: 1651 NKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFI 1707
             K ADEL   M+KKF   +  VW      L   K +    +A++ RA   L  H     +
Sbjct: 1609 LKQADELFEAMLKKFGAKAPSVWTNYAHFLHVTKNEPARARALLPRATQQLDSHNGQNMV 1668

Query: 1708 SQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLF 1761
            S+ A LEF+  NG  +RGR+MFEG+L+ +PK+ D+W+  LD EI +     D   +R +F
Sbjct: 1669 SRFAALEFRSPNGEPERGRTMFEGLLAAFPKKGDIWNQLLDLEIGIASSSADHTAVRDVF 1728

Query: 1762 ERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            ER   +  L P++ +  F+++  +E+ +  + + + V  KA E+ 
Sbjct: 1729 ERRTRVKGLKPQQAEKWFRRWAAWEEKLDPKGK-DRVMAKAQEWA 1772



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 143/339 (42%), Gaps = 39/339 (11%)

Query: 211 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 270
           G+++      TG V   HL +     N +  +    KV AR+L  +P  R + LTL   L
Sbjct: 559 GLIIKVAEGITGFVPENHLSD-IRLQNPEKKFRVGMKVKARVLSTNPLKRQMRLTLKKTL 617

Query: 271 LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY------VTISDVAEEE 324
           +++ AP         YD+  +    + LG ++ +         Y      + +S+++E  
Sbjct: 618 VNSEAPTIKS-----YDEVSIGM--QTLGTIVKVQKNGAHVQFYGHLKGFLPVSEMSEAY 670

Query: 325 VRKLEKKYKEGSCVRVRIL-----GFRHL----EGLATGILKASAFEGLVFTHSDVKPGM 375
           +R   + ++ G  + V  L       R +    +  A G+ K +A +       D+K G 
Sbjct: 671 IRDPMEHFRAGQVLSVHALEVDPEARRFIVSCKDPSAFGLDKQTALK-------DLKLGD 723

Query: 376 VVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVK---PGKKFKVG---AELVFRV 428
           VV  KV         V+     +KA+ P+ H+++    K     K+   G   ++LV   
Sbjct: 724 VVSAKVTQKTEDQIFVELVDSQLKAILPVGHLTDKSSSKNQYAWKRISTGQTLSDLVVLE 783

Query: 429 LGVKSKRITVTHKKTLVKSKL--AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
                + IT+T K +LVK+     +L S+ +A    I  G++  I     FV+F   +  
Sbjct: 784 KNENRRAITLTQKPSLVKASQENKLLKSFHDAKVGAIVQGFVRNITVTAVFVQFAGNLNA 843

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 525
             PR  L  D   +P       + ++ +I+++IP  +RI
Sbjct: 844 LLPRGRLPADVQAQPDFGMRKFESIEVKIVATIPELKRI 882



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 113/269 (42%), Gaps = 17/269 (6%)

Query: 328  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 387
            LE  +  GS ++VR+      +     +   S       T + +K  MV+ GK+  V+  
Sbjct: 1065 LEANFPVGSAIKVRVTSV-DAKNKRLDLSARSPNASETITWASLKQNMVLPGKITKVNER 1123

Query: 388  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT-L 444
              +V+    V     LP M +        K+K G  +   ++ V +  KRI ++ + + +
Sbjct: 1124 QVLVKLSEAVSGPVHLPDMVDDYGTVDTLKYKKGDIVRVSIVDVDASNKRIRLSMRPSRI 1183

Query: 445  VKSKLAI----LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
            + S L +    +S  A+ +   I  G++  +   G FV     V GF   S L      E
Sbjct: 1184 MSSTLPVADKEISKIAQLSTGDIVRGFVKNVADKGVFVLLGGQVTGFVKISNLSDRFLKE 1243

Query: 501  PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-------DLVKLGSLVSGVVD 553
                + V Q+VK R+++   A+ ++ LS  +K + V ED       + +K G +V+GVV 
Sbjct: 1244 WKDSFQVDQLVKGRVIALDAATSQLELS--LKSSVVDEDYKPPVGYNDIKEGQIVTGVVR 1301

Query: 554  VVTPNAVVVYVIAKGYSKGTIPTEHLADH 582
             V      + +       G      +AD+
Sbjct: 1302 KVEEFGAFIVIDNSANVSGLCHRTQMADN 1330



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 139/321 (43%), Gaps = 37/321 (11%)

Query: 159  VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 218
            V S+D   K + LS+     S+ +T     +  ++++PG     ++  + E  V++    
Sbjct: 1079 VTSVDAKNKRLDLSARSPNASETIT--WASLKQNMVLPG-----KITKVNERQVLVKLSE 1131

Query: 219  YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP- 277
              +G V +  + + + T +    Y +   V   I+ VD +++ + L++ P  + +   P 
Sbjct: 1132 AVSGPVHLPDMVDDYGTVDTLK-YKKGDIVRVSIVDVDASNKRIRLSMRPSRIMSSTLPV 1190

Query: 278  --------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 329
                    + +  GDI         D+G+ +LL    T      +V IS++++  +++ +
Sbjct: 1191 ADKEISKIAQLSTGDIVRGFVKNVADKGVFVLLGGQVT-----GFVKISNLSDRFLKEWK 1245

Query: 330  KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGMVVKGKVI 382
              ++    V+ R++        AT  L+ S    +V         ++D+K G +V G V 
Sbjct: 1246 DSFQVDQLVKGRVIAL----DAATSQLELSLKSSVVDEDYKPPVGYNDIKEGQIVTGVVR 1301

Query: 383  AVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITV 438
             V+ FGA  ++     V  LC    M++  +    K +K G ++  RVL V    +RI+ 
Sbjct: 1302 KVEEFGAFIVIDNSANVSGLCHRTQMADNAVKDATKLYKEGDKVKARVLEVDPTKRRISF 1361

Query: 439  THKKTLVKSKLAILSSYAEAT 459
              K +  + +   + S A A 
Sbjct: 1362 GLKPSFFEDEDTDMESDAGAA 1382



 Score = 41.2 bits (95), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 117/288 (40%), Gaps = 42/288 (14%)

Query: 5    NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHV 64
            ++   M L G + +VNE+ +++ L   + G     D +D           D L    +  
Sbjct: 1106 SLKQNMVLPGKITKVNERQVLVKLSEAVSGPVHLPDMVDDY------GTVDTLK---YKK 1156

Query: 65   GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL---------SLETVQEGMVLTAYV 115
            G +V   ++ +D   K     +I LS+R S +              +  +  G ++  +V
Sbjct: 1157 GDIVRVSIVDVDASNK-----RIRLSMRPSRIMSSTLPVADKEISKIAQLSTGDIVRGFV 1211

Query: 116  KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL----LLQGVVRSIDRTRKVVYL 171
            K++ D G  +  G    TGF+  +NL++    + K       L++G V ++D     + L
Sbjct: 1212 KNVADKGVFVLLG-GQVTGFVKISNLSDRFLKEWKDSFQVDQLVKGRVIALDAATSQLEL 1270

Query: 172  SSDPDTVSKCVTKDLKG-ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL- 229
            S      S  V +D K  +  + +  G +V+  V+ + E G  +        + ++  L 
Sbjct: 1271 S----LKSSVVDEDYKPPVGYNDIKEGQIVTGVVRKVEEFGAFI----VIDNSANVSGLC 1322

Query: 230  QNTFPTTNWKND----YNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 273
              T    N   D    Y +  KV AR+L VDPT R +   L P    +
Sbjct: 1323 HRTQMADNAVKDATKLYKEGDKVKARVLEVDPTKRRISFGLKPSFFED 1370


>gi|391333551|ref|XP_003741176.1| PREDICTED: uncharacterized protein LOC100897193 [Metaseiulus
            occidentalis]
          Length = 976

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 173/282 (61%), Gaps = 10/282 (3%)

Query: 1531 IRAAEERLLE----KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1586
            IR AE +L       + P+T +EF+RLV + P+   +W+KYMA  L   +V+KAR +A+R
Sbjct: 695  IRDAELKLTSPAGATNMPKTTEEFDRLVMADPSDGSLWVKYMAHHLQQLEVDKARQVAKR 754

Query: 1587 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1646
             L+ ++   E +KL++W+A  NLEN YG   +E++  VF+ AL+  DP KV+  +  +Y 
Sbjct: 755  GLKFVS-GNEADKLSLWLASLNLENMYGT--QESLDTVFKEALKQNDPIKVYSHMAKIYG 811

Query: 1647 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ--QEGVQAVVQRALLSLPRHKHI 1704
             T +N+L  E+   M+KKFK   +VW+     L      QE  Q +++R+  SL   +H+
Sbjct: 812  MTGKNELCREIYQIMLKKFKQHREVWIDFGSWLFDSGSLQEARQ-LMKRSFNSLTEKEHV 870

Query: 1705 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1764
            + I + + LEF  G  D G+S+ + +L  YP+R DLW++Y+DQ ++L D D +R  F + 
Sbjct: 871  EVILKFSQLEFAKGERDFGKSLMDNLLLSYPRRLDLWNVYIDQLVKLNDFDAVRINFNKL 930

Query: 1765 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            +S  LP +KMK  FKK+L++E   G  E +E VKQK ++Y++
Sbjct: 931  LSAKLPVRKMKSAFKKWLDFETKHGTPESLEEVKQKVVDYID 972


>gi|322698144|gb|EFY89917.1| rRNA biogenesis protein RRP5, putative [Metarhizium acridum CQMa 102]
          Length = 1796

 Score =  191 bits (485), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/282 (38%), Positives = 169/282 (59%), Gaps = 14/282 (4%)

Query: 1532 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1591
            R AE   L+   P+T  ++ERL+   P+SS +WI+YM F + ++++ KAR +AERA+++I
Sbjct: 1500 RTAE---LDAHGPQTSSDYERLLLGQPDSSKLWIQYMEFQMKVSELAKAREVAERAIKSI 1556

Query: 1592 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1651
            NIR+E EKL +WVAY  LE  YG   ++ V  VF+RA QY D  KVH  L  +Y ++E+ 
Sbjct: 1557 NIRKEEEKLKVWVAYLKLEVRYGT--KQTVEDVFKRACQYNDELKVHEELASIYIQSEKL 1614

Query: 1652 KLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFIS 1708
            K AD+L   M+KKF   +  VW      L   + Q +  +A++ RA   LP H     + 
Sbjct: 1615 KDADDLYESMLKKFGAKAPSVWTNYAYFLSVARNQPDRARALLPRATQRLPAHHSQNIVG 1674

Query: 1709 QTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQE--IRLGDVDLIRGLFERA 1764
            Q A LEF+  NG  +RGR+MFEG+L+ +PKR DLWS  LD E  +   D   +R ++ER 
Sbjct: 1675 QFAALEFRSPNGEPERGRTMFEGLLATWPKRGDLWSWLLDLEEGVAGSDPTAVRDVYERR 1734

Query: 1765 ISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
              +  L P + K  F++++++E+ +  + + + V  KA ++ 
Sbjct: 1735 TRVKGLKPNQAKKWFRRWVKWEEKLDPKGK-DKVMAKAQDWA 1775



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 193/755 (25%), Positives = 335/755 (44%), Gaps = 71/755 (9%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE-------------- 54
           G  + G +  +N  DL + LP  L G      A+   L N ++                 
Sbjct: 147 GSLVLGQITRINNLDLEVALPNNLTGHVSVV-AVSEQLTNRVQEAAAEQDDEEDESSDET 205

Query: 55  DNLLPTIFHVGQLVSCIVLQLDD-----DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGM 109
           D  L ++F VGQ +   V+   D     D K   KRKI LSLR +    GL  + +    
Sbjct: 206 DVDLKSMFVVGQYLRVYVVSTMDESAIGDGKNKTKRKIELSLRPTETNSGLGKDDIVANS 265

Query: 110 VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTR 166
            + A V S+ED G ++  G+P    FLP   +  +S ID   ++ G +    V       
Sbjct: 266 TVMASVVSVEDRGCVMDVGIPHLRAFLPHGEV--DSTIDQSRLQEGSVFLCQVTGKGSNG 323

Query: 167 KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 226
            VV LS     +        +  +I+  +PG  V   + +I   G+    + +   T D+
Sbjct: 324 NVVQLSLQQKKLGSLKDVPTEATTINAFLPGTNVDVLITNIDRRGLAGKVIGHLDVTADL 383

Query: 227 FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL----------HNR 274
            H       T+ +  Y    KV AR++   PT++   +G++L P++           +  
Sbjct: 384 VHSGAGPNGTDLEATYKVGSKVKARVVCNFPTAKEPKLGISLLPHITSLTRKHPAKDNKT 443

Query: 275 APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--- 331
            P   + +  + ++  V RV+  +GL +DI    +    +V IS V + +V  L +    
Sbjct: 444 LPTEALPISSLVEKCTVRRVESEIGLFVDIGIAGLG--GFVHISRVKDGKVDALYESSGP 501

Query: 332 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK----VIAVDSF 387
           Y+ GS  + R++G+  L+G      + S  +       DV  G V+  +    VI  +  
Sbjct: 502 YQLGSVHKGRVVGYSELDGQFHLSFEKSILDQQYIRMEDVPVGAVITCEIEKLVIKEEGV 561

Query: 388 -GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTL 444
            G I++   G+       H+S+ ++  P KKF+ G ++  RVL      K+I  T KKTL
Sbjct: 562 RGLILKIADGITGYVAERHLSDIKLQHPEKKFREGMKVKARVLSTNPFKKQIRFTLKKTL 621

Query: 445 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 504
           V S   ++ S+ +A   L   G I K++ +G  ++FY  ++GF P SE+      +P+  
Sbjct: 622 VNSDAPVIKSHEDAVVGLQVPGTIIKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEH 681

Query: 505 YHVGQVVKCRIMSSIPASRRINLSF-------MMKPTRVSEDDLVKLGSLVSGVVDVVTP 557
           + +GQVV   I+   P  RR+ +S        + K T +     +K+G +V+  V   T 
Sbjct: 682 FRIGQVVSVHILHVDPEQRRLIVSCKDPGAFGLDKQTALKN---LKVGEMVAAKVTQKTE 738

Query: 558 NAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLD-NESSN-LL 613
           + + V ++     K  +P  HL D    ++   +K V   G     L+V+D NE    ++
Sbjct: 739 DQIFVELVDSQL-KAILPVGHLTDKSPSKNQFALKRV-SAGQTLSDLMVIDKNEKRRAII 796

Query: 614 LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AV 670
           L+ K SLI ++++  L S+      +++V  +V N+ +T  FV+F   L    P+S+   
Sbjct: 797 LTQKPSLIKASKEGKLLSNFDDAKQDAIVPAFVRNVTQTAVFVQFAHNLYALLPKSRLPA 856

Query: 671 DGQ-RADLSKTYYVGQSVRSNILDVNSETGRITLS 704
           D Q + D     Y  +S+   I+ V ++  RI ++
Sbjct: 857 DAQSKPDFGMHKY--ESIEVKIISVINDLRRIMVA 889



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 161/360 (44%), Gaps = 33/360 (9%)

Query: 16   VAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSCIVLQ 74
            V  V  + L + L   +RG   A +A D + L N++EAN        F VG  +   V  
Sbjct: 1032 VNNVTPQFLWVNLSPSVRGRVSAMEASDDLSLLNDLEAN--------FPVGSALKVKVKS 1083

Query: 75   LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG-LPSFT 133
            +D +K  +      LS R S   +G+   ++++ MVL   +  + +   ++    + S  
Sbjct: 1084 IDAEKNRLD-----LSARSSTDSQGVDWTSLKQNMVLPGKITKVNERQVMVKLSDIVSGP 1138

Query: 134  GFLPRNNLAEN----SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLK 187
              LP  ++A+N    + ++ K   +++  +  +D   K + LS  P  +  S     D +
Sbjct: 1139 VHLP--DMADNYDDINTLNYKKNQIVRVAIVEVDANNKRLRLSMRPSRILSSTLPVADKE 1196

Query: 188  GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 247
               +  +  G +V   V+++ + G+ ++   + T  V I +L + F   +WK+ +   + 
Sbjct: 1197 IADLSQVAAGDVVRGFVKNVSDKGLFVALGGHITALVKIANLSDRF-LKDWKDHFQVDQL 1255

Query: 248  VNARILFVDPTSRAVGLTLNPYLL-HNRAPPSHVKVGDIYDQS----KVVRVDRGLGLLL 302
            V  R+L VD   + V ++L    +  +  PP  V   DI + S    KV +V+     +L
Sbjct: 1256 VKGRVLSVDSALKQVEMSLKASAVDEDYTPP--VSYNDIKEGSVVTGKVRKVEEFGAFIL 1313

Query: 303  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 362
               S  VS       S++A+E V+   K YKEG  V+  +L    ++   +  LK S F+
Sbjct: 1314 VDNSNNVS--GLCHRSEMADEAVKDATKLYKEGDAVKALVLEVDAVKRRISFGLKPSLFD 1371


>gi|392571061|gb|EIW64233.1| hypothetical protein TRAVEDRAFT_138819 [Trametes versicolor
           FP-101664 SS1]
          Length = 1486

 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 205/773 (26%), Positives = 347/773 (44%), Gaps = 89/773 (11%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEA-NEDN--- 56
           + ++ GMK+ G V  V    L++ LP  L     + + +  L  IL++E +A N D+   
Sbjct: 121 KRVAVGMKILGQVVSVEPLALIVSLPNQLFAHVPITQISSQLTHILESEDDAENSDDEEE 180

Query: 57  -----LLPTIFHV---GQLVSCIV-------------LQLDDDKKEIGKRKIWLSLRLSL 95
                 +P +F +   GQ V  +V             L    D+ +   R++ LSL    
Sbjct: 181 EASASRVPDLFEIFQPGQYVRAVVSAVHQPGSTDATGLGRARDEVQKASRRVELSLVPEK 240

Query: 96  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVK--P 151
           + +G++   +  G  L+A VKS+EDHGYIL  G+P  +GFL     A+   SG + K   
Sbjct: 241 VNEGVAKADLLAGFALSASVKSVEDHGYILDLGIPEVSGFLSFKAAAQKGPSGAEKKFHV 300

Query: 152 GLLLQGVVRSIDRTRKVVYLSSD---PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 208
           G LL  +V  +    +   +S D   P T        +K +     VPG +V + V ++ 
Sbjct: 301 GRLLDVIVTKLSDNGRTCNVSVDSYAPKTAPLTEVTSVKSV-----VPGALVQSLVTAVQ 355

Query: 209 ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDP-TSRAVGLTL 266
            +G++L  L +F GTVD FHL+    + + +++Y   +KV AR+L+ + P T     L+L
Sbjct: 356 PDGLILQVLGFFDGTVDQFHLR----SGDTEDNYKIGQKVKARVLYDISPSTPPRFALSL 411

Query: 267 NPYLLH---------------NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 311
             +++                  A P    VG   D  KV R++   GL +++ S     
Sbjct: 412 ADHVVKYSAKSAASGSAATDLREAYP----VGTTLDAVKVTRIESERGLTVEVGS---GV 464

Query: 312 PAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 368
             +V IS V++E V  L      +K G+  R R+ G+  L+GL    LK S         
Sbjct: 465 AGFVHISQVSDEHVPTLSTTSGAWKVGTVHRARVTGYFPLDGLLQLSLKPSILAQKFLQV 524

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           +DV+ G ++KG V  +      V   G V  +    H ++  +  P K+FK G  +  RV
Sbjct: 525 ADVQVGELIKGTVKKLTDTALFVSISGNVDGVIWPNHYADIVLKHPQKRFKPGGSIKCRV 584

Query: 429 LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V S  KRI +T KKTLV+S L I+S  ++    ++TH  I KI +    V FYN ++ 
Sbjct: 585 LVVDSERKRIALTAKKTLVESTLPIVSQLSDVRVGVVTHAVIFKISEKSLQVEFYNNLKA 644

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP----TRVSEDDLV 542
             P  E         S+ + +G+ V+ R+++    + RI  S         + +++   V
Sbjct: 645 SVPAREASETTLSSLSAAFAIGKPVQVRLIAVDAETGRITASIRQAAPNFKSAITDISGV 704

Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQ 601
            +G +V GVV  +  +  VV  +        +   +LA+  E +   ++S +K G +   
Sbjct: 705 DIGDIVEGVVSDIRKDKAVV-TLQPTQVTALLSLNNLANRREVSVAQLRSALKVGEKLQD 763

Query: 602 LLVL--DNESSNLLLSAK---YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
           L+V   + E   +L+++K      I     L  D   +    +V G V      G  ++ 
Sbjct: 764 LVVTSRNPEKGFVLVASKPKEKEAILQKNHLSLDT--VQAGQLVGGRVLRHNRYGALIKL 821

Query: 657 LGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLKQS 708
              + G    + AVD   +   K +  V   +++ +L V+ E  ++ LS + S
Sbjct: 822 TNSIMGVLHPTDAVDDYES--GKPFPGVDSVLKAVVLSVDKERRQLMLSTRMS 872



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 205/804 (25%), Positives = 353/804 (43%), Gaps = 103/804 (12%)

Query: 636  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DV 694
            P ++V   V  +   G  ++ LG   G   +     G   D    Y +GQ V++ +L D+
Sbjct: 343  PGALVQSLVTAVQPDGLILQVLGFFDGTVDQFHLRSG---DTEDNYKIGQKVKARVLYDI 399

Query: 695  NSETG-RITLSLKQSCCS--------STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            +  T  R  LSL               + A+ ++E + +   +  ++ ++        VE
Sbjct: 400  SPSTPPRFALSLADHVVKYSAKSAASGSAATDLREAYPVGTTLDAVKVTRIESERGLTVE 459

Query: 746  GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKA 805
               +GS + G VH S      VS +EH       T    +GA  + G+V +A +      
Sbjct: 460  ---VGSGVAGFVHISQ-----VS-DEH-----VPTLSTTSGAW-KVGTVHRARVTGYFPL 504

Query: 806  ERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 864
            + L+ LSLK ++   +F +                  D+ V + +   V+ + +  L +S
Sbjct: 505  DGLLQLSLKPSILAQKFLQV----------------ADVQVGELIKGTVKKLTDTALFVS 548

Query: 865  LPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 924
            +      + + +       K PQK+F  G S+   V+ + S     R  + L A      
Sbjct: 549  ISGNVDGVIWPNHYADIVLKHPQKRFKPGGSIKCRVLVVDSE----RKRIALTAKKTLVE 604

Query: 925  SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 984
            S+     + S   VG +  A I +I    L+++F       +   E ++     + +L +
Sbjct: 605  STLPIVSQLSDVRVGVVTHAVIFKISEKSLQVEFYNNLKASVPAREASE---TTLSSLSA 661

Query: 985  NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1044
             F IG+ V  R+IA   +            I  S+   +      + +   V IG  V G
Sbjct: 662  AFAIGKPVQVRLIAVDAETG---------RITASIRQAAPNFKSAITDISGVDIGDIVEG 712

Query: 1045 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR--FHIGKAVTGHVL-SINKE 1101
             V  +  + A++T+       L  L++     E+   Q R    +G+ +   V+ S N E
Sbjct: 713  VVSDIRKDKAVVTLQPTQVTALLSLNNLANRREVSVAQLRSALKVGEKLQDLVVTSRNPE 772

Query: 1102 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1161
            K  + +  +P +     +   +S D +Q     G +VGGR+  +     G ++++   + 
Sbjct: 773  KGFVLVASKPKEKEAILQKNHLSLDTVQA----GQLVGGRV--LRHNRYGALIKLTNSIM 826

Query: 1162 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1221
            G +H T        D +  Y+ G+  P  G D    +K  VL + +  R           
Sbjct: 827  GVLHPT--------DAVDDYESGK--PFPGVD--SVLKAVVLSVDKERRQL--------- 865

Query: 1222 SLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1279
                M ST  S L    D P   + +  +  L     V+G++K++   G F+ L R +DA
Sbjct: 866  ----MLSTRMSRLFPSQDKPIVDREITSLSQLKVGDKVRGFIKSIAEHGLFVTLGRDIDA 921

Query: 1280 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1339
            +V +  L D +V+  +  F + +LV GR+LSV    K++E++ ++ D +   QS++ +LS
Sbjct: 922  RVQIKELFDDFVKDWKSRFTVNQLVNGRILSVNVEKKQLELSFRSGDLKRDGQSQL-SLS 980

Query: 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI----YRAGEKV 1395
            +L  G  + G++K+VE YGLFI IE + L GLCH SELS D+ D   T+    +R G+KV
Sbjct: 981  DLSEGQKIDGRVKKVEDYGLFIEIEGSKLSGLCHKSELS-DNKDGDVTLALRSFRVGDKV 1039

Query: 1396 KVKILKVDKEKRRISLGMKSSYFK 1419
            K  IL VD EKRR+S G+K SYF+
Sbjct: 1040 KAVILSVDLEKRRVSFGLKPSYFE 1063



 Score = 46.2 bits (108), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 100/472 (21%), Positives = 190/472 (40%), Gaps = 44/472 (9%)

Query: 87  IWLSLRLSLL-YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-- 143
           + LSL+ S+L  K L +  VQ G ++   VK + D    +     +  G +  N+ A+  
Sbjct: 508 LQLSLKPSILAQKFLQVADVQVGELIKGTVKKLTDTALFVSIS-GNVDGVIWPNHYADIV 566

Query: 144 --NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC--VTKDLKGISIDLLVPGMM 199
             +     KPG  ++  V  +D  RK + L++    V     +   L  + +     G++
Sbjct: 567 LKHPQKRFKPGGSIKCRVLVVDSERKRIALTAKKTLVESTLPIVSQLSDVRV-----GVV 621

Query: 200 VSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 259
               +  I E  + + F      +V       T   ++    +   K V  R++ VD  +
Sbjct: 622 THAVIFKISEKSLQVEFYNNLKASVPAREASET-TLSSLSAAFAIGKPVQVRLIAVDAET 680

Query: 260 RAVGLTLN---PYLLHNRAPPSHVKVGDIYDQS-KVVRVDRGLGLLLDIPSTPVSTPAYV 315
             +  ++    P         S V +GDI +     +R D+ +  L      P    A +
Sbjct: 681 GRITASIRQAAPNFKSAITDISGVDIGDIVEGVVSDIRKDKAVVTL-----QPTQVTALL 735

Query: 316 TISDVA---EEEVRKLEKKYKEGSCVRVRILGFRHLE-GLATGILKASAFEGLV----FT 367
           +++++A   E  V +L    K G  ++  ++  R+ E G      K    E ++     +
Sbjct: 736 SLNNLANRREVSVAQLRSALKVGEKLQDLVVTSRNPEKGFVLVASKPKEKEAILQKNHLS 795

Query: 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA-LCPLPHMSEFEIVKP---------GKK 417
              V+ G +V G+V+  + +GA+++    +   L P   + ++E  KP            
Sbjct: 796 LDTVQAGQLVGGRVLRHNRYGALIKLTNSIMGVLHPTDAVDDYESGKPFPGVDSVLKAVV 855

Query: 418 FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 477
             V  E    +L  +  R+  +  K +V  ++  LS   +  D++   G+I  I +HG F
Sbjct: 856 LSVDKERRQLMLSTRMSRLFPSQDKPIVDREITSLSQL-KVGDKV--RGFIKSIAEHGLF 912

Query: 478 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           V     +       EL  D   +  S + V Q+V  RI+S     +++ LSF
Sbjct: 913 VTLGRDIDARVQIKELFDDFVKDWKSRFTVNQLVNGRILSVNVEKKQLELSF 964


>gi|340052139|emb|CCC46410.1| putative rRNA biogenesis protein [Trypanosoma vivax Y486]
          Length = 671

 Score =  190 bits (483), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 186/308 (60%), Gaps = 11/308 (3%)

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM 1571
            + K +     K ++ + +E   A ER ++   P + +EF RL+ +SPN+S++W+++M++ 
Sbjct: 332  NAKGSSQIGNKVRKRKLEEAIDAYERSMDTAVPSSEEEFRRLLLASPNNSYLWVQWMSYH 391

Query: 1572 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1631
            +S+   E+AR +AE+ALQTI +RE +E+LN+WVAY NLEN +G    E++  VF+R +++
Sbjct: 392  VSLQQYEEARLVAEKALQTIGLRETDERLNVWVAYMNLENMHGTA--ESLSSVFKRTVEH 449

Query: 1632 C-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQA 1689
              D   V+  L  +++ T ++     L   M+ KF+ + + W R    L+ Q +++ ++ 
Sbjct: 450  SLDKLVVYERLADIFKATHKSNQLLALCRTMVSKFRDAQRTWERLGVVLVDQNKRDQLKR 509

Query: 1690 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1749
            +++    +L R ++   +   A+ E++NG  + GR++ EG++   PK++D+WS+YLDQE+
Sbjct: 510  MMKDMGGALKRDEYALTVVHVAVYEYRNGSVENGRALLEGLIMRMPKKSDVWSVYLDQEL 569

Query: 1750 -------RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802
                       V L+R LFERA++ +   K M+ L  +++ +EK+ G    +E V+ +A 
Sbjct: 570  GLLARRAAEAAVPLVRSLFERAVATNFSAKVMQKLLTRFMAFEKAYGTPADVERVRARAR 629

Query: 1803 EYVESTLA 1810
             YVE+ ++
Sbjct: 630  SYVEAKIS 637


>gi|115504093|ref|XP_001218839.1| rRNA biogenesis protein [Trypanosoma brucei brucei strain 927/4
            GUTat10.1]
 gi|83642321|emb|CAJ16096.1| rRNA biogenesis protein, putative [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 679

 Score =  189 bits (481), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 180/307 (58%), Gaps = 12/307 (3%)

Query: 1513 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1572
            E  N +  K  K + E+ I A E R +E   P + +EF+RL+ +SPN+S++W+++M   +
Sbjct: 324  ENTNVNRSKIRKRKLEETIDAYE-RSMETAVPSSSEEFQRLLLASPNNSYLWVQWMTHHV 382

Query: 1573 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1632
            S+   E+AR +AE+AL TI +RE  E+LN+WVAY NLEN +G    E++  VF+RAL++ 
Sbjct: 383  SLQQFEEARLVAEKALTTIGVRETQERLNVWVAYMNLENLHGTA--ESLASVFKRALRHA 440

Query: 1633 -DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAV 1690
             D   V+  L  ++  T +      L   M+ K +   +VW R    L+   +++ ++ V
Sbjct: 441  LDELVVYERLADIFSATRKFNQLLSLCRAMVSKNRKVPRVWERLGTVLIDHNKRDQLKRV 500

Query: 1691 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1750
            ++    +L R ++   +    + E++NG  + GR++FEG+L   PK++D+WS+YLDQE+ 
Sbjct: 501  LKDMSDALKRDEYALVVVHLGVHEYRNGSVENGRALFEGLLLRMPKKSDVWSVYLDQELG 560

Query: 1751 L-------GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803
            L            +RGLFERA+S S   K M+ +  +++ +E++ G    +E VK +A  
Sbjct: 561  LLARRSEVASAVFVRGLFERAVSTSFSAKVMQQVLTRFMSFERAHGTPADVEKVKARARS 620

Query: 1804 YVESTLA 1810
            YVE+ ++
Sbjct: 621  YVEAKIS 627


>gi|21355217|ref|NP_651245.1| CG5728 [Drosophila melanogaster]
 gi|16769580|gb|AAL29009.1| LD41803p [Drosophila melanogaster]
 gi|23172158|gb|AAF56280.2| CG5728 [Drosophila melanogaster]
          Length = 1430

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 187/321 (58%), Gaps = 12/321 (3%)

Query: 1489 DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAP-RTP 1547
            DE  +++  +++ Q +  + K +  K    A+ KE    EQ +R  EER  +  A   T 
Sbjct: 1114 DEDEELN--VAETQKNAAKKKRLSAKEKAKAEIKE----EQRLREIEERNADPKARLETI 1167

Query: 1548 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1607
            D++ERLV + PN+S  W+KY+AF+LS  ++EKAR++A RA+ TI+ RE  E  N+W A  
Sbjct: 1168 DQYERLVIAQPNNSISWLKYIAFLLSNTEIEKARALARRAISTISFRETQELRNMWSALL 1227

Query: 1608 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1667
            N+E  Y N  ++    V + AL   DP +++++++ + ++ ++      +L  ++ KFK 
Sbjct: 1228 NMELVYSNNFDD----VLKEALNCNDPLEIYISVVDILKKNKRKDRLSSVLTTVLNKFKT 1283

Query: 1668 SCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
              +VW    +      + + V  ++QRAL +LP  +HI  I   A L  K+   D  +++
Sbjct: 1284 ELRVWPVAAEAYFWLGKSDQVHNLLQRALRALPNQEHIPCIVSFAKLYAKHDNNDMAQTL 1343

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1786
             + +++ YPKR D+WS+Y+D  I+ G +D  R + ERA+   L P KM+ ++KKYL+ E+
Sbjct: 1344 LDDVVTSYPKRIDIWSVYVDMLIKAGLIDSARNVLERAVVQKLKPNKMQVIYKKYLQLEE 1403

Query: 1787 SVGEEERIEYVKQKAMEYVES 1807
            + G +  +  VKQ+A ++V++
Sbjct: 1404 NHGTDATVAKVKQQAEQWVKN 1424



 Score =  108 bits (270), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 158/664 (23%), Positives = 284/664 (42%), Gaps = 61/664 (9%)

Query: 10  MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEI--EANEDNLLPTIFHV 64
           M + GVV E+    L I LPG +     +A  +DA   +    +  + +E + L  +F +
Sbjct: 75  MLVMGVVKELTATALQIALPGRMFARTLVADISDAYTRVAKAAMSGDTSEYHDLTELFQL 134

Query: 65  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
           G++V    ++   +K + G+  + LSL+ + ++  L  +++++G + +  V    +HGY+
Sbjct: 135 GRIVYGKAIK--TEKLDTGRVSLLLSLKPADVHGNLHHKSIKKGFIFSGAVAEALEHGYV 192

Query: 125 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVVYLSSDPDTVSKCVT 183
           +  G+     F+P    A+   +     L ++ V     + T   V +  D     +   
Sbjct: 193 IESGVQGLQAFVPCEKPAQKLHVGQLAFLKVKTVHHDTHQSTCTCVQVEQD-----QLRI 247

Query: 184 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKNDY 242
           K     ++D ++PG +V  +V   L++G+  S +   F+  V+  HL N   T    + Y
Sbjct: 248 KSQNETNLDYILPGSIVKFKVAKHLKDGLKGSIMNESFSAYVNEHHLANALDTL---DAY 304

Query: 243 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH----------VKVGDIYDQSKVV 292
             ++  NAR+L+V P ++ V LTLN  +    A              +KVG + +++KV+
Sbjct: 305 ELNEDYNARVLYVMPLTKLVYLTLNLDIKTGAAVAKDQDEEEQEVEPIKVGSVVEKAKVL 364

Query: 293 RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEG 350
           R+  G G++L +        +Y +I    +    K E   KY   +  +VRILG+  +E 
Sbjct: 365 RLGSG-GVVLLLNKKLKGIISYGSIRGNFKGNYDKDEVLSKYGRKTKHKVRILGYDVIES 423

Query: 351 LATGILKASAFEGLVFTHSDVKPGMVVKG--KVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
           L       +     +F   D+  G +V            G  V+  G V  +     + +
Sbjct: 424 LYYCSDDPNVVNEKLFCLEDINAGDLVTAKIFKKDDKIKGWSVRI-GKVNGI-----LEQ 477

Query: 409 FEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
           F +  P  ++ VG  L  RVL V ++R    V+++   +   + IL+ YA A    +  G
Sbjct: 478 FYLA-PNVRYDVGQSLKCRVLEVNAERKICYVSNRAEYLGKGIKILTDYASAHVGNVYMG 536

Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
            + + E     V+F NG++G   R  L      E SS +  GQ  K RI++      +I 
Sbjct: 537 TVVRCEDTYVLVKFGNGIKGVLHRQNLK-----ENSSFFE-GQTTKFRILTR--NKDQIT 588

Query: 527 LSFMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVIAKGYSK-----GTIPTEHLA 580
           L+      ++ E   V++ + +   ++V +T  A        G  K     G IP   L+
Sbjct: 589 LTLPEDKFQLGEICPVEITNALDAGLEVKITFAAEDDEEDEDGNPKLEEFVGLIPLRLLS 648

Query: 581 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 640
           DHLE       V   G   D   ++ N  S  L    Y     + QL  D   +    ++
Sbjct: 649 DHLELLHAQMRVHPAGSYTDAACIMQNIFS--LRDVPY----FSGQLTKDWQSVQVGDII 702

Query: 641 HGYV 644
             YV
Sbjct: 703 RSYV 706


>gi|341879709|gb|EGT35644.1| CBN-LET-716 protein [Caenorhabditis brenneri]
          Length = 1755

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/274 (37%), Positives = 169/274 (61%), Gaps = 11/274 (4%)

Query: 1538 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1597
            LLEK    + +E  R+VRS PNS+  WI+YM+  +  +D+  AR  AE  L+ I+  E  
Sbjct: 1476 LLEK----SEEEHSRMVRSDPNSAINWIQYMSLFVEKSDLAAARKTAEEGLKAIDQTESE 1531

Query: 1598 EKLNIWVAYFNLENEYGNPPEEAVVK-VFQRALQYCDPKKVHLALLGLYERTEQNKLADE 1656
            E + +W AY N+E  YG   E A V+ VF+RA Q  +   +H  L  +Y+  ++++ A  
Sbjct: 1532 ELIKLWTAYLNMEVAYG---ESATVQEVFKRACQNVNSYTIHKTLAKIYQNAQKHQEATR 1588

Query: 1657 LLYKMIKKFK-HSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRH-KHIKFISQTAIL 1713
            +L +M+KKF+ +  +VW    + L+ Q+ Q+  + ++ RAL S P+  +HI+ IS+ A L
Sbjct: 1589 ILEEMVKKFRANKLEVWTLLAEHLMTQKDQKAARDLLPRALKSAPKAAQHIQLISKFAQL 1648

Query: 1714 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1773
            EFK+G A+RGR++ EG+++ +PK+ DLW +Y D  ++   V+  R + ERA +L L   K
Sbjct: 1649 EFKHGDAERGRTLLEGLVTAHPKKMDLWLVYADAALKYLGVEHARKILERACNLDLTTHK 1708

Query: 1774 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            M+ L+KK+LE E   G+   ++ VK +A ++++S
Sbjct: 1709 MRPLYKKWLEMESKHGDAASVQLVKMRAEKFLQS 1742



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 165/395 (41%), Gaps = 29/395 (7%)

Query: 53  NEDNL-LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 111
           NE+ + +   F +GQ+V   V+   +DK   GK K   S   + L K LS   +  G+V+
Sbjct: 110 NEEKIEMKDAFQLGQMVPFRVISKKNDK---GKAKA--SCNPARLNKHLSPNMLAAGLVI 164

Query: 112 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
              V S+E+ G IL  GL   TGF+ +   A+     +K G+ L  +VR +  T +VV +
Sbjct: 165 HTSVVSLEEKGAILDVGLDQITGFIEK---AQFPAGGLKEGIPL--IVRILSSTSRVVKV 219

Query: 172 SS--DPDTVSKCVTKDLKGISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGTVDIFH 228
           +S  + D ++    + L+   ++ L+PG ++        +  GV++       G +    
Sbjct: 220 TSFVEQDNLNMASCEKLQ---LNHLMPGTILECEPTGDAVTAGVIVGIGNGLKGILP--- 273

Query: 229 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVG 283
            +   P    +N     K + A ++F    S+ + L  +P +     +  R     + +G
Sbjct: 274 -RRNLPPRLRENPEKLGKAIRAVVMFCQQNSKILVLNAHPDIVAVSRIEKRTTFEGISIG 332

Query: 284 DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRI 342
           D    + +  +     +   +P           IS     E    +  KY+ G+    R+
Sbjct: 333 DKVTCTVIDTIPTKSIVYFTLPPIDGKKSLVTAISSRGLLENPDAVASKYEIGAEKLCRV 392

Query: 343 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 402
            G+R+ +   T   +       + T+ D K G ++  +V  +   G        VKA  P
Sbjct: 393 TGYRYADRTITVSTRKDILNQKITTYKDAKCGDILDARVHHIAKSGVYFMVCNFVKAFAP 452

Query: 403 LPHMSEFEIVKPGKK--FKVGAELVFRVLGVKSKR 435
           +  +S+  +     K  F++G E+  RV  +  +R
Sbjct: 453 MSLLSDKPLTSQKIKSLFRMGTEVKCRVWQICEQR 487


>gi|302891949|ref|XP_003044856.1| hypothetical protein NECHADRAFT_43434 [Nectria haematococca mpVI
            77-13-4]
 gi|256725781|gb|EEU39143.1| hypothetical protein NECHADRAFT_43434 [Nectria haematococca mpVI
            77-13-4]
          Length = 1773

 Score =  189 bits (479), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/265 (39%), Positives = 164/265 (61%), Gaps = 13/265 (4%)

Query: 1532 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1591
            R AE   L+ + P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR +AERA+++I
Sbjct: 1477 RTAE---LDANGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELSKAREVAERAIKSI 1533

Query: 1592 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1651
            NIREE EKLN+WVAY NLE  YG+  +  V +VF+RA QY + ++V+  L  +Y ++E+ 
Sbjct: 1534 NIREETEKLNVWVAYLNLEVAYGS--KSTVEEVFKRACQYNNEQEVYERLASIYIQSEKL 1591

Query: 1652 KLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFIS 1708
            K ADEL   M+KKF   +  VWL     L   + +  +A  ++ RA   L        +S
Sbjct: 1592 KDADELFEAMVKKFGAKAPNVWLNYAHFLHVTRNDAARARSLLPRATQQLDSRHSQNLVS 1651

Query: 1709 QTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD--LIRGLFERA 1764
            + A LEF+  NG  +RGR+MFEG+L+ +PK+ DLW   LD E  L + D   +R +FER 
Sbjct: 1652 RFAALEFRSPNGEPERGRTMFEGLLAAWPKKGDLWGQLLDLESGLAEADPTAVRDVFERR 1711

Query: 1765 ISL-SLPPKKMKFLFKKYLEYEKSV 1788
              +  L P++ +  F+++  +E+ +
Sbjct: 1712 TRVKGLKPQQAEKWFRRWATWEEKL 1736



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 175/649 (26%), Positives = 294/649 (45%), Gaps = 44/649 (6%)

Query: 58  LPTIFHVGQLVSC-IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
           L TIF +GQ V   +V  +D+     GKR+I LSLR S    GL  + V     + A + 
Sbjct: 200 LETIFSIGQYVRAYVVSTVDESGTGKGKRRIELSLRPSEANTGLEGDDVVINTTVAASIV 259

Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSS 173
           S++D G+++  G+ +   FL R+ +  +S  D   ++PG +    V S     K+  LS 
Sbjct: 260 SVQDRGFVMDTGISNLGAFLSRSEI--DSSFDEQRLQPGAVFLCQVVSKGANGKIAQLSL 317

Query: 174 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
               +           +I+  +PG +    V +    G     + +   T D+ H     
Sbjct: 318 QQKKLGNPKNVPADATTINTFLPGTIADVLVSNTDRRGFAGKIMGHLDVTADLIHSGVGP 377

Query: 234 PTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLH------------NRAPPSH 279
              +  + Y    +V ARI+   P ++   +G++L P++               + P + 
Sbjct: 378 AGVSLDSTYKIGSRVKARIICNFPAAKEPKLGISLLPHITSLEQKRPTKTTDAKKLPTTV 437

Query: 280 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGS 336
           + +  + ++  V  V+  +GL +DI    +S   +V IS V + +V  L +    YK GS
Sbjct: 438 LPISSLVEKCTVRHVEGEIGLFVDIGIPGLS--GFVHISRVKDGKVEALYESSGPYKVGS 495

Query: 337 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IV 391
             + R++G+  ++GL     + S  E       DV  G V+ G+V  + VD  G    I+
Sbjct: 496 EHKGRVVGYNQVDGLFQISFEKSVLEQQYLRLEDVPIGAVITGEVERVLVDEKGVSGLIL 555

Query: 392 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKL 449
           +   G+  L P  H+S+ ++  P KKF+ G ++  RVL       ++ +T KKTLV S+ 
Sbjct: 556 KIAEGITGLVPEQHLSDIKLQNPEKKFRPGMKIKARVLSTNLVKNQMRLTLKKTLVNSEA 615

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
            I+ SY +A+  +   G I KI+  G  ++F+  V+GF P SE+      +P   + VGQ
Sbjct: 616 PIIKSYEDASVGMQVPGTIVKIQSSGAQIQFFGPVRGFLPISEMSEAYIKDPHEHFRVGQ 675

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-----VKLGSLVSGVVDVVTPNAVVVYV 564
           VV   ++   P S+++ +S    P+    D       +++G LVSG V   T + + V  
Sbjct: 676 VVSVHVLDVEPESQKLIVS-CKDPSAFGLDKQNALKKLQVGVLVSGKVSQKTEDQIFVE- 733

Query: 565 IAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLI 621
           +     K  +P   L D            I  G     L+VL+ NE    L+L+ K SLI
Sbjct: 734 LDDAQLKAILPVGQLTDKSASKNQYAWKRISAGQTISNLMVLEKNEKRRVLILTQKPSLI 793

Query: 622 NSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
            +++   L           VV G+V NI  T  FV+F G +    P+S+
Sbjct: 794 KASEDRTLLKTFEDAKEGKVVAGFVQNITLTAVFVQFAGGVRALLPKSR 842



 Score = 77.4 bits (189), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 144/309 (46%), Gaps = 37/309 (11%)

Query: 1135 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            G ++ G + ++L    GV GL+++I   + G V    L +I + +P     E +F P   
Sbjct: 533  GAVITGEVERVLVDEKGVSGLILKIAEGITGLVPEQHLSDIKLQNP-----EKKFRP--- 584

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
               G  +K +VL  +        + L+L+ +L              V++    ++  ED 
Sbjct: 585  ---GMKIKARVLSTNLVKN---QMRLTLKKTL--------------VNSEAPIIKSYEDA 624

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
            S  M V G +  + S G  I     +   + +S +S+ Y++ P + F +G++V+  VL V
Sbjct: 625  SVGMQVPGTIVKIQSSGAQIQFFGPVRGFLPISEMSEAYIKDPHEHFRVGQVVSVHVLDV 684

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1371
            EP S+++ V+ K  D       + N L  L VG +V G++ +     +F+ +++  L  +
Sbjct: 685  EPESQKLIVSCK--DPSAFGLDKQNALKKLQVGVLVSGKVSQKTEDQIFVELDDAQLKAI 742

Query: 1372 CHVSELSEDHVDNIETIYR---AGEKV-KVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
              V +L++      +  ++   AG+ +  + +L+ ++++R + L  K S  K   D   +
Sbjct: 743  LPVGQLTDKSASKNQYAWKRISAGQTISNLMVLEKNEKRRVLILTQKPSLIKASEDRTLL 802

Query: 1428 SSEEESDEA 1436
             + E++ E 
Sbjct: 803  KTFEDAKEG 811



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 95/458 (20%), Positives = 196/458 (42%), Gaps = 68/458 (14%)

Query: 938  VGSLVQAEITEIKPLE-----LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 992
            +G+++  E+  +   E     L LK   G  G +    ++D K   ++N    F+ G  +
Sbjct: 532  IGAVITGEVERVLVDEKGVSGLILKIAEGITGLVPEQHLSDIK---LQNPEKKFRPGMKI 588

Query: 993  TARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1052
             AR+++     ++ K+ +  L++K +++  SE  + ++    D S+G +V G + K+ + 
Sbjct: 589  KARVLST----NLVKNQM-RLTLKKTLVN-SE--APIIKSYEDASVGMQVPGTIVKIQSS 640

Query: 1053 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE-KKLLRLVLRP 1111
             A +     ++   F+  S    + +++    F +G+ V+ HVL +  E +KL+     P
Sbjct: 641  GAQIQFFGPVRG--FLPISEMSEAYIKDPHEHFRVGQVVSVHVLDVEPESQKLIVSCKDP 698

Query: 1112 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1171
               G+  +       N    +  G +V G++S+          +    ++  +   +LK 
Sbjct: 699  SAFGLDKQ-------NALKKLQVGVLVSGKVSQ----------KTEDQIFVELDDAQLKA 741

Query: 1172 IC----VSDPLSGYDEGQFDPLSGYDEGQFV-KCKVLEISRTVRGTFHVELSLRSSLDGM 1226
            I     ++D  +  ++  +  +S    GQ +    VLE +   R      L+ + SL   
Sbjct: 742  ILPVGQLTDKSASKNQYAWKRISA---GQTISNLMVLEKNEKRRVLI---LTQKPSLIKA 795

Query: 1227 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1286
            S   +             L+  ED     +V G+V+N+T    F+  +  + A +  S L
Sbjct: 796  SEDRT------------LLKTFEDAKEGKVVAGFVQNITLTAVFVQFAGGVRALLPKSRL 843

Query: 1287 SDGYVESPEKEFPIGKL--VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS----- 1339
                 E P  +F + KL  +  R++SV P  +R+ V    SD     + E  +++     
Sbjct: 844  PADVQEQP--DFGMHKLQSIEVRIVSVIPDHRRIVVAPADSDEDDVVKKEKTDVASAPSD 901

Query: 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1377
            NL  G ++  +I  V+   L + +   ++ G   VS++
Sbjct: 902  NLEFGTVIKAKITSVKDTQLNVQLAGNDVQGRIDVSQV 939


>gi|195504842|ref|XP_002099252.1| GE10809 [Drosophila yakuba]
 gi|194185353|gb|EDW98964.1| GE10809 [Drosophila yakuba]
          Length = 1478

 Score =  189 bits (479), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/319 (34%), Positives = 183/319 (57%), Gaps = 12/319 (3%)

Query: 1493 DMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEE--REQEIRAAEERLLEKDAP-RTPDE 1549
            D D  +++ +   + AK    K    AK+K K E   EQ +R  EER  +  A   T D+
Sbjct: 1162 DDDEELNEAETQKNAAK----KKRLSAKEKAKAEVKEEQRLREIEERNADPKARLETIDQ 1217

Query: 1550 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1609
            +ERLV + PN+S  W+KY+AF+LS  ++EKAR +A RA+ TI+ RE  E  N+W A  N+
Sbjct: 1218 YERLVIAQPNNSISWLKYIAFLLSNTEIEKARDLARRAISTISFRETQELRNMWSALLNM 1277

Query: 1610 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1669
            E  Y N  ++    V + AL   DP +++++++ + +R ++      +L  ++ KFK   
Sbjct: 1278 ELVYSNNFDD----VLKEALNCNDPLEIYISVVDILKRNKKKDRLSTVLTTILNKFKTEL 1333

Query: 1670 KVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE 1728
            +VW    +      + + V  ++QRAL  LP  +HI  I   A L  K+   D  +++ +
Sbjct: 1334 RVWPVAAEAYFWLGKSDQVHNLLQRALRGLPNQEHIPCIVSFAKLYAKHDNNDMAQTLLD 1393

Query: 1729 GILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV 1788
             +++ YPKR D+WS+Y+D  I+ G +D  R + ERA+   L P KM+ ++KKYL+ E++ 
Sbjct: 1394 DVVTSYPKRIDIWSVYVDMLIKAGLIDSARNVLERAVLQKLKPNKMQVIYKKYLQLEENH 1453

Query: 1789 GEEERIEYVKQKAMEYVES 1807
            G +  +  VKQ+A ++V++
Sbjct: 1454 GTDATVAKVKQQAEQWVKN 1472



 Score =  103 bits (258), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 143/603 (23%), Positives = 261/603 (43%), Gaps = 53/603 (8%)

Query: 10  MKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEI--EANEDNLLPTIFHV 64
           M + GVV E     L I LPG +      AD   A   +    +  + +E + L  +F  
Sbjct: 75  MLVMGVVKETTATALQISLPGRMFARTLVADISEAYTRVAKAAMGGDTSEYHDLSELFQA 134

Query: 65  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
           G++V    ++ +  K   G+  + LSL+ + ++  L  +++++G + +  V  I++HGY+
Sbjct: 135 GRIVYGKAIKTE--KLGTGRISLLLSLKPADVHGNLHHKSIKKGFIFSGAVAEIQEHGYV 192

Query: 125 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 184
           +  G+     F+P     E     +  G L    V+S+         S       +   K
Sbjct: 193 IESGVQGLQAFVP----CEEPAQKLHVGQLAFLKVKSVHHDTHQSTCSCVQVEQDQLRIK 248

Query: 185 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKNDYN 243
                ++D ++PG +V  +V   L++G+  S +   F+  ++  HL N   T    + Y 
Sbjct: 249 SQNETNLDYILPGSIVKFKVAKHLKDGLKGSIMNESFSAYINEHHLTNALDTL---DAYE 305

Query: 244 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH----------VKVGDIYDQSKVVR 293
            ++  NAR+L+V P ++ V LTLN  +    A              +KVG + +++KV+R
Sbjct: 306 LNEDYNARVLYVMPLTKLVYLTLNLDIKSGVAAEKDQDEEEQEEEPLKVGSVVEKAKVLR 365

Query: 294 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEGL 351
           +  G G++L +        +Y +I    +    K E   KY   +  +VRILG+  +E L
Sbjct: 366 LGSG-GVVLLLNKKLKGIISYGSIRANFKGNYDKDEVLSKYGRKTKHKVRILGYDIIESL 424

Query: 352 ATGILKASAFEGLVFTHSDVKPGMVVKG--KVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
                  +     ++   D+  G +V            G  V+  G V  +     + +F
Sbjct: 425 YYCSDDPNVVSEKLYCLEDINAGDLVTAKIFKKDDKIKGWSVRI-GKVNGI-----LEQF 478

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGW 467
            +  P  ++ VG  L  RVL V ++R    V+++   +   + +L+ YA A    +  G 
Sbjct: 479 YLA-PNVRYDVGQSLKCRVLEVNAERKICYVSNRSEYLGKGIKLLTDYASAHVGNVYVGT 537

Query: 468 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
           + + E +   V+F NG++G   R  L      E +S +  GQ  K RI++      +I L
Sbjct: 538 VVRCEDNYVLVKFGNGIKGVLHRQNLK-----ENNSFFE-GQTTKFRILTR--NKDQITL 589

Query: 528 SFMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVIAKGYSK-----GTIPTEHLAD 581
           +      ++ E   V++ + +   ++V +T  A        G  K     G IP   L+D
Sbjct: 590 TLPEDKFQLGEICPVEITNALDAGLEVKITYAADDDEEDEDGNPKLEEFMGLIPLRLLSD 649

Query: 582 HLE 584
           HLE
Sbjct: 650 HLE 652


>gi|66807509|ref|XP_637477.1| hypothetical protein DDB_G0286941 [Dictyostelium discoideum AX4]
 gi|60465898|gb|EAL63968.1| hypothetical protein DDB_G0286941 [Dictyostelium discoideum AX4]
          Length = 804

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 148/561 (26%), Positives = 263/561 (46%), Gaps = 60/561 (10%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLAR---AADALDPILDNEIEANEDNLLPT 60
           +++  GM +     +V E D+ I LP GL+G  +    +D+    +   ++  ++N   T
Sbjct: 160 KDLHTGMVVLATFEQVTEMDITISLPFGLKGYVKFNEISDSFTEWMKETLKREDENEKST 219

Query: 61  --------------IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ 106
                         +F+ GQ++ C ++ L D     G   +  +LR  L+  G S++T  
Sbjct: 220 NFRKMKIISDQVRKMFYKGQMLKCAIVGLTDHHTIEG---LHCTLRPELVNVGSSIDTFS 276

Query: 107 EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKP---GLLLQGVV 159
           E M +   ++SI+D GYI+ FG   + GFL  +N      + S  D      G  ++ ++
Sbjct: 277 EDMTIHGCIESIQDKGYIVSFGSKDYNGFLEFSNTCYYYPDQSSDDQNQLYIGQPIESLI 336

Query: 160 RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 219
           +SID++ K   L+     VS+   K+ + I+++ +  GM+V T+V  +L NG+ L FL +
Sbjct: 337 QSIDKSTKTFKLTISHPLVSRSTIKNSETITMESIKAGMLVETKVLRVLSNGLHLGFLDF 396

Query: 220 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLT-------LNPYLLH 272
           F G + I H QN   T      Y +++ V ARILFVD   + +GL+         PY   
Sbjct: 397 FAGDIFILHSQNPIET------YKENQGVKARILFVDQVHKRIGLSTLGHVLGFKPYPFG 450

Query: 273 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST-----PVSTP----AYVTISDVAE- 322
              P  +V+ G +     + R++  L +++   ST     P+  P     Y+ I ++   
Sbjct: 451 TTKPGQYVESGKL----TIERIE-PLEMIVTTESTVVQSNPMKAPLLLRGYIHIEELESG 505

Query: 323 -EEVRKLEKKYKEGSCV--RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 379
             ++ K   ++K+   +  R R+    HL+G+ T   +    E   ++++D+  GMVV+G
Sbjct: 506 VNDLTKASNQFKKTEPLEKRCRVKHLDHLDGMVTYTARTRELEKKFYSYNDLSCGMVVQG 565

Query: 380 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRIT 437
            +  V +    V+    +  +    HM++  I  P + FKVGA +  R++ V+   KR+ 
Sbjct: 566 VIRYVRADSLEVELATSIHGVVARHHMADTNITDPLEFFKVGATVKVRIINVEPDKKRLQ 625

Query: 438 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 497
           +T KK+L+ S+  I++         I+HG ITK  +   FV FYN   G      L    
Sbjct: 626 LTLKKSLIYSEYPIITDKNTTPIGTISHGIITKTTRFLVFVSFYNNSFGVVEAQNLSNSK 685

Query: 498 GCEPSSMYHVGQVVKCRIMSS 518
                  + VG+ V  + + S
Sbjct: 686 IESVQKQFPVGRTVLAKTLFS 706



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            DLS  M+VQG ++ V +    + L+  +   V   +++D  +  P + F +G  V  R++
Sbjct: 556  DLSCGMVVQGVIRYVRADSLEVELATSIHGVVARHHMADTNITDPLEFFKVGATVKVRII 615

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +VEP  KR+++TLK    ++   SE   I + +   +G I  G I +   + +F++  N 
Sbjct: 616  NVEPDKKRLQLTLK----KSLIYSEYPIITDKNTTPIGTISHGIITKTTRFLVFVSFYN- 670

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
            N  G+     LS   +++++  +  G  V  K L  +  K +  L +
Sbjct: 671  NSFGVVEAQNLSNSKIESVQKQFPVGRTVLAKTLFSESSKSQPGLPL 717


>gi|268572137|ref|XP_002641244.1| Hypothetical protein CBG09112 [Caenorhabditis briggsae]
          Length = 1717

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/266 (37%), Positives = 163/266 (61%), Gaps = 5/266 (1%)

Query: 1545 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1604
            ++ +E  RLVRS PNS+  WI+YM+  +  +D++ AR  AE AL  IN  E  E L +W 
Sbjct: 1444 KSEEEHSRLVRSDPNSAINWIEYMSLFVEKSDLKAARKTAEEALSAINPTESEELLKMWT 1503

Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1664
            AY N+E  YG+     V +VF+RA +  +   ++  L  +Y++  ++  A  +L +M+ K
Sbjct: 1504 AYLNMEVAYGD--STTVDEVFKRACKNANSYTIYRTLAKIYQKFNKHAEAKHILEQMVSK 1561

Query: 1665 FK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVAD 1721
            F+ +  +VW    + L+ Q +Q+G + ++ RAL S P+  +HI+ IS+ A LEFK G A+
Sbjct: 1562 FRANKLEVWTLLAEHLMNQKEQKGARDLLPRALKSAPKAQQHIQLISKFAQLEFKLGDAE 1621

Query: 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            RGR++ EG+++ +PK+TDLW +Y D  ++   ++  R + ERA +  L   KM+ L+KK+
Sbjct: 1622 RGRTLLEGLVTAHPKKTDLWLVYADAALKHLGIEHARKILERACNRELSVHKMRPLYKKW 1681

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVES 1807
            LE E   G+   I+ VK KA  +++S
Sbjct: 1682 LEMESKHGDAASIQLVKSKAESFLQS 1707



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 103/461 (22%), Positives = 193/461 (41%), Gaps = 46/461 (9%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGG----LRGLARAADALDPILDNEIEANEDNLLPTIFHV 64
           G+   GVVAE+ +  +++   G     +     +A+  D   +N+IE      +   F +
Sbjct: 65  GLTGLGVVAELFDDGVLLHTAGTHTVKIHAAEVSANFTDLFNENKIE------IKDAFQI 118

Query: 65  GQLVSCIVL--QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
           GQ+V   V+  +  +DK   G+ K   S   + L K LS   +  G+V+   V S+E+ G
Sbjct: 119 GQMVPFRVISKKSGNDK---GRSKA--SCNPARLNKHLSPNMLVAGLVIHTAVTSLEEKG 173

Query: 123 YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS----DPDTV 178
            IL  GL   TGF+ ++         ++ G  L  VVR +  T +VV ++S    D   +
Sbjct: 174 AILDVGLDQMTGFIEKSQF---PAAGLREGQPL--VVRVLSTTSRVVKVTSFVEQDNLNM 228

Query: 179 SKCVTKDLKGISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 237
           S C     + + ++ L+PG ++        +  GV+++      G +     +   P   
Sbjct: 229 SSC-----EKLQLNHLMPGTILECEPTGDAVTAGVIVNIGNGLKGILP----RRNLPPRL 279

Query: 238 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVGDIYDQSKVV 292
            +N     K + A ++F    S+ + L  +P +     +  R     +++GD    + V 
Sbjct: 280 RENPEKLGKAIRAVVMFCQQNSKVLVLNAHPDIVAVSRVEKRTSFEGIQIGDKVQCTVVD 339

Query: 293 RVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGFRHLEGL 351
            +     +   +P T         +S     E+   +  +Y+ G+    R+ GFR+ +  
Sbjct: 340 VIPTKSIVYFTLPPTDGKKSLVTAVSSRGLLEKPDSVATEYEVGTEKFCRVTGFRYADRA 399

Query: 352 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE--F 409
            T   +       +  + D K G V+  +V  V   G        V+A  P+  +S+   
Sbjct: 400 ITVSTRKDILNQKITKYQDAKCGDVLDARVHHVAKNGVYFSVCNFVQAFAPMSLLSDKSL 459

Query: 410 EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 448
            + K   KF+VG E   RV  +  + K + VT ++ ++  K
Sbjct: 460 NLQKLKAKFQVGTETKCRVWQICDQRKNLIVTCREQIIALK 500


>gi|194909767|ref|XP_001982005.1| GG12355 [Drosophila erecta]
 gi|190656643|gb|EDV53875.1| GG12355 [Drosophila erecta]
          Length = 1433

 Score =  187 bits (474), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 176/303 (58%), Gaps = 8/303 (2%)

Query: 1509 KTIDEKNNRHAKKKEKEE--REQEIRAAEERLLEKDAP-RTPDEFERLVRSSPNSSFVWI 1565
            K   +K    AK+K K E   EQ +R  EER  +  A   T D++ERLV + PN+S  W+
Sbjct: 1129 KNAAKKKRLSAKEKAKAEVKEEQRLREIEERNADPKARLETIDQYERLVIAQPNNSISWL 1188

Query: 1566 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1625
            KY+AF+LS  ++EKAR +A RA+ TI+ RE  E  N+W A  N+E  Y +  ++    V 
Sbjct: 1189 KYIAFLLSNTEIEKARDLARRAISTISFRETQELRNMWSALLNMELVYSDNFDD----VL 1244

Query: 1626 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQ 1684
            + AL   DP +++++++ + +R ++      +L  ++ KFK   +VW    +      + 
Sbjct: 1245 KEALNCNDPLEIYISVVDILKRNKKKDRLSSVLTTILNKFKTELRVWPVAAEAYFWLGKS 1304

Query: 1685 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1744
            + V  ++QRAL  LP  +HI  I   A L  K+   D  +++ + +++ YPKR D+WS+Y
Sbjct: 1305 DQVHNLLQRALRGLPNQEHIPCIVSFAKLYAKHDNNDMAQTLLDDVVTSYPKRIDIWSVY 1364

Query: 1745 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804
            +D  I+ G +D  R + ERA+   L P KM+ ++KKYL+ E++ G +  +  VKQ+A ++
Sbjct: 1365 VDMLIKAGLIDSARNVLERAVLQKLKPNKMQVIYKKYLQLEENHGTDATVAKVKQQAEQW 1424

Query: 1805 VES 1807
            V++
Sbjct: 1425 VKN 1427



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 139/602 (23%), Positives = 262/602 (43%), Gaps = 51/602 (8%)

Query: 10  MKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEI--EANEDNLLPTIFHV 64
           M + GVV E     L I LPG +      AD   A   +    +  + +E + L  +F V
Sbjct: 75  MLVMGVVKEATATALQIALPGRMFARTMVADISEAYTRVAKAAMSGDTSEYHDLTELFQV 134

Query: 65  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
           G++V    ++ +      G+  + LSL+ + ++  L  +++++G + +  V  I++HGY+
Sbjct: 135 GRIVYGKAIKTE--MLGTGRVSLLLSLKPADVHGSLHHKSIKKGFIFSGAVAEIQEHGYV 192

Query: 125 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVVYLSSDPDTVSKCVT 183
           +  G+     F+P    A+   +     L ++ V     + T   V +  D     +   
Sbjct: 193 IESGVQGLQAFVPCEEPAQKLHVGQLAFLKVKNVHHDTHQSTCTCVQVEQD-----QLRI 247

Query: 184 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKNDY 242
           K     ++D ++PG +V  +V   L++G+  S +   F+  ++  HL N   T    + Y
Sbjct: 248 KSQNETNLDYILPGSIVKFKVAKHLKDGLKGSIMNESFSAYINEHHLTNALDTL---DAY 304

Query: 243 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH----------VKVGDIYDQSKVV 292
             ++  NAR+L+V P ++ V LTLN  +    A              +KVG + +++KV+
Sbjct: 305 ELNEDYNARVLYVMPLTKLVYLTLNLDMKTGVAAEKDQNEEEQEEEPLKVGTVVEKAKVL 364

Query: 293 RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEG 350
           R+  G G++L +        +Y +I    +    K E   KY   +  +VRILG+  +E 
Sbjct: 365 RLGSG-GVVLLLNKKLKGIISYGSIRANFKGNYDKDEVLSKYGRKTKHKVRILGYDIIES 423

Query: 351 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
           L       +     ++   D+  G +V  K+   D      +  G    +  +  + E  
Sbjct: 424 LYYCSDDPNVVSEKLYCLEDITAGDLVTAKIFKRDD-----KIKGWSVKIGKVNGILEQF 478

Query: 411 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
            + P  ++ VG  L  RVL V ++R    V+++   +   +  L+  A A    +  G +
Sbjct: 479 YLAPNVRYDVGQSLKCRVLEVNAERKICYVSNRSEYLGKGIKFLTDIASAHVGNVYMGTV 538

Query: 469 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
            + E +   V+F NG++G   R  L      + S+ +  GQ  K RI++      +I L+
Sbjct: 539 VRCEDNYVLVKFGNGIKGVLHRQNL------KESNSFFEGQTAKFRILTR--NKDQITLT 590

Query: 529 FMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVIAKGYSK-----GTIPTEHLADH 582
                 ++ E   V++ + +   ++V +T  A        G  K     G IP   L+DH
Sbjct: 591 LPEDKFQLGEICPVEITNALDAGLEVKITYAADDDEEDEDGNPKLEEFMGLIPLRLLSDH 650

Query: 583 LE 584
           +E
Sbjct: 651 ME 652


>gi|357616535|gb|EHJ70248.1| programmed cell death protein 11 [Danaus plexippus]
          Length = 1195

 Score =  186 bits (471), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/268 (35%), Positives = 163/268 (60%), Gaps = 7/268 (2%)

Query: 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1602
            +PR+ ++FER + + P+ S +WI YMAF L   ++EKAR++A +AL TIN REE EKLN+
Sbjct: 927  SPRSSEQFERALLAQPDCSQLWIAYMAFHLQATEIEKARAVARKALNTINFREEGEKLNV 986

Query: 1603 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1662
            W+A  NLE+ +G   +E   K  + ALQ  D   +H  LL +   T + +    L+  M+
Sbjct: 987  WLALLNLEHRFGT--KETQQKTLEDALQMNDTYSIHSKLLDILVETSKQQELTALVELMM 1044

Query: 1663 KKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            +K+K + + ++   +   K    E  + V+QR ++ L + +H+  + + A++E   GV D
Sbjct: 1045 RKYK-TLESYVACGEACYKSGMVEKARHVMQRGIVVLEKKEHVSMVVKFAVMERARGVPD 1103

Query: 1722 ---RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1778
               R  ++ E +L+ YP+R D+  +Y D   + GDV  +R L ER  +  +P +KMK L+
Sbjct: 1104 GRERCEALLEQMLATYPQRVDVIGVYCDMLCKEGDVQRVRQLMERMTAQKMPARKMKVLY 1163

Query: 1779 KKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            KK++E E+ +G+EE +E V+Q A+++++
Sbjct: 1164 KKWIEVEQKIGDEEHVELVRQNALKFLD 1191



 Score =  143 bits (361), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 145/568 (25%), Positives = 262/568 (46%), Gaps = 66/568 (11%)

Query: 6   ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANEDNL--LPT 60
           +  G+ L G V    E  +++ LP  + G+  A   +DA + IL+  +    D +  LP 
Sbjct: 75  VKEGLLLLGRVRRALETKILVSLPCRMSGVVMACHISDAFNNILEAYVNDKVDQVRELPQ 134

Query: 61  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE----TVQEGMVLTAYVK 116
           +F +GQ V+  VL+  D+           SL L+++ + ++ +     + +G ++ A V 
Sbjct: 135 MFRLGQYVAVKVLEASDN-----------SLTLTMMPQDINSDRKATDLHKGALIQAAVT 183

Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 176
           SIEDHGY++  G+P+   FL ++    NS +++  G+L    ++S+     VV LSS+  
Sbjct: 184 SIEDHGYVMDIGIPNTRAFLAKD--TANSDMELDIGMLTWVTIKSLSADSNVVTLSSELG 241

Query: 177 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV---MLSFLTYFTGTVDIFHLQNTF 233
            + +   ++  G+    + PG  V   V   L+NG+   +L+    +     I  ++   
Sbjct: 242 ALQRSFQRN-PGV----IYPGTAVDFTVHKALDNGIEGHILNNQLAYIQRHQIDTVKGKK 296

Query: 234 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV---GDIYDQSK 290
           P           +K+ AR+L+  P  +   LT+      ++   +  ++   GD+ +++K
Sbjct: 297 PALG--------QKIRARLLYSVPPQQTPFLTMREIFDSSKTNLNEEQIHQDGDVIEEAK 348

Query: 291 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 350
           V++   G  + L +        +     D  + +   L K Y  GS  RVR+L +     
Sbjct: 349 VLK-SWGRTVFLRLSDRSTGFLSLRRGHDFNDHD--DLAKSYPIGSTHRVRVLCY----N 401

Query: 351 LATGILKASAFEGLV----FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 406
           L+  +   S    L+    F  S +  G +V G V  V      V     +    P  HM
Sbjct: 402 LSDYVYSVSDDPALLRQKYFNISQLSVGELVSGTVTEVADQHLRVAV-DRISGYVPRAHM 460

Query: 407 SEFEIV----KP-----GKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSY 455
           +E  +     KP      KK+KVG E+  RVL V   +  + +T K +L+   L +L  Y
Sbjct: 461 TETGVFIDPKKPRNSNVSKKYKVGQEVQARVLVVDETKNSVVLTLKPSLLAEDLPLLMDY 520

Query: 456 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 515
           +EA    +  G I+ I KH   V F+N V  + P   +G  PG + +  +H GQ+VKC I
Sbjct: 521 SEAHVGKMYTGVISHI-KHYLLVSFFNNVVAYVPSRLVGAQPG-DLADAFHTGQIVKCTI 578

Query: 516 MSSIPASRRINLSFMMKPTRVSEDDLVK 543
           MS  P +++++ S +  P + +++++ K
Sbjct: 579 MSVKPEAKKMSGSLVDAPFQDADNEVKK 606



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 29/194 (14%)

Query: 934  SSYDVGSLVQAEITEIKPLELRLKFG--IGFHGRIHITEVN---DDKSNVVENLFSNFKI 988
            S   VG LV   +TE+    LR+      G+  R H+TE     D K     N+   +K+
Sbjct: 424  SQLSVGELVSGTVTEVADQHLRVAVDRISGYVPRAHMTETGVFIDPKKPRNSNVSKKYKV 483

Query: 989  GQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK 1048
            GQ V AR++      + K S +  L++KPS+L        LL +  +  +G+  TG +  
Sbjct: 484  GQEVQARVLVVD---ETKNSVV--LTLKPSLLAED---LPLLMDYSEAHVGKMYTGVISH 535

Query: 1049 VDNEWALLTISRHLKAQLFILDSAYEPSEL-----QEFQRRFHIGKAVTGHVLSINKEKK 1103
                     I  +L    F    AY PS L      +    FH G+ V   ++S+  E K
Sbjct: 536  ---------IKHYLLVSFFNNVVAYVPSRLVGAQPGDLADAFHTGQIVKCTIMSVKPEAK 586

Query: 1104 LL--RLVLRPFQDG 1115
             +   LV  PFQD 
Sbjct: 587  KMSGSLVDAPFQDA 600



 Score = 48.1 bits (113), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 13/170 (7%)

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFD 600
           +G LVSG V  V    + V V       G +P  H+ +    ++      S +   Y+  
Sbjct: 428 VGELVSGTVTEVADQHLRVAV---DRISGYVPRAHMTETGVFIDPKKPRNSNVSKKYKVG 484

Query: 601 Q-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
           Q     +LV+D   ++++L+ K SL+     L  D S  H   +  G + +I +    V 
Sbjct: 485 QEVQARVLVVDETKNSVVLTLKPSLLAEDLPLLMDYSEAHVGKMYTGVISHI-KHYLLVS 543

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
           F   +  + P S+ V  Q  DL+  ++ GQ V+  I+ V  E  +++ SL
Sbjct: 544 FFNNVVAYVP-SRLVGAQPGDLADAFHTGQIVKCTIMSVKPEAKKMSGSL 592


>gi|183232667|ref|XP_654947.2| rRNA biogenesis protein RRP5 [Entamoeba histolytica HM-1:IMSS]
 gi|169801940|gb|EAL49568.2| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica
            HM-1:IMSS]
          Length = 1710

 Score =  184 bits (467), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1548 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1607
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 1451 DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 1510

Query: 1608 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1667
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 1511 QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 1568

Query: 1668 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 1569 SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 1628

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1786
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 1629 FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 1688

Query: 1787 SVGEEERIEYVKQKAMEYVES 1807
              G+E R E+V+  A  +V +
Sbjct: 1689 KYGDESRQEHVRDIAKSFVST 1709



 Score =  119 bits (298), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 248/1170 (21%), Positives = 479/1170 (40%), Gaps = 171/1170 (14%)

Query: 291  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 350
            + ++D  +G+   I  T      +++   + +E    + K++K GS  + R++ +   +G
Sbjct: 318  ISKIDENVGI---IGETEDKEEVFLSKKQIKDESCSDIPKEFKIGSTHKGRVMYYSAFDG 374

Query: 351  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
                  + S       +  D+K GM+++G +  V+  G IV+    +   C   +  +  
Sbjct: 375  YCGITTRESILSDKYQSIFDIKSGMIIEGTIKEVNEKGIIVKIGEKIYGFCDKINSGDIP 434

Query: 411  IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
            I      FK   +  FRVL V ++   I +THK+TL+K+   I+++  E     IT G +
Sbjct: 435  IEDLQSVFKKEQKSKFRVLTVNNRNNSIYLTHKRTLMKATTPIITTIEETELNTITFGTV 494

Query: 469  TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
            T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 495  TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKVRIISFDKQLLLCSL 550

Query: 528  SFMMK---PTRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLAD 581
            +   +   P +  +     ++G +  G+V V     +++  I  G  +    +P   + D
Sbjct: 551  NLFPEENVPEKYEDVSRHFEVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVID 609

Query: 582  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 641
              E   + K +I+ G    + L+L N+   ++++ K SLI+  +++    S        +
Sbjct: 610  GDEGQDIPK-MIRNGTILKECLLLKNQMGQMVITTKKSLISLRKKIGKFNSKEEMTVGKY 668

Query: 642  -GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 700
             GYV  I    CF+ F   +T    R    D     + +   VGQ+V   +        +
Sbjct: 669  IGYVSKIKGKYCFISFYNGVTILCYRMNVSD-TNLPIEEVLEVGQTVYGYL------NKK 721

Query: 701  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 760
               SLK+S   S    FM           +L+  +    E K+      GS ++ ++ + 
Sbjct: 722  GIFSLKESSVGSIKEEFM-----------LLRVERD--VEPKY------GSQLKIEIKDI 762

Query: 761  NDFGVVVSFEEHSDVYGFITHHQLAGATVE--SGSVIQAAILDVAKAERLVDLSLKTVFI 818
              +G++   +E  +   FI    + G   E   G+ ++  ++ V K  +++D   + +  
Sbjct: 763  KPYGIIGKNKEREETI-FIPKTGIEGDIKEMNKGNTMKCIVIGVDKERKMIDCIQEKMIT 821

Query: 819  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS 878
             +  E N   + +                     V + KE Y V  L E N  I + +  
Sbjct: 822  KQHIENNKIYKGK---------------------VLLNKEEYCV-CLVEGN--IVFVNKI 857

Query: 879  DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK---RAKKKSS 935
              N  K+  K+ +  + +I   M    +   G             T +SK    + K ++
Sbjct: 858  RMNGGKYTVKEEV--EIIIGKEMEGYQNIYEG-------------TINSKPIVYSIKNNT 902

Query: 936  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 995
             ++G  ++  ++        L  G G  GR+H  ++N  K   +      + IG  V   
Sbjct: 903  INIGEKIEGVVSYTNESISYLNLGKGITGRLH--KINSTKKIEIGEKIECYIIGIQVKGE 960

Query: 996  IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1055
            II +  K    +  + ELS+K       E G+     E  +  G+ + G + +   +  +
Sbjct: 961  IIKEKGKEIEGRIEIVELSMK-------EEGNM----EEKIQEGEEIEGIISREMKDGYI 1009

Query: 1056 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK--AVTGHVLSINKEKKLLRLVLRPFQ 1113
            ++ +  LK +L  ++      E+   ++ +++G    V G+    +KE   L        
Sbjct: 1010 ISFNSILKGKLNYIEIGDNIEEININKKEYNVGDKIKVKGYY---SKENIYL-------- 1058

Query: 1114 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1173
              I DK  +I          EG+I+ G +    +    + V I  +  G +H+ ++ N  
Sbjct: 1059 --IKDKKEEIK---------EGEIIVGEVIGNNTKELKIKVLIKGNRIGYIHYCDISN-- 1105

Query: 1174 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVL----EISRTVRGTFHVELSLRSSLDGMSST 1229
            V +P          P      G+++   VL    EI  ++R  +     L+ + D +   
Sbjct: 1106 VFNPF---------PRDYLQNGKYINMYVLSNKPEILCSMRKEY-----LKEAYDEIFPP 1151

Query: 1230 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY-VKNVTSKGCFIMLSRKLDAKVLLSNLSD 1288
                + T + T        + +    I+ GY +K+   +G  +M+SR +   V    L D
Sbjct: 1152 LIGGVQTRIVTK-------DTIKEGEILTGYIIKSSEEEGVDVMVSRDVTIHVAPGELLD 1204

Query: 1289 G---YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1345
                + +   + F I +LV   ++  E L    E TLK S           ++    V  
Sbjct: 1205 NTSYHGKDFSRIFCIQRLVKVSIIDKEGL----EGTLKQSVIYPGIIKYFKDIKENIVTK 1260

Query: 1346 IVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--DNIETIYRAGEKVKVKILKVD 1403
             VI  I    S GLF+   N+N+ GLCH S++ +  +    +E  ++  + +  K++ +D
Sbjct: 1261 CVIVNIT---SEGLFLRFFNSNIRGLCHCSKIEDKKLTKKEMEKRFKIKDVIMAKVVHID 1317

Query: 1404 KEKRRISLGMKSSYFKNDADNLQMSSEEES 1433
            K+K R++  +K      D   ++M  EEE+
Sbjct: 1318 KKKHRVNFSIKPE----DVGEVEMKDEEET 1343


>gi|396476776|ref|XP_003840117.1| similar to rRNA biogenesis protein RRP5 [Leptosphaeria maculans JN3]
 gi|312216688|emb|CBX96638.1| similar to rRNA biogenesis protein RRP5 [Leptosphaeria maculans JN3]
          Length = 1787

 Score =  184 bits (467), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 169/283 (59%), Gaps = 13/283 (4%)

Query: 1535 EERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1592
            E+R  + DA  P++  ++ERL+   PNS+ +W++YM F   + ++EKAR IA RAL TIN
Sbjct: 1499 EDRTGDLDAFGPQSIADYERLLLGQPNSAELWVRYMVFQRELGEIEKARQIARRALATIN 1558

Query: 1593 IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1652
             REE EKL++W A  +LEN++    ++A+ ++F+ A Q+ D ++VH  ++ +Y  + + +
Sbjct: 1559 PREEKEKLDVWTALLHLENDFAT--DDAMEQIFKEACQHNDSREVHERMIKIYISSGKLE 1616

Query: 1653 LADELLYKMIKK--FKHSCKVWLRRVQRLLK----QQQEGVQAVVQRALLSLPRHKHIKF 1706
             AD L   M+K   F    + WL     L+           +A++QRA  S+P  +H   
Sbjct: 1617 KADSLYQLMVKNKSFTPDPQFWLSYAAFLMDVLSPPSPTRARALLQRATQSVPSREHRYL 1676

Query: 1707 ISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1764
              + A LEFK  NG A+RGR++FEG++S YPK+ D+W +YL  E+  G  + +R LFER 
Sbjct: 1677 TQKFAALEFKSPNGDAERGRTIFEGLVSTYPKKGDVWDMYLSLEMSHGSSENVRNLFER- 1735

Query: 1765 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            ++ +   K+ + +F K+  +E  VG ++ +E VK    ++ E+
Sbjct: 1736 MAKTTKKKRAQTVFAKWAVWEAGVGNKKGVERVKALEEQWREA 1778



 Score =  182 bits (462), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 199/757 (26%), Positives = 331/757 (43%), Gaps = 61/757 (8%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL--------DNEIEA 52
           + ++ G  + G+V EV ++D+V+ LP  L G   L   +D L+  L        D E  +
Sbjct: 145 KRLTPGTMVLGLVTEVTQQDIVLALPNNLVGYVPLTAISDKLNERLEQLMKDDTDKEDGS 204

Query: 53  NEDNL----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEG 108
           ++ N     L  +F VGQ +   +   +++     KR + LS+   L+ KGL+   +   
Sbjct: 205 DDGNFEDVDLQDMFSVGQYLRACITSTNEETARARKR-LELSIDPKLVNKGLTKRKLPVN 263

Query: 109 MVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRT 165
            ++ A V S EDHG ++  GL      GFLP+  L        V+ G +   +    +  
Sbjct: 264 SMMQASVVSNEDHGLVMDLGLGDTKVKGFLPKGELGPKVQHAKVQEGAVFMCLATGTNPD 323

Query: 166 RKVVYLSSDPDTVSKCVTKD--LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGT 223
            ++V LS+D          +  +   +ID+ +PG  V   +     + +    L     T
Sbjct: 324 GRIVKLSADHAKAGNLAKGNTLIDAPTIDVFLPGTAVDVLITDSTSSTITGKILGLIDCT 383

Query: 224 VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL---------- 271
            D +H   T    +    Y    KV  RILF  P S  R VG++L  +++          
Sbjct: 384 ADAYHSGATERGADVSQKYKLGSKVKGRILFTCPDSEPRKVGVSLLDHVVSLSTRMSGKP 443

Query: 272 HNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
             R PP  +  V  I + +KVV+V   LG   D+    V    +  IS +A+E+V  L +
Sbjct: 444 KERKPPLELLPVSTIIENAKVVKVAPALGAFFDLGVRDVV--GFSHISRLADEKVEFLSE 501

Query: 331 K---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVD 385
               +K GS  + RI+G+  ++GL    L+    +       D+K G VVKGKV  +  D
Sbjct: 502 DSGAFKLGSTHKARIIGYNDMDGLFQLSLEQKILDQPFLRIEDIKAGQVVKGKVHKLIAD 561

Query: 386 SFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTH 440
             GA   +V    G+  L    H+++  +  P +KF+ G  +  RVL  +  R  I +T 
Sbjct: 562 KKGATAVLVHLADGITGLVSELHLADVRLQHPERKFREGVPVKARVLYTEPARHQIHLTL 621

Query: 441 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
           KKTLV S +   + Y    +     G I  + ++G  VRFY  V+ + P +E+      +
Sbjct: 622 KKTLVNSDINPWTDYNMIKEGAAGPGIIANVRRNGATVRFYGTVKAWLPVAEMSEAFIED 681

Query: 501 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVV 555
            +  +  GQVV  R +S  P  R++ +S    P  +  +     + +  G++V G V   
Sbjct: 682 ATKHFSAGQVVNVRAISVNPEERQLLVS-CKDPAAIDTNKEAAFNALNPGAIVKGTVLEK 740

Query: 556 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLDN--ESSN 611
           T  AV +  +  G  KG +   HL D  E   +  MK  I+ G   + L+VL    +S  
Sbjct: 741 TDEAVTLD-LGNGV-KGLLRIGHLTDGSEKKDISTMKK-IRVGGVLEDLVVLAKHVKSKT 797

Query: 612 LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
           + +S K +L   AQ  +L      +     VHG+V  I+    F+     ++G   +S+ 
Sbjct: 798 VTVSNKPTLRKDAQASKLAISVEDLQAGETVHGFVRGILPDKVFIELGNGISGPVFKSQL 857

Query: 670 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
            +   +  +      QSV   +  V+   G   LS+K
Sbjct: 858 TEEMLSAPNFGLRKDQSVTVRVSHVDPAKGFFWLSMK 894



 Score = 70.9 bits (172), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 156/374 (41%), Gaps = 47/374 (12%)

Query: 189 ISIDLLVPGMMVSTRVQSILEN-----GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 243
           + I+ +  G +V  +V  ++ +      V++      TG V   HL +     + +  + 
Sbjct: 540 LRIEDIKAGQVVKGKVHKLIADKKGATAVLVHLADGITGLVSELHLADVR-LQHPERKFR 598

Query: 244 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 303
           +   V AR+L+ +P    + LTL   L+++   P         D + +     G G++ +
Sbjct: 599 EGVPVKARVLYTEPARHQIHLTLKKTLVNSDINP-------WTDYNMIKEGAAGPGIIAN 651

Query: 304 IPSTPVST------PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHL----- 348
           +     +        A++ +++++E  +    K +  G  V VR +      R L     
Sbjct: 652 VRRNGATVRFYGTVKAWLPVAEMSEAFIEDATKHFSAGQVVNVRAISVNPEERQLLVSCK 711

Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-- 406
           +  A    K +AF  L        PG +VKG V+        +    GVK L  + H+  
Sbjct: 712 DPAAIDTNKEAAFNAL-------NPGAIVKGTVLEKTDEAVTLDLGNGVKGLLRIGHLTD 764

Query: 407 -SEFEIVKPGKKFKVGA---ELVFRVLGVKSKRITVTHKKTLVK----SKLAILSSYAEA 458
            SE + +   KK +VG    +LV     VKSK +TV++K TL K    SKLAI     +A
Sbjct: 765 GSEKKDISTMKKIRVGGVLEDLVVLAKHVKSKTVTVSNKPTLRKDAQASKLAISVEDLQA 824

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            + +  HG++  I     F+   NG+ G   +S+L  +    P+      Q V  R+   
Sbjct: 825 GETV--HGFVRGILPDKVFIELGNGISGPVFKSQLTEEMLSAPNFGLRKDQSVTVRVSHV 882

Query: 519 IPASRRINLSFMMK 532
            PA     LS  ++
Sbjct: 883 DPAKGFFWLSMKLE 896



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 133/317 (41%), Gaps = 24/317 (7%)

Query: 323  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
            E++  +E+ +  GS ++V +       G    +  AS   G   T  D+K G V+  +V 
Sbjct: 1075 EQLSSVEENFPVGSALKVTVKTVDVAAG-RLDLTAASTVTGKALTLQDLKVGYVLPARVT 1133

Query: 383  AVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVK--SKRITVT 439
             +     +VQ    + A   L  ++ +++  KP  +FKVG  L   ++ +   +K+++++
Sbjct: 1134 KLHDASIVVQINETIAAPIFLEQLADDYDKAKPS-EFKVGDILRVCIIDIDLPNKKLSLS 1192

Query: 440  HKKTLVKSKLAILSSYAEATDRL------ITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
             + + V S    +    E  DR       +  G+I  +  +G +VR    V+ +   S L
Sbjct: 1193 ARPSRVLSSTLPIKD-PEIKDRAQLKVNDVVRGFIKHVADNGVYVRLGPHVEAYVRVSHL 1251

Query: 494  GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSEDDLVKLG 545
                  +  S +HV Q+V  +++S+ P  R   LS           +P   S    +K G
Sbjct: 1252 SDAYIKDWKSAFHVDQLVTGKVISNKPDQRNPQLSLKTSIIQADYSEPIEFSN---LKAG 1308

Query: 546  SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLV 604
             +V+  V  V    V + V       G      LAD       +K + K G     ++L 
Sbjct: 1309 QIVTATVRHVEDFGVFLVVANSNNVSGLCHVSQLADTPVDKEKVKEMYKKGDAVKAKVLK 1368

Query: 605  LDNESSNLLLSAKYSLI 621
            +D+ +  +  + KYS +
Sbjct: 1369 VDSNTRKISFTLKYSQV 1385



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 115/512 (22%), Positives = 214/512 (41%), Gaps = 73/512 (14%)

Query: 944  AEITEIKP-----LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
            A++ ++ P      +L ++  +GF    HI+ + D+K   +      FK+G T  ARII 
Sbjct: 462  AKVVKVAPALGAFFDLGVRDVVGFS---HISRLADEKVEFLSEDSGAFKLGSTHKARIIG 518

Query: 999  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK-VDNEWALLT 1057
             +   DM    L++LS++  +L       +      D+  GQ V G V+K + ++     
Sbjct: 519  YN---DMDG--LFQLSLEQKIL------DQPFLRIEDIKAGQVVKGKVHKLIADKKGATA 567

Query: 1058 ISRHLKAQLFILDSAYEPSE--LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1115
            +  HL   +  L S    ++  LQ  +R+F  G  V   VL     +  + L L+     
Sbjct: 568  VLVHLADGITGLVSELHLADVRLQHPERKFREGVPVKARVLYTEPARHQIHLTLK----- 622

Query: 1116 ISDKTVDISNDNMQT---FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1172
               KT+  S+ N  T    I EG    G I+ +     G  V+     YG V       +
Sbjct: 623  ---KTLVNSDINPWTDYNMIKEGAAGPGIIANVRR--NGATVR----FYGTVKAW----L 669

Query: 1173 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1232
             V++    + E   D    +  GQ V  + + ++   R               +S  + +
Sbjct: 670  PVAEMSEAFIE---DATKHFSAGQVVNVRAISVNPEERQLL------------VSCKDPA 714

Query: 1233 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1292
             + T+ +           L+P  IV+G V   T +   + L   +   + + +L+DG  +
Sbjct: 715  AIDTNKEA------AFNALNPGAIVKGTVLEKTDEAVTLDLGNGVKGLLRIGHLTDGSEK 768

Query: 1293 ---SPEKEFPIGKLVAGR-VLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIV 1347
               S  K+  +G ++    VL+    SK V V+ K +  + A  S++  ++ +L  G+ V
Sbjct: 769  KDISTMKKIRVGGVLEDLVVLAKHVKSKTVTVSNKPTLRKDAQASKLAISVEDLQAGETV 828

Query: 1348 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
             G ++ +    +FI + N  + G    S+L+E+ +       R  + V V++  VD  K 
Sbjct: 829  HGFVRGILPDKVFIELGN-GISGPVFKSQLTEEMLSAPNFGLRKDQSVTVRVSHVDPAKG 887

Query: 1408 RISLGMKSSYFKNDADNLQMSSEEESDEAIEE 1439
               L MK    + +AD +   + + + + +EE
Sbjct: 888  FFWLSMK---LEANADEVAPKTTDNAGQPLEE 916



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 30/233 (12%)

Query: 499 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK----PTRVSEDDLVKLGSLVSG---- 550
            E S  + +G   K RI+          LS   K    P    ED  +K G +V G    
Sbjct: 500 SEDSGAFKLGSTHKARIIGYNDMDGLFQLSLEQKILDQPFLRIED--IKAGQVVKGKVHK 557

Query: 551 -VVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQ------- 601
            + D     AV+V+ +A G + G +   HLAD  L+H         P  +F +       
Sbjct: 558 LIADKKGATAVLVH-LADGIT-GLVSELHLADVRLQH---------PERKFREGVPVKAR 606

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L  +     + L+ K +L+NS     +D + I   +   G + N+   G  VRF G + 
Sbjct: 607 VLYTEPARHQIHLTLKKTLVNSDINPWTDYNMIKEGAAGPGIIANVRRNGATVRFYGTVK 666

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            + P ++  +    D +K +  GQ V    + VN E  ++ +S K      T+
Sbjct: 667 AWLPVAEMSEAFIEDATKHFSAGQVVNVRAISVNPEERQLLVSCKDPAAIDTN 719



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 88/228 (38%), Gaps = 40/228 (17%)

Query: 602  LLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVR 655
            ++ +D  +  L LSA+ S + S+  LP       D + +  N VV G++ ++ + G +VR
Sbjct: 1179 IIDIDLPNKKLSLSARPSRVLSST-LPIKDPEIKDRAQLKVNDVVRGFIKHVADNGVYVR 1237

Query: 656  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
                +  +   S   D    D    ++V Q V   ++    +     LSLK         
Sbjct: 1238 LGPHVEAYVRVSHLSDAYIKDWKSAFHVDQLVTGKVISNKPDQRNPQLSLK--------T 1289

Query: 716  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
            S +Q  +   E I          S LK       G ++   V    DFGV +     ++V
Sbjct: 1290 SIIQADY--SEPIEF--------SNLK------AGQIVTATVRHVEDFGVFLVVANSNNV 1333

Query: 776  YGFITHHQLAGATVE---------SGSVIQAAILDVAKAERLVDLSLK 814
             G     QLA   V+          G  ++A +L V    R +  +LK
Sbjct: 1334 SGLCHVSQLADTPVDKEKVKEMYKKGDAVKAKVLKVDSNTRKISFTLK 1381


>gi|429860182|gb|ELA34927.1| rRNA biogenesis protein [Colletotrichum gloeosporioides Nara gc5]
          Length = 1773

 Score =  184 bits (466), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 199/747 (26%), Positives = 334/747 (44%), Gaps = 59/747 (7%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL-------- 57
           G  + G ++ ++   L I LP  L G   +A  +D ++  LD  +E +++          
Sbjct: 147 GSLVLGQISHIDPVQLTIALPNNLTGHVSIASISDTINAKLDGAMETSDNESEDEDEEDD 206

Query: 58  --LPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 114
             L ++F +GQ V   VL   DD      KR+I LSLR      GLS + V   + L A 
Sbjct: 207 VDLKSMFRIGQYVRAYVLSTSDDTAGGKAKRRIELSLRPVDTNTGLSSDDVVANVTLMAS 266

Query: 115 VKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVY 170
           + S++DHGY ++ G+     GFL +  +    G+D   ++PG +   VV+ +  T  VV 
Sbjct: 267 IASVQDHGYEMNLGIDGDLKGFLSKKEVG--PGMDEASLRPGAVCLCVVKGV--TGIVVQ 322

Query: 171 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
           LS+DP  +           +I+  +PG +    +  + + G+    L +   T D+ H  
Sbjct: 323 LSADPQKLGNTSNVASNAPTINSFLPGTLADVLLTEVTKRGLQGKLLGHLPVTADLIHSG 382

Query: 231 NTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLH-----------NRAPP 277
                 +    Y    +V ARI+   P ++   +G++L P++ +            +AP 
Sbjct: 383 VGPDGVDLDAKYKVGGRVKARIICNFPAAKEPKLGISLLPHINNLQSKSSGKGSRAKAPL 442

Query: 278 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKE 334
             + +    +   V +V+  +GL +D     +S   +V IS V + +V  L +    +K 
Sbjct: 443 DLLPIAAFAETCTVRQVEPDIGLYVDTGVPGIS--GFVHISRVKDGKVDALYESSGPFKV 500

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GA 389
           G+  R R++G+  L+G+     + S  +       DV  G +V GK+    I  +   G 
Sbjct: 501 GTTHRGRVVGYSPLDGMFLLSFEKSVLDQAFIRLEDVPIGQIVSGKIEKMIIGENGVSGL 560

Query: 390 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS 447
           IV+    +       H ++ ++  P KKF+ G E+  RVL V+ ++  + +T KK+LV S
Sbjct: 561 IVKLAENIAGYVHESHFADVKLQHPEKKFREGMEVKARVLSVRLRKHQLRLTLKKSLVSS 620

Query: 448 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 507
              I+ +Y +    + T G IT +   G  + F+  V+GF P S++      +P   +  
Sbjct: 621 DSTIIKNYDDVEVDMQTPGTITSVSADGARLEFFGDVRGFLPVSQMSEAYIKDPREHFRA 680

Query: 508 GQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVV 562
           GQVV   ++S +P  RR+ +S    P+    D       +K+G LVS  V   T + V V
Sbjct: 681 GQVVSVHVLSVVPEERRLVVS-CKDPSAFGLDKQAALKALKIGDLVSAKVSQKTEDEVFV 739

Query: 563 YVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYS 619
            +   G  K  I   HL D     T      I+ G     L+VLD NE    ++L+ K S
Sbjct: 740 DLEESGL-KAIIRVGHLTDKSASKTEAALKRIRVGQTLTDLMVLDKNERRRAVILTQKPS 798

Query: 620 LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
            I +++  +L S    +   +V   YV  I     +V+F G LT   P+SK     +   
Sbjct: 799 FIEASKNGKLLSSYDDVTVGAVAPAYVREIGPFAVYVQFGGNLTAILPKSKLDREVQEKA 858

Query: 678 SKTYYVGQSVRSNILDVNSETGRITLS 704
           S      QSV   I+  N E  RI ++
Sbjct: 859 SFGMRKHQSVEVKIVSSNPEQKRIIVA 885



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/263 (38%), Positives = 161/263 (61%), Gaps = 10/263 (3%)

Query: 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1598
            L+   P+T  ++ERL+   P+SS +WI+YMA  + ++++ KAR IAERA++TINIRE+ E
Sbjct: 1482 LDAHGPQTATDYERLLLGQPDSSQLWIEYMALQMKVSELSKAREIAERAIKTINIREQTE 1541

Query: 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1658
            KLN+W+AY NLE  YG   + +  +VF+RA QY D ++VH  L  +Y ++ + K AD++ 
Sbjct: 1542 KLNVWIAYLNLEVAYGT--KTSTDEVFKRACQYNDEQEVHERLASIYIQSGKLKQADDVF 1599

Query: 1659 YKMIKKFK-HSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1715
              ++ KFK  S  VW+     L     + +  +A++ RA  +L +    + +++ A LEF
Sbjct: 1600 QSLVNKFKSKSPDVWVNYAHFLHVTMNEPDRARALLPRATQALEQRHTAQLMARFAALEF 1659

Query: 1716 K--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD--LIRGLFERAI-SLSLP 1770
            K  NG A+RGR+ FE IL+ +PKR D W   +D E+   + D   IR +FER   +  L 
Sbjct: 1660 KSPNGDAERGRTTFETILATWPKRFDFWGQLIDLELSAAEPDATAIRDVFERGTKAKGLK 1719

Query: 1771 PKKMKFLFKKYLEYEKSVGEEER 1793
             KK +  FK++ ++E+ +  + R
Sbjct: 1720 AKKAEKWFKRWADWEEKLDPKGR 1742



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 6/165 (3%)

Query: 374  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
            G +V+G V  V   G  VQ  G + AL  + ++S+  I      F+V   +  RV+ + +
Sbjct: 1205 GDIVRGFVKNVADNGVFVQLGGSISALVKIANLSDRYIKDWKGSFQVDQLVKGRVISIDT 1264

Query: 434  --KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQGFAP 489
               +I ++ K ++V++      ++ +  +  I  G + K+E+ G F+   N   V G   
Sbjct: 1265 AINKIELSLKASVVENDYTPPITWKDIKESQIVTGKVRKVEEFGAFIVVDNSTNVSGLCH 1324

Query: 490  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
            RSE+   P  +   +Y+ G VVK +++S     RRI  +F +KP+
Sbjct: 1325 RSEMAEKPVEDARKLYNEGDVVKAKVISIDDEKRRI--TFSLKPS 1367



 Score = 43.9 bits (102), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 114/277 (41%), Gaps = 44/277 (15%)

Query: 12   LWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCI 71
            L G V +VN++ L+I L   + G     D  D       + +E N L   F+ G+++   
Sbjct: 1114 LPGRVTKVNDRQLMIKLSDAVSGPVHLVDLCD-------DYDEANTLK--FNKGEIIRVS 1164

Query: 72   VLQLDDDKKEIGKRKIWLSLRLSLLYKGLS---------LETVQEGMVLTAYVKSIEDHG 122
            V+++D   K     ++ LS R S +    S         L  +  G ++  +VK++ D+G
Sbjct: 1165 VVEVDKSNK-----RLRLSTRPSRILSSTSPVADREITSLAQLTSGDIVRGFVKNVADNG 1219

Query: 123  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL----LLQGVVRSIDRTRKVVYLSSDPDTV 178
              +  G  S +  +   NL++    D K       L++G V SID     + LS     V
Sbjct: 1220 VFVQLG-GSISALVKIANLSDRYIKDWKGSFQVDQLVKGRVISIDTAINKIELSLKASVV 1278

Query: 179  SKCVT-----KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
                T     KD+K   I        V+ +V+ + E G  +  +   T    + H     
Sbjct: 1279 ENDYTPPITWKDIKESQI--------VTGKVRKVEEFGAFI-VVDNSTNVSGLCHRSEMA 1329

Query: 234  --PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 268
              P  + +  YN+   V A+++ +D   R +  +L P
Sbjct: 1330 EKPVEDARKLYNEGDVVKAKVISIDDEKRRITFSLKP 1366



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 114/268 (42%), Gaps = 16/268 (5%)

Query: 189  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 248
            I  D L    ++  RV  + +  +M+      +G V +  L + +   N    +N+ + +
Sbjct: 1103 IKWDSLKKNQILPGRVTKVNDRQLMIKLSDAVSGPVHLVDLCDDYDEANTLK-FNKGEII 1161

Query: 249  NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 308
               ++ VD +++ + L+  P  + +   P  V   +I   +++   D   G + ++    
Sbjct: 1162 RVSVVEVDKSNKRLRLSTRPSRILSSTSP--VADREITSLAQLTSGDIVRGFVKNVADNG 1219

Query: 309  V------STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 362
            V      S  A V I+++++  ++  +  ++    V+ R++            LKAS  E
Sbjct: 1220 VFVQLGGSISALVKIANLSDRYIKDWKGSFQVDQLVKGRVISIDTAINKIELSLKASVVE 1279

Query: 363  G---LVFTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKK 417
                   T  D+K   +V GKV  V+ FGA  +V     V  LC    M+E  +    K 
Sbjct: 1280 NDYTPPITWKDIKESQIVTGKVRKVEEFGAFIVVDNSTNVSGLCHRSEMAEKPVEDARKL 1339

Query: 418  FKVGAELVFRVLGV--KSKRITVTHKKT 443
            +  G  +  +V+ +  + +RIT + K +
Sbjct: 1340 YNEGDVVKAKVISIDDEKRRITFSLKPS 1367


>gi|167386167|ref|XP_001737645.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165899481|gb|EDR26067.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 1725

 Score =  183 bits (465), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 158/259 (61%), Gaps = 3/259 (1%)

Query: 1548 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1607
            DE ++ V   P++S  WIK M   +   ++++AR + + A++TIN R+  EKLNIW A  
Sbjct: 1466 DECQKGVEKEPDNSTEWIKLMQCFIQRKEIDEARKVGKTAIETINFRKLEEKLNIWKALM 1525

Query: 1608 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1667
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 1526 QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 1583

Query: 1668 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 1584 SCKVYKKYCNFLMRNNREEEIKNTISKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 1643

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1786
            FE IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    KYLE+E+
Sbjct: 1644 FEDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 1703

Query: 1787 SVGEEERIEYVKQKAMEYV 1805
              G+E + E+V+  A  +V
Sbjct: 1704 KYGDESKQEHVRDIAKSFV 1722



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 131/588 (22%), Positives = 252/588 (42%), Gaps = 50/588 (8%)

Query: 291 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 350
           + ++D  +G+   I  T      +++   + +E    + K++K GS  + RI+ +   +G
Sbjct: 328 ITKIDENVGI---IGETEDKEEVFLSKKQIKDEYCLDIPKEFKIGSIHKGRIMYYSAFDG 384

Query: 351 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
                 + S       + +D+K GM+++G +  ++  G  V+    +   C   +  +  
Sbjct: 385 YCGITTRESILSDKYQSINDIKSGMIIEGIIKEINENGINVKIGEKIYGFCDKINSGDIP 444

Query: 411 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
           I      FK   +  FRVL V ++   I +THK+TL+K    I+++  E     IT G +
Sbjct: 445 IEDLKSVFKKDQKSKFRVLTVNNRNNSIYLTHKRTLMKLTTPIITNIEETELNTITFGIV 504

Query: 469 TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
           T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 505 TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKIRIISFDKQLLLCSL 560

Query: 528 SFMMK---PTRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLAD 581
           +   +   P +  +     K+G +  G+V V     +++  I  G  +    +P   + D
Sbjct: 561 NLFPEENVPEKYEDVSRHFKVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVID 619

Query: 582 HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 641
             E   + K +I+ G    + L+L N+   ++++ K SLI+  Q++    S        +
Sbjct: 620 GDEGKDIPK-MIRNGTIIKECLLLKNQMGQMIITTKKSLISLRQKIGKFNSKEEMTVGKY 678

Query: 642 -GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 700
            GYV  I    CF+ F   +T    R    D     + +    GQ+V   +   N     
Sbjct: 679 IGYVSKIKGKYCFISFYNGVTIVCYRMNVSDSNLP-IEEVLENGQTVYGYLNKKN----- 732

Query: 701 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIG--------- 750
              SLK+S   S    +M    L  E+    +       E+K ++G+ IIG         
Sbjct: 733 -IFSLKESSVGSIKEEYM---LLRIERDVEPKYGSQIKIEIKDIKGYGIIGKSKEREETI 788

Query: 751 ----SVIEGKVHE----SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV 802
               + IEG + E    SN   +V+  ++   +   I    +   ++E   + +  ++ +
Sbjct: 789 FIPKTGIEGDIKEISKGSNMKCIVIGVDKERKMIDCIQEKMIKKESIEINKIYKGKVI-I 847

Query: 803 AKAERLVDL-SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 849
            K E  V L     VF+++ R  N  +   K++ +    K++  +Q +
Sbjct: 848 NKEEYCVCLVEGNIVFVNKIR-MNGGKYIVKEEVEINIGKEMEGYQNI 894


>gi|330779404|gb|AEC46534.1| programmed cell death 11-like protein [Spodoptera litura]
          Length = 408

 Score =  183 bits (465), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 99/266 (37%), Positives = 167/266 (62%), Gaps = 3/266 (1%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            PR+ ++FER + + PNSS +WI YMAF L   DVEKAR++A +AL TI+ RE  +K N++
Sbjct: 143  PRSSEQFERALLAHPNSSQLWIAYMAFHLQATDVEKARNVARKALSTISFREVLDKFNVY 202

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            VA  ++E  +G    E++ KV + ALQ  +P K+H  LL +Y  T +++    L+  M++
Sbjct: 203  VAMLSIECRFGTM--ESLQKVLEEALQMNEPLKIHSKLLDIYVETGKHQDLVALVELMMR 260

Query: 1664 KFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722
            K+K    ++++      +    E  + V+Q+A+  L + +H+  + Q A++E +NG  +R
Sbjct: 261  KYKRDPSMYIQCGAACFQLGLVEKARQVMQKAISLLEKKEHVSVLVQFALMENRNGGRER 320

Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
              ++FE +L+ YP R D+ S Y+D  ++  D D IR + ER  S  LP +KMK LFKK++
Sbjct: 321  AEALFEQVLAVYPARVDVCSTYVDMLLKNDDKDHIRQVMERMTSQKLPARKMKILFKKWI 380

Query: 1783 EYEKSVGEEERIEYVKQKAMEYVEST 1808
            E E+ +G+ E++E ++Q+A +Y+E  
Sbjct: 381  EVEERMGDLEQVEVLRQRAAQYMEKA 406


>gi|124808061|ref|XP_001348215.1| U3 small nucleolar ribonucleoprotein, U3 snoRNP, putative [Plasmodium
            falciparum 3D7]
 gi|23497105|gb|AAN36654.1| U3 small nucleolar ribonucleoprotein, U3 snoRNP, putative [Plasmodium
            falciparum 3D7]
          Length = 468

 Score =  183 bits (465), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 104/278 (37%), Positives = 164/278 (58%), Gaps = 20/278 (7%)

Query: 1546 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1605
            TP ++ERL+ S  N S +WI Y+AF L   ++E+AR +AERAL+TI+I E +EKLNI++ 
Sbjct: 190  TPFDYERLIASEKNKSAIWISYIAFYLEQNNLEEARKVAERALKTIDIHEIDEKLNIYLC 249

Query: 1606 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1665
            Y N+E  YG+   +    +F+RAL   + K ++L  + + ++ ++     +L  + IKKF
Sbjct: 250  YINMECLYGDKLND----IFKRALLCNNEKSIYLHTIHILKKNKKLTQLKDLCEEAIKKF 305

Query: 1666 KHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1723
            K+S K+W   +Q L    + +E    ++ ++L SLP+ KH+  I   A  E+K    +RG
Sbjct: 306  KYSKKIWSCYLQILHNTFKDEEYAHNILLKSLHSLPKKKHLNMIINAARFEYKYSNKERG 365

Query: 1724 RSMFEGILSEYPKRTDLWSIYLDQEI--------------RLGDVDLIRGLFERAISLSL 1769
            ++ FE ++ EYPKR+DLW  YLD  I               L ++  IR +FER +S   
Sbjct: 366  KTYFEKLIQEYPKRSDLWFTYLDIHINSLTKNENKEKIKLNLKELQFIRNIFERFLSYKF 425

Query: 1770 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             P+ MK +F K+L +EKS G     + V++KA +YVES
Sbjct: 426  KPRVMKIIFTKWLLFEKSQGNMHSQKTVQEKAYKYVES 463


>gi|183235504|ref|XP_648617.2| rRNA biogenesis protein RRP5 [Entamoeba histolytica HM-1:IMSS]
 gi|169800516|gb|EAL43230.2| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica
            HM-1:IMSS]
          Length = 811

 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1548 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1607
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 552  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 611

Query: 1608 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1667
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 612  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 669

Query: 1668 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 670  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 729

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1786
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 730  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 789

Query: 1787 SVGEEERIEYVKQKAMEYVES 1807
              G+E R E+V+  A  +V +
Sbjct: 790  KYGDESRQEHVRDIAKSFVST 810


>gi|183233031|ref|XP_001913793.1| rRNA biogenesis protein RRP5 [Entamoeba histolytica HM-1:IMSS]
 gi|169801769|gb|EDS89432.1| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica
            HM-1:IMSS]
          Length = 799

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1548 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1607
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 540  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 599

Query: 1608 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1667
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 600  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 657

Query: 1668 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 658  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 717

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1786
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 718  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 777

Query: 1787 SVGEEERIEYVKQKAMEYVES 1807
              G+E R E+V+  A  +V +
Sbjct: 778  KYGDESRQEHVRDIAKSFVST 798


>gi|328874880|gb|EGG23245.1| hypothetical protein DFA_05377 [Dictyostelium fasciculatum]
          Length = 822

 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 147/554 (26%), Positives = 256/554 (46%), Gaps = 45/554 (8%)

Query: 1   MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL--- 57
           +Y  +I AGM L G    V +  +V+ LP G+RG  +  +  D          +DN+   
Sbjct: 184 LYSSDIYAGMVLLGAFEMVTDSFIVVSLPFGIRGYVKFNEISDEFTKWSNSVMKDNIKYK 243

Query: 58  ------------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETV 105
                       + T+F  G L+   V+ + D KK    + +  +LR  ++ K  ++   
Sbjct: 244 SNFQKTDSILERIKTMFIKGHLLKVAVMGISDMKK----KGLLCTLRPEVINKESNIGNF 299

Query: 106 QEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNL-----AENSGIDVKP-------- 151
            EGM +   V+S++D GYI+ FG      GFL   +         S +D           
Sbjct: 300 TEGMNIYGSVQSVQDKGYIISFGSGFEHKGFLKFEDTKFYWPTTTSNVDASTATETTLSV 359

Query: 152 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 211
           G  L+  + +I  + K+V +S     VS+  TKD   I+   +  GM+V   + ++ +NG
Sbjct: 360 GQPLECNILTISESPKIVSVSVSHFLVSRATTKDSTAITAQSIKAGMLVEGTISAVYDNG 419

Query: 212 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 271
           + + FL +F G +  FH+    P T    D+ + + + ARI+ VD   + + L+L  + L
Sbjct: 420 LQVRFLEFFAGDIHQFHVDR--PLT----DFQEGRTLKARIISVDHEKKRIHLSLLSHCL 473

Query: 272 HNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
             R  P + +K+GDI+ +  +V+      +LL +P    S    +  +   E     L+ 
Sbjct: 474 GLRPFPFNTLKIGDIFHKDIIVKKVDTHEILLSLPD-EFSKVKGLLHNTQTENNKESLKG 532

Query: 331 KYKEGSCVRV--RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 388
           K+  GS + V  R+    +L+ + T   K       ++++ D++PG ++ G +  V    
Sbjct: 533 KFNVGSELHVPCRVKHVDYLDAMVTLTTKKKEIGKTIYSYYDLQPGQILDGTIKFVRDDS 592

Query: 389 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 446
             ++    +  + P+ ++ E  I+KP ++F  G  L FR+L V  + KR+ +T K +LV 
Sbjct: 593 IEIKITDNIFGVVPMHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLTLKPSLVH 652

Query: 447 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 506
           S L ILSS A      I  G+I++IE     V F+  V G   RS++   P    S  + 
Sbjct: 653 STLPILSSKAACKVGEIAQGFISRIEDERIHVTFFGDVHGIVDRSQMSRTPITMISEHFQ 712

Query: 507 VGQVVKCRIMSSIP 520
           +GQVV  + +   P
Sbjct: 713 IGQVVTTKTLQVNP 726



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 1223 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1282
            LD M +     L+T     GK +    DL P  I+ G +K V      I ++  +   V 
Sbjct: 552  LDAMVT-----LTTKKKEIGKTIYSYYDLQPGQILDGTIKFVRDDSIEIKITDNIFGVVP 606

Query: 1283 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1342
            + NL +  +  P + F  G+ +  R+L V P  KR+ +TLK S    ++   +++ +   
Sbjct: 607  MHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLTLKPSLVH-STLPILSSKAACK 665

Query: 1343 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1402
            VG+I  G I R+E   + +T    ++ G+   S++S   +  I   ++ G+ V  K L+V
Sbjct: 666  VGEIAQGFISRIEDERIHVTFFG-DVHGIVDRSQMSRTPITMISEHFQIGQVVTTKTLQV 724

Query: 1403 DKEKRRISLGMKSSYFKNDADNLQ 1426
            + +   ++L + ++ ++   +++Q
Sbjct: 725  NPKGLFLTLIIDNADYQQYLNSIQ 748



 Score = 44.3 bits (103), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 157/390 (40%), Gaps = 51/390 (13%)

Query: 197 GMMVSTRVQSILENGVMLSFLTYF--TGTVDIFHLQNTFPTTNWKNDYNQH--------K 246
           GM +   VQS+ + G ++SF + F   G +     +  +PTT    D +          +
Sbjct: 302 GMNIYGSVQSVQDKGYIISFGSGFEHKGFLKFEDTKFYWPTTTSNVDASTATETTLSVGQ 361

Query: 247 KVNARILFVDPTSRAVGLTLNPYLLHNRAP--------PSHVKVGDIYDQSKVVRVDRGL 298
            +   IL +  + + V ++++ +L+ +RA            +K G + + +     D GL
Sbjct: 362 PLECNILTISESPKIVSVSVSHFLV-SRATTKDSTAITAQSIKAGMLVEGTISAVYDNGL 420

Query: 299 GL-LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 357
            +  L+  +            D+ +  V +    ++EG  ++ RI+   H +      L 
Sbjct: 421 QVRFLEFFA-----------GDIHQFHVDRPLTDFQEGRTLKARIISVDHEKKRIHLSLL 469

Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIA--VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 415
           +       F  + +K G +    +I   VD+   ++  P     +  L H ++ E  K  
Sbjct: 470 SHCLGLRPFPFNTLKIGDIFHKDIIVKKVDTHEILLSLPDEFSKVKGLLHNTQTENNKES 529

Query: 416 --KKFKVGAELVF--RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
              KF VG+EL    RV  V      +T+T KK   K     + SY +     I  G I 
Sbjct: 530 LKGKFNVGSELHVPCRVKHVDYLDAMVTLTTKK---KEIGKTIYSYYDLQPGQILDGTIK 586

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
            +      ++  + + G  P   LG     +P   ++ GQ ++ RI+  +P  +R+ L+ 
Sbjct: 587 FVRDDSIEIKITDNIFGVVPMHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLT- 645

Query: 530 MMKPTRV-------SEDDLVKLGSLVSGVV 552
            +KP+ V       S     K+G +  G +
Sbjct: 646 -LKPSLVHSTLPILSSKAACKVGEIAQGFI 674



 Score = 43.9 bits (102), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 153/368 (41%), Gaps = 43/368 (11%)

Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 416
           +A+  +    T   +K GM+V+G + AV   G  V+F            + +F + +P  
Sbjct: 388 RATTKDSTAITAQSIKAGMLVEGTISAVYDNGLQVRFLEFFAG-----DIHQFHVDRPLT 442

Query: 417 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL--ITHGWIT--K 470
            F+ G  L  R++ V  + KRI ++     + S    L  +   T ++  I H  I   K
Sbjct: 443 DFQEGRTLKARIISVDHEKKRIHLS-----LLSHCLGLRPFPFNTLKIGDIFHKDIIVKK 497

Query: 471 IEKHGCFVRF---YNGVQGFAPRSELGLDPGCEPSSMYHVGQV--VKCRIMSSIPASRRI 525
           ++ H   +     ++ V+G    ++   +        ++VG    V CR+         +
Sbjct: 498 VDTHEILLSLPDEFSKVKGLLHNTQTENNKESLKGK-FNVGSELHVPCRVKHVDYLDAMV 556

Query: 526 NLSFMMK---PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 582
            L+   K    T  S  DL + G ++ G +  V  +++ + +    +  G +P  +L + 
Sbjct: 557 TLTTKKKEIGKTIYSYYDL-QPGQILDGTIKFVRDDSIEIKITDNIF--GVVPMHNLGET 613

Query: 583 LEHATVMKSVIKPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 635
           +        ++KP   F+       ++L +  E   L+L+ K SL++S   + S  +   
Sbjct: 614 M--------ILKPRERFNAGQSLRFRILKVVPEKKRLVLTLKPSLVHSTLPILSSKAACK 665

Query: 636 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
              +  G++  I +    V F G + G   RS+        +S+ + +GQ V +  L VN
Sbjct: 666 VGEIAQGFISRIEDERIHVTFFGDVHGIVDRSQMSRTPITMISEHFQIGQVVTTKTLQVN 725

Query: 696 SETGRITL 703
            +   +TL
Sbjct: 726 PKGLFLTL 733


>gi|449703273|gb|EMD43755.1| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica KU27]
          Length = 725

 Score =  181 bits (460), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1548 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1607
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 466  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 525

Query: 1608 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1667
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 526  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 583

Query: 1668 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 584  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 643

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1786
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 644  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 703

Query: 1787 SVGEEERIEYVKQKAMEYVES 1807
              G+E R E+V+  A  +V +
Sbjct: 704  KYGDESRQEHVRDIAKSFVST 724


>gi|449018016|dbj|BAM81418.1| similar to rRNA biogenesis protein; rrp5 homolog; multiple S1 rna
            binding domain protein [Cyanidioschyzon merolae strain
            10D]
          Length = 2038

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/311 (35%), Positives = 175/311 (56%), Gaps = 14/311 (4%)

Query: 1506 DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1565
            D ++++DE +       + E  E+  RA  E L +   P+T  +FER +   PN   +WI
Sbjct: 1721 DWSRSVDEASGAARAPLDDEALERGERALVESLHK---PQTAADFERALLGRPNDPQLWI 1777

Query: 1566 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1625
             YMA  L+  +  +AR IAERALQTI+ RE   ++ +W+AY NLE       +     +F
Sbjct: 1778 GYMALHLATGNELEARGIAERALQTIHYREYQARMRVWIAYLNLERSANAAADPLESDIF 1837

Query: 1626 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRR-VQRLLKQQ 1683
            +RALQ CD  ++HL L    E  ++ KLA  +     ++  H +  VW+       L+  
Sbjct: 1838 RRALQNCDSLQLHLRLARSLEAAQEVKLAGRVYEHACRRHGHQTASVWIAYGAFCFLRSS 1897

Query: 1684 QEGV-QAVVQRALLSL-PRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDL 1740
            QE + + +++RAL +L    +H++ I + A  EFK +G  +RGR++ E ++  +PKR D 
Sbjct: 1898 QEVLGRTLLERALRALMDPAQHVQCILKFATFEFKGSGEPERGRTLLENLIQAFPKRLDF 1957

Query: 1741 WSIYLDQEIRL-----GDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERI 1794
            W++YLD E+ L     G ++L+R LF R  +L +L  K+ K  FK+YLE E++ G+   +
Sbjct: 1958 WNVYLDMELMLLRQERGKLELVRRLFRRCTALPNLSLKQAKHFFKRYLEVERAFGDASSV 2017

Query: 1795 EYVKQKAMEYV 1805
            E+VKQ A  YV
Sbjct: 2018 EHVKQAARAYV 2028



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 173/386 (44%), Gaps = 39/386 (10%)

Query: 152 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 211
           G++    + S +  R+   L +DP  V++  T+     +++ L PGM+V  +V S  E  
Sbjct: 250 GMVCWASLASWNEQRRTGILQNDPKMVAEAFTRG--HWTLEQLSPGMLVEAQVLSRDERF 307

Query: 212 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK---VNARILFVDPTSRAVGLTLNP 268
            ++ FL  F G ++ FHL        W+ D+ + +    +  R++++D   R + +T   
Sbjct: 308 AIVRFLQVFEGILEWFHLD------QWE-DFARLEPDAILRVRLIYIDCRRRRIMVTART 360

Query: 269 YLLHNRAPPSHVKVGDIYDQS------KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
            L++    P  V     Y +       +V +++ G G+ L      +    +     +++
Sbjct: 361 SLVNTLTLPLLVSAARRYHRGSFVESLRVFKIENGRGIWLRKDKEAIYF--FADRKMLSD 418

Query: 323 EEVRKLEKKYKEGSCV-RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 381
           E   ++E+ +  G+ V R R++    +EG+    LK S  E      S+++PG +V+ +V
Sbjct: 419 ERFSRMERLFPLGTVVPRARVVSHMAMEGIVRVSLKPSLLERKFMDVSELEPGALVRCRV 478

Query: 382 IAVDSFGAIVQFPG-------GVKALCPLPHMSEFEIV--KPGKKFKVGAELVFRVLGV- 431
           +   S       P         +    PL  +++  +   +  KKF  G++L  RV  V 
Sbjct: 479 LGWISVTPATATPSLRVSIEDCLSGEIPLELLTDVPVQWRRLEKKFPPGSQLRCRVWLVY 538

Query: 432 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF-VRFYNGVQGFAP 489
            K K++ +T +++LV S L IL+ +       +  G +   +  G + V FY    G  P
Sbjct: 539 PKRKQVLLTARRSLVDSDLPILAGWDTMQQGQVYAGILGPRDPSGAYRVLFYQRFTGILP 598

Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRI 515
            + LG +      + +  GQV++ R+
Sbjct: 599 -ANLGTE-----MASFKSGQVIRVRV 618



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 98/200 (49%), Gaps = 22/200 (11%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +V  +V++V   G F+ L+  L A+ LL +L++G+V  P + +P+G  V   +       
Sbjct: 1394 VVGAFVRHVDQAGVFLNLAPGLVARCLLRDLAEGFVPDPVQVYPVGMHVQAMITDCGGSD 1453

Query: 1316 KR-VEVTLKTSDSRTASQSEINNL------SNLHVGDIVIGQIKRVESYGLFITI--ENT 1366
             R V V+L+ +  +   Q +          S +H+G + +G+++RV  +G+F+ +  + T
Sbjct: 1454 ARHVRVSLRAAQQQQQQQQQRAVAAEQAPTSAVHIGGVYLGRVRRVVPFGIFVELLTDRT 1513

Query: 1367 N-------LVGLCHVSELSEDH----VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            +          LCH SEL E       + +   +R G+ + V ++  D    R+SL  K+
Sbjct: 1514 DEGDAQVLATALCHRSELVEQGPWPLPEELPQRFRVGQHLPVLVVARDAAG-RLSLSAKA 1572

Query: 1416 SYFKNDADNLQMSSEEESDE 1435
            S  K +A   Q +S +  DE
Sbjct: 1573 SLIK-EALATQCASAKSIDE 1591


>gi|195111152|ref|XP_002000143.1| GI22689 [Drosophila mojavensis]
 gi|193916737|gb|EDW15604.1| GI22689 [Drosophila mojavensis]
          Length = 1396

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/267 (38%), Positives = 154/267 (57%), Gaps = 8/267 (2%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P T D+FERLV + PN S  WI+YM+FMLS  +++KAR IA RA++TI  RE  E  N+W
Sbjct: 1129 PETIDQFERLVLAEPNDSKTWIQYMSFMLSNTEIDKAREIARRAIKTIAFRETKELRNMW 1188

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            +A  NLE  Y +   + V+K    AL + DP + ++ L+ + +   Q +    +L  +++
Sbjct: 1189 MALLNLELSYNSSNFDDVLK---EALTHTDPLETYIKLVEVLKAHNQKERLISVLNNLMR 1245

Query: 1664 KFKHSCKVWLRRVQR---LLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1720
            KFK   +VW  RV           E VQ  +QRA+  LP+++HI  I   A +  KN   
Sbjct: 1246 KFKSDLQVW--RVAADAYFWLGMPERVQPTLQRAINVLPKNEHINCIVAFAKIYAKNNDN 1303

Query: 1721 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1780
               +++ + I++ YPKR D+W +Y D  I+ G +D  R L ERA+   L P KM  ++KK
Sbjct: 1304 GMAQTLLDDIVTSYPKRIDIWVLYADMLIKAGLIDSARNLMERAVLQKLQPDKMLVIYKK 1363

Query: 1781 YLEYEKSVGEEERIEYVKQKAMEYVES 1807
            +L+ E+  G EE    VK+ A +YV+S
Sbjct: 1364 FLDLEEKHGTEENAARVKKLAEQYVQS 1390



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 115/506 (22%), Positives = 223/506 (44%), Gaps = 33/506 (6%)

Query: 6   ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP---ILDNEI--EANEDNLLPT 60
           +   M + GVV   +   L I LPG +   A  AD  D    +  + +  +++E   L  
Sbjct: 68  LQENMLVMGVVKATDATSLQIALPGRMTARALVADISDAYGRVAQSYMAGDSSEYRDLTA 127

Query: 61  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 120
           +F+VGQ+V    ++   D  E  +  + L+L+ S +   L    +++G +    ++ I++
Sbjct: 128 LFNVGQIVYGRAIKTRKDS-ESKRMSLLLTLKPSEVNSSLHHANIKKGFIFVGAIEEIQE 186

Query: 121 HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVVYLSSDPDTVS 179
           HG ++  G+     F+P  N A+   I     L ++ +    D+ T + V +  D     
Sbjct: 187 HGCVIETGIDGLQAFVPIENAAQKHHIGQLIFLKVKQIQHDSDKSTCQCVCIEQD----- 241

Query: 180 KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNW 238
           K   K     ++D ++PG +V  +V   L+NG+  S +   F G V+  HL     +   
Sbjct: 242 KLKIKSQHETNLDYILPGSIVKFKVTKHLKNGLEGSIMNEAFRGYVNEHHLAEALQSP-- 299

Query: 239 KNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-LHNRAPPSH----VKVGDIYDQSKVVR 293
             DY  +++  AR+L+V P ++ V LT N  + +H   P S     +K G I ++++V+R
Sbjct: 300 -QDYEVNEEYLARLLYVMPLTKLVYLTFNLNITVHPEQPESEGEELLKKGSIVEKARVLR 358

Query: 294 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK--LEKKYKEGSCVRVRILGFRHLEGL 351
              G G+++ +        +Y +I    +    +  +  KY   S  +VR+LG+  +E L
Sbjct: 359 HGTG-GIVVLLNHKYKGLISYGSIKSNFKGNYDQDVVLAKYSSKSKHKVRVLGYDVIESL 417

Query: 352 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD-SFGAIVQFPGGVKALCPLPHMSEFE 410
                  +     ++T  D++ G +V  +++  D   G      G V  +     ++   
Sbjct: 418 YYCTDDPNVVNEKMYTLEDIQTGDIVSARIVKPDPKIGGYSVKIGKVNGIIEQLQLA--- 474

Query: 411 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
              P  +++VG  +  RVL +   R    ++ +   +   + +L+S   A    +  G +
Sbjct: 475 ---PNTRYEVGQRVRCRVLEISLDRKICYLSSRNEYLSKGIKLLTSLQLAQPGHVFTGTV 531

Query: 469 TKIEKHGCFVRFYNGVQGFAPRSELG 494
            K E     V+F  G++G   +  L 
Sbjct: 532 VKCEASYVLVKFCGGIKGVLHKQRLN 557



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 25/152 (16%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY---------VESPEKE-- 1297
            + L  NM+V G VK   +    I L  ++ A+ L++++SD Y          +S E    
Sbjct: 66   DTLQENMLVMGVVKATDATSLQIALPGRMTARALVADISDAYGRVAQSYMAGDSSEYRDL 125

Query: 1298 ---FPIGKLVAGRVLSV--EPLSKRVEVTLKTSDSRTASQSEINNL---SNLHVGDIVIG 1349
               F +G++V GR +    +  SKR+ + L      T   SE+N+    +N+  G I +G
Sbjct: 126  TALFNVGQIVYGRAIKTRKDSESKRMSLLL------TLKPSEVNSSLHHANIKKGFIFVG 179

Query: 1350 QIKRVESYGLFITIENTNLVGLCHVSELSEDH 1381
             I+ ++ +G  I      L     +   ++ H
Sbjct: 180  AIEEIQEHGCVIETGIDGLQAFVPIENAAQKH 211


>gi|157868539|ref|XP_001682822.1| rRNA biogenesis protein-like protein [Leishmania major strain
            Friedlin]
 gi|68126278|emb|CAJ03797.1| rRNA biogenesis protein-like protein [Leishmania major strain
            Friedlin]
          Length = 738

 Score =  181 bits (459), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/295 (36%), Positives = 166/295 (56%), Gaps = 31/295 (10%)

Query: 1534 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
            A ER +E   P +P+EF+RL+ ++PNSS+VW++YMA+ + +   E AR +AE+AL TI +
Sbjct: 442  AYERGMETAVPTSPEEFQRLLLANPNSSYVWMQYMAYHVGLQQYEAARQVAEKALSTIGV 501

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER------ 1647
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 502  REQEELLNVWVAYLNIENLYGT--EESLSAVFRRAQQR------QLNQLTLFERLADIYA 553

Query: 1648 --TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRH 1701
               + N+L   L   M  KF+   + W R    L+ Q   G +  ++R L      L R 
Sbjct: 554  ASRKPNQLL-ALCRAMTGKFRTERRTWERLGIVLVDQ---GKRDQLKRTLKDMGDVLKRD 609

Query: 1702 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDV 1754
                 I   AI E+K+G  + GR++FEG+L + PKR+D+W+IY DQE+ L       G  
Sbjct: 610  DATLAIVHIAIHEYKHGSPENGRALFEGLLRKVPKRSDVWTIYTDQEMGLLNRKDPMGST 669

Query: 1755 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
              +R + +R ++++   K M+ +  ++L +EK  G    +E VK+ A  YVES +
Sbjct: 670  LQVRQILQRTVAMNFSAKVMQQVLTRFLSFEKLHGTPADVESVKKCARTYVESKI 724


>gi|183234827|ref|XP_001914090.1| rRNA biogenesis protein RRP5 [Entamoeba histolytica HM-1:IMSS]
 gi|169800889|gb|EDS89135.1| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica
            HM-1:IMSS]
          Length = 517

 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1548 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1607
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 258  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 317

Query: 1608 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1667
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 318  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 375

Query: 1668 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 376  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 435

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1786
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 436  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 495

Query: 1787 SVGEEERIEYVKQKAMEYVES 1807
              G+E R E+V+  A  +V +
Sbjct: 496  KYGDESRQEHVRDIAKSFVST 516


>gi|164660947|ref|XP_001731596.1| hypothetical protein MGL_0864 [Malassezia globosa CBS 7966]
 gi|159105497|gb|EDP44382.1| hypothetical protein MGL_0864 [Malassezia globosa CBS 7966]
          Length = 278

 Score =  181 bits (458), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 97/242 (40%), Positives = 147/242 (60%), Gaps = 4/242 (1%)

Query: 1568 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1627
            M F L + +V+KAR +A RA+Q I+ REE EKLN+W+A  N+EN YG+P  E V  VF+ 
Sbjct: 1    MTFYLQLGNVDKARQVARRAIQVIHFREEQEKLNVWMALLNVENMYGSP--ETVEAVFKE 58

Query: 1628 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG- 1686
            A QY D  +VH  +L +YE   +   A  L  + +KKF     +W+R  +  L+  +E  
Sbjct: 59   AAQYNDALEVHSRMLSIYEHGNKIDDAAALFPRAVKKFSFVPDMWIRWYEFCLRHDREDE 118

Query: 1687 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1746
              A+V R+L SL R +H++ ++  A+ E+K G  +  R+MFE ++S YPKRTD+W  Y+D
Sbjct: 119  AHALVPRSLQSLDRKQHLRVLTAYALAEYKLGDVEHARTMFETLVSRYPKRTDIWWQYID 178

Query: 1747 QEIRLGDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            QE+RL +    R L ER ++      K++K L +K+L  EK VG+E  ++ V  +A  +V
Sbjct: 179  QEVRLENAAGARSLMERCLAARKHTTKQVKSLLQKWLVIEKRVGDEAGVQRVLDRARAFV 238

Query: 1806 ES 1807
             S
Sbjct: 239  AS 240


>gi|193582568|ref|XP_001948922.1| PREDICTED: protein RRP5 homolog [Acyrthosiphon pisum]
          Length = 346

 Score =  180 bits (457), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 170/292 (58%), Gaps = 5/292 (1%)

Query: 1515 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1574
            N    +KK++E R +++  AE   +E+D P  PD +ERL+  +P SSF+W+KYMAF L  
Sbjct: 52   NQWREEKKQREIRNRKLE-AELIQIERD-PLNPDHYERLLLDNPGSSFIWMKYMAFYLHT 109

Query: 1575 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634
             ++E AR+ A+RAL TI+ REE EKLN+W A    E  YGN  +E+  +    AL+  D 
Sbjct: 110  RNLETARATAKRALTTIDAREEIEKLNVWTALLIAEELYGN--KESFKQTMNEALRSNDE 167

Query: 1635 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR-RVQRLLKQQQEGVQAVVQR 1693
              V++ +L ++E +   K  D+   K+I KF  S   +LR  +      + +  + ++Q+
Sbjct: 168  YMVYIKILEIFEESNVLKGLDKFTSKIITKFSDSLDAYLRCAIMYFRLNKSDQARLILQK 227

Query: 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1753
            A+ +LP   H+  IS+ A+LE   G  +  +++FE +L+ YP R ++ S+Y+D  ++   
Sbjct: 228  AISNLPTKSHVIMISKFALLENHVGSKEEAQTLFEHVLTCYPSRINVLSLYVDMLVKSNK 287

Query: 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            +DL R   ERA + +L P+KM  LF K+L+ EK  G  E ++ VK     YV
Sbjct: 288  IDLARHALERATTQTLAPRKMNSLFNKWLKLEKKHGTSESVDKVKICMNNYV 339


>gi|398014441|ref|XP_003860411.1| rRNA biogenesis protein-like protein [Leishmania donovani]
 gi|322498632|emb|CBZ33704.1| rRNA biogenesis protein-like protein [Leishmania donovani]
          Length = 737

 Score =  179 bits (455), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 164/295 (55%), Gaps = 31/295 (10%)

Query: 1534 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
            A ER +E   P +P+EF+RL+ ++PNSS+VW +YMA+ + +   E AR +AE+AL TI +
Sbjct: 442  AYERGMETAVPTSPEEFQRLLLANPNSSYVWTQYMAYHVGLQQYEAARQVAEKALSTIGV 501

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER------ 1647
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 502  REQEELLNVWVAYLNIENLYGT--EESLSAVFRRAQQR------QLNQLVLFERLADIYA 553

Query: 1648 --TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRH 1701
               + N+L   L   M  KF+   + W R    L+ Q   G +  ++R L      L R 
Sbjct: 554  ASRKPNQLL-ALCRAMTGKFRTERRTWERLGIVLVDQ---GKRDQLKRTLKDMGDVLKRD 609

Query: 1702 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDV 1754
                 I   AI E+K G  + GR++FEG+L + PKR+D+WSIY DQE+ L          
Sbjct: 610  DATLAIVHIAIHEYKQGSPENGRALFEGLLRKVPKRSDVWSIYTDQEMGLLNRKDPTAST 669

Query: 1755 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
              +R +F+R ++++   K M+ +  ++L +EK  G    +E VK+ A  YVES +
Sbjct: 670  LQVRQIFQRTVAMNFSAKVMQQVLTRFLSFEKLHGTPADVESVKRFARTYVESKI 724


>gi|146085140|ref|XP_001465188.1| rRNA biogenesis protein-like protein [Leishmania infantum JPCM5]
 gi|134069285|emb|CAM67435.1| rRNA biogenesis protein-like protein [Leishmania infantum JPCM5]
          Length = 733

 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 164/295 (55%), Gaps = 31/295 (10%)

Query: 1534 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
            A ER +E   P +P+EF+RL+ ++PNSS+VW +YMA+ + +   E AR +AE+AL TI +
Sbjct: 438  AYERGMETAVPTSPEEFQRLLLANPNSSYVWTQYMAYHVGLQQYEAARQVAEKALSTIGV 497

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER------ 1647
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 498  REQEELLNVWVAYLNIENLYGT--EESLSAVFRRAQQR------QLNQLVLFERLADIYA 549

Query: 1648 --TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRH 1701
               + N+L   L   M  KF+   + W R    L+ Q   G +  ++R L      L R 
Sbjct: 550  ASRKPNQLL-ALCRAMTGKFRTERRTWERLGIVLVDQ---GKRDQLKRTLKDMGDVLKRD 605

Query: 1702 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDV 1754
                 I   AI E+K G  + GR++FEG+L + PKR+D+WSIY DQE+ L          
Sbjct: 606  DATLAIVHIAIHEYKQGSPENGRALFEGLLRKVPKRSDVWSIYTDQEMGLLNRKDPTAST 665

Query: 1755 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
              +R +F+R ++++   K M+ +  ++L +EK  G    +E VK+ A  YVES +
Sbjct: 666  LQVRQIFQRTVAMNFSAKVMQQVLTRFLSFEKLHGTPADVESVKRFARTYVESKI 720


>gi|389603784|ref|XP_003723037.1| rRNA biogenesis protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|322504779|emb|CBZ14565.1| rRNA biogenesis protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 742

 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 163/294 (55%), Gaps = 29/294 (9%)

Query: 1534 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
            A ER +E   P +P+EF+RL+ ++PNSS++W +YMA+ + +   E AR +AE+AL TI +
Sbjct: 446  AYERGIETAVPTSPEEFQRLLLANPNSSYMWTQYMAYHVGLQQYETARQVAEKALSTIGV 505

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1653
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 506  REQEELLNVWVAYLNVENLYGT--EESLSAVFRRAQQR------QLNQLALFERLADIYT 557

Query: 1654 ADE-------LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRHK 1702
            A         L   M  KF+   + W R    L+ Q   G +  ++R L      L R  
Sbjct: 558  ASRKPNQLLALCRAMTGKFRTERRAWERLGIVLIDQ---GKRDQLKRTLKDMGNMLKRDD 614

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVD 1755
                I   AI E+K+G  + GR++FEG+L + PKR+D+WS Y DQE+ L       G   
Sbjct: 615  ATLAIVHIAIHEYKHGNPENGRALFEGLLRKVPKRSDVWSTYTDQEMGLLIRKDPTGSTL 674

Query: 1756 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
             +R +F+RA++++   K M+ +  ++L +EK  G    +E VK+ A  YVE+ +
Sbjct: 675  QVRQIFQRAVAMNFSAKVMQQVLTRFLSFEKLHGTLTDVEAVKKCARTYVEAKI 728


>gi|183237274|ref|XP_001914593.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169799229|gb|EDS88631.1| hypothetical protein EHI_117370 [Entamoeba histolytica HM-1:IMSS]
          Length = 407

 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 157/259 (60%), Gaps = 3/259 (1%)

Query: 1548 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1607
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 148  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 207

Query: 1608 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1667
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 208  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 265

Query: 1668 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 266  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 325

Query: 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1786
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 326  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 385

Query: 1787 SVGEEERIEYVKQKAMEYV 1805
              G+E R E+V+  A  +V
Sbjct: 386  KYGDESRQEHVRDIAKSFV 404


>gi|444517556|gb|ELV11659.1| Protein RRP5 like protein [Tupaia chinensis]
          Length = 202

 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/196 (46%), Positives = 133/196 (67%), Gaps = 3/196 (1%)

Query: 1613 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1672
            YG+P  E++ K F+RA+QY +P KV L L  +Y ++E+ + A +L  +M+K+F+    VW
Sbjct: 2    YGSP--ESLTKAFERAVQYNEPLKVFLHLADIYTKSEKFQEAGDLYNRMLKRFRQEKAVW 59

Query: 1673 LRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1731
            ++    LL+Q Q G    V+QRAL  LP  +H+  IS+ A LEF+ G  +R +++FE  L
Sbjct: 60   IKYGAFLLRQSQAGASHRVLQRALECLPSKEHVDVISKFAQLEFQLGDPERAKAIFENTL 119

Query: 1732 SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1791
            S YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E
Sbjct: 120  STYPKRTDVWSVYIDMTIKYGRQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTE 179

Query: 1792 ERIEYVKQKAMEYVES 1807
            + ++ VK KA+EYVE+
Sbjct: 180  KDVQAVKAKALEYVEA 195


>gi|239793504|dbj|BAH72864.1| ACYPI004236 [Acyrthosiphon pisum]
          Length = 346

 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 170/292 (58%), Gaps = 5/292 (1%)

Query: 1515 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1574
            N    +KK++E R +++  AE   +E+D P  PD +ERL+  +P SSF+W+KYMAF L  
Sbjct: 52   NQWREEKKQREIRNRKLE-AELIQIERD-PLNPDHYERLLLDNPGSSFIWMKYMAFYLHT 109

Query: 1575 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634
             ++E AR+ A+RAL TI+ REE EKLN+W A    E  YGN  +E+  +    AL+  D 
Sbjct: 110  RNLETARATAKRALTTIDAREEIEKLNVWTALLIAEELYGN--KESFKQTMNEALRSNDE 167

Query: 1635 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR-RVQRLLKQQQEGVQAVVQR 1693
              V++ +L ++E +   K  D+   K+I KF  S   +LR  +      + +  + ++Q+
Sbjct: 168  YMVYIKILEIFEESNVLKGLDKFTSKIITKFSDSLDAYLRCAIMYFRLNKSDQARLILQK 227

Query: 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1753
            A+ +LP   H+  IS+ A+LE   G  +  +++FE +L+ YP R ++ S+Y+D  ++   
Sbjct: 228  AISNLPTKSHVIMISKFALLENHVGSKEEAQTLFEHVLTCYPSRINVLSLYVDMLVKSNK 287

Query: 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            +DL R   ERA + +L P+KM  LF K+L+ EK  G  E ++ VK     YV
Sbjct: 288  IDLARHALERATTQTLAPRKMNSLFNKWLKLEKKHGTFESVDKVKICMNNYV 339


>gi|307107853|gb|EFN56095.1| hypothetical protein CHLNCDRAFT_145628 [Chlorella variabilis]
          Length = 1396

 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 162/653 (24%), Positives = 285/653 (43%), Gaps = 93/653 (14%)

Query: 628  PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 687
            PS    +   +++ GYV ++     FVRFL  LTG A  ++  D   +D    +  GQSV
Sbjct: 754  PSAVEAVAEGALLAGYVASVTSGAVFVRFLDGLTGRAGLAQLSDTFVSDPHLFFREGQSV 813

Query: 688  RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
            R+ ++D   +  R +++LKQS C S DA+++Q  F     +   ++  ++ +++ W   F
Sbjct: 814  RATVVDAQRQ--RFSVALKQSLCGSRDAAYLQSLF---SDLEAAEALSNDAADVDWAA-F 867

Query: 748  IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL-AGATVESGSVIQAAILDVAKAE 806
             IG +  G+VHE+  +G++   E H+DV G +  HQ+ AGA+ E G+ ++A +LD  K E
Sbjct: 868  AIGGIAPGEVHEAKGYGLICDLEAHADVVGLVAPHQMPAGASREPGTSVRAVVLDANKRE 927

Query: 807  RLVDLSLKTVFIDRFR-----------EANSNRQAQKKKRKREASKDLGVHQTVNAIVEI 855
             +VDLSL+   +   +                ++      K  A+ +L   Q +   VE+
Sbjct: 928  GVVDLSLQPRLVAAAQAAAAAADAETAPKKKKQKKAAVGGKAAAAAELKEGQRLECKVEL 987

Query: 856  VKE--NYLVLSLPEYNHS------IGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSS 906
            VKE   Y V++LP  + S      +G+   +D+N Q +  Q+    G S+ A+V ALPS 
Sbjct: 988  VKEEAGYCVVTLPAADGSPTGSPLLGFLPTTDFNLQYQQHQQPPRPGDSLTASVAALPSP 1047

Query: 907  STAGRLLLLLK---------------AISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 951
            +T GRLLL                    ++   S  ++A++   +  GS V+A +     
Sbjct: 1048 ATGGRLLLAAPVGGKPVKPAAAAGGTGAAKRPQSDKQQAQRMQQHATGSCVEATV----- 1102

Query: 952  LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1011
                        G +H    + D   +   +     +G+  TA         + ++  + 
Sbjct: 1103 ------------GAVHALHADLDLDKLAVAV-----LGRVTTA---------EGRRHSVL 1136

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECD----VSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1067
            E S +P  ++ +  G  L    C     +  GQ++ GYV  V         S  ++ + F
Sbjct: 1137 ECSSRPEAVSAARAGQALPRHPCPALAALRPGQQLQGYVQDVQQGHVWCAFSPSVRGRAF 1196

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
               +A    E +   +RF  G+ V   V+ ++K++K L + L      +       S   
Sbjct: 1197 ATQAASSIEECERLGKRFKPGQPVQATVVHVDKKRKALDVSL------LPAAPEAASEAA 1250

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF- 1186
                   G +  GR+S +  G GG+ V++     GRV  T++ +  V + L+G   GQ+ 
Sbjct: 1251 AAGAPAPGTVALGRVSAV--GGGGVRVRLSARSVGRVALTDIHDGAVEECLAGLQAGQYC 1308

Query: 1187 -------DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1232
                   D  +  D GQ    +      +      + LSLR S  G  + + +
Sbjct: 1309 QAVVLGPDTSASPDSGQEASGRKRGGRSSGAAAGQLLLSLRPSAGGRCAAHGA 1361



 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 149/505 (29%), Positives = 226/505 (44%), Gaps = 81/505 (16%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNE-------------- 49
           +N+S G KLWG V EV+ ++LV+ LP GLRG    A+A D +                  
Sbjct: 93  KNLSRGCKLWGAVIEVSPRELVVSLPHGLRGHVAYAEASDWLAGQSKAAAAAGAEAAGED 152

Query: 50  -----------------IEANEDNLLPTI---FHVGQLVSCIVLQLDDDKK--------- 80
                              A  + +LP +   F +GQLV   V+ L              
Sbjct: 153 GAAAIAAAAAGKKRKAGTAAATEVVLPPLTDLFTIGQLVRGTVVALRSGSSGDSESAGKA 212

Query: 81  -------------EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF 127
                           K+++ LSLR+S +  GL  E+++EG+ L A V S+EDHGY+L  
Sbjct: 213 GAKKAAAAEGGAGGAKKKRVDLSLRVSKMNAGLGPESLREGLALPACVSSVEDHGYLLAL 272

Query: 128 GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLS-----SDPDTVSKCV 182
           G+   +GFLP+   A          LL   V             S       P+ V+  V
Sbjct: 273 GVKGVSGFLPKKAAAAAGRALAPGMLLDVAVPPGGAPKPAGGGGSVLGVVCAPEAVAMAV 332

Query: 183 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 242
            ++ +G++I  L+PG +V+ RV+++L +G++ SFLTYF+GTVD FHL       +W+  +
Sbjct: 333 AREWEGLNIGSLLPGQLVAARVRNVLSDGLLCSFLTYFSGTVDPFHLGADL-AADWRKQF 391

Query: 243 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQ------SKVVRVDR 296
           + ++++ ARIL+VDP S+ V LTL+ +L+    P +   +G +  +        V RV+ 
Sbjct: 392 SPNQRLRARILYVDPASKRVALTLHRHLISASLPVNFPMLGQVDVRPGMPVSGTVSRVEE 451

Query: 297 GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 356
             GLL+ + S   S  A V +   ++    K  +K+K G  V  ++L         T  L
Sbjct: 452 -YGLLVALTS---SIRALVPVLHASDVGTAKALRKFKAGQTVAGKVLTVDPATKKVTMTL 507

Query: 357 KASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV- 412
           K S        +    D  PG    G V     FG  V F GGV  L    H+SE  +  
Sbjct: 508 KPSLVGSKLPPIARTQDAVPGGRSHGVVTGARDFGVFVSFFGGVTGLA---HVSECGLAA 564

Query: 413 --KPGKKFKVGAELVFRVLGVKSKR 435
             KP + F+ G  +  RVLG    R
Sbjct: 565 DQKPPEAFQAGQVVKCRVLGADPSR 589



 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 2/168 (1%)

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           DV+PGM V G V  V+ +G +V     ++AL P+ H S+    K  +KFK G  +  +VL
Sbjct: 435 DVRPGMPVSGTVSRVEEYGLLVALTSSIRALVPVLHASDVGTAKALRKFKAGQTVAGKVL 494

Query: 430 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
            V   +K++T+T K +LV SKL  ++   +A     +HG +T     G FV F+ GV G 
Sbjct: 495 TVDPATKKVTMTLKPSLVGSKLPPIARTQDAVPGGRSHGVVTGARDFGVFVSFFGGVTGL 554

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
           A  SE GL    +P   +  GQVVKCR++ + P+ + + LS + KP +
Sbjct: 555 AHVSECGLAADQKPPEAFQAGQVVKCRVLGADPSRKGLKLSLVTKPKK 602



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 2/164 (1%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            D+ P M V G V  V   G  + L+  + A V + + SD       ++F  G+ VAG+VL
Sbjct: 435  DVRPGMPVSGTVSRVEEYGLLVALTSSIRALVPVLHASDVGTAKALRKFKAGQTVAGKVL 494

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            +V+P +K+V +TLK S   +     I    +   G    G +     +G+F++     + 
Sbjct: 495  TVDPATKKVTMTLKPSLVGS-KLPPIARTQDAVPGGRSHGVVTGARDFGVFVSFFG-GVT 552

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
            GL HVSE            ++AG+ VK ++L  D  ++ + L +
Sbjct: 553  GLAHVSECGLAADQKPPEAFQAGQVVKCRVLGADPSRKGLKLSL 596



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 7/173 (4%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            I  L P  +V   V+NV S G            V   +L         K+F   + +  R
Sbjct: 341  IGSLLPGQLVAARVRNVLSDGLLCSFLTYFSGTVDPFHLGADLAADWRKQFSPNQRLRAR 400

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV--GDIVIGQIKRVESYGLFITIEN 1365
            +L V+P SKRV +TL       +       L  + V  G  V G + RVE YGL + + +
Sbjct: 401  ILYVDPASKRVALTLHRHLISASLPVNFPMLGQVDVRPGMPVSGTVSRVEEYGLLVALTS 460

Query: 1366 T--NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +   LV + H S++           ++AG+ V  K+L VD   +++++ +K S
Sbjct: 461  SIRALVPVLHASDVG---TAKALRKFKAGQTVAGKVLTVDPATKKVTMTLKPS 510



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 22/144 (15%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +E ++   ++ GYV +VTS   F+     L  +  L+ LSD +V  P   F  G+ V  R
Sbjct: 757  VEAVAEGALLAGYVASVTSGAVFVRFLDGLTGRAGLAQLSDTFVSDPHLFFREGQSV--R 814

Query: 1308 VLSVEPLSKRVEVTLKTS--DSRTAS--QSEINNL---------------SNLHVGDIVI 1348
               V+   +R  V LK S   SR A+  QS  ++L               +   +G I  
Sbjct: 815  ATVVDAQRQRFSVALKQSLCGSRDAAYLQSLFSDLEAAEALSNDAADVDWAAFAIGGIAP 874

Query: 1349 GQIKRVESYGLFITIE-NTNLVGL 1371
            G++   + YGL   +E + ++VGL
Sbjct: 875  GEVHEAKGYGLICDLEAHADVVGL 898



 Score = 44.7 bits (104), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 22/241 (9%)

Query: 477 FVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL-------- 527
           F+ +++G V  F     LG D   +    +   Q ++ RI+   PAS+R+ L        
Sbjct: 366 FLTYFSGTVDPF----HLGADLAADWRKQFSPNQRLRARILYVDPASKRVALTLHRHLIS 421

Query: 528 -SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 586
            S  +    + + D V+ G  VSG V  V    ++V + +    +  +P  H +D +  A
Sbjct: 422 ASLPVNFPMLGQVD-VRPGMPVSGTVSRVEEYGLLVALTSS--IRALVPVLHASD-VGTA 477

Query: 587 TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYV 644
             ++          ++L +D  +  + ++ K SL+ S  +LP  A      P    HG V
Sbjct: 478 KALRKFKAGQTVAGKVLTVDPATKKVTMTLKPSLVGS--KLPPIARTQDAVPGGRSHGVV 535

Query: 645 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
               + G FV F G +TG A  S+          + +  GQ V+  +L  +     + LS
Sbjct: 536 TGARDFGVFVSFFGGVTGLAHVSECGLAADQKPPEAFQAGQVVKCRVLGADPSRKGLKLS 595

Query: 705 L 705
           L
Sbjct: 596 L 596



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 112/275 (40%), Gaps = 32/275 (11%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
            G LV A +  +    L   F   F G +    +  D   +  +    F   Q + ARI+ 
Sbjct: 347  GQLVAARVRNVLSDGLLCSFLTYFSGTVDPFHLGAD---LAADWRKQFSPNQRLRARIL- 402

Query: 999  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1058
                P  K+     L++   +++ S   +  +  + DV  G  V+G V +V+    L+ +
Sbjct: 403  -YVDPASKR---VALTLHRHLISASLPVNFPMLGQVDVRPGMPVSGTVSRVEEYGLLVAL 458

Query: 1059 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1118
            +  ++A + +L ++   +   +  R+F  G+ V G VL+++   K + + L+P   G   
Sbjct: 459  TSSIRALVPVLHASDVGTA--KALRKFKAGQTVAGKVLTVDPATKKVTMTLKPSLVGSKL 516

Query: 1119 KTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSD 1176
              +  + D          + GGR   +++G    G+ V     + G  H +E        
Sbjct: 517  PPIARTQDA---------VPGGRSHGVVTGARDFGVFVSFFGGVTGLAHVSE-------- 559

Query: 1177 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
               G    Q  P   +  GQ VKC+VL    + +G
Sbjct: 560  --CGLAADQ-KPPEAFQAGQVVKCRVLGADPSRKG 591


>gi|195389266|ref|XP_002053298.1| GJ23416 [Drosophila virilis]
 gi|194151384|gb|EDW66818.1| GJ23416 [Drosophila virilis]
          Length = 1397

 Score =  177 bits (449), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/295 (37%), Positives = 165/295 (55%), Gaps = 11/295 (3%)

Query: 1519 AKKKEKEE--REQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1575
            AK+K K E   EQ +R  EER  + +  P T D+FERLV + PNSS  WI+YM+F+LS  
Sbjct: 1102 AKEKAKAEVKEEQRLREIEERNADPNQRPETIDQFERLVLAEPNSSKSWIQYMSFLLSNT 1161

Query: 1576 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
            +V+KAR IA RA++TI  RE  E  NIW A  NLE  Y +   + V+K    AL + DP 
Sbjct: 1162 EVDKAREIARRAIKTIAFRETKELRNIWTALINLELSYNSSNFDDVLK---EALSHNDPL 1218

Query: 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR---LLKQQQEGVQAVVQ 1692
            + +L L+ + +     +     L  + +KF+   +VW  RV           + VQ  +Q
Sbjct: 1219 ETYLNLVEVLKSHNLRERLVSTLNLITRKFRTEPQVW--RVTADAYFWLGMADRVQPTLQ 1276

Query: 1693 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1752
            RAL  LP+++HI  I   A L  +N      +++ + I++ YPKR D+W +Y+D  I+  
Sbjct: 1277 RALSVLPKNQHINCIVAFAKLYAQNDDNAMAQTLLDDIVTSYPKRIDIWVLYVDMLIKSE 1336

Query: 1753 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             ++  R + ERA+   L P KM  ++KKYL++E   G E     VKQ A +YV+S
Sbjct: 1337 LIESARNVLERAVLQKLQPDKMLVIYKKYLDFEMKHGTEANAARVKQLAEQYVQS 1391



 Score =  106 bits (265), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 128/532 (24%), Positives = 234/532 (43%), Gaps = 53/532 (9%)

Query: 10  MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP---ILDNEI--EANEDNLLPTIFHV 64
           M + GVV   +   L I LPG +   A  AD  D    +  + +  + +E + L  +F V
Sbjct: 72  MLVMGVVKAADATSLQIALPGRMTARALVADISDAYARVAQSYMAGDGSEYHDLTVLFSV 131

Query: 65  GQLVSCIVLQLDDDKKEIGKRK---IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 121
           GQ+V    +     K EI +R    + LSL+ + +   L   ++++G + T  ++ I++H
Sbjct: 132 GQIVYGRAI-----KTEIPERNRMSLLLSLKPAEVNSSLHHASIKKGFIFTGAIEEIQEH 186

Query: 122 GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-----TRKVVYLSSDPD 176
           G ++  G+     F+P  + A+   I    G L+   V+ I       T + V L  D  
Sbjct: 187 GCVIETGIEGLQAFVPIADAAQQHHI----GQLIFLKVKQIQHSSAKSTCQCVRLDQD-- 240

Query: 177 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPT 235
              K   K     ++D ++PG +V  +V   L+NG+  S +   F G V+  HL     T
Sbjct: 241 ---KLKIKSQNETNLDYILPGSIVKFKVIKHLKNGLEGSIMNESFRGYVNEHHLAEALHT 297

Query: 236 TNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--------PYLLHNRAPPSHVKVGDIYD 287
                DY  +++  AR+L+V P ++ V LTLN           + +      +K G I +
Sbjct: 298 P---PDYELNEEYLARVLYVMPLTKLVYLTLNLDINVTTEKTAMEDDEQQELLKKGSIVE 354

Query: 288 QSKVVRVDR-GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 346
           +++V+R    G+ LLL+     + +   +  +     +   +  KY   S  +VR+LG+ 
Sbjct: 355 KARVLRHGTGGIVLLLNHKHKGLISYGSIKSNHKGNYDQDVVLAKYSSKSKHKVRVLGYD 414

Query: 347 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS-FGAIVQFPGGVKALCPLPH 405
            +E L      A+     ++T  D++ G +V+ +++  +S  G      G V  +    H
Sbjct: 415 VIESLYYCTDDANILNEKLYTLEDLQAGDIVQARIVKPESKIGGYNVKIGKVNGIIEQLH 474

Query: 406 MSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLI 463
           ++      P  +++VG  L  RVL +   R    ++++   +   + +L+S   A    +
Sbjct: 475 LA------PNMRYEVGQRLRCRVLDICLDRKICYLSNRNEYLNKSVKLLTSLQSAQPGSL 528

Query: 464 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 515
             G + K E     V+F +G++G   +  L         S +  GQ  K RI
Sbjct: 529 FTGTVVKCESSYVLVKFCSGIKGVLHKQRLNE----LIESTFFAGQTTKFRI 576


>gi|401421286|ref|XP_003875132.1| rRNA biogenesis protein-like protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
 gi|322491368|emb|CBZ26637.1| rRNA biogenesis protein-like protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 738

 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 161/294 (54%), Gaps = 29/294 (9%)

Query: 1534 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593
            A ER +E   P +P+EF+RL+ ++PNSS++W +YMA+ + +   E AR +AE+AL TI +
Sbjct: 442  AYERGMETAVPTSPEEFQRLLLANPNSSYIWTQYMAYHVGLQQYEAARQVAEKALSTIGV 501

Query: 1594 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1653
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 502  REQEELLNVWVAYLNIENLYGT--EESLSAVFRRAQQR------QLNQLTLFERLADIYA 553

Query: 1654 ADE-------LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRHK 1702
            A         L   M  KF+   + W R    L+ Q   G +  ++R L      L R  
Sbjct: 554  ASRKPNQLLALCRAMTGKFRTERRTWERLGIVLVDQ---GKRDQLKRTLKDMGDVLKRDD 610

Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVD 1755
                I   AI E+K+G  + GR++FEG+L + PKR+D+W+ Y DQE+ L           
Sbjct: 611  ATLAIVHIAIHEYKHGSPENGRALFEGLLRKVPKRSDVWATYTDQEMGLLNRKDPTASTL 670

Query: 1756 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
             +R +F+R ++++   K M+ +  ++L +EK  G    +E VK+ A  YV+S +
Sbjct: 671  QVRQIFQRTVAMNFSAKVMQQVLTRFLSFEKLHGTPADVESVKKCARTYVDSKI 724


>gi|406693939|gb|EKC97279.1| rRNA processing-related protein [Trichosporon asahii var. asahii
           CBS 8904]
          Length = 1499

 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 168/636 (26%), Positives = 294/636 (46%), Gaps = 43/636 (6%)

Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG------FLPRNNLAENSGIDVKPGLLLQ 156
           + V++G  +   V   ED GY +  GL + TG      F+P   + +N+G  + PG L+ 
Sbjct: 241 QDVEKGYRIVGEVLGAEDKGYRVGLGLSADTGLAGVEGFIPIEEVEKNAGGALIPGQLIP 300

Query: 157 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 216
            VV  +    +VV L+ DP T+      ++  I    L+PG + S  V +++ +G+ +  
Sbjct: 301 TVVSEVKAGGRVVKLTLDPQTLIHSSLTEVSNIGS--LLPGQLASCLVTAVVPSGLNVKI 358

Query: 217 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYLLHNR 274
             ++ GT+DI HL       + ++ YN  KK+ ARIL+  V  + R   L+  P++ +  
Sbjct: 359 CGFYDGTIDIAHL--GLGEDDIEDRYNIGKKIKARILYDTVASSERRFALSALPHIFNLA 416

Query: 275 APPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 325
           +P +          + VG      KV+RV    G++     T      +  IS +++E V
Sbjct: 417 SPVAADGETPLEIAIPVGKTLPSVKVIRVIPDWGVVC---RTDDGLEGFTHISHLSDERV 473

Query: 326 RKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
             L     ++K G+  R R++G   L+G+     +      +     ++  G V+KG V 
Sbjct: 474 PTLSNSTGQFKVGTYHRARVIGHSPLDGVMLLSFEEKVLNQVFMQVGELTIGQVLKGTVR 533

Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTH 440
            +   G  V   G V  +    H ++  +  P K+FKVGA +  RV  ++    R+ +T 
Sbjct: 534 KLSDKGLFVNVQGNVDGVVWPLHYADIRLKHPEKRFKVGASVKARVFAIEPARNRVVLTL 593

Query: 441 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
           KK+LV+S L +  S+A+ T   IT   ++KI   GC V  + G++ F P+SE   +    
Sbjct: 594 KKSLVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVAN 653

Query: 501 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMK-PTRVSEDDLVKLGSLVSGVVDVVTPNA 559
            + ++ VG+ V  RI      S+++  S     PT V+ + L ++GS VSG+V  +    
Sbjct: 654 LNDVFFVGKAVNVRITDVDEHSQKLVASVRQALPTAVAAEKL-EVGSDVSGIVAQIHAEQ 712

Query: 560 VVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NESSNLLL--- 614
           VVV +I    +   +   +L++H       ++  +K G + + L+V+  N +S L++   
Sbjct: 713 VVVTLIPSQLT-ALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVAN 771

Query: 615 -SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 673
             AK  +         +   I    V+ G V +    G  VR   ++ G    + A D  
Sbjct: 772 KRAKKGIPTGISTPARNFDAIAVGDVLPGRVISKTPQGAMVRLGKKIRGRVAPTDASD-- 829

Query: 674 RADLSKT-YYVGQSVRSNILDVNSETGRITLSLKQS 708
             DLS     V   V   +L V++E+  I LS ++S
Sbjct: 830 --DLSAPGLKVDDDVLCCVLKVDAESRAIDLSTRKS 863



 Score =  133 bits (335), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 149/561 (26%), Positives = 250/561 (44%), Gaps = 92/561 (16%)

Query: 884  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-AISETETSSSKRAKKKSSYDVGSLV 942
            K P+K+F  G SV A V A+  +    R++L LK ++ E++               GS  
Sbjct: 563  KHPEKRFKVGASVKARVFAIEPARN--RVVLTLKKSLVESDLPVP-----------GSFA 609

Query: 943  QAEITEIKPLELRLKFGIG-----FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
                 EI P  +      G     F G       ++  +N V NL   F +G+ V  RI 
Sbjct: 610  DVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRIT 669

Query: 998  AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1057
                  D+ +     ++     L  +    KL        +G  V+G V ++  E  ++T
Sbjct: 670  ------DVDEHSQKLVASVRQALPTAVAAEKL-------EVGSDVSGIVAQIHAEQVVVT 716

Query: 1058 -ISRHLKAQLFILD-SAYEPSELQEFQRRFHIGK-----------AVTGHVLSINKEKKL 1104
             I   L A L + + S +    + E ++   +G+           A +G ++  NK  K 
Sbjct: 717  LIPSQLTALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVANKRAK- 775

Query: 1105 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR-ISKILSGVGGLVVQIGPHLYGR 1163
                 +    GIS    +         I  GD++ GR ISK   G    +V++G  + GR
Sbjct: 776  -----KGIPTGISTPARNFDA------IAVGDVLPGRVISKTPQGA---MVRLGKKIRGR 821

Query: 1164 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1223
            V  T+      SD LS           G      V C VL++    R    ++LS R S 
Sbjct: 822  VAPTD-----ASDDLSA---------PGLKVDDDVLCCVLKVDAESRA---IDLSTRKS- 863

Query: 1224 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1283
                  +S+    D +     +    DL     V+G VKNV   G F+ L R + A+V++
Sbjct: 864  --RVQPDSAPAIVDAE-----INSTADLKAGQSVRGIVKNVAPNGLFVALGRSVTARVMI 916

Query: 1284 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1343
              L D +V+  +  F +G +V+G++LSV     RVE+TL+T   +  +++++  L++   
Sbjct: 917  KELFDDFVKDWKARFAVGDVVSGKILSVG--DDRVEMTLRTKPRKAGAETKL-TLADFKE 973

Query: 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKIL 1400
            G  V   +KRVES+GLF+ I+ +++ GLCH SE+S++   ++      +R  + V+  I 
Sbjct: 974  GQKVEATVKRVESFGLFLRIDGSDVSGLCHRSEISDNKKQDVSQALKGFREKDHVRAVIT 1033

Query: 1401 KVDKEKRRISLGMKSSYFKND 1421
             +DKEK +I+  +K+S+F +D
Sbjct: 1034 SIDKEKGKINFSIKASHFSDD 1054



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 119/264 (45%), Gaps = 22/264 (8%)

Query: 468 ITKIEKHGCFVRFYNGVQGFAPRSELGLD--PGCEPSS-MYHVGQVVKCRIMSSIPASRR 524
           I  I   G   R  +G++GF   S L  +  P    S+  + VG   + R++   P    
Sbjct: 443 IRVIPDWGVVCRTDDGLEGFTHISHLSDERVPTLSNSTGQFKVGTYHRARVIGHSPLDGV 502

Query: 525 INLSFMMKP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
           + LSF  K       +V E   + +G ++ G V  ++   + V V  +G   G +   H 
Sbjct: 503 MLLSFEEKVLNQVFMQVGE---LTIGQVLKGTVRKLSDKGLFVNV--QGNVDGVVWPLHY 557

Query: 580 AD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 635
           AD    H E    + + +K      ++  ++   + ++L+ K SL+ S   +P   + + 
Sbjct: 558 ADIRLKHPEKRFKVGASVKA-----RVFAIEPARNRVVLTLKKSLVESDLPVPGSFADVT 612

Query: 636 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
              +    V  I++ GC V   G L  F P+S+A     A+L+  ++VG++V   I DV+
Sbjct: 613 AGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDVD 672

Query: 696 SETGRITLSLKQSCCSSTDASFMQ 719
             + ++  S++Q+  ++  A  ++
Sbjct: 673 EHSQKLVASVRQALPTAVAAEKLE 696



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 87/166 (52%), Gaps = 8/166 (4%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            ++ +L+   +++G V+ ++ KG F+ +   +D  V   + +D  ++ PEK F +G  V  
Sbjct: 518  QVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLHYADIRLKHPEKRFKVGASVKA 577

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEI---NNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            RV ++EP   RV +TLK    ++  +S++    + +++  G+I    + ++   G  + +
Sbjct: 578  RVFAIEPARNRVVLTLK----KSLVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVDL 633

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
                L      SE S ++V N+  ++  G+ V V+I  VD+  +++
Sbjct: 634  FG-GLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDVDEHSQKL 678



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 118/539 (21%), Positives = 209/539 (38%), Gaps = 125/539 (23%)

Query: 961  GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1020
            G  G  HI+ ++D++   + N    FK+G    AR+I  S    +    L  LS +  +L
Sbjct: 458  GLEGFTHISHLSDERVPTLSNSTGQFKVGTYHRARVIGHS---PLDGVML--LSFEEKVL 512

Query: 1021 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1080
                  +++  +  +++IGQ + G V K+ ++   + +  ++   ++ L   Y    L+ 
Sbjct: 513  ------NQVFMQVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLH--YADIRLKH 564

Query: 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLR--------PFQDGISDKTVDISNDNMQTFI 1132
             ++RF +G +V   V +I   +  + L L+        P     +D T            
Sbjct: 565  PEKRFKVGASVKARVFAIEPARNRVVLTLKKSLVESDLPVPGSFADVTA----------- 613

Query: 1133 HEGDIVGGRISKILSG------VGGLVVQIGPHLYGRVHFTELKNI-----CVSDPLSGY 1181
              G+I    +SKIL         GGL   +        +   L ++      V+  ++  
Sbjct: 614  --GEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDV 671

Query: 1182 DEGQFDPLSGYDEG--QFVKCKVLEISRTVRG---TFHVE----LSLRSSLDGMSSTN-- 1230
            DE     ++   +     V  + LE+   V G     H E      + S L  + S    
Sbjct: 672  DEHSQKLVASVRQALPTAVAAEKLEVGSDVSGIVAQIHAEQVVVTLIPSQLTALLSLANL 731

Query: 1231 SSDLSTDVDTPGKHL---EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1287
            S+     VD   K L   EK+EDL   ++V    KN TS    I+++ K   K + + +S
Sbjct: 732  SNHRGMGVDELRKSLKVGEKLEDL---VVVS---KNATS--GLIIVANKRAKKGIPTGIS 783

Query: 1288 DGYVESPEKEF---PIGKLVAGRVLSVEP------LSKRVE------------------- 1319
                 +P + F    +G ++ GRV+S  P      L K++                    
Sbjct: 784  -----TPARNFDAIAVGDVLPGRVISKTPQGAMVRLGKKIRGRVAPTDASDDLSAPGLKV 838

Query: 1320 -----------------VTLKTSDSRTASQS-------EINNLSNLHVGDIVIGQIKRVE 1355
                             + L T  SR    S       EIN+ ++L  G  V G +K V 
Sbjct: 839  DDDVLCCVLKVDAESRAIDLSTRKSRVQPDSAPAIVDAEINSTADLKAGQSVRGIVKNVA 898

Query: 1356 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              GLF+ +   ++     + EL +D V + +  +  G+ V  KIL V  ++  ++L  K
Sbjct: 899  PNGLFVAL-GRSVTARVMIKELFDDFVKDWKARFAVGDVVSGKILSVGDDRVEMTLRTK 956



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 179/431 (41%), Gaps = 59/431 (13%)

Query: 5    NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHV 64
            +++AG     VV+++ +K  ++ L GGLR     ++A    + N         L  +F V
Sbjct: 610  DVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVAN---------LNDVFFV 660

Query: 65   GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
            G+ V+  +  +D+  +     K+  S+R + L   ++ E ++ G  ++  V  I     +
Sbjct: 661  GKAVNVRITDVDEHSQ-----KLVASVRQA-LPTAVAAEKLEVGSDVSGIVAQIHAEQVV 714

Query: 125  LHFGLPSFTGFLPRNNLAENSGIDV-------KPGLLLQG-VVRSIDRTRKVVYLSSD-- 174
            +       T  L   NL+ + G+ V       K G  L+  VV S + T  ++ +++   
Sbjct: 715  VTLIPSQLTALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVANKRA 774

Query: 175  ----PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
                P  +S    ++   I++  ++PG ++S   Q     G M+       G V      
Sbjct: 775  KKGIPTGIS-TPARNFDAIAVGDVLPGRVISKTPQ-----GAMVRLGKKIRGRVAPTDAS 828

Query: 231  NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV-----KVGDI 285
            +       K D +    V   +L VD  SRA+ L+     +   + P+ V        D+
Sbjct: 829  DDLSAPGLKVDDD----VLCCVLKVDAESRAIDLSTRKSRVQPDSAPAIVDAEINSTADL 884

Query: 286  YDQSKVVRVDRGL---GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 342
                 V  + + +   GL + +     S  A V I ++ ++ V+  + ++  G  V  +I
Sbjct: 885  KAGQSVRGIVKNVAPNGLFVALGR---SVTARVMIKELFDDFVKDWKARFAVGDVVSGKI 941

Query: 343  L--GFRHLE-GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG-VK 398
            L  G   +E  L T   KA A   L  T +D K G  V+  V  V+SFG  ++  G  V 
Sbjct: 942  LSVGDDRVEMTLRTKPRKAGAETKL--TLADFKEGQKVEATVKRVESFGLFLRIDGSDVS 999

Query: 399  ALCPLPHMSEF 409
             LC   H SE 
Sbjct: 1000 GLC---HRSEI 1007



 Score = 40.8 bits (94), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 104/553 (18%), Positives = 221/553 (39%), Gaps = 89/553 (16%)

Query: 917  KAISETETSSSKRAK-----KKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 968
            KA +E++ + ++R K     ++ SY     G+LV A +  + PL L +       G I I
Sbjct: 90   KATAESDAAKAERDKDTIRVEELSYKRLVPGTLVLARVHTVLPLHLVVSMPNNLLGHIPI 149

Query: 969  TEVNDDKSNVVE---------------------NLFSNFKIGQTVTARIIAKSNKPDMKK 1007
            TEV++  +  +                       L   F+ GQ +  R+I  +  P   +
Sbjct: 150  TEVSNTLTAALNADIDAMSEDEDEEDEEKEGAPELTDIFRPGQYIPTRVI--NTFPTASQ 207

Query: 1008 SFLWELSIKPSMLTVSEIGSKLLFEEC-------DVSIGQRVTGYVYKVDNEWALLTISR 1060
            +F+ +  +  +    + +    + E+        DV  G R+ G V   +++   + +  
Sbjct: 208  AFIAQYPVSETTRLAARVELTAVPEKINLDVAKQDVEKGYRIVGEVLGAEDKGYRVGLGL 267

Query: 1061 HLKAQLFILDSAYEPSELQEFQRRFHI-GKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
                 L  ++      E+++      I G+ +   V  +    ++++L L P Q  I   
Sbjct: 268  SADTGLAGVEGFIPIEEVEKNAGGALIPGQLIPTVVSEVKAGGRVVKLTLDP-QTLIHSS 326

Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGV---GGLVVQIGPHLYGRVHFTELKNICVSD 1176
              ++SN         G ++ G+++  L       GL V+I     G +    L       
Sbjct: 327  LTEVSN--------IGSLLPGQLASCLVTAVVPSGLNVKICGFYDGTIDIAHL------- 371

Query: 1177 PLSGYDEGQFDPLSGYDEGQFVKCKVL--EISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1234
                   G+ D    Y+ G+ +K ++L   ++ + R      LS    +  ++S  ++D 
Sbjct: 372  -----GLGEDDIEDRYNIGKKIKARILYDTVASSER---RFALSALPHIFNLASPVAADG 423

Query: 1235 STDVDTP---GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1291
             T ++     GK L  ++           ++ +   G        L+    +S+LSD  V
Sbjct: 424  ETPLEIAIPVGKTLPSVK----------VIRVIPDWGVVCRTDDGLEGFTHISHLSDERV 473

Query: 1292 ES---PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1348
             +      +F +G     RV+   PL     V L + + +  +Q     +  L +G ++ 
Sbjct: 474  PTLSNSTGQFKVGTYHRARVIGHSPLDG---VMLLSFEEKVLNQV-FMQVGELTIGQVLK 529

Query: 1349 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1408
            G ++++   GLF+ ++  N+ G+      ++  + + E  ++ G  VK ++  ++  + R
Sbjct: 530  GTVRKLSDKGLFVNVQG-NVDGVVWPLHYADIRLKHPEKRFKVGASVKARVFAIEPARNR 588

Query: 1409 ISLGMKSSYFKND 1421
            + L +K S  ++D
Sbjct: 589  VVLTLKKSLVESD 601


>gi|224011034|ref|XP_002294474.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969969|gb|EED88308.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 259

 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/257 (41%), Positives = 157/257 (61%), Gaps = 14/257 (5%)

Query: 1559 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1618
            NSS VWIKYMAF LS+AD++ AR++A RA + I  REE EKLN+W A   LE +YGN  +
Sbjct: 1    NSSEVWIKYMAFHLSLADIDSARTVANRAFERIVFREEGEKLNVWTALLTLELKYGN--D 58

Query: 1619 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1678
            +++     RA +  +PK+   + +G  +     K AD++  KM KKFK    VW+   Q 
Sbjct: 59   KSLQATVDRACKQNNPKQA--SSIGSNDLVTSTKRADDMFTKMCKKFKSKKTVWIAHFQY 116

Query: 1679 LLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1737
            LLK  + E   A+++R+L SLP +KH++ +S+ A +EF+ G A+RGR++F  +L ++PKR
Sbjct: 117  LLKGSRHEEAHALLKRSLQSLPNYKHVEVMSKFAQMEFELGSAERGRTIFNALLEKHPKR 176

Query: 1738 TDLWSIYLDQEIRLGDVDLIRGLF---------ERAISLSLPPKKMKFLFKKYLEYEKSV 1788
             DL  + +D+EI+ GD+   R LF         ER        K+MK LFKK+   E+  
Sbjct: 177  MDLLFVNIDKEIKSGDILKARALFDSVVNPVSNERKQKFKFSDKQMKSLFKKWYRMEEEH 236

Query: 1789 GEEERIEYVKQKAMEYV 1805
            G+EE  E VK++A  +V
Sbjct: 237  GDEESQERVKEEARTFV 253


>gi|281206551|gb|EFA80737.1| hypothetical protein PPL_06323 [Polysphondylium pallidum PN500]
          Length = 926

 Score =  173 bits (439), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 141/555 (25%), Positives = 255/555 (45%), Gaps = 57/555 (10%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT--- 60
           +N   G+ + G +  ++  DL   LP G +G  +  +  D     +        +P+   
Sbjct: 163 KNFYTGLVVMGCLESISNMDLTFSLPFGAKGYVKFNEISDEFTKYQESVMRSKDIPSNFV 222

Query: 61  -----------IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGM 109
                      +F +GQ++   ++ L D+ K  G   +  +LR  ++  G +  T +EGM
Sbjct: 223 KLDTIMNRIKGMFMIGQIMKVAIVGLTDNAKSFG---LHCTLRTDVVNVGSTTSTFKEGM 279

Query: 110 VLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNL-----AENSGID-------VKPGLLLQ 156
            +   VKS+ED GYI+ FG      GF+  +N       + +G         +  G  L+
Sbjct: 280 TIFGEVKSVEDRGYIVSFGKDVEAKGFIEHSNTRYFWPVQGAGTQWNENECRLAQGQPLE 339

Query: 157 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 216
            V+  ID       L++    +++    D   +++D +  GMMV T++  I  NG+ ++F
Sbjct: 340 AVITEIDSATNTFKLNASHPLINRSTVTDSAVVTMDSIKAGMMVDTKIAKIYRNGISVTF 399

Query: 217 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP 276
           L YF G +   HL+         ++Y+    + ARIL+VD   + +GL+   ++L  R  
Sbjct: 400 LDYFAGDIFFTHLEKPL------SEYSVSMNLKARILYVDQIDKKIGLSALSHVLGLRPY 453

Query: 277 P-SHVKVGDIYDQS--KVVRVDRGLGLLLDIPSTPVSTP--AYVTISDVAEEEVRKLEKK 331
           P   +K G I+  S  ++ RVD  L + + I S+  S P   Y+    + + +V  L+  
Sbjct: 454 PFGQIKPGAIFKSSEIQITRVD-PLEMYVSINSSQNSQPLKGYIHHKKIPDVKVDNLKSI 512

Query: 332 YK-----EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG--KVIAV 384
           Y      +  C   RI+   H++ + T  L  S     V+ + ++ PGM++    K+I  
Sbjct: 513 YHPNGKFDKDC---RIIHVDHVDAMVTLTLSKSDLSKEVYNYYNLFPGMIINAVIKIIRP 569

Query: 385 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 442
           DS    V+    +  + P  ++++  +  P KKFKVG  +  RVL    + KR+ +T K 
Sbjct: 570 DSIE--VEVSPSIYGVVPKHNIADTILSDPSKKFKVGQAVRCRVLSCVPQYKRLMLTMKN 627

Query: 443 TLVKSKLAILSSYAEATDRLITHGWITKIEKHG-CFVRFYNGVQGFAPRSELGLDPGCEP 501
           +L+ S L I ++ A      I+HG+I+ I+ +   FV F++   G   +  L   P    
Sbjct: 628 SLINSTLPIFTNSANVNVGDISHGYISNIKDNSHIFVTFFDKCFGIVQKKHLSNLPVTMI 687

Query: 502 SSMYHVGQVVKCRIM 516
              + +GQVV  +++
Sbjct: 688 EDHFKIGQVVAAQVI 702



 Score = 60.8 bits (146), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 134/625 (21%), Positives = 244/625 (39%), Gaps = 107/625 (17%)

Query: 893  GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPL 952
            G+ + +  ++      A +LL  L+A     +  + R   K+ Y  G +V   +  I  +
Sbjct: 126  GKKMPSDYLSKKQEQDAQKLLPFLRA---NFSKDANRLLFKNFY-TGLVVMGCLESISNM 181

Query: 953  ELRLKFGIGFHGRIHITEVNDDKSNVVENLF------SNFKIGQTVTARI---------- 996
            +L      G  G +   E++D+ +   E++       SNF    T+  RI          
Sbjct: 182  DLTFSLPFGAKGYVKFNEISDEFTKYQESVMRSKDIPSNFVKLDTIMNRIKGMFMIGQIM 241

Query: 997  -IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1055
             +A     D  KSF    +++  ++ V    S   F+E     G  + G V  V++   +
Sbjct: 242  KVAIVGLTDNAKSFGLHCTLRTDVVNVGSTTS--TFKE-----GMTIFGEVKSVEDRGYI 294

Query: 1056 LTISRHLKAQLFILDSA---YEP-----SELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1107
            ++  + ++A+ FI  S    + P     ++  E + R   G+ +   +  I+      +L
Sbjct: 295  VSFGKDVEAKGFIEHSNTRYFWPVQGAGTQWNENECRLAQGQPLEAVITEIDSATNTFKL 354

Query: 1108 -VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1166
                P    I+  TV  S       I  G +V  +I+KI     G+ V    +  G + F
Sbjct: 355  NASHPL---INRSTVTDSAVVTMDSIKAGMMVDTKIAKIYRN--GISVTFLDYFAGDIFF 409

Query: 1167 TEL------------------------KNICVSD-----PLSGYDEGQFDPLSGY--DEG 1195
            T L                        K I +S       L  Y  GQ  P + +   E 
Sbjct: 410  THLEKPLSEYSVSMNLKARILYVDQIDKKIGLSALSHVLGLRPYPFGQIKPGAIFKSSEI 469

Query: 1196 QFVKCKVLEI---------SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
            Q  +   LE+         S+ ++G  H +      +D + S    +   D D    H++
Sbjct: 470  QITRVDPLEMYVSINSSQNSQPLKGYIHHKKIPDVKVDNLKSIYHPNGKFDKDCRIIHVD 529

Query: 1247 KIE----------DLS----------PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1286
             ++          DLS          P MI+   +K +      + +S  +   V   N+
Sbjct: 530  HVDAMVTLTLSKSDLSKEVYNYYNLFPGMIINAVIKIIRPDSIEVEVSPSIYGVVPKHNI 589

Query: 1287 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1346
            +D  +  P K+F +G+ V  RVLS  P  KR+ +T+K S    ++     N +N++VGDI
Sbjct: 590  ADTILSDPSKKFKVGQAVRCRVLSCVPQYKRLMLTMKNS-LINSTLPIFTNSANVNVGDI 648

Query: 1347 VIGQIKRV-ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKE 1405
              G I  + ++  +F+T  +    G+     LS   V  IE  ++ G+ V  ++  + + 
Sbjct: 649  SHGYISNIKDNSHIFVTFFD-KCFGIVQKKHLSNLPVTMIEDHFKIGQVVAAQV--IGRN 705

Query: 1406 KRRISLGMKSSYFKNDADNLQMSSE 1430
            K  + L +  S  + + D  Q+  E
Sbjct: 706  KFSLDLSLVISNLEEEEDQPQVKDE 730



 Score = 45.4 bits (106), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 604
           G +++ V+ ++ P+++ V V    Y  G +P  ++AD +      K  +       ++L 
Sbjct: 557 GMIINAVIKIIRPDSIEVEVSPSIY--GVVPKHNIADTILSDPSKKFKVGQAVRC-RVLS 613

Query: 605 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG-CFVRFLGRLTGF 663
              +   L+L+ K SLINS   + +++++++   + HGY+ NI +    FV F  +  G 
Sbjct: 614 CVPQYKRLMLTMKNSLINSTLPIFTNSANVNVGDISHGYISNIKDNSHIFVTFFDKCFGI 673

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
             +    +     +   + +GQ V + ++  N
Sbjct: 674 VQKKHLSNLPVTMIEDHFKIGQVVAAQVIGRN 705


>gi|195035980|ref|XP_001989449.1| GH18799 [Drosophila grimshawi]
 gi|193893645|gb|EDV92511.1| GH18799 [Drosophila grimshawi]
          Length = 1396

 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 161/289 (55%), Gaps = 21/289 (7%)

Query: 1529 QEIRAAEERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1587
            Q +R  EER  +    P T D+FERLV + PN+S  WI+YM+F+LS  ++ KAR IA RA
Sbjct: 1113 QRLRKIEERNADPSQQPETIDQFERLVIAEPNNSKSWIQYMSFLLSNTEIVKAREIARRA 1172

Query: 1588 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1647
            ++TI  RE  E  NIW++  NLE  Y +   + V+K    AL + DP + +L L+ + + 
Sbjct: 1173 IKTIAFRETKELRNIWISLINLELSYNSSNFDDVLK---EALSHNDPLETYLNLVDVLKS 1229

Query: 1648 TEQNKLADELLYKMIKKFKHSCKVW---------LRRVQRLLKQQQEGVQAVVQRALLSL 1698
                +     L  +++KF+   +VW         L  V R        VQ  +QRAL  L
Sbjct: 1230 HNLKERLINTLNIIMRKFRTELQVWKVSADAYFWLGLVDR--------VQPTLQRALNVL 1281

Query: 1699 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1758
            P+++HI  I   A L  ++      +++ +GI++ YPKR D+W +Y+D  I+ G ++  R
Sbjct: 1282 PKNQHINCIVAFAKLYAQHEDNAMAQTLLDGIVTSYPKRIDIWVLYVDMLIKSGLIESAR 1341

Query: 1759 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
             + ERA+   L P KM  ++KKYL++E+  G E     VKQ A +YV+S
Sbjct: 1342 NVLERAVLQKLQPDKMLVIYKKYLDFEEKHGTEGNAARVKQLAEQYVQS 1390



 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 117/525 (22%), Positives = 229/525 (43%), Gaps = 42/525 (8%)

Query: 10  MKLWGVVAEVNEKDLVICLPGGLRGLARA-----ADALDPILDNEIEANEDNL--LPTIF 62
           M + GVV       L I LPG  R +ARA     +DA   +  + +  ++     L  +F
Sbjct: 72  MLVMGVVKSATATSLQIALPG--RMMARALVADISDAYARVAQSYMGGDDSEYHDLSELF 129

Query: 63  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
             G++V    ++   D++E     + L+L+ + +   L   ++++G + T  ++ I++HG
Sbjct: 130 KEGRIVYGRAMK--TDRQEGKSSTLLLTLKPADVNSSLRHGSIKKGFIFTGAIEEIQEHG 187

Query: 123 YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVVYLSSDPDTVSKC 181
            ++  G+     F+P  ++A+   I     L ++ +  + +R T + + L  D     K 
Sbjct: 188 CVIETGIQGLQAFMPNEDVAQQHHIGELIFLKVKQIQHNAERSTCQCIQLEQD-----KL 242

Query: 182 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKN 240
             K     ++D ++PG +V  +V   L+NG+  S +   F G V+  +L     T     
Sbjct: 243 KIKSQNETNLDYILPGSIVKFKVSKQLKNGLEGSIMNESFRGYVNEHYLSEALYTP---Q 299

Query: 241 DYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVGDIYDQSKVVRVD 295
           DY  +++  AR+L+V P ++ V LT N  +               K G I ++++V+R  
Sbjct: 300 DYEVNEEYLARVLYVMPLTKLVYLTFNLNIGVTAEQEAADEEELPKKGTIVEKARVLRHG 359

Query: 296 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK--LEKKYKEGSCVRVRILGFRHLEGLAT 353
            G G++L +        +Y +I    +    +  +  KY   S   VR+LG+  +E L  
Sbjct: 360 TG-GIILLLNRKHKGLISYSSIKSNFKGNYDQDVVLSKYSNKSKHTVRVLGYDVIESLYY 418

Query: 354 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS-FGAIVQFPGGVKALCPLPHMSEFEIV 412
                +     ++   D+  G +V  +++  DS  G      G V  +     ++     
Sbjct: 419 CTDNPNVVNEKLYMLDDLLAGDIVSARIVKPDSKIGGYCVKIGNVNGIIEQMQLA----- 473

Query: 413 KPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 470
            P   +++G  L  RVL + ++R    ++++   +     +L++   A    +  G + K
Sbjct: 474 -PNVHYEIGQCLRCRVLDICTERKICYLSNRSEYLSKSAKLLTTLQSAHSGNLFTGTVVK 532

Query: 471 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 515
            E     V+F NG++G   +  L    G   ++ +  GQ  K RI
Sbjct: 533 CEPTYILVKFCNGLKGVLHKQRLN---GLMEATFFE-GQTTKFRI 573


>gi|82793865|ref|XP_728209.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
 gi|23484449|gb|EAA19774.1| rrp5 protein homolog [Plasmodium yoelii yoelii]
          Length = 437

 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 160/286 (55%), Gaps = 29/286 (10%)

Query: 1547 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY 1606
            P ++E+L+ S  N S +WI Y+ + L   ++++AR++AERAL+TI+I    EKLNI++ Y
Sbjct: 151  PYDYEKLLVSEKNKSTIWISYIVYYLEKGNIQEARNVAERALKTIDIHLIEEKLNIYLCY 210

Query: 1607 FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1666
             N+E  YG+   E    +F+RAL   + K ++L  + + +  ++     EL  + IKKFK
Sbjct: 211  INMECAYGDNLNE----IFKRALLVNNEKSIYLHTMNILKMNKKYNELKELCEEAIKKFK 266

Query: 1667 HSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1724
            +S K+W R ++ L      +E    ++ ++L +LP+ KH+  I   A  E+K    +RG+
Sbjct: 267  YSKKIWTRYLELLHNTLNDEEYAHNILLKSLHALPKRKHLNIIINAARFEYKYSNIERGK 326

Query: 1725 SMFEGILSEYPKRTDLWSIYLDQEIR-----------------------LGDVDLIRGLF 1761
            + FE ++ EYPKR+D+W  YLD  I                        L ++  IR +F
Sbjct: 327  NYFEKLIQEYPKRSDIWFTYLDIHINSLTKGKKNENDDENKKKKIKKLTLNELQFIRNIF 386

Query: 1762 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            ER +S+    + MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 387  ERFLSIKFKTRVMKMIFTKWLLFEKNHGSVNTQKMVQKKAYDYVES 432


>gi|340503389|gb|EGR29983.1| programmed cell death 11, putative [Ichthyophthirius multifiliis]
          Length = 2032

 Score =  171 bits (434), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 331/1508 (21%), Positives = 624/1508 (41%), Gaps = 217/1508 (14%)

Query: 31   GLRG------LARAADALDPILDNEIEANEDNLLPTIFHVGQ-LVSCIVLQLDDDKKEIG 83
            GL+G      L+R   A   I D   E NE++ L  I++ G+ L+  IV  + +    I 
Sbjct: 137  GLKGQFLIVNLSRNKKAFLTIADAVEEKNEESDL-RIYNQGEYLIGEIVNSIKEGNSNI- 194

Query: 84   KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRN-NL 141
                  S++ S++ +GL    + E M+L   V + E++G  + F     + GFL ++ N+
Sbjct: 195  ------SIKPSVVNEGLQFNEIYENMLLQGKVLTKEEYGIKVVFHTSQQYIGFLKKDKNV 248

Query: 142  AENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID-------- 192
             E+    D++ G +    V   +  +K++YLS    T    + + +   SID        
Sbjct: 249  CEDDQYEDLEEGRVYMFRVEKKENNKKLLYLSLKYTTQE--IKESILNPSIDIEDGSDFH 306

Query: 193  -LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 251
             L  PG +V+  +  +L NG+++ F   F G +   HL N  P +     Y   +++ AR
Sbjct: 307  HLAKPGNLVNCLIIKVLSNGLVVRFFKQFIGFIFEDHLDNNQPES-----YKVKERILAR 361

Query: 252  ILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV--GDIYDQS-KVVRVDRGLGLLLDIPSTP 308
            I+  +   + + L+     +  +A     K   GD++ Q  K+ +V  G   L+ I +T 
Sbjct: 362  IIAANFDQKHINLSAKKVHVDLQAFNQSYKYKPGDVFTQGFKIKKVLYGDSYLVKIQNTS 421

Query: 309  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 368
            +           A++E  K  + Y +   ++  I  F H             F   V   
Sbjct: 422  IDNGFLHKNQLHADKESFKEGQNYTKALKLK-EINYFEHFPIFTA----KEEFVKNVKNW 476

Query: 369  SDVKPGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK---FKV 420
            +D++PGMV+  KV  +     + +   V+    +K +    +  +     P  K   FK 
Sbjct: 477  TDLRPGMVLNVKVEKIIQGHQNQYKVKVEINENIKGIIDYLNTQD----HPQSKNLNFKE 532

Query: 421  GAELVFRVLGV--KSKRITVTHKKTLVKS-KLAILSSYAEATDRLITHGWITKIEKHGCF 477
            G  +  R+L V  + K++ +T K+TLV + +  I+ S+          G+I+     G  
Sbjct: 533  GKRVTVRILSVNLEEKKLKLTAKQTLVNAPEDCIIKSWENIQQNNKYLGYISGKTDFGYI 592

Query: 478  VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM------- 530
            ++F+N V+G     ++  +   +  + Y +GQ+++  ++   P ++++ LS         
Sbjct: 593  IQFFNNVKGLLTYKDIE-NLNKKNRNDYKIGQILETYVVFINPLNQKLALSLTEKGFQEA 651

Query: 531  --MKPTRVSEDDLVKLGSLVSGVVDV-----------VTPNAVV--VYVIAKGYSKGTIP 575
               K    S   + ++ SL +  V++           V  N +   V V+     K  +P
Sbjct: 652  QNQKKNNTSRKTVFEMQSLNNEDVELNVNEGDICEYKVDSNNIYKDVIVLFNENHKAILP 711

Query: 576  TEHLADHLEHATVMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASHI 634
             EHL+D   H  ++   ++      +  +++   + N+L+SAK SL+++    P+    I
Sbjct: 712  LEHLSDFQWHYEILNEHLRSTKGSLKCKIINIFPNKNVLVSAKASLLSNMN--PNCVEDI 769

Query: 635  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV-GQSVRSNILD 693
                +  GY+      G  V+F  R+  F  +    +  + +   +  V  +++ +N ++
Sbjct: 770  KNGYIYTGYIDRGARKGIVVKFNERIKIFVGKESFEENVQFNTYDSVAVLVKNIENNKIN 829

Query: 694  ---VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG 750
               +N    R  +S K S  S+          L  E+ A+LQ         K  + F +G
Sbjct: 830  ATLLNENIFRHKMSKKISFFSN----------LFTEQYAVLQDKNK-----KVWQKFKVG 874

Query: 751  SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES------GSVIQAAILDVAK 804
            + +   VH   DFG++   E +  + GFI    L     +       G  IQ  I+D+  
Sbjct: 875  NYLNTTVHIIKDFGIITKIEGNDSLTGFILIEHLMNNEAQQKIEIWEGKKIQCKIIDIDF 934

Query: 805  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEI---VKENYL 861
             + ++DL +   F+   ++  +N+Q   +          G  Q +  I E+   V++N+ 
Sbjct: 935  EKEVLDL-IPVDFLP-LKQLINNKQNLDEFFN-------GNFQNIPIIEEVKVLVEKNHY 985

Query: 862  VLSLPEYNHSIGYASVSDYNTQKFPQKQF----LNGQSVIATVMALPSSSTAGRL----L 913
            ++ + +  + I Y + ++ N  +  +K F     N + V   ++      +  +     L
Sbjct: 986  LICIIQNTNIICYVNTNNINNIQHEKKYFNDKIYNVRLVNKDLLDKKKQQSINKSTYVPL 1045

Query: 914  LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 973
               K I   +           +   G  V  +I + +   L ++     +G++H T+++D
Sbjct: 1046 YEQKVIRREQNQDQINNTSHVNLVPGEKVSGKILKKQGNNLHVQLRGKLYGKLHKTQLDD 1105

Query: 974  DKSNVVENLFSNFKIGQTVTARII-AKSNKPDMKKSFLWELS--IKPSMLTVSEIGSKLL 1030
             K       F  F+  + +  +I+  K N+ ++    L  LS  +K   L  +   S+  
Sbjct: 1106 QKQ------FGKFQENELIQCKILYVKKNEKNIDIE-LTALSCHLKADFLDENNYLSQYE 1158

Query: 1031 FEECDVSIGQRVTGYVYKVDNE-----WALLTISRHLKAQLFILDSAYEP-SELQEFQRR 1084
                + +I Q+  G V  +D       +  LT S       F L     P S L+  + +
Sbjct: 1159 STFQEKNINQKFLGLVKSIDKSSIHPIYVELTNSHSGYVSAFDL-----PFSHLENIEDK 1213

Query: 1085 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1144
            + IG      ++ I + KK L+ + R    GI     ++S         +G ++  +I K
Sbjct: 1214 YSIGNLCDWKIVGIQENKKGLKNI-RLLPAGI-----ELSE------YKQGTLLNVKILK 1261

Query: 1145 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1204
              +  GG+ VQI    +  +H +E   IC        DE +  P   ++ GQ+ K ++LE
Sbjct: 1262 -KNAQGGIRVQISDEKFTNIHISE---IC--------DEWEGVPAEHFESGQYTKGRILE 1309

Query: 1205 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE------KIE--------- 1249
                 R   +V++SLR ++     TN ++    +   G  +E      ++E         
Sbjct: 1310 -----RDDENVQISLRQAV-----TNENNWKKALGPSGNTIEYKKIFQEVEKQGDLRNRL 1359

Query: 1250 ------DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                   L   MI  GY+     KGCF+ +S     +V L  LSD Y+E P+  F   KL
Sbjct: 1360 IKLGQGSLKQGMIFVGYINQTNDKGCFVNISYNTIIRVGLQELSDDYLEKPQISFYKNKL 1419

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFIT 1362
            V GR+  ++   K +E +L+ S  +       N +   + V  +V+G  +   S    + 
Sbjct: 1420 VVGRITDIKQDGK-IEGSLRDSIVKFGFSLNENKIKQGMTVKGVVVGHYQGKAS----VA 1474

Query: 1363 IENTNLVGLCHVSELS---EDHVDNIETIYRAGEKVKVKILKVDKE-KRRISLGMKSSY- 1417
            I+     G     +     E  +  +E +   G +V  K++K +KE K RI LG    Y 
Sbjct: 1475 IQGCKFRGSLDKDDTDFTEEQRMGFVEKLLPLGSQVLAKVIKFEKEPKVRIILGNSQKYI 1534

Query: 1418 --FKNDAD 1423
              F N+ D
Sbjct: 1535 QKFSNEVD 1542


>gi|270007539|gb|EFA03987.1| hypothetical protein TcasGA2_TC014136 [Tribolium castaneum]
          Length = 1062

 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 178/304 (58%), Gaps = 17/304 (5%)

Query: 1518 HAKKKEK---EEREQEIRAAEERL--LEKD------APRTPDEFERLVRSSPNSSFVWIK 1566
             +KKK+K    ER +  +  EER+  +E +       P++ ++F+RL+ ++PNSS +W++
Sbjct: 758  QSKKKKKLTPAERAEIAKKEEERISKIENELADSTIPPQSAEQFDRLLLANPNSSKLWLQ 817

Query: 1567 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1626
            YM+  ++  +++KAR++ +RAL TIN+    EK N+W+A  NLEN YG   +E+  K F+
Sbjct: 818  YMSMHIATTELDKARAVGKRALDTINMTLVKEKYNVWIALLNLENMYGT--KESFDKTFE 875

Query: 1627 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR--RVQRLLKQQQ 1684
             A++  D  +++L ++ +   + + +  +E + K+  K K + K+WL   R+   L Q +
Sbjct: 876  EAVRCNDSLEIYLNVIQMLATSGKLQEMEEKIKKVRAKEKQNTKMWLEISRIYYSLGQFK 935

Query: 1685 EGVQAVVQRALLS-LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1743
            E  + V + AL S L + +    I +  I+EF+ G  D+  + FE IL  YP + ++W I
Sbjct: 936  EA-RNVKESALKSILDKKRQFDLIVKFGIMEFQLGELDQAVANFETILDTYPSKVNIWII 994

Query: 1744 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803
            Y+DQ +R  + +  R   ERAIS     K MK LF+K++ +E+  G  E +E +K KA E
Sbjct: 995  YVDQLVRKKNFEAARKTLERAISQKFAMKTMKVLFQKFISFEEQYGSPESVEDIKSKAKE 1054

Query: 1804 YVES 1807
            Y+ S
Sbjct: 1055 YLAS 1058



 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 183/416 (43%), Gaps = 27/416 (6%)

Query: 189 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND-YNQHKK 247
           +SI  L+PGM V   V+ IL +G+           VD      TF  +  K +   + K 
Sbjct: 5   LSISDLIPGMKVDFFVEEILPHGIKGQLAENCYAYVD-----ETFTFSRIKKERIKEGKS 59

Query: 248 VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 307
           + A +LFV+P ++   L+L       + P   + +G +     +  V +GL L L+   T
Sbjct: 60  IPAYVLFVEPVTKVTYLSLRGL---EKLPEPELTIGQVCSAQILYNVPKGLYLQLNQTET 116

Query: 308 PVSTPAYV--TISDVAEEE-VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGL 364
              +   +  T+   A+ + V  + KKY  GS  + R+L + H++ L     +    +  
Sbjct: 117 GFISNKRLLKTLPKGADVDIVSAIRKKYPNGSRHQCRVLDYNHMQQLYICTFEKQVIKEK 176

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK-KFKVGAE 423
           +FT SD+K G  V  +V  V + G I +  G V+   P   +S  +  +  K KF VG  
Sbjct: 177 IFTVSDLKIGQAVTAQVTKVVTNGLITKV-GHVQGFVPNLQLSNAKFTQNIKAKFTVGMT 235

Query: 424 LVFRVLGVKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITHGWITKIEKHGCFVRFY 481
           +  RVL +    + +T K+ LV+S   LA L      +  +   G++ +++  G  V FY
Sbjct: 236 VNARVLNITDGNVILTLKQGLVESDKCLATLEQLIPCSQYV---GFVVQVKVAGALVAFY 292

Query: 482 NGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 538
             ++G+     L         +P   + +GQVV   ++      +   L   +   +   
Sbjct: 293 GDIKGWISNRVLNHASSGHYLDPREYFFIGQVVTVWVL----GIKNDKLHLSLNAPKGQN 348

Query: 539 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 594
              +K+G   +G V  +  + + V  ++    K TIP  HL+ +L    V+ ++++
Sbjct: 349 KHKIKIGQTDNGSVTKIHSDGLDVK-LSNYEVKATIPLAHLSTNLSLCPVLLTILQ 403


>gi|91082491|ref|XP_972709.1| PREDICTED: similar to programmed cell death protein 11 (pre-rrna
            processing protein rrp5) [Tribolium castaneum]
          Length = 953

 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 178/304 (58%), Gaps = 17/304 (5%)

Query: 1518 HAKKKEK---EEREQEIRAAEERL--LEKD------APRTPDEFERLVRSSPNSSFVWIK 1566
             +KKK+K    ER +  +  EER+  +E +       P++ ++F+RL+ ++PNSS +W++
Sbjct: 649  QSKKKKKLTPAERAEIAKKEEERISKIENELADSTIPPQSAEQFDRLLLANPNSSKLWLQ 708

Query: 1567 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1626
            YM+  ++  +++KAR++ +RAL TIN+    EK N+W+A  NLEN YG   +E+  K F+
Sbjct: 709  YMSMHIATTELDKARAVGKRALDTINMTLVKEKYNVWIALLNLENMYGT--KESFDKTFE 766

Query: 1627 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR--RVQRLLKQQQ 1684
             A++  D  +++L ++ +   + + +  +E + K+  K K + K+WL   R+   L Q +
Sbjct: 767  EAVRCNDSLEIYLNVIQMLATSGKLQEMEEKIKKVRAKEKQNTKMWLEISRIYYSLGQFK 826

Query: 1685 EGVQAVVQRALLS-LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1743
            E  + V + AL S L + +    I +  I+EF+ G  D+  + FE IL  YP + ++W I
Sbjct: 827  EA-RNVKESALKSILDKKRQFDLIVKFGIMEFQLGELDQAVANFETILDTYPSKVNIWII 885

Query: 1744 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803
            Y+DQ +R  + +  R   ERAIS     K MK LF+K++ +E+  G  E +E +K KA E
Sbjct: 886  YVDQLVRKKNFEAARKTLERAISQKFAMKTMKVLFQKFISFEEQYGSPESVEDIKSKAKE 945

Query: 1804 YVES 1807
            Y+ S
Sbjct: 946  YLAS 949



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 111/496 (22%), Positives = 205/496 (41%), Gaps = 60/496 (12%)

Query: 135 FLPRNNLAENSGIDVKPGLLLQGVVRSIDR----------TRKVVYLSSDPDTVSKCVTK 184
           +  +  L +  G  V+ G+++   +R              T   V +++  D  +  +TK
Sbjct: 22  YQEKKKLLKTCGKRVQDGMVVLACIRRFSNLSVQVEFPGLTYGAVAINNISDVFTASITK 81

Query: 185 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND-YN 243
           +LK  + DL++P             +G+           VD      TF  +  K +   
Sbjct: 82  ELKANN-DLILP-------------HGIKGQLAENCYAYVD-----ETFTFSRIKKERIK 122

Query: 244 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 303
           + K + A +LFV+P ++   L+L       + P   + +G +     +  V +GL L L+
Sbjct: 123 EGKSIPAYVLFVEPVTKVTYLSLRGL---EKLPEPELTIGQVCSAQILYNVPKGLYLQLN 179

Query: 304 IPSTPVSTPAYV--TISDVAEEE-VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA 360
              T   +   +  T+   A+ + V  + KKY  GS  + R+L + H++ L     +   
Sbjct: 180 QTETGFISNKRLLKTLPKGADVDIVSAIRKKYPNGSRHQCRVLDYNHMQQLYICTFEKQV 239

Query: 361 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK-KFK 419
            +  +FT SD+K G  V  +V  V + G I +  G V+   P   +S  +  +  K KF 
Sbjct: 240 IKEKIFTVSDLKIGQAVTAQVTKVVTNGLITKV-GHVQGFVPNLQLSNAKFTQNIKAKFT 298

Query: 420 VGAELVFRVLGVKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITHGWITKIEKHGCF 477
           VG  +  RVL +    + +T K+ LV+S   LA L      +  +   G++ +++  G  
Sbjct: 299 VGMTVNARVLNITDGNVILTLKQGLVESDKCLATLEQLIPCSQYV---GFVVQVKVAGAL 355

Query: 478 VRFYNGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
           V FY  ++G+     L         +P   + +GQVV   ++      +   L   +   
Sbjct: 356 VAFYGDIKGWISNRVLNHASSGHYLDPREYFFIGQVVTVWVL----GIKNDKLHLSLNAP 411

Query: 535 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 594
           +      +K+G   +G V  +  + + V  ++    K TIP  HL+ +L    V+ +  K
Sbjct: 412 KGQNKHKIKIGQTDNGSVTKIHSDGLDVK-LSNYEVKATIPLAHLSTNLSLCPVLLTNAK 470

Query: 595 PG---------YEFDQ 601
            G         Y FD+
Sbjct: 471 IGSVVEGVVLDYNFDE 486


>gi|294939872|ref|XP_002782591.1| programmed cell death protein, putative [Perkinsus marinus ATCC
            50983]
 gi|239894389|gb|EER14386.1| programmed cell death protein, putative [Perkinsus marinus ATCC
            50983]
          Length = 235

 Score =  169 bits (428), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 134/221 (60%), Gaps = 8/221 (3%)

Query: 1589 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1648
            Q +  R+E ++LN+W+AY NLE       E+    +F+RA  Y D KKVH+A+  ++ R 
Sbjct: 1    QRLGFRDEQDRLNLWIAYLNLEAHVRGRVED----LFKRAASYNDSKKVHMAMCDVWARA 56

Query: 1649 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKF 1706
                LA E   +  +KF HS KVW++ ++ L    +  E  Q  + RAL    R KH   
Sbjct: 57   GAEDLALEAYKRTAEKFGHSKKVWMKYLEFLYSTGKLSEARQNCLPRALRLTDRRKHSLI 116

Query: 1707 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG--DVDLIRGLFERA 1764
             ++ A LE+K G  +RG+++FE +L+  PKR D+WS+YLD+ I     D D +R +F+RA
Sbjct: 117  ATRAAKLEYKYGTVERGKTIFESLLASQPKRLDIWSVYLDEHINANKEDADQVRSVFDRA 176

Query: 1765 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
            ++L L P KMKF FK+++ +E+S G+ + ++ VK KA EYV
Sbjct: 177  VTLKLKPAKMKFFFKRWVNFEQSYGDVDHLDLVKDKAREYV 217


>gi|401885552|gb|EJT49659.1| rRNA processing-related protein [Trichosporon asahii var. asahii
           CBS 2479]
          Length = 1478

 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 165/633 (26%), Positives = 287/633 (45%), Gaps = 58/633 (9%)

Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG------FLPRNNLAENSGIDVKPGLLLQ 156
           + V++G  +   V   ED GY +  GL + TG      F+P   + +N+G  + PG L+ 
Sbjct: 241 QDVEKGYRIVGEVLGAEDKGYRVGLGLSADTGLAGVEGFIPIEEVEKNAGGALIPGQLIP 300

Query: 157 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 216
            VV  +    +VV L+ DP T+      ++  I    L+PG + S  V +++ +G+ +  
Sbjct: 301 TVVSEVKAGGRVVKLTLDPQTLIHSSLTEVSNIGS--LLPGQLASCLVTAVVPSGLNVKI 358

Query: 217 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYLLHNR 274
             ++ GT+DI HL       + ++ YN  KK+ ARIL+  V  + R   L+  P++ +  
Sbjct: 359 CGFYDGTIDIAHL--GLGEDDIEDRYNIGKKIKARILYDTVASSERRFALSALPHIFNLA 416

Query: 275 APPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 325
           +P +          + VG      KV+RV    G    +P+   ST              
Sbjct: 417 SPVAADGETPLEIAIPVGKTLPSVKVIRVIPDWG---RVPTLSNST-------------- 459

Query: 326 RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 385
                ++K G+  R R++G   L+G+     +      +     ++  G V+KG V  + 
Sbjct: 460 ----GQFKVGTYHRARVIGHSPLDGVMLLSFEEKVLNQVFMQVGELTIGQVLKGTVRKLS 515

Query: 386 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 443
             G  V   G V  +    H ++  +  P K+FKVGA +  RV  ++    R+ +T KK+
Sbjct: 516 DKGLFVNVQGNVDGVVWPLHYADIRLKHPEKRFKVGASVKARVFAIEPARNRVVLTLKKS 575

Query: 444 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 503
           LV+S L +  S+A+ T   IT   ++KI   GC V  + G++ F P+SE   +     + 
Sbjct: 576 LVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLND 635

Query: 504 MYHVGQVVKCRIMSSIPASRRINLSFMMK-PTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 562
           ++ VG+ V  RI      S+++  S     PT V+ + L ++GS VSG+V  +    VVV
Sbjct: 636 VFFVGKAVNVRITDVDEHSQKLVASVRQALPTAVAAEKL-EVGSDVSGIVAQIHAEQVVV 694

Query: 563 YVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NESSNLLL----SA 616
            +I    +   +   +L++H       ++  +K G + + L+V+  N +S L++     A
Sbjct: 695 TLIPSQLT-ALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVANKRA 753

Query: 617 KYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 676
           K  +         +   I    V+ G V +    G  VR   ++ G    + A D    D
Sbjct: 754 KKGIPTGISTPARNFDAIAVGDVLPGRVISKTPQGAMVRLGKKIRGRVAPTDASD----D 809

Query: 677 LSKT-YYVGQSVRSNILDVNSETGRITLSLKQS 708
           LS     V   V   +L V++E+  I LS ++S
Sbjct: 810 LSAPGLKVDDDVLCCVLKVDAESRAIDLSTRKS 842



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 147/560 (26%), Positives = 246/560 (43%), Gaps = 90/560 (16%)

Query: 884  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-AISETETSSSKRAKKKSSYDVGSLV 942
            K P+K+F  G SV A V A+  +    R++L LK ++ E++               GS  
Sbjct: 542  KHPEKRFKVGASVKARVFAIEPARN--RVVLTLKKSLVESDLPVP-----------GSFA 588

Query: 943  QAEITEIKPLELRLKFGIG-----FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
                 EI P  +      G     F G       ++  +N V NL   F +G+ V  RI 
Sbjct: 589  DVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRIT 648

Query: 998  AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1057
                  D+ +     ++     L  +    KL        +G  V+G V ++  E  ++T
Sbjct: 649  ------DVDEHSQKLVASVRQALPTAVAAEKL-------EVGSDVSGIVAQIHAEQVVVT 695

Query: 1058 -ISRHLKAQLFILD-SAYEPSELQEFQRRFHIGK-----------AVTGHVLSINKEKKL 1104
             I   L A L + + S +    + E ++   +G+           A +G ++  NK  K 
Sbjct: 696  LIPSQLTALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVANKRAK- 754

Query: 1105 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1164
                 +    GIS    +         I  GD++ GR+  I     G +V++G  + GRV
Sbjct: 755  -----KGIPTGISTPARNFDA------IAVGDVLPGRV--ISKTPQGAMVRLGKKIRGRV 801

Query: 1165 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1224
              T+      SD LS           G      V C VL++    R    ++LS R S  
Sbjct: 802  APTD-----ASDDLSA---------PGLKVDDDVLCCVLKVDAESRA---IDLSTRKS-- 842

Query: 1225 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1284
                         VD     +    DL     V+G VKNV   G F+ L R + A+V++ 
Sbjct: 843  ---RVQPYSAPAIVDA---EINSTADLKAGQSVRGIVKNVAPNGLFVALGRSVTARVMIK 896

Query: 1285 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1344
             L D +V+  +  F +G +V+G++LSV     RVE+TL+T   +  +++++  L++   G
Sbjct: 897  ELFDDFVKDWKARFAVGDVVSGKILSVG--DDRVEMTLRTKPRKAGAETKL-TLADFKEG 953

Query: 1345 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKILK 1401
              V   +KRVES+GLF+ I+ +++ GLCH SE+S++   ++      +R  + V+  I  
Sbjct: 954  QKVEATVKRVESFGLFLRIDGSDVSGLCHRSEISDNKKQDVSQALKGFREKDHVRAVITS 1013

Query: 1402 VDKEKRRISLGMKSSYFKND 1421
            +DKEK +I+  +K+S+F +D
Sbjct: 1014 IDKEKGKINFSIKASHFSDD 1033



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 87/166 (52%), Gaps = 8/166 (4%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            ++ +L+   +++G V+ ++ KG F+ +   +D  V   + +D  ++ PEK F +G  V  
Sbjct: 497  QVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLHYADIRLKHPEKRFKVGASVKA 556

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEI---NNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            RV ++EP   RV +TLK    ++  +S++    + +++  G+I    + ++   G  + +
Sbjct: 557  RVFAIEPARNRVVLTLK----KSLVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVDL 612

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
                L      SE S ++V N+  ++  G+ V V+I  VD+  +++
Sbjct: 613  FG-GLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDVDEHSQKL 657



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 104/227 (45%), Gaps = 19/227 (8%)

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-----TRVSEDDLVKLGSLVSGVVDVVT 556
           +  + VG   + R++   P    + LSF  K       +V E   + +G ++ G V  ++
Sbjct: 459 TGQFKVGTYHRARVIGHSPLDGVMLLSFEEKVLNQVFMQVGE---LTIGQVLKGTVRKLS 515

Query: 557 PNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNL 612
              + V V  +G   G +   H AD    H E    + + +K      ++  ++   + +
Sbjct: 516 DKGLFVNV--QGNVDGVVWPLHYADIRLKHPEKRFKVGASVKA-----RVFAIEPARNRV 568

Query: 613 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 672
           +L+ K SL+ S   +P   + +    +    V  I++ GC V   G L  F P+S+A   
Sbjct: 569 VLTLKKSLVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTN 628

Query: 673 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
             A+L+  ++VG++V   I DV+  + ++  S++Q+  ++  A  ++
Sbjct: 629 YVANLNDVFFVGKAVNVRITDVDEHSQKLVASVRQALPTAVAAEKLE 675



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 179/431 (41%), Gaps = 59/431 (13%)

Query: 5   NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHV 64
           +++AG     VV+++ +K  ++ L GGLR     ++A    + N         L  +F V
Sbjct: 589 DVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVAN---------LNDVFFV 639

Query: 65  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 124
           G+ V+  +  +D+  +     K+  S+R + L   ++ E ++ G  ++  V  I     +
Sbjct: 640 GKAVNVRITDVDEHSQ-----KLVASVRQA-LPTAVAAEKLEVGSDVSGIVAQIHAEQVV 693

Query: 125 LHFGLPSFTGFLPRNNLAENSGIDV-------KPGLLLQG-VVRSIDRTRKVVYLSSD-- 174
           +       T  L   NL+ + G+ V       K G  L+  VV S + T  ++ +++   
Sbjct: 694 VTLIPSQLTALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVANKRA 753

Query: 175 ----PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
               P  +S    ++   I++  ++PG ++S   Q     G M+       G V      
Sbjct: 754 KKGIPTGIS-TPARNFDAIAVGDVLPGRVISKTPQ-----GAMVRLGKKIRGRVAPTDAS 807

Query: 231 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV-----KVGDI 285
           +       K D +    V   +L VD  SRA+ L+     +   + P+ V        D+
Sbjct: 808 DDLSAPGLKVDDD----VLCCVLKVDAESRAIDLSTRKSRVQPYSAPAIVDAEINSTADL 863

Query: 286 YDQSKVVRVDRGL---GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 342
                V  + + +   GL + +     S  A V I ++ ++ V+  + ++  G  V  +I
Sbjct: 864 KAGQSVRGIVKNVAPNGLFVALGR---SVTARVMIKELFDDFVKDWKARFAVGDVVSGKI 920

Query: 343 L--GFRHLE-GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG-VK 398
           L  G   +E  L T   KA A   L  T +D K G  V+  V  V+SFG  ++  G  V 
Sbjct: 921 LSVGDDRVEMTLRTKPRKAGAETKL--TLADFKEGQKVEATVKRVESFGLFLRIDGSDVS 978

Query: 399 ALCPLPHMSEF 409
            LC   H SE 
Sbjct: 979 GLC---HRSEI 986


>gi|221060604|ref|XP_002260947.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
            knowlesi strain H]
 gi|193811021|emb|CAQ42919.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
            knowlesi strain H]
          Length = 459

 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 155/280 (55%), Gaps = 22/280 (7%)

Query: 1546 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1605
             P ++ERL+ S  N+S +W+ Y+A+ L    +E+AR  AERAL+TI+I +  EK NI+  
Sbjct: 179  NPSDYERLLASEKNNSAIWVSYIAYHLQKGSLEEARKTAERALKTIDIHKVEEKKNIFFC 238

Query: 1606 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1665
            Y N+E  YG+   E    VF+RAL  C+ KKV++  + + +  ++     +L  + IKKF
Sbjct: 239  YINMECTYGDKLRE----VFKRALLCCNEKKVYMHTMNVLKVNKKYNQLKQLSEEAIKKF 294

Query: 1666 KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1723
             +S K+W   ++ +     +   A  ++ ++L  LP+ KH++ +   A  E+K    +RG
Sbjct: 295  HYSKKIWSHYLEIIHSTFNDEAYAHEILLKSLHCLPKRKHLRMVINAARFEYKYANKERG 354

Query: 1724 RSMFEGILSEYPKRTDLWSIYLDQEI----------------RLGDVDLIRGLFERAISL 1767
            +S FE ++ EYPKR+D+W  YLD  I                 L  +  +R +FER  S 
Sbjct: 355  KSYFEKLIQEYPKRSDVWFTYLDIHINSLTKGETKGEKKKKLNLNQLQFVRNIFERFSSC 414

Query: 1768 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
                + MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 415  KFKTRVMKMIFTKWLLFEKNHGNVTSQKMVQKKAYDYVES 454


>gi|68076587|ref|XP_680213.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56501107|emb|CAH98739.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 432

 Score =  168 bits (425), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 96/286 (33%), Positives = 162/286 (56%), Gaps = 29/286 (10%)

Query: 1547 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY 1606
            P ++E+L+ S  N S +WI Y+ + L   ++++AR+IAERAL+TI+I    EKLNI++ Y
Sbjct: 146  PYDYEKLLVSEKNKSTIWISYIVYYLEKGNIQEARNIAERALKTIDIHLIEEKLNIYLCY 205

Query: 1607 FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1666
             N+E  YG+   E    +F+RAL   + K ++L  + + +  ++     EL  + IKKFK
Sbjct: 206  INMECAYGDNLNE----IFKRALLVNNEKSIYLHTMNILKMNKKLNELKELCEEGIKKFK 261

Query: 1667 HSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1724
            +S K+W R ++ L      +E    ++ ++L +LP+ KH+  I   A  E+K    +RG+
Sbjct: 262  YSKKIWTRYLELLHNTLNDEEYAHNILLKSLHALPKRKHLNIIINAARFEYKYSNIERGK 321

Query: 1725 SMFEGILSEYPKRTDLWSIYLD-----------------------QEIRLGDVDLIRGLF 1761
            + FE ++ EYPKR+D+W  YLD                       +++ L ++  IR +F
Sbjct: 322  NYFEKLIQEYPKRSDIWFTYLDIHINSLTKAKKNENDDENQKKKIKKLTLNELQFIRNIF 381

Query: 1762 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            ER +S+    + MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 382  ERFLSIKFKTRVMKMIFTKWLLFEKNHGSVNTQKMVQKKAYDYVES 427


>gi|385305108|gb|EIF49102.1| part of small ribosomal subunit processosome (contains u3 snorna)
           [Dekkera bruxellensis AWRI1499]
          Length = 1300

 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 178/692 (25%), Positives = 308/692 (44%), Gaps = 65/692 (9%)

Query: 58  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
           L T F VGQ +   V++   +  + GK++  LS     + KGL  +  +    + A ++S
Sbjct: 198 LSTRFSVGQYLRAYVVE---NTSDTGKKRFELSXEPENVNKGLKKDDFEPNTYVQASIRS 254

Query: 118 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP----GLLLQGVVRSIDRTRKVVYLSS 173
           +EDHG IL  G+    GFL + + A   GID+       + L  V +   RT ++   S+
Sbjct: 255 VEDHGAILDLGMHDMNGFLSKKD-ATKGGIDLASLEVGSVHLLTVKKRSGRTLQLTIPSN 313

Query: 174 D------PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 227
           +      P +VS          +ID ++PG +V   +  ++  G+++       G++ + 
Sbjct: 314 NVEKEQIPSSVS----------TIDAILPGSLVDCTITDVVSZGLIVKAFGLANGSISLT 363

Query: 228 HLQNTFPTTNWKNDYNQHKKVNARIL--FVDPTSRAVGLTLNPYLLH----------NRA 275
           H+   + ++  ++ +   + V AR+   ++    R V L+L P++++            A
Sbjct: 364 HI-GKYNSSELEDTFKVGESVRARVYASYIQDGLRNVQLSLLPHIVNLKKLAYDPKDESA 422

Query: 276 PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPS-TPVSTPAYVTISDVAEEEVRKLEKKYKE 334
           P     +G I+D+  +   D    L  D+ S T V       +S  A+     L+  +K 
Sbjct: 423 PLVAFPIGHIFDEVTIQGCDSNY-LFADLGSRTAVGQIHKSRVSKGAD-----LDTDFKT 476

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA-VDSFGAIVQF 393
           GS  R R+LG+   + +    +     +       D+  G  VK KV   V   G  V  
Sbjct: 477 GSTHRARVLGYSLFDNVYILTMDEEKIDQKYLRMEDIPAGQYVKCKVDKIVPGKGIQVNL 536

Query: 394 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKR--ITVTHKKTLVKSKL 449
               +   P  H+S+  ++ P +KFK+G  +  RVL V   S R  I +T K+TLV +  
Sbjct: 537 EDTFEGFVPDVHISDVHLLYPQRKFKIGRXVKGRVLRVSXNSTRPTIYITLKRTLVSADD 596

Query: 450 A-ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 508
           + I SS+ EAT        + +    GC V F+  ++GF P SE+      +P     +G
Sbjct: 597 SEIXSSFDEATVGKXALATVERFYPGGCLVSFFGFLRGFLPNSEISETFVSKPXDFLKLG 656

Query: 509 QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV------VV 562
           Q V+ RI++      R+ +S  +  T +SE     +  +V G   +V  N V      ++
Sbjct: 657 QTVRVRIINVEKEKNRMKVSMRVAET-LSEKQTEAMEXIVPGKT-IVECNIVEKNRNSLI 714

Query: 563 YVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYS 619
             +A    +G IP   L+D  + E  +++K     G     L++    +   + L+ K S
Sbjct: 715 AELADSNLRGVIPCGQLSDKTYDECRSLLKKT-XVGSXVKALVISKVPNGRFVDLTLKPS 773

Query: 620 LINSAQQ--LPSDASHIHPNSV-VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 676
           L+  A    LPSD S I  +S  +HG+V N+   G FV F  +LTG              
Sbjct: 774 LMKDAANGVLPSDYSDITMSSKELHGFVKNVTRYGVFVSFANQLTGLILPRYLNSNDVEY 833

Query: 677 LSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           L K ++V QS+   ++ ++    R  LS+K+S
Sbjct: 834 LEKKFFVNQSISCRVVKMDDANXRFLLSMKES 865



 Score =  114 bits (285), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 169/755 (22%), Positives = 318/755 (42%), Gaps = 120/755 (15%)

Query: 651  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710
            GC V F G L GF P S+  +   +       +GQ+VR  I++V  E  R+ +S++    
Sbjct: 623  GCLVSFFGFLRGFLPNSEISETFVSKPXDFLKLGQTVRVRIINVEKEKNRMKVSMR---- 678

Query: 711  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 770
                             +A   S K   +    V G    +++E  + E N   ++    
Sbjct: 679  -----------------VAETLSEKQTEAMEXIVPG---KTIVECNIVEKNRNSLIAELA 718

Query: 771  EHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDR 820
            + S++ G I   QL+  T +           GS ++A ++      R VDL+LK   +  
Sbjct: 719  D-SNLRGVIPCGQLSDKTYDECRSLLKKTXVGSXVKALVISKVPNGRFVDLTLKPSLM-- 775

Query: 821  FREANSNRQAQKKKRKREASKDLG--VHQTVNAIVEIVKENYLV-LSLPEYNHSIGYASV 877
             ++A +            +SK+L   V       V +   N L  L LP Y +S      
Sbjct: 776  -KDAANGVLPSDYSDITMSSKELHGFVKNVTRYGVFVSFANQLTGLILPRYLNS------ 828

Query: 878  SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-----AISETETSSSKRAKK 932
               N  ++ +K+F   QS+   V+ +  ++   R LL +K      I        K  KK
Sbjct: 829  ---NDVEYLEKKFFVNQSISCRVVKMDDANX--RFLLSMKESKGGVIEPXNNPVDKHIKK 883

Query: 933  KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQ 990
             + Y  G + +A +  +K   L ++      GRI +T + D   ++ +  N  S FK G+
Sbjct: 884  LNEYIPGRITRAVVKSVKLAYLIVRLADNQLGRIDVTNLFDKFEDIKDPKNPTSQFKEGE 943

Query: 991  TVTARIIAKSNKPDMKKSFLWE-----------LSIKPSMLTVSEIGSKLLFEEC-DVSI 1038
             +  ++I   +  +   ++L E           LS +   +   +   +L      D  I
Sbjct: 944  ILKVKVIGYFDSRN--HTYLTENHRRFDESVIGLSARKVDIDTGKNTERLNLPTIEDAKI 1001

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
            G  + G+V         ++++   K ++  ++ + + S L + ++   IG A+   ++ +
Sbjct: 1002 GDEILGFVNNFSIGAVWISMAXKYKGRVSFMNLSSDISVLSDVEKVHPIGSALKLKIVDV 1061

Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
             K+   + L       G +D    I +      +H GD V  R+ K+      +++++G 
Sbjct: 1062 XKQYSTVEL------SGRADYITSIDS------VHVGDRVPARVVKVYESY--VLLELGD 1107

Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
            H+    + TE         L  YD+ + + +  Y +      +VLE+ +  +    +E+S
Sbjct: 1108 HVDAAAYITE--------ALDDYDQ-KLEEV--YAQNDVXAARVLEVDKPSK---RIEVS 1153

Query: 1219 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
            L+S           D + D     K ++  +DL    IV+G+V  + + G  + LS+ + 
Sbjct: 1154 LQS-----------DTAKD-----KSIDSADDLKVGDIVRGFVNRINNGGLLVXLSKDVY 1197

Query: 1279 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1338
            A V ++NLSD Y++  +  F + + V G+V+  + L K + ++LK SD  +     +   
Sbjct: 1198 AFVKVANLSDSYLKDWKPFFKLYQPVTGKVVRADGLGK-IMLSLKESDI-SGKAHLLKRF 1255

Query: 1339 SNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLC 1372
             +L VG+I  G +K V  YG+F+ ++   NL G  
Sbjct: 1256 EDLKVGEIYDGVVKSVVEYGVFVKLDGCLNLTGFV 1290



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 103/482 (21%), Positives = 220/482 (45%), Gaps = 47/482 (9%)

Query: 962  FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1021
              G I   +++D   +   +L     +G  V A +I+K     +      +L++KPS++ 
Sbjct: 722  LRGVIPCGQLSDKTYDECRSLLKKTXVGSXVKALVISK-----VPNGRFVDLTLKPSLMK 776

Query: 1022 VSEIGSKLLFEECDVSIGQR-VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1080
             +  G  L  +  D+++  + + G+V  V      ++ +  L     IL      ++++ 
Sbjct: 777  DAANGV-LPSDYSDITMSSKELHGFVKNVTRYGVFVSFANQLTG--LILPRYLNSNDVEY 833

Query: 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE-GDIVG 1139
             +++F + ++++  V+ ++       L ++  + G+    ++  N+ +   I +  + + 
Sbjct: 834  LEKKFFVNQSISCRVVKMDDANXRFLLSMKESKGGV----IEPXNNPVDKHIKKLNEYIP 889

Query: 1140 GRISKILSG---VGGLVVQIGPHLYGRVHFTEL--KNICVSDPLSGYDEGQFDPLSGYDE 1194
            GRI++ +     +  L+V++  +  GR+  T L  K   + DP         +P S + E
Sbjct: 890  GRITRAVVKSVKLAYLIVRLADNQLGRIDVTNLFDKFEDIKDPK--------NPTSQFKE 941

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLR--SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
            G+ +K KV+    +   T+  E   R   S+ G+S+    D+ T  +T   +L  IED  
Sbjct: 942  GEILKVKVIGYFDSRNHTYLTENHRRFDESVIGLSA-RKVDIDTGKNTERLNLPTIEDAK 1000

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLS 1310
                + G+V N +    +I ++ K   +V   NLS     +   EK  PIG  +  +++ 
Sbjct: 1001 IGDEILGFVNNFSIGAVWISMAXKYKGRVSFMNLSSDISVLSDVEKVHPIGSALKLKIVD 1060

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESYGLFITIENTNLV 1369
            V      VE++             I ++ ++HVGD V  ++ +V ESY L    ++ +  
Sbjct: 1061 VXKQYSTVELS--------GRADYITSIDSVHVGDRVPARVVKVYESYVLLELGDHVD-- 1110

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK----NDADNL 1425
               +++E  +D+   +E +Y   +    ++L+VDK  +RI + ++S   K    + AD+L
Sbjct: 1111 AAAYITEALDDYDQKLEEVYAQNDVXAARVLEVDKPSKRIEVSLQSDTAKDKSIDSADDL 1170

Query: 1426 QM 1427
            ++
Sbjct: 1171 KV 1172



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 1247 KIEDLSPNMIVQGYV-KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            ++ED+     V+  V K V  KG  + L    +  V   ++SD ++  P+++F IG+ V 
Sbjct: 509  RMEDIPAGQYVKCKVDKIVPGKGIQVNLEDTFEGFVPDVHISDVHLLYPQRKFKIGRXVK 568

Query: 1306 GRVLSVEPLSKR--VEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFIT 1362
            GRVL V   S R  + +TLK +   +A  SEI ++     VG   +  ++R    G  ++
Sbjct: 569  GRVLRVSXNSTRPTIYITLKRT-LVSADDSEIXSSFDEATVGKXALATVERFYPGGCLVS 627

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
                 L G    SE+SE  V       + G+ V+V+I+ V+KEK R+ + M+
Sbjct: 628  FFGF-LRGFLPNSEISETFVSKPXDFLKLGQTVRVRIINVEKEKNRMKVSMR 678



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 192/436 (44%), Gaps = 67/436 (15%)

Query: 986  FKIGQTVTARII---AKSNKPDMKKSFLWELSIKPSMLTV--SEIGSKLLFEECDVSIGQ 1040
            FKIG+ V  R++     S +P +       +++K ++++   SEI S   F+E   ++G+
Sbjct: 561  FKIGRXVKGRVLRVSXNSTRPTIY------ITLKRTLVSADDSEIXSS--FDEA--TVGK 610

Query: 1041 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1100
                 V +      L++    L+   F+ +S    + + +      +G+ V   ++++ K
Sbjct: 611  XALATVERFYPGGCLVSFFGFLRG--FLPNSEISETFVSKPXDFLKLGQTVRVRIINVEK 668

Query: 1101 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG-PH 1159
            EK  +++ +R     +++   +   + M+  +    IV   I  +      L+ ++   +
Sbjct: 669  EKNRMKVSMR-----VAETLSEKQTEAMEXIVPGKTIVECNI--VEKNRNSLIAELADSN 721

Query: 1160 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1219
            L G +   +L +         YDE +   L     G  VK   L IS+   G F V+L+L
Sbjct: 722  LRGVIPCGQLSD-------KTYDECR-SLLKKTXVGSXVKA--LVISKVPNGRF-VDLTL 770

Query: 1220 RSSL--DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
            + SL  D  +    SD S D+    K L             G+VKNVT  G F+  + +L
Sbjct: 771  KPSLMKDAANGVLPSDYS-DITMSSKEL------------HGFVKNVTRYGVFVSFANQL 817

Query: 1278 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1337
               +L   L+   VE  EK+F + + ++ RV+ ++  + R  +++K  +S+       NN
Sbjct: 818  TGLILPRYLNSNDVEYLEKKFFVNQSISCRVVKMDDANXRFLLSMK--ESKGGVIEPXNN 875

Query: 1338 LSNLHV--------GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----N 1384
              + H+        G I    +K V+   L + + + N +G   V+ L +   D     N
Sbjct: 876  PVDKHIKKLNEYIPGRITRAVVKSVKLAYLIVRLAD-NQLGRIDVTNLFDKFEDIKDPKN 934

Query: 1385 IETIYRAGEKVKVKIL 1400
              + ++ GE +KVK++
Sbjct: 935  PTSQFKEGEILKVKVI 950


>gi|399216606|emb|CCF73293.1| unnamed protein product [Babesia microti strain RI]
          Length = 953

 Score =  167 bits (423), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 177/326 (54%), Gaps = 32/326 (9%)

Query: 1507 EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE---KDAPRTPDEFERLVRSSPNSSFV 1563
            + KT+  K  R   KK+   RE+EIR  E + +    K+ P +P +FERL+  +   +  
Sbjct: 633  DTKTVISKTKR---KKKPRAREKEIRKIENKYVNGSWKENPESPWDFERLLVENNKLAET 689

Query: 1564 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623
            WI+YMA+ L+ ++++ AR +AER ++ I I +   ++N+W+AY N+E +YG+  ++    
Sbjct: 690  WIRYMAYHLNNSNLKLAREVAERGIKAITINDLQGRMNLWIAYLNMEVKYGDNAKD---- 745

Query: 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1682
            VF+R++   DP  +++ +  +Y +  + +LA E   + I KF    ++W+  ++   K+ 
Sbjct: 746  VFKRSINCNDPATMYIKMFRIYSKCGKAELAMETANEGISKFPDLNELWIDLLKFYYKEG 805

Query: 1683 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR-------GRSMFEGILSEYP 1735
            + +  + + ++A     + +     SQ A+LE+K G  +R       G+ MFE +L E  
Sbjct: 806  KADCAKELHKKASQRCSKREFCYITSQIALLEYKYGDPNRYRRDNISGQDMFEKLLDENA 865

Query: 1736 KRTDLWSIYLDQEI--------------RLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1781
            KR D W  Y+D  I              R   ++ +R +F+RA  L L PKKMK +F K+
Sbjct: 866  KRMDFWQQYIDAHIKYKLKNFDNMEKSKRTESMEQLRNIFKRATYLGLKPKKMKIIFAKW 925

Query: 1782 LEYEKSVGEEERIEYVKQKAMEYVES 1807
            L +E   G+ +    V+++A +YVES
Sbjct: 926  LSFETDYGDAKSQATVRERARQYVES 951


>gi|302823614|ref|XP_002993458.1| hypothetical protein SELMODRAFT_431529 [Selaginella moellendorffii]
 gi|300138732|gb|EFJ05489.1| hypothetical protein SELMODRAFT_431529 [Selaginella moellendorffii]
          Length = 743

 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 182/353 (51%), Gaps = 85/353 (24%)

Query: 1219 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
            L+S+L+      +     D+  PG+    +E       + G+VKNVT KGCF++L+  L+
Sbjct: 468  LKSALNQFIYRGTVRKVLDLKRPGRGKMGLE-------LSGFVKNVTEKGCFVVLAPSLE 520

Query: 1279 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1338
            A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS  +E++L  + S+ +S       
Sbjct: 521  ARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSGHIEMSLAATTSQDSS-----GW 575

Query: 1339 SNLHVGDIVIGQIKRVESYGLFITIENTNLV------GLCHVSELSEDHVDNIETIYRAG 1392
                 G+IV G+I  +E++G+FI++  +N+        LCH SE+S D + ++ T+Y+ G
Sbjct: 576  KKFGAGEIVSGRIHNIEAFGIFISLAESNVFLVCAPGCLCHFSEVSYDFIQDLSTLYKVG 635

Query: 1393 EKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENS 1452
            + V+VKILKVD E +RISLGMK+SY   + D +    E   +EAI E  S N + L++N 
Sbjct: 636  QWVQVKILKVDAETKRISLGMKASYLTPE-DGI----EPMEEEAINEEPS-NTNVLMDND 689

Query: 1453 SVAVQD-MDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTI 1511
                +D +D+ S+    L +                                        
Sbjct: 690  EREEEDYLDLASKRFPQLCM---------------------------------------- 709

Query: 1512 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFV 1563
                   A  KEK             LL+KD  P T D+FERLV +SPNSS++
Sbjct: 710  ------EAAAKEK-------------LLQKDQPPETKDDFERLVAASPNSSYM 743


>gi|156102424|ref|XP_001616905.1| hypothetical protein [Plasmodium vivax Sal-1]
 gi|148805779|gb|EDL47178.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 458

 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 157/279 (56%), Gaps = 21/279 (7%)

Query: 1546 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1605
            +P ++ERL+ S  N+S +W+ Y+A+ L    +E+AR  AERAL+TI+I +  EK NI+  
Sbjct: 179  SPSDYERLLASEKNNSAIWVSYIAYHLEKGSLEEARKTAERALKTIDIHKVEEKRNIFFC 238

Query: 1606 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1665
            Y N+E  YG+   E    +F+RAL  C+ KKV++  + + +  ++     +L  + IKKF
Sbjct: 239  YINMECTYGDKLRE----IFKRALLCCNEKKVYIHTMNVLKVNKKYNQLKQLSEEAIKKF 294

Query: 1666 KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1723
             +S K+W   ++ +    ++   A  ++ ++L  L + KH++ +   A  E+K    +RG
Sbjct: 295  HYSKKIWSHYLEIIHSTFKDEAYAHEILLKSLHCLAKRKHLRMVINAARFEYKYANKERG 354

Query: 1724 RSMFEGILSEYPKRTDLWSIYLDQEI---------------RLGDVDLIRGLFERAISLS 1768
            +S FE ++ EYPKR+D+W  YLD  I                L  ++ +R +FER  S  
Sbjct: 355  KSYFEKLIQEYPKRSDVWFTYLDIHINSLTKSEIKGKKKKLNLNQLEFVRNIFERFSSCK 414

Query: 1769 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
               + MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 415  FKTRVMKMIFTKWLLFEKNHGSVASQKMVQKKAYDYVES 453


>gi|440295400|gb|ELP88313.1| programmed cell death protein, putative [Entamoeba invadens IP1]
          Length = 1782

 Score =  164 bits (415), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 231/495 (46%), Gaps = 46/495 (9%)

Query: 1341 LHVGDIVIGQIKR-----VESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAG 1392
            +   D V G+  R     +   GLF    N+NL   CH S++          +   ++ G
Sbjct: 1305 VRASDAVCGKFARAVITAIYKSGLFFRFHNSNLRAFCHCSQIETGTFFTFSVLNSRFKVG 1364

Query: 1393 EKVKVKILKVDKE--KRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLE 1450
            +   VKI++ +    K  I + +K+     D  ++ +  E E D     +  +++     
Sbjct: 1365 DSHIVKIIQNNTRNGKPMIRVSIKAE----DIADVDIPDESEVDY----IDMWHKEDCKR 1416

Query: 1451 NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKT 1510
                 +Q +  E +D    V  + +    V P+EV+ D+E       I  NQ      + 
Sbjct: 1417 FIVQKIQTIKKELKDKIG-VNDEFKEPKEVIPVEVDWDEEGDVPLLNIVPNQKRHRMIRE 1475

Query: 1511 IDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTP-----------------DEFERL 1553
              E + +        E E E+    E+   K+ PR                   ++   +
Sbjct: 1476 SSESSEQDV------ESEDEMEVEREKEQPKEEPREEQKEDEENEDKAVTQEMVEDLYEI 1529

Query: 1554 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1613
             +   N+S  WI+ +  +  ++ V KA    + AL+ I + +  ++ NIW AY  +E +Y
Sbjct: 1530 AQKDQNNSEKWIELIRAVRKIS-VVKALFYCQTALRNIALDKTQDRENIWKAYLQIEAKY 1588

Query: 1614 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1673
                E       Q AL+ CD KK+   +  +++  +   + + +   +++K K S +V+ 
Sbjct: 1589 RTNSEFQTA--LQDALRVCDVKKILFYMRSVFKSLQNISMEENMYTILLQKVKGSGRVYR 1646

Query: 1674 RRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1732
            +     ++  ++E    ++ +A   L + K++K   + A L++K G  D+GRSMFE IL 
Sbjct: 1647 KMCSFYMRTSREENAMVLLSKARKMLTKPKYMKLRIKMAQLQYKYGSVDKGRSMFESILE 1706

Query: 1733 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1792
            E+PKR DLW++YLD E R+G+  +IR LFER +++ L  K MK    KYL++E + G+  
Sbjct: 1707 EFPKRYDLWNVYLDMESRVGETPIIRRLFERIVAMKLSTKSMKTFLTKYLKFETNNGDNA 1766

Query: 1793 RIEYVKQKAMEYVES 1807
            R+E+V+Q A +YVES
Sbjct: 1767 RMEHVRQIAQKYVES 1781



 Score = 76.3 bits (186), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 186/450 (41%), Gaps = 43/450 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G  V+GKV  +     ++     V  +C   H++E         F  G  +  RVL +K+
Sbjct: 442 GAFVEGKVKTITKSYLVISVSKYVTGICFRKHVAEIPPDDLSDVFVKGQSVKARVLSIKN 501

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-KHGCFVRFYNGVQGFAPRSE 492
                T KK+ +  +L+I++S  +A D  IT+  +  ++ K G  + F+  V+G+ P  E
Sbjct: 502 NAFEFTMKKSYMVPELSIIASTEDALDNQITYAMVDHVDPKTGVNISFFGDVKGYVPIVE 561

Query: 493 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL------GS 546
           L  D   E  S++ +      R+  S     +I  S  + P     D +V L      G 
Sbjct: 562 L-FDHRVEAISLFSI-----LRVRVSSVEKGKITASLNLYPKEGKVDKIVDLISKFQVGE 615

Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD 606
           + SG V     N ++V +     S  +I   H  +  +  + ++  IK G  F+Q LVL 
Sbjct: 616 IYSGTVIGKRMNKMLVRLRKDDASYVSILPNHYVEDGDDGSGIQEKIKNGSVFEQCLVLS 675

Query: 607 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
           N +  + ++ K SLI    ++    S+    ++  G     +  GC V F+G+       
Sbjct: 676 NIAGKITITTKKSLIALKSKIAKCDSY---QTLEEG-----VYVGC-VNFVGQF------ 720

Query: 667 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR---ITLSLKQSCCSSTDASFMQEHFL 723
            KAV          +Y    +  + +D+ ++  +     L L Q+       +   +HF 
Sbjct: 721 -KAV--------VVFYNHVQISVHAIDITNDQDKPMNTLLKLGQTVVGKVRRAKEVKHFN 771

Query: 724 LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS-FEEHSDVYGFITHH 782
           + E        +         + F+ GS I   V E+ D+G++ S + +++    F    
Sbjct: 772 MRENAGYCMPEEAFLLPAFPQKPFVFGSEIVITVDETQDYGIIGSAYLDNTKYTTFTPKA 831

Query: 783 QLAG--ATVESGSVIQAAILDVAKAERLVD 810
            + G  AT   G+  +A ++   +   +VD
Sbjct: 832 GIKGEIATFAIGNTFKAVVIGFDQKTNIVD 861


>gi|70928557|ref|XP_736472.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56511034|emb|CAH85244.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 274

 Score =  163 bits (412), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 93/274 (33%), Positives = 152/274 (55%), Gaps = 29/274 (10%)

Query: 1559 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1618
            N S +WI Y+A+ L   ++++AR+IAERAL+TI+I    EKLNI++ Y N+E  YG+   
Sbjct: 3    NKSTIWISYIAYYLEKGNIQEARNIAERALKTIDIHLIEEKLNIYLCYINMECAYGDNLN 62

Query: 1619 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1678
            +    +F+RAL   + K ++L  + + +  ++     EL  + IKKFK+S K+W R ++ 
Sbjct: 63   D----IFKRALLVNNEKSIYLHTMNILKMNKKYNELKELCEEAIKKFKYSKKIWTRYLEL 118

Query: 1679 LLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1736
            L      +E    ++ ++L +LP+ KH+  I   A  E+K    +RG++ FE ++ EYPK
Sbjct: 119  LHNTLNDEEYAHNILLKSLHALPKRKHLNIIINAARFEYKYSNIERGKNYFEKLIQEYPK 178

Query: 1737 RTDLWSIYLDQEIR-----------------------LGDVDLIRGLFERAISLSLPPKK 1773
            R+D+W  YLD  I                        L ++  IR +FER  S+    + 
Sbjct: 179  RSDIWFTYLDIHINSLTKGKKNENDDENKKKKIKKLTLNELQFIRNIFERFSSIKFKTRV 238

Query: 1774 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
            MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 239  MKMIFTKWLLFEKNHGSVNTQKMVQKKAYDYVES 272


>gi|242223612|ref|XP_002477408.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723046|gb|EED77394.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1088

 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 159/592 (26%), Positives = 267/592 (45%), Gaps = 116/592 (19%)

Query: 893  GQSVIATVMALPSSSTAGRL-------LLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 945
            GQ + A ++   S ST  R        +L L       +  SK +  + +Y VG++++A 
Sbjct: 230  GQKIKARILYDVSPSTPPRFALSVVEHVLKLSPKHAAGSDGSKDSSLQDAYPVGAILEA- 288

Query: 946  ITEIKPLELRLKFGI------GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK 999
               +K + +  + G+      G  G +HI++V+D+    +     ++K+G    AR+   
Sbjct: 289  ---VKVVRVEAERGLVVEISSGLEGFVHISQVSDEHVPSLSPSSGHWKVGTVHKARVTGH 345

Query: 1000 SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1059
                        +LS +PS+L       +   +  +V +G+ + G V ++      +++S
Sbjct: 346  -----FHLDGCLQLSFRPSVL------EQKFLQVGEVQVGELIKGTVKRLTESALFVSMS 394

Query: 1060 RHLKAQLFILDSAYEPSELQEFQRRFHIG--------KAVTGH----------------- 1094
              +     +  + Y    L+  QRRF  G        KAV                    
Sbjct: 395  GSVDG--VVWPNHYADIALKHPQRRFRPGVVAELQKDKAVITLQPTQVRALLSLNNLANR 452

Query: 1095 ----------------------VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1132
                                  V+S N EK  + +  +P +    +  +   + N+ T I
Sbjct: 453  RGVSLTQLRTSLKTDEKLQDLVVVSRNPEKGFVLVATKPKE---KESLLQKGSLNLDT-I 508

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ-FDPLSG 1191
              G +VGGR+  +  G  G +V++   + G +H T        D    +D G+ F P+  
Sbjct: 509  QVGQVVGGRV--LRHGRQGALVKLTSSISGTLHPT--------DTCDDFDSGRAFPPVDS 558

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV--DTPGKHLEKIE 1249
                  +K  VL I R  R     +L+L        ST  S L  D   D     ++ + 
Sbjct: 559  -----ILKAVVLSIDRDKR-----QLTL--------STRPSRLYPDQAKDVKDHEVDGVS 600

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            DL     V+G++KNV   G F+ML R +DA+V +  L D YV+  +  F   +LV GRVL
Sbjct: 601  DLKVGQTVRGFIKNVAEHGIFVMLGRHIDARVQIKELFDEYVKDWKSHFAANQLVKGRVL 660

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            SV+   K+VE+T ++ D +  ++S+ + L++L  G  V G++K++E YGLFI I  + L 
Sbjct: 661  SVDFDKKQVEMTFRSGDLKRDARSQ-STLADLSEGQKVDGRVKKIEDYGLFIEIAGSKLS 719

Query: 1370 GLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
            GLCH SELS++   ++      +R  ++VK  IL +D+EKRRIS G+K SYF
Sbjct: 720  GLCHKSELSDNKDADVTLALRSFRENDQVKAVILSIDREKRRISFGLKPSYF 771



 Score =  140 bits (354), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/201 (38%), Positives = 127/201 (63%), Gaps = 7/201 (3%)

Query: 1505 TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1564
            + E  T D++  R  K+++++E EQ++ A     +    P +  +FER++  SPNSS++W
Sbjct: 884  SSEENTDDDEQGRKKKRRKRKEIEQDLTAD----MHTKMPESNTDFERVLLGSPNSSYLW 939

Query: 1565 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1624
            I+YM+F L +++VEKAR IA RAL+TIN REE EKLN+WVA  NLEN +G   +E++   
Sbjct: 940  IQYMSFQLQISEVEKAREIARRALRTINFREEQEKLNVWVALLNLENSFGT--DESLEAT 997

Query: 1625 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ 1684
            F+ A ++ D K +HL L  + +++E+++ A+E   +  KKF  S KVW    +  LK+  
Sbjct: 998  FKDAARHNDSKTIHLRLANILDQSEKHEKAEEQYKRTCKKFSQSSKVWTLFGEHYLKRGM 1057

Query: 1685 -EGVQAVVQRALLSLPRHKHI 1704
             E  + ++ R+L SL + K +
Sbjct: 1058 LEEARKLLPRSLQSLEKRKRM 1078



 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 193/838 (23%), Positives = 336/838 (40%), Gaps = 145/838 (17%)

Query: 44  PILDNEIEANEDNLLPTIFHV---GQLVSCIV-------------LQLDDDKKEIGKRKI 87
           P  D E +    + +P +FH+   GQ V  +V             L    D+ +   R+I
Sbjct: 16  PPSDEEDDGPSKSRIPDLFHIFPAGQYVRAVVSAVHPPGATDASVLGRARDEVQKASRRI 75

Query: 88  WLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-----RNNLA 142
            LSL    +   +S   ++ G  L+A VKSIEDHGYIL  G+P  +GFL      +    
Sbjct: 76  ELSLIPEKVNASVSKSDLRAGFTLSAAVKSIEDHGYILDLGIPDVSGFLSFKEAKKGPFG 135

Query: 143 ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVST 202
           +++ + V  G L+   V  I    +   +S D  +V      ++   S+  ++PG +V +
Sbjct: 136 DDNKLPV--GRLIDVCVVKITGNGRTCTVSVDSASVRDASLSEVA--SVTSILPGTLVQS 191

Query: 203 RVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDP-TSR 260
            V +++ +G+ L  L YF GT+D FHL+      + + +Y   +K+ ARIL+ V P T  
Sbjct: 192 LVTAVVPDGLNLQVLGYFVGTIDQFHLR----AGDVEENYKVGQKIKARILYDVSPSTPP 247

Query: 261 AVGLTLNPYLLHNRAPPSHVK---------------VGDIYDQSKVVRVDRGLGLLLDIP 305
              L++  ++L  +  P H                 VG I +  KVVRV+   GL+++I 
Sbjct: 248 RFALSVVEHVL--KLSPKHAAGSDGSKDSSLQDAYPVGAILEAVKVVRVEAERGLVVEIS 305

Query: 306 STPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFE 362
           S       +V IS V++E V  L      +K G+  + R+ G  HL+G      + S  E
Sbjct: 306 S---GLEGFVHISQVSDEHVPSLSPSSGHWKVGTVHKARVTGHFHLDGCLQLSFRPSVLE 362

Query: 363 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 422
                  +V+ G ++KG V  +      V   G V  +    H ++  +  P ++F+ G 
Sbjct: 363 QKFLQVGEVQVGELIKGTVKRLTESALFVSMSGSVDGVVWPNHYADIALKHPQRRFRPGV 422

Query: 423 ELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDRLITHGWITKIEKHGCFVRF 480
                V  ++  +  +T + T V++ L++  L++    +   +     T  +     V  
Sbjct: 423 -----VAELQKDKAVITLQPTQVRALLSLNNLANRRGVSLTQLRTSLKTDEKLQDLVVVS 477

Query: 481 YNGVQGFA-----PRS-ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534
            N  +GF      P+  E  L  G        VGQVV  R++                  
Sbjct: 478 RNPEKGFVLVATKPKEKESLLQKGSLNLDTIQVGQVVGGRVLR----------------- 520

Query: 535 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI--PTEHLADHLEHATVMKSV 592
              +  LVKL S +SG +                +  G    P +         +++K+V
Sbjct: 521 HGRQGALVKLTSSISGTLHPTD--------TCDDFDSGRAFPPVD---------SILKAV 563

Query: 593 IKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCN 646
           +         L +D +   L LS + S +   Q            S +     V G++ N
Sbjct: 564 V---------LSIDRDKRQLTLSTRPSRLYPDQAKDVKDHEVDGVSDLKVGQTVRGFIKN 614

Query: 647 IIETGCFVRFLGRLTGFAPRSKAV-DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
           + E G FV  LGR      + K + D    D    +   Q V+  +L V+ +  ++ ++ 
Sbjct: 615 VAEHGIFV-MLGRHIDARVQIKELFDEYVKDWKSHFAANQLVKGRVLSVDFDKKQVEMTF 673

Query: 706 KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-----IIGSVIEGKVHES 760
           +         S        +  +A L   +     +K +E +     I GS + G  H+S
Sbjct: 674 RSGDLKRDARS--------QSTLADLSEGQKVDGRVKKIEDYGLFIEIAGSKLSGLCHKS 725

Query: 761 NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFI 818
                 +S  + +DV        LA  +      ++A IL + + +R +   LK  + 
Sbjct: 726 E-----LSDNKDADV-------TLALRSFRENDQVKAVILSIDREKRRISFGLKPSYF 771


>gi|67587680|ref|XP_665268.1| rrp5 protein [Cryptosporidium hominis TU502]
 gi|54655854|gb|EAL35037.1| rrp5 protein [Cryptosporidium hominis]
          Length = 410

 Score =  160 bits (404), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 162/298 (54%), Gaps = 36/298 (12%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            P T D+FERL+ +  + S +WI+YM++ L + D++KAR +AER+L+ I+++EE E+ NIW
Sbjct: 106  PSTIDDFERLLITHRDVSSLWIRYMSYYLDLEDLDKARMVAERSLKQISVKEEMERWNIW 165

Query: 1604 VAYFNLENEYGNP----------------PEEAVVK----VFQRAL-QYCDPKKVHLALL 1642
            +AY N+E  YG                   E+ + K    +  RAL    D KK+++ + 
Sbjct: 166  IAYINMEIAYGKNELLTSKGENNISSLGGKEDGIPKNVRQILDRALMNVTDQKKLYIQIF 225

Query: 1643 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPR 1700
                R  + +    LL + +KKF+ S K+W+  +  L +   Q++    V+Q++L S+ +
Sbjct: 226  SSLRRHSKEEQGLALLEEGLKKFQTSRKLWVTYLTCLYESDNQKKARDEVIQKSLKSVSK 285

Query: 1701 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--------- 1751
             K ++ I+  A LEF+ G  +RGR++FE +L E  KR DLWS Y D   +L         
Sbjct: 286  DKVVRLITDIARLEFEYGNINRGRTIFENLLEENSKRMDLWSQYFDILTKLCSKDDPKSN 345

Query: 1752 ----GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805
                  +++ R +F   I  +  P+ MK +F ++L +EK  G  +  ++V+  A+ YV
Sbjct: 346  SSMADHIEMARSIFSSCIEKNFKPRSMKMIFTRWLSFEKEFGSLQTQKHVQDLAINYV 403


>gi|340387142|ref|XP_003392067.1| PREDICTED: protein RRP5 homolog, partial [Amphimedon queenslandica]
          Length = 209

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 137/207 (66%), Gaps = 3/207 (1%)

Query: 1596 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1655
            E+EKLN+WV + NLEN YG+   E++ +VF+RALQ  D  +++  L+ +Y  + + + AD
Sbjct: 1    EDEKLNLWVGFLNLENMYGDS--ESLDQVFKRALQQNDQFEIYTRLIDIYVTSNKPESAD 58

Query: 1656 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1714
            +L   M KKF  + +VW +  + L++Q + +  + ++QR+  SL + +H+    Q A LE
Sbjct: 59   QLYQIMCKKFSSNIQVWSQYGRFLMEQGKADLARKILQRSFKSLTKKQHVDITKQFAQLE 118

Query: 1715 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1774
            FK G  +RG ++FE ++S YP++ D+WS+Y+D   + G++D +R +FERA+SL L   K 
Sbjct: 119  FKYGEMERGCTLFENLVSSYPRKVDIWSVYIDMLTKKGEMDRVRDVFERAVSLKLSSVKK 178

Query: 1775 KFLFKKYLEYEKSVGEEERIEYVKQKA 1801
            +FL+K+Y+E+E+  G +  +E V+ K+
Sbjct: 179  QFLYKRYIEFERKHGTQSLVETVQAKS 205


>gi|255595431|ref|XP_002536303.1| hypothetical protein RCOM_1962080 [Ricinus communis]
 gi|223520127|gb|EEF26080.1| hypothetical protein RCOM_1962080 [Ricinus communis]
          Length = 109

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 94/110 (85%), Gaps = 1/110 (0%)

Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1318
            GYVKNV  KGCFI LSRK+DAK+LLSNLSD +V SPE+EFPIGKLV GRVLSVEPLSKRV
Sbjct: 1    GYVKNVAPKGCFIFLSRKIDAKILLSNLSDEFVVSPEEEFPIGKLVTGRVLSVEPLSKRV 60

Query: 1319 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
            EVTLK  ++++  +SE+N+LS L+VGD   G+IKRVE YGLFI I++TNL
Sbjct: 61   EVTLK-KNAKSTGKSELNDLSRLNVGDTASGRIKRVEPYGLFIAIDHTNL 109


>gi|300123256|emb|CBK24529.2| unnamed protein product [Blastocystis hominis]
          Length = 967

 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 169/289 (58%), Gaps = 8/289 (2%)

Query: 1522 KEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1580
            K  + RE EI A E  L  + A P +  +FERL+   P SS +WI+Y ++ LS+ D  KA
Sbjct: 677  KRPQLREAEIAAKERSLASQSAQPASEADFERLLVGQPTSSELWIRYASWFLSLGDAAKA 736

Query: 1581 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1640
            R++  RALQ++    E+E+ N+W+A  NLE+E+G+  E A+  V++ A Q  +P++  L 
Sbjct: 737  RAVLRRALQSVPGHLEDERANLWLALLNLESEFGD--EAALRDVYKEARQAMEPRRAGLH 794

Query: 1641 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLS 1697
            L  L E  ++      +  ++ K+ +   KVWL   +  LKQ   ++ G    ++RA  +
Sbjct: 795  LAALLEAKQKWAEVYSVWKQLAKENRGDVKVWLGWCECFLKQGLPRESG--ETLRRAQEA 852

Query: 1698 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1757
            + R +  + +S  AIL ++    D+GR++FE ++S    R DLW++Y+DQE + G+V+ +
Sbjct: 853  VGRSEKARLLSGYAILLYRYKQRDQGRTIFEDLVSSLKNRLDLWNLYVDQETKAGNVEYV 912

Query: 1758 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
            RGLF R + L +     K +FKK++ +E + G+EE    V++   +Y++
Sbjct: 913  RGLFGRMVELKMSVNSAKRVFKKWIAFEDAHGDEEHAAKVEEIVQQYID 961


>gi|302776674|ref|XP_002971488.1| hypothetical protein SELMODRAFT_412223 [Selaginella moellendorffii]
 gi|300160620|gb|EFJ27237.1| hypothetical protein SELMODRAFT_412223 [Selaginella moellendorffii]
          Length = 382

 Score =  157 bits (396), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 161/307 (52%), Gaps = 71/307 (23%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 147  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 206

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
             +E++L  + S+ +S            G+IV   I  +E++G+FI++  +    LCHV+E
Sbjct: 207  HIEMSLAATTSQDSS-----GWKKFGAGEIVSDCIHNIEAFGIFISLAKS---CLCHVAE 258

Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +S D + ++ T+Y+ G+ V+VKILKVD E +RISLGMK+SY   + D +    E   +EA
Sbjct: 259  VSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKASYLTPE-DGI----EPMEEEA 313

Query: 1437 IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDN 1496
            I E  S N + L++N +   +D      D GS    Q+   A+    E  L  +QP    
Sbjct: 314  INEEPS-NTNVLMDNDARVEEDY----LDLGSKRFPQLCMEAAAK--EKLLQKDQP---- 362

Query: 1497 GISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS 1556
                                                           P T D+FERLV +
Sbjct: 363  -----------------------------------------------PETKDDFERLVAA 375

Query: 1557 SPNSSFV 1563
            SPN S++
Sbjct: 376  SPNKSYM 382



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 80/299 (26%)

Query: 1051 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1110
            + WA L +S HLK  LF        SEL+ F+ RF +G     H+ S+N E+K + L L 
Sbjct: 56   DNWAWLVLSPHLKGCLF--------SELERFKERFKVGNPFQCHIRSVNHERKQVDLSLH 107

Query: 1111 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ--------------- 1155
                      +  S++  +    +GD++G RI+++ +GVGG  VQ               
Sbjct: 108  ----------LKTSDEQFK----KGDLLGRRITRVFAGVGGHTVQGRWESFGKVHGFVKN 153

Query: 1156 ---------IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
                     + P L  R+    L N  V +P        F P      G+ +  ++L I 
Sbjct: 154  VTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAE-----MFPP------GKVISGRILSIE 202

Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1266
                 + H+E+SL       ++T S D S             +      IV   + N+ +
Sbjct: 203  PL---SGHIEMSL-------AATTSQDSSG-----------WKKFGAGEIVSDCIHNIEA 241

Query: 1267 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
             G FI L++     V  + +S  +++     + +G+ V  ++L V+  +KR+ + +K S
Sbjct: 242  FGIFISLAKSCLCHV--AEVSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKAS 298


>gi|296412695|ref|XP_002836057.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629859|emb|CAZ80214.1| unnamed protein product [Tuber melanosporum]
          Length = 1070

 Score =  156 bits (395), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 184/756 (24%), Positives = 326/756 (43%), Gaps = 89/756 (11%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA---------------- 52
           G  + G V+++++ DL + LP  L G      ++  +L+   EA                
Sbjct: 140 GTLVLGCVSQISQTDLALSLPNNLTGFV-PLTSISELLNKNFEALVRDSDDDEDEDVEEN 198

Query: 53  --------NEDNL-LPTIFHVGQLVSCIVL---QLDDDKKEIG----KRKIWLSLRLSLL 96
                   +ED + L ++F +G  +   V+   +  + K   G    K++I LSL   L 
Sbjct: 199 IETAKSESSEDGVDLKSMFQIGPYLRAYVVSSSEPTNSKYSTGSKRFKKRIELSLDPVLT 258

Query: 97  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGI-DVKPGLL 154
             GL+   +  G  + A V S+EDHG +++ G+ +   GFL    L +   + D K G +
Sbjct: 259 NNGLTTTELVVGCTVQASVTSVEDHGLVMNLGIGNHLKGFLSSKELGKGRSVTDAKEGQV 318

Query: 155 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 214
           +      +    K+V LS     + +  TK  K I                     GV  
Sbjct: 319 MLCTTIGLSSNGKIVKLSGG---LEQKPTKGGKAI---------------------GVAG 354

Query: 215 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-- 272
             +      +D FH    +   + ++ +   +K+ A ++      R + L++ P++L   
Sbjct: 355 KVMGLVDAKMDFFHASG-WEEKDIESKFKVGEKIKAHVIATYSEPRKLALSILPHVLPFT 413

Query: 273 ---NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE-EVRKL 328
                 P + + +  I + +K + ++  +GL LD+    V  P +V IS ++ + ++  L
Sbjct: 414 QPIENEPTTILPIATIINTAKALNIEPKIGLFLDVGVPGV--PGFVHISRISSDSKIEAL 471

Query: 329 EKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 385
                 Y+  S   VRI+G+  ++GL    ++    +       D+K G VVKG +  V 
Sbjct: 472 SNDSGLYQTDSVHMVRIIGYNSMDGLYLVSMEQKVLDQSFLRVKDIKIGEVVKGTIDRVL 531

Query: 386 SFG-AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKK 442
             G  IV    G+  +    H+S+ ++  P KKF+ G E+  RVL      +++ +  KK
Sbjct: 532 HSGRVIVNLAEGITGIVDELHLSDVKLKHPEKKFREGVEVKARVLLTDPPKRKVRLILKK 591

Query: 443 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
            +V S   I+SSY +      + G + KI  +G  V+F+  V GF P SE+      +P 
Sbjct: 592 AIVNSDAPIISSYKDTNSGTRSVGTLVKILPNGAIVKFFLDVCGFLPVSEMREAYIQDPH 651

Query: 503 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVDVVTP 557
               VGQ V   ++S  PAS+++ +S    P    E   V L     G +VSG V   + 
Sbjct: 652 EHSTVGQSVNVHVLSVDPASQKLRVS-CKDPNLFGEAHKVTLAKLPPGDVVSGTVVEKSA 710

Query: 558 NAVVVYVIAKGYS--KGTIPTEHLADHLEHAT--VMKSVIKPGYEFDQLLVLDN--ESSN 611
           + ++V +   G    +G + T  L D     +  V K  ++ G + D LLVL+   E  +
Sbjct: 711 DDLIVEINGLGAEGIRGVLVTGQLTDGSRDKSLGVFKK-LRAGQKLDDLLVLEKHEERRS 769

Query: 612 LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
           + LS K SL+ +A+   + S    ++   +V G+V N      FV F G + G   +   
Sbjct: 770 ITLSMKPSLVKAAKGGSMISKFEDVNEGEIVRGWVRNTTLQSLFVGFAGGIVGVVYKKDR 829

Query: 670 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
               ++  +  Y   QS+   ++ ++    R  LSL
Sbjct: 830 PAEVQSLPNFGYVKNQSITCRVVYIDPSERRFRLSL 865



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 164/797 (20%), Positives = 295/797 (37%), Gaps = 153/797 (19%)

Query: 369  SDVKPGMVVKGKVIAVDSFGAIVQFPGG---------------------VKALCPLPHMS 407
            +D K G V+    I + S G IV+  GG                     V A     H S
Sbjct: 311  TDAKEGQVMLCTTIGLSSNGKIVKLSGGLEQKPTKGGKAIGVAGKVMGLVDAKMDFFHAS 370

Query: 408  EFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR------ 461
             +E      KFKVG ++   V+       T +  + L  S L  +  + +  +       
Sbjct: 371  GWEEKDIESKFKVGEKIKAHVIA------TYSEPRKLALSILPHVLPFTQPIENEPTTIL 424

Query: 462  ----LITHGWITKIE-KHGCFVRF-YNGVQGFAPRSELGLDPGCEP----SSMYHVGQVV 511
                +I       IE K G F+     GV GF   S +  D   E     S +Y    V 
Sbjct: 425  PIATIINTAKALNIEPKIGLFLDVGVPGVPGFVHISRISSDSKIEALSNDSGLYQTDSVH 484

Query: 512  KCRIM--SSIPA-------SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 562
              RI+  +S+          + ++ SF+    RV +   +K+G +V G +D V  +  V+
Sbjct: 485  MVRIIGYNSMDGLYLVSMEQKVLDQSFL----RVKD---IKIGEVVKGTIDRVLHSGRVI 537

Query: 563  YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 620
              +A+G + G +   HL+D  L+H    +   + G E   ++L+ D     + L  K ++
Sbjct: 538  VNLAEGIT-GIVDELHLSDVKLKHP---EKKFREGVEVKARVLLTDPPKRKVRLILKKAI 593

Query: 621  INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 680
            +NS   + S     +  +   G +  I+  G  V+F   + GF P S+  +    D  + 
Sbjct: 594  VNSDAPIISSYKDTNSGTRSVGTLVKILPNGAIVKFFLDVCGFLPVSEMREAYIQDPHEH 653

Query: 681  YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 740
              VGQSV  ++L V+  + ++ +S K          F + H +   K+            
Sbjct: 654  STVGQSVNVHVLSVDPASQKLRVSCKDPNL------FGEAHKVTLAKLPP---------- 697

Query: 741  LKWVEGFIIGSVIEGKVHE--SNDFGVVVSFEEHSDVYGFITHHQLA-GATVESGSVIQA 797
                     G V+ G V E  ++D  V ++      + G +   QL  G+  +S  V + 
Sbjct: 698  ---------GDVVSGTVVEKSADDLIVEINGLGAEGIRGVLVTGQLTDGSRDKSLGVFKK 748

Query: 798  ----------AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 847
                       +L+  +  R + LS+K   +          +A K        +D+   +
Sbjct: 749  LRAGQKLDDLLVLEKHEERRSITLSMKPSLV----------KAAKGGSMISKFEDVNEGE 798

Query: 848  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS 907
             V   V       L +        + Y        Q  P   ++  QS+   V+ +  S 
Sbjct: 799  IVRGWVRNTTLQSLFVGFAGGIVGVVYKKDRPAEVQSLPNFGYVKNQSITCRVVYIDPSE 858

Query: 908  TAGRLLL--------LLKAISETETSSSK--------RAKKKSSYDVGSLVQAEITEIKP 951
               RL L           A++ T   + +        R K    Y  G L +A++  ++ 
Sbjct: 859  RRFRLSLNSVKSGEGEAPAVANTAGDTERLTVNPVDARFKHIDDYTSGRLTKAKVVSVQE 918

Query: 952  LELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARII-----------A 998
             +L +K      GRI ++ V +  D     ++  ++F  G  +  +II           A
Sbjct: 919  TQLNVKLADNVQGRIDVSLVFETWDAIKDKKSPLASFGKGSVLGVKIIGIHDARNHRFLA 978

Query: 999  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC-----DVSIGQRVTGYVYKVDNEW 1053
             +++    K+ ++ELS +P  +    I      E C     D++       ++  +  E 
Sbjct: 979  ITHQKSNTKTPIFELSARPGHIKEEGI------ERCITKLEDITPNSTWVAFLNNISEEC 1032

Query: 1054 ALLTISRHLKAQLFILD 1070
            A   I   ++ ++ ILD
Sbjct: 1033 ARANILPGIRGRIRILD 1049



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 142/327 (43%), Gaps = 39/327 (11%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            I  G++V G I ++L   G ++V +   + G V    L ++ +  P     E +F     
Sbjct: 517  IKIGEVVKGTIDRVLHS-GRVIVNLAEGITGIVDELHLSDVKLKHP-----EKKFR---- 566

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
              EG  VK +VL      R    V L L+ ++              V++    +   +D 
Sbjct: 567  --EGVEVKARVLLTDPPKR---KVRLILKKAI--------------VNSDAPIISSYKDT 607

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
            +      G +  +   G  +     +   + +S + + Y++ P +   +G+ V   VLSV
Sbjct: 608  NSGTRSVGTLVKILPNGAIVKFFLDVCGFLPVSEMREAYIQDPHEHSTVGQSVNVHVLSV 667

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1371
            +P S+++ V+ K  D     ++    L+ L  GD+V G +    +  L + I      G+
Sbjct: 668  DPASQKLRVSCK--DPNLFGEAHKVTLAKLPPGDVVSGTVVEKSADDLIVEINGLGAEGI 725

Query: 1372 CHV---SELSEDHVDNIETIY---RAGEKV-KVKILKVDKEKRRISLGMKSSYFKNDADN 1424
              V    +L++   D    ++   RAG+K+  + +L+  +E+R I+L MK S  K     
Sbjct: 726  RGVLVTGQLTDGSRDKSLGVFKKLRAGQKLDDLLVLEKHEERRSITLSMKPSLVKAAKGG 785

Query: 1425 LQMSSEEESDEAIEEVGSYNRSSLLEN 1451
              +S  E+ +E  E V  + R++ L++
Sbjct: 786  SMISKFEDVNEG-EIVRGWVRNTTLQS 811



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            + ++ +G++V G I RV   G  I      + G+     LS+  + + E  +R G +VK 
Sbjct: 514  VKDIKIGEVVKGTIDRVLHSGRVIVNLAEGITGIVDELHLSDVKLKHPEKKFREGVEVKA 573

Query: 1398 KILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGS 1442
            ++L  D  KR++ L +K +   +DA    +SS ++++     VG+
Sbjct: 574  RVLLTDPPKRKVRLILKKAIVNSDAP--IISSYKDTNSGTRSVGT 616


>gi|302776688|ref|XP_002971494.1| hypothetical protein SELMODRAFT_412242 [Selaginella moellendorffii]
 gi|300160626|gb|EFJ27243.1| hypothetical protein SELMODRAFT_412242 [Selaginella moellendorffii]
          Length = 606

 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 139/219 (63%), Gaps = 19/219 (8%)

Query: 1237 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1296
            D+  PG+    +E       + G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P +
Sbjct: 201  DLKRPGRGKMGLE-------LSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAE 253

Query: 1297 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1356
             FP GK+++GR+LS++PLS  +E++L  + S+ +S            G+IV G+I  +E+
Sbjct: 254  MFPPGKVISGRILSIKPLSGHIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEA 308

Query: 1357 YGLFITIENTNLV------GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1410
            +G+FI++  +++        LCHVSE+S D + ++ T+Y+ G+ V+VKILKVD E +RIS
Sbjct: 309  FGIFISLAESDVFLVCAPGCLCHVSEVSYDFIQDLSTLYKVGQWVQVKILKVDAETKRIS 368

Query: 1411 LGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1449
            LGMK+SY     +  +  +EE S+  +  + S +  +L+
Sbjct: 369  LGMKASYLTEPMEE-EAINEEPSNTNVPTIVSIHARTLV 406



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 155/360 (43%), Gaps = 60/360 (16%)

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            +LS++PS L  ++    ++  E  V+I Q V  YV +V + WA L +S HLK  LFILD+
Sbjct: 75   DLSLRPSELAGNDAACSVITFE-TVTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDT 133

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            + +PSEL+ F+ RF +G     H+      +           D +      +S +    F
Sbjct: 134  SDDPSELERFKERFKVGDPFQCHIRKRGPVRPTDYTSFCWCWDILCKADGKVSENQ---F 190

Query: 1132 IHEGDIVG---------GRISKILSGV------GGLVVQIGPHLYGRVHFTELKNICVSD 1176
            I+ G +           G++   LSG        G  V + P L  R+    L N  V +
Sbjct: 191  IYRGTVRKVLDLKRPGRGKMGLELSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQN 250

Query: 1177 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1236
            P        F P      G+ +  ++L I + + G  H+E+SL       ++T S D S 
Sbjct: 251  PAE-----MFPP------GKVISGRILSI-KPLSG--HIEMSL-------TATTSQDSS- 288

Query: 1237 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK----LDAKVLLSNLSD---G 1289
                        +      IV G + N+ + G FI L+      + A   L ++S+    
Sbjct: 289  ----------GWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGCLCHVSEVSYD 338

Query: 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN--LSNLHVGDIV 1347
            +++     + +G+ V  ++L V+  +KR+ + +K S      + E  N   SN +V  IV
Sbjct: 339  FIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKASYLTEPMEEEAINEEPSNTNVPTIV 398


>gi|302811444|ref|XP_002987411.1| hypothetical protein SELMODRAFT_426255 [Selaginella moellendorffii]
 gi|300144817|gb|EFJ11498.1| hypothetical protein SELMODRAFT_426255 [Selaginella moellendorffii]
          Length = 378

 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 126/185 (68%), Gaps = 12/185 (6%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            V G+VKNVT KGCF++LS  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 160  VHGFVKNVTEKGCFVILSPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 219

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV------G 1370
             +E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++        
Sbjct: 220  HIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLPESHVFLVCAPGC 274

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1430
            LCHVSE+S + + ++ T+Y+ G+ V+VKILKVD E +R+SLGMK+SY   + D ++   E
Sbjct: 275  LCHVSEVSYNFIQDLSTLYKVGQWVQVKILKVDAETKRVSLGMKASYLTPE-DGIKPMEE 333

Query: 1431 EESDE 1435
            E  +E
Sbjct: 334  EAINE 338



 Score =  103 bits (258), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 143/324 (44%), Gaps = 83/324 (25%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            V+I Q V  YV +V + WA L +S HLK  LFILD++  PSEL+ F+ RF +G     H+
Sbjct: 46   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDNPSELERFKERFKVGDPFQCHI 105

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1155
             S+N E+K + L L P       KT D      + F  +GD++G RI+++ +GVGG  VQ
Sbjct: 106  RSVNHERKQVDLSLHP-------KTRD------EQF-KKGDLLGRRITRVFAGVGGHTVQ 151

Query: 1156 ------------------------IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
                                    + P L  R+    L N  V +P        F P   
Sbjct: 152  GRWESLGKVHGFVKNVTEKGCFVILSPSLEARIQLKNLSNSFVQNPAE-----MFPP--- 203

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
               G+ +  ++L I      + H+E+SL       ++T S D S             +  
Sbjct: 204  ---GKVISGRILSIEPL---SGHIEMSL-------TATTSQDSS-----------GWKKF 239

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL----------SNLSDGYVESPEKEFPIG 1301
                IV G + N+ + G FI L    ++ V L          S +S  +++     + +G
Sbjct: 240  GAGEIVSGRIHNIEAFGIFISLP---ESHVFLVCAPGCLCHVSEVSYNFIQDLSTLYKVG 296

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTS 1325
            + V  ++L V+  +KRV + +K S
Sbjct: 297  QWVQVKILKVDAETKRVSLGMKAS 320



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 113/268 (42%), Gaps = 28/268 (10%)

Query: 100 LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGID-----VKPGL 153
           ++ ETV     +  YV+ ++D+   L    P   G L   + ++N S ++      K G 
Sbjct: 41  ITFETVTIEQSVIRYVQEVKDNWAWLVLS-PHLKGCLFILDTSDNPSELERFKERFKVGD 99

Query: 154 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK-DLKGISIDLL---VPGMMVSTR------ 203
             Q  +RS++  RK V LS  P T  +   K DL G  I  +   V G  V  R      
Sbjct: 100 PFQCHIRSVNHERKQVDLSLHPKTRDEQFKKGDLLGRRITRVFAGVGGHTVQGRWESLGK 159

Query: 204 ----VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 259
               V+++ E G  +         + + +L N+F   N    +   K ++ RIL ++P S
Sbjct: 160 VHGFVKNVTEKGCFVILSPSLEARIQLKNLSNSF-VQNPAEMFPPGKVISGRILSIEPLS 218

Query: 260 RAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP---VSTPAYVT 316
             + ++L      + +       G+I   S  +      G+ + +P +    V  P  + 
Sbjct: 219 GHIEMSLTATTSQDSSGWKKFGAGEIV--SGRIHNIEAFGIFISLPESHVFLVCAPGCLC 276

Query: 317 -ISDVAEEEVRKLEKKYKEGSCVRVRIL 343
            +S+V+   ++ L   YK G  V+V+IL
Sbjct: 277 HVSEVSYNFIQDLSTLYKVGQWVQVKIL 304


>gi|123507674|ref|XP_001329471.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3]
 gi|121912426|gb|EAY17248.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3]
          Length = 1601

 Score =  154 bits (389), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 313/1423 (21%), Positives = 537/1423 (37%), Gaps = 288/1423 (20%)

Query: 28   LPGGLRGLARAADALDPILDNEIEA--NEDNL--LPTIFHVGQLVSCIVLQLDDDKKEIG 83
            LPG  RG  +  +  DP L     A  N++ L  L   F++G  +   V+         G
Sbjct: 75   LPGNARGTLQLTEINDPFLQRLQHAIKNDEELPELENFFNIGDFLMATVISA-------G 127

Query: 84   KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE 143
               + LS+R +L+    S+   +EG +    VKS ED GYI+  G  + T FLP      
Sbjct: 128  THPVELSIRPNLVN---SMIEPEEGRIFWGAVKSKEDRGYIIDLGKENVTAFLPF----- 179

Query: 144  NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISI-------DLLV 195
                   P  L  G      +   V  L    +++ KC +TK     S+       D L 
Sbjct: 180  -------PAQLEVG------QPAFVTLLKKTSESIYKCELTKKDFFPSVPTVKPFFDTLR 226

Query: 196  PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 255
            P  ++   V S   NG +      F G    +         +W         V  R + +
Sbjct: 227  PIDVLDGLVTSNFTNGALAINAQSFNGFCSKY---------SWPPGLTNGNNVQVRPVLI 277

Query: 256  DPTSRAVGLTLNPYLLHNRAPPS-HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 314
            D   + +  T  P +++   P     K+G     SKV R+   +G+   +P         
Sbjct: 278  DHAQKTIWFTAIPRIVNGERPYCLDAKIGSKV-TSKVSRIRYNVGIEFTMPDN------- 329

Query: 315  VTISDVAEEEVRKL--EKKYKEGSCVR-----VRILGFRHLEGLATGILKASAFEGLVFT 367
                    E +R    EK+ K  + +      VRI   R ++ L          +  VF+
Sbjct: 330  --------ENLRVFIPEKETKSHALMAGQDHVVRITERRPIDDLLLAADDPEIIDLAVFS 381

Query: 368  HSDVKPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
              DV PG ++   + A+ D  G  V+    + ALCP+ +       K G   K       
Sbjct: 382  ADDVHPGQILDATISAINDKIGIFVELSPFLTALCPVSYCDNDPEPKKGDVKKC------ 435

Query: 427  RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYN 482
             VL V    + V  K+  V S+L  + S   A +    +  TH  + K  K    V F N
Sbjct: 436  VVLSVSEGHVRVAMKEKFVTSELPRVESLEIAHNLCESKEWTHALVRKSGKSAIIVEFIN 495

Query: 483  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 542
            G+ G    S L +  G + S  Y  G V+K  I SS+    +IN           E  ++
Sbjct: 496  GLVGMIRSSSLPVSQGQDISKQYPQGYVIKTMI-SSVDGD-KINCV-----VSTDESQIL 548

Query: 543  KLGSLVSGVVDVVTPNAVVVYVIAK-GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
             LG   +  VD  T +AV V V AK G     I   H +D+   + ++   +  G +   
Sbjct: 549  TLGQTCTVTVDRFTEDAVYVRVPAKYGEINSVIQATHFSDYEPLSRLIFKNLNIGDKLRH 608

Query: 602  LLVLDNESSN--LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
              ++ N  +N     + K  +  + + +P D   I       G+V  I   G FV F GR
Sbjct: 609  ACLIRNPGTNAPAYFTMKRCIRENTESIPKDTKSIKAGEHYFGFVSGIQNYGSFVSFFGR 668

Query: 660  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST------ 713
             +G               S+   +G SV +  +D  +E G I L+   +   S       
Sbjct: 669  ASGLIH------------SRQLTLGDSVNA-FVDQVTEDGHIRLTTPIADGESIKFLDSF 715

Query: 714  --DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 771
              DA  + + +L++++I                        ++G   +S+++    S++ 
Sbjct: 716  LKDAKKLNDKYLIDQEIQ-----------------------VQGDGEKSDEY---FSYQL 749

Query: 772  HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 831
              D   +I    L    V++G+ ++ A  DV           K+VF              
Sbjct: 750  DED---WIC---LTNEKVKAGTTLKIAYADVLS---------KSVF-----------AVL 783

Query: 832  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 891
              K+ R    ++ V  TV  + E +     + ++   N  I    + +YN +   +K+  
Sbjct: 784  PPKKPRSIENNVVVKATVIGVFEPI----FICTV---NGRIVICPMVNYNNKT--EKKIA 834

Query: 892  NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 951
             G+ +  TV+   S S +     +LK   +    S          ++   V A IT +  
Sbjct: 835  VGEELEITVVD--SRSESDETFEVLKGYPQYLLKS----------EISQNVVATITSVND 882

Query: 952  LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1011
            +    K   G   RIH +++    S V E       +GQ V   ++   N      +FL 
Sbjct: 883  ISCNAKLNDGRTVRIHRSQL----SQVPE-------VGQQVKGSLMNGDN-----ATFLI 926

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL--FIL 1069
                 P  +              D  +GQ+VTG + KV N+   L++S  +   +    L
Sbjct: 927  TNPDSPQKIE-------------DFKVGQQVTGVITKVSNDSLRLSMSPFVLGTVSSLQL 973

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
             S       +     + +G    G V S++++   +  +   F   +             
Sbjct: 974  SSTNRKVVDKPLAESYSVGDLFEGWVSSVSEKMITVTGIDPSFSSNV------------- 1020

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                         +K+L       ++ G +   +V    LK + V+D +   DE QF+PL
Sbjct: 1021 -----------EFAKVLK------IKTGDYATVKVGNGSLKKLDVTDVI---DEYQFNPL 1060

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
            S   +G     KV+++                    +S  N S   +D+    K + KIE
Sbjct: 1061 SRLKKG-----KVIDVV------------------NVSEENVSMKLSDITGTPKEI-KIE 1096

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            +     I+QGYV +       + L+R +  ++   +++D +++     +P+G +V  +++
Sbjct: 1097 E---GEILQGYVCHAIKGALLVRLARNVTGRLPFGSIADCFIQDAAALYPLGTVVTVKIM 1153

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN-TNL 1368
                  K+ +  +  S  R+        + +L VGD+V G I      G+F+ + +  N 
Sbjct: 1154 ------KKTDSEITLSSKRSDITGVALTIQDLKVGDVVGGFITAANKNGVFVRLNDYQNK 1207

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
             GL H S L  +  D +  +     +V V++L+VD EK RISL
Sbjct: 1208 SGLVHHSML--NGKDPLSFVNLVNTRVDVEVLQVDLEKERISL 1248



 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 131/538 (24%), Positives = 241/538 (44%), Gaps = 57/538 (10%)

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
            P+ +L  G+V+ V  +S+   V++K SD  T +  EI     +  G+I+ G +       
Sbjct: 1059 PLSRLKKGKVIDVVNVSEE-NVSMKLSDI-TGTPKEIK----IEEGEILQGYVCHAIKGA 1112

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
            L + +   N+ G      +++  + +   +Y  G  V VKI+K  K    I+L  K S  
Sbjct: 1113 LLVRLAR-NVTGRLPFGSIADCFIQDAAALYPLGTVVTVKIMK--KTDSEITLSSKRSDI 1169

Query: 1419 KNDADNLQMSSEEESD------EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLA 1472
               A  L +   +  D       A  + G + R +  +N S  V    +  +D  S V  
Sbjct: 1170 TGVA--LTIQDLKVGDVVGGFITAANKNGVFVRLNDYQNKSGLVHHSMLNGKDPLSFV-N 1226

Query: 1473 QIESRASVPPLEVNLDDEQPDMD-NGI-----------------SQNQGHTDEAKTID-- 1512
             + +R  V  L+V+L+ E+  +  N I                   ++G   E   ID  
Sbjct: 1227 LVNTRVDVEVLQVDLEKERISLKFNEIHSQNQPQEQEQQQEMETESDEGAEPEEVEIDLD 1286

Query: 1513 --------EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1564
                           K+  +++ E++I+  E + ++  AP++  EF   + ++P+SS +W
Sbjct: 1287 EWLSDEEKVDEEEKEKEIRRKQTEEDIQRLEAKQIDPSAPKSDKEFTAALVANPHSSKLW 1346

Query: 1565 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE--EAVV 1622
            I YM F+ +  D ++A  I E+ L  + I E+ EK NI+ A   L      P    E  +
Sbjct: 1347 ISYMEFVYAGGDSKRAMEIGEQGLDKLPIGEKTEKSNIFQALITLIVLSAEPKHFMEECI 1406

Query: 1623 KVFQRALQYCDPKKVHLALLGLYERTEQNK--LADELLYKMIKKFKHSCKVWLRRVQRLL 1680
             + +RA Q  D +   +  L   +   QN+   + E     ++K K +  +W   +  LL
Sbjct: 1407 PIVERAAQTIDEE---VMWLRFAKTVHQNRKDFSQEAWKVALRKVKQNVTMWSSYLNSLL 1463

Query: 1681 KQQQ-EGVQAVVQRALLSLPR---HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1736
            + ++ +  +  ++R L    +    + ++   Q  I E++N   + GR+MFE +++E+P 
Sbjct: 1464 QDKKVDFAKDELKRCLSGTFQGLAKESVEVRKQFGISEYENEYTEHGRTMFENLINEFPT 1523

Query: 1737 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1794
            +  LW+ Y+D E + G+    R +FER  +L L   +MK   KK+  +E+  G +  I
Sbjct: 1524 KYQLWNAYVDAECKYGEHLKARNIFERMTTLDLKIDRMKQTLKKWRAFEEKNGNDPAI 1581


>gi|257206022|emb|CAX82662.1| putative DnaJ (Hsp40) homolog, subfamily C, member 2 [Schistosoma
           japonicum]
          Length = 1870

 Score =  154 bits (388), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 187/793 (23%), Positives = 339/793 (42%), Gaps = 124/793 (15%)

Query: 14  GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE-----DNL--LPTIFHVGQ 66
           GVV  +++  L I LP G  G     D  D   +   E+ E     D+L  L  +F VGQ
Sbjct: 9   GVVKSIHKLYLEIQLPHGFLGRVNIYDISDKYTELLRESAETGVIHDDLVELSEMFKVGQ 68

Query: 67  LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 126
           +V C + + D+ +     ++  +SL   ++ K +  + ++  MV    + S EDHGYI+ 
Sbjct: 69  IVRCFIKESDNSRGGGSNKRYLVSLNPKMVNKSVISKNLKPYMVFVGSIVSNEDHGYIVD 128

Query: 127 FGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT--- 183
            G+P  + FLP++ + +N  I    G L+       D +    ++SS  D VSK  T   
Sbjct: 129 SGVPRMSCFLPKDQVDDNPNI----GSLIAFTPYVSDPSN---FVSSTSDRVSKVTTRLD 181

Query: 184 ------KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 237
                 K    ++ D ++PG  ++  +   + + ++  F  YF           + P ++
Sbjct: 182 PTLSVLKSNSRVNFDCILPGTCLNASIVKKVTSVLVAEFSDYFI----------SVPRSH 231

Query: 238 W---KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---------VGDI 285
           +   K DY     V   I+FVDP+++ +  +L P+L++    PS +K         VG  
Sbjct: 232 YDGCKEDYQIGANVVVCIIFVDPSAKQLTGSLLPHLVN--PIPSILKISELLFRCPVGTR 289

Query: 286 YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRIL 343
           +  S V RV++   +L+ +P T  S      +  + + E +  E  K    GS +  RI+
Sbjct: 290 FSGSLVERVNKR-AVLVKLPKTNGSK----AVIRIHKTETKNNENFKSLAVGSKLTCRII 344

Query: 344 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 403
           G   LE +A   +          + +++KPG  V   V      G +V   G +  L P 
Sbjct: 345 GHDFLENVAVATINKKLLTVPFLSLNELKPGYKVLATVKRYSKTGIVVHIEGRLHGLIPY 404

Query: 404 PHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSS---YAE- 457
            H ++  + +  +KFK G ++   VL +   + ++ +T K  LV S+  +  S   Y   
Sbjct: 405 LHTTDINLKEYKEKFKAGEKVSCIVLQLDECANKLILTAKPGLVNSEFPVFGSREMYTAL 464

Query: 458 ---ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 514
               TDRL+  G++ K+ + G  +   + V+G+ P+ E GL       + ++ GQV+K +
Sbjct: 465 EKGNTDRLLVIGFVVKVSEKGLLISGLDNVRGWIPKRETGLADEDILQTNFYRGQVLKMK 524

Query: 515 IM---------------SSIPASRRINLSFMMKPTRVSED---DLVKLGSLVSGVVDVVT 556
                             SI +    +L F  K  + S+    D V +G   S  V+ V 
Sbjct: 525 FKREINISPTNQMEGDNQSIRSKYMFSLKFHSKKVKSSQSIFLDSVHIGQRFSATVNRVE 584

Query: 557 PNAVVVYVIAKGYSKGTIPT---------EHLADHLEHATVM---KSVIKPGYEFD---- 600
              + V + A   S  T+ +           L+D+  +  ++      +K G   D    
Sbjct: 585 DTGISVNLYATKDSNNTMTSVLGTGFLSFSQLSDYESNQQLLCRYTKNMKSGSTLDWNNS 644

Query: 601 --QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIET-- 650
             +++V+D     +++SA+ +LI +A     DAS+      +  ++ + G++    E   
Sbjct: 645 AREVVVIDKGKQTVIVSARPTLIWAAGNPKIDASNDVNMVDLQTSTTMPGFLRTFDELQI 704

Query: 651 --------------GCFVRFLGRLTGFAPRSKAVDGQ---RADLSKTYYVGQSVRSNILD 693
                         G FVRF   + G AP+    D +     + ++ + VG +V + I++
Sbjct: 705 GGQWFAWVSHHKDYGVFVRFPAGIYGLAPKHLLSDFRAPSNTNWAELFPVGATVIAKIVE 764

Query: 694 VNSETGRITLSLK 706
           V  E      SL+
Sbjct: 765 VTPEKRHCLASLR 777



 Score = 47.4 bits (111), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 109/281 (38%), Gaps = 69/281 (24%)

Query: 1522 KEKEEREQEIRAA-------EERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFML 1572
            KE   R+ E+R A       E++ L K    P+T +EFE  VR+ P++   WI YM  +L
Sbjct: 1553 KEWRLRDMEMRKAILAALTSEQQYLPKGQLHPQTTEEFELAVRNMPSNEACWIAYMTHLL 1612

Query: 1573 S------------MADVEKARSIAERALQTINIREENEKL----NIWVAYFNLENEYGNP 1616
            S               V +AR+IAER L+ I+    N  L    ++ ++Y  +E +    
Sbjct: 1613 SGKIGQQTNNSGLNKGVIEARAIAERGLRAISNSASNNLLVKQSSLLISYLIMEAK---- 1668

Query: 1617 PEEAVVKVFQRALQY-----------------CDPKKVHLALLGL-------YERTEQNK 1652
             E   +   Q+  QY                    K+V   L  L       + R   + 
Sbjct: 1669 -ELERLTCLQKQQQYHLSSSSISVSDLVMEINNQSKRVSQLLTQLLNLDQAPFIRRAIDT 1727

Query: 1653 LAD--------ELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHI 1704
            L+D        EL  + IK        WL  ++   +          QR   SL +    
Sbjct: 1728 LSDIGHHTRAEELARRQIKSHPVDVDHWLSLIKARFRAGNVEAAREAQRNAASLLKS--- 1784

Query: 1705 KFISQTAI----LEFKNGVADRGRSMFEGILSEYPKRTDLW 1741
              + Q AI    +EF  G  DRG  + +  L+ +PKR  L+
Sbjct: 1785 SILPQLAIGVARIEFDYGDIDRGIRLLQEQLTIHPKRKLLY 1825


>gi|302824300|ref|XP_002993794.1| hypothetical protein SELMODRAFT_431822 [Selaginella moellendorffii]
 gi|300138357|gb|EFJ05128.1| hypothetical protein SELMODRAFT_431822 [Selaginella moellendorffii]
          Length = 433

 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 142/221 (64%), Gaps = 19/221 (8%)

Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1318
            G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK++ GR+LS+EPLS  +
Sbjct: 218  GFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVILGRILSIEPLSGHI 277

Query: 1319 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV------GLC 1372
            E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++        LC
Sbjct: 278  EMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGCLC 332

Query: 1373 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1432
            HVS +S D + ++ T+Y+ G+ V+VKILKVD E +RISLGMK+SY     +++++  E  
Sbjct: 333  HVSGVSYDFIQDLSTLYKVGQCVQVKILKVDAETKRISLGMKASYLT--PEDIELMEE-- 388

Query: 1433 SDEAIEEVGSYNRSSLLENSSVAVQD-MDMESEDGGSLVLA 1472
              EAI E  S N + L++N     +D +D+ S+    L ++
Sbjct: 389  --EAINEEPS-NTNVLMDNDEREEEDYLDLASKRFPQLCMS 426



 Score = 98.2 bits (243), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 149/350 (42%), Gaps = 84/350 (24%)

Query: 1012 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            +LS++PS L  ++    ++  E  V+I Q V  YV +V + WA L +S HLK  LFILD+
Sbjct: 75   DLSLRPSELAGNDAACSVITFE-TVTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDT 133

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG---------------- 1115
            + +PSEL+ F+ RF +G     H+ S+N E+K + L L+   DG                
Sbjct: 134  SDDPSELERFKERFKVGDPFQCHIRSVNHERKQVDLSLQKQADGSHEFLLVLADILCKAD 193

Query: 1116 --ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1173
              +S+   D   D+  +   EG    G +  +     G  V + P L  R+    L N  
Sbjct: 194  GKVSENFNDTWIDDPASLFTEGQF--GFVKNVTE--KGCFVVLAPSLEARIQLKNLSNSF 249

Query: 1174 VSDPLSGYDEGQ--------FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1225
            V +P   +  G+         +PLSG                      H+E+SL      
Sbjct: 250  VQNPAEMFPPGKVILGRILSIEPLSG----------------------HIEMSL------ 281

Query: 1226 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL-- 1283
             ++T S D S             +      IV G + N+ + G FI L+   ++ V L  
Sbjct: 282  -TATTSQDSS-----------GWKKFGAGEIVSGRIHNIEAFGIFISLA---ESDVFLVC 326

Query: 1284 --------SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
                    S +S  +++     + +G+ V  ++L V+  +KR+ + +K S
Sbjct: 327  APGCLCHVSGVSYDFIQDLSTLYKVGQCVQVKILKVDAETKRISLGMKAS 376



 Score = 42.7 bits (99), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query: 676 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 726
           DLS  Y VGQ V+  IL V++ET RI+L +K S  +  D   M+E  + EE
Sbjct: 344 DLSTLYKVGQCVQVKILKVDAETKRISLGMKASYLTPEDIELMEEEAINEE 394


>gi|389612595|dbj|BAM19726.1| pre-rRNA processing protein rrp5, partial [Papilio xuthus]
          Length = 233

 Score =  152 bits (385), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/240 (33%), Positives = 145/240 (60%), Gaps = 13/240 (5%)

Query: 1568 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1627
            MAF L   ++EKAR +  RAL+TI+ REE EKLN+W+A  NLE+ +G   +E+  K  + 
Sbjct: 1    MAFHLQATEIEKARGVGRRALRTISFREEQEKLNVWLALLNLEHRFGT--KESQQKTLEE 58

Query: 1628 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR------RVQRLLK 1681
            ALQ  +  ++H  LL +Y  T +   A  L   M++K++   + ++       ++  L K
Sbjct: 59   ALQMNEKYQIHSKLLDIYVETGKASEAGALAELMLRKYRRQLQAYIDAGNACYQLGLLDK 118

Query: 1682 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1741
             +Q     ++Q+ L +L + +H+  + + A LE   G A+R  ++ E +++ YP+R D+ 
Sbjct: 119  ARQ-----IMQKGLTALEKREHVSLLVRFAQLERGCGEAERAGALLEHVVAAYPQRVDVT 173

Query: 1742 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1801
            S+Y+D  ++  D++ +R L ER  S  LP +KMK LFKK++E E+ +G +++++ +K++A
Sbjct: 174  SLYVDMLLKSNDIERVRQLMERMTSQKLPARKMKVLFKKWIEVEEKIGNQQQVDNIKKRA 233


>gi|355709767|gb|AES03702.1| programmed cell death 11 [Mustela putorius furo]
          Length = 398

 Score =  149 bits (377), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/298 (33%), Positives = 152/298 (51%), Gaps = 21/298 (7%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
           +++  GM++ G V EVNE +LVI LP GLRG  +  +  D      NE  A E+ +    
Sbjct: 81  ESLCEGMRILGCVKEVNELELVISLPNGLRGFVQVTEICDAYTKKLNEQVAQEEPVKDLV 140

Query: 58  -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
            LP +F  G LV C+V  +   ++  GK+ + LSL    + + LS E ++ GM+LT  V 
Sbjct: 141 GLPELFSPGMLVRCVVSSVGITER--GKKSVKLSLNPRNVNEVLSAEALKPGMLLTGTVS 198

Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
           S+EDHGY++  G+     FLP     E     N G  +K G  L  ++  +     VV L
Sbjct: 199 SLEDHGYVVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLHCIIEEVKGNGGVVGL 258

Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
           S     VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL++FTG VD  HL  
Sbjct: 259 SIGHSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLSFFTGLVDFMHLDP 318

Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRAPPSHVKVGDIYD 287
               T + N     + V A +L V P +RAV L+L P  L      P S   +G + D
Sbjct: 319 KKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRPVFLQPGRSLPRSCQHLGAVLD 371


>gi|360043001|emb|CCD78412.1| putative programmed cell death protein 11 (pre-rRNA processing
           protein rrp5) [Schistosoma mansoni]
          Length = 1880

 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 180/781 (23%), Positives = 325/781 (41%), Gaps = 103/781 (13%)

Query: 14  GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE-----DNL--LPTIFHVGQ 66
           GV+  V +  L + LP G  G     D  D   +   E+ E     D+L  L  +F VGQ
Sbjct: 9   GVIKSVQKLYLEVQLPHGFLGRVNIYDVSDKYTELLRESAESGIIQDDLVELSDMFKVGQ 68

Query: 67  LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 126
            V C + + D+ +     ++  +SL   ++ K +  + V+  MV    V S+EDHGYI+ 
Sbjct: 69  TVRCFIKEADNSRGSGSTKRYIVSLNPKMVNKAVISKNVKPHMVFVGSVVSVEDHGYIVD 128

Query: 127 FGLPSFTGFLPRN----NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 182
            G+     FLP++    NL   S I   P +    V  S   +++V+ +++  D+    +
Sbjct: 129 PGVARMNCFLPKDQVDVNLDIGSLIPFTPHVSDPLVNSS---SKRVLKVTTRLDSTLSVL 185

Query: 183 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 242
           + D + ++ D ++PG  +   +   + + ++  F  YF       ++ N       K DY
Sbjct: 186 SPDSR-VNFDCMLPGTCLHASIVKKVTSTLVAEFSEYFVSISRTHYIGN-------KEDY 237

Query: 243 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP--------SHVKVGDIYDQSKVVRV 294
               KV   I+ VDP+++ +  +L P+L+ N  P         S   VG  +  S V RV
Sbjct: 238 QIGAKVFVCIILVDPSTKQLTGSLLPHLV-NPIPSVLNISEMLSKCPVGTRFSGSLVERV 296

Query: 295 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 354
           ++   +L+ +P T     A + I     +      K    GS +  RI     LE +A  
Sbjct: 297 NKR-AVLVKLPKTN-GLKAVIRIPKTGTKNNENF-KSLVVGSKLTCRITDHDFLENVAVA 353

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
                       +  ++KPG  V   V      G +V   G +  L P  H ++  +   
Sbjct: 354 TTNKKLLSLPFLSLHELKPGNKVSATVKRYSKTGIVVHLEGRIHGLIPYLHTTDINLKDH 413

Query: 415 GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT-------DRLITH 465
            +KFK G ++   VL +   + ++ +T K  L+ ++L I  S+   +       ++L+  
Sbjct: 414 REKFKAGEKVSCLVLQLDECANKLILTAKPGLLNAELPIFGSHEMYSALKNGNNNQLLIV 473

Query: 466 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR- 524
           G+I K+ + G  +   + ++G+ PR E GL       + ++ GQV+K +    I  S   
Sbjct: 474 GFIVKVSEKGLLISGLDNIRGWIPRRETGLADEDILQTNFYRGQVLKMKFKREINISSEN 533

Query: 525 --------------INLSFMMKPTRVSED---DLVKLGSLVSGVVDVVTPNAVVVYVIAK 567
                         ++L F  K T+  +    + V++G L    V+ V    + + +  K
Sbjct: 534 EVEKDSRNIRSKYMLSLKFHSKKTKNMQSIFLNSVQIGQLFRATVNQVQDTGISLNLYDK 593

Query: 568 GYSKGTIPT--------EHLADHLEHATVMKSV---IKPGYEFD------QLLVLDNESS 610
             +    P           L+D+  +  ++      IKPG   D       ++V+D    
Sbjct: 594 NINDTVTPVLGTGFLSFSQLSDYESNQQLLSRYIKNIKPGSTLDWNHSARNVVVIDKGKQ 653

Query: 611 NLLLSAKYSLINSAQQLP-----------SDASHIHP-----------NSVVHGYVCNII 648
            ++LSA+ +L+ +A  L            S+AS   P            S    +V +  
Sbjct: 654 TVILSARPTLVQAASDLKTNINIDVDMVDSEASDKRPGFLRTFDELQVGSQWFAWVSHHK 713

Query: 649 ETGCFVRFLGRLTGFAPRSKAVDGQ---RADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
           + G FV F   + G AP+    D +     + ++ + VG +V + I++V  E     +SL
Sbjct: 714 DYGVFVHFPAGIYGLAPKHLLSDFRTQSNTNWTELFPVGATVITKIVEVTPEKCHCLISL 773

Query: 706 K 706
           K
Sbjct: 774 K 774



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 24/121 (19%)

Query: 1499 SQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAA-------EERLLEKDA--PRTPDE 1549
            S N  H D  +   E  +     KE   RE E+R A       E++ L K    P+T +E
Sbjct: 1545 SNNDEHLDIER---EDKSESQAAKEWRLREMEMRKAMLAELTTEQQCLPKGQLHPQTTEE 1601

Query: 1550 FERLVRSSPNSSFVWIKYMAFMLS------------MADVEKARSIAERALQTINIREEN 1597
            FE  VR+ P++ F WI YM  +LS               V  AR+I ER L+ I+    N
Sbjct: 1602 FELAVRNMPSNEFCWIAYMTHILSNKVDHQSVSSSLNKGVIDARAIVERGLRAISNSTSN 1661

Query: 1598 E 1598
            +
Sbjct: 1662 Q 1662


>gi|302776682|ref|XP_002971492.1| hypothetical protein SELMODRAFT_412239 [Selaginella moellendorffii]
 gi|300160624|gb|EFJ27241.1| hypothetical protein SELMODRAFT_412239 [Selaginella moellendorffii]
          Length = 883

 Score =  149 bits (376), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 140/225 (62%), Gaps = 18/225 (8%)

Query: 1260 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1319
            +VKNV  KGCF++L+  L+A++ L NL + +V++P + FP GK++ GR+LS+EPLS  +E
Sbjct: 174  FVKNVMEKGCFVVLAPSLEARIQLKNLLNSFVQNPAEMFPPGKVILGRILSIEPLSGHIE 233

Query: 1320 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV------GLCH 1373
            ++L  + S+ +S            G+IV G+I  +E++G+FI++  +++        LCH
Sbjct: 234  MSLAATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGCLCH 288

Query: 1374 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1433
            VSE+S D + ++ T+Y+ G+  +VKILKVD E +RISLGMK+SY   + D +    E   
Sbjct: 289  VSEVSYDFIQDLSTLYKVGQWAQVKILKVDVETKRISLGMKASYLTPE-DGI----EPME 343

Query: 1434 DEAIEEVGSYNRSSLLENSSVAVQD-MDMESEDGGSLVLAQIESR 1477
            +EAI E  S N + L++N     +D +D+ S+    L +  + ++
Sbjct: 344  EEAINEEPS-NTNVLMDNDEREEEDYLDLASKRFPQLCINPLSTK 387


>gi|118374077|ref|XP_001020230.1| S1 RNA binding domain containing protein [Tetrahymena thermophila]
 gi|89301997|gb|EAR99985.1| S1 RNA binding domain containing protein [Tetrahymena thermophila
            SB210]
          Length = 2060

 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 332/1533 (21%), Positives = 612/1533 (39%), Gaps = 254/1533 (16%)

Query: 7    SAGMKLWGVVAEV--NEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHV 64
            S G ++   V+E   N + +V+ L    +     ADA +        + E+N L  I+  
Sbjct: 151  SPGTQVLTAVSEYGSNGQYMVVNLSRNKKAFVTVADATEA-------SKEENDL-RIYDQ 202

Query: 65   GQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
            G+ L+  IV         I +  + +S++ S +  GL +  +   M+L   V S EDHG 
Sbjct: 203  GEYLIGEIV-------PSIKEGNMNVSIKTSKVNSGLQISDIHLNMILPGLVSSKEDHGA 255

Query: 124  ILHF-GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD-PDTVSKC 181
             + F G   + GFL ++    N+  D++ G +    V   +  +++V+LS    D   K 
Sbjct: 256  KIEFNGGEKYFGFLSKD--EANNFEDLEEGRVYMFRVIKKEEKKRLVHLSQKVSDQEGKF 313

Query: 182  VTK---DLK-GISIDLLV-PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 236
            V     D++ G  +  L  PG +V+  +  +L NG+++ FL  F G +   HL       
Sbjct: 314  VVSGEVDIEDGADLHHLAKPGNLVNAVILKVLNNGLIVRFLKQFIGFIFEDHLDKEISA- 372

Query: 237  NWKNDYNQHKKVNARILFVDPTSRAVGLT-------LNPYLLHNRAPPSHVKVGDIYDQS 289
                 Y + +K+ ARI+  D   + + L+       L PY        + +  GD+    
Sbjct: 373  -----YKEKEKLLARIIASDFDQKQINLSVKKAHIDLKPY------EDNSIVTGDVLTDG 421

Query: 290  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR--VRILGFRH 347
             VV      G     P+      +++  + + +EE+       KEG      ++I    +
Sbjct: 422  FVVTKALYGGSYFVKPNNSNIQQSFLHKAHIEKEEL-------KEGQTYTDAIKIKEINY 474

Query: 348  LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 407
             E +     K    +  V   +D++PGM +  K+  +   GA  Q+   V     +  + 
Sbjct: 475  FEQIPIITAKGELVK-RVTNWNDLRPGMQLSAKIDKIIQ-GANNQYKLKVAVNDKMIGLV 532

Query: 408  EF----EIVKPG---KKFKVGAELVFRVLGVK--SKRITVTHKKTLVK---SKLAILSSY 455
            +F    +I K G   K  K G ++  R++ V    K +  T K  L+     K+    S 
Sbjct: 533  DFYNTADIPKAGPVPKNLKEGRKIKVRIMSVNPSDKTLRFTIKPALLNEEDDKILKNISN 592

Query: 456  AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 515
            A+  D  +  G+I++  ++G  V+F+  V G     ++    G      Y VGQV++  I
Sbjct: 593  AQVGDSYL--GFISRKTEYGYIVQFFGDVIGLLTFKDIEEING-HSRDEYKVGQVIRVYI 649

Query: 516  MSSIPASRRINLSF------MMKPTRVSED--------------DLVKLGSLVSGVVDVV 555
                    +I LS        ++  ++S++              ++  +   V  V++ +
Sbjct: 650  AFVNAEQGKIGLSISEKGVSQLQKQKLSQNTSRKTLFEFQAINENVENISHNVGDVLEYI 709

Query: 556  TPNAVVVYVIAKGYSK---GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE---- 608
              N   +  +   Y K     I  EHL+D   H   +    +        + +  +    
Sbjct: 710  VENNQALQDVLTLYHKEHRAIIAIEHLSDFRNHYQSLNQYYRTLPNKGNQVTIKCKIIHI 769

Query: 609  --SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
              + N+++SAK S++++    P+    +  N++   Y+      G  V+F  R+  F   
Sbjct: 770  MPNKNVIVSAKPSILSNMN--PNSLESVKANNIYTAYIDRGARKGVLVKFNERVKFF--- 824

Query: 667  SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL-------KQSCCSSTDASFMQ 719
               +  +  D    +    SV   +   N E  +IT SL       KQ+  +S    F+ 
Sbjct: 825  ---IGKENLDEHAAFQTYDSVL--VFVKNVEGDKITASLQNEAVFKKQAHINSQFNRFI- 878

Query: 720  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
            E+F  E    ML      G   K    + +G+ +   +    +FG+VV   + S + G I
Sbjct: 879  EYFNDE---YMLNKKFTQGEHKKTWNKYRVGNYVNTTIELVKEFGIVVKVND-SPLTGLI 934

Query: 780  THHQLAG--ATVESGSVIQAAILDVAKAERLVDL---------SLKTVF------IDRFR 822
             +  +A   +T+  G  +   I D+   +++VD+          L T+       +D+F 
Sbjct: 935  MNEHVANTRSTLAEGQTLLCRITDIDFEKQMVDVIPSPIDDNTKLTTLLQSNNFNLDKFL 994

Query: 823  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 882
            E  +N                   +T++A V   K  Y++  + +      Y +++++N 
Sbjct: 995  ELENN-------------------ETIDATVICQKGEYIICQITKAPKVFCYVNMTNFNN 1035

Query: 883  ---------QKFPQKQFLNGQSVIATVMALPSSSTAGR---LLLLLKAISETETSSSKRA 930
                     QK    + +N + +  T     S++ A R   + L  + +++    ++   
Sbjct: 1036 LEHEEMLFGQKIKNLKCVNKEILQKTHKNAQSTNMALRSNYIPLFEQQVNQQNKGTAIEE 1095

Query: 931  KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 990
            K   +   G  V  ++ +     + ++     +G++H ++  D +       F++FK GQ
Sbjct: 1096 KSGITLKPGIKVVGKVLKTVGFNVFVQLKGKLYGKLHKSQCQDAEQ------FASFKEGQ 1149

Query: 991  TVTARIIAKSNKPDMKKSFLWELSIK-----PSMLTVSEIGSKLLFEECDVSIGQRVTGY 1045
             +  +I+    K D  KS   +L+ K      ++L  SE+ S  +    +  +GQ   G 
Sbjct: 1150 QIDCKILYL--KKD--KSLQIDLTTKQAHMNSTLLEESEVLSMSIDNFRENCVGQIHRGV 1205

Query: 1046 VYKVDNE-----WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN- 1099
            V   D       +  L+   H     F LD+     +L + ++++  G  V   ++S++ 
Sbjct: 1206 VKSTDPSSIHPVYIELSNYHHGYFSAFDLDA----EDLNQIKKKYKKGSIVECRIVSLSS 1261

Query: 1100 -KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
             KE  L  + L P        + D S +   + I  GD+V  +I K      G  VQI  
Sbjct: 1262 SKENDLKHIQLSP-----KLLSADESAEKKDS-IKVGDLVTAKIVK--KNNNGFRVQISD 1313

Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
            +L+G V  TE   IC        DE   +  S      FVK +V+          H  LS
Sbjct: 1314 NLFGNVDITE---IC--------DEWIANASSSIQINSFVKARVI-----AEEGDHKYLS 1357

Query: 1219 LRSSLDGM-----------SSTNSSDLSTDVDTPGKHLEKIEDLSPN-----MIVQGYVK 1262
            LRSS+              ++ N     +D +  G    +I  L P      M+  GY+ 
Sbjct: 1358 LRSSVTNEQNWKNSLGPNGTTINYKKYFSDSEKIGDLRNRIIKLGPGSIKVGMVFVGYIN 1417

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
                KGCFI + +    +  L+ LSD ++  P+  F   KLV GR++ ++   K +E +L
Sbjct: 1418 QTNDKGCFIKIGQDTVVRASLNELSDEHIAKPQTHFYQNKLVVGRIIQIKEDGK-IEASL 1476

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            + S  +     +    S L VG  V G +      G +    + ++ G    + L +D  
Sbjct: 1477 RESVIKYGYSMDD---SKLQVGATVYGTV-----VGHYQGRASVSIRGCKFRASLDKDDT 1528

Query: 1383 D--------NIETIYRAGEKVKVKILKVDKEKR 1407
            D         +E +   G  VK K++K +KE +
Sbjct: 1529 DFTDEEKMGYVEKLLPIGSAVKAKVIKYEKEPK 1561


>gi|221508178|gb|EEE33765.1| programmed cell death protein, putative [Toxoplasma gondii VEG]
          Length = 395

 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 114/181 (62%), Gaps = 6/181 (3%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            PR+P++FERLV  + NS+ VWI YMA+ L + +++ AR IAERA+Q IN REE E+ ++W
Sbjct: 219  PRSPEDFERLVLVNGNSAAVWISYMAYYLKLNELQLARQIAERAVQHINYREEQERSSVW 278

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
            +AY NLE  YG+     V  VF+RA+QY D KK+H  +  +YE+  Q   A ++  K  +
Sbjct: 279  IAYLNLECVYGD----RVDDVFRRAIQYNDSKKIHYQMTFIYEKARQLDKARQMCEKCCE 334

Query: 1664 KFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1721
            KF  S K+W+R +  L          + ++ +AL  LPR KHI+F++  A LE+K+   +
Sbjct: 335  KFPESQKMWVRHLTLLYTALDAASAARDLMLQALFRLPRRKHIEFVATCARLEYKHASKE 394

Query: 1722 R 1722
            R
Sbjct: 395  R 395


>gi|323453800|gb|EGB09671.1| hypothetical protein AURANDRAFT_5211, partial [Aureococcus
            anophagefferens]
          Length = 277

 Score =  147 bits (371), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 87/276 (31%), Positives = 148/276 (53%), Gaps = 12/276 (4%)

Query: 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1603
            PRT +++ERL+ +  N++  WI Y   +++ +D   AR + ERAL+ I  REE ++L  W
Sbjct: 1    PRTAEDYERLLVTEWNAAATWIAYAKLLVTESDATGARGVLERALKKIGYREEAQRLEAW 60

Query: 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663
             A    E ++G+   +++     RA +  DP +V L L  L+E T     AD    +  K
Sbjct: 61   AALLAHERDHGDA--KSLSAAVDRATKNADPTRVLLKLAALHEETSNYDAADAAYARAEK 118

Query: 1664 KFKHSC----KVWLRRVQ-RLLKQQQEGVQAVVQRALLSL----PRHKHIKFISQTAILE 1714
            + +        VWL   + RLL    +  +AV+ RA+ +     P+ +    +++ A LE
Sbjct: 119  RSRRQGATPDDVWLAHCRSRLLAGAADDARAVLDRAVQACADGGPKAE-ASLLAKFACLE 177

Query: 1715 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1774
               G ADRGR++F+  L+++PKR DLW +Y+ + ++ GDV   R +  R   ++LPPK M
Sbjct: 178  LDVGSADRGRTLFDTTLAKWPKRADLWQLYVAKSLKAGDVAHARAIQMRLAGVNLPPKAM 237

Query: 1775 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1810
            +   K++  +E++ G+    + VK  A  YV+   A
Sbjct: 238  RAALKRFAAFEEAHGDAASADAVKDLARAYVQKQQA 273


>gi|387192690|gb|AFJ68666.1| rrna biogenesis protein rrp5, partial [Nannochloropsis gaditana
           CCMP526]
          Length = 578

 Score =  144 bits (364), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 174/361 (48%), Gaps = 34/361 (9%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-----------LDNEIEANED-- 55
           G  + GVV  V  KD+ + LPGGL G     +  DP            + + +   ED  
Sbjct: 147 GTAVLGVVIRVGPKDVSVALPGGLSGRVPLVEVSDPFFSRFSPSVNGTISDPVSEKEDLI 206

Query: 56  NLLPTIFHVGQLVSCIVLQLDDDKKE----------IGKRKIWLSLRLSLLYKGLSLETV 105
             + T    GQ+V  +V   +   ++             +K+ L+LR S + +GL LE V
Sbjct: 207 KAVSTFLRPGQVVRAVVSSSNAASRKQSAGGAGSGGRASQKVPLTLRASAVNRGLKLEHV 266

Query: 106 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLL----LQGVVRS 161
             G  L   V S+EDHGY++  GL   T FL R ++    G +V+  L+    ++ VV  
Sbjct: 267 LPGGALMGAVASVEDHGYVVSTGLEGVTAFLARKHV--KGGAEVEKALVKGSPVEIVVLD 324

Query: 162 IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
           +    + +    DP  + + +T+    +++  L PGM+V+  + +IL+NG+ L+FL   +
Sbjct: 325 VKEASRAITCGFDPAVLPRALTRG-SALTLAGLKPGMLVNAAIDAILKNGLALTFLGGLS 383

Query: 222 GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 281
           G V + HL   +   +W+  Y     +  R+L VD  S++V LTL  +LL  RAP    +
Sbjct: 384 GVVSLEHLDRPYAENDWRKRYRLGDILQVRVLMVDVKSKSVYLTLRAHLLGMRAPSGLPE 443

Query: 282 VGDIYDQSKVVRVDRGLGLLLD-IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 340
           +G +  ++KV+RVD   GL+L  +P  P S        D  E+E R +E++       RV
Sbjct: 444 LGQVLSEAKVLRVDPTKGLVLGFLP--PESVNGGTKDIDTCEDEGR-IEEELSGRRAKRV 500

Query: 341 R 341
           R
Sbjct: 501 R 501


>gi|302779838|ref|XP_002971694.1| hypothetical protein SELMODRAFT_412227 [Selaginella moellendorffii]
 gi|300160826|gb|EFJ27443.1| hypothetical protein SELMODRAFT_412227 [Selaginella moellendorffii]
          Length = 429

 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 218/492 (44%), Gaps = 127/492 (25%)

Query: 1083 RRFHIGKAVTGHVLSINKEKK------LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1136
            R++ +G+ V   +LS  K  +      +L L LRP +   +D    +     +T I E  
Sbjct: 54   RKYSVGQTVRAKILSKRKTSRKHRNAGILDLSLRPSELAGNDAACSVIT--FETVIIEQS 111

Query: 1137 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP--LSGYDEGQFDPLSGYDE 1194
            ++   + ++      LV  + PHL G +   +  +    DP  L  + E        +  
Sbjct: 112  VIR-YVQEVKDNWAWLV--LSPHLKGCLFILDTSD----DPSELERFKER-------FKV 157

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            G   +C +  ++   +    V+LSL           S +     D  G+ + +       
Sbjct: 158  GDPFQCHIRSVNHERK---QVDLSLHPK-------TSDEQFKKGDLLGRRMTRFFAGRGK 207

Query: 1255 MIVQ--GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            M ++  G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+E
Sbjct: 208  MGLELSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIE 267

Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
            PLS  +E++L  + S+ +S            G+IV                        C
Sbjct: 268  PLSGHIEMSLTATTSQDSS-----GWKKFGAGEIV---------------------SCFC 301

Query: 1373 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1432
            HVSE+S D + ++ T+Y+ G+ V+VKILKVD E +RISLGMK+SY               
Sbjct: 302  HVSEVSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKASY--------------- 346

Query: 1433 SDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQP 1492
                                        +  EDG             + P+E    +E+P
Sbjct: 347  ----------------------------LTPEDG-------------IEPMEEEAINEEP 365

Query: 1493 DMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFE 1551
               N +  N    +E   +D  + R  +   +        AA+E+LL+ D  P T D+FE
Sbjct: 366  SNTN-VLMNNDEREEEDYLDLASKRFPQLCMEA-------AAKEKLLQMDQPPETKDDFE 417

Query: 1552 RLVRSSPNSSFV 1563
            RLV +SPNSS++
Sbjct: 418  RLVAASPNSSYM 429



 Score =  108 bits (270), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 118/240 (49%), Gaps = 40/240 (16%)

Query: 980  ENLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1038
            EN    + +GQTV A+I++K       + + + +LS++PS L  ++    ++  E  V I
Sbjct: 50   ENPLRKYSVGQTVRAKILSKRKTSRKHRNAGILDLSLRPSELAGNDAACSVITFE-TVII 108

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
             Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+ S+
Sbjct: 109  EQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSV 168

Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG-------- 1150
            N E+K + L L P       KT D      + F  +GD++G R+++  +G G        
Sbjct: 169  NHERKQVDLSLHP-------KTSD------EQF-KKGDLLGRRMTRFFAGRGKMGLELSG 214

Query: 1151 --------GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FDPLSGYDE 1194
                    G  V + P L  R+    L N  V +P   +  G+         +PLSG+ E
Sbjct: 215  FVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSGHIE 274


>gi|342321045|gb|EGU12983.1| U3 snoRNP-associated protein Rrp5 [Rhodotorula glutinis ATCC 204091]
          Length = 1507

 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 173/329 (52%), Gaps = 24/329 (7%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPH---LYGRVHFTELKNICVSDPLSGYDE-GQFDPLS 1190
            G +  GR++  LS    LV  +G     L GRV  TEL     SD  S   E G+    +
Sbjct: 854  GALYPGRVTSSLSSGVVLVQLVGSRNASLRGRVALTEL-----SDDYSLVSEKGE----A 904

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
             +  G  V+  VL      R    ++LSLR+S   +S+ +    S   D P   +  ++D
Sbjct: 905  LFPVGTNVQAVVLAKDDEQR---RLDLSLRAS-RVLSAQDKPLASPPADAP---VTSVDD 957

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L P   V+G+VKNV + G F+ L R + A+VL+  L D YV+  +  F +G+LV G++LS
Sbjct: 958  LKPGSKVRGFVKNVANAGVFVELGRDITARVLIKELFDEYVKEWKPRFKVGELVEGKILS 1017

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLS----NLHVGDIVIGQIKRVESYGLFITIENT 1366
            V+ +S ++E++ ++S       S   ++S    NL  G +V G IKRV++YG+FI ++ +
Sbjct: 1018 VDKVSSQIEMSFRSSAVVKKDASAPTSVSLADANLSRGQVVRGTIKRVQNYGVFIRLDES 1077

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
             + GLCH S++ +D   + + + R G+KVK  +L VD EK+++SLG+K+   +      Q
Sbjct: 1078 GVEGLCHKSKIVDDEKRSWKEVVREGQKVKAVVLSVDLEKKKLSLGLKNVDLQAMLAQAQ 1137

Query: 1427 MSSEEESDEAIEEVGSYNRSSLLENSSVA 1455
                +E DE  E       +S L  +  A
Sbjct: 1138 AGGSDEDDEMSEAEAPVASTSKLPATKAA 1166



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 145/584 (24%), Positives = 260/584 (44%), Gaps = 45/584 (7%)

Query: 58  LPTIFHVGQLVSCIVLQL-------------DDDKKEIGKRKIWLSLRLSLLYKGLSLET 104
           LP +FH GQ +  +V                + D+     R++ LS+    + +G++   
Sbjct: 235 LPALFHTGQYLIAVVTSTAVSDPTKPKLAGREGDETVRSSRRVELSVEPEKVNEGIAKGD 294

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 164
           ++ G VL A V  +E+ GY L FGLP  + FLP  +  + +   +  G ++   +  I  
Sbjct: 295 LKRGFVLPAAVHDVEEKGYTLSFGLPPLSAFLPFADAKKLAPKGLHVGQVVVCRLTKIHS 354

Query: 165 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 224
             + V ++ +   ++      +   SI  L+P  +V   V +++  G+ + F  Y+ GT+
Sbjct: 355 NERTVSVAVEWADIASTTLDSVS--SITSLLPLQIVPALVTAVMPQGLNVKFHGYYDGTI 412

Query: 225 DIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYLLHNRAPPSHVK- 281
           D FHL  +    +    Y + +KV  RIL+  +  T +   L++   ++  R   S VK 
Sbjct: 413 DRFHLPIS-AGEDIAQHYKEGQKVKGRILWDSISQTPKKFALSMREEVV--RLDESRVKA 469

Query: 282 ------VGDIYDQSKVVRVDRGLGLLLDI-PSTPVSTPAYVTISDVAEEEVRKLEKK--Y 332
                 VG    Q+K+V VD   GL  +I    PVS  A+V IS + ++ +  + K   +
Sbjct: 470 LQSEWVVGRKC-QAKIVAVDEEWGLTCEIVGDEPVS--AFVHISRITDDHLSTIPKAGPW 526

Query: 333 KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 392
           + G+    R++    L+ L    L+ S          DV+ G  VKG V  +      V 
Sbjct: 527 QIGTVHPARVVSLSPLDSLVQLSLQPSILSQSFLRVQDVRVGEEVKGTVKVLRDNALFVS 586

Query: 393 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLA 450
             G V  +    H ++  +  P KKFK G  +  RV  V  +  R+ +T KK L+++   
Sbjct: 587 IGGSVDGVVWPLHYADIRLKHPEKKFKPGQAVKARVFSVDPEKNRVVLTLKKQLLQTPHP 646

Query: 451 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL--GLDPGCEPSSMYHVG 508
           ++++ +EA   L+T   +TK+      V F+ GV+   P +E         +   M+ +G
Sbjct: 647 LVTTLSEAKPGLVTDATVTKVLDKSVLVDFFGGVRALVPAAEAAEAFTDVADLGRMFPLG 706

Query: 509 QVVKCRIMSSIPASRRINLSFMMKPTRVSED------DLVKLGSLVSGVVDVVTPNAVVV 562
           +VV  RI+S   AS RI  S        +        + + +G+L +G +  +    +V+
Sbjct: 707 KVVAVRILSVDRASGRIVASARQASAPAASTSSSSAIESIDVGTLTTGTISALHETNLVL 766

Query: 563 YVIAKGYSKGTIPTEHLADHLE-HATVMKSVIKPGYEFDQLLVL 605
             +A+G  K  +    LA H       +K  +  G + + L+V+
Sbjct: 767 S-LAEGGIKALLAYPTLARHRGVSVETLKGDLAKGQKLEDLVVV 809



 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 182/831 (21%), Positives = 334/831 (40%), Gaps = 98/831 (11%)

Query: 52   ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 111
            A+   L P   HVGQ+V C + ++  +++ +     W  +  + L    S+ ++    ++
Sbjct: 329  ADAKKLAPKGLHVGQVVVCRLTKIHSNERTVSVAVEWADIASTTLDSVSSITSLLPLQIV 388

Query: 112  TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDV----KPGLLLQGVV--RSIDRT 165
             A V ++   G  + F    + G + R +L  ++G D+    K G  ++G +   SI +T
Sbjct: 389  PALVTAVMPQGLNVKFH-GYYDGTIDRFHLPISAGEDIAQHYKEGQKVKGRILWDSISQT 447

Query: 166  RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN-GVMLSFL--TYFTG 222
             K   LS   + V +     +K +  + +V G     ++ ++ E  G+    +     + 
Sbjct: 448  PKKFALSMREEVV-RLDESRVKALQSEWVV-GRKCQAKIVAVDEEWGLTCEIVGDEPVSA 505

Query: 223  TVDIFHLQNTFPTTNWKNDYNQHKKVN-ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 281
             V I  + +   +T  K    Q   V+ AR++ + P    V L+L P +L      S ++
Sbjct: 506  FVHISRITDDHLSTIPKAGPWQIGTVHPARVVSLSPLDSLVQLSLQPSILSQ----SFLR 561

Query: 282  VGDIYDQSKV---VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 338
            V D+    +V   V+V R   L + I     S    V     A+  ++  EKK+K G  V
Sbjct: 562  VQDVRVGEEVKGTVKVLRDNALFVSIGG---SVDGVVWPLHYADIRLKHPEKKFKPGQAV 618

Query: 339  RVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG 395
            + R+      +      LK    +    LV T S+ KPG+V    V  V     +V F G
Sbjct: 619  KARVFSVDPEKNRVVLTLKKQLLQTPHPLVTTLSEAKPGLVTDATVTKVLDKSVLVDFFG 678

Query: 396  GVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 451
            GV+AL P    +E   ++   G+ F +G  +  R+L V   S RI  + ++    +    
Sbjct: 679  GVRALVPAAEAAEAFTDVADLGRMFPLGKVVAVRILSVDRASGRIVASARQASAPAASTS 738

Query: 452  LSSYAEATD-RLITHGWITKIEKHGCFVRFY-NGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
             SS  E+ D   +T G I+ + +    +     G++       L    G    ++   G 
Sbjct: 739  SSSAIESIDVGTLTTGTISALHETNLVLSLAEGGIKALLAYPTLARHRGVSVETLK--GD 796

Query: 510  VVKCRIMSS-IPASRRINLSFM---MKPTRVSED------------------DLVKLGSL 547
            + K + +   +  S+ ++  F+   + P++ +                    D +++G+L
Sbjct: 797  LAKGQKLEDLVVVSKNVDKGFVIVGLVPSKSAAATAAASSSAASTSQPQLTFDRLEVGAL 856

Query: 548  VSG-VVDVVTPNAVVVYVIAKGYS--KGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 604
              G V   ++   V+V ++    +  +G +    L+D     +     + P     Q +V
Sbjct: 857  YPGRVTSSLSSGVVLVQLVGSRNASLRGRVALTELSDDYSLVSEKGEALFPVGTNVQAVV 916

Query: 605  L--DNESSNLLLSAKYSLINSAQ-----QLPSDA-----SHIHPNSVVHGYVCNIIETGC 652
            L  D+E   L LS + S + SAQ       P+DA       + P S V G+V N+   G 
Sbjct: 917  LAKDDEQRRLDLSLRASRVLSAQDKPLASPPADAPVTSVDDLKPGSKVRGFVKNVANAGV 976

Query: 653  FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
            FV     +T      +  D    +    + VG+ V   IL V+  + +I +S + S    
Sbjct: 977  FVELGRDITARVLIKELFDEYVKEWKPRFKVGELVEGKILSVDKVSSQIEMSFRSSAVVK 1036

Query: 713  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 772
             DAS      L +  ++                    G V+ G +    ++GV +  +E 
Sbjct: 1037 KDASAPTSVSLADANLSR-------------------GQVVRGTIKRVQNYGVFIRLDE- 1076

Query: 773  SDVYGFITHHQLAG-------ATVESGSVIQAAILDVAKAERLVDLSLKTV 816
            S V G     ++           V  G  ++A +L V   ++ + L LK V
Sbjct: 1077 SGVEGLCHKSKIVDDEKRSWKEVVREGQKVKAVVLSVDLEKKKLSLGLKNV 1127



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 187/456 (41%), Gaps = 57/456 (12%)

Query: 941  LVQAEITEIKPLELRLKFGIGFHG---RIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
            +V A +T + P  L +KF   + G   R H+        +  E++  ++K GQ V  RI+
Sbjct: 387  IVPALVTAVMPQGLNVKFHGYYDGTIDRFHLP------ISAGEDIAQHYKEGQKVKGRIL 440

Query: 998  AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1057
              S     KK   + LS++  ++ + E   K L  E    +G++    +  VD EW L  
Sbjct: 441  WDSISQTPKK---FALSMREEVVRLDESRVKALQSEW--VVGRKCQAKIVAVDEEWGLTC 495

Query: 1058 -ISRHLKAQLFILDSAYEPSELQEFQRR--FHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1114
             I        F+  S      L    +   + IG      V+S++    L++L L+P   
Sbjct: 496  EIVGDEPVSAFVHISRITDDHLSTIPKAGPWQIGTVHPARVVSLSPLDSLVQLSLQP--S 553

Query: 1115 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1174
             +S   + + +      +  G+ V G + K+L     L V IG  + G V      +I +
Sbjct: 554  ILSQSFLRVQD------VRVGEEVKGTV-KVLRD-NALFVSIGGSVDGVVWPLHYADIRL 605

Query: 1175 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1234
              P     E +F P      GQ VK +V  +         V L+L+  L           
Sbjct: 606  KHP-----EKKFKP------GQAVKARVFSVDPEKN---RVVLTLKKQL----------- 640

Query: 1235 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1294
               + TP   +  + +  P ++    V  V  K   +     + A V  +  ++ + +  
Sbjct: 641  ---LQTPHPLVTTLSEAKPGLVTDATVTKVLDKSVLVDFFGGVRALVPAAEAAEAFTDVA 697

Query: 1295 E--KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1352
            +  + FP+GK+VA R+LSV+  S R+  + + + +  AS S  + + ++ VG +  G I 
Sbjct: 698  DLGRMFPLGKVVAVRILSVDRASGRIVASARQASAPAASTSSSSAIESIDVGTLTTGTIS 757

Query: 1353 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
             +    L +++    +  L     L+     ++ET+
Sbjct: 758  ALHETNLVLSLAEGGIKALLAYPTLARHRGVSVETL 793



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 18/193 (9%)

Query: 962  FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP-----DMKKSFLWELSIK 1016
              GR+ +TE++DD S V E   + F +G  V A ++AK ++       ++ S +     K
Sbjct: 882  LRGRVALTELSDDYSLVSEKGEALFPVGTNVQAVVLAKDDEQRRLDLSLRASRVLSAQDK 941

Query: 1017 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1076
            P     S      +    D+  G +V G+V  V N    + + R + A++ I +   E  
Sbjct: 942  P---LASPPADAPVTSVDDLKPGSKVRGFVKNVANAGVFVELGRDITARVLIKELFDE-- 996

Query: 1077 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF----QDGISDKTVDISNDNMQTFI 1132
             ++E++ RF +G+ V G +LS++K    + +  R      +D  +  +V +++ N+    
Sbjct: 997  YVKEWKPRFKVGELVEGKILSVDKVSSQIEMSFRSSAVVKKDASAPTSVSLADANLS--- 1053

Query: 1133 HEGDIVGGRISKI 1145
              G +V G I ++
Sbjct: 1054 -RGQVVRGTIKRV 1065



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            +++D+     V+G VK +     F+ +   +D  V   + +D  ++ PEK+F  G+ V  
Sbjct: 561  RVQDVRVGEEVKGTVKVLRDNALFVSIGGSVDGVVWPLHYADIRLKHPEKKFKPGQAVKA 620

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            RV SV+P   RV +TLK    +T     +  LS    G +    + +V    + +     
Sbjct: 621  RVFSVDPEKNRVVLTLKKQLLQT-PHPLVTTLSEAKPGLVTDATVTKVLDKSVLVDFFG- 678

Query: 1367 NLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRI 1409
             +  L   +E +E   D  ++  ++  G+ V V+IL VD+   RI
Sbjct: 679  GVRALVPAAEAAEAFTDVADLGRMFPLGKVVAVRILSVDRASGRI 723



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 95/459 (20%), Positives = 184/459 (40%), Gaps = 66/459 (14%)

Query: 14   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 73
              V +V +K +++   GG+R L  AA+A +   D          L  +F +G++V+  +L
Sbjct: 662  ATVTKVLDKSVLVDFFGGVRALVPAAEAAEAFTDVAD-------LGRMFPLGKVVAVRIL 714

Query: 74   QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 133
             +D     I       S   +      ++E++  G + T  + ++ +   +L        
Sbjct: 715  SVDRASGRIVASARQASAPAASTSSSSAIESIDVGTLTTGTISALHETNLVLSLAEGGIK 774

Query: 134  GFLPRNNLAENSGIDVKP--GLLLQG--------VVRSIDRTRKVVYLSSDPDTVSKCVT 183
              L    LA + G+ V+   G L +G        V +++D+   +V L       +    
Sbjct: 775  ALLAYPTLARHRGVSVETLKGDLAKGQKLEDLVVVSKNVDKGFVIVGLVPSKSAAATAAA 834

Query: 184  KDLKG------ISIDLLVPGMMVSTRVQSILENGVMLSFL-----TYFTGTVDIFHLQNT 232
                       ++ D L  G +   RV S L +GV+L  L         G V +  L + 
Sbjct: 835  SSSAASTSQPQLTFDRLEVGALYPGRVTSSLSSGVVLVQLVGSRNASLRGRVALTELSDD 894

Query: 233  FPTTNWKND--YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR------APPSHVKVGD 284
            +   + K +  +     V A +L  D   R + L+L    + +       +PP+   V  
Sbjct: 895  YSLVSEKGEALFPVGTNVQAVVLAKDDEQRRLDLSLRASRVLSAQDKPLASPPADAPVTS 954

Query: 285  IYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVAEEEVRKLEKKYKEGSCV 338
            + D     +V    G + ++ +  V         A V I ++ +E V++ + ++K G  V
Sbjct: 955  VDDLKPGSKVR---GFVKNVANAGVFVELGRDITARVLIKELFDEYVKEWKPRFKVGELV 1011

Query: 339  RVRILGFRHLEG------LATGILK--ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 390
              +IL    +         ++ ++K  ASA   +    +++  G VV+G +  V ++G  
Sbjct: 1012 EGKILSVDKVSSQIEMSFRSSAVVKKDASAPTSVSLADANLSRGQVVRGTIKRVQNYGVF 1071

Query: 391  VQF-PGGVKALCPLPHMSEF---------EIVKPGKKFK 419
            ++    GV+ LC   H S+          E+V+ G+K K
Sbjct: 1072 IRLDESGVEGLC---HKSKIVDDEKRSWKEVVREGQKVK 1107


>gi|313232837|emb|CBY09520.1| unnamed protein product [Oikopleura dioica]
          Length = 734

 Score =  140 bits (354), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 161/305 (52%), Gaps = 15/305 (4%)

Query: 1508 AKTIDEKNNRHAKKKEKE----------EREQEIRAAEERLLEKDAPRTPDEFERLVRSS 1557
            AK ++ ++ +  K KE E          E E + R AE  + +   P     +ER V ++
Sbjct: 416  AKEVERRSKKPQKTKEPEADSGKTLSLEEIEDKAREAEREMEKSKLPEDVSGWERAVITA 475

Query: 1558 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1617
            PN+S +W++Y AF ++  ++EK+R + +RAL+TI+ REE+++LNIW A  NLE  YG+  
Sbjct: 476  PNNSEIWLRYSAFHIASGEIEKSRMVMDRALKTIHFREEDDRLNIWKARLNLEALYGD-- 533

Query: 1618 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW--LRR 1675
            +E++   F  A +  D +KV+ A++G+   + +   A  +L   +KK+    ++W  L R
Sbjct: 534  KESLQSQFNEAKKCNDERKVYHAVIGIQLDSNKYSSAIPILRDAVKKYPEDIELWSKLGR 593

Query: 1676 VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1735
             Q +     E     +QRAL +     H+    + A L+F+ G  + G+++ E +L  + 
Sbjct: 594  CQ-IEDGSPEKATVTLQRALQANKAKTHVMITQKFAKLQFEFGDLENGKTILEQMLKVHA 652

Query: 1736 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1795
            KR D+W +Y D  ++ GD +  R +  R I      +    L K+ +  E+ +G+E+  +
Sbjct: 653  KRADIWGVYGDLLLKFGDGEDARRVLLRGIEGCSKSRGRLHLMKRMINLEERIGDEQSAQ 712

Query: 1796 YVKQK 1800
              + K
Sbjct: 713  EWRTK 717


>gi|313220406|emb|CBY31260.1| unnamed protein product [Oikopleura dioica]
          Length = 699

 Score =  140 bits (353), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 161/305 (52%), Gaps = 15/305 (4%)

Query: 1508 AKTIDEKNNRHAKKKEKE----------EREQEIRAAEERLLEKDAPRTPDEFERLVRSS 1557
            AK ++ ++ +  K KE E          E E + R AE  + +   P     +ER V ++
Sbjct: 381  AKEVERRSKKPQKTKEPEADSGKTLSLEEIEDKAREAEREMEKSKLPEDVSGWERAVITA 440

Query: 1558 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1617
            PN+S +W++Y AF ++  ++EK+R + +RAL+TI+ REE+++LNIW A  NLE  YG+  
Sbjct: 441  PNNSEIWLRYSAFHIASGEIEKSRMVMDRALKTIHFREEDDRLNIWKARLNLEALYGD-- 498

Query: 1618 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW--LRR 1675
            +E++   F  A +  D +KV+ A++G+   + +   A  +L   +KK+    ++W  L R
Sbjct: 499  KESLQSQFNEAKKCNDERKVYHAVIGIQLDSNKYSSAIPILRDAVKKYPEDIELWSKLGR 558

Query: 1676 VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1735
             Q +     E     +QRAL +     H+    + A L+F+ G  + G+++ E +L  + 
Sbjct: 559  CQ-IEDGSPEKATVTLQRALQANKAKTHVMITQKFAKLQFEFGDLENGKTILEQMLKVHA 617

Query: 1736 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1795
            KR D+W +Y D  ++ GD +  R +  R I      +    L K+ +  E+ +G+E+  +
Sbjct: 618  KRADIWGVYGDLLLKFGDGEDARRVLLRGIEGCSKSRGRLHLMKRMINLEERIGDEQSAQ 677

Query: 1796 YVKQK 1800
              + K
Sbjct: 678  EWRTK 682


>gi|256090782|ref|XP_002581360.1| programmed cell death protein [Schistosoma mansoni]
          Length = 769

 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 176/769 (22%), Positives = 321/769 (41%), Gaps = 103/769 (13%)

Query: 14  GVVAEVNEKDLVICLPGGLRGLARAADALDP---ILDNEIEAN--EDNL--LPTIFHVGQ 66
           GV+  V +  L + LP G  G     D  D    +L    E+   +D+L  L  +F VGQ
Sbjct: 9   GVIKSVQKLYLEVQLPHGFLGRVNIYDVSDKYTELLRESAESGIIQDDLVELSDMFKVGQ 68

Query: 67  LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 126
            V C + + D+ +     ++  +SL   ++ K +  + V+  MV    V S+EDHGYI+ 
Sbjct: 69  TVRCFIKEADNSRGSGSTKRYIVSLNPKMVNKAVISKNVKPHMVFVGSVVSVEDHGYIVD 128

Query: 127 FGLPSFTGFLPRN----NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 182
            G+     FLP++    NL   S I   P +    V  S   +++V+ +++  D+    +
Sbjct: 129 PGVARMNCFLPKDQVDVNLDIGSLIPFTPHVSDPLVNSS---SKRVLKVTTRLDSTLSVL 185

Query: 183 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 242
           + D + ++ D ++PG  +   +   + + ++  F  YF       ++ N       K DY
Sbjct: 186 SPDSR-VNFDCMLPGTCLHASIVKKVTSTLVAEFSEYFVSISRTHYIGN-------KEDY 237

Query: 243 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP--------SHVKVGDIYDQSKVVRV 294
               KV   I+ VDP+++ +  +L P+L+ N  P         S   VG  +  S V RV
Sbjct: 238 QIGAKVFVCIILVDPSTKQLTGSLLPHLV-NPIPSVLNISEMLSKCPVGTRFSGSLVERV 296

Query: 295 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 354
           ++   +L+ +P T     A + I     +      K    GS +  RI     LE +A  
Sbjct: 297 NKR-AVLVKLPKTN-GLKAVIRIPKTGTKNNENF-KSLVVGSKLTCRITDHDFLENVAVA 353

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
                       +  ++KPG  V   V      G +V   G +  L P  H ++  +   
Sbjct: 354 TTNKKLLSLPFLSLHELKPGNKVSATVKRYSKTGIVVHLEGRIHGLIPYLHTTDINLKDH 413

Query: 415 GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT-------DRLITH 465
            +KFK G ++   VL +   + ++ +T K  L+ ++L I  S+   +       ++L+  
Sbjct: 414 REKFKAGEKVSCLVLQLDECANKLILTAKPGLLNAELPIFGSHEMYSALKNGNNNQLLIV 473

Query: 466 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR- 524
           G+I K+ + G  +   + ++G+ PR E GL       + ++ GQV+K +    I  S   
Sbjct: 474 GFIVKVSEKGLLISGLDNIRGWIPRRETGLADEDILQTNFYRGQVLKMKFKREINISSEN 533

Query: 525 --------------INLSFMMKPTRVSED---DLVKLGSLVSGVVDVVTPNAVVVYVIAK 567
                         ++L F  K T+  +    + V++G L    V+ V    + + +  K
Sbjct: 534 EVEKDSRNIRSKYMLSLKFHSKKTKNMQSIFLNSVQIGQLFRATVNQVQDTGISLNLYDK 593

Query: 568 GYSKGTIPT--------EHLADHLEHATVMKSV---IKPGYEFD------QLLVLDNESS 610
             +    P           L+D+  +  ++      IKPG   D       ++V+D    
Sbjct: 594 NINDTVTPVLGTGFLSFSQLSDYESNQQLLSRYIKNIKPGSTLDWNHSARNVVVIDKGKQ 653

Query: 611 NLLLSAKYSLINSAQQLP-----------SDASHIHP-----------NSVVHGYVCNII 648
            ++LSA+ +L+ +A  L            S+AS   P            S    +V +  
Sbjct: 654 TVILSARPTLVQAASDLKTNINIDVDMVDSEASDKRPGFLRTFDELQVGSQWFAWVSHHK 713

Query: 649 ETGCFVRFLGRLTGFAPRSKAVDGQ---RADLSKTYYVGQSVRSNILDV 694
           + G FV F   + G AP+    D +     + ++ + VG +V + I++V
Sbjct: 714 DYGVFVHFPAGIYGLAPKHLLSDFRTQSNTNWTELFPVGATVITKIVEV 762


>gi|302786996|ref|XP_002975268.1| hypothetical protein SELMODRAFT_415410 [Selaginella moellendorffii]
 gi|300156842|gb|EFJ23469.1| hypothetical protein SELMODRAFT_415410 [Selaginella moellendorffii]
          Length = 366

 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 154/336 (45%), Gaps = 123/336 (36%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 151  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 210

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
             +E++L  + S+ +S                                       LCHVSE
Sbjct: 211  HIEMSLAATTSQDSS--------------------------------------CLCHVSE 232

Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +S D + ++ T+Y+ G+ V+VKILKVD E +RISL MK+SY                   
Sbjct: 233  VSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLRMKASY------------------- 273

Query: 1437 IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDN 1496
                                    +  EDG             + P+E    +E+P   N
Sbjct: 274  ------------------------LTPEDG-------------IEPMEEEAINEEPSNTN 296

Query: 1497 GISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVR 1555
             +  N    +E   +D  + R  +              EE+LL+KD  P T D+FERLV 
Sbjct: 297  MLMDND-EREEEDYLDLASKRFPQ-----------LCMEEKLLQKDQPPETKDDFERLVA 344

Query: 1556 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1591
            +SPN                +++K R++AERAL+ I
Sbjct: 345  ASPN----------------NLDKVRAVAERALEKI 364



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 46/171 (26%)

Query: 1056 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1115
            L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+ S+N E+K + L   P    
Sbjct: 57   LGMSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSVNHERKQVDLSRHP---- 112

Query: 1116 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG------------------------G 1151
               KT D           +G ++G RI+++ +GVG                        G
Sbjct: 113  ---KTSDEQ-------FKKGGLLGRRITRVFAGVGRHTVQGRWESFGKVHGFVKNVTEKG 162

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FDPLSGYDE 1194
              V + P L  R+    L N  V +P   +  G+         +PLSG+ E
Sbjct: 163  CFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSGHIE 213


>gi|302779850|ref|XP_002971700.1| hypothetical protein SELMODRAFT_412236 [Selaginella moellendorffii]
 gi|300160832|gb|EFJ27449.1| hypothetical protein SELMODRAFT_412236 [Selaginella moellendorffii]
          Length = 479

 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 116/182 (63%), Gaps = 18/182 (9%)

Query: 1237 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1296
            D+  PG+    +E       + G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P +
Sbjct: 197  DLKRPGRGKMGLE-------LSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAE 249

Query: 1297 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1356
             FP GK+++GR+LS+EPLS  +E++L  + S+ +S            G+IV G+I  +E+
Sbjct: 250  MFPSGKVISGRILSIEPLSGHIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEA 304

Query: 1357 YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +G+FI++  +++     +       V N+ T+Y+ G+ V+VKILKVD E +RISLGMK S
Sbjct: 305  FGIFISLAKSDVASSLSIL------VSNLSTLYKVGQWVQVKILKVDAETKRISLGMKVS 358

Query: 1417 YF 1418
            Y 
Sbjct: 359  YL 360



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 165/372 (44%), Gaps = 82/372 (22%)

Query: 981  NLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1039
            +L  N  I +TV A+I++K       + +   +LS++PS L  ++    ++  E  V+I 
Sbjct: 42   SLRGNVHITETVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVITFET-VTIE 100

Query: 1040 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1099
            Q V  YV +V + W  L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+ S+N
Sbjct: 101  QSVIRYVQEVKDNWTWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSVN 160

Query: 1100 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG---------GRISKILSGV- 1149
             E+K + L L P     SDK       ++Q FI+ G +           G++   LSG  
Sbjct: 161  HERKQVDLSLHP---KTSDK--QFKKGDLQ-FIYRGTVRKVLDLKRPGRGKMGLELSGFV 214

Query: 1150 -----GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FDPLSGYDEGQ 1196
                  G  V + P L  R+    L N  V +P   +  G+         +PLSG     
Sbjct: 215  KNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPSGKVISGRILSIEPLSG----- 269

Query: 1197 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1256
                             H+E+SL       ++T S D S             +      I
Sbjct: 270  -----------------HIEMSL-------TATTSQDSSG-----------WKKFGAGEI 294

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDA---KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
            V G + N+ + G FI L++   A    +L+SNLS  Y         +G+ V  ++L V+ 
Sbjct: 295  VSGRIHNIEAFGIFISLAKSDVASSLSILVSNLSTLY--------KVGQWVQVKILKVDA 346

Query: 1314 LSKRVEVTLKTS 1325
             +KR+ + +K S
Sbjct: 347  ETKRISLGMKVS 358



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 200/463 (43%), Gaps = 96/463 (20%)

Query: 1198 VKCKVL---EISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
            V+ K+L   + SR  R    ++LSLR S L G      +D +  V T        E ++ 
Sbjct: 53   VRAKILSKRKTSRKHRNAATLDLSLRPSELAG------NDAACSVIT-------FETVTI 99

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSV 1311
               V  YV+ V     +++LS  L   + + + SD    +E  ++ F +G      + SV
Sbjct: 100  EQSVIRYVQEVKDNWTWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSV 159

Query: 1312 EPLSKRVEVTL--KTSDSRTASQSEINNLSNLHVGDI-----------------VIGQIK 1352
                K+V+++L  KTSD     Q +  +L  ++ G +                 + G +K
Sbjct: 160  NHERKQVDLSLHPKTSDK----QFKKGDLQFIYRGTVRKVLDLKRPGRGKMGLELSGFVK 215

Query: 1353 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1412
             V   G F+ +   +L     +  LS   V N   ++ +G+ +  +IL ++     I + 
Sbjct: 216  NVTEKGCFVVLA-PSLEARIQLKNLSNSFVQNPAEMFPSGKVISGRILSIEPLSGHIEMS 274

Query: 1413 MKSSYFKNDADNLQMSSEEESDEAIEEVGSYN------RSSLLENSSVAVQDMDMESEDG 1466
            + ++  ++ +   +  + E     I  + ++       +S +  + S+ V ++       
Sbjct: 275  LTATTSQDSSGWKKFGAGEIVSGRIHNIEAFGIFISLAKSDVASSLSILVSNLS------ 328

Query: 1467 GSLVLAQIESRASVPPLEVNLDDEQPDMDNGIS---QNQGHTDEAKTIDEKNNRHAKKKE 1523
                L ++     V  L+V+ + ++  +   +S     +    E + I+E+ +      +
Sbjct: 329  ---TLYKVGQWVQVKILKVDAETKRISLGMKVSYLTPEEIEPMEEEAINEEPSNTNVLMD 385

Query: 1524 KEEREQEI---------------RAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKY 1567
             +ERE+E                 AA+E+LL+KD  P T D+FERL              
Sbjct: 386  NDEREEEDYLDLASKRFPQLCMEAAAKEKLLQKDQPPETKDDFERLC------------- 432

Query: 1568 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1610
                  +AD++K R++AERAL+ I  REE EK+NIW+AY NLE
Sbjct: 433  ------LADLDKVRAVAERALENIIYREEMEKMNIWMAYLNLE 469



 Score = 42.4 bits (98), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 24/207 (11%)

Query: 150 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK-DLKGIS-------IDLLVP----- 196
           K G   Q  +RS++  RK V LS  P T  K   K DL+ I        +DL  P     
Sbjct: 147 KVGDPFQCHIRSVNHERKQVDLSLHPKTSDKQFKKGDLQFIYRGTVRKVLDLKRPGRGKM 206

Query: 197 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 256
           G+ +S  V+++ E G  +         + + +L N+F   N    +   K ++ RIL ++
Sbjct: 207 GLELSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSF-VQNPAEMFPSGKVISGRILSIE 265

Query: 257 PTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT 316
           P S  + ++L      + +       G+I   S  +      G+ + +  + V++   + 
Sbjct: 266 PLSGHIEMSLTATTSQDSSGWKKFGAGEIV--SGRIHNIEAFGIFISLAKSDVASSLSIL 323

Query: 317 ISDVAEEEVRKLEKKYKEGSCVRVRIL 343
           +S+        L   YK G  V+V+IL
Sbjct: 324 VSN--------LSTLYKVGQWVQVKIL 342


>gi|357460991|ref|XP_003600777.1| rRNA biogenesis protein RRP5 [Medicago truncatula]
 gi|355489825|gb|AES71028.1| rRNA biogenesis protein RRP5 [Medicago truncatula]
          Length = 180

 Score =  137 bits (344), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 117/180 (65%), Gaps = 15/180 (8%)

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            K+V  RV+SV PLS  VEVTLKTS   ++S+S I++L   HVGD++ G IK VE  GLFI
Sbjct: 4    KVVNNRVISVAPLSNCVEVTLKTSTFSSSSKSVISDLGKFHVGDVISGSIKSVEPSGLFI 63

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
             I+NT +VGLCHVSE+S+ H+DNIE  + AGEKV   +LKVD+E+  ISLGMK SY +  
Sbjct: 64   AIDNTKVVGLCHVSEISDKHIDNIEAKFGAGEKVNAIVLKVDEERHGISLGMKDSYMRGK 123

Query: 1422 ADNLQMSSEEESDEAIEE----VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESR 1477
               LQ+ S+E SDE I +    + S +R S          +MD++SE     +L+Q + R
Sbjct: 124  T-VLQIPSDEGSDEPIADGMKSISSTSRPS----------NMDIDSETDQFPILSQAQIR 172


>gi|389585916|dbj|GAB68646.1| hypothetical protein PCYB_135200 [Plasmodium cynomolgi strain B]
          Length = 435

 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 145/264 (54%), Gaps = 21/264 (7%)

Query: 1546 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1605
            +P ++ERL+ S  N+S +W+ Y+A+ L    +E+AR  AERAL+TI+I +  EK NI+  
Sbjct: 186  SPADYERLLASEKNNSAIWVSYIAYHLEKGSLEEARKTAERALKTIDIHKVEEKRNIFFC 245

Query: 1606 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1665
            Y N+E  YG+  +E    VF+RAL  C+ KKV++  + + +  ++     +L  + IKKF
Sbjct: 246  YINMECSYGDKLKE----VFKRALLSCNEKKVYMHTMNVLKVNKKYNELKQLSEEAIKKF 301

Query: 1666 KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1723
             +S K+W   ++ +    ++   A  ++ ++L  L + KH++ +   A  E+K    +RG
Sbjct: 302  HYSKKIWSHYLEIIHSAFKDEAYAHEILLKSLHCLAKRKHLRMVINAARFEYKYANKERG 361

Query: 1724 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1783
            +S  +G                 +++ L  +  +R +FER  S     + MK +F K+L 
Sbjct: 362  KSETKG---------------EKKKLNLNQLQFVRNIFERFSSCKFKTRVMKMIFTKWLL 406

Query: 1784 YEKSVGEEERIEYVKQKAMEYVES 1807
            +EK+ G     + V++KA +YVES
Sbjct: 407  FEKNHGTVSSQKMVQKKAYDYVES 430


>gi|312075992|ref|XP_003140662.1| hypothetical protein LOAG_05077 [Loa loa]
          Length = 1279

 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 231/962 (24%), Positives = 414/962 (43%), Gaps = 123/962 (12%)

Query: 108  GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRS 161
            G+VL   V+S+ED G I++ GL S    GFL   +L     + S I+ +P LL      S
Sbjct: 152  GLVLNGVVESVEDKGVIINLGLQSVELKGFLAEKHLPPTFQKESLIEGQPLLLRIQNENS 211

Query: 162  IDRTRKVVYLSSDPDTVSKCVTK-DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 220
             ++  +VV LS+ P+   +C+    +K + ++ L+PG ++         +GV ++     
Sbjct: 212  SNKKSRVVSLSAVPEM--ECLDDIAVKNLKLNDLMPGTLLLVNPLQPTASGVYVNIGNDI 269

Query: 221  TGTVDIFHLQNTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NR 274
             G V+  HL        ++ND +   K     ++F    S  + L  +P ++       R
Sbjct: 270  KGYVNRQHL-----PPRYRNDSFKCLKSFKTIVMFCQQNSNLLALNGHPDIIAASKFAKR 324

Query: 275  APPSHVKVGDIYDQSKVVRVDRG----LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
                +V  GDI  + KV  V++       L+L          A+   +++ E+ V     
Sbjct: 325  TNFENVHTGDII-ECKVSNVNKNGDVNFDLVLHGDERNSLVAAFARKTEL-EDHV----- 377

Query: 331  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 390
            +YK+G+  + R+L F+ +E +     +       +    D  PGM V  KV +V   G  
Sbjct: 378  EYKKGTIHQTRVLSFKMVERILIVATRKDILAQKMVCVKDAVPGMKVIAKVESVLPKGLF 437

Query: 391  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSK 448
            V+    +    P  H+S+  I +  K F VG EL  R+L V    +R+ +T+K++L  +K
Sbjct: 438  VKIYNSIPGFIPKIHLSDKLITRIDKHFAVGDELTCRILTVNEAKERLILTNKQSLTTNK 497

Query: 449  LAILSSYAEATDRLITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSM 504
              ++ SYAE T   IT G+I  + +H   G  + FY G +GF  P+    L       + 
Sbjct: 498  DTVIKSYAEVTTNAITTGYI--VSQHPSGGLIIGFYGGTRGFMFPKETERL------GTN 549

Query: 505  YHVGQVVKCRIMSSIPASRRINLSFM-----------MKPTRVSEDDLVKLGSLVSGVV- 552
              VG  V+ R++S  P   R+ ++              +P  +   + V   ++V  ++ 
Sbjct: 550  IKVGLTVRVRVVSVDPQRGRMLVAVANAANDGTEIAKAQPFLIDGGNSVSFSAVVMNILS 609

Query: 553  --DVVTPNAVVVYVIAKGYS-----KGTIPTEHLADHLE--HATVMKSVIKPGYEFDQLL 603
              +   PN ++   +  G       K  IP E L+D L+   A++ +S I  G    ++ 
Sbjct: 610  NDNKSKPNEILNVTVRLGKKLGGKVKAFIPKELLSDCLDLPFASLSES-IALGSVLPKVT 668

Query: 604  VLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNII----ETGCFVRFL 657
            VL + + NL +++K  +I+  ++ P  +   ++    +V G   NII    E G FV   
Sbjct: 669  VLGDVAGNLKVTSKRFMIDWLEKHPRITGLQNLTKGELVCG---NIIRKHKEMGYFVELA 725

Query: 658  GRLTGFAP----RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
            G     AP    R  A+     +L     +GQ+V + +  V+ E  R  L L    C   
Sbjct: 726  GGSALTAPARFIRPMALPVSMQELQ----IGQTVVARVSSVDLERKRFALILDAHLCIPP 781

Query: 714  DAS---FMQE--HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 768
             A    F     H+ LEE +    ++  N S++       IG  I+ KV E ++  VVV 
Sbjct: 782  GAELDYFAPSIVHYSLEE-LNWFIANNPNYSQVPE-----IGECIDIKVVEISECSVVVQ 835

Query: 769  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID-RFREANSN 827
            +  + D+ G   ++      ++ GS  +A +LDV    +L    L    +D   +  N  
Sbjct: 836  YASNPDLKGCAINNT---NILQKGSCAKALVLDV----KLPTCELVLFLLDGGVQHLNEK 888

Query: 828  RQAQKKKRKREASKDLGVHQTVNAIVEIVKE-NYLVLSLPEYNH---SIGYASVSDYNTQ 883
            +       K+E    + +H+   A+  +  E +  V+S+P   H   +I    + + + Q
Sbjct: 889  KLQSLLCSKKEFDAKIWLHKREYAVATVETEKSAFVVSIPMRLHPNVNITSVDLDENSNQ 948

Query: 884  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGS 940
                 + ++G  +I T M +         L+  K  +  +++  K+ K+   Y    +G 
Sbjct: 949  CIITPKLISGNVMIGTAMEILKKYG----LIHRKFKTPIKSAVKKKLKQFKIYTAKVMGM 1004

Query: 941  LVQAEITEIKPLELRLKFGIGFHGRIHITEVN----DDKSNVVENLFSNFKIGQTVTARI 996
              + ++     LEL      G  GR+H +E +    D  S  +++     K G+TV  +I
Sbjct: 1005 WSKGDLYNAIELEL----PDGSIGRLHASEFDESFLDQTSQPIQSFLKKRK-GKTVNVKI 1059

Query: 997  IA 998
            + 
Sbjct: 1060 MC 1061


>gi|61402583|gb|AAH91949.1| Pdcd11 protein [Danio rerio]
          Length = 400

 Score =  133 bits (334), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 171/304 (56%), Gaps = 21/304 (6%)

Query: 1   MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE--D 55
           ++ ++++ G  + G V EV++ ++V+ LP GL G   +    DA   IL+++++ ++  +
Sbjct: 70  LHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAYTNILNDKLDTDDGLE 129

Query: 56  NLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 113
            ++P   +F  G L+ C+V  LD  K+  G   + LS+    + K L+   ++  M L+ 
Sbjct: 130 EVVPLSKLFTPGMLIRCVVSSLDSAKE--GHISLKLSINPKDVNKALNSVALKPAMTLSG 187

Query: 114 YVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 173
            V+S+EDHGY++  G+     FLP+   + +S  D+  G  +  ++  +  + +VV LS 
Sbjct: 188 CVESVEDHGYLVDIGIGGSKAFLPKK--STSSKRDLYVGQYVLVLIEDVKDSGRVVRLSQ 245

Query: 174 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
           +P  + K   +  +G ++D L+PG+++   V+ +  +G++++FL+ FTG VD  HL    
Sbjct: 246 NPQALVKACAETKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLSSFTGVVDFLHLDEDK 305

Query: 234 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR 293
            +T     Y++ +++ ARIL+V P++R VGL+L  +LL    PP    V D++   +V  
Sbjct: 306 EST-----YSKGQEILARILYVQPSTRQVGLSLRSHLL----PPGGA-VLDLHFSERVGE 355

Query: 294 VDRG 297
           V +G
Sbjct: 356 VVQG 359



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 122/295 (41%), Gaps = 54/295 (18%)

Query: 1162 GRVHFTELKNIC------VSDPLSGYDEG--QFDPLSG-YDEGQFVKCKVLEISRTVRGT 1212
            G V +  + NIC      ++D L   D+G  +  PLS  +  G  ++C V  +     G 
Sbjct: 100  GLVGYLPICNICDAYTNILNDKLD-TDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKEG- 157

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
             H+ L L        S N  D++       K L  +  L P M + G V++V   G  + 
Sbjct: 158  -HISLKL--------SINPKDVN-------KALNSVA-LKPAMTLSGCVESVEDHGYLVD 200

Query: 1273 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV---------AGRVLSVEPLSKRVEVTLK 1323
            +     +K  L   S     S +++  +G+ V         +GRV+    LS+  +  +K
Sbjct: 201  IGIG-GSKAFLPKKS----TSSKRDLYVGQYVLVLIEDVKDSGRVVR---LSQNPQALVK 252

Query: 1324 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1383
                  A   +   L NL  G ++ G +KRV  +GL +T   ++  G+     L ED   
Sbjct: 253  AC----AETKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFL-SSFTGVVDFLHLDEDK-- 305

Query: 1384 NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1438
              E+ Y  G+++  +IL V    R++ L ++S         L +   E   E ++
Sbjct: 306  --ESTYSKGQEILARILYVQPSTRQVGLSLRSHLLPPGGAVLDLHFSERVGEVVQ 358


>gi|302824310|ref|XP_002993799.1| hypothetical protein SELMODRAFT_431837 [Selaginella moellendorffii]
 gi|300138362|gb|EFJ05133.1| hypothetical protein SELMODRAFT_431837 [Selaginella moellendorffii]
          Length = 429

 Score =  130 bits (326), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 128/214 (59%), Gaps = 38/214 (17%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P+    IGK          PLS 
Sbjct: 207  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPD----IGK----------PLSG 252

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV------G 1370
             +E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++        
Sbjct: 253  HIEMSLAATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGC 307

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1430
            LCHV+E+S D + ++ T+Y+ G+ V+VKILKVD E +RISLGMK+SY       L+   E
Sbjct: 308  LCHVAEVSYDFIQDLSTLYKVGQWVQVKILKVDGETKRISLGMKASYL-----TLEDGIE 362

Query: 1431 EESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1464
               +EAI E  S        N++V ++++D+ S+
Sbjct: 363  PMEEEAINEEPS--------NTNVLMREVDLASK 388



 Score =  103 bits (257), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 149/308 (48%), Gaps = 65/308 (21%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            V+I Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+
Sbjct: 93   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHI 152

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1155
             S+N E+K + L L P     SDK              +GD++G RI+++ +GVGG  VQ
Sbjct: 153  RSVNHERKQVDLSLHP---KTSDKQ-----------FKKGDLLGRRITRVFAGVGGHTVQ 198

Query: 1156 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL--------EISR 1207
                 +G+VH   +KN+         ++G F  L+   E + ++ K L        +I +
Sbjct: 199  SRWESFGKVH-GFVKNV--------TEKGCFVVLAPSLEAR-IQLKNLSNSFVQNPDIGK 248

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
             + G  H+E+SL       ++T S D S             +      IV G + N+ + 
Sbjct: 249  PLSG--HIEMSL-------AATTSQDSS-----------GWKKFGAGEIVSGRIHNIEAF 288

Query: 1268 GCFIMLSRKLDAKVLL----------SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1317
            G FI L+   ++ V L          + +S  +++     + +G+ V  ++L V+  +KR
Sbjct: 289  GIFISLA---ESDVFLVCAPGCLCHVAEVSYDFIQDLSTLYKVGQWVQVKILKVDGETKR 345

Query: 1318 VEVTLKTS 1325
            + + +K S
Sbjct: 346  ISLGMKAS 353



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 27/32 (84%), Gaps = 1/32 (3%)

Query: 1533 AAEERLLEKD-APRTPDEFERLVRSSPNSSFV 1563
            AA+E+LL+KD  P T D+FERLV +SPNSS++
Sbjct: 398  AAKEKLLQKDQPPETMDDFERLVAASPNSSYM 429


>gi|302776692|ref|XP_002971496.1| hypothetical protein SELMODRAFT_412245 [Selaginella moellendorffii]
 gi|300160628|gb|EFJ27245.1| hypothetical protein SELMODRAFT_412245 [Selaginella moellendorffii]
          Length = 393

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 127/217 (58%), Gaps = 39/217 (17%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 208  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 267

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
             +E++L  + S+ +S                 G  K    +G            LCHVSE
Sbjct: 268  HIEMSLTATTSQDSS-----------------GWKK----FGC-----------LCHVSE 295

Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +S D + ++ T+Y+  + V+VKILKVD E +RISLGMK+SY   + D +    E   +EA
Sbjct: 296  VSYDFIQDLSTLYKVSQWVQVKILKVDAETKRISLGMKASYLTPE-DGI----EPMEEEA 350

Query: 1437 IEEVGSYNRSSLLENSSVAVQD-MDMESEDGGSLVLA 1472
            I E  S N + L++N     +D +D+ S+    L ++
Sbjct: 351  INEEPS-NTNVLMDNDEREEEDYLDLASKRFPQLCMS 386



 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 51/247 (20%)

Query: 981  NLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1039
            +L  N  I +TV A+I++K       + +   +LS++PS L  ++    ++  E  V+I 
Sbjct: 42   SLRGNVHITETVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVITFE-TVTIE 100

Query: 1040 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1099
            Q    YV +V + WA L +S HLK  LFILD++ +PSEL+ F+     G     +     
Sbjct: 101  QSDIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFRALQSRGPVPVPYK---K 157

Query: 1100 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ---- 1155
             E + + L L P       KT D      + F  +GD++  RI+++ +GVGG  VQ    
Sbjct: 158  CEPRKVDLSLHP-------KTSD------EQF-KKGDLLDRRITRVFAGVGGHTVQGRWE 203

Query: 1156 --------------------IGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FD 1187
                                + P L  R+    L N  V +P   +  G+         +
Sbjct: 204  SFGKVHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIE 263

Query: 1188 PLSGYDE 1194
            PLSG+ E
Sbjct: 264  PLSGHIE 270


>gi|355709772|gb|AES03703.1| programmed cell death 11 [Mustela putorius furo]
          Length = 399

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 201/418 (48%), Gaps = 40/418 (9%)

Query: 471 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 530
           ++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF 
Sbjct: 1   VKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNCEPSKERMLLSFK 60

Query: 531 MKPTRVSED--------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 582
           +      E           V LG LV   V   T + + V V+    +   +PT HL+DH
Sbjct: 61  LLSDPKKEHLGHSQKKRRTVSLGQLVDVKVLEKTKDGLEVAVLPYN-TPAFLPTPHLSDH 119

Query: 583 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 640
           + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P   + IHP  ++
Sbjct: 120 VANGPLLYHWLQTGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKSFAEIHPGMLL 179

Query: 641 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 700
            G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 180 IGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQR 239

Query: 701 ITLSLKQSCCSSTDASFMQEHF---LLEEK--IAMLQSSKHNGSELKWVEGFIIGSVIEG 755
           + LSL+ S C   D +          LEE+  +  L S++ +   ++ +     G V++ 
Sbjct: 240 MLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNR-DSVLIQTLAEMTPGMVLDL 298

Query: 756 KVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
           +V E  + G VV F E   V G +   + +  AG  VE G   +  IL+V   +  V +S
Sbjct: 299 EVQEVLEDGSVV-FSE-GPVPGLVLRASRYHRAGQEVEPGQKKKVVILNVDMLKLEVHVS 356

Query: 813 LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 870
           L    +        NR+A+K K+  E            A+V+ ++E++ V SL E  H
Sbjct: 357 LCHDLV--------NRRAKKLKKGSE----------YQAVVQHLEESFAVASLVETGH 396



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
             + + +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 168  KSFAEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 226

Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
              K+  VD+EK+R+ L ++ S
Sbjct: 227  VAKVTNVDEEKQRMLLSLRLS 247



 Score = 40.8 bits (94), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 35/242 (14%)

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            G+  +   ++ P M++ G+VK++   G F+     L      + +SD +V S    F  G
Sbjct: 164  GQDPKSFAEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEG 223

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDS-------------------RTASQSEINN----- 1337
            + V  +V +V+   +R+ ++L+ SD                    R   +S ++N     
Sbjct: 224  QTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVL 283

Query: 1338 ---LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1394
               L+ +  G ++  +++ V   G  +  E   + GL  V   S  H    E     G+K
Sbjct: 284  IQTLAEMTPGMVLDLEVQEVLEDGSVVFSEGP-VPGL--VLRASRYHRAGQEV--EPGQK 338

Query: 1395 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES-DEAIEEVGSYNRSSLLENSS 1453
             KV IL VD  K  + + +        A  L+  SE ++  + +EE  S+  +SL+E   
Sbjct: 339  KKVVILNVDMLKLEVHVSLCHDLVNRRAKKLKKGSEYQAVVQHLEE--SFAVASLVETGH 396

Query: 1454 VA 1455
            +A
Sbjct: 397  LA 398


>gi|302822837|ref|XP_002993074.1| hypothetical protein SELMODRAFT_431207 [Selaginella moellendorffii]
 gi|300139074|gb|EFJ05822.1| hypothetical protein SELMODRAFT_431207 [Selaginella moellendorffii]
          Length = 417

 Score =  128 bits (321), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 132/250 (52%), Gaps = 62/250 (24%)

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            + EGQFV+C+VL++ R  RG   +ELS                                 
Sbjct: 139  FTEGQFVRCRVLDLKRPGRGKMGLELS--------------------------------- 165

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
                   G+VKN   K         L+A++ L NLS+ +V++P + FP GK+++GR+LS+
Sbjct: 166  -------GFVKNGRRK-------VSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSI 211

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV-- 1369
            EPLS  +E++L  + S+ +S            G+IV G+I  +E++ +FI++  +++   
Sbjct: 212  EPLSGHIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFRIFISLAESDVFLV 266

Query: 1370 ----GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
                 LCHVSE+  D + ++ T+Y+ G+ V+VKIL   KE +RISLGMK+SY   + D +
Sbjct: 267  CAPGCLCHVSEVFYDFIQDLSTLYKVGQWVQVKIL---KETKRISLGMKASYLTPE-DGI 322

Query: 1426 QMSSEEESDE 1435
            +   EE  +E
Sbjct: 323  ETMEEEAINE 332



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1081
            V+I Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F
Sbjct: 81   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERF 126


>gi|391342289|ref|XP_003745453.1| PREDICTED: protein RRP5 homolog [Metaseiulus occidentalis]
          Length = 1008

 Score =  127 bits (318), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 166/713 (23%), Positives = 283/713 (39%), Gaps = 92/713 (12%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGL-----------------RGLARAADALDPIL 46
           ++I  GM L G V  V E  L I LPG +                 R  A ++      L
Sbjct: 105 KSIQEGMVLLGAVHYVQENSLRIALPGCVAQLPLNQLSHPYNDLVQRWRAESSAVKRRGL 164

Query: 47  DNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ 106
             + +  +   L  ++ VG ++  +VL      K  G   I LS   + +  G++ ET++
Sbjct: 165 GQKAQPEKLMRLDAMYKVGHIIKVVVLS-----KNSGN--INLSALCNHVNGGITRETLR 217

Query: 107 EGMVLTAYVKSIEDHGYILHFGLPSF-TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT 165
           +GM+L A V S+ED+GY +  G+    + F+  +N  E   +     + L  V +S    
Sbjct: 218 DGMILQAAVASVEDYGYSIELGIDGLASAFVSADNFTEVMYVG---QIFLVRVSKSHGGR 274

Query: 166 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
            K V     P    + V KD    +++ + PG++    V    ENGV L+    F G+V 
Sbjct: 275 LKFV-----PHHFEE-VAKD-NDWNLNNVTPGLVAEGTVLQSDENGVCLAL---FDGSVT 324

Query: 226 --IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH---- 279
             +   Q         ND     KV   +++  P        LN      R PP H    
Sbjct: 325 ACVEPRQCLRGAAVSIND-----KVRVILMYTHPI-------LNTVYCSMRIPPVHPADP 372

Query: 280 ------VKVGDIYDQSKVVRVDRGLGLLLDIP--STPVSTPAYVTISDVAEEEVRKLEKK 331
                 + +G +  ++ VV+V     + LDIP  ++  +  A     +V+++E       
Sbjct: 373 FKEFHGLSLGQLVKKAVVVQVTSSF-VKLDIPIKNSRHTVCAIAAKPNVSDDEAADPSDV 431

Query: 332 YKEGSCVRVRILGFRHLEG-LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 390
           +  G     R++G    EG L   +  +   EG  +T  ++  G ++  KV   +  G +
Sbjct: 432 FSVGQIAPCRVIGMSLFEGELYVSLRHSVVIEGCYYTEHELYVGRILPAKVKYTNDCGIV 491

Query: 391 VQFPGGVKALCPLPHMSEF-------EIVKPGKKFKVGAELVFRVLGVK--SKRITVTHK 441
            +   G  A C     S         E   PGK  +V      R +  K    R  VT  
Sbjct: 492 FEICPGTIAFCDFTEASPILNKSNVAEKYPPGKPVQVA----IRYINGKHYPPRYFVTCN 547

Query: 442 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           K L+KSK  I+  Y E     I+ G +   E+ G  + FYN V+G+ P  +L       P
Sbjct: 548 KQLIKSKHGIIDRYDEGNVGKISDGIVLLTERRGLLLGFYNKVRGWVPEEQLP-HSASRP 606

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG----------- 550
             ++  GQV+  ++++  P + R+ LS     ++ S      +G+ +S            
Sbjct: 607 DEVFRKGQVLSAKVLNVTPEASRMTLSLRCVDSKESTGQTDDVGAGISTDRRYIFEGKTH 666

Query: 551 -VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 609
               VV      + ++ +G+ K ++P EHL+D  + +  +   I  G   D+L V  +  
Sbjct: 667 LEALVVDKEGTCLKIVVEGFGKSSLPAEHLSDFPDLSKSLLERINIGDRLDELAVFGSSE 726

Query: 610 SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
              + S K  +        S+A  I   +++   V  +   G  V     L+ 
Sbjct: 727 GTTIFSMKPLVAQVLASCGSEAMKITEGAILPALVKKVTGRGVMVSLPNNLSA 779


>gi|164660949|ref|XP_001731597.1| hypothetical protein MGL_0865 [Malassezia globosa CBS 7966]
 gi|159105498|gb|EDP44383.1| hypothetical protein MGL_0865 [Malassezia globosa CBS 7966]
          Length = 1217

 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 135/267 (50%), Gaps = 24/267 (8%)

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
            LV  +G     R+H TE  +   +  L              D G    C VL + +  R 
Sbjct: 820  LVSLLGTPCRARLHATECSDSLANATLP-------------DVGDQCTCIVLSVRKKRR- 865

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
                ++S+R S        S D++  VD P   ++    L   M ++G VK VT+ G ++
Sbjct: 866  --EADVSIRPS----RLAPSDDVNASVDDP--VVDSTAQLEIGMHIRGLVKAVTNHGVYV 917

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
             L    DA+V++  L D YV+    +F +G+ V G +L +EP + ++E++LK S      
Sbjct: 918  SLGPHTDARVMIKELFDEYVKDFRTKFQVGQCVRGTILQIEP-NGQIELSLKKSRLEGVK 976

Query: 1332 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1391
             S     S +H G+ V   ++ +  YG+F+ ++ T++ GLCH SELS++   N    +  
Sbjct: 977  PSA-GAWSKIHEGEKVKAHVRGITEYGIFLQVDGTDVSGLCHKSELSDNKSANAIRAFAV 1035

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYF 1418
            G++VK  +LK+D +KRR++ G+K SYF
Sbjct: 1036 GDRVKAVVLKMDADKRRVAFGLKPSYF 1062



 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 117/512 (22%), Positives = 212/512 (41%), Gaps = 60/512 (11%)

Query: 61  IFHVGQLVSCIV--LQLDDDKKEIG-----------KRKIWLSLRLSLLYKGLSLETVQE 107
           IF VGQ V   V  +     K++ G            +++ L++  +++ +G+    +  
Sbjct: 204 IFSVGQWVRASVESVTAAGSKRQWGMGREGGEYERESQRVQLTMEPTIVNEGIRASDLSP 263

Query: 108 GMVLTAYVKSIEDHGYILHFGL-PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR 166
           G VL+A V+S ED+GY L  G+     GFLP  +      + +     + G  R++   R
Sbjct: 264 GYVLSAAVQSPEDYGYTLDLGINDDVHGFLPTKDRLRVGSVVLVEVSSVDG--RAV---R 318

Query: 167 KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 226
             +  S +P  V+   ++         ++PG+ V   + S +  G+ +     + GTVD 
Sbjct: 319 CQLATSGEPAPVTTAPSQSA-------MLPGVPVRALITSHVPQGLSVKLFGMWDGTVDS 371

Query: 227 FHLQNTFPTTNWKNDYNQHKKVNARILFVDPT--------------SRAVGLTLNPYLLH 272
           FH+       +        KK+ AR+L+  P               +R +GL+   +++ 
Sbjct: 372 FHVPRGLAHDDAA--LAPGKKIMARVLWNMPADYEQAQEASIDAVGARRIGLSCVSHVVS 429

Query: 273 -------NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 325
                     P +H     +  + +V  V R  GL+ ++P   +  PA+V IS V++E +
Sbjct: 430 LETPSAAGSVPLTHAFPIGMQLRVRVQAVFREWGLVCEVPGQDI--PAFVHISSVSDEHI 487

Query: 326 RKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
             L      ++ G+    R+ G    + L    ++AS         S+V  G VV+  + 
Sbjct: 488 DTLSATSGPWRVGTEHEARVTGHALTDCLLMMSMRASVLSKEFMRVSEVPIGQVVRVSIR 547

Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTH 440
            V      V+  G V  +    H S+  +  P KK+K   EL  R++       RI +T 
Sbjct: 548 KVTPKAIFVRMNGNVDGVVFPMHFSDVRLTHPEKKYKPNLELKARIIHTDPMRNRIVLTL 607

Query: 441 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 500
           K++L+ S L +L+   +    ++T+  + K       V     ++   P +E   D    
Sbjct: 608 KRSLITSDLPLLAKLEDVRVGVVTNAVVLKQLPASMLVELGGTLRAVVPFAEAS-DTAMT 666

Query: 501 PSSMYHV---GQVVKCRIMSSIPASRRINLSF 529
              +  +   G+VVK RI    P + RI  S 
Sbjct: 667 SEQLGELNPTGKVVKVRITKFEPETGRIMASM 698



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 115/541 (21%), Positives = 212/541 (39%), Gaps = 48/541 (8%)

Query: 197  GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 256
            G +V   ++ +    + +       G V   H  +    T+ +  Y  + ++ ARI+  D
Sbjct: 539  GQVVRVSIRKVTPKAIFVRMNGNVDGVVFPMHFSDVR-LTHPEKKYKPNLELKARIIHTD 597

Query: 257  PTSRAVGLTLNPYLLHNRAPP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 312
            P    + LTL   L+ +  P       V+VG + +   VV       +L+++  T  +  
Sbjct: 598  PMRNRIVLTLKRSLITSDLPLLAKLEDVRVGVVTN--AVVLKQLPASMLVELGGTLRAVV 655

Query: 313  AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD-V 371
             +   SD A     +L +    G  V+VRI  F    G     +K ++   L   + D V
Sbjct: 656  PFAEASDTAMTS-EQLGELNPTGKVVKVRITKFEPETGRIMASMKQASSVYLQRLNVDAV 714

Query: 372  KPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK-KFKVGAELVFRVL 429
              G  V  +     D    +V  P G +AL  L  +S    V   K +  + A  +   L
Sbjct: 715  DVGERVAARFAGWQDDVAILVLEPSGTRALLSLHDLSRQRRVDADKVRASLAANELLSDL 774

Query: 430  GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK--IEKHGCFVRFYNGVQGF 487
             V         KK  VK  + +     +A+  +   G      +E H   +     + G 
Sbjct: 775  YVA--------KKNAVKGYVVLSYESPDASKTVEVGGRYEARVVETHHDKLYSLVSLLGT 826

Query: 488  APRSELGLDPGCEPS----SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV- 542
              R+ L     C  S    ++  VG    C ++S     R  ++S  ++P+R++  D V 
Sbjct: 827  PCRARLHATE-CSDSLANATLPDVGDQCTCIVLSVRKKRREADVS--IRPSRLAPSDDVN 883

Query: 543  --------------KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 588
                          ++G  + G+V  VT + V  YV    ++   +  + L D  E+   
Sbjct: 884  ASVDDPVVDSTAQLEIGMHIRGLVKAVTNHGV--YVSLGPHTDARVMIKELFD--EYVKD 939

Query: 589  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 648
             ++  + G      ++    +  + LS K S +   +      S IH    V  +V  I 
Sbjct: 940  FRTKFQVGQCVRGTILQIEPNGQIELSLKKSRLEGVKPSAGAWSKIHEGEKVKAHVRGIT 999

Query: 649  ETGCFVRFLGR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            E G F++  G  ++G   +S+  D + A+  + + VG  V++ +L ++++  R+   LK 
Sbjct: 1000 EYGIFLQVDGTDVSGLCHKSELSDNKSANAIRAFAVGDRVKAVVLKMDADKRRVAFGLKP 1059

Query: 708  S 708
            S
Sbjct: 1060 S 1060



 Score = 47.8 bits (112), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 83/176 (47%), Gaps = 4/176 (2%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K   ++ ++    +V+  ++ VT K  F+ ++  +D  V   + SD  +  PEK++    
Sbjct: 528  KEFMRVSEVPIGQVVRVSIRKVTPKAIFVRMNGNVDGVVFPMHFSDVRLTHPEKKYKPNL 587

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             +  R++  +P+  R+ +TLK S   T+    +  L ++ VG +    + +     + + 
Sbjct: 588  ELKARIIHTDPMRNRIVLTLKRS-LITSDLPLLAKLEDVRVGVVTNAVVLKQLPASMLVE 646

Query: 1363 IENTNLVGLCHVSELSEDHV--DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  T L  +   +E S+  +  + +  +   G+ VKV+I K + E  RI   MK +
Sbjct: 647  LGGT-LRAVVPFAEASDTAMTSEQLGELNPTGKVVKVRITKFEPETGRIMASMKQA 701



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 513 CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 572
           C +M S+ AS  ++  FM    RVSE   V +G +V   +  VTP A+  +V   G   G
Sbjct: 515 CLLMMSMRASV-LSKEFM----RVSE---VPIGQVVRVSIRKVTPKAI--FVRMNGNVDG 564

Query: 573 TIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSD 630
            +   H +D  L H    +   KP  E    ++  D   + ++L+ K SLI S   L + 
Sbjct: 565 VVFPMHFSDVRLTHP---EKKYKPNLELKARIIHTDPMRNRIVLTLKRSLITSDLPLLAK 621

Query: 631 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-----QRADLSKTYYVGQ 685
              +    V +  V   +     V   G L    P ++A D      Q  +L+ T   G+
Sbjct: 622 LEDVRVGVVTNAVVLKQLPASMLVELGGTLRAVVPFAEASDTAMTSEQLGELNPT---GK 678

Query: 686 SVRSNILDVNSETGRITLSLKQS 708
            V+  I     ETGRI  S+KQ+
Sbjct: 679 VVKVRITKFEPETGRIMASMKQA 701


>gi|291000969|ref|XP_002683051.1| RRP5 protein [Naegleria gruberi]
 gi|284096680|gb|EFC50307.1| RRP5 protein [Naegleria gruberi]
          Length = 290

 Score =  122 bits (305), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 145/288 (50%), Gaps = 54/288 (18%)

Query: 1568 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL--ENEYGNPPEEAVVKVF 1625
            M FML+    EKA+ I ERA+  I+  +ENE+ N+W A  +L   N  GN     V  V 
Sbjct: 1    MTFMLNTYGFEKAKEIGERAVNRIHFSKENERFNLWSAILSLYVSNNRGN-----VDSVI 55

Query: 1626 QRALQYCDPKKVHLALL-------GLYERTEQ----------------------NKLA-- 1654
            ++ALQ     K HL  L        LYE+ +Q                      NK A  
Sbjct: 56   EKALQ--GASKPHLIYLQYAKILNKLYEKKKQRMDATEEEEDSQSENEEDEELKNKRANE 113

Query: 1655 -DELLYKMIKKFKHSCKVWLRRVQRLLKQQQE----------GVQAVVQRALLSLPRHKH 1703
             +ELL K+ + ++ +CK + R  +++ ++ ++            + V+ R+L   P+ +H
Sbjct: 114  LEELLTKIDQVYRKACKKY-RNEKKVFEEYEQWCISTLKDIKKAEHVLNRSLKVYPQKEH 172

Query: 1704 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR-LGDVDLIRGLFE 1762
            I   S+ AI+ +K       R+  E I+   PKR+D WSIYLD E +   D   IR LFE
Sbjct: 173  ISLKSKFAIILYKCENTIEARNAMENIIQNSPKRSDAWSIYLDCEQQHTNDQRYIRELFE 232

Query: 1763 RAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809
            R  +L +L  KKMK   ++YL++E   G+ ER E+VKQ A EY++S L
Sbjct: 233  RVCNLTTLSTKKMKSFLQRYLKFETQHGDSERQEHVKQIAKEYIQSKL 280


>gi|167380574|ref|XP_001735374.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165902669|gb|EDR28428.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 202

 Score =  121 bits (304), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 120/202 (59%), Gaps = 5/202 (2%)

Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1664
            A   LE  +G+  E+++ KV+  AL+ CD KK+ L ++  +   E+ +  ++++  + KK
Sbjct: 2    ALMKLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMI--HIYKEKKEEEEKIIRIIFKK 57

Query: 1665 FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1723
             K SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+G
Sbjct: 58   VKGSCKVYKKYCNFLMRNNREEEIKNTISKAKTTLDKKKMISLEIHIARLEYKYGSVDKG 117

Query: 1724 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1783
            RSMFE IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    KYLE
Sbjct: 118  RSMFEDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLSTKTMKTFLTKYLE 177

Query: 1784 YEKSVGEEERIEYVKQKAMEYV 1805
            +E   G+E + E+V+  A  +V
Sbjct: 178  FEIKYGDESKQEHVRDIAKSFV 199


>gi|167393838|ref|XP_001740734.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165895030|gb|EDR22836.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 202

 Score =  121 bits (303), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 117/202 (57%), Gaps = 5/202 (2%)

Query: 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1664
            A   LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +     +  + KK
Sbjct: 2    ALIQLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEEEEKINRI--IFKK 57

Query: 1665 FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1723
             K SCKV+ +    +++  ++E  +  + +A  +L + K I      A LE+K G  D+G
Sbjct: 58   VKGSCKVYKKYCNFIMRNNREEENKNTISKAKTTLDKKKMISLEIHIARLEYKYGSVDKG 117

Query: 1724 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1783
            RSMFE IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    KYLE
Sbjct: 118  RSMFEDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLSTKTMKTFLTKYLE 177

Query: 1784 YEKSVGEEERIEYVKQKAMEYV 1805
            +E   G+E + E V+  A  +V
Sbjct: 178  FEIKYGDESKQENVRDIAKSFV 199


>gi|167388381|ref|XP_001738546.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165898191|gb|EDR25125.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 199

 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 114/191 (59%), Gaps = 5/191 (2%)

Query: 1609 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1668
            LE  +G+  E+++ KV+   L+ CD KK+ L ++  +   E+ +  ++++  + KK K S
Sbjct: 3    LEANHGD--EKSLKKVYNEVLEVCDRKKIMLHMI--HIYKEKKEEEEKIIRIIFKKVKGS 58

Query: 1669 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1727
            CKV+ +    L++  ++E  +  + +A  +L + K I      A LE+K G  D+GRSMF
Sbjct: 59   CKVYKKYCNFLMRNNREEENKNTISKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSMF 118

Query: 1728 EGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1787
            E IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    KYLE+E  
Sbjct: 119  EDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFEIK 178

Query: 1788 VGEEERIEYVK 1798
             G+E + E+V+
Sbjct: 179  YGDESKQEHVR 189


>gi|154274013|ref|XP_001537858.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415466|gb|EDN10819.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 799

 Score =  114 bits (285), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 149/605 (24%), Positives = 263/605 (43%), Gaps = 41/605 (6%)

Query: 62  FHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 118
           F +GQ +   V   + +    K  GK+ I LS+       GLS   +     + A V S+
Sbjct: 189 FKLGQYLRAAVTSTETEVNHGKIKGKKHIELSVDPREANSGLSKSDLVVNATVQASVLSL 248

Query: 119 EDHGYILHFGLP--SFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 175
           EDHG ++  GL      GF+    +  +   + +K G +   VV   +    VV LS++ 
Sbjct: 249 EDHGLVMDLGLEDGQTRGFMSSKEIPHDLELLQIKEGTVFLCVVTGHNANGNVVKLSANL 308

Query: 176 DTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
            T              +I   +PG      +  +   G+    +      VDI     T 
Sbjct: 309 PTAGSIKKSHFLTSAPTIHSFLPGTAAEILLTQVTSTGMAGKIMGMLDAVVDIVQSGATA 368

Query: 234 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN---------PYLLHNRAPPSHV-KVG 283
              +    Y+   K+  R++   PT+  + L  +         P +L  ++    V  + 
Sbjct: 369 GKEDITARYHVGAKIKGRLICTFPTAEPLKLGFSILDHVVKFMPTVLDRKSSCEVVPAIS 428

Query: 284 DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRV 340
            I  + KV +V+ GLG+             +V IS +++++V  +   +  Y   S    
Sbjct: 429 AIVPEVKVTKVEPGLGVYAQFNDKHY---GFVHISRLSDDKVDSISSTQGPYMVDSTHEA 485

Query: 341 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPG 395
           RI+GF  L+ L    L+    +       DV  G VVKGK+    I  D   G IV    
Sbjct: 486 RIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLAD 545

Query: 396 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILS 453
           G+  L P  HMS+ ++  P KKF+ G ++  R+L V  + +++ +T KKTL+ S+ +   
Sbjct: 546 GISGLVPGMHMSDTKLQHPEKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWC 605

Query: 454 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 513
            Y++      + G I  I+ HG  V+FY  V+GF P SE+      +P+  +++GQVV  
Sbjct: 606 DYSDILPGNKSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNV 665

Query: 514 RIMSSIPASRRINLSF--MMKPTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGY 569
             ++     R++ +S    +  T   +  L  +  G+ VSG V   +   +++ +   G 
Sbjct: 666 HALNVDAELRKLVVSCKDQLSSTEAYKRALEHIHPGNTVSGTVFEKSNEDILLKLEDSGL 725

Query: 570 SKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ- 625
               +  EH++D          + I+ G + ++LL+L+ + S+ L+  + K SL  + Q 
Sbjct: 726 V-ARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNIQKSHQLIKVTNKPSLKQARQR 784

Query: 626 -QLPS 629
            +LP+
Sbjct: 785 GELPT 789



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 106/228 (46%), Gaps = 22/228 (9%)

Query: 1247 KIEDLSPNMIVQGYVKNV-----TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            ++ED++   +V+G ++ +        G  + L+  +   V   ++SD  ++ PEK+F  G
Sbjct: 512  RLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGISGLVPGMHMSDTKLQHPEKKFREG 571

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
              V+ R+LSV  L KR            +  S   + S++  G+   G I  ++S+G  +
Sbjct: 572  VQVSARILSVN-LEKRQLRLTLKKTLLNSESSTWCDYSDILPGNKSPGTIISIQSHGAIV 630

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
                  + G   VSE+SE ++ +    +  G+ V V  L VD E R++ +  K       
Sbjct: 631  QFYG-EVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNVDAELRKLVVSCKD------ 683

Query: 1422 ADNLQMSSEEESDEAIEEV--GSYNRSSLLENSSVAVQDMDMESEDGG 1467
                Q+SS E    A+E +  G+    ++ E S+   +D+ ++ ED G
Sbjct: 684  ----QLSSTEAYKRALEHIHPGNTVSGTVFEKSN---EDILLKLEDSG 724



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 125/270 (46%), Gaps = 22/270 (8%)

Query: 468 ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 523
           +TK+E   G + +F +   GF   S L  D     SS    Y V    + RI+     S 
Sbjct: 436 VTKVEPGLGVYAQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVG---FSA 492

Query: 524 RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 574
             NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 493 LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 551

Query: 575 PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 632
           P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 552 PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 608

Query: 633 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
            I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 609 DILPGNKSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 668

Query: 693 DVNSETGRITLSLKQSCCSSTDASFMQEHF 722
           +V++E  ++ +S K    S+       EH 
Sbjct: 669 NVDAELRKLVVSCKDQLSSTEAYKRALEHI 698



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 127/289 (43%), Gaps = 37/289 (12%)

Query: 1135 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            G +V G+I K+L    G+ GL+V +   + G V    + +  +  P     E +F     
Sbjct: 519  GAVVKGKIEKLLIGPDGISGLIVSLADGISGLVPGMHMSDTKLQHP-----EKKFR---- 569

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
              EG  V  ++L ++   R           + +  +  + SD+      PG       + 
Sbjct: 570  --EGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYSDI-----LPG-------NK 615

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
            SP  I+     ++ S G  +    ++   + +S +S+ Y++ P + F IG++V    L+V
Sbjct: 616  SPGTII-----SIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNV 670

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1371
            +   +++ V+ K  D  +++++    L ++H G+ V G +    +  + + +E++ LV  
Sbjct: 671  DAELRKLVVSCK--DQLSSTEAYKRALEHIHPGNTVSGTVFEKSNEDILLKLEDSGLVAR 728

Query: 1372 C---HVSELSEDHVDNIETIYRAGEKV-KVKILKVDKEKRRISLGMKSS 1416
                HVS+             R G+K+ ++ IL + K  + I +  K S
Sbjct: 729  LNAEHVSDGQASRNGAALARIRVGQKLNELLILNIQKSHQLIKVTNKPS 777


>gi|402589157|gb|EJW83089.1| hypothetical protein WUBG_05999 [Wuchereria bancrofti]
          Length = 598

 Score =  114 bits (285), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 138/550 (25%), Positives = 251/550 (45%), Gaps = 48/550 (8%)

Query: 1   MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 60
           + P  ++ GM   GVV ++ E ++++    G+       +  + +L  E   N    L  
Sbjct: 50  ITPNFLAEGMLGLGVVMKIREAEILLECSDGVIVKVPVQNFGNLML--ETLRNSSVTLED 107

Query: 61  IFHVGQLVSCIVLQLDD--DKKEIGKRKIWLSLRLSLLYKGLSLE--TVQEGMVLTAYVK 116
           +F VGQ+++  V++  +  D ++ GK+  +  +    L     L    + +G+VL   V 
Sbjct: 108 VFRVGQMLAFKVIKGRETHDTQKKGKKSPYPIVSCDPLIVNFHLNPGALIDGLVLNGVVG 167

Query: 117 SIEDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVY 170
           S+ED G I++ GL S    GFL   +L     + S +  +P LL      S ++  +V+ 
Sbjct: 168 SVEDKGVIINLGLQSVELKGFLAERHLPSTFPKESLVKGQPLLLRIQNESSSNKKTRVIN 227

Query: 171 LSSDPD--TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 228
           LS+ P+   +   V K LK   ++ L+PG ++         +GV ++      G V   H
Sbjct: 228 LSAVPEMECLDDAVVKKLK---LNDLMPGTLLLVNPLQPTHSGVYVNIGNDIKGYVSRQH 284

Query: 229 LQNTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKV 282
           L        ++ND Y   K     ++F    S  + L  +P ++       R    ++ +
Sbjct: 285 L-----PPRYRNDPYKCLKSFKTIVMFCQQNSNLLTLNGHPDIIAVSKFVKRTNFENIHI 339

Query: 283 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 342
           GDI  + +V  +D+   +  D+            ++  A +   K   +Y++G+  + R+
Sbjct: 340 GDII-ECRVTSMDKSGNVNFDLVHEDERNSL---VAAFARKTKLKDSVEYEKGTVHKARV 395

Query: 343 LGFRHLEG-LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 401
           L F+ +E  L    LK    + +V +  D  PG+ V  K+ ++   G  V+    +    
Sbjct: 396 LSFKMVERILMVTTLKDILAQKMV-SIKDAVPGVKVTAKIESLLDKGLFVKIYNSIPGFI 454

Query: 402 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEAT 459
           P  H+S+  + +  K F VG EL  R+L V    +R+ +T+K++L+ SK  I+ +YAE T
Sbjct: 455 PKIHLSDKLVTRIDKHFAVGDELNCRILNVNKLKERLILTNKQSLISSKDTIIKNYAEVT 514

Query: 460 DRLITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSMYHVGQVVKCRI 515
             +IT G+I  I +H   G  + FY G++GF  P+    L    +      VG  V+ R+
Sbjct: 515 TNIITTGYI--ISQHSSGGLVIGFYGGIRGFMLPKEAERLGTNVK------VGLTVRVRV 566

Query: 516 MSSIPASRRI 525
           +S  P   R+
Sbjct: 567 ISVDPQRERL 576



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 624 AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 683
           AQ++ S    + P   V   + ++++ G FV+    + GF P+    D     + K + V
Sbjct: 415 AQKMVSIKDAV-PGVKVTAKIESLLDKGLFVKIYNSIPGFIPKIHLSDKLVTRIDKHFAV 473

Query: 684 GQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
           G  +   IL+VN    R+ L+ KQS  SS D 
Sbjct: 474 GDELNCRILNVNKLKERLILTNKQSLISSKDT 505



 Score = 40.8 bits (94), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 1234 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1293
            ++T  D   + +  I+D  P + V   ++++  KG F+ +   +   +   +LSD  V  
Sbjct: 407  VTTLKDILAQKMVSIKDAVPGVKVTAKIESLLDKGLFVKIYNSIPGFIPKIHLSDKLVTR 466

Query: 1294 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1353
             +K F +G  +  R+L+V  L +R+ +T K S   ++  + I N + +    I  G I  
Sbjct: 467  IDKHFAVGDELNCRILNVNKLKERLILTNKQS-LISSKDTIIKNYAEVTTNIITTGYIIS 525

Query: 1354 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
              S G  +      + G     E      + + T  + G  V+V+++ VD ++ R+
Sbjct: 526  QHSSGGLVIGFYGGIRGFMLPKE-----AERLGTNVKVGLTVRVRVISVDPQRERL 576


>gi|70924365|ref|XP_735043.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56508345|emb|CAH80488.1| hypothetical protein PC000068.04.0 [Plasmodium chabaudi chabaudi]
          Length = 199

 Score =  112 bits (280), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 107/185 (57%), Gaps = 6/185 (3%)

Query: 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK 1599
            + D    P+++E+L+ S  N S +WI Y+A+ L   ++++AR+IAERAL+TI+I    EK
Sbjct: 19   QNDEKVKPNDYEKLLVSEKNKSTIWISYIAYYLEKGNIQEARNIAERALKTIDIHLIEEK 78

Query: 1600 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLY 1659
            LNI++ Y N+E  YG+   +    +F+RAL   + K ++L  + + +  ++     EL  
Sbjct: 79   LNIYLCYINMECAYGDNLND----IFKRALLVNNEKSIYLHTMNILKMNKKYNELKELCE 134

Query: 1660 KMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717
            + IKKFK+S K+W R ++ L      +E    ++  +L +LP+ KH+  I   A  E+K 
Sbjct: 135  EAIKKFKYSKKIWTRYLELLHNTLNDEEYAHNILLXSLHALPKRKHLNIIINAARFEYKY 194

Query: 1718 GVADR 1722
               +R
Sbjct: 195  SNIER 199


>gi|403160369|ref|XP_003320886.2| hypothetical protein PGTG_02908 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|375169528|gb|EFP76467.2| hypothetical protein PGTG_02908 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1187

 Score =  111 bits (277), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 151/642 (23%), Positives = 267/642 (41%), Gaps = 95/642 (14%)

Query: 86  KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP--------------- 130
           K+ L++    +  G+    +Q  M LT  VKSIED GYI+  G+                
Sbjct: 199 KVTLTIDPVHINSGIDKSDLQGRMTLTGAVKSIEDRGYIIDLGISVDSNVDSATSQASAN 258

Query: 131 SFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 182
           + T F+   +  + +G++ +         G +L   +  +        +S +   +S+ V
Sbjct: 259 NLTAFISFADATKATGVNHQDEPSLQWEVGQVLWCRINKLSENGATCMVSVNAQDISRSV 318

Query: 183 TKDLKGISIDLLVPGMMVSTRVQSILE-NGVMLSFLTYFTGTVDIFHLQ-NTFPTTNWKN 240
                  +ID ++P  MVS  + S++   G+ ++ L +F  T+ + HL+ ++    +   
Sbjct: 319 L--TAATNIDSILPLHMVSCLITSVIPGQGLNVTLLGFFKATIQVPHLECHSTTGVDLSE 376

Query: 241 DYNQHKKVNARILF-VDPTSRAVGLTLNPYLLHNR--------------AP--PSHVK-- 281
            +   +K+ AR+L+   P+   V L  N  LL  +               P  P+H++  
Sbjct: 377 KFKVGQKLRARVLWDTIPSKNHVSLEGNESLLGPKIFSLSIFDHVVKLDTPGLPTHLQNG 436

Query: 282 ---------------VGDIYDQSKVVRVDRGL-----------GLLLDIPSTPVSTPAYV 315
                          +G  +   ++ RVD              GL ++I   PV+     
Sbjct: 437 ERTRCDKIDQLLLYPIGYTFQTVRIFRVDEEWGVYATCVNGEDGLPIEI-DPPVAFAHIA 495

Query: 316 TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGM 375
            ISD     + K    YK G+  + R+ G   ++G+    L+ S  E       D+  G 
Sbjct: 496 AISDSFLSCLSKDSGPYKVGTTHKARVTGVSPVDGVLQLTLQPSVVEQAYMRSEDIPIGA 555

Query: 376 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
           ++ G +  + +   IV+  GG  A+    H S+ +   P KKF  GA++  RVL     R
Sbjct: 556 LMNGTIKKLTATNLIVRIEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARVLYTNPDR 615

Query: 436 --ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR--S 491
             I +T +KTLV++   I++SY  A+        ITK+E+    + F+   +G  PR  +
Sbjct: 616 DQIVLTLRKTLVRAD-EIITSYESASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEA 674

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---VKLGSLV 548
           E G     +P  ++  G++VK +I++     RRI L+ + + T      L   + +G  V
Sbjct: 675 EAGYVESMKP--IFTPGRLVKVKIINVDVEKRRI-LASVKRSTSGEASKLSTVIDVGDQV 731

Query: 549 SGVVDVVTPNAVVVYVIAKGYS--------KGTIPTEHLADHLE-HATVMKSVIKPGYEF 599
           S  V V+  NA +   +    +        KG I  E LA   +     +K+ +K G E 
Sbjct: 732 SAFVTVIR-NAFIQLDLRHTNADPSSSEPVKGLISVEILAKKYDISPEALKNQLKAGDEV 790

Query: 600 DQLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVV 640
             L+V   +    LL   Y   +  Q Q+      IH  ++V
Sbjct: 791 KDLIVHTKDKEKELLMVGYKSASIPQEQMTGPIRFIHDKNLV 832



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            ED+    ++ G +K +T+    + +    DA V   + SD     PEK+F  G  V  RV
Sbjct: 549  EDIPIGALMNGTIKKLTATNLIVRIEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARV 608

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
            L   P   ++ +TL+ +  R  +   I +  +  VG      I +VE   + I     + 
Sbjct: 609  LYTNPDRDQIVLTLRKTLVR--ADEIITSYESASVGTCAWAMITKVEEKFMLIEFFG-HT 665

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL   +E    +V++++ I+  G  VKVKI+ VD EKRRI   +K S
Sbjct: 666  KGLVPRAEAEAGYVESMKPIFTPGRLVKVKIINVDVEKRRILASVKRS 713



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 99/215 (46%), Gaps = 16/215 (7%)

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV------SEDDLVKLGSLVSGVVDVV 555
           S  Y VG   K R+    P    + L+  ++P+ V      SED  + +G+L++G +  +
Sbjct: 509 SGPYKVGTTHKARVTGVSPVDGVLQLT--LQPSVVEQAYMRSED--IPIGALMNGTIKKL 564

Query: 556 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 614
           T   ++V +  +G     +  +H +D ++HA   K    PG +   ++L  + +   ++L
Sbjct: 565 TATNLIVRI--EGGHDAVVWPDHYSD-VKHAHPEKK-FAPGAKVKARVLYTNPDRDQIVL 620

Query: 615 SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 674
           + + +L+  A ++ +        +     +  + E    + F G   G  PR++A  G  
Sbjct: 621 TLRKTLVR-ADEIITSYESASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEAEAGYV 679

Query: 675 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
             +   +  G+ V+  I++V+ E  RI  S+K+S 
Sbjct: 680 ESMKPIFTPGRLVKVKIINVDVEKRRILASVKRST 714


>gi|195573447|ref|XP_002104705.1| GD18301 [Drosophila simulans]
 gi|194200632|gb|EDX14208.1| GD18301 [Drosophila simulans]
          Length = 192

 Score =  107 bits (266), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 107/183 (58%), Gaps = 1/183 (0%)

Query: 1626 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQ 1684
            + AL   DP +++++++ + ++ ++      +L  ++ KFK   +VW    +      + 
Sbjct: 4    REALNCNDPLEIYISVVDILKKNKRKDRLSSVLTTVLNKFKTELRVWPVAAEAYFWLGKS 63

Query: 1685 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1744
            + V  ++QRAL +LP  +HI  I   A L  K+   D  +++ + +++ YPKR D+WS+Y
Sbjct: 64   DQVHNLLQRALRALPNQEHIPCIVSFAKLYAKHDNNDMAQTLLDDVVTSYPKRIDIWSVY 123

Query: 1745 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804
            +D  I+ G +D  R + ERA+   L P KM+ ++KKYL+ E++ G +  +  VKQ+A ++
Sbjct: 124  VDMLIKAGLIDSARNVLERAVLQKLKPNKMQVIYKKYLQLEENHGTDATVAKVKQQAEQW 183

Query: 1805 VES 1807
            V++
Sbjct: 184  VKN 186


>gi|167385610|ref|XP_001737415.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165899785|gb|EDR26302.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 170

 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 1/145 (0%)

Query: 1662 IKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1720
             KK K SCKV+ +  + +++  ++E  +  + +A  +L + K I      A LE+K G  
Sbjct: 23   FKKVKGSCKVYKKYCKFIMRNNREEENKNTISKAKTTLDKKKMISLEIHIARLEYKYGSV 82

Query: 1721 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1780
            D+GRSMFE IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    K
Sbjct: 83   DKGRSMFEDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLNTKTMKTFLTK 142

Query: 1781 YLEYEKSVGEEERIEYVKQKAMEYV 1805
            YLE+E   G+E + E+V+  A  +V
Sbjct: 143  YLEFEIKYGDESKQEHVRDIAKSFV 167


>gi|302796338|ref|XP_002979931.1| hypothetical protein SELMODRAFT_419585 [Selaginella moellendorffii]
 gi|300152158|gb|EFJ18801.1| hypothetical protein SELMODRAFT_419585 [Selaginella moellendorffii]
          Length = 309

 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 80/114 (70%), Gaps = 5/114 (4%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            V G+VKNVT KGCF++LS  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 160  VHGFVKNVTEKGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 219

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
             +E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++V 
Sbjct: 220  HIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLPESHVVA 268



 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 46/191 (24%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            V+I Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F+ RF +G     ++
Sbjct: 46   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCYI 105

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1155
             S+N E+K + L L P       KT D      + F  + D++G RI+++ +GVGG  VQ
Sbjct: 106  RSVNHERKQVDLSLHP-------KTSD------EQF-KKNDLLGRRITRVFAGVGGHTVQ 151

Query: 1156 ------------------------IGPHLYGRVHFTELKNICVSDPLSGYDEGQ------ 1185
                                    + P L  R+    L N  V +P   +  G+      
Sbjct: 152  GRWESLGKVHGFVKNVTEKGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRI 211

Query: 1186 --FDPLSGYDE 1194
               +PLSG+ E
Sbjct: 212  LSIEPLSGHIE 222


>gi|284044326|ref|YP_003394666.1| RNA binding S1 domain-containing protein [Conexibacter woesei DSM
            14684]
 gi|283948547|gb|ADB51291.1| RNA binding S1 domain protein [Conexibacter woesei DSM 14684]
          Length = 529

 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 186/384 (48%), Gaps = 53/384 (13%)

Query: 1031 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1090
            FEE DV     VTG+V ++D +  L+ I    K++  I  +     +  + +    +G+ 
Sbjct: 38   FEEGDV-----VTGHVVRIDKDEVLVDIG--YKSEGVIPSNELSIRKSVDPKDEVEMGEE 90

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
            V   VL+  KE +  RL+L   +        + +   ++     G+ V G + +++ G  
Sbjct: 91   VDALVLT--KEDQDGRLILSKKR-----ARFEKAWRRIEAAAESGEPVDGTVIEVVKG-- 141

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
            GL++ +G   +      +++ +   D   G               Q ++C+V+E++R+  
Sbjct: 142  GLIIDLGVRGFLPASLVDIRRVPHLDEYLG---------------QTIECRVIELNRS-- 184

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
               +V LS R+ L+     +   +             ++ L P MIV+G + N+   G F
Sbjct: 185  -RNNVVLSRRAVLEEQRREDRERI-------------LDRLQPGMIVEGTISNIVDFGAF 230

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            + L   +D  + +S LS  +V  P +   IG  V+ +VL ++   +R+ + LK    +T 
Sbjct: 231  VDLD-GIDGLIHISELSWSHVNHPSEILSIGDTVSVKVLDIDRDRQRISLGLK----QTQ 285

Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1390
                   +   +VGD + G++ +V ++G F+ I +  + GL H+SEL++ HV+N   I +
Sbjct: 286  EDPWQRVVDTYNVGDELEGRVTKVVTFGAFVEILD-GVEGLVHISELAQHHVENPREIIQ 344

Query: 1391 AGEKVKVKILKVDKEKRRISLGMK 1414
              ++VKVKIL++D E+RR+SL +K
Sbjct: 345  PNDEVKVKILEIDSERRRLSLSIK 368



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++PGM+V+G +  +  FGA V    G+  L  +  +S   +  P +   +G  +  +VL 
Sbjct: 211 LQPGMIVEGTISNIVDFGAFVDL-DGIDGLIHISELSWSHVNHPSEILSIGDTVSVKVLD 269

Query: 431 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           +    +RI++  K+T       ++ +Y    D L   G +TK+   G FV   +GV+G  
Sbjct: 270 IDRDRQRISLGLKQTQEDPWQRVVDTY-NVGDEL--EGRVTKVVTFGAFVEILDGVEGLV 326

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL       P  +      VK +I+      RR++LS 
Sbjct: 327 HISELAQHHVENPREIIQPNDEVKVKILEIDSERRRLSLSI 367



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 151/392 (38%), Gaps = 67/392 (17%)

Query: 444 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 503
           +V +  A L+ + E     +  G + +I+K    V      +G  P +EL +    +P  
Sbjct: 27  IVPNYDATLTPFEEGD---VVTGHVVRIDKDEVLVDIGYKSEGVIPSNELSIRKSVDPKD 83

Query: 504 MYHVGQVVKCRIMSSIPASRRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPN 558
              +G+ V   +++      R+ LS     F     R+      + G  V G V  V   
Sbjct: 84  EVEMGEEVDALVLTKEDQDGRLILSKKRARFEKAWRRIEA--AAESGEPVDGTVIEVVKG 141

Query: 559 AVVVYVIAKGYSKGTIPTEHLADHLEH---ATVMKSVIKPGYEFDQLLVLDNESSNLLLS 615
            +++ +  +G+   ++       HL+     T+   VI+          L+   +N++LS
Sbjct: 142 GLIIDLGVRGFLPASLVDIRRVPHLDEYLGQTIECRVIE----------LNRSRNNVVLS 191

Query: 616 AKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 674
            +  L    ++        + P  +V G + NI++ G FV   G + G    S+      
Sbjct: 192 RRAVLEEQRREDRERILDRLQPGMIVEGTISNIVDFGAFVDLDG-IDGLIHISELSWSHV 250

Query: 675 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 734
              S+   +G +V   +LD++ +  RI+L LKQ+                          
Sbjct: 251 NHPSEILSIGDTVSVKVLDIDRDRQRISLGLKQT-------------------------- 284

Query: 735 KHNGSELKW---VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 791
                E  W   V+ + +G  +EG+V +   FG  V   +   V G +   +LA   VE+
Sbjct: 285 ----QEDPWQRVVDTYNVGDELEGRVTKVVTFGAFVEILDG--VEGLVHISELAQHHVEN 338

Query: 792 -------GSVIQAAILDVAKAERLVDLSLKTV 816
                     ++  IL++    R + LS+K V
Sbjct: 339 PREIIQPNDEVKVKILEIDSERRRLSLSIKRV 370


>gi|414883929|tpg|DAA59943.1| TPA: hypothetical protein ZEAMMB73_646840 [Zea mays]
          Length = 208

 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 76/106 (71%), Gaps = 10/106 (9%)

Query: 1483 LEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1542
            LE N+ +   ++ NG   N           +K+++  KK+ +++RE EI A EER L++D
Sbjct: 50   LEDNISNTCLEIANGTEANA----------KKSDKQLKKEARKQRELEISAMEERALQED 99

Query: 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1588
             P+TPD+FE+LVRSSPNSSF+WIKYMA +L +ADV+KAR++AER++
Sbjct: 100  IPQTPDDFEKLVRSSPNSSFIWIKYMATLLDLADVKKARAVAERSV 145


>gi|171910224|ref|ZP_02925694.1| 30S ribosomal protein S1 [Verrucomicrobium spinosum DSM 4136]
          Length = 557

 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 220/470 (46%), Gaps = 98/470 (20%)

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1027
            I +VND++ N+V            ++ R + ++ + + ++ FL   S+KP          
Sbjct: 149  IVKVNDERKNIV------------LSRREVIEAERAEQRQKFL--ESVKP---------- 184

Query: 1028 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQR 1083
                       G +V G V  +  ++ +      +   L I D  +     PSEL     
Sbjct: 185  -----------GDKVEGIVKNI-TDFGVFVDLNGMDGLLHITDMTWGRLNHPSEL----- 227

Query: 1084 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGR 1141
               IG+ +   +L +N+EK+ + L L+  Q          SN  ++++     G  V G 
Sbjct: 228  -VAIGQKLNVQILEVNREKERVSLGLKQMQ----------SNPWESIENRYPVGQRVHGT 276

Query: 1142 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1201
            ++K+++   G  V++   + G +H +EL           + +    P      GQ V  +
Sbjct: 277  VTKLVAY--GAFVEVEEGVEGLIHVSELS----------WTKRIARPSDVLTVGQKVDAQ 324

Query: 1202 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1261
            VL I++  R    + L +R  LD    TN  D   ++D         E       ++G V
Sbjct: 325  VLGINKEER---KISLGVRQ-LD----TNPWD---NID---------ERFPIGTKMKGKV 364

Query: 1262 KNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1320
            +N+T+ G F+ L   +D  + +S+LS    +  P +    G+ V   +L ++  ++R+ +
Sbjct: 365  RNLTAYGAFVELEEGIDGMIHVSDLSWTRKINHPSEVLKKGQEVEATILEIDKANQRISL 424

Query: 1321 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1380
             +K  +    S+ +    +   VGD+V G++ ++ S+G F+ +E+ ++ GL H+S+LSED
Sbjct: 425  GIKQLEGDPWSEID----TRFKVGDLVKGRVAKIASFGAFVELED-DIDGLVHISQLSED 479

Query: 1381 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1430
            HV+ ++ +   G++V+ +++KVDK +RRI L +K+  +  D ++L+  S+
Sbjct: 480  HVNRVKDVLNVGDEVEARVIKVDKVERRIGLSVKAVNY--DEESLKKESQ 527



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 172/414 (41%), Gaps = 72/414 (17%)

Query: 597 YEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
           YEF +++ +++E  N++LS +  +    A+Q       + P   V G V NI + G FV 
Sbjct: 145 YEF-KIVKVNDERKNIVLSRREVIEAERAEQRQKFLESVKPGDKVEGIVKNITDFGVFVD 203

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
             G + G    +    G+    S+   +GQ +   IL+VN E  R++L LKQ        
Sbjct: 204 LNG-MDGLLHITDMTWGRLNHPSELVAIGQKLNVQILEVNREKERVSLGLKQ-------- 254

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
                          +QS+     E +    + +G  + G V +   +G  V  EE   V
Sbjct: 255 ---------------MQSNPWESIENR----YPVGQRVHGTVTKLVAYGAFVEVEE--GV 293

Query: 776 YGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 827
            G I   +L+           +  G  + A +L + K ER + L +        R+ ++N
Sbjct: 294 EGLIHVSELSWTKRIARPSDVLTVGQKVDAQVLGINKEERKISLGV--------RQLDTN 345

Query: 828 RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYN-TQKF 885
                 +R    +K  G  + + A    V          E    I G   VSD + T+K 
Sbjct: 346 PWDNIDERFPIGTKMKGKVRNLTAYGAFV----------ELEEGIDGMIHVSDLSWTRKI 395

Query: 886 --PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 943
             P +    GQ V AT++ +  ++   R+ L +K +          ++  + + VG LV+
Sbjct: 396 NHPSEVLKKGQEVEATILEIDKANQ--RISLGIKQL-----EGDPWSEIDTRFKVGDLVK 448

Query: 944 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
             + +I      ++      G +HI+++++D  N V+++ +   +G  V AR+I
Sbjct: 449 GRVAKIASFGAFVELEDDIDGLVHISQLSEDHVNRVKDVLN---VGDEVEARVI 499



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 156/367 (42%), Gaps = 45/367 (12%)

Query: 196 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN-TFPTTNWKNDYNQ-HKKVNARIL 253
           PG  V   V++I + GV +       G   + H+ + T+   N  ++     +K+N +IL
Sbjct: 184 PGDKVEGIVKNITDFGVFVDL----NGMDGLLHITDMTWGRLNHPSELVAIGQKLNVQIL 239

Query: 254 FVDPTSRAVGLTL-----NPY-LLHNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLDI 304
            V+     V L L     NP+  + NR P     H  V  +      V V+ G+  L+ +
Sbjct: 240 EVNREKERVSLGLKQMQSNPWESIENRYPVGQRVHGTVTKLVAYGAFVEVEEGVEGLIHV 299

Query: 305 P----STPVSTPAYV-TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 359
                +  ++ P+ V T+    + +V  + K+ ++ S      LG R L+         +
Sbjct: 300 SELSWTKRIARPSDVLTVGQKVDAQVLGINKEERKIS------LGVRQLD--------TN 345

Query: 360 AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKF 418
            ++ +         G  +KGKV  + ++GA V+   G+  +  +  +S   +I  P +  
Sbjct: 346 PWDNI---DERFPIGTKMKGKVRNLTAYGAFVELEEGIDGMIHVSDLSWTRKINHPSEVL 402

Query: 419 KVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 476
           K G E+   +L +   ++RI++  K+ L     + + +  +  D  +  G + KI   G 
Sbjct: 403 KKGQEVEATILEIDKANQRISLGIKQ-LEGDPWSEIDTRFKVGD--LVKGRVAKIASFGA 459

Query: 477 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 536
           FV   + + G    S+L  D       + +VG  V+ R++      RRI LS  +K    
Sbjct: 460 FVELEDDIDGLVHISQLSEDHVNRVKDVLNVGDEVEARVIKVDKVERRIGLS--VKAVNY 517

Query: 537 SEDDLVK 543
            E+ L K
Sbjct: 518 DEESLKK 524


>gi|223937065|ref|ZP_03628973.1| ribosomal protein S1 [bacterium Ellin514]
 gi|223894346|gb|EEF60799.1| ribosomal protein S1 [bacterium Ellin514]
          Length = 553

 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 162/339 (47%), Gaps = 54/339 (15%)

Query: 1085 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1144
              +G+ +   VL INKEK+ + L       G+  K  +   DN++     G  V G++  
Sbjct: 228  LKVGQDIDVVVLDINKEKERVSL-------GLKQKLAN-PWDNIEAKYPIGAKVKGKVVN 279

Query: 1145 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1204
            ++    G  V++ P + G VH TEL           + +    P       Q ++  VL 
Sbjct: 280  LVPY--GAFVELEPGVEGLVHVTEL----------SWTKRIAKPADVLKADQEIEAVVLG 327

Query: 1205 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1264
            I+R  +    + L +R        TN  D + D   PG              V+G ++N+
Sbjct: 328  INREEQ---KISLGVRQL-----ETNPWDKAMDKYPPGTR------------VKGKIRNL 367

Query: 1265 TSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            TS G FI L   LD  + +S++S    +  P +    G  V   VL ++  ++R+ V +K
Sbjct: 368  TSYGAFIELEEGLDGMIHVSDISWTRKINHPSEVLKKGDEVEAVVLEIDKANQRIAVGVK 427

Query: 1324 TSDSRTASQSEINNLSNL----HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
                    Q  ++  SN+     VGD+V GQ+ ++ S+G F+ +++  + GL H+S++SE
Sbjct: 428  --------QLAVDPWSNIDQFYKVGDLVTGQVTKLASFGAFVGLQH-EIDGLVHISQVSE 478

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
            + VD I+ + + G++V  +++K+DK  RRI L +K++ +
Sbjct: 479  ERVDKIKNVLKVGQEVTARVIKIDKSDRRIGLSIKAASY 517



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 139/297 (46%), Gaps = 54/297 (18%)

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYD 1182
            D + T  +EG  + G++  ++ G  GL+V IG   +    ++  T  KN           
Sbjct: 90   DKILTICNEGGTITGKVKAVVKG--GLLVNIGVEAFLPASQIDITTTKN----------- 136

Query: 1183 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1242
                  L+ Y  G   + KV++I++  +   ++ LS R  ++   +   S L        
Sbjct: 137  ------LASY-VGNSYEFKVVKINQERQ---NIVLSRRELIEQERNDRRSKL-------- 178

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
                 + +++P  I +G VKN+T  G FI L+  +D  + ++++S G +  P     +G+
Sbjct: 179  -----LSEMTPGDIRKGTVKNITDFGAFIDLN-GIDGLLHITDMSWGRIAHPSDILKVGQ 232

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH----VGDIVIGQIKRVESYG 1358
             +   VL +    +RV + LK        Q   N   N+     +G  V G++  +  YG
Sbjct: 233  DIDVVVLDINKEKERVSLGLK--------QKLANPWDNIEAKYPIGAKVKGKVVNLVPYG 284

Query: 1359 LFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             F+ +E   + GL HV+ELS    +     + +A ++++  +L +++E+++ISLG++
Sbjct: 285  AFVELE-PGVEGLVHVTELSWTKRIAKPADVLKADQEIEAVVLGINREEQKISLGVR 340



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 105/478 (21%), Positives = 201/478 (42%), Gaps = 85/478 (17%)

Query: 545  GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 604
            G  ++G V  V    ++V +  + +    +P   +   +     + S +   YEF +++ 
Sbjct: 99   GGTITGKVKAVVKGGLLVNIGVEAF----LPASQI--DITTTKNLASYVGNSYEF-KVVK 151

Query: 605  LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            ++ E  N++LS +  +        S   S + P  +  G V NI + G F+   G + G 
Sbjct: 152  INQERQNIVLSRRELIEQERNDRRSKLLSEMTPGDIRKGTVKNITDFGAFIDLNG-IDGL 210

Query: 664  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 723
               +    G+ A  S    VGQ +   +LD+N E  R++L LKQ   +  D         
Sbjct: 211  LHITDMSWGRIAHPSDILKVGQDIDVVVLDINKEKERVSLGLKQKLANPWDN-------- 262

Query: 724  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 783
            +E K                   + IG+ ++GKV     +G  V  E    V G +   +
Sbjct: 263  IEAK-------------------YPIGAKVKGKVVNLVPYGAFVELE--PGVEGLVHVTE 301

Query: 784  LA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK-- 833
            L+           +++   I+A +L + + E+ + L ++ +      E N   +A  K  
Sbjct: 302  LSWTKRIAKPADVLKADQEIEAVVLGINREEQKISLGVRQL------ETNPWDKAMDKYP 355

Query: 834  --KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKF--PQK 888
               R +   ++L    +  A +E+  E  L           G   VSD + T+K   P +
Sbjct: 356  PGTRVKGKIRNL---TSYGAFIEL--EEGL----------DGMIHVSDISWTRKINHPSE 400

Query: 889  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 948
                G  V A V+ +  ++   R+ + +K ++    S+  +      Y VG LV  ++T+
Sbjct: 401  VLKKGDEVEAVVLEIDKANQ--RIAVGVKQLAVDPWSNIDQF-----YKVGDLVTGQVTK 453

Query: 949  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1006
            +      +       G +HI++V++++ + ++N+    K+GQ VTAR+I K +K D +
Sbjct: 454  LASFGAFVGLQHEIDGLVHISQVSEERVDKIKNV---LKVGQEVTARVI-KIDKSDRR 507



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 151/378 (39%), Gaps = 35/378 (9%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S++ PG + KG V  +  FGA +    G+  L  +  MS   I  P    KVG ++   V
Sbjct: 180 SEMTPGDIRKGTVKNITDFGAFIDL-NGIDGLLHITDMSWGRIAHPSDILKVGQDIDVVV 238

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L +  + +R+++  K+ L      I + Y          G +  +  +G FV    GV+G
Sbjct: 239 LDINKEKERVSLGLKQKLANPWDNIEAKYPIGAK---VKGKVVNLVPYGAFVELEPGVEG 295

Query: 487 FAPRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL- 544
               +EL       +P+ +    Q ++  ++      ++I+L      T   +  + K  
Sbjct: 296 LVHVTELSWTKRIAKPADVLKADQEIEAVVLGINREEQKISLGVRQLETNPWDKAMDKYP 355

Query: 545 -GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYE 598
            G+ V G +  +T     + +      +G     H++D      + H +    V+K G E
Sbjct: 356 PGTRVKGKIRNLTSYGAFIEL-----EEGLDGMIHVSDISWTRKINHPS---EVLKKGDE 407

Query: 599 FDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 657
            + +++ +D  +  + +  K   ++    +           +V G V  +   G FV   
Sbjct: 408 VEAVVLEIDKANQRIAVGVKQLAVDPWSNIDQ---FYKVGDLVTGQVTKLASFGAFVGLQ 464

Query: 658 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 717
             + G    S+  + +   +     VGQ V + ++ ++    RI LS+K        AS+
Sbjct: 465 HEIDGLVHISQVSEERVDKIKNVLKVGQEVTARVIKIDKSDRRIGLSIKA-------ASY 517

Query: 718 MQEHFLLEEKIAMLQSSK 735
             E    E+  AML S K
Sbjct: 518 SPEQLKAEQ--AMLDSLK 533



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 9/113 (7%)

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
            LS+R  +  + +D R+        LS +  GDI  G +K +  +G FI +   +  GL H
Sbjct: 161  LSRRELIEQERNDRRSKL------LSEMTPGDIRKGTVKNITDFGAFIDLNGID--GLLH 212

Query: 1374 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            ++++S   + +   I + G+ + V +L ++KEK R+SLG+K     N  DN++
Sbjct: 213  ITDMSWGRIAHPSDILKVGQDIDVVVLDINKEKERVSLGLKQK-LANPWDNIE 264


>gi|195573449|ref|XP_002104706.1| GD18300 [Drosophila simulans]
 gi|194200633|gb|EDX14209.1| GD18300 [Drosophila simulans]
          Length = 1128

 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 148/622 (23%), Positives = 266/622 (42%), Gaps = 63/622 (10%)

Query: 10  MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 69
           M + GVV E+    L  CL       AR   A+        + +E + L  +F VG++V 
Sbjct: 75  MLVMGVVKELTATALHYCL-------ARPDAAMSG------DTSEYHDLTELFQVGRIVY 121

Query: 70  CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 129
              ++ +  K + G+  + LSL+ + ++  L  +++++G + +  V    +HGY++  G+
Sbjct: 122 GKAIKTE--KLDTGRVSLLLSLKPADVHGSLHHKSIKKGFIFSGAVAEALEHGYVIESGV 179

Query: 130 PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVVYLSSDPDTVSKCVTKDLKG 188
                F+P    A+   +     L ++ V     + T   V +  D     +   K    
Sbjct: 180 QGLQAFVPCEKPAQKLHVGQLAFLKVKTVHHDTHQSTCTCVQVEQD-----QLRIKSQNE 234

Query: 189 ISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKNDYNQHKK 247
            ++D ++PG +V  +V   L++G+  S +   F+  V+  HL N   T    + Y  ++ 
Sbjct: 235 TNLDYILPGSIVRFKVAKHLKDGLKGSIMNESFSAYVNEHHLANALDTL---DAYELNED 291

Query: 248 VNARILFVDPTSRAVGLTLNPYLLHNRAPPSH----------VKVGDIYDQSKVVRVDRG 297
            NAR+L+V P ++ V LTLN  +    A              ++VG + +++KV+R+  G
Sbjct: 292 YNARVLYVMPLTKLVYLTLNLDIKTGAAVAKDDDEEEQEVEPIQVGSVVEKAKVLRLGSG 351

Query: 298 LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEGLATGI 355
            G++L +        +Y +I    +    K E   KY   +  +VRILG+  +E L    
Sbjct: 352 -GVVLLLNKKLKGIISYGSIRGNFKGNYDKDEVLSKYGRKTKHKVRILGYDVIESLYYCS 410

Query: 356 LKASAFEGLVFTHSDVKPGMVVKG--KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 413
              +     +F   D+  G +V            G  V+  G V  +     + +F +  
Sbjct: 411 DDPNVVNEKLFCLEDINAGDLVTAKIFKKDDKIKGWSVRI-GKVNGI-----LEQFYLA- 463

Query: 414 PGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 471
           P  ++ VG  L  RVL V ++R    V+++   +   + IL+ YA A    +  G + + 
Sbjct: 464 PNVRYDVGQSLKCRVLEVNAERKICYVSNRAEYLGKGMKILTDYASAHVGNVYMGTVVRC 523

Query: 472 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531
           E     V+F NG++G   R  L      E SS +  GQ  K RI++      +I L+   
Sbjct: 524 EDTYVLVKFGNGIKGVLHRQNLK-----ENSSFFE-GQTTKFRILTR--NKDQITLTLPE 575

Query: 532 KPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVIAKGYSK-----GTIPTEHLADHLEH 585
              ++ E   V++ + +   ++V +T  A        G  K     G IP   L+DHLE 
Sbjct: 576 DKFQLGEICPVEITNALDAGLEVKITFAAEDDEEDEDGNPKLEEFVGLIPLRLLSDHLEL 635

Query: 586 ATVMKSVIKPGYEFDQLLVLDN 607
                 V   G   D   ++ N
Sbjct: 636 LHAQMRVHPAGSYTDAACIMQN 657


>gi|148658063|ref|YP_001278268.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
 gi|148570173|gb|ABQ92318.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
          Length = 514

 Score = 99.8 bits (247), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 101/185 (54%), Gaps = 11/185 (5%)

Query: 1239 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1298
            +TPG+   +++DL+P M ++G V ++   G F+ +    D  V +S +SD  +ESP    
Sbjct: 128  ETPGRP-RRVKDLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLV 186

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSD-------SRTASQSEIN--NLSNLHVGDIVIG 1349
             IG  V  RV SVEP  +R+ +T++T +        R   + E++   L+ L VGD V G
Sbjct: 187  KIGDTVKVRVKSVEPDGRRISLTMRTKERSAEPRSGRGKKKPEVDYEKLAALRVGDNVEG 246

Query: 1350 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
             +  +  +G+F+ I      GL HVSEL+E  V+  E + + G+    K+L+VD    RI
Sbjct: 247  TVTGMAPFGVFVDI-GVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAAGARI 305

Query: 1410 SLGMK 1414
            SL ++
Sbjct: 306  SLSLR 310



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 113/262 (43%), Gaps = 34/262 (12%)

Query: 465 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            G +T I  +G FV    G  G    SE+       PS +  +G  VK R+ S  P  RR
Sbjct: 146 EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRR 205

Query: 525 INLSFMMKP----------TRVSEDDLVKLGSL-----VSGVVDVVTPNAVVVYVIAKGY 569
           I+L+   K            +  E D  KL +L     V G V  + P  V V +   G 
Sbjct: 206 ISLTMRTKERSAEPRSGRGKKKPEVDYEKLAALRVGDNVEGTVTGMAPFGVFVDI---GV 262

Query: 570 SK-GTIPTEHLAD-HLEHATVMKSVIKPG--YEFDQLLVLDNESSNLLLSAKYSLINSAQ 625
            K G +    LA+  +E A   + V++ G  Y F ++L +D   + + LS + +     Q
Sbjct: 263 GKDGLVHVSELAEGRVEKA---EDVVQVGQTYTF-KVLEVDAAGARISLSLRRA--QRGQ 316

Query: 626 QLPSDASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           +L      +    ++ G +  +   G FV   +GR  G    S+  +   A +     VG
Sbjct: 317 KL----QQLEKGQILEGTISGLAPFGAFVDIGVGR-DGLVHISELSNTHVARVEDVVKVG 371

Query: 685 QSVRSNILDVNSETGRITLSLK 706
             V+  +LDV+ ++ RI+LSL+
Sbjct: 372 DRVQVRVLDVDPQSKRISLSLR 393



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 25/213 (11%)

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           D+ PGM ++G+V ++  +G  V    G   L  +  MS+  I  P    K+G  +  RV 
Sbjct: 138 DLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVK 197

Query: 430 GVK--SKRITVT---------------HKKTLVK-SKLAILSSYAEATDRLITHGWITKI 471
            V+   +RI++T                KK  V   KLA L       D +   G +T +
Sbjct: 198 SVEPDGRRISLTMRTKERSAEPRSGRGKKKPEVDYEKLAAL----RVGDNV--EGTVTGM 251

Query: 472 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531
              G FV    G  G    SEL      +   +  VGQ    +++    A  RI+LS + 
Sbjct: 252 APFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAAGARISLS-LR 310

Query: 532 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 564
           +  R  +   ++ G ++ G +  + P    V +
Sbjct: 311 RAQRGQKLQQLEKGQILEGTISGLAPFGAFVDI 343


>gi|187734759|ref|YP_001876871.1| 30S ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835]
 gi|187424811|gb|ACD04090.1| ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835]
          Length = 562

 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 215/476 (45%), Gaps = 98/476 (20%)

Query: 968  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1027
            I +VNDD+ N+V            ++ R + ++ + D ++ FL          TV E   
Sbjct: 150  IVKVNDDRKNIV------------LSRREVIEAERADQRQRFL---------ETVKE--- 185

Query: 1028 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQR 1083
                       G +V G V  + +  A + + R +   L I D ++     PSE+     
Sbjct: 186  -----------GDKVEGIVKNITDFGAFVDL-RGMDGLLHITDMSWGRVNHPSEM----- 228

Query: 1084 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1143
              HIG+++   +L +++EK+ + L L+   D   +   DI         H    V GR++
Sbjct: 229  -LHIGQSLEVVILEVDREKERVSLGLKQMTD---NPWADIER-KYPINSH----VKGRVT 279

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNIC-VSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            K+L    G  V++   + G VH +EL  +  ++ P    D  + D        Q ++  V
Sbjct: 280  KLLPY--GAFVELEKGVEGLVHVSELSWVKRITRP---SDVLKLD--------QEIEAVV 326

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            L IS   +    + L +R                  D P   +E         +++G V+
Sbjct: 327  LSISVKEQ---KISLGVRQL---------------EDNPWADIES--RFPIGTVIKGQVR 366

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1321
            N+T  G F+ L   +D  + +S++S    +  P +    G  V   VL ++   +RV + 
Sbjct: 367  NLTPYGAFVGLEEGIDGMIHVSDMSWTRKINHPSEVLKKGDEVEAIVLEIKKEDQRVSLG 426

Query: 1322 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1381
            +K  +S       IN+     VGD+V GQ+ ++ S+G F+ ++  ++ GL H+S+LSEDH
Sbjct: 427  IKQLES--DPWESIND--RFKVGDMVTGQVAKIASFGAFVNLDG-DIDGLIHISQLSEDH 481

Query: 1382 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAI 1437
            V+ ++ + + G+++  +++KVD  +RRI L +K+  +    D  Q+  E  S EA+
Sbjct: 482  VERVKDVIKVGDEITARVIKVDSIERRIGLSIKAVNY----DTEQLRRETASFEAL 533



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 140/352 (39%), Gaps = 36/352 (10%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           VK G  V+G V  +  FGA V   G +  L  +  MS   +  P +   +G  L   +L 
Sbjct: 183 VKEGDKVEGIVKNITDFGAFVDLRG-MDGLLHITDMSWGRVNHPSEMLHIGQSLEVVILE 241

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V  + +R+++  K+        I   Y   +      G +TK+  +G FV    GV+G  
Sbjct: 242 VDREKERVSLGLKQMTDNPWADIERKYPINSH---VKGRVTKLLPYGAFVELEKGVEGLV 298

Query: 489 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 545
             SEL  +     PS +  + Q ++  ++S     ++I+L           D      +G
Sbjct: 299 HVSELSWVKRITRPSDVLKLDQEIEAVVLSISVKEQKISLGVRQLEDNPWADIESRFPIG 358

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFD 600
           +++ G V  +TP    V     G  +G     H++D      + H +    V+K G E +
Sbjct: 359 TVIKGQVRNLTPYGAFV-----GLEEGIDGMIHVSDMSWTRKINHPS---EVLKKGDEVE 410

Query: 601 QLLV-LDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCFV 654
            +++ +  E   + L  K        QL SD             +V G V  I   G FV
Sbjct: 411 AIVLEIKKEDQRVSLGIK--------QLESDPWESINDRFKVGDMVTGQVAKIASFGAFV 462

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
              G + G    S+  +     +     VG  + + ++ V+S   RI LS+K
Sbjct: 463 NLDGDIDGLIHISQLSEDHVERVKDVIKVGDEITARVIKVDSIERRIGLSIK 514



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 152/351 (43%), Gaps = 68/351 (19%)

Query: 1075 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1134
            P +L E+     +GK     ++ +N ++K + L  R     I  +  D     ++T + E
Sbjct: 135  PRDLNEY-----VGKVYEFKIVKVNDDRKNIVLSRREV---IEAERADQRQRFLET-VKE 185

Query: 1135 GDIVGGRISKI--------LSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQ 1185
            GD V G +  I        L G+ GL+  I    +GRV H +E+ +I             
Sbjct: 186  GDKVEGIVKNITDFGAFVDLRGMDGLL-HITDMSWGRVNHPSEMLHI------------- 231

Query: 1186 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1245
                     GQ ++  +LE+ R       V L L+                  D P   +
Sbjct: 232  ---------GQSLEVVILEVDREKE---RVSLGLKQM---------------TDNPWADI 264

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD-GYVESPEKEFPIGKLV 1304
            E+      N  V+G V  +   G F+ L + ++  V +S LS    +  P     + + +
Sbjct: 265  ER--KYPINSHVKGRVTKLLPYGAFVELEKGVEGLVHVSELSWVKRITRPSDVLKLDQEI 322

Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
               VLS+    +++ + ++  +    +  E    S   +G ++ GQ++ +  YG F+ +E
Sbjct: 323  EAVVLSISVKEQKISLGVRQLEDNPWADIE----SRFPIGTVIKGQVRNLTPYGAFVGLE 378

Query: 1365 NTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
               + G+ HVS++S    +++   + + G++V+  +L++ KE +R+SLG+K
Sbjct: 379  E-GIDGMIHVSDMSWTRKINHPSEVLKKGDEVEAIVLEIKKEDQRVSLGIK 428



 Score = 44.3 bits (103), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 165/412 (40%), Gaps = 68/412 (16%)

Query: 597 YEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
           YEF +++ ++++  N++LS +  +    A Q       +     V G V NI + G FV 
Sbjct: 146 YEF-KIVKVNDDRKNIVLSRREVIEAERADQRQRFLETVKEGDKVEGIVKNITDFGAFVD 204

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
             G + G    +    G+    S+  ++GQS+   IL+V+ E  R++L LKQ     TD 
Sbjct: 205 LRG-MDGLLHITDMSWGRVNHPSEMLHIGQSLEVVILEVDREKERVSLGLKQ----MTDN 259

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE---- 771
            +      +E K                   + I S ++G+V +   +G  V  E+    
Sbjct: 260 PWAD----IERK-------------------YPINSHVKGRVTKLLPYGAFVELEKGVEG 296

Query: 772 --HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 829
             H     ++         ++    I+A +L ++  E+ + L +        R+   N  
Sbjct: 297 LVHVSELSWVKRITRPSDVLKLDQEIEAVVLSISVKEQKISLGV--------RQLEDNPW 348

Query: 830 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKF--P 886
           A  + R         +   +   V  +      + L E     G   VSD + T+K   P
Sbjct: 349 ADIESR-------FPIGTVIKGQVRNLTPYGAFVGLEEGID--GMIHVSDMSWTRKINHP 399

Query: 887 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAI-SETETSSSKRAKKKSSYDVGSLVQAE 945
            +    G  V A V+ +       R+ L +K + S+   S + R K      VG +V  +
Sbjct: 400 SEVLKKGDEVEAIVLEIKKEDQ--RVSLGIKQLESDPWESINDRFK------VGDMVTGQ 451

Query: 946 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
           + +I      +       G IHI+++++D    VE +    K+G  +TAR+I
Sbjct: 452 VAKIASFGAFVNLDGDIDGLIHISQLSEDH---VERVKDVIKVGDEITARVI 500



 Score = 43.9 bits (102), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 172/401 (42%), Gaps = 49/401 (12%)

Query: 63  HVGQLVSCIVLQLDDDKKEI--GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 120
           +VG++    +++++DD+K I   +R++  + R     +   LETV+EG  +   VK+I D
Sbjct: 141 YVGKVYEFKIVKVNDDRKNIVLSRREVIEAERAD--QRQRFLETVKEGDKVEGIVKNITD 198

Query: 121 HGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 176
            G  +   L    G L   +++     +    +  G  L+ V+  +DR ++ V L     
Sbjct: 199 FGAFVD--LRGMDGLLHITDMSWGRVNHPSEMLHIGQSLEVVILEVDREKERVSLGLKQM 256

Query: 177 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 236
           T +     + K   I+  V G     RV  +L  G  +       G V +  L      T
Sbjct: 257 TDNPWADIERK-YPINSHVKG-----RVTKLLPYGAFVELEKGVEGLVHVSELSWVKRIT 310

Query: 237 NWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHVKVGDIYDQS- 289
              +     +++ A +L +    + + L +     NP+  + +R P   V  G + + + 
Sbjct: 311 RPSDVLKLDQEIEAVVLSISVKEQKISLGVRQLEDNPWADIESRFPIGTVIKGQVRNLTP 370

Query: 290 --KVVRVDRGLGLLLDIP----STPVSTPAYV-TISDVAEEEVRKLEKKYKEGSCVRVRI 342
               V ++ G+  ++ +     +  ++ P+ V    D  E  V +++K+ +  S      
Sbjct: 371 YGAFVGLEEGIDGMIHVSDMSWTRKINHPSEVLKKGDEVEAIVLEIKKEDQRVS------ 424

Query: 343 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 402
           LG + LE        +  +E +   +   K G +V G+V  + SFGA V   G +  L  
Sbjct: 425 LGIKQLE--------SDPWESI---NDRFKVGDMVTGQVAKIASFGAFVNLDGDIDGLIH 473

Query: 403 LPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHK 441
           +  +SE  + +     KVG E+  RV+ V S  +RI ++ K
Sbjct: 474 ISQLSEDHVERVKDVIKVGDEITARVIKVDSIERRIGLSIK 514


>gi|291456496|ref|ZP_06595886.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
 gi|384197191|ref|YP_005582935.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
 gi|417942230|ref|ZP_12585505.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
 gi|291381773|gb|EFE89291.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
 gi|333109696|gb|AEF26712.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
 gi|339478978|gb|ABE95439.1| SSU ribosomal protein S1P [Bifidobacterium breve UCC2003]
 gi|376167330|gb|EHS86177.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
          Length = 491

 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 191/417 (45%), Gaps = 66/417 (15%)

Query: 1012 ELSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH---- 1061
            E +I+ + + +++IG++  F +  D +I     G  V G V K+D++  LL I       
Sbjct: 3    ENNIEVTKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGV 62

Query: 1062 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1121
            + ++   +    +P E+ E      +G  +    L + KE K  RL+L   +        
Sbjct: 63   IPSRELSIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWG 114

Query: 1122 DISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1180
            DI        I E D +V G + + + G  GL+V IG   +      E++ +    P  G
Sbjct: 115  DIEK------IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG 166

Query: 1181 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1240
                           Q +K K+LE+ +      +V LS R  L+   S            
Sbjct: 167  ---------------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------ 202

Query: 1241 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1300
                   +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +
Sbjct: 203  -------LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKV 254

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGL 1359
            G  V   VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+
Sbjct: 255  GDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGV 309

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            FI++E+  + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 310  FISVED-GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|206896344|ref|YP_002247530.1| 30S ribosomal protein S1 [Coprothermobacter proteolyticus DSM 5265]
 gi|206738961|gb|ACI18039.1| ribosomal protein S1 [Coprothermobacter proteolyticus DSM 5265]
          Length = 559

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 135/567 (23%), Positives = 235/567 (41%), Gaps = 71/567 (12%)

Query: 299 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG---SCVRVRILGFRHLEGLATGI 355
           GL LDI S      A++ + +   E    L ++ +EG   + V V +      +G  +  
Sbjct: 34  GLWLDIAS---KYDAFLPLDECTSE----LARQVQEGNVPTSVEVVVTRTNDDKGYISVS 86

Query: 356 LKASAFEGLVFTHSDV----KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 411
            K +A+  L     DV    K G   K K +  D  G  V    G+    P   + E   
Sbjct: 87  QKRAAYRKL---WKDVEEWEKSGESRKVKAVGADDKGVFVDLGAGILGYVPASQL-EIRF 142

Query: 412 VKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVK-SKLAILSSYAEATDRLITHGWI 468
           V+  KK+ VG  L  ++L V  KR  I +T ++ L +  K     ++    D  I  G +
Sbjct: 143 VRDTKKY-VGRSLRVKILRVNRKRNQIILTQRQVLEEEQKERAEKAWLRLKDSDIVRGHV 201

Query: 469 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           ++I   G FV   +G++GF P+ EL   P    + ++  G VV+ +++S     + + LS
Sbjct: 202 SRITDEGIFVDLGDGIEGFVPKDELDWRPIKNIAKVFRRGDVVRAKVLSVDEEKKEMVLS 261

Query: 529 FMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 585
             +    P ++  +    +G +VSG V       +++ V       G +P + ++   + 
Sbjct: 262 IRLATPNPWQLFAEKH-NVGDVVSGRVLRYLRGGLLLLV---DRVTGLVPAQEVS--WKR 315

Query: 586 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 644
              ++ + K G     ++L  D E+ +L+LS K +L +  + +  D       S   G V
Sbjct: 316 GAKVEDLYKIGDHVKAKILRFDPEAQDLILSVKEALGDPWENVERD---FPVGSKAEGTV 372

Query: 645 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
            NI + G FV     + G  PR      +  D+++   +G  V   +L +N    +ITLS
Sbjct: 373 VNITDFGVFVELAPGIEGLVPRRYVSWKRFKDINEVVNIGDQVEVVVLGINIVDRKITLS 432

Query: 705 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 764
           ++ +                EE +  +Q                 G ++ GKV      G
Sbjct: 433 MRDTRPDP-----------WEEVVKNIQP----------------GQLVRGKVVTIIPQG 465

Query: 765 VVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVF 817
           V V   +   V GFI   QL+          V  G  I A ++ + +  R + LS+K + 
Sbjct: 466 VFVEIADG--VEGFIHISQLSIRRVDDPRDAVSEGDEIVAKVIGIDEERRRISLSVKAIH 523

Query: 818 IDRFREANSNRQAQKKKRKREASKDLG 844
           +D+ RE   +  +Q+ + K   S  LG
Sbjct: 524 VDKEREELQDFLSQQGEDKFTLSDVLG 550



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 164/389 (42%), Gaps = 57/389 (14%)

Query: 1042 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1101
            V G+V ++ +E   + +   ++   F+     +   ++   + F  G  V   VLS+++E
Sbjct: 197  VRGHVSRITDEGIFVDLGDGIEG--FVPKDELDWRPIKNIAKVFRRGDVVRAKVLSVDEE 254

Query: 1102 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE----GDIVGGRISKILSGVGGLVVQIG 1157
            KK + L +R            ++  N      E    GD+V GR+ + L G   L+V   
Sbjct: 255  KKEMVLSIR------------LATPNPWQLFAEKHNVGDVVSGRVLRYLRGGLLLLVDRV 302

Query: 1158 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1217
              L      +  +   V D               Y  G  VK K+L      +      L
Sbjct: 303  TGLVPAQEVSWKRGAKVEDL--------------YKIGDHVKAKILRFDPEAQDLI---L 345

Query: 1218 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
            S++ +L                 P +++E+  D       +G V N+T  G F+ L+  +
Sbjct: 346  SVKEALG---------------DPWENVER--DFPVGSKAEGTVVNITDFGVFVELAPGI 388

Query: 1278 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1337
            +  V    +S    +   +   IG  V   VL +  + +++  TL   D+R     E+  
Sbjct: 389  EGLVPRRYVSWKRFKDINEVVNIGDQVEVVVLGINIVDRKI--TLSMRDTRPDPWEEV-- 444

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            + N+  G +V G++  +   G+F+ I +  + G  H+S+LS   VD+       G+++  
Sbjct: 445  VKNIQPGQLVRGKVVTIIPQGVFVEIAD-GVEGFIHISQLSIRRVDDPRDAVSEGDEIVA 503

Query: 1398 KILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            K++ +D+E+RRISL +K+ +   + + LQ
Sbjct: 504  KVIGIDEERRRISLSVKAIHVDKEREELQ 532



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 133/341 (39%), Gaps = 29/341 (8%)

Query: 199 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT 258
           +V   V  I + G+ +       G V    L +  P  N    + +   V A++L VD  
Sbjct: 196 IVRGHVSRITDEGIFVDLGDGIEGFVPKDEL-DWRPIKNIAKVFRRGDVVRAKVLSVDEE 254

Query: 259 SRAVGLTL-----NPYLL----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 309
            + + L++     NP+ L    HN       +V        ++ VDR  GL   +P+  V
Sbjct: 255 KKEMVLSIRLATPNPWQLFAEKHNVGDVVSGRVLRYLRGGLLLLVDRVTGL---VPAQEV 311

Query: 310 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 369
           S      + D+           YK G  V+ +IL F          +K +  +       
Sbjct: 312 SWKRGAKVEDL-----------YKIGDHVKAKILRFDPEAQDLILSVKEALGDPWENVER 360

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           D   G   +G V+ +  FG  V+   G++ L P  ++S        +   +G ++   VL
Sbjct: 361 DFPVGSKAEGTVVNITDFGVFVELAPGIEGLVPRRYVSWKRFKDINEVVNIGDQVEVVVL 420

Query: 430 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
           G+    ++IT++ + T       ++ +        +  G +  I   G FV   +GV+GF
Sbjct: 421 GINIVDRKITLSMRDTRPDPWEEVVKNIQPGQ---LVRGKVVTIIPQGVFVEIADGVEGF 477

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
              S+L +    +P      G  +  +++      RRI+LS
Sbjct: 478 IHISQLSIRRVDDPRDAVSEGDEIVAKVIGIDEERRRISLS 518



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 154/380 (40%), Gaps = 62/380 (16%)

Query: 75  LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG 134
           L++++KE  + K WL L+ S + +G              +V  I D G  +  G     G
Sbjct: 176 LEEEQKERAE-KAWLRLKDSDIVRG--------------HVSRITDEGIFVDLG-DGIEG 219

Query: 135 FLPRNNL----AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS 190
           F+P++ L     +N     + G +++  V S+D  +K + LS       +  T +   + 
Sbjct: 220 FVPKDELDWRPIKNIAKVFRRGDVVRAKVLSVDEEKKEMVLSI------RLATPNPWQLF 273

Query: 191 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND------YNQ 244
            +    G +VS RV   L    +L  +   TG V            +WK        Y  
Sbjct: 274 AEKHNVGDVVSGRVLRYLRG-GLLLLVDRVTGLV-------PAQEVSWKRGAKVEDLYKI 325

Query: 245 HKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHVK----VGDIYDQSKVVRVD 295
              V A+IL  DP ++ + L++     +P+    R  P   K    V +I D    V + 
Sbjct: 326 GDHVKAKILRFDPEAQDLILSVKEALGDPWENVERDFPVGSKAEGTVVNITDFGVFVELA 385

Query: 296 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 355
            G+  L  +P   VS   +  I++V              G  V V +LG   ++   T  
Sbjct: 386 PGIEGL--VPRRYVSWKRFKDINEVV-----------NIGDQVEVVVLGINIVDRKITLS 432

Query: 356 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 415
           ++ +  +       +++PG +V+GKV+ +   G  V+   GV+    +  +S   +  P 
Sbjct: 433 MRDTRPDPWEEVVKNIQPGQLVRGKVVTIIPQGVFVEIADGVEGFIHISQLSIRRVDDPR 492

Query: 416 KKFKVGAELVFRVLGVKSKR 435
                G E+V +V+G+  +R
Sbjct: 493 DAVSEGDEIVAKVIGIDEER 512


>gi|171743205|ref|ZP_02919012.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC
            27678]
 gi|283455814|ref|YP_003360378.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
 gi|306823050|ref|ZP_07456426.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
 gi|309801254|ref|ZP_07695383.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
 gi|171278819|gb|EDT46480.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27678]
 gi|283102448|gb|ADB09554.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
 gi|304553682|gb|EFM41593.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
 gi|308222143|gb|EFO78426.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
          Length = 490

 Score = 99.0 bits (245), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 188/411 (45%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V KVD++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 246 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 300
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 301 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 357
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 418 FKVGAELVFRVLGV--KSKRITVTHKKT 443
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 41.6 bits (96), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|212716121|ref|ZP_03324249.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
            16992 = JCM 1194]
 gi|212661488|gb|EEB22063.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
            16992 = JCM 1194]
          Length = 491

 Score = 99.0 bits (245), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 188/411 (45%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V KVD++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFGDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QTIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQTIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFGDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQTIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|225351875|ref|ZP_03742898.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
            pseudocatenulatum DSM 20438 = JCM 1200]
 gi|225157122|gb|EEG70461.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
            pseudocatenulatum DSM 20438 = JCM 1200]
          Length = 491

 Score = 99.0 bits (245), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 190/411 (46%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V KVD++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +              
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVR------------- 159

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
              LS Y  GQ +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 160  -DLSPYI-GQTIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQTIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQTIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|310287294|ref|YP_003938552.1| 30S ribosomal protein S1 [Bifidobacterium bifidum S17]
 gi|309251230|gb|ADO52978.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17]
          Length = 490

 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 191/411 (46%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +              
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVR------------- 159

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
              LS Y  GQ +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 160  -DLSPYI-GQKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ ++GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKSGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKSGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE       SG  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKSGEEVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 246 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 300
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 301 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 357
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 418 FKVGAELVFRVLGV--KSKRITVTHKKT 443
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKSGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKSGEEVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|119025692|ref|YP_909537.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154487492|ref|ZP_02028899.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis
            L2-32]
 gi|118765276|dbj|BAF39455.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154084010|gb|EDN83055.1| putative ribosomal protein S1 [Bifidobacterium adolescentis L2-32]
          Length = 490

 Score = 98.2 bits (243), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 188/411 (45%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V KVD++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 42.0 bits (97), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 246 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 300
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 301 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 357
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 418 FKVGAELVFRVLGV--KSKRITVTHKKT 443
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|311064142|ref|YP_003970867.1| 30S ribosomal protein S1 [Bifidobacterium bifidum PRL2010]
 gi|313139998|ref|ZP_07802191.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
 gi|390936652|ref|YP_006394211.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
 gi|310866461|gb|ADP35830.1| RpsA SSU ribosomal protein S1P [Bifidobacterium bifidum PRL2010]
 gi|313132508|gb|EFR50125.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
 gi|389890265|gb|AFL04332.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
          Length = 490

 Score = 98.2 bits (243), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 188/411 (45%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 42.0 bits (97), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 246 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 300
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 301 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 357
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 418 FKVGAELVFRVLGV--KSKRITVTHKKT 443
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 41.6 bits (96), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|421735863|ref|ZP_16174741.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
 gi|407296849|gb|EKF16353.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
          Length = 490

 Score = 98.2 bits (243), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 190/411 (46%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +              
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVR------------- 159

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
              LS Y  GQ +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 160  -DLSPYI-GQKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 147/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 LPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +     S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 246 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 300
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 301 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 357
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 418 FKVGAELVFRVLGV--KSKRITVTHKKT 443
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 41.2 bits (95), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|410865869|ref|YP_006980480.1| 30S ribosomal protein S1 [Propionibacterium acidipropionici ATCC
            4875]
 gi|410822510|gb|AFV89125.1| 30S ribosomal protein S1 [Propionibacterium acidipropionici ATCC
            4875]
          Length = 503

 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 188/416 (45%), Gaps = 64/416 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            +TV ++GS   F    D +I     G  VTG V KVD +  LL I       + ++   +
Sbjct: 30   VTVDDLGSPEAFMAAVDATIKYFNDGDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 89

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+        +G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 90   KHDVDPFEV------VQVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 136

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 137  KIKDEDGVVNGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 185

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S    +              ++
Sbjct: 186  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRHNF-------------LQ 223

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 224  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 282

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 283  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 336

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1424
             GL HVSEL+E HVD  E I   G++V VKI+ +D ++RRISL +K +    D D+
Sbjct: 337  EGLVHVSELAERHVDLPEQIVSVGQEVMVKIIDIDLDRRRISLSLKQANEGIDVDS 392



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 153/349 (43%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + P   +S    V P +  +VG E+   V   + 
Sbjct: 55  GDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVQVGDEIEALVQQKED 114

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +     + +G + ++ K G  V    G++GF P S
Sbjct: 115 KEGRLILSKKRAQYERAWGTIEKIKDEDG--VVNGTVIEVVKGGLIVDI--GLRGFLPAS 170

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 171 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRHNFLQQLQ 226

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 227 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 281

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 282 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 336

Query: 661 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  + +  DL  +   VGQ V   I+D++ +  RI+LSLKQ+
Sbjct: 337 EGLVHVSELAE-RHVDLPEQIVSVGQEVMVKIIDIDLDRRRISLSLKQA 384


>gi|312133007|ref|YP_004000346.1| rpsa [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773993|gb|ADQ03481.1| RpsA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 491

 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 195/426 (45%), Gaps = 71/426 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +     +D++
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA-----SDSV 369

Query: 1426 QMSSEE 1431
              +SE+
Sbjct: 370  DPASED 375



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQASDSVDPAS 373



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|261338679|ref|ZP_05966563.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
 gi|270276304|gb|EFA22158.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
          Length = 495

 Score = 97.8 bits (242), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 174/384 (45%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 36   GDLVEGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVE------VGDTI--E 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1153
             L + KE K  RL+L   +        DI        I E D +V G + + + G  GL+
Sbjct: 88   ALVVTKEDKEGRLILSKKRAQYERAWGDIEK------IKEDDGVVEGTVIEAVKG--GLI 139

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V IG   +      E++ +    P  G               Q +K K+LE+ +      
Sbjct: 140  VDIGLRGFLPASLVEMRRVRDLSPYIG---------------QKIKAKILELDKNRN--- 181

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
            +V LS R  L+   S                   +  L    I +G V ++ + G F+ L
Sbjct: 182  NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDL 228

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++LK +      + 
Sbjct: 229  G-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QED 282

Query: 1334 EINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
                 +  HV G IV G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ + G
Sbjct: 283  PWQRFARTHVPGQIVRGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKPG 341

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            E+V VK++ VD ++RRISL +K +
Sbjct: 342  EEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G+V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKE--DDGVVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVRGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 147/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEDDGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G ++ GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVRGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 246 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 300
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 301 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 357
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
              ++    TH    PG +V+GKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 418 FKVGAELVFRVLGV--KSKRITVTHKKT 443
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 41.6 bits (96), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|56963639|ref|YP_175370.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
 gi|56909882|dbj|BAD64409.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
          Length = 384

 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 186/385 (48%), Gaps = 60/385 (15%)

Query: 1037 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1096
            S+G  VTG V KV+++ A + +        F +D     SEL       H+ KA    VL
Sbjct: 16   SVGDIVTGKVTKVEDKQAFVDVG-------FKVDGIVPISELS----SLHVEKA--SDVL 62

Query: 1097 SINKEKKLLRLVLRPFQDG---ISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1151
            S++ E   L L +   +D    +S K V      + ++    +G+++   +++++ G  G
Sbjct: 63   SVDDE---LELKVTKVEDDELILSKKAVQAEKAWEQLEEAYEKGEVIEAEVAEVVKG--G 117

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
            LVV +G  + G +            P S  +    +  S Y +G+ ++ KV EI +    
Sbjct: 118  LVVDVG--VRGFI------------PASLVERHYVEDFSDY-KGKPLRLKVTEIDKDNNK 162

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
                 LS R+ LD            +++   K +  +  LS   +V+G V+ +TS G F+
Sbjct: 163  LI---LSQRAVLD-----------AEIEEKKKQV--LHSLSTGDVVEGKVQRLTSFGAFV 206

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
             +   +D  V +S ++   VE P      G+ V  +VLSV+P S+RV +++K      A 
Sbjct: 207  DVG-GVDGLVHISQIAHERVEHPSDVLSEGQEVRVKVLSVDPDSERVSLSIK---EMLAG 262

Query: 1332 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1391
              E N  S    GDIV G +KR+ S+G F+ I    + GL H+S++S+ H+   + +   
Sbjct: 263  PWE-NIESKFSAGDIVTGTVKRLVSFGAFVEI-APGVEGLVHISQISKRHIGTPQEVLEE 320

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSS 1416
            G++V+ K+L+V +  RR+SL ++ +
Sbjct: 321  GQQVQAKVLEVSEADRRVSLSIREA 345



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G VV+GKV  + SFGA V   GGV  L  +  ++   +  P      G E+  +VL V  
Sbjct: 189 GDVVEGKVQRLTSFGAFVDV-GGVDGLVHISQIAHERVEHPSDVLSEGQEVRVKVLSVDP 247

Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
            S+R++++ K+ L      I S ++ A D  I  G + ++   G FV    GV+G    S
Sbjct: 248 DSERVSLSIKEMLAGPWENIESKFS-AGD--IVTGTVKRLVSFGAFVEIAPGVEGLVHIS 304

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++       P  +   GQ V+ +++    A RR++LS 
Sbjct: 305 QISKRHIGTPQEVLEEGQQVQAKVLEVSEADRRVSLSI 342



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 151/403 (37%), Gaps = 91/403 (22%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G +TK+E    FV     V G  P SEL         S  HV +     ++S     
Sbjct: 20  IVTGKVTKVEDKQAFVDVGFKVDGIVPISEL---------SSLHVEKA--SDVLS----- 63

Query: 523 RRINLSFMMKPTRVSEDDLV-------------------KLGSLVSGVVDVVTPNAVVVY 563
             ++    +K T+V +D+L+                   + G ++   V  V    +VV 
Sbjct: 64  --VDDELELKVTKVEDDELILSKKAVQAEKAWEQLEEAYEKGEVIEAEVAEVVKGGLVVD 121

Query: 564 VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS 623
           V  +G+   ++   H  +           +K       +  +D +++ L+LS +  L   
Sbjct: 122 VGVRGFIPASLVERHYVEDFSDYKGKPLRLK-------VTEIDKDNNKLILSQRAVLDAE 174

Query: 624 AQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 682
            ++      H +    VV G V  +   G FV  +G + G    S+    +    S    
Sbjct: 175 IEEKKKQVLHSLSTGDVVEGKVQRLTSFGAFVD-VGGVDGLVHISQIAHERVEHPSDVLS 233

Query: 683 VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 742
            GQ VR  +L V+ ++ R++LS+K+      +         +E K               
Sbjct: 234 EGQEVRVKVLSVDPDSERVSLSIKEMLAGPWEN--------IESK--------------- 270

Query: 743 WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG-------ATVESGSVI 795
               F  G ++ G V     FG  V       V G +   Q++          +E G  +
Sbjct: 271 ----FSAGDIVTGTVKRLVSFGAFVEI--APGVEGLVHISQISKRHIGTPQEVLEEGQQV 324

Query: 796 QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKRE 838
           QA +L+V++A+R V LS+        REA S  Q +K+ R  E
Sbjct: 325 QAKVLEVSEADRRVSLSI--------REA-SEEQERKETRAYE 358


>gi|296453875|ref|YP_003661018.1| RNA-binding S1 domain-containing protein [Bifidobacterium longum
            subsp. longum JDM301]
 gi|384199820|ref|YP_005585563.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC
            15697 = JCM 1222]
 gi|296183306|gb|ADH00188.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. longum
            JDM301]
 gi|320458772|dbj|BAJ69393.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC
            15697 = JCM 1222]
          Length = 491

 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEAVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEAVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEAVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|213692621|ref|YP_002323207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC
            15697 = JCM 1222]
 gi|213524082|gb|ACJ52829.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. infantis
            ATCC 15697 = JCM 1222]
          Length = 491

 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEAVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEAVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEAVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|156741406|ref|YP_001431535.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
            DSM 13941]
 gi|156232734|gb|ABU57517.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 503

 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 10/186 (5%)

Query: 1238 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1297
             + P     +++DL+P M ++G V ++   G F+ +    D  V +S +SD  +ESP   
Sbjct: 123  AEAPTGRPRRVKDLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDL 182

Query: 1298 FPIGKLVAGRVLSVEPLSKRVEVTLKTSD-------SRTASQSEI--NNLSNLHVGDIVI 1348
              IG  V  RV SVEP  +R+ +T++  +        R   + E+  + L+ L VGD V 
Sbjct: 183  VKIGDTVKVRVKSVEPDGRRISLTMRMKERGAEPRSGRGKKKPEVDYDKLAALRVGDNVE 242

Query: 1349 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1408
            G +  +  +G+F+ I      GL HVSEL+E  V+  E + + G+    K+L+VD E  R
Sbjct: 243  GTVTGLAPFGVFVDI-GVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAEGAR 301

Query: 1409 ISLGMK 1414
            ISL ++
Sbjct: 302  ISLSLR 307



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 116/262 (44%), Gaps = 34/262 (12%)

Query: 465 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            G +T I  +G FV    G  G    SE+       PS +  +G  VK R+ S  P  RR
Sbjct: 143 EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRR 202

Query: 525 INLSFMM-------------KPTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGY 569
           I+L+  M             K   V  D L  +++G  V G V  + P  V V +   G 
Sbjct: 203 ISLTMRMKERGAEPRSGRGKKKPEVDYDKLAALRVGDNVEGTVTGLAPFGVFVDI---GV 259

Query: 570 SK-GTIPTEHLAD-HLEHATVMKSVIKPG--YEFDQLLVLDNESSNLLLSAKYSLINSAQ 625
            K G +    LA+  +E A   + V++ G  Y F ++L +D E + + LS + +     Q
Sbjct: 260 GKDGLVHVSELAEGRVEKA---EDVVQVGQTYTF-KVLEVDAEGARISLSLRRA--QRGQ 313

Query: 626 QLPSDASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           +L      +    ++ G +  +   G FV   +GR  G    S+  + + A +     VG
Sbjct: 314 KL----QQLEKGQILEGTISGLAPFGAFVDIGVGR-DGLVHISELSNARVARVEDAVKVG 368

Query: 685 QSVRSNILDVNSETGRITLSLK 706
             V+  +LDV+ ++ RI+LSL+
Sbjct: 369 DKVQVRVLDVDPQSKRISLSLR 390



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 27/263 (10%)

Query: 917  KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 976
            +A +E  T   +R K  +    G  ++  +T I    + +  G+G  G +HI+E++D + 
Sbjct: 120  QAPAEAPTGRPRRVKDLAP---GMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTR- 175

Query: 977  NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD- 1035
              +E+     KIG TV  R+  KS +PD ++  L     +      S  G K    + D 
Sbjct: 176  --IESPSDLVKIGDTVKVRV--KSVEPDGRRISLTMRMKERGAEPRSGRGKKKPEVDYDK 231

Query: 1036 ---VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1092
               + +G  V G V  +      + I       + +  S      +++ +    +G+  T
Sbjct: 232  LAALRVGDNVEGTVTGLAPFGVFVDIGVGKDGLVHV--SELAEGRVEKAEDVVQVGQTYT 289

Query: 1093 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1152
              VL ++ E   + L LR  Q G            +Q  + +G I+ G IS +     G 
Sbjct: 290  FKVLEVDAEGARISLSLRRAQRG----------QKLQQ-LEKGQILEGTISGLAP--FGA 336

Query: 1153 VVQIGPHLYGRVHFTELKNICVS 1175
             V IG    G VH +EL N  V+
Sbjct: 337  FVDIGVGRDGLVHISELSNARVA 359


>gi|403220619|dbj|BAM38752.1| uncharacterized protein TOT_010001225 [Theileria orientalis strain
           Shintoku]
          Length = 663

 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 145/567 (25%), Positives = 248/567 (43%), Gaps = 79/567 (13%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
           ++++ G  + G VA V    L I +   + G A+ ++  D +++++   +EDNL  + F 
Sbjct: 62  ESLNPGSLVLGSVALVTPFGLRIHIFNNIVGFAKYSELFD-LVESKSGGSEDNL-ASPFS 119

Query: 64  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
           VG  V C VL       E+    + LSL+ SL+ K L    +  G++L A V S EDHG+
Sbjct: 120 VGSNVVCYVL-------EVYHSSVALSLKPSLVNKNLRPNNLFAGLLLPATVLSQEDHGF 172

Query: 124 ILHFGL---PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT-VS 179
            L F +    + +GF+  +   E S   VK   + +    S   T  V+  S +P+  + 
Sbjct: 173 TLSFNVNLKSAISGFVMYD---EKSREGVKNEFIKRYPPSS---TAHVIVNSMNPERGLV 226

Query: 180 KCV-------TKDLKGISI-DLLVPGMMVSTRVQSI----LEN-------GVMLSFLTYF 220
           KCV         DL   ++ D+L PG++++  V  +     EN       G  +  L   
Sbjct: 227 KCVWPWEYKTPMDLHTATVFDVLKPGLLLTAEVSEVHRLKCENSYKQPLSGYTVKCLGSL 286

Query: 221 TGTVDIFH-LQNTFPTTNWKN---DYNQHKKVN----ARILFVDPTSRAVGLTLNPYLLH 272
           T  V   H L++  P  + +    + +  K+VN    AR+++VD  +R + ++L   LL 
Sbjct: 287 TAFVSPLHSLESYKPADSAEGSLGNLDDCKEVNDRAEARLIYVDFEARKLYVSLQWQLLK 346

Query: 273 NRAPP--SHVKVGDIYDQSKVVR-VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-- 327
            R P   +H  +       KVVR +  GL L  +    P ST  + +I DV +++  K  
Sbjct: 347 WRGPLGLAHKNLKHTVMSCKVVRSLSSGLVLEHEEEKEP-STLFFCSIKDVVDDKSLKPA 405

Query: 328 ---LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 384
                  Y  G+    R+L F +L  L    LK S  +    +  +     +V+GK + +
Sbjct: 406 TILTSSTYSVGTVHDCRVLDFNYLTRLTHVALKESVIKEKYASAFEFSASELVRGKTVKL 465

Query: 385 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 442
            + GAIVQ    V    P+ H+++    K  + F+ G  +  RVL       R+ +T K 
Sbjct: 466 VNSGAIVQLSSLVYGKVPVGHLTDVPPTKVPENFQTGRNMRLRVLRFDHARNRLVLTAKP 525

Query: 443 TLVK-----SKLAILSSYAEATDRLIT---HGWITKIEKHGCFVRFYNGVQGFAPR---- 490
           +LV      ++   L    + T  +I      ++ + +     ++FY  +Q +  R    
Sbjct: 526 SLVNDTDPAARFDHLHVGKKLTGYIINMKEKNYMDEKQNERIVIKFYGDLQTYMDRHEVE 585

Query: 491 --SELGLDPGCEPSSMYHVGQVVKCRI 515
              ELG+D             VVKC +
Sbjct: 586 RAEELGVD--------LKTDSVVKCAV 604


>gi|317481889|ref|ZP_07940916.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
 gi|316916680|gb|EFV38075.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
          Length = 491

 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|227546158|ref|ZP_03976207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum ATCC
            55813]
 gi|239621800|ref|ZP_04664831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis CCUG
            52486]
 gi|322688831|ref|YP_004208565.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
            157F]
 gi|322690819|ref|YP_004220389.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
            1217]
 gi|384201809|ref|YP_005587556.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
            91563]
 gi|419846596|ref|ZP_14369831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 1-6B]
 gi|419850464|ref|ZP_14373454.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
 gi|419853759|ref|ZP_14376564.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 2-2B]
 gi|419855926|ref|ZP_14378671.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
 gi|227213139|gb|EEI81011.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC
            55813]
 gi|239514991|gb|EEQ54858.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis CCUG
            52486]
 gi|291517108|emb|CBK70724.1| SSU ribosomal protein S1P [Bifidobacterium longum subsp. longum F8]
 gi|320455675|dbj|BAJ66297.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
            1217]
 gi|320460167|dbj|BAJ70787.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
            157F]
 gi|338754816|gb|AEI97805.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
            91563]
 gi|386406831|gb|EIJ21825.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 2-2B]
 gi|386408991|gb|EIJ23869.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
 gi|386413633|gb|EIJ28225.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 1-6B]
 gi|386414587|gb|EIJ29140.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
          Length = 491

 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|23465561|ref|NP_696164.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
 gi|189439608|ref|YP_001954689.1| 30S ribosomal protein S1 [Bifidobacterium longum DJO10A]
 gi|23326226|gb|AAN24800.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
 gi|189428043|gb|ACD98191.1| Ribosomal protein S1 [Bifidobacterium longum DJO10A]
          Length = 491

 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|384135335|ref|YP_005518049.1| RNA binding S1 domain-containing protein [Alicyclobacillus
            acidocaldarius subsp. acidocaldarius Tc-4-1]
 gi|339289420|gb|AEJ43530.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius subsp.
            acidocaldarius Tc-4-1]
          Length = 392

 Score = 97.1 bits (240), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 167/391 (42%), Gaps = 56/391 (14%)

Query: 1030 LFEECDVSIGQRVTGYVYKVDNEWALLTISR----HLKAQLFILDSAYEPSELQEFQRRF 1085
            +  +  V  G  VTG V  VD+    + +      H+  Q         PS++       
Sbjct: 15   MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDV------V 68

Query: 1086 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1145
             +G  VT  VL ++ E   + L  R  +   +        + MQ  +  G+ +   I  +
Sbjct: 69   SVGSTVTAQVLKVDMESGHVTLSKRRAEQASA-------WERMQRLLESGEPIEVEIRDV 121

Query: 1146 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
            + G  GLV  +G   +               P S  D    + L  + +GQ ++ KV+E+
Sbjct: 122  VKG--GLVADVGVRAF--------------IPASLVDRHFVENLEQF-KGQKLRAKVIEV 164

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
                       LS R+ L+  S   +  L              E+L P  +++G V+ +T
Sbjct: 165  DPQKNKLI---LSRRAVLEEESEARARKL-------------FEELKPGDVIEGTVQRLT 208

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
              G F+ +    D  V +S LS  +V  P +    G  V  RVL V+P + R+ +++K +
Sbjct: 209  DFGAFVDVG-GADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAA 267

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
                  +           GD+V G ++RV  +G F+ +    L GL HVS++S + VD  
Sbjct: 268  ----LPEPWETYAHEFQPGDVVQGVVRRVLDFGAFVEL-RPGLEGLVHVSQISNERVDKP 322

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + + G++V V++L VD E++RISL M+ S
Sbjct: 323  SDVLQPGQEVTVRVLSVDPERKRISLSMRDS 353



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 147/359 (40%), Gaps = 33/359 (9%)

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
           + T + V+ G VV G+V AVD  G  V  P G +       +S      P     VG+ +
Sbjct: 15  MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTV 74

Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVR 479
             +VL V  +   VT  K     + A  +S  E   RL+  G   ++E     K G    
Sbjct: 75  TAQVLKVDMESGHVTLSK-----RRAEQASAWERMQRLLESGEPIEVEIRDVVKGGLVAD 129

Query: 480 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
              GV+ F P S +  D     +     GQ ++ +++   P   ++ LS        SE 
Sbjct: 130 V--GVRAFIPASLV--DRHFVENLEQFKGQKLRAKVIEVDPQKNKLILSRRAVLEEESEA 185

Query: 540 DLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 592
              KL      G ++ G V  +T     V V   G + G +    L+  H+ H +    V
Sbjct: 186 RARKLFEELKPGDVIEGTVQRLTDFGAFVDV---GGADGLVHISELSFSHVNHPS---EV 239

Query: 593 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 651
           ++ G     ++L +D E+  + LS K +L    +     A    P  VV G V  +++ G
Sbjct: 240 VREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETY---AHEFQPGDVVQGVVRRVLDFG 296

Query: 652 CFVRFLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
            FV     L G    S+ +  +R D  S     GQ V   +L V+ E  RI+LS++ S 
Sbjct: 297 AFVELRPGLEGLVHVSQ-ISNERVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSS 354



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 154/363 (42%), Gaps = 36/363 (9%)

Query: 96  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGID----VK 150
           L + L+   V+EG V+T  V +++DHG  +   LP  + G +    L+   G      V 
Sbjct: 12  LREMLTDAAVREGDVVTGEVTAVDDHGVTV--ALPHGYEGHISPQELSAVPGTHPSDVVS 69

Query: 151 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 210
            G  +   V  +D     V LS      +    +  +     LL  G  +   ++ +++ 
Sbjct: 70  VGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQR-----LLESGEPIEVEIRDVVKG 124

Query: 211 GVM--LSFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 267
           G++  +    +   + VD   ++N         +  + +K+ A+++ VDP    + L+  
Sbjct: 125 GLVADVGVRAFIPASLVDRHFVENL--------EQFKGQKLRAKVIEVDPQKNKLILSRR 176

Query: 268 PYL-----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
             L        R     +K GD+ + +     D   G  +D+          V IS+++ 
Sbjct: 177 AVLEEESEARARKLFEELKPGDVIEGTVQRLTD--FGAFVDVGGAD----GLVHISELSF 230

Query: 323 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
             V    +  +EG  V+VR+L      G  +  +KA+  E       + +PG VV+G V 
Sbjct: 231 SHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVR 290

Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 440
            V  FGA V+   G++ L  +  +S   + KP    + G E+  RVL V  + KRI+++ 
Sbjct: 291 RVLDFGAFVELRPGLEGLVHVSQISNERVDKPSDVLQPGQEVTVRVLSVDPERKRISLSM 350

Query: 441 KKT 443
           + +
Sbjct: 351 RDS 353



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 156/390 (40%), Gaps = 63/390 (16%)

Query: 939  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
            G +V  E+T +    + +    G+ G I   E++        ++ S   +G TVTA+++ 
Sbjct: 24   GDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVS---VGSTVTAQVLK 80

Query: 999  ---KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1055
               +S    + K    + S    M  + E G  +  E  DV  G  V     +     +L
Sbjct: 81   VDMESGHVTLSKRRAEQASAWERMQRLLESGEPIEVEIRDVVKGGLVADVGVRAFIPASL 140

Query: 1056 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1115
              + RH     F+         L++F+     G+ +   V+ ++ +K  L L  R     
Sbjct: 141  --VDRH-----FV-------ENLEQFK-----GQKLRAKVIEVDPQKNKLILSRR----A 177

Query: 1116 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1175
            + ++  +     +   +  GD++ G + ++     G  V +G    G VH +EL    V+
Sbjct: 178  VLEEESEARARKLFEELKPGDVIEGTVQRLTDF--GAFVDVG-GADGLVHISELSFSHVN 234

Query: 1176 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1235
             P     EG             VK +VL +         + LS++++L     T +    
Sbjct: 235  HPSEVVREGDR-----------VKVRVLRVDPE---AGRISLSIKAALPEPWETYA---- 276

Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
                          +  P  +VQG V+ V   G F+ L   L+  V +S +S+  V+ P 
Sbjct: 277  -------------HEFQPGDVVQGVVRRVLDFGAFVELRPGLEGLVHVSQISNERVDKPS 323

Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
                 G+ V  RVLSV+P  KR+ ++++ S
Sbjct: 324  DVLQPGQEVTVRVLSVDPERKRISLSMRDS 353


>gi|407044026|gb|EKE42318.1| S1 RNA binding domain containing protein, partial [Entamoeba
           nuttalli P19]
          Length = 1192

 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 194/438 (44%), Gaps = 26/438 (5%)

Query: 291 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 350
           + ++D  +G+   I  T      +++   + +E    + K+++ GS  + R++ +   +G
Sbjct: 86  ISKIDENVGI---IGETEDKEEVFLSKKQIKDESCSDIPKEFQIGSTHKGRVMYYSAFDG 142

Query: 351 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
                 + S       +  D+K GM+++G +  V+  G IV+    +   C   +  +  
Sbjct: 143 YCGITTRESILSDKYQSIFDIKSGMIIEGTIKEVNEKGIIVKIGEKIYGFCDKINSGDIP 202

Query: 411 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
           I      FK   +  FRVL V ++   I +THK+TL+K+   I+++  E     IT G +
Sbjct: 203 IEDLQSVFKKEQKSKFRVLTVNNRNNSIYLTHKRTLMKATTPIITTIEETELNTITFGTV 262

Query: 469 TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
           T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 263 TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKVRIISFDKQLLLCSL 318

Query: 528 SFMMKPTRVSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLAD 581
           +   +     + + V    ++G +  G+V V     +++  I  G  +    +P   + D
Sbjct: 319 NLFPEENVPEKYEDVSRHFEVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVID 377

Query: 582 HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 641
             E   + K +I+ G    + L+L N+   ++++ K SLI+  +++    S        +
Sbjct: 378 GDEGQDIPK-MIRNGTILKECLLLKNQMGQMVITTKKSLISLRKKIGKFNSKEEMTVGKY 436

Query: 642 -GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 700
            GYV  I    CF+ F   +T    R    D     + +   VGQ+V   +        +
Sbjct: 437 IGYVSKIKGKYCFISFYNGITILCYRMNVSD-TNLPIEEVLEVGQTVYGYL------NKK 489

Query: 701 ITLSLKQSCCSSTDASFM 718
              SLK+S   S    FM
Sbjct: 490 GIFSLKESSVGSIKEEFM 507



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 135/312 (43%), Gaps = 44/312 (14%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            I EG+I+ G +    +    + V I  +  G +H+ ++ N  V +P          P   
Sbjct: 834  IKEGEIIVGEVIGNNTKELKIKVLIKGNRIGYIHYCDISN--VFNPF---------PRDY 882

Query: 1192 YDEGQFVKCKVL----EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
               G+++   VL    EIS ++R  +     L+ + D +       + T + T       
Sbjct: 883  LQNGKYINMYVLSNKPEISCSMRKEY-----LKEAYDEIFPPLIGGVQTRIVTK------ 931

Query: 1248 IEDLSPNMIVQGYV-KNVTSKGCFIMLSRKLDAKVLLSNLSDG---YVESPEKEFPIGKL 1303
             +++    I+ GY+ K+   +G  +M+SR +   V    L D    + +   + F I +L
Sbjct: 932  -DNIKEGEILTGYIIKSSEEEGVDVMVSRDVTIHVAPGELLDNTSYHGKDFSRIFCIQRL 990

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            V   ++  E L    E TLK S           ++    V   VI  I    S GLF+  
Sbjct: 991  VKVSIIDKEGL----EGTLKQSVIYPGIIKYFKDIKENIVTKCVIVNIT---SEGLFLRF 1043

Query: 1364 ENTNLVGLCHVSELSEDHV--DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
             N+N+ GLCH S++ +  +    +E  ++  + +  K++ +DK+K R++  +K      D
Sbjct: 1044 FNSNIRGLCHCSKIEDKKLTKKEMEKRFKIKDVIMAKVVHIDKKKHRVNFSIKPE----D 1099

Query: 1422 ADNLQMSSEEES 1433
               ++M  EEE+
Sbjct: 1100 VGEVEMKDEEET 1111


>gi|380494873|emb|CCF32825.1| rRNA biogenesis protein RRP5, partial [Colletotrichum higginsianum]
          Length = 565

 Score = 96.3 bits (238), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 179/407 (43%), Gaps = 38/407 (9%)

Query: 9   GMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL-------- 57
           G  + G +  ++   L I LP  L G   +A  +D  +  L+ ++ A ++          
Sbjct: 139 GSLVLGQITHIDTVQLTIALPNNLTGHVSIASISDTTNSKLEKDLNAADEESDDDEEEDD 198

Query: 58  ----LPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 112
               L ++F +GQ V   VL   D+      KR+I LSLR +    G++ + V     L 
Sbjct: 199 EGIDLKSMFKIGQYVRTHVLSTADESGPGKAKRRIELSLRPAEANAGITGDDVVAHTTLM 258

Query: 113 AYVKSIEDHGYILHFGLPS-FTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVY 170
           A + S++DHGY +  G+     GFLP+  +  +     ++PG +   VV+S+  T  VV 
Sbjct: 259 ASIASVQDHGYEMDLGIEGDLKGFLPKKEVGPDMDEASLRPGAVCLCVVKSV--TGIVVQ 316

Query: 171 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
           LS+DP  +           +I+  +PG +    +  +   G+    L +   T D+ H  
Sbjct: 317 LSTDPLKLGNTSLVASTAPTINSFLPGSLADVLLTEVTSRGIQGKLLGHLPVTADLIHSG 376

Query: 231 NTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL-----------HNRAPP 277
                 + +  Y    +V ARI+   P +R   +G++L P+++             +AP 
Sbjct: 377 VGPDNVDLEAKYTVGTRVKARIICNFPAAREPKLGISLLPHIVGLQPKSSGKGSRAKAPL 436

Query: 278 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKE 334
             + +    ++  V +V+  +GL +D     ++   +V IS V + +V  L      +K 
Sbjct: 437 DILPIASFVEKCTVRKVEPEIGLYVDTGVPGIA--GFVHISRVKDGKVDALYETSGPHKV 494

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 381
           GS  R R++G+  L+G+     + +  +       DV  G VV GK+
Sbjct: 495 GSTHRGRVVGYSSLDGMFLLSFEQNILDQPFIRLEDVPVGEVVSGKI 541


>gi|421733456|ref|ZP_16172561.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
 gi|407078595|gb|EKE51396.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
          Length = 490

 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 190/411 (46%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +              
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVR------------- 159

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
              LS Y  GQ +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 160  -DLSPYI-GQKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ ++ E+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKSSEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 153/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +        + V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKSSEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 152/376 (40%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-GSVIQAA------ 798
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+  +V++++      
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKSSEEVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|229817852|ref|ZP_04448134.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
            20098 = JCM 7096]
 gi|229784752|gb|EEP20866.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
            20098 = JCM 7096]
          Length = 490

 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  V    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTV--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                     Q ++ K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIEAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 147/373 (39%), Gaps = 42/373 (11%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 569
            V+  +++      R+ LS        +  D+ K+     GVV+     AV   +I    
Sbjct: 85  TVEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKE-ADGVVEGTVIEAVKGGLIVDIG 143

Query: 570 SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL-P 628
            +G +P   +   +     +   I    E  ++L LD   +N++LS +  L  +  ++  
Sbjct: 144 LRGFLPASLV--EMRRVRDLSPYIGQKIEA-KILELDKNRNNVVLSRRQYLEETQSEVRE 200

Query: 629 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 688
           +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG  V 
Sbjct: 201 TFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGDKVT 259

Query: 689 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 748
             +LDV+ +  RI+LSLK +        F + H                          +
Sbjct: 260 VEVLDVDLDRERISLSLK-ATQEDPWQRFARTH--------------------------V 292

Query: 749 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 801
            G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   ++D
Sbjct: 293 PGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVKVID 350

Query: 802 VAKAERLVDLSLK 814
           V    R + LSLK
Sbjct: 351 VDLDRRRISLSLK 363



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTVEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ ++ +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIEAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|449703272|gb|EMD43754.1| S1 RNA binding domain containing protein [Entamoeba histolytica
           KU27]
          Length = 1234

 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 196/439 (44%), Gaps = 28/439 (6%)

Query: 291 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 350
           + ++D  +G+   I  T      +++   + +E    + K++K GS  + R++ +   +G
Sbjct: 456 ISKIDENVGI---IGETEDKEEVFLSKKQIKDESCSDIPKEFKIGSTHKGRVMYYSAFDG 512

Query: 351 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
                 + S       +  D+K GM+++G +  V+  G IV+    +   C   +  +  
Sbjct: 513 YCGITTRESILSDKYQSIFDIKSGMIIEGTIKEVNEKGIIVKIGEKIYGFCDKINSGDIP 572

Query: 411 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
           I      FK   +  FRVL V ++   I +THK+TL+K+   I+++  E     IT G +
Sbjct: 573 IEDLQSVFKKEQKSKFRVLTVNNRNNSIYLTHKRTLMKATTPIITTIEETELNTITFGTV 632

Query: 469 TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 527
           T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 633 TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKVRIISFDKQLLLCSL 688

Query: 528 SFMMKPTRVSE--DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLA 580
           + +     V E  +D+ +   +G +  G+V V     +++  I  G  +    +P   + 
Sbjct: 689 N-LFPEENVPEKYEDVSRHFEVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVI 746

Query: 581 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 640
           D  E   + K +I+ G    + L+L N+   ++++ K SLI+  +++    S        
Sbjct: 747 DGDEGQDIPK-MIRNGTILKECLLLKNQMGQMVITTKKSLISLRKKIGKFNSKEEMTVGK 805

Query: 641 H-GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
           + GYV  I    CF+ F   +T    R    D     + +   VGQ+V   +        
Sbjct: 806 YIGYVSKIKGKYCFISFYNGVTILCYRMNVSD-TNLPIEEVLEVGQTVYGYL------NK 858

Query: 700 RITLSLKQSCCSSTDASFM 718
           +   SLK+S   S    FM
Sbjct: 859 KGIFSLKESSVGSIKEEFM 877


>gi|384915508|ref|ZP_10015724.1| 30S ribosomal protein S1 [Methylacidiphilum fumariolicum SolV]
 gi|384527058|emb|CCG91595.1| 30S ribosomal protein S1 [Methylacidiphilum fumariolicum SolV]
          Length = 558

 Score = 95.5 bits (236), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 194/415 (46%), Gaps = 64/415 (15%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAV 1091
            V +G  V G V  V +  A + +   +   + I D ++     PSE+        +G+ +
Sbjct: 179  VHVGDLVKGVVKNVTDFGAFIDLD-GIDGLIHITDMSWGRINHPSEI------LKVGQEI 231

Query: 1092 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1151
               V+ +++EK+ + L       G+  KT +   +N++     G  V G++  +     G
Sbjct: 232  EVVVIDVDREKERVSL-------GLKQKTPN-PWENIEEKYPVGTKVKGKVVNLAPY--G 281

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
              +++ P + G VH +E+           + +    P      GQ V+  VL+I++    
Sbjct: 282  AFIELEPGIEGLVHISEI----------SWTQKITKPSEVLSMGQEVEAMVLDINKA--- 328

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
                E  L  SL  +   N  D ++++  PG             IV+G VKN ++ G +I
Sbjct: 329  ----EQKLSLSLKALE-VNPWDKASELYPPG------------TIVKGKVKNFSAYGAYI 371

Query: 1272 MLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
             L   LD  + +++LS    +  P +    G+ +  +VL ++  ++++ + +K       
Sbjct: 372  ELENALDGFIHVNDLSWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKILLGIKQLTEDPW 431

Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1390
             + E        VG+IV G++ ++ S+G FI + +  + GL H+S++S D V  ++ + +
Sbjct: 432  KEIE----KKYKVGEIVSGKVSKIASFGAFIQLAD-EIDGLVHISQISADRVAKVKDVLK 486

Query: 1391 AGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE---AIEEVGS 1442
             G++V  +I+K+DKE+RRI L +K+ ++  +    Q+  E E  E     EE+GS
Sbjct: 487  VGQEVSARIIKIDKEERRIGLSIKALHYTPE----QLEKEREKMEFSRPAEELGS 537



 Score = 70.9 bits (172), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 122/573 (21%), Positives = 243/573 (42%), Gaps = 96/573 (16%)

Query: 444 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 503
           +V+  LA +  + E +   I  G +         V      +G  P SE       EP S
Sbjct: 1   MVEMTLASIPDFVEGS---IVKGKVVDKNSKEVVVDIGYKSEGIIPLSEF-----EEPES 52

Query: 504 MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAV 560
           +  VGQ ++  + S       + LS      + + D ++K    G  ++G V  V    +
Sbjct: 53  I-QVGQEIEVLLESLENEEGMVVLSRQKAAQKQNWDKILKTFEEGGTITGKVKQVVKGGL 111

Query: 561 VVYVIAKGYSKGT----IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 616
           ++ +  + +   +    +P ++L ++ E AT+   ++K          +  E  N++LS 
Sbjct: 112 MLNIGVEAFLPASQIDVVPPKNLKEY-EGATLTCKIVK----------ISEERKNVVLSR 160

Query: 617 KYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 675
           +  +     Q+       +H   +V G V N+ + G F+   G + G    +    G+  
Sbjct: 161 REIVEAERNQKRLQFLEKVHVGDLVKGVVKNVTDFGAFIDLDG-IDGLIHITDMSWGRIN 219

Query: 676 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 735
             S+   VGQ +   ++DV+ E  R++L LKQ   +  +         +EEK        
Sbjct: 220 HPSEILKVGQEIEVVVIDVDREKERVSLGLKQKTPNPWEN--------IEEK-------- 263

Query: 736 HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GA 787
                      + +G+ ++GKV     +G  +  E    + G +   +++          
Sbjct: 264 -----------YPVGTKVKGKVVNLAPYGAFIELE--PGIEGLVHISEISWTQKITKPSE 310

Query: 788 TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 847
            +  G  ++A +LD+ KAE+ + LSLK + ++ + +A+         + +   K+   + 
Sbjct: 311 VLSMGQEVEAMVLDINKAEQKLSLSLKALEVNPWDKASELYPPGTIVKGK--VKNFSAY- 367

Query: 848 TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKF--PQKQFLNGQSVIATVMALP 904
              A +E+  EN L           G+  V+D + T+K   P +    G+ + A V+ + 
Sbjct: 368 --GAYIEL--ENAL----------DGFIHVNDLSWTRKINHPSEVLKKGEEIEAKVLEI- 412

Query: 905 SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 964
              T  ++LL +K ++E      K  +KK  Y VG +V  ++++I      ++      G
Sbjct: 413 -DKTNQKILLGIKQLTE---DPWKEIEKK--YKVGEIVSGKVSKIASFGAFIQLADEIDG 466

Query: 965 RIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
            +HI++++ D+   V+++    K+GQ V+ARII
Sbjct: 467 LVHISQISADRVAKVKDV---LKVGQEVSARII 496



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 147/343 (42%), Gaps = 24/343 (6%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
           G +VKG V  V  FGA +    G+  L  +  MS   I  P +  KVG E+   V+ V  
Sbjct: 182 GDLVKGVVKNVTDFGAFIDL-DGIDGLIHITDMSWGRINHPSEILKVGQEIEVVVIDVDR 240

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           + +R+++  K+        I   Y   T      G +  +  +G F+    G++G    S
Sbjct: 241 EKERVSLGLKQKTPNPWENIEEKYPVGTK---VKGKVVNLAPYGAFIELEPGIEGLVHIS 297

Query: 492 ELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD----LVKLGS 546
           E+       +PS +  +GQ V+  ++    A ++++LS  +K   V+  D    L   G+
Sbjct: 298 EISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSLS--LKALEVNPWDKASELYPPGT 355

Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFD-QLL 603
           +V G V   +  A   Y+  +    G I    L+    + H +    V+K G E + ++L
Sbjct: 356 IVKGKVKNFS--AYGAYIELENALDGFIHVNDLSWTRKINHPS---EVLKKGEEIEAKVL 410

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D  +  +LL  K    +  +++           +V G V  I   G F++    + G 
Sbjct: 411 EIDKTNQKILLGIKQLTEDPWKEI---EKKYKVGEIVSGKVSKIASFGAFIQLADEIDGL 467

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
              S+    + A +     VGQ V + I+ ++ E  RI LS+K
Sbjct: 468 VHISQISADRVAKVKDVLKVGQEVSARIIKIDKEERRIGLSIK 510



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 139/289 (48%), Gaps = 41/289 (14%)

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
            ++TF  EG  + G++ +++ G  GL++ IG        F     I V  P +        
Sbjct: 90   LKTF-EEGGTITGKVKQVVKG--GLMLNIGVE-----AFLPASQIDVVPPKN-------- 133

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
             L  Y EG  + CK+++IS   +   +V LS R  ++   +              K L+ 
Sbjct: 134  -LKEY-EGATLTCKIVKISEERK---NVVLSRREIVEAERNQ-------------KRLQF 175

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +E +    +V+G VKNVT  G FI L   +D  + ++++S G +  P +   +G+ +   
Sbjct: 176  LEKVHVGDLVKGVVKNVTDFGAFIDLD-GIDGLIHITDMSWGRINHPSEILKVGQEIEVV 234

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            V+ V+   +RV + LK    +T +  E N      VG  V G++  +  YG FI +E   
Sbjct: 235  VIDVDREKERVSLGLK---QKTPNPWE-NIEEKYPVGTKVKGKVVNLAPYGAFIELE-PG 289

Query: 1368 LVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            + GL H+SE+S    +     +   G++V+  +L ++K ++++SL +K+
Sbjct: 290  IEGLVHISEISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSLSLKA 338



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 105/473 (22%), Positives = 198/473 (41%), Gaps = 69/473 (14%)

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           D   G +VKGKV+  +S   +V      + + PL    E E ++ G++     E++   L
Sbjct: 11  DFVEGSIVKGKVVDKNSKEVVVDIGYKSEGIIPLSEFEEPESIQVGQEI----EVLLESL 66

Query: 430 GVKSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
             +   + ++ +K   K     IL ++ E     IT G + ++ K G  +    GV+ F 
Sbjct: 67  ENEEGMVVLSRQKAAQKQNWDKILKTFEEGG--TIT-GKVKQVVKGGLMLNI--GVEAFL 121

Query: 489 PRSELGLDPGCEPSSMY-HVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 541
           P S++ + P   P ++  + G  + C+I+       ++  SRR  +       R+   + 
Sbjct: 122 PASQIDVVP---PKNLKEYEGATLTCKIVKISEERKNVVLSRREIVEAERNQKRLQFLEK 178

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
           V +G LV GVV  VT      ++   G       T+     + H +    ++K G E + 
Sbjct: 179 VHVGDLVKGVVKNVTDFG--AFIDLDGIDGLIHITDMSWGRINHPS---EILKVGQEIEV 233

Query: 602 LLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +++ +D E   + L  K    N  + +       +P  + V G V N+   G F+     
Sbjct: 234 VVIDVDREKERVSLGLKQKTPNPWENIEEK----YPVGTKVKGKVVNLAPYGAFIELEPG 289

Query: 660 LTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 718
           + G    S+    Q+    S+   +GQ V + +LD+N    +++LSLK    +  D +  
Sbjct: 290 IEGLVHISEISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSLSLKALEVNPWDKA-- 347

Query: 719 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 778
                               SEL     +  G++++GKV   + +G  +  E   D  GF
Sbjct: 348 --------------------SEL-----YPPGTIVKGKVKNFSAYGAYIELENALD--GF 380

Query: 779 ITHHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
           I  + L+           ++ G  I+A +L++ K  + + L +K +  D ++E
Sbjct: 381 IHVNDLSWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKILLGIKQLTEDPWKE 433



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 105/496 (21%), Positives = 193/496 (38%), Gaps = 61/496 (12%)

Query: 59  PTIFHVGQLVSCIVLQLDDD-------KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 111
           P    VGQ +  ++  L+++       +++  +++ W  +          L+T +EG  +
Sbjct: 50  PESIQVGQEIEVLLESLENEEGMVVLSRQKAAQKQNWDKI----------LKTFEEGGTI 99

Query: 112 TAYVKSIEDHGYILHFGLPSF-----TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR 166
           T  VK +   G +L+ G+ +F        +P  NL E  G        L   +  I   R
Sbjct: 100 TGKVKQVVKGGLMLNIGVEAFLPASQIDVVPPKNLKEYEG------ATLTCKIVKISEER 153

Query: 167 KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 226
           K V LS      ++   K L+       +  + V   V+ +++N           G   +
Sbjct: 154 KNVVLSRREIVEAERNQKRLQ------FLEKVHVGDLVKGVVKNVTDFGAFIDLDGIDGL 207

Query: 227 FHLQN-TFPTTNWKNDYNQ-HKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSH 279
            H+ + ++   N  ++  +  +++   ++ VD     V L L     NP+       P  
Sbjct: 208 IHITDMSWGRINHPSEILKVGQEIEVVVIDVDREKERVSLGLKQKTPNPWENIEEKYPVG 267

Query: 280 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCV 338
            KV     + KVV +    G  +++          V IS+++  +++ K  +    G  V
Sbjct: 268 TKV-----KGKVVNL-APYGAFIELEP---GIEGLVHISEISWTQKITKPSEVLSMGQEV 318

Query: 339 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 398
              +L     E   +  LKA              PG +VKGKV    ++GA ++    + 
Sbjct: 319 EAMVLDINKAEQKLSLSLKALEVNPWDKASELYPPGTIVKGKVKNFSAYGAYIELENALD 378

Query: 399 ALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE 457
               +  +S   +I  P +  K G E+  +VL      I  T++K L+  K      + E
Sbjct: 379 GFIHVNDLSWTRKINHPSEVLKKGEEIEAKVL-----EIDKTNQKILLGIKQLTEDPWKE 433

Query: 458 ATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 513
              +     I  G ++KI   G F++  + + G    S++  D   +   +  VGQ V  
Sbjct: 434 IEKKYKVGEIVSGKVSKIASFGAFIQLADEIDGLVHISQISADRVAKVKDVLKVGQEVSA 493

Query: 514 RIMSSIPASRRINLSF 529
           RI+      RRI LS 
Sbjct: 494 RIIKIDKEERRIGLSI 509



 Score = 48.1 bits (113), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 125/587 (21%), Positives = 232/587 (39%), Gaps = 96/587 (16%)

Query: 747  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA-TVESGSVIQAAILDVAKA 805
            F+ GS+++GKV + N   VVV     S+  G I   +     +++ G  I+  +  +   
Sbjct: 12   FVEGSIVKGKVVDKNSKEVVVDIGYKSE--GIIPLSEFEEPESIQVGQEIEVLLESLENE 69

Query: 806  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 865
            E +V L              S ++A +K+   +  K      T+   V+ V +  L+L  
Sbjct: 70   EGMVVL--------------SRQKAAQKQNWDKILKTFEEGGTITGKVKQVVKGGLML-- 113

Query: 866  PEYNHSIGY-ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 924
                 +IG  A +        P K     +    T   +  S     ++L  + I E E 
Sbjct: 114  -----NIGVEAFLPASQIDVVPPKNLKEYEGATLTCKIVKISEERKNVVLSRREIVEAE- 167

Query: 925  SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 984
             + KR +      VG LV+  +  +      +    G  G IHIT+++  + N    +  
Sbjct: 168  RNQKRLQFLEKVHVGDLVKGVVKNVTDFGAFIDLD-GIDGLIHITDMSWGRINHPSEI-- 224

Query: 985  NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFE--ECDVSIGQRV 1042
              K+GQ +   +I    + +     L + +  P             +E  E    +G +V
Sbjct: 225  -LKVGQEIEVVVIDVDREKERVSLGLKQKTPNP-------------WENIEEKYPVGTKV 270

Query: 1043 TGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHIGKAVTGHVLS 1097
             G V  +    A + +   ++  + I + ++     +PSE+        +G+ V   VL 
Sbjct: 271  KGKVVNLAPYGAFIELEPGIEGLVHISEISWTQKITKPSEV------LSMGQEVEAMVLD 324

Query: 1098 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1157
            INK ++ L L L+  +    DK  ++           G IV G++ K  S  G   +++ 
Sbjct: 325  INKAEQKLSLSLKALEVNPWDKASEL--------YPPGTIVKGKV-KNFSAYGAY-IELE 374

Query: 1158 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1217
              L G +H  +L           +      P     +G+ ++ KVLEI +T +      L
Sbjct: 375  NALDGFIHVNDL----------SWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKIL---L 421

Query: 1218 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
             ++             L+ D   P K +EK        IV G V  + S G FI L+ ++
Sbjct: 422  GIKQ------------LTED---PWKEIEK--KYKVGEIVSGKVSKIASFGAFIQLADEI 464

Query: 1278 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
            D  V +S +S   V   +    +G+ V+ R++ ++   +R+ +++K 
Sbjct: 465  DGLVHISQISADRVAKVKDVLKVGQEVSARIIKIDKEERRIGLSIKA 511


>gi|183601485|ref|ZP_02962855.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            HN019]
 gi|219683973|ref|YP_002470356.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            AD011]
 gi|241191015|ref|YP_002968409.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            Bl-04]
 gi|241196421|ref|YP_002969976.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis DSM
            10140]
 gi|384194007|ref|YP_005579753.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            BLC1]
 gi|384195573|ref|YP_005581318.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis V9]
 gi|387820881|ref|YP_006300924.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            B420]
 gi|387822557|ref|YP_006302506.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            Bi-07]
 gi|423679541|ref|ZP_17654417.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis BS
            01]
 gi|183219091|gb|EDT89732.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            HN019]
 gi|219621623|gb|ACL29780.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            AD011]
 gi|240249407|gb|ACS46347.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            Bl-04]
 gi|240250975|gb|ACS47914.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis DSM
            10140]
 gi|295794004|gb|ADG33539.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis V9]
 gi|345282866|gb|AEN76720.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            BLC1]
 gi|366041185|gb|EHN17689.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis BS
            01]
 gi|386653582|gb|AFJ16712.1| SSU ribosomal protein S1p [Bifidobacterium animalis subsp. lactis
            B420]
 gi|386655165|gb|AFJ18294.1| SSU ribosomal protein S1p [Bifidobacterium animalis subsp. lactis
            Bi-07]
          Length = 493

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 171/380 (45%), Gaps = 52/380 (13%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
            G  V G V KVD++  LL I    +  +     + E S  ++      +    T   L +
Sbjct: 36   GDLVEGTVVKVDHDEVLLDIGYKTEGVI----PSRELSIKKDVDPDDVVKVGDTIEALVV 91

Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIG 1157
             KE K  RL+L   +        DI        I E D +V G + + + G  GL+V IG
Sbjct: 92   TKEDKEGRLILSKKRAQYERAWGDIEK------IKENDGVVEGTVIEAVKG--GLIVDIG 143

Query: 1158 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1217
               +      E++ +    P  G               Q +K KVLE+ +      +V L
Sbjct: 144  LRGFLPASLVEMRRVRDLSPYIG---------------QKIKAKVLELDKNRN---NVVL 185

Query: 1218 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
            S R  L+   S                   +  L    I +G V ++ + G F+ L   +
Sbjct: 186  SRRQYLEETQSEVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GV 231

Query: 1278 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1337
            D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++LK +      +     
Sbjct: 232  DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQR 286

Query: 1338 LSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
             +  HV G IV G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ + GE+V 
Sbjct: 287  FARTHVPGQIVRGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKPGEEVF 345

Query: 1397 VKILKVDKEKRRISLGMKSS 1416
            VK++ VD ++RRISL +K +
Sbjct: 346  VKVIDVDLDRRRISLSLKQA 365



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 21/257 (8%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 516
           +  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +++      
Sbjct: 125 VVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKVLELDKNR 180

Query: 517 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 577 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 634
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            P  +V G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDV 351

Query: 695 NSETGRITLSLKQSCCS 711
           + +  RI+LSLKQ+  S
Sbjct: 352 DLDRRRISLSLKQANDS 368



 Score = 45.8 bits (107), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 147/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDDVVKVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKENDGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KVLELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G ++ GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVRGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 42.0 bits (97), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPNSE 374


>gi|182414675|ref|YP_001819741.1| 30S ribosomal protein S1 [Opitutus terrae PB90-1]
 gi|177841889|gb|ACB76141.1| ribosomal protein S1 [Opitutus terrae PB90-1]
          Length = 557

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 114/192 (59%), Gaps = 16/192 (8%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            V+G V+N+T+ G FI L   +D  V +S++S    V  P +    G  V   VL V+P  
Sbjct: 362  VRGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQ 421

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ + +K     T   S+I+  ++  +GD+V G + ++ S+G F+ +++  + GL H+S
Sbjct: 422  QRISLGMKQL--ATDPWSDID--AHFRIGDVVTGTVTKLTSFGAFVELKD-GIDGLVHIS 476

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
            ++SE+ +D ++ + + G++V  +++K+D+E+RR+ L +K++ +  +    Q+++E  + E
Sbjct: 477  QISEERIDKVKDVLKPGQQVTARVIKIDREERRLGLSIKAANYSAE----QLAAETNAFE 532

Query: 1436 AIEEVGSYNRSS 1447
            A+      NRSS
Sbjct: 533  AL------NRSS 538



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 40/290 (13%)

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
            DN+ T   EG +  GR+   + G  GL+V IG        F    +I V  P +      
Sbjct: 92   DNILTKFPEGSVATGRVKAKVKG--GLIVSIGVD-----AFMPASHIDVQPPKN------ 138

Query: 1186 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1245
               L  Y  GQ    KVL+I+   +   ++ LS R  ++   +     L           
Sbjct: 139  ---LDQY-VGQTYDFKVLKINLERK---NIVLSRRELIEEQRTNKRRAL----------- 180

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
              ++ + P  I +G VKN+T  G FI L   +D  + ++++S G +  P +    G+ V 
Sbjct: 181  --LDSIQPGQIRRGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRISHPSEMLKQGEEVQ 237

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
              ++ V    +RV + LK +        EI+      VG  V G++  +  YG F+ IE 
Sbjct: 238  VMIIEVNREKERVSLGLKQTTKN--PWDEIDR--KYPVGAKVHGKVVNLVPYGAFVEIE- 292

Query: 1366 TNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              + GL H++E+S    +     + + G+++   +L + KE+++ISLG++
Sbjct: 293  PGVEGLVHITEMSWTKRITKPSELLKVGQELDAVVLGIQKEEQKISLGLR 342



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 150/361 (41%), Gaps = 42/361 (11%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++PG + +G V  +  FGA +   G +  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 184 IQPGQIRRGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRISHPSEMLKQGEEVQVMIIE 242

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V  + +R+++  K+T       I   Y         HG +  +  +G FV    GV+G  
Sbjct: 243 VNREKERVSLGLKQTTKNPWDEIDRKYPVGAK---VHGKVVNLVPYGAFVEIEPGVEGLV 299

Query: 489 PRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK--- 543
             +E+       +PS +  VGQ +   ++      ++I+L    ++P      D+V+   
Sbjct: 300 HITEMSWTKRITKPSELLKVGQELDAVVLGIQKEEQKISLGLRQLEPNPW---DMVRHNY 356

Query: 544 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 597
            +G+ V G V  +T     + +      +G     H++D      + H +    ++K G 
Sbjct: 357 PIGARVRGKVRNMTTYGAFIEL-----EEGIDGMVHVSDMSWTRKVNHPS---EILKKGD 408

Query: 598 EFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETG 651
           E D +++ +D +   + L  K        QL +D      +H     VV G V  +   G
Sbjct: 409 EVDAIVLDVDPQQQRISLGMK--------QLATDPWSDIDAHFRIGDVVTGTVTKLTSFG 460

Query: 652 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
            FV     + G    S+  + +   +      GQ V + ++ ++ E  R+ LS+K +  S
Sbjct: 461 AFVELKDGIDGLVHISQISEERIDKVKDVLKPGQQVTARVIKIDREERRLGLSIKAANYS 520

Query: 712 S 712
           +
Sbjct: 521 A 521



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 116/568 (20%), Positives = 226/568 (39%), Gaps = 85/568 (14%)

Query: 445 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 504
           V   L   SS+ +  +  I  G IT+I ++   V      +G  P +E  +D G      
Sbjct: 4   VMQDLLAQSSFDKLKEGSIVPGVITEIRQNEVVVDIGGKSEGLVPANEF-IDIGE----- 57

Query: 505 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVV 561
             VG  ++  +           LSF +   + + D+++     GS+ +G V       ++
Sbjct: 58  LQVGSTIEVLVQKLEGKDGAPILSFDLAEQKKNWDNILTKFPEGSVATGRVKAKVKGGLI 117

Query: 562 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 621
           V +    +    +P  H+   ++    +   +   Y+F ++L ++ E  N++LS +  LI
Sbjct: 118 VSIGVDAF----MPASHI--DVQPPKNLDQYVGQTYDF-KVLKINLERKNIVLS-RRELI 169

Query: 622 NSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 679
              +     A    I P  +  G V NI + G F+   G + G    +    G+ +  S+
Sbjct: 170 EEQRTNKRRALLDSIQPGQIRRGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRISHPSE 228

Query: 680 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 739
               G+ V+  I++VN E  R++L LKQ+  +  D         ++ K            
Sbjct: 229 MLKQGEEVQVMIIEVNREKERVSLGLKQTTKNPWDE--------IDRK------------ 268

Query: 740 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA------GATVESGS 793
                  + +G+ + GKV     +G  V  E   +    IT              ++ G 
Sbjct: 269 -------YPVGAKVHGKVVNLVPYGAFVEIEPGVEGLVHITEMSWTKRITKPSELLKVGQ 321

Query: 794 VIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 853
            + A +L + K E+ + L L+ +  + +     N     + R +  +       T  A +
Sbjct: 322 ELDAVVLGIQKEEQKISLGLRQLEPNPWDMVRHNYPIGARVRGKVRN-----MTTYGAFI 376

Query: 854 EIVKENYLVLSLPEYNHSI-GYASVSDYN-TQKF--PQKQFLNGQSVIATVMALPSSSTA 909
           E+                I G   VSD + T+K   P +    G  V A V+ +      
Sbjct: 377 EL-------------EEGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQQ- 422

Query: 910 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
            R+ L +K ++    S        + + +G +V   +T++      ++   G  G +HI+
Sbjct: 423 -RISLGMKQLATDPWSDI-----DAHFRIGDVVTGTVTKLTSFGAFVELKDGIDGLVHIS 476

Query: 970 EVNDDKSNVVENLFSNFKIGQTVTARII 997
           ++++++ + V+++    K GQ VTAR+I
Sbjct: 477 QISEERIDKVKDV---LKPGQQVTARVI 501



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 111/483 (22%), Positives = 186/483 (38%), Gaps = 108/483 (22%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGV 431
           G V  G+V A    G IV    GV A  P  H+     V+P K     VG    F+VL +
Sbjct: 101 GSVATGRVKAKVKGGLIVSI--GVDAFMPASHID----VQPPKNLDQYVGQTYDFKVLKI 154

Query: 432 KSKRIT-VTHKKTLVKS-----KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
             +R   V  ++ L++      + A+L S        I  G +  I   G F+   +G+ 
Sbjct: 155 NLERKNIVLSRRELIEEQRTNKRRALLDSIQPGQ---IRRGVVKNITDFGAFIDL-DGMD 210

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK-- 543
           G    +++       PS M   G+ V+  I+       R++L  + + T+   D++ +  
Sbjct: 211 GLLHITDMSWGRISHPSEMLKQGEEVQVMIIEVNREKERVSLG-LKQTTKNPWDEIDRKY 269

Query: 544 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM---KSVIKP---- 595
            +G+ V G V  + P    V +            E   + L H T M   K + KP    
Sbjct: 270 PVGAKVHGKVVNLVPYGAFVEI------------EPGVEGLVHITEMSWTKRITKPSELL 317

Query: 596 --GYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSD-ASHIHP-NSVVHGYVCNIIET 650
             G E D +++ +  E   + L  +    N     P D   H +P  + V G V N+   
Sbjct: 318 KVGQELDAVVLGIQKEEQKISLGLRQLEPN-----PWDMVRHNYPIGARVRGKVRNMTTY 372

Query: 651 GCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYV---------GQSVRSNILDVNSETG 699
           G F+             + +DG    +D+S T  V         G  V + +LDV+ +  
Sbjct: 373 GAFIEL----------EEGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQQ 422

Query: 700 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 759
           RI+L +KQ   ++   S +  HF                          IG V+ G V +
Sbjct: 423 RISLGMKQ--LATDPWSDIDAHFR-------------------------IGDVVTGTVTK 455

Query: 760 SNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLS 812
              FG  V  ++  D  G +   Q++   ++        G  + A ++ + + ER + LS
Sbjct: 456 LTSFGAFVELKDGID--GLVHISQISEERIDKVKDVLKPGQQVTARVIKIDREERRLGLS 513

Query: 813 LKT 815
           +K 
Sbjct: 514 IKA 516



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            L ++  G I  G +K +  +G FI ++  +  GL H++++S   + +   + + GE+V+V
Sbjct: 181  LDSIQPGQIRRGVVKNITDFGAFIDLDGMD--GLLHITDMSWGRISHPSEMLKQGEEVQV 238

Query: 1398 KILKVDKEKRRISLGMKSSYFKNDADNL 1425
             I++V++EK R+SLG+K +  KN  D +
Sbjct: 239  MIIEVNREKERVSLGLKQTT-KNPWDEI 265



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 123/545 (22%), Positives = 216/545 (39%), Gaps = 84/545 (15%)

Query: 14  GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 73
           GV+ E+ + ++V+ + G   GL  A + +D          E         VG  +  +V 
Sbjct: 25  GVITEIRQNEVVVDIGGKSEGLVPANEFID--------IGE-------LQVGSTIEVLVQ 69

Query: 74  QLD-DDKKEIGKRKIWLSLRLSLLYKGLS--LETVQEGMVLTAYVKSIEDHGYILHFGLP 130
           +L+  D   I      LS  L+   K     L    EG V T  VK+    G I+  G+ 
Sbjct: 70  KLEGKDGAPI------LSFDLAEQKKNWDNILTKFPEGSVATGRVKAKVKGGLIVSIGVD 123

Query: 131 SFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 182
           +F   +P       S IDV+P        G      V  I+  RK + LS   + + +  
Sbjct: 124 AF---MP------ASHIDVQPPKNLDQYVGQTYDFKVLKINLERKNIVLSRR-ELIEEQR 173

Query: 183 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN------TFPTT 236
           T   + + +D + PG +    V++I + G  +       G   + H+ +      + P+ 
Sbjct: 174 TNKRRAL-LDSIQPGQIRRGVVKNITDFGAFIDL----DGMDGLLHITDMSWGRISHPSE 228

Query: 237 NWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPS----HVKVGDIYD 287
             K    Q ++V   I+ V+     V L L     NP+   +R  P     H KV ++  
Sbjct: 229 MLK----QGEEVQVMIIEVNREKERVSLGLKQTTKNPWDEIDRKYPVGAKVHGKVVNLVP 284

Query: 288 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 347
               V ++ G+  L+ I  T +S    +T          K  +  K G  +   +LG + 
Sbjct: 285 YGAFVEIEPGVEGLVHI--TEMSWTKRIT----------KPSELLKVGQELDAVVLGIQK 332

Query: 348 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 407
            E   +  L+            +   G  V+GKV  + ++GA ++   G+  +  +  MS
Sbjct: 333 EEQKISLGLRQLEPNPWDMVRHNYPIGARVRGKVRNMTTYGAFIELEEGIDGMVHVSDMS 392

Query: 408 EFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
               V  P +  K G E+   VL V  + +RI++  K+ L     + + ++    D  + 
Sbjct: 393 WTRKVNHPSEILKKGDEVDAIVLDVDPQQQRISLGMKQ-LATDPWSDIDAHFRIGD--VV 449

Query: 465 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            G +TK+   G FV   +G+ G    S++  +   +   +   GQ V  R++      RR
Sbjct: 450 TGTVTKLTSFGAFVELKDGIDGLVHISQISEERIDKVKDVLKPGQQVTARVIKIDREERR 509

Query: 525 INLSF 529
           + LS 
Sbjct: 510 LGLSI 514


>gi|402299919|ref|ZP_10819481.1| 30S ribosomal protein S1 [Bacillus alcalophilus ATCC 27647]
 gi|401724905|gb|EJS98228.1| 30S ribosomal protein S1 [Bacillus alcalophilus ATCC 27647]
          Length = 383

 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 186/382 (48%), Gaps = 54/382 (14%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            + +G  ++G + KV+++ A + +        + +D     SEL       H+ K     V
Sbjct: 15   IVVGDVISGKITKVEDKQAFVDVG-------YKVDGVIPISELS----SLHVEK--VSDV 61

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGLV 1153
            LS++ E +L  L L   +  +S + V       ++Q     G+++   I+ ++ G  GLV
Sbjct: 62   LSVDDEVELKVLKLEDDELVLSKRAVQAEKAWVSLQNSFETGEVIETIIADVVKG--GLV 119

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V +G  + G +            P S  +    +  S Y +G+ ++ KV+E+ +      
Sbjct: 120  VDLG--VRGFI------------PASLVERHYVEDFSDY-KGKTLRLKVVELDKDNNKLI 164

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
               LS R  LD            +V+   KHL  ++ + P M+++G V+ +T+ G F+ L
Sbjct: 165  ---LSQRVVLD-----------EEVEKQKKHL--LQGIEPGMVIEGTVQRLTNFGAFVDL 208

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  V +S L+   VESP      G  V  +VLSV+  S+RV +++K  D+      
Sbjct: 209  G-GVDGLVHISQLAHHRVESPSDVVSEGDKVKVKVLSVDTESERVSLSIK--DTLPGPWE 265

Query: 1334 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
            +I     +  GD+V G +KR+ S+G FI + +  + GL H+S+++  H+     +   GE
Sbjct: 266  KIEG--TISQGDVVSGTVKRLVSFGAFIEVAD-GVEGLVHISQIANRHIGTPSEVLTEGE 322

Query: 1394 KVKVKILKVDKEKRRISLGMKS 1415
            KV+ K+L V+ +++RISL +++
Sbjct: 323  KVQAKVLDVNLDEKRISLSIRA 344



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++PGMV++G V  + +FGA V   GGV  L  +  ++   +  P      G ++  +VL 
Sbjct: 186 IEPGMVIEGTVQRLTNFGAFVDL-GGVDGLVHISQLAHHRVESPSDVVSEGDKVKVKVLS 244

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V  +S+R++++ K TL      I  + ++     +  G + ++   G F+   +GV+G  
Sbjct: 245 VDTESERVSLSIKDTLPGPWEKIEGTISQGD---VVSGTVKRLVSFGAFIEVADGVEGLV 301

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             S++       PS +   G+ V+ +++      +RI+LS 
Sbjct: 302 HISQIANRHIGTPSEVLTEGEKVQAKVLDVNLDEKRISLSI 342



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            L  +  G ++ G ++R+ ++G F+ +   +  GL H+S+L+   V++   +   G+KVKV
Sbjct: 183  LQGIEPGMVIEGTVQRLTNFGAFVDLGGVD--GLVHISQLAHHRVESPSDVVSEGDKVKV 240

Query: 1398 KILKVDKEKRRISLGMKSS 1416
            K+L VD E  R+SL +K +
Sbjct: 241  KVLSVDTESERVSLSIKDT 259



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 158/395 (40%), Gaps = 72/395 (18%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 518
           +  G ITK+E    FV     V G  P SEL      + S +  V   V+ +++      
Sbjct: 20  VISGKITKVEDKQAFVDVGYKVDGVIPISELSSLHVEKVSDVLSVDDEVELKVLKLEDDE 79

Query: 519 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
           +  S+R   +   +   VS  +  + G ++  ++  V    +VV +  +G+   ++   H
Sbjct: 80  LVLSKR---AVQAEKAWVSLQNSFETGEVIETIIADVVKGGLVVDLGVRGFIPASLVERH 136

Query: 579 LADHL---EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-- 633
             +     +  T+   V++          LD +++ L+LS +  L    +++     H  
Sbjct: 137 YVEDFSDYKGKTLRLKVVE----------LDKDNNKLILSQRVVL---DEEVEKQKKHLL 183

Query: 634 --IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
             I P  V+ G V  +   G FV  LG + G    S+    +    S     G  V+  +
Sbjct: 184 QGIEPGMVIEGTVQRLTNFGAFVD-LGGVDGLVHISQLAHHRVESPSDVVSEGDKVKVKV 242

Query: 692 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW--VEGFII 749
           L V++E+ R++LS+K +                                  W  +EG I 
Sbjct: 243 LSVDTESERVSLSIKDTLPGP------------------------------WEKIEGTIS 272

Query: 750 -GSVIEGKVHESNDFGVVVSFEEHSD-VYGFITHHQLAGATVES-------GSVIQAAIL 800
            G V+ G V     FG   +F E +D V G +   Q+A   + +       G  +QA +L
Sbjct: 273 QGDVVSGTVKRLVSFG---AFIEVADGVEGLVHISQIANRHIGTPSEVLTEGEKVQAKVL 329

Query: 801 DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 835
           DV   E+ + LS++ +  +   +  ++ ++ K++ 
Sbjct: 330 DVNLDEKRISLSIRALIEEDVEDHYADYESHKEEE 364



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 1333 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
            SE+  + ++ VGD++ G+I +VE    F+ +    + G+  +SELS  HV+ +  +    
Sbjct: 7    SEVAGMKSIVVGDVISGKITKVEDKQAFVDV-GYKVDGVIPISELSSLHVEKVSDVLSVD 65

Query: 1393 EKVKVKILKVDKEKRRIS 1410
            ++V++K+LK++ ++  +S
Sbjct: 66   DEVELKVLKLEDDELVLS 83


>gi|188586255|ref|YP_001917800.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
            thermophilus JW/NM-WN-LF]
 gi|179350942|gb|ACB85212.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
            thermophilus JW/NM-WN-LF]
          Length = 705

 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 105/194 (54%), Gaps = 6/194 (3%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +E ++   IV G VK +T  G FI +   +D    +S +S   ++ PE E   G+ V  +
Sbjct: 494  METITEGDIVDGTVKRLTDFGAFIDIG-GIDGLCHISQISHSRIDHPESELETGENVKVK 552

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            VLS++P ++R+ +++K +            +     GDIV G++ R  ++G FI I    
Sbjct: 553  VLSLDPENERISLSIKEAQPDPFE----TFMKQYKSGDIVQGKVVRTVNFGAFIEI-TPG 607

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GLCH+S+LS+DHV   + +   G++V VKIL +D +++++SL +K +  K+  +  Q 
Sbjct: 608  VEGLCHISQLSDDHVAKTQDVVNEGDQVTVKILSIDDQQKKVSLSIKEAQGKSKKEQEQE 667

Query: 1428 SSEEESDEAIEEVG 1441
               +  D   EE G
Sbjct: 668  EFAKYQDSQEEEEG 681



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 44/249 (17%)

Query: 1306 GRVLSVEPLS---KRVEVTLKTSDSRTASQSEINN--LSNLHVGDIVIGQIKRVESYGLF 1360
            G  L ++P+     R ++ L   +     Q E  N  +  +  GDIV G +KR+  +G F
Sbjct: 457  GEELRLKPIELDRSRNKIVLSQKNILEQEQEEKKNKTMETITEGDIVDGTVKRLTDFGAF 516

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS---- 1416
            I I    + GLCH+S++S   +D+ E+    GE VKVK+L +D E  RISL +K +    
Sbjct: 517  IDI--GGIDGLCHISQISHSRIDHPESELETGENVKVKVLSLDPENERISLSIKEAQPDP 574

Query: 1417 -------YFKND------ADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES 1463
                   Y   D         +   +  E    +E  G  + S L ++     QD+  E 
Sbjct: 575  FETFMKQYKSGDIVQGKVVRTVNFGAFIEITPGVE--GLCHISQLSDDHVAKTQDVVNE- 631

Query: 1464 EDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE 1523
               G  V  +I          +++DD+Q  +   I + QG + + +  +E     AK ++
Sbjct: 632  ---GDQVTVKI----------LSIDDQQKKVSLSIKEAQGKSKKEQEQEE----FAKYQD 674

Query: 1524 KEEREQEIR 1532
             +E E+ ++
Sbjct: 675  SQEEEEGVK 683



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 6/177 (3%)

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
           IL+    E    T   +  G +V G V  +  FGA +   GG+  LC +  +S   I  P
Sbjct: 481 ILEQEQEEKKNKTMETITEGDIVDGTVKRLTDFGAFIDI-GGIDGLCHISQISHSRIDHP 539

Query: 415 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
             + + G  +  +VL +  +++RI+++ K+         +  Y       I  G + +  
Sbjct: 540 ESELETGENVKVKVLSLDPENERISLSIKEAQPDPFETFMKQYKSGD---IVQGKVVRTV 596

Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             G F+    GV+G    S+L  D   +   + + G  V  +I+S     ++++LS 
Sbjct: 597 NFGAFIEITPGVEGLCHISQLSDDHVAKTQDVVNEGDQVTVKILSIDDQQKKVSLSI 653



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 134/305 (43%), Gaps = 52/305 (17%)

Query: 530 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLADHLEHATV 588
           +MK T  S D L + G +V G V  VT +  ++ V   GY  +G++P   +   ++    
Sbjct: 312 LMKATEDSADKLDR-GQVVKGKVVKVTEDEAMIDV---GYKFEGSVPVNEMP--IKEGES 365

Query: 589 MKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 647
           ++ ++  G E D +++ +D+E   L+LS K++  +  +Q       +  +  +   V   
Sbjct: 366 LEDLLSEGDEIDVKVVKVDDEEGQLILSKKWA--DKDKQWEQLEQLMENDEEIKAQVTEE 423

Query: 648 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
           ++ G  V  LG+L GF P S        DLSK  YVG+ +R   ++++    +I LS K 
Sbjct: 424 VKGGLVVD-LGQLQGFIPASHVDIHYVPDLSK--YVGEELRLKPIELDRSRNKIVLSQKN 480

Query: 708 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 767
                          +LE++    Q  K N    K +E    G +++G V    DFG  +
Sbjct: 481 ---------------ILEQE----QEEKKN----KTMETITEGDIVDGTVKRLTDFGAFI 517

Query: 768 SFEEHSDVYGF--------ITHHQL--AGATVESGSVIQAAILDVAKAERLVDLSLKTVF 817
                 D+ G         I+H ++    + +E+G  ++  +L +      + LS+K   
Sbjct: 518 ------DIGGIDGLCHISQISHSRIDHPESELETGENVKVKVLSLDPENERISLSIKEAQ 571

Query: 818 IDRFR 822
            D F 
Sbjct: 572 PDPFE 576



 Score = 47.0 bits (110), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 14/171 (8%)

Query: 283 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 342
           GDI D +  V+     G  +DI            IS ++   +   E + + G  V+V++
Sbjct: 500 GDIVDGT--VKRLTDFGAFIDIGGID----GLCHISQISHSRIDHPESELETGENVKVKV 553

Query: 343 LGFR-HLEGLATGILKA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 399
           L      E ++  I +A    FE  +  +   K G +V+GKV+   +FGA ++   GV+ 
Sbjct: 554 LSLDPENERISLSIKEAQPDPFETFMKQY---KSGDIVQGKVVRTVNFGAFIEITPGVEG 610

Query: 400 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 448
           LC +  +S+  + K       G ++  ++L +  + K+++++ K+   KSK
Sbjct: 611 LCHISQLSDDHVAKTQDVVNEGDQVTVKILSIDDQQKKVSLSIKEAQGKSK 661


>gi|408501167|ref|YP_006865086.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
 gi|408465991|gb|AFU71520.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
          Length = 501

 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 186/406 (45%), Gaps = 58/406 (14%)

Query: 1019 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1072
             + V++IGS+  F +  D +I     G  V G V K+D++  LL I    +  +     +
Sbjct: 10   QVAVNDIGSEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----PS 65

Query: 1073 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1132
             E S  ++      +    T   L + KE K  RL+L   +        DI        I
Sbjct: 66   RELSIKKDVDPDDVVQVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------I 119

Query: 1133 HEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
             E D +V G + + + G  GL+V IG   +      E++ +                LS 
Sbjct: 120  KEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVR--------------DLSP 163

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            Y  GQ +K K+LE+ +      +V LS R  L+   S                   +  L
Sbjct: 164  YI-GQKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------MAQL 206

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
                I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V
Sbjct: 207  KKGQIREGTVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDV 265

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVG 1370
            +   +R+ ++LK +      +      +  HV G IV G++ ++  +G+F+++E+  + G
Sbjct: 266  DMDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFVSVED-GIEG 319

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            L H+SEL+  HV+N ET+ + GE++ VK++ VD ++RRISL +K +
Sbjct: 320  LVHISELANRHVENPETVVKQGEEIFVKVIDVDLDRRRISLSLKQA 365



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 124/288 (43%), Gaps = 23/288 (7%)

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFMAQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  G V  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGTVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G FV     + G 
Sbjct: 264 DVDMDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFVSVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
              S+  +    +       G+ +   ++DV+ +  RI+LSLKQ+  S
Sbjct: 321 VHISELANRHVENPETVVKQGEEIFVKVIDVDLDRRRISLSLKQADDS 368



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 38/222 (17%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           ++L LD   +N++LS +  L  +  ++     + +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQYLEETQSEVRETFMAQLKKGQIREGTVSSIVNFGAFVD-LGG 230

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDMDRERISLSLK-ATQEDPWQRFAR 289

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
            H                          + G +++GKV +   FGV VS E+   + G +
Sbjct: 290 TH--------------------------VPGQIVKGKVTKIVQFGVFVSVEDG--IEGLV 321

Query: 780 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 814
              +LA   VE+       G  I   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKQGEEIFVKVIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 19/208 (9%)

Query: 246 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 300
           +K+ A+IL +D     V L+   YL   ++       + +K G I + +    V+   G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFMAQLKKGQIREGTVSSIVN--FGA 224

Query: 301 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 357
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDMDRERISLSLKATQ 280

Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
              ++    TH    PG +VKGKV  +  FG  V    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFVSVEDGIEGLVHISELANRHVENPETV 337

Query: 418 FKVGAELVFRVLGV--KSKRITVTHKKT 443
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKQGEEIFVKVIDVDLDRRRISLSLKQA 365


>gi|386867152|ref|YP_006280146.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. animalis
            ATCC 25527]
 gi|385701235|gb|AFI63183.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. animalis
            ATCC 25527]
          Length = 493

 Score = 94.7 bits (234), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 171/380 (45%), Gaps = 52/380 (13%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
            G  V G V KVD++  LL I    +  +     + E S  ++      +    T   L +
Sbjct: 36   GDLVEGTVVKVDHDEVLLDIGYKTEGVI----PSRELSIKKDVDPDDVVKVGDTIEALVV 91

Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIG 1157
             KE K  RL+L   +        DI        I E D +V G + + + G  GL+V IG
Sbjct: 92   TKEDKEGRLILSKKRAQYERAWGDIEK------IKEDDGVVEGTVIEAVKG--GLIVDIG 143

Query: 1158 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1217
               +      E++ +    P  G               Q +K KVLE+ +      +V L
Sbjct: 144  LRGFLPASLVEMRRVRDLSPYIG---------------QKIKAKVLELDKNRN---NVVL 185

Query: 1218 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
            S R  L+   S                   +  L    I +G V ++ + G F+ L   +
Sbjct: 186  SRRQYLEETQSEVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GV 231

Query: 1278 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1337
            D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++LK +      +     
Sbjct: 232  DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQR 286

Query: 1338 LSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
             +  HV G IV G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ + GE+V 
Sbjct: 287  FARTHVPGQIVRGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKPGEEVF 345

Query: 1397 VKILKVDKEKRRISLGMKSS 1416
            VK++ VD ++RRISL +K +
Sbjct: 346  VKVIDVDLDRRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 125/288 (43%), Gaps = 23/288 (7%)

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKE--DDGVVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + +    + S   ++GQ +K +++      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKVLELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVRGKVTKIVQFGVFISVEDGIEGL 320

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDS 368



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 147/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDDVVKVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEDDGVVEGTVIEAVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KVLELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 798
             + G ++ GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVRGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPNSE 374


>gi|283458186|ref|YP_003362803.1| 30S ribosomal protein S1 [Rothia mucilaginosa DY-18]
 gi|283134218|dbj|BAI64983.1| ribosomal protein S1 [Rothia mucilaginosa DY-18]
          Length = 484

 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 191/416 (45%), Gaps = 66/416 (15%)

Query: 1013 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1062
            +S     + +++IG +  F E  + +I     G  V+G V K+D++  LL I       +
Sbjct: 1    MSTNIPQVAINDIGDEQAFLEAVEQTIKVFNDGDLVSGQVVKIDHDEVLLDIGYKTEGVI 60

Query: 1063 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1122
             ++   +    +PSE+ E      +G  V   VL+  KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDIDPSEVVE------LGSEVEALVLT--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1123 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            I        + E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------VKENDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
                          Q ++ K++E+ +      +V LS R+ L+   S   S         
Sbjct: 164  --------------QQIEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSSF------- 199

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
                  + +L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 200  ------LNELEKGQVREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLF 1360
            + V   VL V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F
Sbjct: 253  QPVTVEVLEVDLDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAF 307

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +E+  + GL H+SEL+  HVD  E +   GE+V VKI+ +D ++RRISL +K +
Sbjct: 308  VRVED-GIEGLVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           ++++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   V
Sbjct: 201 NELEKGQVREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEV 259

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G
Sbjct: 260 LEVDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEG 316

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL          +  VG+ V  +I+      RRI+LS 
Sbjct: 317 LVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSL 359



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 157/350 (44%), Gaps = 35/350 (10%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G+V+ +D    ++      + + P   +S    + P +  ++G+E+   VL  + 
Sbjct: 33  GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVELGSEVEALVLTKED 92

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKVKE-NDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R S  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELE 204

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P    + L
Sbjct: 205 KGQVREGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQP-VTVEVL 260

Query: 603 LV-LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
            V LD E  +L L A        Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 261 EVDLDRERVSLSLKA-------TQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 660 LTGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+ +  +  DL+ +   VG+ V   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISE-LATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362


>gi|288556073|ref|YP_003428008.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
 gi|288547233|gb|ADC51116.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
          Length = 385

 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 196/419 (46%), Gaps = 65/419 (15%)

Query: 1024 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1083
            E+ ++ L E   +++G  VTG V KV+++ AL+ +        F ++     SEL     
Sbjct: 4    EMNNEQLAEMKSLAVGDVVTGKVTKVEDKQALVDVG-------FKVEGIVPISELS---- 52

Query: 1084 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGR 1141
              H+ K     VLS++ E K+  L L   +  +S + V      D ++    +G+I+   
Sbjct: 53   SLHVEK--VSDVLSVDDELKMKILKLEDDELILSKRAVQAEKAWDQLRKQQEKGEIITAE 110

Query: 1142 ISKILSGVGGLVVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1196
            +++++ G  GLVV +G     P      HF E                     S Y +G+
Sbjct: 111  VAEVVKG--GLVVDVGVRGFIPASLVERHFVE-------------------DFSDY-KGR 148

Query: 1197 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1256
             ++ KV E+ +         LS R+ LD        ++             ++ L     
Sbjct: 149  ELRLKVEELDQENNKLI---LSQRAVLDAELEEKKKNV-------------LQSLKSGDT 192

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            V+G V+ +T+ G F+ +   +D  V +S L+   VE+P      G  V  +VLSV+P S+
Sbjct: 193  VEGTVQRLTNFGAFVDVG-GVDGLVHISQLAHHRVETPSDIVNEGDKVKVKVLSVDPDSE 251

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
            RV +++K  D++     E+     +  GD++ G ++R+ S+G F+ +    + GL H+S+
Sbjct: 252  RVSLSIK--DTQPGPWEEV--AGQISTGDVIEGTVRRLVSFGAFVEV-APGVEGLVHISQ 306

Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
            ++  H+     +   GEKV+VK+L V+ + +RISL ++    K+D ++   ++ E + E
Sbjct: 307  IANRHIGTPSEVLTEGEKVEVKVLDVNLDDKRISLSIR-ELLKDDTNDGDYAAYEANKE 364



 Score = 44.7 bits (104), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K G  V+G V  + +FGA V   GGV  L  +  ++   +  P      G ++  +VL 
Sbjct: 187 LKSGDTVEGTVQRLTNFGAFVDV-GGVDGLVHISQLAHHRVETPSDIVNEGDKVKVKVLS 245

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V   S+R++++ K T       +    +      +  G + ++   G FV    GV+G  
Sbjct: 246 VDPDSERVSLSIKDTQPGPWEEVAGQISTGD---VIEGTVRRLVSFGAFVEVAPGVEGLV 302

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             S++       PS +   G+ V+ +++      +RI+LS 
Sbjct: 303 HISQIANRHIGTPSEVLTEGEKVEVKVLDVNLDDKRISLSI 343


>gi|415720875|ref|ZP_11468119.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
 gi|415724199|ref|ZP_11469798.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
 gi|388061136|gb|EIK83793.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
 gi|388062890|gb|EIK85493.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
          Length = 501

 Score = 94.0 bits (232), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 58/407 (14%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1132 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1369
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +RI+++ K T          ++       +  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---VVKGKVTKIVQFGVFISVEDGIEG 319

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 21/254 (8%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 516
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 517 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 577 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 634
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            P  VV G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDV 351

Query: 695 NSETGRITLSLKQS 708
           + +  RI+LSLKQ+
Sbjct: 352 DLDRRRISLSLKQA 365



 Score = 45.1 bits (105), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 780 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 814
              +LA   VE+       G  +   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 246 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 300
           +K+ A+IL +D     V L+   +L   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 301 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 357
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
              ++    TH    PG VVKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 418 FKVGAELVFRVLGV--KSKRITVTHKKT 443
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 40.8 bits (94), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  +V+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANEAVDPNSE 374


>gi|308235374|ref|ZP_07666111.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14018 = JCM
            11026]
 gi|311114868|ref|YP_003986089.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
 gi|385801539|ref|YP_005837942.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
 gi|415703249|ref|ZP_11459127.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
 gi|415705124|ref|ZP_11460395.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
 gi|415707058|ref|ZP_11461905.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
 gi|417556555|ref|ZP_12207612.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
 gi|310946362|gb|ADP39066.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
 gi|333392955|gb|AEF30873.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
 gi|333602243|gb|EGL13673.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
 gi|388051846|gb|EIK74870.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
 gi|388052709|gb|EIK75724.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
 gi|388054058|gb|EIK77003.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
          Length = 500

 Score = 94.0 bits (232), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 58/407 (14%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1132 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1369
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +RI+++ K T          ++       +  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---VVKGKVTKIVQFGVFISVEDGIEG 319

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 21/254 (8%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 516
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 517 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 577 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 634
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            P  VV G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDV 351

Query: 695 NSETGRITLSLKQS 708
           + +  RI+LSLKQ+
Sbjct: 352 DLDRRRISLSLKQA 365



 Score = 45.1 bits (105), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 780 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 814
              +LA   VE+       G  +   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 246 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 300
           +K+ A+IL +D     V L+   +L   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 301 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 357
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
              ++    TH    PG VVKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 418 FKVGAELVFRVLGV--KSKRITVTHKKT 443
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 40.8 bits (94), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  +V+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANEAVDPNSE 374


>gi|415712938|ref|ZP_11465049.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
 gi|415713844|ref|ZP_11465297.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
 gi|388056538|gb|EIK79402.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
 gi|388059567|gb|EIK82298.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
          Length = 500

 Score = 94.0 bits (232), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 58/407 (14%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1132 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1369
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +RI+++ K T          ++       +  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---VVKGKVTKIVQFGVFISVEDGIEG 319

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSL 362



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 21/254 (8%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 516
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 517 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 577 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 634
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            P  VV G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDV 351

Query: 695 NSETGRITLSLKQS 708
           + +  RI+LSLKQ+
Sbjct: 352 DLDRRRISLSLKQA 365



 Score = 45.1 bits (105), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 780 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 814
              +LA   VE+       G  +   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 246 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 300
           +K+ A+IL +D     V L+   +L   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 301 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 357
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
              ++    TH    PG VVKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 418 FKVGAELVFRVLGV--KSKRITVTHKKT 443
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 40.8 bits (94), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  +V+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANEAVDPNSE 374


>gi|294790747|ref|ZP_06755905.1| ribosomal protein S1 [Scardovia inopinata F0304]
 gi|294458644|gb|EFG26997.1| ribosomal protein S1 [Scardovia inopinata F0304]
          Length = 494

 Score = 94.0 bits (232), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V K+D +  LL I       + ++   +    +P ++        +G  +   
Sbjct: 36   GDLVEGTVVKIDRDEVLLDIGYKTEGVIPSKELSIKKDVDPEDV------VQVGDTI--E 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1153
             L + KE K  RL+L   +        D+        I E D +V G + + + G  GL+
Sbjct: 88   ALVVTKEDKDGRLILSKKRAQYERAWGDVEK------IKEADGVVEGTVIETVKG--GLI 139

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V IG   +      E++ +    P  G               Q ++ K+LE+ +      
Sbjct: 140  VDIGLRGFLPASLVEMRRVRDLAPYIG---------------QRIQAKILELDKNRN--- 181

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
            +V LS R  L+   S                   +  L    I +G + ++ + G F+ L
Sbjct: 182  NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIREGTISSIVNFGAFVDL 228

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++LK++      + 
Sbjct: 229  G-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKST-----QED 282

Query: 1334 EINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
                 +  HV G IV G++ ++  +G+F+++++  + GL H+SEL+  HVDN ET+ + G
Sbjct: 283  PWQRFARTHVPGQIVKGKVTKIVQFGVFVSVDD-GIEGLIHISELANRHVDNPETVVKPG 341

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            E+V VK++ VD ++RRISL +K +
Sbjct: 342  EEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G + +G + ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGTISSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +RI+++ K T          ++       I  G +TKI + G FV   +G++G
Sbjct: 263 LDVDLDRERISLSLKSTQEDPWQRFARTHVPGQ---IVKGKVTKIVQFGVFVSVDDGIEG 319

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LIHISELANRHVDNPETVVKPGEEVFVKVIDVDLDRRRISLSL 362



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI++    +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDRDEVLLDIGYKTEGVIPSKELSIKKDVDPEDVVQVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKDGRLILSKKRAQYERAWGDVEKIKEADGVVEGTVIETVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 626
           +G+   ++        L  A  +   I+      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--APYIGQRIQA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 627 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +  +  S +    +  G + +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGTISSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +LDV+ +  RI+LSLK S        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-STQEDPWQRFARTH------------------------ 291

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG-------ATVESGSVIQAA 798
             + G +++GKV +   FGV VS ++   + G I   +LA          V+ G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFVSVDDG--IEGLIHISELANRHVDNPETVVKPGEEVFVK 347

Query: 799 ILDVAKAERLVDLSLK 814
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 149/350 (42%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P    +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDRDEVLLDIGYKTEGVIPSKELSIKKDVDPEDVVQVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGDVEKIKEADG--VVEGTVIETVKGGLIVDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    +K
Sbjct: 152 LVEMRRVRDLAP----YIGQRIQAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLK 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  G +  +      V +   G   G I    L+  H++H +    V+K G +   +
Sbjct: 208 KGQIREGTISSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G FV     + 
Sbjct: 262 VLDVDLDRERISLSLKSTQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFVSVDDGIE 318

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S
Sbjct: 319 GLIHISELANRHVDNPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDS 368


>gi|337747030|ref|YP_004641192.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            KNP414]
 gi|379720890|ref|YP_005313021.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            3016]
 gi|386723496|ref|YP_006189822.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            K02]
 gi|336298219|gb|AEI41322.1| RNA binding S1 domain protein [Paenibacillus mucilaginosus KNP414]
 gi|378569562|gb|AFC29872.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            3016]
 gi|384090621|gb|AFH62057.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            K02]
          Length = 414

 Score = 94.0 bits (232), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 178/383 (46%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ-----RRFHIGKAVTG 1093
            G  V G V KVD + A + +        +  D      EL   Q     +   IG+ +  
Sbjct: 33   GDIVKGKVIKVDADQAFVDVG-------YKYDGVVPVKELSSVQVDDASQNVEIGQEIEL 85

Query: 1094 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1153
             VL+I+  ++ L L  R   DG      + S D +   +    I+  ++++++ G  GLV
Sbjct: 86   KVLTIDDHREKLVLSKRAV-DG------EKSWDKLAADMENKTILEAKVAEVVKG--GLV 136

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V +G  L G V  + ++   V D             S Y +G+ ++ +V E+ R      
Sbjct: 137  VDVG--LRGFVPASMVERTFVED------------FSDY-KGRTLRLRVKEMDRE---KN 178

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
             V LS +  LD              +  GK  E +  LS   ++ G V+ +T  G F+ +
Sbjct: 179  KVILSQKDVLDE-------------EFEGKKKEVLAKLSVGQVLDGTVQRLTQFGAFVDI 225

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  V +S ++  +VE P +    G  V  +VL V+P ++R+ +++K +      Q 
Sbjct: 226  G-GVDGLVHISEMAWHHVEKPSEVVKEGDKVQVQVLKVDPENERISLSIKATQPGPWQQV 284

Query: 1334 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                   ++ GDIV G +KR+  +G FI +    + GL H+S+++  HV   + + + GE
Sbjct: 285  ----AGRINTGDIVTGTVKRLVQFGAFIEV-APGVEGLVHISQIAHRHVATPQEVLKEGE 339

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +VKVK+L ++ +++RISL +K +
Sbjct: 340  EVKVKVLDMNPDEKRISLSIKET 362



 Score = 76.3 bits (186), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 150/349 (42%), Gaps = 27/349 (7%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K G +VKGKVI VD+  A V        + P+  +S  ++    +  ++G E+  +VL 
Sbjct: 30  IKKGDIVKGKVIKVDADQAFVDVGYKYDGVVPVKELSSVQVDDASQNVEIGQEIELKVLT 89

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           +   R  +   K  V  + +     A+  ++ I    + ++ K G  V    G++GF P 
Sbjct: 90  IDDHREKLVLSKRAVDGEKSWDKLAADMENKTILEAKVAEVVKGGLVVDV--GLRGFVPA 147

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPTRVSEDDLV 542
           S +      E  S Y  G+ ++ R+        ++ LS        F  K   V    L 
Sbjct: 148 S-MVERTFVEDFSDYK-GRTLRLRVKEMDREKNKVILSQKDVLDEEFEGKKKEV----LA 201

Query: 543 KL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 600
           KL  G ++ G V  +T     V +   G   G +    +A H  H      V+K G +  
Sbjct: 202 KLSVGQVLDGTVQRLTQFGAFVDI---GGVDGLVHISEMAWH--HVEKPSEVVKEGDKVQ 256

Query: 601 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
            Q+L +D E+  + LS K +     QQ+   A  I+   +V G V  +++ G F+     
Sbjct: 257 VQVLKVDPENERISLSIKATQPGPWQQV---AGRINTGDIVTGTVKRLVQFGAFIEVAPG 313

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+      A   +    G+ V+  +LD+N +  RI+LS+K++
Sbjct: 314 VEGLVHISQIAHRHVATPQEVLKEGEEVKVKVLDMNPDEKRISLSIKET 362


>gi|422324913|ref|ZP_16405950.1| 30S ribosomal protein S1 [Rothia mucilaginosa M508]
 gi|353343622|gb|EHB87937.1| 30S ribosomal protein S1 [Rothia mucilaginosa M508]
          Length = 484

 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 191/416 (45%), Gaps = 66/416 (15%)

Query: 1013 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1062
            +S     + +++IG +  F E  + +I     G  V+G V K+D++  LL I       +
Sbjct: 1    MSTNIPQVAINDIGDEQAFLEAVEKTIKVFNDGDLVSGQVVKIDHDEVLLDIGYKTEGVI 60

Query: 1063 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1122
             ++   +    +PSE+ E      +G  V   VL+  KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDIDPSEVVE------LGSEVEALVLT--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1123 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            I        + E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------VKENDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
                          Q ++ K++E+ +      +V LS R+ L+   S   S         
Sbjct: 164  --------------QQIEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSSF------- 199

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
                  + +L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 200  ------LNELEKGQVREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLF 1360
            + V   VL V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F
Sbjct: 253  QPVTVEVLEVDLDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAF 307

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +E+  + GL H+SEL+  HVD  E +   GE+V VKI+ +D ++RRISL +K +
Sbjct: 308  VRVED-GIEGLVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           ++++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   V
Sbjct: 201 NELEKGQVREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEV 259

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G
Sbjct: 260 LEVDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEG 316

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL          +  VG+ V  +I+      RRI+LS 
Sbjct: 317 LVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSL 359



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 157/350 (44%), Gaps = 35/350 (10%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G+V+ +D    ++      + + P   +S    + P +  ++G+E+   VL  + 
Sbjct: 33  GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVELGSEVEALVLTKED 92

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKVKE-NDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R S  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELE 204

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P    + L
Sbjct: 205 KGQVREGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQP-VTVEVL 260

Query: 603 LV-LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
            V LD E  +L L A        Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 261 EVDLDRERVSLSLKA-------TQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 660 LTGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+ +  +  DL+ +   VG+ V   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISE-LATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362


>gi|283783083|ref|YP_003373837.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
 gi|283441435|gb|ADB13901.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
          Length = 500

 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 58/407 (14%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1132 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1369
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +RI+++ K T          ++       +  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---VVKGKVTKIVQFGVFISVEDGIEG 319

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 113/255 (44%), Gaps = 21/255 (8%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 516
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 517 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 577 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 634
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            P  VV G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDV 351

Query: 695 NSETGRITLSLKQSC 709
           + +  RI+LSLKQ+ 
Sbjct: 352 DLDRRRISLSLKQAT 366



 Score = 45.1 bits (105), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 780 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 814
              +LA   VE+       G  +   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 246 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 300
           +K+ A+IL +D     V L+   +L   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 301 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 357
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 358 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 417
              ++    TH    PG VVKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 418 FKVGAELVFRVLGV--KSKRITVTHKKT 443
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKGGEEVFVKVIDVDLDRRRISLSLKQA 365


>gi|159899614|ref|YP_001545861.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
            DSM 785]
 gi|159892653|gb|ABX05733.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
          Length = 501

 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 7/184 (3%)

Query: 1239 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1298
            D  G    ++ DL   M + G V +    G F+ +    D  V +S +SD  +ESP    
Sbjct: 90   DEDGTTPRRLADLHAGMELDGKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVV 149

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDS----RTASQSEINN--LSNLHVGDIVIGQIK 1352
             IG +V  RV SV+P ++R+ +T+++  S    R   + E+NN  L  L  GD+V G + 
Sbjct: 150  QIGDIVKVRVKSVDPDARRISLTMRSPRSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVN 209

Query: 1353 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1412
             +  +G+F+ I      GL H+SELSE+ V+  E     G+    ++L+VD   +RISL 
Sbjct: 210  GIAPFGVFVDI-GVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVLEVDTGAQRISLS 268

Query: 1413 MKSS 1416
            ++ +
Sbjct: 269  LRRA 272



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 125/269 (46%), Gaps = 27/269 (10%)

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
            G+ V IG    G VH +E+ +  +  P    D  Q         G  VK +V  +    R
Sbjct: 119  GVFVDIGVGRDGLVHISEMSDQRIESP---TDVVQI--------GDIVKVRVKSVDPDAR 167

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
                + L++RS         S         P  + +K+ +L P  +V G V  +   G F
Sbjct: 168  ---RISLTMRSP-------RSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVNGIAPFGVF 217

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS----- 1325
            + +    D  V +S LS+  VE  E    +G+    RVL V+  ++R+ ++L+ +     
Sbjct: 218  VDIGVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVLEVDTGAQRISLSLRRAKEDFQ 277

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
            +   A +    NL  +  G ++ G++  +  +G F+ +      GL H+SELSE  V  +
Sbjct: 278  ERPKAPRRREVNLDVIAPGTVLDGKVSGIAPFGAFVDL-GVGRDGLVHISELSEGRVGKV 336

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + + + G+ VKV++L+VD + +RISL M+
Sbjct: 337  DDVVKVGDPVKVRVLEVDPDSKRISLTMR 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 27/269 (10%)

Query: 466 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 525
           G +T    +G FV    G  G    SE+       P+ +  +G +VK R+ S  P +RRI
Sbjct: 110 GKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVVQIGDIVKVRVKSVDPDARRI 169

Query: 526 NLSF--------MMKPTR--VSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSK-G 572
           +L+            P R  V+ D L  +K G LV G V+ + P  V V +   G  K G
Sbjct: 170 SLTMRSPRSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVNGIAPFGVFVDI---GVGKDG 226

Query: 573 TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 632
            +    L+++          +   Y F ++L +D  +  + LS + +     Q+ P    
Sbjct: 227 LVHISELSENRVEKAEDAVTVGQSYTF-RVLEVDTGAQRISLSLRRAK-EDFQERPKAPR 284

Query: 633 H-------IHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVG 684
                   I P +V+ G V  I   G FV   +GR  G    S+  +G+   +     VG
Sbjct: 285 RREVNLDVIAPGTVLDGKVSGIAPFGAFVDLGVGR-DGLVHISELSEGRVGKVDDVVKVG 343

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSST 713
             V+  +L+V+ ++ RI+L+++     +T
Sbjct: 344 DPVKVRVLEVDPDSKRISLTMRVEEAPTT 372



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 28/247 (11%)

Query: 1086 HIGKAVTGHVLSINKEKKLLRLVLR-PFQDGI--SDKTVDISNDNMQTFIHEGDIVGGRI 1142
             IG  V   V S++ + + + L +R P  +G   + K  +++ND +   +  GD+V G +
Sbjct: 150  QIGDIVKVRVKSVDPDARRISLTMRSPRSEGRRRAPKRPEVNNDKLGE-LKPGDLVDGTV 208

Query: 1143 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
            + I     G+ V IG    G VH +EL    V        E   D ++    GQ    +V
Sbjct: 209  NGIAPF--GVFVDIGVGKDGLVHISELSENRV--------EKAEDAVT---VGQSYTFRV 255

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            LE+     G   + LSLR +          D       P +    ++ ++P  ++ G V 
Sbjct: 256  LEVDT---GAQRISLSLRRA--------KEDFQERPKAPRRREVNLDVIAPGTVLDGKVS 304

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             +   G F+ L    D  V +S LS+G V   +    +G  V  RVL V+P SKR+ +T+
Sbjct: 305  GIAPFGAFVDLGVGRDGLVHISELSEGRVGKVDDVVKVGDPVKVRVLEVDPDSKRISLTM 364

Query: 1323 KTSDSRT 1329
            +  ++ T
Sbjct: 365  RVEEAPT 371



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 16/178 (8%)

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           ++KPG +V G V  +  FG  V    G   L  +  +SE  + K      VG    FRVL
Sbjct: 197 ELKPGDLVDGTVNGIAPFGVFVDIGVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVL 256

Query: 430 GVKS--KRITVTHKKT---------LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 478
            V +  +RI+++ ++            + +   L   A  T   +  G ++ I   G FV
Sbjct: 257 EVDTGAQRISLSLRRAKEDFQERPKAPRRREVNLDVIAPGT---VLDGKVSGIAPFGAFV 313

Query: 479 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK--PT 534
               G  G    SEL      +   +  VG  VK R++   P S+RI+L+  ++  PT
Sbjct: 314 DLGVGRDGLVHISELSEGRVGKVDDVVKVGDPVKVRVLEVDPDSKRISLTMRVEEAPT 371



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 20/209 (9%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           +D+  GM + GKV +   +G  V    G   L  +  MS+  I  P    ++G  +  RV
Sbjct: 100 ADLHAGMELDGKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVVQIGDIVKVRV 159

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL-------ITHGWITKIEKHGCFVR 479
             V   ++RI++T +    + +           D+L       +  G +  I   G FV 
Sbjct: 160 KSVDPDARRISLTMRSPRSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVNGIAPFGVFVD 219

Query: 480 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS-------FMMK 532
              G  G    SEL  +   +      VGQ    R++     ++RI+LS       F  +
Sbjct: 220 IGVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVLEVDTGAQRISLSLRRAKEDFQER 279

Query: 533 PT----RVSEDDLVKLGSLVSGVVDVVTP 557
           P     R    D++  G+++ G V  + P
Sbjct: 280 PKAPRRREVNLDVIAPGTVLDGKVSGIAP 308


>gi|257068664|ref|YP_003154919.1| 30S ribosomal protein S1 [Brachybacterium faecium DSM 4810]
 gi|256559482|gb|ACU85329.1| SSU ribosomal protein S1P [Brachybacterium faecium DSM 4810]
          Length = 493

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 186/402 (46%), Gaps = 65/402 (16%)

Query: 1026 GSKLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPS 1076
            G+  L    D +I     G  V G V KVD++  LL I       + ++   +    +P 
Sbjct: 16   GADELMAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPG 75

Query: 1077 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1136
            E+ E      +G  +   VL   KE K  RL+L   +        + +   ++    +  
Sbjct: 76   EIVE------VGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIEQIKEDEG 122

Query: 1137 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1196
            +V GR+ +++ G  GL+V IG   +      E++ +    P  G               Q
Sbjct: 123  VVTGRVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG---------------Q 165

Query: 1197 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1256
             ++ K++E+ +      +V LS R+ L+   S   SD              ++ L    +
Sbjct: 166  EIEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSDF-------------LQTLQKGQV 209

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
             +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V+  VL V+   +
Sbjct: 210  REGAVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVSVEVLDVDMDRE 268

Query: 1317 RVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
            RV ++LK      A+Q +   L +  H +G++V G++ ++  +G F+ +E+  + GL H+
Sbjct: 269  RVSLSLK------ATQEDPWQLFARTHAIGEVVPGKVTKLVPFGAFVRVED-GIEGLVHI 321

Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            SEL++ HVD  E +    + V VK++ +D E+RRISL +K +
Sbjct: 322  SELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQA 363



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 163/392 (41%), Gaps = 44/392 (11%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEIVEVGDEIEALVLQKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEQIKE--DEGVVTGRVIEVVKGGLIVDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSDFLQTLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  G V  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 206 KGQVREGAVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVSVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 260 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHAIGEVVPGKVTKLVPFGAFVRVEDGI 315

Query: 661 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSC----CSSTDA 715
            G    S+    +  DL  +   V Q V   ++D++ E  RI+LSLKQ+         D 
Sbjct: 316 EGLVHISELAQ-RHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQANEGVDPEGDDT 374

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
           +F    +       M      NG E K+ EGF
Sbjct: 375 TFDPALY------GMAAEYDANG-EYKYPEGF 399



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 2/159 (1%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   VL 
Sbjct: 204 LQKGQVREGAVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVSVEVLD 262

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           V   R  V+      +     L +   A   ++  G +TK+   G FVR  +G++G    
Sbjct: 263 VDMDRERVSLSLKATQEDPWQLFARTHAIGEVVP-GKVTKLVPFGAFVRVEDGIEGLVHI 321

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           SEL       P  +  V Q V  +++      RRI+LS 
Sbjct: 322 SELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSL 360



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 119/294 (40%), Gaps = 60/294 (20%)

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
           G +V G V  V  + V++ +   GY ++G IP+  L+  ++H      +++ G E + L+
Sbjct: 34  GDIVEGTVVKVDHDEVLLDI---GYKTEGVIPSRELS--IKHDVDPGEIVEVGDEIEALV 88

Query: 604 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
           +  +++   L+LS K +    A    +Q+  D        VV G V  +++ G  V    
Sbjct: 89  LQKEDKEGRLILSKKRAQYERAWGTIEQIKED------EGVVTGRVIEVVKGGLIVDI-- 140

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDA 715
            L GF P S     +  DL    YVGQ + + I++++     + LS +   +   S+  +
Sbjct: 141 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRS 198

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
            F+Q           LQ                 G V EG V    +FG  V       V
Sbjct: 199 DFLQ----------TLQK----------------GQVREGAVSSIVNFGAFVDL---GGV 229

Query: 776 YGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
            G +   +L+          VE G  +   +LDV      V LSLK    D ++
Sbjct: 230 DGLVHVSELSWKHIDHPSEVVEVGQKVSVEVLDVDMDRERVSLSLKATQEDPWQ 283


>gi|379058793|ref|ZP_09849319.1| 30S ribosomal protein S1 [Serinicoccus profundi MCCC 1A05965]
          Length = 486

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 190/416 (45%), Gaps = 66/416 (15%)

Query: 1018 SMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            S + V++IGS+  L    D +I     G  V G + KVD +  LL I       + ++  
Sbjct: 11   SQIAVNDIGSEEELLAAIDATIKNFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVIPSREL 70

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +PSE+        +G  V   VL   KE K  RL+L   +        + +  +
Sbjct: 71   AIKHDVDPSEV------VTVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGS 117

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
            ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +     
Sbjct: 118  IEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----- 170

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
                      ++ K++E+ +      +V LS R+ L+   S   +               
Sbjct: 171  ----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF------------- 204

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +++L+   +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   
Sbjct: 205  LKELAKGQVRSGVVSSIVNFGAFVDLGGGVDGLVHVSELSWKHIDHPGEVVEVGDEVTVE 264

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1366
            VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+ 
Sbjct: 265  VLDVDMDRERVSLSLKAT-----LEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVED- 318

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
             + GL H+SEL+E HV+  E I   G +V VK++ +D E+RRISL +K +   NDA
Sbjct: 319  GIEGLVHISELAERHVELPEQIVTVGAEVFVKVIDIDLERRRISLSLKQA---NDA 371



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
           G V  G V ++ +FGA V   GGV  L  +  +S   I  PG+  +VG E+   VL V  
Sbjct: 211 GQVRSGVVSSIVNFGAFVDLGGGVDGLVHVSELSWKHIDHPGEVVEVGDEVTVEVLDVDM 270

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +R++++ K TL         ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATLEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           EL       P  +  VG  V  +++      RRI+LS 
Sbjct: 328 ELAERHVELPEQIVTVGAEVFVKVIDIDLERRRISLSL 365



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 30/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   ++    V P +   VG E+   VL  + 
Sbjct: 38  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELAIKHDVDPSEVVTVGDEVEALVLQKED 97

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGSIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    + 
Sbjct: 154 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELA 209

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +       +V   G   G +    L+  H++H      V++ G E   +
Sbjct: 210 KGQVRSGVVSSIVNFGA--FVDLGGGVDGLVHVSELSWKHIDHPG---EVVEVGDEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +L +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLDVDMDRERVSLSLKATLEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAERHVELPEQIVTVGAEVFVKVIDIDLERRRISLSLKQA 368



 Score = 43.9 bits (102), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 124/284 (43%), Gaps = 39/284 (13%)

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
           G +V GV+  V  + V++ +   GY ++G IP+  LA  ++H      V+  G E + L+
Sbjct: 38  GDIVEGVIVKVDRDEVLLDI---GYKTEGVIPSRELA--IKHDVDPSEVVTVGDEVEALV 92

Query: 604 VL-DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
           +  +++   L+LS K +    A    S       + VV G V  +++ G  +     L G
Sbjct: 93  LQKEDKEGRLILSKKRAQYERA--WGSIEKIKEEDGVVTGTVIEVVKGGLILDI--GLRG 148

Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDASFMQ 719
           F P S     +  DL    YVG+ + + I++++     + LS +   +   S    +F++
Sbjct: 149 FLPASLVEMRRVRDLQP--YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLK 206

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFI-IGSVIEGKVHESNDFGVVVSFEEHSDVYGF 778
           E    + +  ++ S  + G+       F+ +G  ++G VH S      +S++        
Sbjct: 207 ELAKGQVRSGVVSSIVNFGA-------FVDLGGGVDGLVHVSE-----LSWK-------- 246

Query: 779 ITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
             H    G  VE G  +   +LDV      V LSLK    D ++
Sbjct: 247 --HIDHPGEVVEVGDEVTVEVLDVDMDRERVSLSLKATLEDPWQ 288



 Score = 43.9 bits (102), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 133/305 (43%), Gaps = 53/305 (17%)

Query: 1040 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1090
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 112  ERAWGSIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 170

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1147
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G +S I++
Sbjct: 171  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLKELAKGQVRSGVVSSIVN 223

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
               G  V +G  + G VH +EL    +  P      G+       + G  V  +VL++  
Sbjct: 224  F--GAFVDLGGGVDGLVHVSELSWKHIDHP------GEV-----VEVGDEVTVEVLDVDM 270

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LSL+++L+    T +   +     PGK                 V  +   
Sbjct: 271  DRE---RVSLSLKATLEDPWQTFARTHAIGQVVPGK-----------------VTKLVPF 310

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   ++  V +S L++ +VE PE+   +G  V  +V+ ++   +R+ ++LK ++ 
Sbjct: 311  GAFVRVEDGIEGLVHISELAERHVELPEQIVTVGAEVFVKVIDIDLERRRISLSLKQAND 370

Query: 1328 RTASQ 1332
              A++
Sbjct: 371  AVANE 375


>gi|415726676|ref|ZP_11470947.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
 gi|388062902|gb|EIK85501.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
          Length = 499

 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 58/407 (14%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1132 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1369
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            GL H+SEL+  HV+N ET+ +A E+V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 48.1 bits (113), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 21/262 (8%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 516
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 517 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 577 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 634
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            P  VV G V  I++ G F+     + G    S+  +    +        + V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFVKVIDV 351

Query: 695 NSETGRITLSLKQSCCSSTDAS 716
           + +  RI+LSLKQ+  +   AS
Sbjct: 352 DLDRRRISLSLKQANEAVDPAS 373



 Score = 44.7 bits (104), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 780 THHQLAGATVESGSVIQAA-------ILDVAKAERLVDLSLK 814
              +LA   VE+   +  A       ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLK 363


>gi|374314868|ref|YP_005061296.1| 30S ribosomal protein S1 [Sphaerochaeta pleomorpha str. Grapes]
 gi|359350512|gb|AEV28286.1| ribosomal protein S1 [Sphaerochaeta pleomorpha str. Grapes]
          Length = 573

 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 172/377 (45%), Gaps = 54/377 (14%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
            GQ V G V +V+NE+  + +    + ++             EF     +G+ V   V+ I
Sbjct: 32   GQLVAGTVVQVNNEYVFVDVGYKSEGRI----------SRDEFTTIPEVGEQV--KVVII 79

Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
            NKE K  ++V+   +    ++T     D ++T       V G+  K++ G  G  V +G 
Sbjct: 80   NKEGKGGQIVVSKKRADFKERT-----DELKTAAEGRTPVMGKFEKVIKG--GFEVDLGG 132

Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
               G    ++   I V DP +      +  +  +  G  +K  V               +
Sbjct: 133  EYKGFCPLSKADVIRVEDPETLIGISDYFIIDKFHGGTKLKSVV---------------N 177

Query: 1219 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
             R  LD     N     + V        +I D     +V+G VK+ TS G FI L    D
Sbjct: 178  RREYLDQKIKENKEKFFSTV--------QIGD-----VVEGVVKSFTSFGAFIDLG-GFD 223

Query: 1279 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1338
              + ++++S G+V  P+     G++V  R+++++P ++++ ++LK       +  E    
Sbjct: 224  GLLHINDMSWGHVTRPKDFVKKGQVVQLRLINIDPETQKINLSLKHMQEDPWTTFE---- 279

Query: 1339 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKV 1397
             N HVGD+V   + ++ ++G FI IE   + GL H+SELS    V+N + +   G+ V+ 
Sbjct: 280  HNFHVGDVVKAPVTKITTFGAFIEIE-PGIEGLAHISELSWTKRVNNPKEVLDVGDVVEA 338

Query: 1398 KILKVDKEKRRISLGMK 1414
            KIL  D +K+R+SLG+K
Sbjct: 339  KILGYDLDKKRVSLGLK 355



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 148/352 (42%), Gaps = 27/352 (7%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S V+ G VV+G V +  SFGA +   GG   L  +  MS   + +P    K G  +  R+
Sbjct: 195 STVQIGDVVEGVVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQVVQLRL 253

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           + +  ++++I ++ K  + +             D  +    +TKI   G F+    G++G
Sbjct: 254 INIDPETQKINLSLKH-MQEDPWTTFEHNFHVGD--VVKAPVTKITTFGAFIEIEPGIEG 310

Query: 487 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 542
            A  SEL        P  +  VG VV+ +I+      +R++L        P     +   
Sbjct: 311 LAHISELSWTKRVNNPKEVLDVGDVVEAKILGYDLDKKRVSLGLKQLESNPWDTIAERYP 370

Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFD 600
              +L   VV +    A V         +G     H+ D    +    M S    G   D
Sbjct: 371 TGMTLSKPVVKITNSGAFV------NLEEGIDGFLHIDDISWTKKVKNMSSFCAEGDVID 424

Query: 601 QLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLG 658
            ++  ++ E+  + L  K    N  Q L     H +P  S + G + N+ + G FV+ LG
Sbjct: 425 VVVTRVEPENRRIRLGVKQLEGNPWQTL----RHDYPKFSTISGVITNVTDFGVFVKVLG 480

Query: 659 RLTGFAPRSKAV--DGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            + G   +   V  D + +D + K Y VG  + + +++ N  T +++LS+K+
Sbjct: 481 DIEGLISKFNLVGPDEEFSDEVLKKYNVGDPITAMVVECNPTTQKLSLSIKE 532



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 119/299 (39%), Gaps = 23/299 (7%)

Query: 278 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 337
           S V++GD+ +   VV+     G  +D+          + I+D++   V + +   K+G  
Sbjct: 195 STVQIGDVVE--GVVKSFTSFGAFIDLGGFD----GLLHINDMSWGHVTRPKDFVKKGQV 248

Query: 338 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 397
           V++R++            LK    +       +   G VVK  V  + +FGA ++   G+
Sbjct: 249 VQLRLINIDPETQKINLSLKHMQEDPWTTFEHNFHVGDVVKAPVTKITTFGAFIEIEPGI 308

Query: 398 KALCPLPHMSEFEIVK----PGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAI 451
           + L    H+SE    K    P +   VG  +  ++LG  +  KR+++  K+        I
Sbjct: 309 EGLA---HISELSWTKRVNNPKEVLDVGDVVEAKILGYDLDKKRVSLGLKQLESNPWDTI 365

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQV 510
              Y      +     + KI   G FV    G+ GF    ++      +  SS    G V
Sbjct: 366 AERYPTG---MTLSKPVVKITNSGAFVNLEEGIDGFLHIDDISWTKKVKNMSSFCAEGDV 422

Query: 511 VKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
           +   +    P +RRI L        P +    D  K  S +SGV+  VT   V V V+ 
Sbjct: 423 IDVVVTRVEPENRRIRLGVKQLEGNPWQTLRHDYPKF-STISGVITNVTDFGVFVKVLG 480



 Score = 48.1 bits (113), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 7/161 (4%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1314
            +V+  V  +T+ G FI +   ++    +S LS    V +P++   +G +V  ++L  +  
Sbjct: 287  VVKAPVTKITTFGAFIEIEPGIEGLAHISELSWTKRVNNPKEVLDVGDVVEAKILGYDLD 346

Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
             KRV + LK  +S           + + +   V+    ++ + G F+ +E   + G  H+
Sbjct: 347  KKRVSLGLKQLESNPWDTIAERYPTGMTLSKPVV----KITNSGAFVNLEE-GIDGFLHI 401

Query: 1375 SELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             ++S    V N+ +    G+ + V + +V+ E RRI LG+K
Sbjct: 402  DDISWTKKVKNMSSFCAEGDVIDVVVTRVEPENRRIRLGVK 442


>gi|415728146|ref|ZP_11471719.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
 gi|388065284|gb|EIK87775.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
          Length = 500

 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 58/407 (14%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1132 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1369
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            GL H+SEL+  HV+N ET+ +A E+V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 47.8 bits (112), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 21/255 (8%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 516
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 517 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 577 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 634
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            P  VV G V  I++ G F+     + G    S+  +    +        + V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFVKVIDV 351

Query: 695 NSETGRITLSLKQSC 709
           + +  RI+LSLKQ+ 
Sbjct: 352 DLDRRRISLSLKQAT 366



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 780 THHQLAGATVESGSVIQAA-------ILDVAKAERLVDLSLK 814
              +LA   VE+   +  A       ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLK 363


>gi|415718164|ref|ZP_11467146.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
 gi|388059993|gb|EIK82694.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
          Length = 500

 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 58/407 (14%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1132 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1369
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            GL H+SEL+  HV+N ET+ +A E+V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 47.8 bits (112), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 21/255 (8%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 516
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 517 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 577 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 634
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            P  VV G V  I++ G F+     + G    S+  +    +        + V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFVKVIDV 351

Query: 695 NSETGRITLSLKQSC 709
           + +  RI+LSLKQ+ 
Sbjct: 352 DLDRRRISLSLKQAT 366



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 780 THHQLAGATVESGSVIQAA-------ILDVAKAERLVDLSLK 814
              +LA   VE+   +  A       ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLK 363


>gi|410459394|ref|ZP_11313145.1| 30S ribosomal protein S1 [Bacillus azotoformans LMG 9581]
 gi|409930370|gb|EKN67371.1| 30S ribosomal protein S1 [Bacillus azotoformans LMG 9581]
          Length = 377

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 174/385 (45%), Gaps = 66/385 (17%)

Query: 1037 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1096
            +IG  V G V KV+++  L+ I        F ++     SEL       HI KA  G V+
Sbjct: 15   AIGDTVGGKVTKVEDKHVLVDIG-------FKVEGIVPISELS----SLHIEKA--GDVV 61

Query: 1097 SINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
             +N +  L  + +   +  +S K VD  N  D +      G++    +  ++ G  GLVV
Sbjct: 62   KVNDDLTLKVIKVEEEEIILSKKAVDAENAWDELVNKFETGEVFEAEVKDVVKG--GLVV 119

Query: 1155 QIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
             IG     P      HF E                     S Y +G+ +  KV+EI R  
Sbjct: 120  DIGVRGFIPASLVERHFVE-------------------DFSEY-KGRNISLKVVEIDRE- 158

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
                 V LS R+ LD   ++                + I+ L    +++G V+ +   G 
Sbjct: 159  --KNRVILSHRAVLDDEIASQKQ-------------QTIDALKVGQVLEGTVQRLADFGV 203

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ +   +D  V +S L+  +V+ P      G+ V  +VLS++  ++R+ +++K +    
Sbjct: 204  FVDIG-GIDGLVHISQLAHQHVDKPADVVAEGQKVKVKVLSIDKDNERISLSIKETLPGP 262

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
                   +L     GD V G +KR+ ++G F+ +   N+ GL H+S++S  H+     + 
Sbjct: 263  W------DLIEYKRGDEVSGTVKRLVNFGAFVEV-APNVEGLVHISQISNRHIATPHEVL 315

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMK 1414
            + GEKVKVKIL ++KE +RISL +K
Sbjct: 316  KEGEKVKVKILDINKENQRISLSIK 340



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 69/117 (58%), Gaps = 4/117 (3%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            G+ ++ +V+ ++    RV ++ +   D   ASQ +   +  L VG ++ G ++R+  +G+
Sbjct: 145  GRNISLKVVEIDREKNRVILSHRAVLDDEIASQKQ-QTIDALKVGQVLEGTVQRLADFGV 203

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            F+ I   +  GL H+S+L+  HVD    +   G+KVKVK+L +DK+  RISL +K +
Sbjct: 204  FVDIGGID--GLVHISQLAHQHVDKPADVVAEGQKVKVKVLSIDKDNERISLSIKET 258



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 141/341 (41%), Gaps = 23/341 (6%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G  V GKV  V+    +V     V+ + P+  +S   I K G   KV  +L  +V+ V+ 
Sbjct: 17  GDTVGGKVTKVEDKHVLVDIGFKVEGIVPISELSSLHIEKAGDVVKVNDDLTLKVIKVEE 76

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
           + I ++ K    ++    L +  E  +  +    +  + K G  V    GV+GF P S L
Sbjct: 77  EEIILSKKAVDAENAWDELVNKFETGE--VFEAEVKDVVKGGLVVDI--GVRGFIPAS-L 131

Query: 494 GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSL 547
                 E  S Y  G+ +  +++      + +  S R  L   +   +    D +K+G +
Sbjct: 132 VERHFVEDFSEYK-GRNISLKVVEIDREKNRVILSHRAVLDDEIASQKQQTIDALKVGQV 190

Query: 548 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 606
           + G V  +    V V +   G   G +    LA   +H      V+  G +   ++L +D
Sbjct: 191 LEGTVQRLADFGVFVDI---GGIDGLVHISQLAH--QHVDKPADVVAEGQKVKVKVLSID 245

Query: 607 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
            ++  + LS K +L       P D         V G V  ++  G FV     + G    
Sbjct: 246 KDNERISLSIKETLPG-----PWDLIEYKRGDEVSGTVKRLVNFGAFVEVAPNVEGLVHI 300

Query: 667 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
           S+  +   A   +    G+ V+  ILD+N E  RI+LS+K+
Sbjct: 301 SQISNRHIATPHEVLKEGEKVKVKILDINKENQRISLSIKE 341



 Score = 41.2 bits (95), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 105/261 (40%), Gaps = 30/261 (11%)

Query: 466 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY--HVGQVVKCRIMSSIPASR 523
           G +TK+E     V     V+G  P SEL        SS++    G VVK     ++   +
Sbjct: 22  GKVTKVEDKHVLVDIGFKVEGIVPISEL--------SSLHIEKAGDVVKVNDDLTLKVIK 73

Query: 524 ----RINLSFMMKPTRVSEDDLV---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
                I LS        + D+LV   + G +    V  V    +VV +  +G+   ++  
Sbjct: 74  VEEEEIILSKKAVDAENAWDELVNKFETGEVFEAEVKDVVKGGLVVDIGVRGFIPASLVE 133

Query: 577 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL---INSAQQLPSDASH 633
            H  +           +K       ++ +D E + ++LS +  L   I S +Q   DA  
Sbjct: 134 RHFVEDFSEYKGRNISLK-------VVEIDREKNRVILSHRAVLDDEIASQKQQTIDALK 186

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +    V+ G V  + + G FV  +G + G    S+         +     GQ V+  +L 
Sbjct: 187 V--GQVLEGTVQRLADFGVFVD-IGGIDGLVHISQLAHQHVDKPADVVAEGQKVKVKVLS 243

Query: 694 VNSETGRITLSLKQSCCSSTD 714
           ++ +  RI+LS+K++     D
Sbjct: 244 IDKDNERISLSIKETLPGPWD 264


>gi|255327556|ref|ZP_05368623.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296]
 gi|255295450|gb|EET74800.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296]
          Length = 484

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 191/416 (45%), Gaps = 66/416 (15%)

Query: 1013 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1062
            +S     + +++IG +  F E  + +I     G  V+G V K+D++  LL I       +
Sbjct: 1    MSTNIPQVAINDIGDEQAFLEAVEKTIKVFNDGDLVSGQVVKIDHDEVLLDIGYKTEGVI 60

Query: 1063 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1122
             ++   +    +PSE+ E      +G  V   VL+  KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDIDPSEVVE------LGSEVEALVLT--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1123 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            I        + E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------VKENDGVVTGAVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
                          Q ++ K++E+ +      +V LS R+ L+   S   S         
Sbjct: 164  --------------QQLEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSSF------- 199

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
                  + +L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 200  ------LNELEKGQVREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLF 1360
            + V   VL V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F
Sbjct: 253  QPVTVEVLEVDLDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAF 307

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +E+  + GL H+SEL+  HVD  E +   GE+V VKI+ +D ++RRISL +K +
Sbjct: 308  VRVED-GIEGLVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           ++++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   V
Sbjct: 201 NELEKGQVREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEV 259

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G
Sbjct: 260 LEVDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEG 316

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL          +  VG+ V  +I+      RRI+LS 
Sbjct: 317 LVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSL 359



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 157/350 (44%), Gaps = 35/350 (10%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G+V+ +D    ++      + + P   +S    + P +  ++G+E+   VL  + 
Sbjct: 33  GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVELGSEVEALVLTKED 92

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKVKE-NDGVVT-GAVIEVVKGGLILDI--GLRGFLPAS 148

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R S  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELE 204

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P    + L
Sbjct: 205 KGQVREGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQP-VTVEVL 260

Query: 603 LV-LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
            V LD E  +L L A        Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 261 EVDLDRERVSLSLKA-------TQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 660 LTGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+ +  +  DL+ +   VG+ V   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISE-LATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362


>gi|297243679|ref|ZP_06927610.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
 gi|415709775|ref|ZP_11463354.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
 gi|296888430|gb|EFH27171.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
 gi|388055777|gb|EIK78662.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
          Length = 500

 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 184/407 (45%), Gaps = 58/407 (14%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1132 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1369
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            GL H+SEL+  HV+N ET+ +A E V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKANEDVFVKVIDVDLDRRRISLSLKQA 365



 Score = 47.4 bits (111), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 112/254 (44%), Gaps = 21/254 (8%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 516
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 517 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 577 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 634
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            P  VV G V  I++ G F+     + G    S+  +    +        + V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEDVFVKVIDV 351

Query: 695 NSETGRITLSLKQS 708
           + +  RI+LSLKQ+
Sbjct: 352 DLDRRRISLSLKQA 365



 Score = 45.1 bits (105), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 780 THHQLAGATVESGSVIQAA-------ILDVAKAERLVDLSLK 814
              +LA   VE+   +  A       ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKANEDVFVKVIDVDLDRRRISLSLK 363


>gi|403251339|ref|ZP_10917683.1| ribosomal protein S1 [actinobacterium SCGC AAA027-L06]
 gi|402915310|gb|EJX36289.1| ribosomal protein S1 [actinobacterium SCGC AAA027-L06]
          Length = 444

 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 184/413 (44%), Gaps = 64/413 (15%)

Query: 1015 IKPSMLTVSEIGSKLLFEEC------DVSIGQRVTGYVYKVDNEWALLTISRH----LKA 1064
            + PS + V+++GS   F         + + G  V+G V ++D E  LL I       + +
Sbjct: 1    MTPSQIAVNDVGSAEDFLAAIEGTIKNFNDGDLVSGIVVQIDREEVLLDIGYKTEGVIPS 60

Query: 1065 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1124
            +   +    +PSEL        +G  V   VL   KE K  RL+L   +        D+ 
Sbjct: 61   RELSIRHDVDPSEL------VKVGDRVEALVL--QKEDKEGRLILSKKRAQYEQAWGDVE 112

Query: 1125 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1184
                +      ++V G + +++ G  GL+V IG   +      E++ +    P  G    
Sbjct: 113  GKKERD-----EVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLTPYIG---- 161

Query: 1185 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1244
                       Q V+C+++E+ +      +V LS R+ L+   S + +            
Sbjct: 162  -----------QQVECRIIELDKNRN---NVVLSRRAFLEQSQSASRTTF---------- 197

Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
               +  L    +  G + ++ + G F+ L   +D  V +S LS  +++ P +   +G  V
Sbjct: 198  ---LNQLQKGQVRSGVISSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGDEV 253

Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITI 1363
               VL V+   +RV ++LK +      +      +  H +  +V G++ ++  +G FI +
Sbjct: 254  TVEVLEVDFERERVSLSLKAT-----QEDPWQAFARTHTINQVVPGEVTKLVPFGAFIKV 308

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
                + GL H+SEL+E HV+  E + + G+K+ VKI+ +D E+RRISL +K +
Sbjct: 309  -FEGIEGLVHISELAERHVEIPEQVVQVGDKLFVKIIDIDLERRRISLSLKQA 360



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 162/364 (44%), Gaps = 36/364 (9%)

Query: 359 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 418
           +A EG +   +D   G +V G V+ +D    ++      + + P   +S    V P +  
Sbjct: 19  AAIEGTIKNFND---GDLVSGIVVQIDREEVLLDIGYKTEGVIPSRELSIRHDVDPSELV 75

Query: 419 KVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 476
           KVG  +   VL  + K  R+ ++ K+   +     +    E  D ++T G + ++ K G 
Sbjct: 76  KVGDRVEALVLQKEDKEGRLILSKKRAQYEQAWGDVEGKKE-RDEVVT-GTVIEVVKGGL 133

Query: 477 FVRFYNGVQGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 528
            V    G++GF P S  E+       P    ++GQ V+CRI+      +++  SRR  L 
Sbjct: 134 IVDI--GLRGFLPASLVEMRRVRDLTP----YIGQQVECRIIELDKNRNNVVLSRRAFLE 187

Query: 529 FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 587
                +R +  + ++ G + SGV+  +      V +   G   G +    L+  H++H +
Sbjct: 188 QSQSASRTTFLNQLQKGQVRSGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS 244

Query: 588 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYV 644
               V++ G E   ++L +D E   + LS K     + Q+ P  A +  H  N VV G V
Sbjct: 245 ---EVVEVGDEVTVEVLEVDFERERVSLSLK-----ATQEDPWQAFARTHTINQVVPGEV 296

Query: 645 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
             ++  G F++    + G    S+  +       +   VG  +   I+D++ E  RI+LS
Sbjct: 297 TKLVPFGAFIKVFEGIEGLVHISELAERHVEIPEQVVQVGDKLFVKIIDIDLERRRISLS 356

Query: 705 LKQS 708
           LKQ+
Sbjct: 357 LKQA 360



 Score = 43.9 bits (102), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 147/370 (39%), Gaps = 36/370 (9%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI  +     D  +  G + +I++    +      +G  P  EL +    +PS +  VG 
Sbjct: 20  AIEGTIKNFNDGDLVSGIVVQIDREEVLLDIGYKTEGVIPSRELSIRHDVDPSELVKVGD 79

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---VKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  ++       R+ LS        +  D+    +   +V+G V  V    ++V +  
Sbjct: 80  RVEALVLQKEDKEGRLILSKKRAQYEQAWGDVEGKKERDEVVTGTVIEVVKGGLIVDIGL 139

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINS-A 624
           +G+    +P    A  +E   V       G + + +++ LD   +N++LS +  L  S +
Sbjct: 140 RGF----LP----ASLVEMRRVRDLTPYIGQQVECRIIELDKNRNNVVLSRRAFLEQSQS 191

Query: 625 QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
               +  + +    V  G + +I+  G FV  LG + G    S+         S+   VG
Sbjct: 192 ASRTTFLNQLQKGQVRSGVISSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 250

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +L+V+ E  R++LSLK +      A F + H + +     +      G+ +K  
Sbjct: 251 DEVTVEVLEVDFERERVSLSLKATQEDPWQA-FARTHTINQVVPGEVTKLVPFGAFIKVF 309

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 804
           EG      IEG VH       +    E         H ++    V+ G  +   I+D+  
Sbjct: 310 EG------IEGLVH-------ISELAER--------HVEIPEQVVQVGDKLFVKIIDIDL 348

Query: 805 AERLVDLSLK 814
             R + LSLK
Sbjct: 349 ERRRISLSLK 358


>gi|15614199|ref|NP_242502.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
 gi|10174253|dbj|BAB05355.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
          Length = 383

 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 178/380 (46%), Gaps = 54/380 (14%)

Query: 1037 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1096
            S+G  V+G V KV+++ A + +        F +D     SEL       H+ K     VL
Sbjct: 16   SVGDVVSGKVTKVEDKQAFVDVG-------FKVDGIIPISELS----SLHVEK--VSDVL 62

Query: 1097 SINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            S   E +L  L +   +  +S + V      + +Q  +  G+++   ++ ++ G  GLVV
Sbjct: 63   SEGDELELKVLKVEDDELILSKRAVQAEKAWETLQAALDSGEVIEAEVADVVKG--GLVV 120

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             +G  + G +            P S  +    +  S Y +G+ ++ KV+E+ +       
Sbjct: 121  DLG--VRGFI------------PASLVERHYVEDFSDY-KGRTLRLKVVELDKEANKLI- 164

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
              LS R+ LD              +   K  E +  L P  +V+G V+ +T  G F+ + 
Sbjct: 165  --LSQRAVLDE-------------EVEAKKKEVLASLQPGDVVEGTVQRLTDFGAFVDVG 209

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S L+   VE+P +    G  V  +VLSV+P S+RV +++K +      Q E
Sbjct: 210  -GVDGLVHISQLAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIKETLPGPWEQVE 268

Query: 1335 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1394
                  +  GD++ G +KR+ S+G F+ +    + GL H+S+++  H+     +   GE+
Sbjct: 269  ----GTIQPGDVIEGTVKRLVSFGAFVEV-APGVEGLVHISQIANRHIGTPGEVLSEGER 323

Query: 1395 VKVKILKVDKEKRRISLGMK 1414
            V+ K+L V+  ++RISL ++
Sbjct: 324  VQAKVLDVNISEKRISLSIR 343



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 141/341 (41%), Gaps = 21/341 (6%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G VV GKV  V+   A V     V  + P+  +S   + K       G EL  +VL V+ 
Sbjct: 18  GDVVSGKVTKVEDKQAFVDVGFKVDGIIPISELSSLHVEKVSDVLSEGDELELKVLKVED 77

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
             + ++ +    +     L +  ++ +  +    +  + K G  V    GV+GF P S L
Sbjct: 78  DELILSKRAVQAEKAWETLQAALDSGE--VIEAEVADVVKGGLVVDL--GVRGFIPAS-L 132

Query: 494 GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSL 547
                 E  S Y  G+ ++ +++      + +  S+R  L   ++  +      ++ G +
Sbjct: 133 VERHYVEDFSDYK-GRTLRLKVVELDKEANKLILSQRAVLDEEVEAKKKEVLASLQPGDV 191

Query: 548 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 606
           V G V  +T     V V   G   G +    LA H         V+K G     ++L +D
Sbjct: 192 VEGTVQRLTDFGAFVDV---GGVDGLVHISQLAHH--RVETPAEVVKEGDAVKVKVLSVD 246

Query: 607 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
            +S  + LS K +L    +Q+      I P  V+ G V  ++  G FV     + G    
Sbjct: 247 PDSERVSLSIKETLPGPWEQVEG---TIQPGDVIEGTVKRLVSFGAFVEVAPGVEGLVHI 303

Query: 667 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
           S+  +       +    G+ V++ +LDVN    RI+LS+++
Sbjct: 304 SQIANRHIGTPGEVLSEGERVQAKVLDVNISEKRISLSIRE 344



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            L++L  GD+V G ++R+  +G F+ +   +  GL H+S+L+   V+    + + G+ VKV
Sbjct: 183  LASLQPGDVVEGTVQRLTDFGAFVDVGGVD--GLVHISQLAHHRVETPAEVVKEGDAVKV 240

Query: 1398 KILKVDKEKRRISLGMKSS 1416
            K+L VD +  R+SL +K +
Sbjct: 241  KVLSVDPDSERVSLSIKET 259



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           + ++PG VV+G V  +  FGA V   GGV  L  +  ++   +  P +  K G  +  +V
Sbjct: 184 ASLQPGDVVEGTVQRLTDFGAFVDV-GGVDGLVHISQLAHHRVETPAEVVKEGDAVKVKV 242

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   S+R++++ K+TL      +  +        +  G + ++   G FV    GV+G
Sbjct: 243 LSVDPDSERVSLSIKETLPGPWEQVEGTIQPGD---VIEGTVKRLVSFGAFVEVAPGVEG 299

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               S++       P  +   G+ V+ +++    + +RI+LS 
Sbjct: 300 LVHISQIANRHIGTPGEVLSEGERVQAKVLDVNISEKRISLSI 342



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 128/295 (43%), Gaps = 48/295 (16%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + G+ +   V+ ++KE    +L+L   Q  + D+ V+    
Sbjct: 127  FIPASLVERHYVEDFSD--YKGRTLRLKVVELDKEAN--KLILS--QRAVLDEEVEAKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             +   +  GD+V G + ++     G  V +G  + G VH ++L +  V  P     EG  
Sbjct: 181  EVLASLQPGDVVEGTVQRLTDF--GAFVDVG-GVDGLVHISQLAHHRVETPAEVVKEGDA 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      +  V LS++ +L G               P + +E
Sbjct: 238  -----------VKVKVLSVDPD---SERVSLSIKETLPG---------------PWEQVE 268

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
                + P  +++G VK + S G F+ ++  ++  V +S +++ ++ +P +    G+ V  
Sbjct: 269  GT--IQPGDVIEGTVKRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPGEVLSEGERVQA 326

Query: 1307 RVLSVEPLSKRVEVTLK--------TSDSRTASQSEINNLSNLHVGDIVIGQIKR 1353
            +VL V    KR+ ++++            R   +S     S   +GD++  ++K+
Sbjct: 327  KVLDVNISEKRISLSIRELLDDAGSNQSDREVYESTNEESSGFSLGDMIGDELKK 381



 Score = 44.3 bits (103), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 112/279 (40%), Gaps = 46/279 (16%)

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 602
           +G +VSG V  V      V V   G+   G IP   L+    H   +  V+  G E  +L
Sbjct: 17  VGDVVSGKVTKVEDKQAFVDV---GFKVDGIIPISELSSL--HVEKVSDVLSEGDEL-EL 70

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
            VL  E   L+LS +   + + +   +  + +    V+   V ++++ G  V    R  G
Sbjct: 71  KVLKVEDDELILSKRA--VQAEKAWETLQAALDSGEVIEAEVADVVKGGLVVDLGVR--G 126

Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 722
           F P S        D S   Y G+++R  +++++ E  ++ LS +       +A       
Sbjct: 127 FIPASLVERHYVEDFSD--YKGRTLRLKVVELDKEANKLILSQRAVLDEEVEAK------ 178

Query: 723 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 782
             +E +A LQ                 G V+EG V    DFG   +F +   V G +   
Sbjct: 179 -KKEVLASLQP----------------GDVVEGTVQRLTDFG---AFVDVGGVDGLVHIS 218

Query: 783 QLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 814
           QLA   VE+       G  ++  +L V      V LS+K
Sbjct: 219 QLAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIK 257



 Score = 41.6 bits (96), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 313 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 372
             V IS +A   V    +  KEG  V+V++L         +  +K +           ++
Sbjct: 213 GLVHISQLAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIKETLPGPWEQVEGTIQ 272

Query: 373 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 432
           PG V++G V  + SFGA V+   GV+ L  +  ++   I  PG+    G  +  +VL V 
Sbjct: 273 PGDVIEGTVKRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPGEVLSEGERVQAKVLDVN 332

Query: 433 --SKRITVTHKKTL 444
              KRI+++ ++ L
Sbjct: 333 ISEKRISLSIRELL 346


>gi|408410414|ref|ZP_11181631.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
 gi|409350333|ref|ZP_11233493.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
 gi|407875408|emb|CCK83437.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
 gi|407877499|emb|CCK85551.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
          Length = 401

 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 138/271 (50%), Gaps = 45/271 (16%)

Query: 1181 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1235
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1236 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1269
                    T++D P K      H E IE+            L    +V+G V  +T  G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTQFGA 212

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSP 271

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
              Q+     +NL+ GDI+ G++K + ++G F+ + +  + GL HVSE+S  HVD    + 
Sbjct: 272  FEQA----TANLNEGDIIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEISNKHVDKPSDVL 326

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1420
              G+KVKVK+L VD  +RRISL +K +  +N
Sbjct: 327  TVGQKVKVKVLNVDPSERRISLSIKQADPEN 357



 Score = 74.3 bits (181), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 121/251 (48%), Gaps = 24/251 (9%)

Query: 288 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 344
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 345 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
             H E +     +  AFE +    S +  G VV+G+V  +  FGA V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTQFGAFVDI-GGVDGLVHIS 226

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRL 462
            +S   + KP    KVG ++  +V+G+ +   RI+++ K+T         S + +AT  L
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTE-------PSPFEQATANL 279

Query: 463 ----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
               I  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++ 
Sbjct: 280 NEGDIIEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNV 339

Query: 519 IPASRRINLSF 529
            P+ RRI+LS 
Sbjct: 340 DPSERRISLSI 350



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 34/199 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD+V GR+S++     G  V IG  + G VH +E+    V  P         D L     
Sbjct: 197  GDVVEGRVSRLTQF--GAFVDIG-GVDGLVHISEISYKHVDKP--------SDVLK---V 242

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I                     +  N   LS     P    +   +L+  
Sbjct: 243  GQDVKVKVIGID--------------------NDRNRISLSIKQTEPSPFEQATANLNEG 282

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             I++G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+V+P 
Sbjct: 283  DIIEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPS 342

Query: 1315 SKRVEVTLKTSDSRTASQS 1333
             +R+ +++K +D   AS S
Sbjct: 343  ERRISLSIKQADPENASSS 361



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 151/369 (40%), Gaps = 45/369 (12%)

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVKPGKKFKVGA 422
           +VKPG +V   V++V+     V   G GV+ +      +        E VKPG  FK   
Sbjct: 16  EVKPGDIVDVNVLSVEDGQINVGVQGAGVEGVITRRDFTNDRSVNLREAVKPGDTFKA-- 73

Query: 423 ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 482
             V R  G   +        T VK + A      +  +     G +T   + G  V    
Sbjct: 74  -YVVRRAGGDKENGEFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSSVRGGLLVDV-- 130

Query: 483 GVQGFAPRSELG------LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPT 534
           G +GF P S +       L P        ++G+ +K +I    PA  R+ LS   +++  
Sbjct: 131 GTRGFLPASLISNRFVSDLKP--------YIGKTIKVKITEIDPAKNRLILSHKELIEEE 182

Query: 535 RVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 590
           R    + V     +G +V G V  +T     V +   G   G +    ++   +H     
Sbjct: 183 REQAFENVASQLVVGDVVEGRVSRLTQFGAFVDI---GGVDGLVHISEIS--YKHVDKPS 237

Query: 591 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 649
            V+K G +   +++ +DN+ + + LS K +  +  +Q     ++++   ++ G V ++  
Sbjct: 238 DVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSPFEQA---TANLNEGDIIEGEVKSLTN 294

Query: 650 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS- 708
            G FV     + G    S+  +      S    VGQ V+  +L+V+    RI+LS+KQ+ 
Sbjct: 295 FGAFVEVADGIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPSERRISLSIKQAD 354

Query: 709 ---CCSSTD 714
                SS D
Sbjct: 355 PENASSSND 363



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 140/365 (38%), Gaps = 53/365 (14%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 538
           GV+G   R +   D           G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLREAVKPGDTFKAYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 539 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 596 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 654
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  + + G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTQFGAFV 214

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSP-- 271

Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
                     E+  A L                  G +IEG+V    +FG  V  E    
Sbjct: 272 ---------FEQATANLNE----------------GDIIEGEVKSLTNFGAFV--EVADG 304

Query: 775 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 827
           + G +   +++   V+        G  ++  +L+V  +ER + LS+K    +    +N  
Sbjct: 305 IQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPSERRISLSIKQADPENASSSNDR 364

Query: 828 RQAQK 832
            +A++
Sbjct: 365 PRARR 369


>gi|430750092|ref|YP_007213000.1| 30S ribosomal protein S1 [Thermobacillus composti KWC4]
 gi|430734057|gb|AGA58002.1| ribosomal protein S1 [Thermobacillus composti KWC4]
          Length = 411

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 178/387 (45%), Gaps = 66/387 (17%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ-----RRFHIGKAVTG 1093
            G  V G V K+++  A +++        +  D      EL   Q         +G+ +  
Sbjct: 38   GDIVKGTVIKIEDNQAYVSLG-------YKYDGVIPLRELSAVQLDNAADAVQVGQELEL 90

Query: 1094 HVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1151
             V+SI+ +K+  RLVL       S + VD     D +Q    +G+++   ++ ++ G  G
Sbjct: 91   KVISIDDDKE--RLVL-------SKRQVDAGKAWDRLQEQFEKGEVLEVTVADVVKG--G 139

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
            LVV +G  + G +            P S  +    +  S Y +GQ ++ K+ E+ R    
Sbjct: 140  LVVDVG--VRGFI------------PASMVERHYVEDFSSY-KGQTLRVKIKELDRE--- 181

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
            T  V LS +  L+     N   +             +E L P  I++G V+ +T  G F+
Sbjct: 182  TNKVILSAKEVLEEEYEANKRRI-------------MESLEPGQIIEGTVQRLTPFGAFV 228

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
             +   +D  V +S L+  +V  P      G+ V  +VL V+P + ++ +++K      A+
Sbjct: 229  DIG-GIDGLVHVSELAWEHVAHPRDVVSEGQQVKVKVLKVDPEAGKISLSIK------AA 281

Query: 1332 QSEINNLS--NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
            Q     L+    H GDIV G +KR+ S+G F+ +    + GL H+S+++  H+     + 
Sbjct: 282  QPGPWELAADKFHNGDIVTGTVKRIVSFGAFVEV-APGVEGLVHISQIAHRHIATPHEVL 340

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + G++VK K+L  +  ++RISL +K +
Sbjct: 341  KEGQEVKAKVLDFNPAEKRISLSIKET 367



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 148/357 (41%), Gaps = 43/357 (12%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K G +VKG VI ++   A V        + PL  +S  ++       +VG EL  +V+ 
Sbjct: 35  LKKGDIVKGTVIKIEDNQAYVSLGYKYDGVIPLRELSAVQLDNAADAVQVGQELELKVIS 94

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 482
           +         K+ LV SK  +     +A DRL        +    +  + K G  V    
Sbjct: 95  IDD------DKERLVLSKRQV--DAGKAWDRLQEQFEKGEVLEVTVADVVKGGLVVDV-- 144

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPT 534
           GV+GF P S +      E  S Y  GQ ++ +I      + ++ LS        +     
Sbjct: 145 GVRGFIPASMVERHY-VEDFSSYK-GQTLRVKIKELDRETNKVILSAKEVLEEEYEANKR 202

Query: 535 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 594
           R+ E   ++ G ++ G V  +TP    V +   G   G +    LA   EH    + V+ 
Sbjct: 203 RIMES--LEPGQIIEGTVQRLTPFGAFVDI---GGIDGLVHVSELA--WEHVAHPRDVVS 255

Query: 595 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETG 651
            G +   ++L +D E+  + LS     I +AQ  P +  A   H   +V G V  I+  G
Sbjct: 256 EGQQVKVKVLKVDPEAGKISLS-----IKAAQPGPWELAADKFHNGDIVTGTVKRIVSFG 310

Query: 652 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            FV     + G    S+      A   +    GQ V++ +LD N    RI+LS+K++
Sbjct: 311 AFVEVAPGVEGLVHISQIAHRHIATPHEVLKEGQEVKAKVLDFNPAEKRISLSIKET 367



 Score = 41.6 bits (96), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 115/284 (40%), Gaps = 48/284 (16%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHL-ADHLEHATVMKSVIKPGYEF 599
           +K G +V G V  +  N   V +   GY   G IP   L A  L++A      ++ G E 
Sbjct: 35  LKKGDIVKGTVIKIEDNQAYVSL---GYKYDGVIPLRELSAVQLDNAA---DAVQVGQEL 88

Query: 600 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
           + +++ +D++   L+LS +   +++ +             V+   V ++++ G  V    
Sbjct: 89  ELKVISIDDDKERLVLSKRQ--VDAGKAWDRLQEQFEKGEVLEVTVADVVKGGLVVDVGV 146

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 718
           R  GF P S        D S   Y GQ++R  I +++ ET ++ LS K+           
Sbjct: 147 R--GFIPASMVERHYVEDFSS--YKGQTLRVKIKELDRETNKVILSAKE----------- 191

Query: 719 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 778
               +LEE+        +  ++ + +E    G +IEG V     FG  V       + G 
Sbjct: 192 ----VLEEE--------YEANKRRIMESLEPGQIIEGTVQRLTPFGAFVDI---GGIDGL 236

Query: 779 ITHHQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLKT 815
           +   +LA          V  G  ++  +L V      + LS+K 
Sbjct: 237 VHVSELAWEHVAHPRDVVSEGQQVKVKVLKVDPEAGKISLSIKA 280


>gi|222151374|ref|YP_002560530.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402]
 gi|222120499|dbj|BAH17834.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402]
          Length = 387

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 108/191 (56%), Gaps = 16/191 (8%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  ++++++    +++G V  +T+ G F+ +  ++D  V +S ++  +++  E    IG 
Sbjct: 181  KKEQRLDEIEVGSVIEGEVLRITNFGAFVDIG-EVDGLVHISQITHDHIDKVEDALSIGD 239

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             V  +VLSV+  ++RV +++K +        E        +GDIV G++ R+ ++G F+ 
Sbjct: 240  KVKVKVLSVDKEAERVSLSMKAALPGPFETIE----EKFSIGDIVDGEVVRLANFGAFVE 295

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK-------- 1414
            I +  L GL H+S++S DH+ N   +   G+KVKVKIL ++KE++RI L +K        
Sbjct: 296  I-DKGLQGLVHISQISHDHIGNPSEVLEPGQKVKVKILDINKEEKRIGLSIKATQEQVED 354

Query: 1415 --SSYFKNDAD 1423
              ++Y  ND++
Sbjct: 355  FDTTYLSNDSN 365



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            +G+++  ++  ++    RV +  K  ++      +   L  + VG ++ G++ R+ ++G 
Sbjct: 148  VGQVLTLKIEELDQEKNRVILNHKVIEAEENKVKKEQRLDEIEVGSVIEGEVLRITNFGA 207

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            F+ I   +  GL H+S+++ DH+D +E     G+KVKVK+L VDKE  R+SL MK++
Sbjct: 208  FVDIGEVD--GLVHISQITHDHIDKVEDALSIGDKVKVKVLSVDKEAERVSLSMKAA 262



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 6/179 (3%)

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           +++ G V++G+V+ + +FGA V   G V  L  +  ++   I K      +G ++  +VL
Sbjct: 188 EIEVGSVIEGEVLRITNFGAFVDI-GEVDGLVHISQITHDHIDKVEDALSIGDKVKVKVL 246

Query: 430 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
            V  +++R++++ K  L      I   ++      I  G + ++   G FV    G+QG 
Sbjct: 247 SVDKEAERVSLSMKAALPGPFETIEEKFSIGD---IVDGEVVRLANFGAFVEIDKGLQGL 303

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGS 546
              S++  D    PS +   GQ VK +I+      +RI LS      +V + D   L +
Sbjct: 304 VHISQISHDHIGNPSEVLEPGQKVKVKILDINKEEKRIGLSIKATQEQVEDFDTTYLSN 362



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 152/367 (41%), Gaps = 36/367 (9%)

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           +++ G  VKG V A++    ++   G     + P+  +S   I    +  ++G E+   V
Sbjct: 12  EIQEGDKVKGTVQAIEEKHVVLNLDGAKYDGIIPISQLSSLHIENAEEVVQIGDEIEAFV 71

Query: 429 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVRFYNG 483
             ++ K     +   L K +L    S+ E+      +G   + E     K G  V    G
Sbjct: 72  TKIEDKEEDGHY--ILSKRQLDESESF-ESLKEKFENGETLEAEVKEAVKGGLVVDV--G 126

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSED- 539
           ++GF P S +  +   E  S Y VGQV+  +I        R+ L+  +   +  +V ++ 
Sbjct: 127 LRGFIPASLISTNY-IEDFSSY-VGQVLTLKIEELDQEKNRVILNHKVIEAEENKVKKEQ 184

Query: 540 --DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHATVMKSVI 593
             D +++GS++ G V  +T     V +   G   G +    +     D +E A  +   +
Sbjct: 185 RLDEIEVGSVIEGEVLRITNFGAFVDI---GEVDGLVHISQITHDHIDKVEDALSIGDKV 241

Query: 594 KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
           K      ++L +D E+  + LS K +L    + +    S      +V G V  +   G F
Sbjct: 242 KV-----KVLSVDKEAERVSLSMKAALPGPFETIEEKFS---IGDIVDGEVVRLANFGAF 293

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK--QSCCS 711
           V     L G    S+       + S+    GQ V+  ILD+N E  RI LS+K  Q    
Sbjct: 294 VEIDKGLQGLVHISQISHDHIGNPSEVLEPGQKVKVKILDINKEEKRIGLSIKATQEQVE 353

Query: 712 STDASFM 718
             D +++
Sbjct: 354 DFDTTYL 360



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 27/224 (12%)

Query: 911  RLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
            R++L  K I E E +  K+ ++    +VGS+++ E+  I      +  G    G +HI++
Sbjct: 165  RVILNHKVI-EAEENKVKKEQRLDEIEVGSVIEGEVLRITNFGAFVDIG-EVDGLVHISQ 222

Query: 971  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1030
            +  D  + VE+  S   IG  V  ++++  +K   + S   + ++     T+ E      
Sbjct: 223  ITHDHIDKVEDALS---IGDKVKVKVLS-VDKEAERVSLSMKAALPGPFETIEE------ 272

Query: 1031 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFH 1086
                  SIG  V G V ++ N  A + I + L+  + I   +++    PSE+ E      
Sbjct: 273  ----KFSIGDIVDGEVVRLANFGAFVEIDKGLQGLVHISQISHDHIGNPSEVLE------ 322

Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISD-KTVDISNDNMQ 1129
             G+ V   +L INKE+K + L ++  Q+ + D  T  +SND+ Q
Sbjct: 323  PGQKVKVKILDINKEEKRIGLSIKATQEQVEDFDTTYLSNDSNQ 366



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 52/245 (21%)

Query: 605 LDNESSNLLLS-----AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           LD E + ++L+     A+ + +   Q+L      I   SV+ G V  I   G FV  +G 
Sbjct: 159 LDQEKNRVILNHKVIEAEENKVKKEQRL----DEIEVGSVIEGEVLRITNFGAFVD-IGE 213

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+        +     +G  V+  +L V+ E  R++LS+K +     +     
Sbjct: 214 VDGLVHISQITHDHIDKVEDALSIGDKVKVKVLSVDKEAERVSLSMKAALPGPFET---- 269

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF- 778
               +EEK                   F IG +++G+V    +FG  V  +    + G  
Sbjct: 270 ----IEEK-------------------FSIGDIVDGEVVRLANFGAFVEID--KGLQGLV 304

Query: 779 ----ITHHQLAGAT--VESGSVIQAAILDVAKAERLVDLSLKTV------FIDRFREANS 826
               I+H  +   +  +E G  ++  ILD+ K E+ + LS+K        F   +   +S
Sbjct: 305 HISQISHDHIGNPSEVLEPGQKVKVKILDINKEEKRIGLSIKATQEQVEDFDTTYLSNDS 364

Query: 827 NRQAQ 831
           N++ Q
Sbjct: 365 NQENQ 369


>gi|297626694|ref|YP_003688457.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp.
            shermanii CIRM-BIA1]
 gi|296922459|emb|CBL57032.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp.
            shermanii CIRM-BIA1]
          Length = 484

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1018 SMLTVSEIGSKLLFEEC-DVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + V +IGS   FE   D +I     G  V G V KVD +  LL I       + ++  
Sbjct: 9    NQVAVDDIGSAEAFEAAVDSTIKYFNDGDIVKGTVVKVDRDEVLLDIGYKTEGVIPSKEL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+        +G  +    L   KE K  RL+L   +        + +   
Sbjct: 69   SIKHDVDPFEV------VSVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGT 115

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
            ++    E  +V G + +++ G  GL+V IG   +      E++ +    P  G       
Sbjct: 116  IEKIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG------- 166

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
                    Q ++ K++E+ +      +V LS R+ L+   S    +              
Sbjct: 167  --------QELEAKIIELDKNRN---NVVLSRRAWLEQTQSETRHNF------------- 202

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            ++ L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   
Sbjct: 203  LQQLQKGQIRKGIVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVE 261

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIEN 1365
            VL V+   +RV ++LK      A+Q +   L +  H +G+IV G++ ++  +G F+ +E 
Sbjct: 262  VLDVDMERERVSLSLK------ATQEDPWQLFARTHQIGEIVPGKVTKLVPFGAFVRVEE 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL HVSEL+E HV+  E +   G++V VKI+ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHVSELAERHVEIPEQVVSVGDEVLVKIIDIDLERRRISLSLKQA 365



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 158/368 (42%), Gaps = 32/368 (8%)

Query: 355 ILKASAFEGLVFTHSDVK---PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 411
           I  A AFE  V   S +K    G +VKG V+ VD    ++      + + P   +S    
Sbjct: 16  IGSAEAFEAAV--DSTIKYFNDGDIVKGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHD 73

Query: 412 VKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           V P +   VG E+   V   + K  R+ ++ K+   +     +    E  D ++T G + 
Sbjct: 74  VDPFEVVSVGDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVI 131

Query: 470 KIEKHGCFVRFYNGVQGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPA 521
           ++ K G  V    G++GF P S  E+      +P    +VGQ ++ +I+      +++  
Sbjct: 132 EVVKGGLIVDI--GLRGFLPASLVEMRRVRDLQP----YVGQELEAKIIELDKNRNNVVL 185

Query: 522 SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA- 580
           SRR  L      TR +    ++ G +  G+V  +      V +   G   G +    L+ 
Sbjct: 186 SRRAWLEQTQSETRHNFLQQLQKGQIRKGIVSSIVNFGAFVDL---GGVDGLVHVSELSW 242

Query: 581 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 640
            H++H + +  V +P     ++L +D E   + LS K +      QL +    I    +V
Sbjct: 243 KHIDHPSEVVEVGQPVTV--EVLDVDMERERVSLSLKATQ-EDPWQLFARTHQI--GEIV 297

Query: 641 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 700
            G V  ++  G FVR    + G    S+  +       +   VG  V   I+D++ E  R
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHVSELAERHVEIPEQVVSVGDEVLVKIIDIDLERRR 357

Query: 701 ITLSLKQS 708
           I+LSLKQ+
Sbjct: 358 ISLSLKQA 365


>gi|328944315|ref|ZP_08241779.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829]
 gi|327491234|gb|EGF23009.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829]
          Length = 409

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 188/409 (45%), Gaps = 65/409 (15%)

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGK 1089
             D   G  VTG V K++++  LL I       + A+   +     P EL       H+G 
Sbjct: 41   TDFDEGDLVTGTVVKIEHDEVLLDIGFKSEGVIPARELSIRKDASPEEL------VHMGD 94

Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILS 1147
             +   VL   KE K  RL+L       S K  +     + ++     G  V G + +++ 
Sbjct: 95   TIEALVL--QKEDKEGRLIL-------SKKRAEYERAWNAVEEKFKAGVNVEGEVIEVVK 145

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            G  GL++ IG  L G +            P S  D  +   LS Y  G  ++ +V+E+ R
Sbjct: 146  G--GLILDIG--LRGFL------------PASLVDLRRVKDLSAY-MGTRIEARVIEMDR 188

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                  +V LS R  L+       S++ T              L P M ++G V ++   
Sbjct: 189  N---RNNVVLSRRVVLEAARKAERSEILTK-------------LKPGMKLKGTVSSIVEF 232

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ L   +D  + +S LS  +V  P +   +G+ V  +VL ++   +R+ + LK    
Sbjct: 233  GAFVDLG-GIDGLIHISELSWNHVNHPAEVVKVGQEVEVQVLDIDLNRERISLGLK---- 287

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
            +T        +    +G IV G + ++ ++G F+ + N  + GL H+SE+++ HVD    
Sbjct: 288  QTTEDPWRVLVKKYPIGAIVEGTVTKLVTFGAFVDLGN-GVEGLVHISEMAKAHVDAPAQ 346

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            + + G+ V+VK++++D E+RRISL +K++     A+ L    +EE+++A
Sbjct: 347  VCKVGDVVQVKVMEIDLERRRISLSIKAA-----AETLGTDQDEEANDA 390



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +KPGM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +VL 
Sbjct: 216 LKPGMKLKGTVSSIVEFGAFVDL-GGIDGLIHISELSWNHVNHPAEVVKVGQEVEVQVLD 274

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           +    +RI++  K+T       ++  Y       I  G +TK+   G FV   NGV+G  
Sbjct: 275 IDLNRERISLGLKQTTEDPWRVLVKKYPIGA---IVEGTVTKLVTFGAFVDLGNGVEGLV 331

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SE+       P+ +  VG VV+ ++M      RRI+LS 
Sbjct: 332 HISEMAKAHVDAPAQVCKVGDVVQVKVMEIDLERRRISLSI 372



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 157/390 (40%), Gaps = 62/390 (15%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G + KIE     +      +G  P  EL +     P  + H+G  ++  ++      
Sbjct: 48  LVTGTVVKIEHDEVLLDIGFKSEGVIPARELSIRKDASPEELVHMGDTIEALVLQKEDKE 107

Query: 523 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
            R+ LS     +      V E    K G  V G V  V    +++ +  +G+   ++   
Sbjct: 108 GRLILSKKRAEYERAWNAVEEK--FKAGVNVEGEVIEVVKGGLILDIGLRGFLPASLVDL 165

Query: 578 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 636
                L  +  M + I+      +++ +D   +N++LS +  L  + +   S+  + + P
Sbjct: 166 RRVKDL--SAYMGTRIEA-----RVIEMDRNRNNVVLSRRVVLEAARKAERSEILTKLKP 218

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              + G V +I+E G FV  LG + G    S+         ++   VGQ V   +LD++ 
Sbjct: 219 GMKLKGTVSSIVEFGAFVD-LGGIDGLIHISELSWNHVNHPAEVVKVGQEVEVQVLDIDL 277

Query: 697 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVI 753
              RI+L LKQ+                              +E  W   V+ + IG+++
Sbjct: 278 NRERISLGLKQT------------------------------TEDPWRVLVKKYPIGAIV 307

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAE 806
           EG V +   FG  V     + V G +   ++A A V++       G V+Q  ++++    
Sbjct: 308 EGTVTKLVTFGAFVDL--GNGVEGLVHISEMAKAHVDAPAQVCKVGDVVQVKVMEIDLER 365

Query: 807 RLVDLSLK----TVFIDRFREANSNRQAQK 832
           R + LS+K    T+  D+  EAN    A +
Sbjct: 366 RRISLSIKAAAETLGTDQDEEANDAAPADE 395


>gi|218290944|ref|ZP_03495001.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239109|gb|EED06312.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 385

 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 169/391 (43%), Gaps = 56/391 (14%)

Query: 1030 LFEECDVSIGQRVTGYVYKVDNEWALLTISR----HLKAQLFILDSAYEPSELQEFQRRF 1085
            +  +  V  G  VTG V  VD+    + +      H+  Q         PS++       
Sbjct: 8    MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDV------V 61

Query: 1086 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1145
             +G  VT  VL ++ E   + L  R  +   +        + MQ  +  G+ +   I  +
Sbjct: 62   SVGSTVTAQVLKVDMESGHVTLSKRRAEQASA-------WERMQQLLESGEPIEVEIRDV 114

Query: 1146 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
            + G  GLV  +G   +               P S  D    + L  + +GQ ++ KV+E+
Sbjct: 115  VKG--GLVADVGVRAF--------------IPASLVDRHFVENLEQF-KGQKLRAKVVEV 157

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
                       LS R+ L+  S   +  L              E+L P  +++G V+ +T
Sbjct: 158  DPHKNKLI---LSRRAVLEEESEARARKL-------------FEELKPGDVIEGTVQRLT 201

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
              G F+ +    D  V +S LS  +V  P +    G  V  RVL V+P + R+ +++K +
Sbjct: 202  DFGAFVDVG-GADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAA 260

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
                  +         H GD+V G ++RV  +G F+ +    L GL HVS++S +HVD  
Sbjct: 261  ----LPEPWETYAHEFHPGDVVQGVVRRVVDFGAFVEL-RPGLEGLVHVSQISNEHVDKP 315

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + + G++V V++L VD E++RISL M+ S
Sbjct: 316  SDVLQPGQEVTVRVLSVDPERKRISLSMRDS 346



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 145/358 (40%), Gaps = 31/358 (8%)

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
           + T + V+ G VV G+V AVD  G  V  P G +       +S      P     VG+ +
Sbjct: 8   MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTV 67

Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVR 479
             +VL V  +   VT  K     + A  +S  E   +L+  G   ++E     K G    
Sbjct: 68  TAQVLKVDMESGHVTLSK-----RRAEQASAWERMQQLLESGEPIEVEIRDVVKGGLVAD 122

Query: 480 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
              GV+ F P S +  D     +     GQ ++ +++   P   ++ LS        SE 
Sbjct: 123 V--GVRAFIPASLV--DRHFVENLEQFKGQKLRAKVVEVDPHKNKLILSRRAVLEEESEA 178

Query: 540 DLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 592
              KL      G ++ G V  +T     V V   G + G +    L+  H+ H +    V
Sbjct: 179 RARKLFEELKPGDVIEGTVQRLTDFGAFVDV---GGADGLVHISELSFSHVNHPS---EV 232

Query: 593 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 651
           ++ G     ++L +D E+  + LS K +L    +     A   HP  VV G V  +++ G
Sbjct: 233 VREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETY---AHEFHPGDVVQGVVRRVVDFG 289

Query: 652 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
            FV     L G    S+  +      S     GQ V   +L V+ E  RI+LS++ S 
Sbjct: 290 AFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSS 347



 Score = 41.2 bits (95), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 153/363 (42%), Gaps = 36/363 (9%)

Query: 96  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGID----VK 150
           L + L+   V+EG V+T  V +++DHG  +   LP  + G +    L+   G      V 
Sbjct: 5   LREMLTDAAVREGDVVTGEVTAVDDHGVTV--ALPHGYEGHISPQELSAVPGTHPSDVVS 62

Query: 151 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 210
            G  +   V  +D     V LS      +    +  +     LL  G  +   ++ +++ 
Sbjct: 63  VGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQQ-----LLESGEPIEVEIRDVVKG 117

Query: 211 GVM--LSFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 267
           G++  +    +   + VD   ++N         +  + +K+ A+++ VDP    + L+  
Sbjct: 118 GLVADVGVRAFIPASLVDRHFVENL--------EQFKGQKLRAKVVEVDPHKNKLILSRR 169

Query: 268 PYL-----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
             L        R     +K GD+ + +     D   G  +D+          V IS+++ 
Sbjct: 170 AVLEEESEARARKLFEELKPGDVIEGTVQRLTD--FGAFVDVGGAD----GLVHISELSF 223

Query: 323 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
             V    +  +EG  V+VR+L      G  +  +KA+  E       +  PG VV+G V 
Sbjct: 224 SHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFHPGDVVQGVVR 283

Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 440
            V  FGA V+   G++ L  +  +S   + KP    + G E+  RVL V  + KRI+++ 
Sbjct: 284 RVVDFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSM 343

Query: 441 KKT 443
           + +
Sbjct: 344 RDS 346


>gi|380302401|ref|ZP_09852094.1| 30S ribosomal protein S1 [Brachybacterium squillarum M-6-3]
          Length = 494

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 184/402 (45%), Gaps = 65/402 (16%)

Query: 1026 GSKLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPS 1076
            G+  L    D +I     G  V G V KVD++  LL I       + ++   +     P 
Sbjct: 16   GADELMAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPD 75

Query: 1077 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1136
            E+ E      +G  +   VL   KE K  RL+L   +        + +   ++    +  
Sbjct: 76   EVVE------VGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIEQIKEDEG 122

Query: 1137 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1196
            +V GR+ +++ G  GL+V IG   +      E++ +    P  G               Q
Sbjct: 123  VVTGRVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG---------------Q 165

Query: 1197 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1256
             ++ K++E+ +      +V LS R+ L+   S   SD              ++ L    +
Sbjct: 166  EIEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSDF-------------LQTLQKGQV 209

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
             +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +
Sbjct: 210  REGAVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLDVDMDRE 268

Query: 1317 RVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
            RV ++LK      A+Q +   L +  H +G++V G++ ++  +G F+ +E+  + GL H+
Sbjct: 269  RVSLSLK------ATQEDPWQLFARTHAIGEVVPGKVTKLVPFGAFVRVED-GIEGLVHI 321

Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            SEL++ HVD  E +    + V VK++ +D E+RRISL +K +
Sbjct: 322  SELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQA 363



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 2/159 (1%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   VL 
Sbjct: 204 LQKGQVREGAVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLD 262

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           V   R  V+      +     L +   A   ++  G +TK+   G FVR  +G++G    
Sbjct: 263 VDMDRERVSLSLKATQEDPWQLFARTHAIGEVVP-GKVTKLVPFGAFVRVEDGIEGLVHI 321

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           SEL       P  +  V Q V  +++      RRI+LS 
Sbjct: 322 SELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSL 360



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 163/392 (41%), Gaps = 44/392 (11%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEIEALVLQKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEQIKE--DEGVVTGRVIEVVKGGLIVDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSDFLQTLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  G V  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 206 KGQVREGAVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVKVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 260 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHAIGEVVPGKVTKLVPFGAFVRVEDGI 315

Query: 661 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSC----CSSTDA 715
            G    S+    +  DL  +   V Q V   ++D++ E  RI+LSLKQ+         D+
Sbjct: 316 EGLVHISELAQ-RHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQANEGVDPEGDDS 374

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
           +F    +       M      NG E K+ +GF
Sbjct: 375 TFDPALY------GMAAEYDENG-EYKYPDGF 399



 Score = 45.1 bits (105), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 145/375 (38%), Gaps = 64/375 (17%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G + K++     +      +G  P  EL +     P  +  VG  ++  ++  
Sbjct: 32  NDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEIEALVLQK 91

Query: 519 IPASRRINLSFMMKP--------TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 570
                R+ LS              ++ ED+      +V+G V  V    ++V +  +G+ 
Sbjct: 92  EDKEGRLILSKKRAQYERAWGTIEQIKEDE-----GVVTGRVIEVVKGGLIVDIGLRGFL 146

Query: 571 KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPS 629
             ++        +E   V       G E + +++ LD   +N++LS +  L  +   + S
Sbjct: 147 PASL--------VEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRS 198

Query: 630 D-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 688
           D    +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V+
Sbjct: 199 DFLQTLQKGQVREGAVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQKVK 257

Query: 689 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 748
             +LDV+ +  R++LSLK +                +E    L +  H            
Sbjct: 258 VEVLDVDMDRERVSLSLKAT----------------QEDPWQLFARTH-----------A 290

Query: 749 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG---------ATVESGSVIQAAI 799
           IG V+ GKV +   FG  V  E+   + G +   +LA           TV+    ++  +
Sbjct: 291 IGEVVPGKVTKLVPFGAFVRVEDG--IEGLVHISELAQRHVDLPEQVVTVDQDVFVK--V 346

Query: 800 LDVAKAERLVDLSLK 814
           +D+    R + LSLK
Sbjct: 347 IDIDLERRRISLSLK 361



 Score = 43.9 bits (102), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 60/294 (20%)

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
           G +V G V  V  + V++ +   GY ++G IP+  L+  ++H      V++ G E + L+
Sbjct: 34  GDIVEGTVVKVDHDEVLLDI---GYKTEGVIPSRELS--IKHDVNPDEVVEVGDEIEALV 88

Query: 604 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
           +  +++   L+LS K +    A    +Q+  D        VV G V  +++ G  V    
Sbjct: 89  LQKEDKEGRLILSKKRAQYERAWGTIEQIKED------EGVVTGRVIEVVKGGLIVDI-- 140

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDA 715
            L GF P S     +  DL    YVGQ + + I++++     + LS +   +   S+  +
Sbjct: 141 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRS 198

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
            F+Q           LQ                 G V EG V    +FG  V       V
Sbjct: 199 DFLQ----------TLQK----------------GQVREGAVSSIVNFGAFVDL---GGV 229

Query: 776 YGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
            G +   +L+          VE G  ++  +LDV      V LSLK    D ++
Sbjct: 230 DGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLDVDMDRERVSLSLKATQEDPWQ 283


>gi|304406967|ref|ZP_07388621.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304343954|gb|EFM09794.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 407

 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 169/378 (44%), Gaps = 48/378 (12%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
            G  V G + K+++  A  T+S   K    I        +L        +G+ V   V+SI
Sbjct: 30   GDTVKGTIVKIEDNQA--TVSLGYKYDGVIPLRELSSVQLDNAATAVQVGQEVELKVVSI 87

Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
            + EK+ L L  R      + + +    DN + F    D+V   + K     GGLV  +G 
Sbjct: 88   DDEKEKLVLSKRAIDGEKAWEELQAKFDNSEAF----DVVIADVVK-----GGLVADVG- 137

Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
             + G +  + ++   V D             S Y +G+ +K KV EI R       V LS
Sbjct: 138  -VRGFIPASMVERHFVED------------FSDY-KGRSIKVKVKEIDRE---NNKVILS 180

Query: 1219 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
             +  L+     N   +             I  L P   ++G V+ +T  G FI +   +D
Sbjct: 181  AKEVLEADFEANKQKI-------------IASLEPGQELEGTVQRLTPFGAFIDIG-GID 226

Query: 1279 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1338
              V +S +S  +V  P+     G+ V  +VL V+P + ++ +++K +       +    +
Sbjct: 227  GLVHVSEISWQHVAHPKDAVSEGQSVRVKVLKVDPAAGKISLSMKAAQPGPWDSA----I 282

Query: 1339 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1398
            ++ + GDIV G ++R+  +G FI I    + GL H+S+++  HV     + + G++VK K
Sbjct: 283  NSFNTGDIVTGTVRRIVDFGAFIEI-APGVEGLVHISQIAHRHVATPHEVLKEGQEVKAK 341

Query: 1399 ILKVDKEKRRISLGMKSS 1416
            IL  +  ++R+SL +K +
Sbjct: 342  ILDFNPAQKRVSLSIKET 359



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           + ++PG  ++G V  +  FGA +   GG+  L  +  +S   +  P      G  +  +V
Sbjct: 198 ASLEPGQELEGTVQRLTPFGAFIDI-GGIDGLVHVSEISWQHVAHPKDAVSEGQSVRVKV 256

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   + +I+++ K        + ++S+   T  ++T G + +I   G F+    GV+G
Sbjct: 257 LKVDPAAGKISLSMKAAQPGPWDSAINSFN--TGDIVT-GTVRRIVDFGAFIEIAPGVEG 313

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               S++       P  +   GQ VK +I+   PA +R++LS 
Sbjct: 314 LVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVSLSI 356



 Score = 49.3 bits (116), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 141/364 (38%), Gaps = 56/364 (15%)

Query: 466 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 525
           G I KIE +   V       G  P  EL        ++   VGQ V+ +++S      ++
Sbjct: 35  GTIVKIEDNQATVSLGYKYDGVIPLRELSSVQLDNAATAVQVGQEVELKVVSIDDEKEKL 94

Query: 526 NLS-FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL- 583
            LS   +   +  E+   K  +  S   DVV  + V   ++A    +G IP   +  H  
Sbjct: 95  VLSKRAIDGEKAWEELQAKFDN--SEAFDVVIADVVKGGLVADVGVRGFIPASMVERHFV 152

Query: 584 -EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL-----INSAQQLPSDASHIHPN 637
            + +      IK      ++  +D E++ ++LSAK  L      N  + + S    + P 
Sbjct: 153 EDFSDYKGRSIKV-----KVKEIDRENNKVILSAKEVLEADFEANKQKIIAS----LEPG 203

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
             + G V  +   G F+  +G + G    S+      A        GQSVR  +L V+  
Sbjct: 204 QELEGTVQRLTPFGAFID-IGGIDGLVHVSEISWQHVAHPKDAVSEGQSVRVKVLKVDPA 262

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
            G+I+LS+K +     D++                           +  F  G ++ G V
Sbjct: 263 AGKISLSMKAAQPGPWDSA---------------------------INSFNTGDIVTGTV 295

Query: 758 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVD 810
               DFG  +  E    V G +   Q+A   V +       G  ++A ILD   A++ V 
Sbjct: 296 RRIVDFGAFI--EIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVS 353

Query: 811 LSLK 814
           LS+K
Sbjct: 354 LSIK 357



 Score = 48.5 bits (114), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 143/362 (39%), Gaps = 53/362 (14%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K G  VKG ++ ++   A V        + PL  +S  ++       +VG E+  +V+ 
Sbjct: 27  LKKGDTVKGTIVKIEDNQATVSLGYKYDGVIPLRELSSVQLDNAATAVQVGQEVELKVVS 86

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYA-----------EATDRLITHGWITKIEKHGCFVR 479
           +  +      K+ LV SK AI    A           EA D +I       + K G    
Sbjct: 87  IDDE------KEKLVLSKRAIDGEKAWEELQAKFDNSEAFDVVIAD-----VVKGGLVAD 135

Query: 480 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
              GV+GF P S +      E  S Y  G+ +K ++        R N   ++    V E 
Sbjct: 136 V--GVRGFIPASMVERH-FVEDFSDYK-GRSIKVKVKEI----DRENNKVILSAKEVLEA 187

Query: 540 DL----------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 589
           D           ++ G  + G V  +TP    + +   G   G +    ++   +H    
Sbjct: 188 DFEANKQKIIASLEPGQELEGTVQRLTPFGAFIDI---GGIDGLVHVSEIS--WQHVAHP 242

Query: 590 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCN 646
           K  +  G     ++L +D  +  + LS K     +AQ  P D++    +   +V G V  
Sbjct: 243 KDAVSEGQSVRVKVLKVDPAAGKISLSMK-----AAQPGPWDSAINSFNTGDIVTGTVRR 297

Query: 647 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           I++ G F+     + G    S+      A   +    GQ V++ ILD N    R++LS+K
Sbjct: 298 IVDFGAFIEIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVSLSIK 357

Query: 707 QS 708
           ++
Sbjct: 358 ET 359



 Score = 45.1 bits (105), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 32/176 (18%)

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
            G  + IG  + G VH +E+    V+ P         D +S   EGQ V+ KVL++     
Sbjct: 217  GAFIDIG-GIDGLVHVSEISWQHVAHPK--------DAVS---EGQSVRVKVLKVDPAAG 264

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
                + LS++++                  PG     I   +   IV G V+ +   G F
Sbjct: 265  ---KISLSMKAA-----------------QPGPWDSAINSFNTGDIVTGTVRRIVDFGAF 304

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
            I ++  ++  V +S ++  +V +P +    G+ V  ++L   P  KRV +++K ++
Sbjct: 305  IEIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVSLSIKETE 360


>gi|152990412|ref|YP_001356134.1| 30S ribosomal protein S1 [Nitratiruptor sp. SB155-2]
 gi|151422273|dbj|BAF69777.1| 30S ribosomal protein S1 [Nitratiruptor sp. SB155-2]
          Length = 558

 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 158/342 (46%), Gaps = 44/342 (12%)

Query: 1075 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1134
            P+    F+ +  IG+ +T  V+ I+ E   + +  + +   I  K  +I N      ++E
Sbjct: 147  PNSQSFFKNKPEIGRKITAKVIKIDPENDSIVISRKAYLQDIFKKREEIVN----QLLNE 202

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            G IV G I KI +   G+ V++ P + G VH+ E+           Y +G  +P   + E
Sbjct: 203  GTIVEGTIKKITNY--GMFVEVAPQVEGLVHYNEI----------SY-KGPVNPAKYFQE 249

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            G  V  K ++ ++  R      LS++++                  P    E   +L P 
Sbjct: 250  GDKVNVKAIDFNKEKRRLL---LSIKAT-----------------QPDPWEEIKGELEPG 289

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEP 1313
             ++   + N+   G F+ L   ++  + +S +S D   + P++    G+ +   V+ ++ 
Sbjct: 290  DVINVTISNIEPYGAFVDLGNDIEGLLHISEMSWDKRPKHPKEYVQEGQQLDVEVIEIDA 349

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
             ++++ V+LK    +   +     LSN   GD+V G++  +  +G F+ I   ++ GL H
Sbjct: 350  ENRKLRVSLKNLLPKPFEEF----LSNYKEGDVVEGEVTSLTDFGAFVRI--GSVEGLLH 403

Query: 1374 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
              ++S +     +  +  GEKV+VKI K+D++  +ISL  KS
Sbjct: 404  NQDISWEKGQKAKDAFNVGEKVEVKIAKIDRDNEKISLDRKS 445



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 113/491 (23%), Positives = 203/491 (41%), Gaps = 75/491 (15%)

Query: 331 KYKEGSCVRVRILGFR-------HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 383
           KY+ G  ++V + G R       H + LA   +KA      +  H D   G++++G +  
Sbjct: 74  KYQPGDTIKVMVSGHRNERPVISHKKALAKEKVKA-----FIEQHKDDFDGLILEGVIKG 128

Query: 384 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 441
            +  G IV+   GV+    LP+   F   KP    ++G ++  +V+ +  ++  I ++ K
Sbjct: 129 KNRGGYIVENDEGVQFF--LPNSQSFFKNKP----EIGRKITAKVIKIDPENDSIVISRK 182

Query: 442 KTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 496
             L      I     E  ++L     I  G I KI  +G FV     V+G    +E+   
Sbjct: 183 AYL----QDIFKKREEIVNQLLNEGTIVEGTIKKITNYGMFVEVAPQVEGLVHYNEISYK 238

Query: 497 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVT 556
               P+  +  G  V  + +      RR+ LS  +K T+    + +K G L  G V  VT
Sbjct: 239 GPVNPAKYFQEGDKVNVKAIDFNKEKRRLLLS--IKATQPDPWEEIK-GELEPGDVINVT 295

Query: 557 PNAVVVYVIAKGYSKGTIPTEHLADHL--EHATVMKSVIKPGYEFD-QLLVLDNESSNLL 613
            + +  Y              H+++    +     K  ++ G + D +++ +D E+  L 
Sbjct: 296 ISNIEPYGAFVDLGNDIEGLLHISEMSWDKRPKHPKEYVQEGQQLDVEVIEIDAENRKLR 355

Query: 614 LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV--D 671
           +S K  L    ++     S+     VV G V ++ + G FVR +G + G           
Sbjct: 356 VSLKNLLPKPFEEF---LSNYKEGDVVEGEVTSLTDFGAFVR-IGSVEGLLHNQDISWEK 411

Query: 672 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 731
           GQ+A     + VG+ V   I  ++ +  +I+L  ++S   S    F +EH          
Sbjct: 412 GQKA--KDAFNVGEKVEVKIAKIDRDNEKISLD-RKSLLESPLEKFAKEH---------- 458

Query: 732 QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH---HQLAGAT 788
                            +G +++G V +  +FGV V+ +E+ D  G I +   + L    
Sbjct: 459 ----------------KVGDIVKGTVKDIKEFGVFVALDENVD--GLIRNEDLYPLKKEE 500

Query: 789 VESGSVIQAAI 799
           ++SG  I+A I
Sbjct: 501 IQSGDEIEAVI 511



 Score = 60.8 bits (146), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 93/174 (53%), Gaps = 11/174 (6%)

Query: 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
            +E+ +D    +I++G +K   ++G +I+ + +   +  L N    +   PE    IG+ +
Sbjct: 110  IEQHKDDFDGLILEGVIKG-KNRGGYIVENDE-GVQFFLPNSQSFFKNKPE----IGRKI 163

Query: 1305 AGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
              +V+ ++P +  + ++ K    D     +  +N L  L+ G IV G IK++ +YG+F+ 
Sbjct: 164  TAKVIKIDPENDSIVISRKAYLQDIFKKREEIVNQL--LNEGTIVEGTIKKITNYGMFVE 221

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +    + GL H +E+S     N    ++ G+KV VK +  +KEKRR+ L +K++
Sbjct: 222  VA-PQVEGLVHYNEISYKGPVNPAKYFQEGDKVNVKAIDFNKEKRRLLLSIKAT 274



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/402 (20%), Positives = 175/402 (43%), Gaps = 30/402 (7%)

Query: 227 FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIY 286
           F L N+   + +KN     +K+ A+++ +DP + ++ ++   YL         + V  + 
Sbjct: 144 FFLPNS--QSFFKNKPEIGRKITAKVIKIDPENDSIVISRKAYLQDIFKKREEI-VNQLL 200

Query: 287 DQSKVV----RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 342
           ++  +V    +     G+ +++          V  ++++ +      K ++EG  V V+ 
Sbjct: 201 NEGTIVEGTIKKITNYGMFVEVAP---QVEGLVHYNEISYKGPVNPAKYFQEGDKVNVKA 257

Query: 343 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 402
           + F   +      +KA+  +       +++PG V+   +  ++ +GA V     ++ L  
Sbjct: 258 IDFNKEKRRLLLSIKATQPDPWEEIKGELEPGDVINVTISNIEPYGAFVDLGNDIEGLLH 317

Query: 403 LPHMSEFEIVKPGKKF-KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEAT 459
           +  MS  +  K  K++ + G +L   V+ +  +++++ V+ K  L K     LS+Y E  
Sbjct: 318 ISEMSWDKRPKHPKEYVQEGQQLDVEVIEIDAENRKLRVSLKNLLPKPFEEFLSNYKEGD 377

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
              +  G +T +   G FVR    V+G     ++  + G +    ++VG+ V+ +I    
Sbjct: 378 ---VVEGEVTSLTDFGAFVRI-GSVEGLLHNQDISWEKGQKAKDAFNVGEKVEVKIAKID 433

Query: 520 PASRRINL---SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
             + +I+L   S +  P      +  K+G +V G V  +      V+V       G I  
Sbjct: 434 RDNEKISLDRKSLLESPLEKFAKEH-KVGDIVKGTVKDIKEFG--VFVALDENVDGLIRN 490

Query: 577 EHLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAK 617
           E L        + K  I+ G E + ++  LD +++ L LS +
Sbjct: 491 EDL------YPLKKEEIQSGDEIEAVISHLDTKNNRLRLSVR 526



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 97/456 (21%), Positives = 199/456 (43%), Gaps = 76/456 (16%)

Query: 987  KIGQTVTARIIAKSNKPDM----KKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1042
            +IG+ +TA++I    + D     +K++L ++  K       EI ++LL E      G  V
Sbjct: 158  EIGRKITAKVIKIDPENDSIVISRKAYLQDIFKKRE-----EIVNQLLNE------GTIV 206

Query: 1043 TGYVYKVDNEWALLTISRHLKAQLFILDSAYE-PSELQEFQRRFHIGKAVTGHVLSINKE 1101
             G + K+ N    + ++  ++  +   + +Y+ P    ++   F  G  V    +  NKE
Sbjct: 207  EGTIKKITNYGMFVEVAPQVEGLVHYNEISYKGPVNPAKY---FQEGDKVNVKAIDFNKE 263

Query: 1102 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1161
            K+ L L ++  Q    D   +I  +     +  GD++   IS I     G  V +G  + 
Sbjct: 264  KRRLLLSIKATQ---PDPWEEIKGE-----LEPGDVINVTISNIEPY--GAFVDLGNDIE 313

Query: 1162 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1221
            G +H +E+           +D+    P     EGQ +  +V+EI    R        LR 
Sbjct: 314  GLLHISEM----------SWDKRPKHPKEYVQEGQQLDVEVIEIDAENR-------KLRV 356

Query: 1222 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1281
            SL  +              P    E + +     +V+G V ++T  G F+ +      + 
Sbjct: 357  SLKNL-------------LPKPFEEFLSNYKEGDVVEGEVTSLTDFGAFVRIGS---VEG 400

Query: 1282 LLSNLSDGYV--ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1339
            LL N    +   +  +  F +G+ V  ++  ++  ++++ +     D ++  +S +   +
Sbjct: 401  LLHNQDISWEKGQKAKDAFNVGEKVEVKIAKIDRDNEKISL-----DRKSLLESPLEKFA 455

Query: 1340 NLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1398
              H VGDIV G +K ++ +G+F+ + + N+ GL    +L     + I++    G++++  
Sbjct: 456  KEHKVGDIVKGTVKDIKEFGVFVAL-DENVDGLIRNEDLYPLKKEEIQS----GDEIEAV 510

Query: 1399 ILKVDKEKRRISLGMKS-SYFKNDADNLQMSSEEES 1433
            I  +D +  R+ L ++     K   D  +++S+E++
Sbjct: 511  ISHLDTKNNRLRLSVRRLQKMKEKEDLKKINSDEKT 546


>gi|297584436|ref|YP_003700216.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens
            MLS10]
 gi|297142893|gb|ADH99650.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10]
          Length = 388

 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 183/382 (47%), Gaps = 54/382 (14%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            +S+G    G V KV+++ A + +        + +D     SEL       H+ KA  G V
Sbjct: 15   LSVGDVTKGTVSKVEDKQAYVNVG-------YKMDGVVPISELA----SLHVEKA--GDV 61

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTV--DISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1153
            ++  +E +   + L   +  +S + V  + + +NM   +  G++    ++ ++ G  GLV
Sbjct: 62   INEGEEYEFKVIKLTEDELVLSRRAVAAEKTWENMAEKLESGEVFEAEVADVVKG--GLV 119

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V +G  + G +  + ++   V D             S Y +G+ ++ KV+E+ R      
Sbjct: 120  VDVG--VRGFIPASLVERFYVED------------FSEY-KGKTLRLKVVELDRERNKLI 164

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
               LS R+ LD              +   +  E +  +S   +V G V+ +TS G F+ +
Sbjct: 165  ---LSQRAVLDE-------------EALNQKKETLHSISAGEVVSGTVQRITSFGVFVDI 208

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  V +S LS  ++E+P +    G  V  +VLSV+P ++R+ +++K +        
Sbjct: 209  G-GVDGLVHISQLSHEHIETPSEVVSEGDEVKVKVLSVDPDNERISLSIKETMPGPWEGV 267

Query: 1334 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
            E        VGD+V G++KR+ S+G F+ +    + GL H+S+++  H+     + + GE
Sbjct: 268  E----EQFSVGDVVTGKVKRLVSFGAFVEVAK-GVEGLVHISQIANRHIGTPGEVLKEGE 322

Query: 1394 KVKVKILKVDKEKRRISLGMKS 1415
            +V  KIL ++ + +RISL +++
Sbjct: 323  EVSAKILDINLDDKRISLSIRA 344



 Score = 63.2 bits (152), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            L ++  G++V G ++R+ S+G+F+ I   +  GL H+S+LS +H++    +   G++VKV
Sbjct: 183  LHSISAGEVVSGTVQRITSFGVFVDIGGVD--GLVHISQLSHEHIETPSEVVSEGDEVKV 240

Query: 1398 KILKVDKEKRRISLGMKSS 1416
            K+L VD +  RISL +K +
Sbjct: 241  KVLSVDPDNERISLSIKET 259



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 7/164 (4%)

Query: 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           HS +  G VV G V  + SFG  V   GGV  L  +  +S   I  P +    G E+  +
Sbjct: 184 HS-ISAGEVVSGTVQRITSFGVFVDI-GGVDGLVHISQLSHEHIETPSEVVSEGDEVKVK 241

Query: 428 VLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
           VL V   ++RI+++ K+T+      +   ++      +  G + ++   G FV    GV+
Sbjct: 242 VLSVDPDNERISLSIKETMPGPWEGVEEQFSVGD---VVTGKVKRLVSFGAFVEVAKGVE 298

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           G    S++       P  +   G+ V  +I+      +RI+LS 
Sbjct: 299 GLVHISQIANRHIGTPGEVLKEGEEVSAKILDINLDDKRISLSI 342



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 134/294 (45%), Gaps = 57/294 (19%)

Query: 1075 PSELQEFQRRFHI-------GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
            P+ L E   RF++       GK +   V+ +++E+  L L  R   D   ++ ++   + 
Sbjct: 129  PASLVE---RFYVEDFSEYKGKTLRLKVVELDRERNKLILSQRAVLD---EEALNQKKET 182

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
            + + I  G++V G + +I S   G+ V IG  + G VH ++L +  +  P     EG   
Sbjct: 183  LHS-ISAGEVVSGTVQRITSF--GVFVDIGG-VDGLVHISQLSHEHIETPSEVVSEG--- 235

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
                 DE   VK KVL +         + LS++ ++ G               P + +E 
Sbjct: 236  -----DE---VKVKVLSVDPD---NERISLSIKETMPG---------------PWEGVE- 268

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
             E  S   +V G VK + S G F+ +++ ++  V +S +++ ++ +P +    G+ V+ +
Sbjct: 269  -EQFSVGDVVTGKVKRLVSFGAFVEVAKGVEGLVHISQIANRHIGTPGEVLKEGEEVSAK 327

Query: 1308 VLSVEPLSKRVEVTLKTSDSRT------ASQSEI---NNLSNLHVGDIVIGQIK 1352
            +L +    KR+ ++++  +  T      A + E       S  ++GD++  Q+K
Sbjct: 328  ILDINLDDKRISLSIRALEEETQEKEASAQKQEFAKDEEQSGFNLGDVIGDQLK 381



 Score = 47.4 bits (111), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 158/393 (40%), Gaps = 59/393 (15%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 518
           +T G ++K+E    +V     + G  P SEL      +   + + G+  + +++      
Sbjct: 20  VTKGTVSKVEDKQAYVNVGYKMDGVVPISELASLHVEKAGDVINEGEEYEFKVIKLTEDE 79

Query: 519 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE- 577
           +  SRR   +   + T  +  + ++ G +    V  V    +VV V  +G+   ++    
Sbjct: 80  LVLSRR---AVAAEKTWENMAEKLESGEVFEAEVADVVKGGLVVDVGVRGFIPASLVERF 136

Query: 578 HLADHLEH--ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-I 634
           ++ D  E+   T+   V++          LD E + L+LS +  L   A     +  H I
Sbjct: 137 YVEDFSEYKGKTLRLKVVE----------LDRERNKLILSQRAVLDEEALNQKKETLHSI 186

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
               VV G V  I   G FV  +G + G    S+         S+    G  V+  +L V
Sbjct: 187 SAGEVVSGTVQRITSFGVFVD-IGGVDGLVHISQLSHEHIETPSEVVSEGDEVKVKVLSV 245

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 754
           + +  RI+LS+K++     +         +EE+                   F +G V+ 
Sbjct: 246 DPDNERISLSIKETMPGPWEG--------VEEQ-------------------FSVGDVVT 278

Query: 755 GKVHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAER 807
           GKV     FG  V  E    V G +   Q+A       G  ++ G  + A ILD+   ++
Sbjct: 279 GKVKRLVSFGAFV--EVAKGVEGLVHISQIANRHIGTPGEVLKEGEEVSAKILDINLDDK 336

Query: 808 LVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 840
            + LS++ +  +  +E  ++ Q Q+  +  E S
Sbjct: 337 RISLSIRALE-EETQEKEASAQKQEFAKDEEQS 368



 Score = 40.4 bits (93), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 298 LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGIL 356
            G+ +DI          V IS ++ E +    +   EG  V+V++L      E ++  I 
Sbjct: 202 FGVFVDIGGVD----GLVHISQLSHEHIETPSEVVSEGDEVKVKVLSVDPDNERISLSIK 257

Query: 357 KA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
           +     +EG+         G VV GKV  + SFGA V+   GV+ L  +  ++   I  P
Sbjct: 258 ETMPGPWEGV---EEQFSVGDVVTGKVKRLVSFGAFVEVAKGVEGLVHISQIANRHIGTP 314

Query: 415 GKKFKVGAELVFRVLGVK--SKRITVT 439
           G+  K G E+  ++L +    KRI+++
Sbjct: 315 GEVLKEGEEVSAKILDINLDDKRISLS 341


>gi|309789714|ref|ZP_07684294.1| RNA binding S1 domain protein [Oscillochloris trichoides DG-6]
 gi|308228200|gb|EFO81848.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
          Length = 488

 Score = 90.9 bits (224), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 10/188 (5%)

Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
            T V   G    +++DL   M ++G V ++   G F+ L    D  V +S +SD  +++P 
Sbjct: 88   TPVAEEGGRPRRLKDLQAGMELEGRVTSIALYGIFVDLGVGRDGLVHISEMSDTRIDTPS 147

Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS---------EINNLSNLHVGDI 1346
                IG  V  RV SV+P ++R+ +T+++ +     ++         + + LS+L VGD+
Sbjct: 148  DLVQIGDTVTVRVKSVDPDARRISLTMRSQERSEGGRNRNRPKRAEVDRDRLSSLKVGDV 207

Query: 1347 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1406
            V G+I     +G F  I      GL HVSEL+E  V+  E   + G++   K+L++D + 
Sbjct: 208  VEGKITGFAPFGAFADI-GVGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKVLEIDPDG 266

Query: 1407 RRISLGMK 1414
             RISL ++
Sbjct: 267  TRISLSLR 274



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 114/262 (43%), Gaps = 34/262 (12%)

Query: 465 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            G +T I  +G FV    G  G    SE+       PS +  +G  V  R+ S  P +RR
Sbjct: 110 EGRVTSIALYGIFVDLGVGRDGLVHISEMSDTRIDTPSDLVQIGDTVTVRVKSVDPDARR 169

Query: 525 INLSFMM-----------KPTR--VSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGY 569
           I+L+              +P R  V  D L  +K+G +V G +    P      +   G 
Sbjct: 170 ISLTMRSQERSEGGRNRNRPKRAEVDRDRLSSLKVGDVVEGKITGFAPFGAFADI---GV 226

Query: 570 SK-GTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL 627
            K G I    LA+        +  +K G +F+ ++L +D + + + LS + ++ +   Q 
Sbjct: 227 GKDGLIHVSELAEG--RVEKPEDAVKVGDQFNFKVLEIDPDGTRISLSLRRAMRSQRMQ- 283

Query: 628 PSDASHIHPNSVVHGYVCNIIETGCFVRF-LGR--LTGFAPRSKAVDGQRADLSKTYYVG 684
                 + P  ++ G V  +   G FV   +GR  L   +  S +  G+  D+ K   VG
Sbjct: 284 -----GLEPGQILEGTVSGLAPFGAFVDIGVGRDGLVHISALSSSRVGKVEDVVK---VG 335

Query: 685 QSVRSNILDVNSETGRITLSLK 706
             V   +L+V+ ++ RI+L+++
Sbjct: 336 DKVTVKVLEVDQQSKRISLTMR 357



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 108/262 (41%), Gaps = 49/262 (18%)

Query: 1075 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ--DGISD----KTVDISNDNM 1128
            PS+L        IG  VT  V S++ + + + L +R  +  +G  +    K  ++  D +
Sbjct: 146  PSDL------VQIGDTVTVRVKSVDPDARRISLTMRSQERSEGGRNRNRPKRAEVDRDRL 199

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
             + +  GD+V G+I+       G    IG    G +H +EL    V  P      G    
Sbjct: 200  SS-LKVGDVVEGKITGFAPF--GAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGD--- 253

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                   QF   KVLEI     GT  + LSLR ++                      +++
Sbjct: 254  -------QF-NFKVLEIDPD--GT-RISLSLRRAM--------------------RSQRM 282

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            + L P  I++G V  +   G F+ +    D  V +S LS   V   E    +G  V  +V
Sbjct: 283  QGLEPGQILEGTVSGLAPFGAFVDIGVGRDGLVHISALSSSRVGKVEDVVKVGDKVTVKV 342

Query: 1309 LSVEPLSKRVEVTLKTSDSRTA 1330
            L V+  SKR+ +T++  DS  A
Sbjct: 343  LEVDQQSKRISLTMRLDDSEPA 364



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 113/272 (41%), Gaps = 41/272 (15%)

Query: 194 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ-HKKVNARI 252
           L  GM +  RV SI   G+ +       G V I  + +T    +  +D  Q    V  R+
Sbjct: 103 LQAGMELEGRVTSIALYGIFVDLGVGRDGLVHISEMSDT--RIDTPSDLVQIGDTVTVRV 160

Query: 253 LFVDPTSRAVGLTLNPYLL----HNRAPP----------SHVKVGDIYDQSKVVRVDRGL 298
             VDP +R + LT+          NR  P          S +KVGD+  + K+       
Sbjct: 161 KSVDPDARRISLTMRSQERSEGGRNRNRPKRAEVDRDRLSSLKVGDVV-EGKITGF-APF 218

Query: 299 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI--- 355
           G   DI    V     + +S++AE  V K E   K G     ++L    ++   T I   
Sbjct: 219 GAFADIG---VGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKVL---EIDPDGTRISLS 272

Query: 356 ----LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 411
               +++   +GL       +PG +++G V  +  FGA V    G   L  +  +S   +
Sbjct: 273 LRRAMRSQRMQGL-------EPGQILEGTVSGLAPFGAFVDIGVGRDGLVHISALSSSRV 325

Query: 412 VKPGKKFKVGAELVFRVLGV--KSKRITVTHK 441
            K     KVG ++  +VL V  +SKRI++T +
Sbjct: 326 GKVEDVVKVGDKVTVKVLEVDQQSKRISLTMR 357



 Score = 47.8 bits (112), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G VV+GK+     FGA      G   L  +  ++E  + KP    KVG +  F+V
Sbjct: 200 SSLKVGDVVEGKITGFAPFGAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKV 259

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L +     RI+++ ++ +   ++  L          I  G ++ +   G FV    G  G
Sbjct: 260 LEIDPDGTRISLSLRRAMRSQRMQGLEPGQ------ILEGTVSGLAPFGAFVDIGVGRDG 313

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531
               S L      +   +  VG  V  +++     S+RI+L+  +
Sbjct: 314 LVHISALSSSRVGKVEDVVKVGDKVTVKVLEVDQQSKRISLTMRL 358



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 27/214 (12%)

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           D++ GM ++G+V ++  +G  V    G   L  +  MS+  I  P    ++G  +  RV 
Sbjct: 102 DLQAGMELEGRVTSIALYGIFVDLGVGRDGLVHISEMSDTRIDTPSDLVQIGDTVTVRVK 161

Query: 430 GV--KSKRITVTHK--------KTLVKSKLAILSSYAEATDRL-------ITHGWITKIE 472
            V   ++RI++T +        +   + K A +       DRL       +  G IT   
Sbjct: 162 SVDPDARRISLTMRSQERSEGGRNRNRPKRAEVDR-----DRLSSLKVGDVVEGKITGFA 216

Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--M 530
             G F     G  G    SEL      +P     VG     +++   P   RI+LS    
Sbjct: 217 PFGAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKVLEIDPDGTRISLSLRRA 276

Query: 531 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 564
           M+  R+     ++ G ++ G V  + P    V +
Sbjct: 277 MRSQRMQG---LEPGQILEGTVSGLAPFGAFVDI 307


>gi|406575491|ref|ZP_11051195.1| 30S ribosomal protein S1 [Janibacter hoylei PVAS-1]
 gi|404555203|gb|EKA60701.1| 30S ribosomal protein S1 [Janibacter hoylei PVAS-1]
          Length = 496

 Score = 90.9 bits (224), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 191/417 (45%), Gaps = 66/417 (15%)

Query: 1020 LTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS+  L    D +I     G  V G++ KVD +  LL I       + ++   +
Sbjct: 13   IAVNDIGSEEDLLAAIDATIKDFNDGDIVEGHIVKVDRDEVLLDIGYKTEGVIPSRELSI 72

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +PSE+        +G +V   VL   KE K  RL+L   +        + +   ++
Sbjct: 73   KHDVDPSEI------VAVGDSVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 119

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 120  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 170

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+   S   +               ++
Sbjct: 171  --------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF-------------LK 206

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            +L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 207  ELQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGDEVTVEVL 265

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +    + +  H +G +V G++ ++  +G F+ +E+  +
Sbjct: 266  DVDMDRERVSLSLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFVRVED-GI 319

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
             GL H+SEL+E HV+  E +   G+++ VK++ +D E+RRISL +K +    D  NL
Sbjct: 320  EGLVHISELAERHVELPEQVVNVGQEIFVKVIDIDLERRRISLSLKQA--NEDGANL 374



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 153/355 (43%), Gaps = 31/355 (8%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           T  D   G +V+G ++ VD    ++      + + P   +S    V P +   VG  +  
Sbjct: 31  TIKDFNDGDIVEGHIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEIVAVGDSVEA 90

Query: 427 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
            VL  + K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G+
Sbjct: 91  LVLQKEDKEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GL 146

Query: 485 QGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRV 536
           +GF P S  E+      +P    +VG+ ++ +I+      +++  SRR  L       R 
Sbjct: 147 RGFLPASLVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 202

Query: 537 SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 595
           +    ++ G + SGVV  +      V +   G   G +    L+  H++H +    V++ 
Sbjct: 203 TFLKELQKGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEV 256

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCF 653
           G E   ++L +D +   + LS K +  +  Q      +  H    VV G V  ++  G F
Sbjct: 257 GDEVTVEVLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAF 312

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           VR    + G    S+  +       +   VGQ +   ++D++ E  RI+LSLKQ+
Sbjct: 313 VRVEDGIEGLVHISELAERHVELPEQVVNVGQEIFVKVIDIDLERRRISLSLKQA 367



 Score = 41.6 bits (96), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 137/309 (44%), Gaps = 54/309 (17%)

Query: 1040 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1090
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 112  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 170

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1147
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G +S I++
Sbjct: 171  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLKELQKGQVRSGVVSSIVN 223

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
               G  V +G  + G VH +EL    +  P    + G        DE   V  +VL++  
Sbjct: 224  F--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG--------DE---VTVEVLDVDM 269

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LSL+++ +                P +H  +   +    +V G V  +   
Sbjct: 270  DRE---RVSLSLKATQE---------------DPWQHFARTHAI--GQVVPGKVTKLVPF 309

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   ++  V +S L++ +VE PE+   +G+ +  +V+ ++   +R+ ++LK ++ 
Sbjct: 310  GAFVRVEDGIEGLVHISELAERHVELPEQVVNVGQEIFVKVIDIDLERRRISLSLKQANE 369

Query: 1328 RTASQSEIN 1336
              A+ +E +
Sbjct: 370  DGANLTEFD 378


>gi|385653141|ref|ZP_10047694.1| 30S ribosomal protein S1 [Leucobacter chromiiresistens JG 31]
          Length = 481

 Score = 90.9 bits (224), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 177/385 (45%), Gaps = 62/385 (16%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  + G V K+D +  LL +       + ++   +    +P E+ E      +G +V   
Sbjct: 36   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPGEVVE------VGDSVEAL 89

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1153
            VL   KE K  RL+L   +        D+        I E + +V G + +++ G  GL+
Sbjct: 90   VL--QKEDKEGRLILSKKRAQYERAWGDVEK------IKENEGVVTGTVIEVVKG--GLI 139

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V IG   +      EL+ +    P  G               Q ++ K+LE+ +      
Sbjct: 140  VDIGLRGFLPASLIELRRVRDLTPYLG---------------QEIEAKILELDKNRN--- 181

Query: 1214 HVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
            +V LS R+ L+   S+T SS L+              +L P  + +G + ++ + G F+ 
Sbjct: 182  NVVLSRRALLEETQSATRSSFLA--------------ELKPGQVRKGVISSIVNFGAFVD 227

Query: 1273 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1332
            L   +D  V +S LS  ++E       +G+ V   VLSVE   +RV ++LK +      +
Sbjct: 228  LG-GVDGLVHVSELSWKHIEHASDVVEVGQEVTVEVLSVELDRERVSLSLKAT-----QE 281

Query: 1333 SEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1391
                  +  H +G I  G + ++  +G F+ + +  + GL H+SELS  HV+  E + +A
Sbjct: 282  DPWQVFARTHAIGQIAPGVVTKLVPFGAFVRVAD-GIEGLVHISELSGQHVELAEQVVQA 340

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSS 1416
            G++V VKI+ +D E+RRISL +K +
Sbjct: 341  GQEVFVKIIDIDLERRRISLSLKQA 365



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           +++KPG V KG + ++ +FGA V   GGV  L  +  +S   I       +VG E+   V
Sbjct: 204 AELKPGQVRKGVISSIVNFGAFVDL-GGVDGLVHVSELSWKHIEHASDVVEVGQEVTVEV 262

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V+   +R++++ K T          ++A      I  G +TK+   G FVR  +G++G
Sbjct: 263 LSVELDRERVSLSLKATQEDPWQVFARTHAIGQ---IAPGVVTKLVPFGAFVRVADGIEG 319

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL          +   GQ V  +I+      RRI+LS 
Sbjct: 320 LVHISELSGQHVELAEQVVQAGQEVFVKIIDIDLERRRISLSL 362



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 153/352 (43%), Gaps = 39/352 (11%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +++G V+ +D    ++      + + P   +S    V PG+  +VG  +   VL  + 
Sbjct: 36  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPGEVVEVGDSVEALVLQKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  +  +  G + ++ K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDVEKIKE--NEGVVTGTVIEVVKGGLIVDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             EL       P    ++GQ ++ +I+      +++  SRR  L      TR S    +K
Sbjct: 152 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEETQSATRSSFLAELK 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GV+  +      V +   G   G +    L+  H+EHA+    V++ G E    
Sbjct: 208 PGQVRKGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---DVVEVGQEVTVE 261

Query: 603 LV---LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFL 657
           ++   LD E  +L L A        Q+ P    +  H    +  G V  ++  G FVR  
Sbjct: 262 VLSVELDRERVSLSLKA-------TQEDPWQVFARTHAIGQIAPGVVTKLVPFGAFVRVA 314

Query: 658 GRLTGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 708
             + G    S+ + GQ  +L+ +    GQ V   I+D++ E  RI+LSLKQ+
Sbjct: 315 DGIEGLVHISE-LSGQHVELAEQVVQAGQEVFVKIIDIDLERRRISLSLKQA 365



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 150/371 (40%), Gaps = 38/371 (10%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI++    +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVESTLKFFNDGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPGEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG---SLVSGVVDVVTPNAVVVYVIA 566
            V+  ++       R+ LS        +  D+ K+     +V+G V  V    ++V +  
Sbjct: 85  SVEALVLQKEDKEGRLILSKKRAQYERAWGDVEKIKENEGVVTGTVIEVVKGGLIVDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+    +P    A  +E   V       G E + ++L LD   +N++LS + +L+   Q
Sbjct: 145 RGF----LP----ASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLS-RRALLEETQ 195

Query: 626 QLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 683
                +  + + P  V  G + +I+  G FV  LG + G    S+         S    V
Sbjct: 196 SATRSSFLAELKPGQVRKGVISSIVNFGAFVD-LGGVDGLVHVSELSWKHIEHASDVVEV 254

Query: 684 GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 743
           GQ V   +L V  +  R++LSLK +        F + H + +    ++      G+ ++ 
Sbjct: 255 GQEVTVEVLSVELDRERVSLSLKATQEDPWQV-FARTHAIGQIAPGVVTKLVPFGAFVRV 313

Query: 744 VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 803
            +G      IEG VH S   G                H +LA   V++G  +   I+D+ 
Sbjct: 314 ADG------IEGLVHISELSG---------------QHVELAEQVVQAGQEVFVKIIDID 352

Query: 804 KAERLVDLSLK 814
              R + LSLK
Sbjct: 353 LERRRISLSLK 363


>gi|451944076|ref|YP_007464712.1| 30S ribosomal protein S1 [Corynebacterium halotolerans YIM 70093 =
            DSM 44683]
 gi|451903463|gb|AGF72350.1| 30S ribosomal protein S1 [Corynebacterium halotolerans YIM 70093 =
            DSM 44683]
          Length = 486

 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 184/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEEFLAAVDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +  N++
Sbjct: 69   KHDVDPDEVVE------VGDEIDALVLT--KEDKEGRLILSKKR-----AQYERAWGNIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                  + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  QLQANDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKHRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL++ HVD  + I   GE V VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVDVPDQIVTVGEDVMVKVIDIDLERRRISLSLKQA 363



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVDVPDQIVTVGEDVMVKVIDIDLERRRISLSL 360



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP-- 489
           K  R+ ++ K+   +     +    +A D  +T G + ++ K G  +    G++GF P  
Sbjct: 94  KEGRLILSKKRAQYERAWGNIEQL-QANDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 490 ----RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
               R    LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVDVPDQIVTVGEDVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EG+
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPEANEWLEGY 405


>gi|386773662|ref|ZP_10096040.1| 30S ribosomal protein S1 [Brachybacterium paraconglomeratum LC44]
          Length = 494

 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 190/409 (46%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIG-SKLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IG +  L    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    IAINDIGDADELMAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P++         +G  +   VL   KE K  RL+L   +        + +  +++
Sbjct: 69   KHDVDPAD------EVEVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGSIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                +  +V GR+ +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 116  QIKEDEGVVTGRVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   SD              ++
Sbjct: 165  ------QEIEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSDF-------------LQ 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 203  TLQKGQVREGAVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVKVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
             V+   +RV ++LK      A+Q +   L +  H +G++V G++ ++  +G F+ +E+  
Sbjct: 262  DVDMDRERVSLSLK------ATQEDPWQLFARTHAIGEVVPGKVTKLVPFGAFVRVED-G 314

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL++ HVD  E +    + V VK++ +D E+RRISL +K +
Sbjct: 315  IEGLVHISELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQA 363



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 162/392 (41%), Gaps = 44/392 (11%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P  + +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPADEVEVGDEIEALVLQKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGSIEQIKE--DEGVVTGRVIEVVKGGLIVDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSDFLQTLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  G V  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 206 KGQVREGAVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVKVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 260 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHAIGEVVPGKVTKLVPFGAFVRVEDGI 315

Query: 661 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSC----CSSTDA 715
            G    S+    +  DL  +   V Q V   ++D++ E  RI+LSLKQ+         D 
Sbjct: 316 EGLVHISELAQ-RHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQANEGVDPEGDDT 374

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
           +F    +       M      NG E K+ EGF
Sbjct: 375 TFDPALY------GMAAEYDANG-EYKYPEGF 399



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 2/159 (1%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   VL 
Sbjct: 204 LQKGQVREGAVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLD 262

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           V   R  V+      +     L +   A   ++  G +TK+   G FVR  +G++G    
Sbjct: 263 VDMDRERVSLSLKATQEDPWQLFARTHAIGEVVP-GKVTKLVPFGAFVRVEDGIEGLVHI 321

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           SEL       P  +  V Q V  +++      RRI+LS 
Sbjct: 322 SELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSL 360



 Score = 47.4 bits (111), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 146/380 (38%), Gaps = 56/380 (14%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI ++     D  I  G + K++     +      +G  P  EL +    +P+    VG 
Sbjct: 23  AIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPADEVEVGD 82

Query: 510 VVKCRIMSSIPASRRINLSFMMKP--------TRVSEDDLVKLGSLVSGVVDVVTPNAVV 561
            ++  ++       R+ LS              ++ ED+      +V+G V  V    ++
Sbjct: 83  EIEALVLQKEDKEGRLILSKKRAQYERAWGSIEQIKEDE-----GVVTGRVIEVVKGGLI 137

Query: 562 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 620
           V +  +G+   ++        +E   V       G E + +++ LD   +N++LS +  L
Sbjct: 138 VDIGLRGFLPASL--------VEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAYL 189

Query: 621 INSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 679
             +   + SD    +    V  G V +I+  G FV  LG + G    S+         S+
Sbjct: 190 EETQSAVRSDFLQTLQKGQVREGAVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSE 248

Query: 680 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 739
              VGQ V+  +LDV+ +  R++LSLK +                +E    L +  H   
Sbjct: 249 VVEVGQKVKVEVLDVDMDRERVSLSLKAT----------------QEDPWQLFARTH--- 289

Query: 740 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSV 794
                    IG V+ GKV +   FG  V  E+  +    I+     H  L    V     
Sbjct: 290 --------AIGEVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVTVDQD 341

Query: 795 IQAAILDVAKAERLVDLSLK 814
           +   ++D+    R + LSLK
Sbjct: 342 VFVKVIDIDLERRRISLSLK 361



 Score = 42.0 bits (97), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 119/294 (40%), Gaps = 60/294 (20%)

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
           G +V G V  V  + V++ +   GY ++G IP+  L+  ++H       ++ G E + L+
Sbjct: 34  GDIVEGTVVKVDHDEVLLDI---GYKTEGVIPSRELS--IKHDVDPADEVEVGDEIEALV 88

Query: 604 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
           +  +++   L+LS K +    A    +Q+  D        VV G V  +++ G  V    
Sbjct: 89  LQKEDKEGRLILSKKRAQYERAWGSIEQIKED------EGVVTGRVIEVVKGGLIVDI-- 140

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDA 715
            L GF P S     +  DL    YVGQ + + I++++     + LS +   +   S+  +
Sbjct: 141 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRS 198

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
            F+Q           LQ                 G V EG V    +FG  V       V
Sbjct: 199 DFLQ----------TLQK----------------GQVREGAVSSIVNFGAFVDL---GGV 229

Query: 776 YGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
            G +   +L+          VE G  ++  +LDV      V LSLK    D ++
Sbjct: 230 DGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLDVDMDRERVSLSLKATQEDPWQ 283


>gi|354613005|ref|ZP_09030941.1| RNA binding S1 domain protein [Saccharomonospora paurometabolica YIM
            90007]
 gi|353222660|gb|EHB86961.1| RNA binding S1 domain protein [Saccharomonospora paurometabolica YIM
            90007]
          Length = 507

 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 193/423 (45%), Gaps = 66/423 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S +   + V++IGS+  F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 12   SEQAKQVAVNDIGSEDDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 71

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G AV   VL   KE K  RL+L   +        + 
Sbjct: 72   SRELSIKHDVDPAEV------VAVGDAVEALVL--QKEDKEGRLILSKKR-----AQYER 118

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++      + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 119  AWGTIEELKERDEPVSGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE- 175

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 176  --------------LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF--------- 209

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L+   + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ 
Sbjct: 210  ----LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE 264

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VLSVE   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 265  VTVEVLSVEMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 319

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY--FKN 1420
            +E   + GL H+SEL+E HV+  E + + G +V VK++ +D E+RRISL +K +   F  
Sbjct: 320  VEE-GIEGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGFTP 378

Query: 1421 DAD 1423
            DA+
Sbjct: 379  DAE 381



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 144/366 (39%), Gaps = 46/366 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 41  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQK 100

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    VSG V  V    +++ +  +G+   ++ 
Sbjct: 101 EDKEGRLILSKKRAQYERAWGTIEELKERDEPVSGTVIEVVKGGLILDIGLRGFLPASL- 159

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 160 -------VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 212

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L 
Sbjct: 213 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLS 271

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V  +  R++LSLK +        F + H                           IG ++
Sbjct: 272 VEMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 304

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++    V+ G  +   ++D+    R 
Sbjct: 305 PGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRR 364

Query: 809 VDLSLK 814
           + LSLK
Sbjct: 365 ISLSLK 370



 Score = 47.4 bits (111), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 151/358 (42%), Gaps = 32/358 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKED 102

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKERDEPV--SGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L ++ +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLSVEMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 717
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T DA F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGFTPDAEF 382


>gi|295395316|ref|ZP_06805520.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971867|gb|EFG47738.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030]
          Length = 488

 Score = 90.5 bits (223), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 189/423 (44%), Gaps = 68/423 (16%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLF 1067
            + K S + V++IGS   F    D +I     G  V G + KVD +  L+ I    K +  
Sbjct: 8    TAKNSQVAVNDIGSADEFLAAVDETIKYFNDGDIVEGTIVKVDRDEVLVDIG--YKTEGV 65

Query: 1068 ILDSAY------EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1121
            IL          +P+E+ E      +G  +   VL+  KE K  RL+L   +        
Sbjct: 66   ILSRELSIKHDVDPAEVVE------VGDPIEALVLT--KEDKDGRLMLSKKRAQYERAWG 117

Query: 1122 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            DI     +   +EG +V G + +++ G  GL+V IG   +      E++ +    P  G 
Sbjct: 118  DIE----KVKENEG-VVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLTPYIG- 169

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
                          Q V  K++E+ +      +V LS R+ L+   ST   D        
Sbjct: 170  --------------QKVDAKIIELDKNRN---NVVLSRRAWLEETQSTVRHDF------- 205

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
                  ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 206  ------LQTLQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVTVG 258

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLF 1360
              V   VL V+   +RV ++LK +      +    + +  HV G IV G++ ++  +G F
Sbjct: 259  DEVTVEVLDVDMDRERVSLSLKAT-----QEDPWQHFARTHVIGQIVPGKVTKLVPFGAF 313

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1420
            + +E+  + GL H+SEL+  HVD  E +    E V VK++ +D E+RRISL +K +    
Sbjct: 314  VRVED-GIEGLVHISELAVRHVDLPEQVVTVDETVYVKVIDIDLERRRISLSLKQANEGV 372

Query: 1421 DAD 1423
            D D
Sbjct: 373  DPD 375



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPNEVVTVGDEVTVEVLD 267

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G  
Sbjct: 268 VDMDRERVSLSLKATQEDPWQHFARTHVIGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +     P  +  V + V  +++      RRI+LS 
Sbjct: 325 HISELAVRHVDLPEQVVTVDETVYVKVIDIDLERRRISLSL 365



 Score = 47.8 bits (112), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 164/389 (42%), Gaps = 39/389 (10%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    +V      + +     +S    V P +  +VG  +   VL  + 
Sbjct: 39  GDIVEGTIVKVDRDEVLVDIGYKTEGVILSRELSIKHDVDPAEVVEVGDPIEALVLTKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  +  +  G + ++ K G  V    G++GF P S
Sbjct: 99  KDGRLMLSKKRAQYERAWGDIEKVKE--NEGVVTGTVIEVVKGGLIVDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ V  +I+      +++  SRR  L       R      ++
Sbjct: 155 LVEMRRVRDLTP----YIGQKVDAKIIELDKNRNNVVLSRRAWLEETQSTVRHDFLQTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H      V+  G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPN---EVVTVGDEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  Q      +H+    +V G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQHFAR--THV-IGQIVPGKVTKLVPFGAFVRVEDGIE 321

Query: 662 GFAPRSK-AVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASFM 718
           G    S+ AV  +  DL  +   V ++V   ++D++ E  RI+LSLKQ+      DA   
Sbjct: 322 GLVHISELAV--RHVDLPEQVVTVDETVYVKVIDIDLERRRISLSLKQANEGVDPDA--- 376

Query: 719 QEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
            E FL      M+Q    +G+  K+ EGF
Sbjct: 377 -EEFLDPALYGMVQEYDEDGN-YKYPEGF 403


>gi|425734868|ref|ZP_18853185.1| 30S ribosomal protein S1 [Brevibacterium casei S18]
 gi|425480804|gb|EKU47968.1| 30S ribosomal protein S1 [Brevibacterium casei S18]
          Length = 492

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK---- 1063
            S++P  + V++IG+   F    D +I     G  V G V KVD +  L+ I    +    
Sbjct: 8    SVQPKQVAVNDIGTAEDFLAAVDETIKYFNDGDIVEGTVVKVDRDEVLVDIGYKTEGVVL 67

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P E+ E      +G  +   VL   KE K  RL+L   +        DI
Sbjct: 68   SRELSIKHDVDPGEVVE------VGDPIEALVL--QKEDKEGRLMLSKKRAQYERAWGDI 119

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
                 +    E  +V G + +++ G  GL+V IG   +      E++ +    P  G   
Sbjct: 120  -----EKIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLAPYIG--- 169

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                        Q V+ K++E+ +      +V LS R+ L+   S    D          
Sbjct: 170  ------------QQVEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRHDF--------- 205

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 206  ----LQTLQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPGEVVTVGDE 260

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  HV G IV G++ ++  +G F+ 
Sbjct: 261  VTVEVLDVDMDRERVSLSLKAT-----QEDPWQHFARTHVIGQIVPGKVTKLVPFGAFVR 315

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E+  + GL H+SEL+  HVD  E +    E + VK++ +D E+RRISL +K +
Sbjct: 316  VED-GIEGLVHISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRISLSLKQA 368



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  PG+   VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPGEVVTVGDEVTVEVLD 267

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G  
Sbjct: 268 VDMDRERVSLSLKATQEDPWQHFARTHVIGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +     P  +  V + +  +++      RRI+LS 
Sbjct: 325 HISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRISLSL 365



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 150/394 (38%), Gaps = 46/394 (11%)

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           V+ K++ V    T      A+  +     D  I  G + K+++    V      +G    
Sbjct: 9   VQPKQVAVNDIGTAEDFLAAVDETIKYFNDGDIVEGTVVKVDRDEVLVDIGYKTEGVVLS 68

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSL 547
            EL +    +P  +  VG  ++  ++       R+ LS        +  D+ K+     +
Sbjct: 69  RELSIKHDVDPGEVVEVGDPIEALVLQKEDKEGRLMLSKKRAQYERAWGDIEKIKEEDGV 128

Query: 548 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 606
           V+G V  V    ++V +  +G+   ++        +E   V       G + + +++ LD
Sbjct: 129 VTGTVIEVVKGGLIVDIGLRGFLPASL--------VEMRRVRDLAPYIGQQVEAKIIELD 180

Query: 607 NESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 665
              +N++LS +  L  +  ++  D    +    V  G V +I+  G FV  LG + G   
Sbjct: 181 KNRNNVVLSRRAWLEQTQSEVRHDFLQTLQKGQVRPGVVSSIVNFGAFVD-LGGVDGLVH 239

Query: 666 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 725
            S+          +   VG  V   +LDV+ +  R++LSLK +           +HF   
Sbjct: 240 VSELSWKHIDHPGEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDP------WQHF--- 290

Query: 726 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT----- 780
                  +  H           +IG ++ GKV +   FG  V  E+  +    I+     
Sbjct: 291 -------ARTH-----------VIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVR 332

Query: 781 HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
           H  L    V     I   ++D+    R + LSLK
Sbjct: 333 HVDLPEQVVSVDETIYVKVIDIDLERRRISLSLK 366



 Score = 48.1 bits (113), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 166/388 (42%), Gaps = 37/388 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    +V      + +     +S    V PG+  +VG  +   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLVDIGYKTEGVVLSRELSIKHDVDPGEVVEVGDPIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 99  KEGRLMLSKKRAQYERAWGDIEKIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ V+ +I+      +++  SRR  L       R      ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRHDFLQTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H      V+  G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVTVGDEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  Q      +H+    +V G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQHFAR--THV-IGQIVPGKVTKLVPFGAFVRVEDGIE 321

Query: 662 GFAPRSK-AVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           G    S+ AV  +  DL  +   V +++   ++D++ E  RI+LSLKQ+       +   
Sbjct: 322 GLVHISELAV--RHVDLPEQVVSVDETIYVKVIDIDLERRRISLSLKQANEGVDPEA--- 376

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGF 747
           E FL      M Q    +G+  K+ EGF
Sbjct: 377 EEFLDPALYGMPQEYDEDGN-YKYPEGF 403


>gi|311742677|ref|ZP_07716486.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272]
 gi|311314305|gb|EFQ84213.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272]
          Length = 489

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 183/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G + K+D +  LL I       + ++   +
Sbjct: 14   VAVNDIGSAEDFLAAIDKTIKYFNDGDIVDGTIVKIDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  V   VL   KE K  RL+L   +        DI     +
Sbjct: 74   KHDIDPNEV------VALGDTVEALVL--QKEDKEGRLILSKKRAQYERAWGDIEKIKAE 125

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
              + EG ++   + K     GGL++ IG   +      E++ +   DP  G         
Sbjct: 126  DGVVEGTVI--EVVK-----GGLIMDIGLRGFLPASLVEMRRVRDLDPYIG--------- 169

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S    +  T+            
Sbjct: 170  ------QKIEAKIIELDKNRN---NVVLSRRAWLEQTQSAVRQNFLTE------------ 208

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G + ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 209  -LKKGQVRKGVISSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVQVGDEVTVEVL 266

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 267  DVDMDRERVSLSLKAT-----QEDPWQHFARTHQIGQIVPGKVTKLVPFGAFVRVEE-GI 320

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HV+  E + + G+ V VKI+ +D E+RRISL +K +
Sbjct: 321  EGLVHISELAERHVEIPEQVVQIGDSVMVKIIDIDLERRRISLSLKQA 368



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 147/351 (41%), Gaps = 37/351 (10%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ +D    ++      + + P   +S    + P +   +G  +   VL  + 
Sbjct: 39  GDIVDGTIVKIDRDEVLLDIGYKTEGVIPSRELSIKHDIDPNEVVALGDTVEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +A D ++  G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKI-KAEDGVV-EGTVIEVVKGGLIMDI--GLRGFLPAS 154

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R +  
Sbjct: 155 LVEMRRVRDLDP--------YIGQKIEAKIIELDKNRNNVVLSRRAWLEQTQSAVRQNFL 206

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             +K G +  GV+  +      V +   G   G +    L+  H++H      V++ G E
Sbjct: 207 TELKKGQVRKGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPN---EVVQVGDE 260

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 657
              ++L +D +   + LS K +  +  Q     A       +V G V  ++  G FVR  
Sbjct: 261 VTVEVLDVDMDRERVSLSLKATQEDPWQHF---ARTHQIGQIVPGKVTKLVPFGAFVRVE 317

Query: 658 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
             + G    S+  +       +   +G SV   I+D++ E  RI+LSLKQ+
Sbjct: 318 EGIEGLVHISELAERHVEIPEQVVQIGDSVMVKIIDIDLERRRISLSLKQA 368



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 113/261 (43%), Gaps = 42/261 (16%)

Query: 1075 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1130
            P+ L E +R      +IG+ +   ++ ++K +  + L  R + +    +T      N  T
Sbjct: 152  PASLVEMRRVRDLDPYIGQKIEAKIIELDKNRNNVVLSRRAWLE----QTQSAVRQNFLT 207

Query: 1131 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
             + +G +  G IS I++   G  V +G  + G VH +EL    +  P      G      
Sbjct: 208  ELKKGQVRKGVISSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPNEVVQVG------ 258

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
              DE   V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 259  --DE---VTVEVLDVDMDRE---RVSLSLKATQE---------------DPWQHFARTHQ 295

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   IG  V  +++ 
Sbjct: 296  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQIGDSVMVKIID 353

Query: 1311 VEPLSKRVEVTLKTSDSRTAS 1331
            ++   +R+ ++LK ++   A+
Sbjct: 354  IDLERRRISLSLKQANETEAA 374


>gi|423349119|ref|ZP_17326775.1| ribosomal protein S1 [Scardovia wiggsiae F0424]
 gi|393703348|gb|EJD65549.1| ribosomal protein S1 [Scardovia wiggsiae F0424]
          Length = 493

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 174/384 (45%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V K+D++  LL I       + ++   +     P ++ E      +G  +   
Sbjct: 36   GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDIAPEDVVE------VGDTI--E 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1153
             L + KE K  RL+L   +        D+        I E D +V G + + + G  GL+
Sbjct: 88   ALVVTKEDKDGRLILSKKRAQYERAWGDVEK------IKEADGVVEGTVIEAVKG--GLI 139

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V IG   +      E++ +    P  G               Q ++ K+LE+ +      
Sbjct: 140  VDIGLRGFLPASLVEMRRVRDLAPYIG---------------QKIQAKILELDKNRN--- 181

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
            +V LS R  L+   S                   +  L    + +G + ++ + G F+ L
Sbjct: 182  NVVLSRREYLEETQSEVRETF-------------LSQLKKGQVREGTISSLVNFGAFVDL 228

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++LK++      + 
Sbjct: 229  G-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKST-----QED 282

Query: 1334 EINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
               + +  HV G IV G+I ++  +G+F+++++  + GL H+SEL+  HV+N ET+ + G
Sbjct: 283  PWQHFARTHVPGQIVKGKITKIVQFGVFVSVDD-GIEGLIHISELANRHVENPETVVKPG 341

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            E V VK++ VD ++RRISL +K +
Sbjct: 342  ETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G V +G + ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQVREGTISSLVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +RI+++ K T          ++       I  G ITKI + G FV   +G++G
Sbjct: 263 LDVDLDRERISLSLKSTQEDPWQHFARTHVPGQ---IVKGKITKIVQFGVFVSVDDGIEG 319

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LIHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSL 362



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 150/374 (40%), Gaps = 44/374 (11%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +     P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDIAPEDVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 569
            ++  +++      R+ LS        +  D+ K+     GVV+     AV   +I    
Sbjct: 85  TIEALVVTKEDKDGRLILSKKRAQYERAWGDVEKIKE-ADGVVEGTVIEAVKGGLIVDIG 143

Query: 570 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL- 627
            +G +P    A  +E   V       G +   ++L LD   +N++LS +  L  +  ++ 
Sbjct: 144 LRGFLP----ASLVEMRRVRDLAPYIGQKIQAKILELDKNRNNVVLSRREYLEETQSEVR 199

Query: 628 PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 687
            +  S +    V  G + +++  G FV  LG + G    S+         S+   VG  V
Sbjct: 200 ETFLSQLKKGQVREGTISSLVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 688 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
              +LDV+ +  RI+LSLK     ST     Q HF          +  H           
Sbjct: 259 TVEVLDVDLDRERISLSLK-----STQEDPWQ-HF----------ARTH----------- 291

Query: 748 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAIL 800
           + G +++GK+ +   FGV VS ++   + G I   +LA   VE+       G  +   ++
Sbjct: 292 VPGQIVKGKITKIVQFGVFVSVDDG--IEGLIHISELANRHVENPETVVKPGETVFVKVI 349

Query: 801 DVAKAERLVDLSLK 814
           DV    R + LSLK
Sbjct: 350 DVDLDRRRISLSLK 363



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 151/355 (42%), Gaps = 29/355 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + + P    +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDIAPEDVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGDVEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    +K
Sbjct: 152 LVEMRRVRDLAP----YIGQKIQAKILELDKNRNNVVLSRREYLEETQSEVRETFLSQLK 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  G +  +      V +   G   G I    L+  H++H +    V+K G +   +
Sbjct: 208 KGQVREGTISSLVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  Q      +H+ P  +V G +  I++ G FV     + 
Sbjct: 262 VLDVDLDRERISLSLKSTQEDPWQHFAR--THV-PGQIVKGKITKIVQFGVFVSVDDGIE 318

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
           G    S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 319 GLIHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 84/412 (20%), Positives = 171/412 (41%), Gaps = 81/412 (19%)

Query: 935  SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTA 994
            ++D G LV+  + +I   E+ L  G    G I   E++  K    E++    ++G T+ A
Sbjct: 32   NFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDIAPEDVV---EVGDTIEA 88

Query: 995  RIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1054
             ++ K +K                 L +S+  ++           +R  G V K+     
Sbjct: 89   LVVTKEDKD--------------GRLILSKKRAQY----------ERAWGDVEKIKEADG 124

Query: 1055 LL--TISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLL 1105
            ++  T+   +K  L I+D     + P+ L E +R      +IG+ +   +L ++K +  +
Sbjct: 125  VVEGTVIEAVKGGL-IVDIGLRGFLPASLVEMRRVRDLAPYIGQKIQAKILELDKNRNNV 183

Query: 1106 RLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYG 1162
             L  R + +       +  ++  +TF+ +   G +  G IS +++   G  V +G  + G
Sbjct: 184  VLSRREYLE-------ETQSEVRETFLSQLKKGQVREGTISSLVNF--GAFVDLG-GVDG 233

Query: 1163 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1222
             +H +EL    +  P      G             V  +VL++         + LSL+S+
Sbjct: 234  LIHVSELSWKHIDHPSEVVKVGDK-----------VTVEVLDVDLDRE---RISLSLKST 279

Query: 1223 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1282
             +                P +H  +     P  IV+G +  +   G F+ +   ++  + 
Sbjct: 280  QE---------------DPWQHFARTH--VPGQIVKGKITKIVQFGVFVSVDDGIEGLIH 322

Query: 1283 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
            +S L++ +VE+PE     G+ V  +V+ V+   +R+ ++LK ++      SE
Sbjct: 323  ISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPASE 374


>gi|430743377|ref|YP_007202506.1| 30S ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
 gi|430015097|gb|AGA26811.1| ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
          Length = 602

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 176/386 (45%), Gaps = 52/386 (13%)

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1093
             D+++GQ  TG V  + +  A + +   +   L I D  +E   L+    R  + + +  
Sbjct: 198  ADIAVGQVRTGTVKNLADFGAFVDLG-GIDGLLHITDMGWE--RLKHPGERLRVEEKIEV 254

Query: 1094 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--G 1151
             +L+++KE+  + L L+                N    + E   VG R++  +  V   G
Sbjct: 255  MILNVDKERGKIALGLKQL------------TANPWEQVAEKYAVGARVTGEVVNVMSYG 302

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
              V++   + G VH +E+           +      P      G+ V+  VL I++  R 
Sbjct: 303  AFVKLESGIEGLVHISEMS----------WTRRINHPSEVVQAGEQVEVVVLGINQQKR- 351

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
                E+SL     GM  T +              + +E   P  +V+G V+N+T+ G F+
Sbjct: 352  ----EISL-----GMKQTQADPWD----------QVVEKYPPGTMVEGTVRNLTNYGAFV 392

Query: 1272 MLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
             +   +D  + +S++S    +  P +    G+ V+ +VLSV+   KR+ + LK       
Sbjct: 393  EVEEGIDGLLHVSDMSWTRKIGHPNEVLEKGQTVSCQVLSVDLERKRIALGLK---QLRQ 449

Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1390
               E +       GDIV G+  ++ ++G+F+ +E   L GL H+SEL++  +D+ E +  
Sbjct: 450  DPWETDIPDRYTAGDIVTGKATKLTNFGVFVELE-PGLEGLLHISELADHKIDSPEEVVN 508

Query: 1391 AGEKVKVKILKVDKEKRRISLGMKSS 1416
             G+ ++V++L+VD+ +R+I L  + +
Sbjct: 509  VGDDIEVRVLRVDRGERKIGLSRRKA 534



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 135/285 (47%), Gaps = 40/285 (14%)

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
             EGD+V G++++ +   GGL+V IG              I    P S  D  +   ++ Y
Sbjct: 115  REGDVVTGKVTRKIK--GGLLVDIG--------------INAFLPASQVDIRRPPDIADY 158

Query: 1193 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
             + + V+C +L I    R   ++ +S RS ++         L             + D++
Sbjct: 159  LDRE-VRCVILSIDEDRR---NIVVSRRSLIETERVALREQL-------------LADIA 201

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
               +  G VKN+   G F+ L   +D  + ++++    ++ P +   + + +   +L+V+
Sbjct: 202  VGQVRTGTVKNLADFGAFVDLG-GIDGLLHITDMGWERLKHPGERLRVEEKIEVMILNVD 260

Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
                ++ + LK   +    Q          VG  V G++  V SYG F+ +E + + GL 
Sbjct: 261  KERGKIALGLKQLTANPWEQV----AEKYAVGARVTGEVVNVMSYGAFVKLE-SGIEGLV 315

Query: 1373 HVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            H+SE+S    +++   + +AGE+V+V +L ++++KR ISLGMK +
Sbjct: 316  HISEMSWTRRINHPSEVVQAGEQVEVVVLGINQQKREISLGMKQT 360



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 143/333 (42%), Gaps = 21/333 (6%)

Query: 317 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG-LATGI--LKASAFEGLVFTHSDVKP 373
           I+D+  E ++   ++ +    + V IL      G +A G+  L A+ +E +   ++    
Sbjct: 231 ITDMGWERLKHPGERLRVEEKIEVMILNVDKERGKIALGLKQLTANPWEQVAEKYA---V 287

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVK 432
           G  V G+V+ V S+GA V+   G++ L  +  MS    I  P +  + G ++   VLG+ 
Sbjct: 288 GARVTGEVVNVMSYGAFVKLESGIEGLVHISEMSWTRRINHPSEVVQAGEQVEVVVLGIN 347

Query: 433 SKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
            ++  I++  K+T       ++  Y   T   +  G +  +  +G FV    G+ G    
Sbjct: 348 QQKREISLGMKQTQADPWDQVVEKYPPGT---MVEGTVRNLTNYGAFVEVEEGIDGLLHV 404

Query: 491 SELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGS 546
           S++        P+ +   GQ V C+++S     +RI L        P      D    G 
Sbjct: 405 SDMSWTRKIGHPNEVLEKGQTVSCQVLSVDLERKRIALGLKQLRQDPWETDIPDRYTAGD 464

Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVL 605
           +V+G    +T     V+V  +   +G +    LADH       + V+  G + + ++L +
Sbjct: 465 IVTGKATKLTNFG--VFVELEPGLEGLLHISELADH--KIDSPEEVVNVGDDIEVRVLRV 520

Query: 606 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 638
           D     + LS + +  + A +   +AS   P +
Sbjct: 521 DRGERKIGLSRRKAQDSPADREEGEASSAPPAA 553



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 137/366 (37%), Gaps = 43/366 (11%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           +D+  G V  G V  +  FGA V   GG+  L  +  M    +  PG++ +V  ++   +
Sbjct: 198 ADIAVGQVRTGTVKNLADFGAFVDL-GGIDGLLHITDMGWERLKHPGERLRVEEKIEVMI 256

Query: 429 LGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V  +R  I +  K+        +   YA         G +  +  +G FV+  +G++G
Sbjct: 257 LNVDKERGKIALGLKQLTANPWEQVAEKYAVGAR---VTGEVVNVMSYGAFVKLESGIEG 313

Query: 487 FAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--- 542
               SE+        PS +   G+ V+  ++      R I+L   MK T+    D V   
Sbjct: 314 LVHISEMSWTRRINHPSEVVQAGEQVEVVVLGINQQKREISLG--MKQTQADPWDQVVEK 371

Query: 543 -KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD- 600
              G++V G V  +T     V V            E   D L H + M    K G+  + 
Sbjct: 372 YPPGTMVEGTVRNLTNYGAFVEV------------EEGIDGLLHVSDMSWTRKIGHPNEV 419

Query: 601 ---------QLLVLDNESSNLLLSAKYSLINSAQQLPSDA---SHIHPNSVVHGYVCNII 648
                    Q+L +D E   + L  K       +Q P +           +V G    + 
Sbjct: 420 LEKGQTVSCQVLSVDLERKRIALGLK-----QLRQDPWETDIPDRYTAGDIVTGKATKLT 474

Query: 649 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
             G FV     L G    S+  D +     +   VG  +   +L V+    +I LS +++
Sbjct: 475 NFGVFVELEPGLEGLLHISELADHKIDSPEEVVNVGDDIEVRVLRVDRGERKIGLSRRKA 534

Query: 709 CCSSTD 714
             S  D
Sbjct: 535 QDSPAD 540



 Score = 45.4 bits (106), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 100/486 (20%), Positives = 194/486 (39%), Gaps = 84/486 (17%)

Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 416
           +  A+E +V  H   + G VV GKV      G +V    G+ A  P    S+ +I +P  
Sbjct: 103 RMRAWERVVSKH---REGDVVTGKVTRKIKGGLLVDI--GINAFLP---ASQVDIRRPPD 154

Query: 417 KFK-VGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSS--YAEATDRLITHGWITKIE 472
               +  E+   +L + + +R  V  +++L++++   L     A+     +  G +  + 
Sbjct: 155 IADYLDREVRCVILSIDEDRRNIVVSRRSLIETERVALREQLLADIAVGQVRTGTVKNLA 214

Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 532
             G FV    G+ G    +++G +    P     V + ++  I++      +I L     
Sbjct: 215 DFGAFVDL-GGIDGLLHITDMGWERLKHPGERLRVEEKIEVMILNVDKERGKIALGLKQL 273

Query: 533 PTRVSEDDLVK--LGSLVSG-VVDVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHAT 587
                E    K  +G+ V+G VV+V++  A   +V  +   +G +    ++    + H +
Sbjct: 274 TANPWEQVAEKYAVGARVTGEVVNVMSYGA---FVKLESGIEGLVHISEMSWTRRINHPS 330

Query: 588 VMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 646
               V++ G + + +++ ++ +   + L  K +  +   Q+        P ++V G V N
Sbjct: 331 ---EVVQAGEQVEVVVLGINQQKREISLGMKQTQADPWDQV---VEKYPPGTMVEGTVRN 384

Query: 647 IIETGCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYVG---------QSVRSNILDVN 695
           +   G FV             + +DG    +D+S T  +G         Q+V   +L V+
Sbjct: 385 LTNYGAFVEV----------EEGIDGLLHVSDMSWTRKIGHPNEVLEKGQTVSCQVLSVD 434

Query: 696 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 755
            E  RI L LKQ                           + +  E    + +  G ++ G
Sbjct: 435 LERKRIALGLKQL--------------------------RQDPWETDIPDRYTAGDIVTG 468

Query: 756 KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERL 808
           K  +  +FGV V  E    + G +   +LA   ++S       G  I+  +L V + ER 
Sbjct: 469 KATKLTNFGVFVELE--PGLEGLLHISELADHKIDSPEEVVNVGDDIEVRVLRVDRGERK 526

Query: 809 VDLSLK 814
           + LS +
Sbjct: 527 IGLSRR 532


>gi|295426289|ref|ZP_06818949.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
 gi|295064028|gb|EFG54976.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
          Length = 401

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDR 258

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +++K ++     Q+     +NLH GDI  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  NRISLSIKQTEPSPFEQA----TANLHDGDIFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 14/173 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    KVG ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDN 256

Query: 434 --KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 487
              RI+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRNRISLSIKQTEP-------SPFEQATANLHDGDIFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S ++
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSNE 362



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            +GK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  MGKTMKLKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGA 213

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            FI +   +  GL H+SE+S  HVD    + + G+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQT 268



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 34/198 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVG-GVDGLVHISEISYKHVDKP--------SDVLK---V 243

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I                     +  N   LS     P    +   +L   
Sbjct: 244  GQDVKVKVIGID--------------------NDRNRISLSIKQTEPSPFEQATANLHDG 283

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             I +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1315 SKRVEVTLKTSDSRTASQ 1332
             +R+ +++K +DS  +S 
Sbjct: 344  DRRISLSIKAADSNASSN 361



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 136/325 (41%), Gaps = 42/325 (12%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA---ILSSYAEATDRLITHG 466
           ++VK G KFK    LV R  G   +        T +K + A   +   Y   T      G
Sbjct: 64  DLVKTGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYNKLQKDYEAGTP---IEG 117

Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIP 520
            +T   + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P
Sbjct: 118 TVTSSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYMGKTMKLKITEIDP 167

Query: 521 ASRRINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 574
              R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +
Sbjct: 168 NKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLV 224

Query: 575 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 633
               ++   +H      V+K G +   +++ +DN+ + + LS K +  +  +Q     ++
Sbjct: 225 HISEIS--YKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSPFEQA---TAN 279

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +H   +  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+
Sbjct: 280 LHDGDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLN 339

Query: 694 VNSETGRITLSLK--QSCCSSTDAS 716
           ++    RI+LS+K   S  SS ++S
Sbjct: 340 IDPSDRRISLSIKAADSNASSNESS 364


>gi|300812171|ref|ZP_07092615.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            PB2003/044-T3-4]
 gi|300496856|gb|EFK31934.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            PB2003/044-T3-4]
          Length = 401

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 139/271 (51%), Gaps = 45/271 (16%)

Query: 1181 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1235
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1236 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1269
                    T++D P K      H E IE+            L    +V+G V  +T+ G 
Sbjct: 154  GKAIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGS 212

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
              Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HVSE+S  HVD    + 
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEISYKHVDKPSDVL 326

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1420
              G+KVKVK+L +D  KRRISL +K +  +N
Sbjct: 327  TVGQKVKVKVLNIDPSKRRISLSIKQADPEN 357



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 120/249 (48%), Gaps = 20/249 (8%)

Query: 288 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 344
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKAIKVKITEIDPAKNRLI- 172

Query: 345 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 462
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 463 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 520
             +  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDP 341

Query: 521 ASRRINLSF 529
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 117/248 (47%), Gaps = 38/248 (15%)

Query: 1086 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1145
            +IGKA+   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD+V GR+S++
Sbjct: 152  YIGKAIKVKITEIDPAKN--RLILSHKE--LIEEEREQAFENVASQLVVGDVVEGRVSRL 207

Query: 1146 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
             +   G  V IG  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  TN--FGSFVDIG-GVDGLVHISEISYKHVDKPS--------DVLK---VGQDVKVKVIGI 253

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
                     + LS++ +                  P    +    L+   +++G VK++T
Sbjct: 254  DND---RHRISLSIKQT-----------------EPSPFEQATSSLNEGDVIEGEVKSLT 293

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
            + G F+ ++  +   V +S +S  +V+ P     +G+ V  +VL+++P  +R+ +++K +
Sbjct: 294  NFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQA 353

Query: 1326 DSRTASQS 1333
            D   AS S
Sbjct: 354  DPENASSS 361


>gi|147816462|emb|CAN64048.1| hypothetical protein VITISV_019942 [Vitis vinifera]
          Length = 378

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 5/77 (6%)

Query: 937  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 996
            DV S  + EITEIKP EL+LK GIGFHGR+HITEV D+  NV+EN F N +IGQTV  RI
Sbjct: 191  DVNS--ETEITEIKPFELKLKLGIGFHGRVHITEVCDE--NVIENPFGNLRIGQTVFGRI 246

Query: 997  IAKSNKPDMK-KSFLWE 1012
            +AK+NK +   K+  WE
Sbjct: 247  VAKANKSENNGKNHQWE 263


>gi|383807350|ref|ZP_09962910.1| 30S ribosomal protein S1 [Candidatus Aquiluna sp. IMCC13023]
 gi|383298704|gb|EIC91319.1| 30S ribosomal protein S1 [Candidatus Aquiluna sp. IMCC13023]
          Length = 485

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 191/417 (45%), Gaps = 70/417 (16%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKA--- 1064
            + KP  + V++IGS+  F    + ++     G  ++G V K+D +  LL +    +    
Sbjct: 6    TAKPVQIAVNDIGSEADFLAAVEATLKFFNDGDLISGTVVKIDRDEVLLDVGYKTEGVIP 65

Query: 1065 --QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1122
              +L I   A +P+++        +G A+   VL   KE K  RL+L   +        D
Sbjct: 66   SRELSIRQDA-DPNDI------VKVGDAIEALVL--QKEDKEGRLILSKKRAQYERAWGD 116

Query: 1123 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            +        I E D +V G + +++ G  G++V IG   +      EL+ +    P  G 
Sbjct: 117  VER------IKEADGVVTGTVIEVVKG--GVIVDIGLRGFLPASLIELRRVRDLGPYLGT 168

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
            +               V+ K+LE+ +      +V LS R+ L+   S N S         
Sbjct: 169  E---------------VEAKILELDKNRN---NVVLSRRALLEQSQSENRSTF------- 203

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
                  + DL    +  G V ++ + G FI L   +D  V +S LS  ++E   +   +G
Sbjct: 204  ------LNDLVKGQVRTGVVSSIVNFGAFIDLG-GVDGLVHVSELSWKHIEHASEVVEVG 256

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGL 1359
            + V   VL V+   +RV ++LK      A+Q +   L +  H +G  + G++ ++  +G 
Sbjct: 257  QEVTVEVLEVDQERERVSLSLK------ATQEDPWQLFARTHAIGQYIPGKVTKIVPFGA 310

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            F+ + +  + GL H+SELS  HV++ + +    ++V VK++ +D E+RRISL +K +
Sbjct: 311  FVRVAD-GIEGLVHISELSSKHVEHADQVVTVNQEVFVKLIDIDLERRRISLSLKQA 366



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 151/352 (42%), Gaps = 37/352 (10%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G ++ G V+ +D    ++      + + P   +S  +   P    KVG  +   VL  + 
Sbjct: 37  GDLISGTVVKIDRDEVLLDVGYKTEGVIPSRELSIRQDADPNDIVKVGDAIEALVLQKED 96

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA D ++T G + ++ K G  V    G++GF P S
Sbjct: 97  KEGRLILSKKRAQYERAWGDVERIKEA-DGVVT-GTVIEVVKGGVIVDI--GLRGFLPAS 152

Query: 492 ELGL----DPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVS-EDD 540
            + L    D G       ++G  V+ +I+      +++  SRR  L       R +  +D
Sbjct: 153 LIELRRVRDLGP------YLGTEVEAKILELDKNRNNVVLSRRALLEQSQSENRSTFLND 206

Query: 541 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEF 599
           LVK G + +GVV  +      + +   G   G +    L+  H+EHA+    V++ G E 
Sbjct: 207 LVK-GQVRTGVVSSIVNFGAFIDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEV 259

Query: 600 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFL 657
             ++L +D E   + LS K +  +  Q      +  H     + G V  I+  G FVR  
Sbjct: 260 TVEVLEVDQERERVSLSLKATQEDPWQLF----ARTHAIGQYIPGKVTKIVPFGAFVRVA 315

Query: 658 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
             + G    S+          +   V Q V   ++D++ E  RI+LSLKQ+ 
Sbjct: 316 DGIEGLVHISELSSKHVEHADQVVTVNQEVFVKLIDIDLERRRISLSLKQAL 367


>gi|313123536|ref|YP_004033795.1| ssu ribosomal protein s1p [Lactobacillus delbrueckii subsp.
            bulgaricus ND02]
 gi|422845529|ref|ZP_16892239.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis DSM
            20072]
 gi|312280099|gb|ADQ60818.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
            bulgaricus ND02]
 gi|325684297|gb|EGD26470.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis DSM
            20072]
          Length = 401

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 139/271 (51%), Gaps = 45/271 (16%)

Query: 1181 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1235
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1236 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1269
                    T++D P K      H E IE+            L    +V+G V  +T+ G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGS 212

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
              Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HVSE+S  HVD    + 
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEISYKHVDKPSDVL 326

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1420
              G+KVKVK+L +D  KRRISL +K +  +N
Sbjct: 327  TVGQKVKVKVLNIDPSKRRISLSIKQADPEN 357



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 120/249 (48%), Gaps = 20/249 (8%)

Query: 288 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 344
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 345 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 462
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 463 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 520
             +  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDP 341

Query: 521 ASRRINLSF 529
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 34/199 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD+V GR+S++ +   G  V IG  + G VH +E+    V  P         D L     
Sbjct: 197  GDVVEGRVSRLTN--FGSFVDIG-GVDGLVHISEISYKHVDKP--------SDVLK---V 242

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++ +                  P    +    L+  
Sbjct: 243  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATSSLNEG 282

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             +++G VK++T+ G F+ ++  +   V +S +S  +V+ P     +G+ V  +VL+++P 
Sbjct: 283  DVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPS 342

Query: 1315 SKRVEVTLKTSDSRTASQS 1333
             +R+ +++K +D   AS S
Sbjct: 343  KRRISLSIKQADPENASSS 361



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 140/365 (38%), Gaps = 53/365 (14%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 538
           GV+G   R +   D          +G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTFKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 539 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 596 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 654
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  +   G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFV 214

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 775 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 827
           + G +   +++   V+        G  ++  +L++  ++R + LS+K    +    +N  
Sbjct: 305 IQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQADPENASSSNDR 364

Query: 828 RQAQK 832
            +A++
Sbjct: 365 PRARR 369


>gi|260903786|ref|ZP_05912108.1| 30S ribosomal protein S1 [Brevibacterium linens BL2]
          Length = 495

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK---- 1063
            S++P  + V++IG+   F    D +I     G  V G V KVD +  L+ I    +    
Sbjct: 8    SVQPKQVAVNDIGTAEDFLAAVDETIKYFNDGDIVEGTVVKVDRDEVLVDIGYKTEGVVL 67

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P E+ E      +G  +   VL   KE K  RL+L   +        DI
Sbjct: 68   SRELSIKHDVDPGEVVE------VGDEIEALVL--QKEDKEGRLMLSKKRAQYERAWGDI 119

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
                 +    +  +V G + +++ G  GL+V IG   +      E++ +    P  G   
Sbjct: 120  -----EKIKEDNGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLAPYIG--- 169

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                        Q V+ K++E+ +      +V LS R+ L+   S    D          
Sbjct: 170  ------------QQVEAKIIELDKNRN---NVVLSRRAWLEQTQSAVRHDF--------- 205

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 206  ----LQTLQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPGEVVTVGDE 260

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  HV G IV G++ ++  +G F+ 
Sbjct: 261  VTVEVLDVDMDRERVSLSLKAT-----QEDPWQHFARTHVIGQIVPGKVTKLVPFGAFVR 315

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E+  + GL H+SEL+  HVD  E +    E + VK++ +D E+RRISL +K +
Sbjct: 316  VED-GIEGLVHISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  PG+   VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPGEVVTVGDEVTVEVLD 267

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G  
Sbjct: 268 VDMDRERVSLSLKATQEDPWQHFARTHVIGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +     P  +  V + +  +++      RRI+LS 
Sbjct: 325 HISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRISLSL 365



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 165/388 (42%), Gaps = 37/388 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    +V      + +     +S    V PG+  +VG E+   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLVDIGYKTEGVVLSRELSIKHDVDPGEVVEVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G++GF P S
Sbjct: 99  KEGRLMLSKKRAQYERAWGDIEKIKE--DNGVVTGTVIEVVKGGLIVDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ V+ +I+      +++  SRR  L       R      ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQVEAKIIELDKNRNNVVLSRRAWLEQTQSAVRHDFLQTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H      V+  G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVTVGDEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  Q      +H+    +V G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQHFAR--THV-IGQIVPGKVTKLVPFGAFVRVEDGIE 321

Query: 662 GFAPRSK-AVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           G    S+ AV  +  DL  +   V +++   ++D++ E  RI+LSLKQ+       +   
Sbjct: 322 GLVHISELAV--RHVDLPEQVVSVDETIYVKVIDIDLERRRISLSLKQANEGVDPEA--- 376

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGF 747
           + FL      M Q    +G+  K+ EGF
Sbjct: 377 DEFLDPALYGMPQEYDEDGN-YKYPEGF 403



 Score = 47.8 bits (112), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 149/394 (37%), Gaps = 46/394 (11%)

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           V+ K++ V    T      A+  +     D  I  G + K+++    V      +G    
Sbjct: 9   VQPKQVAVNDIGTAEDFLAAVDETIKYFNDGDIVEGTVVKVDRDEVLVDIGYKTEGVVLS 68

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSL 547
            EL +    +P  +  VG  ++  ++       R+ LS        +  D+ K+     +
Sbjct: 69  RELSIKHDVDPGEVVEVGDEIEALVLQKEDKEGRLMLSKKRAQYERAWGDIEKIKEDNGV 128

Query: 548 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 606
           V+G V  V    ++V +  +G+   ++        +E   V       G + + +++ LD
Sbjct: 129 VTGTVIEVVKGGLIVDIGLRGFLPASL--------VEMRRVRDLAPYIGQQVEAKIIELD 180

Query: 607 NESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 665
              +N++LS +  L  +   +  D    +    V  G V +I+  G FV  LG + G   
Sbjct: 181 KNRNNVVLSRRAWLEQTQSAVRHDFLQTLQKGQVRPGVVSSIVNFGAFVD-LGGVDGLVH 239

Query: 666 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 725
            S+          +   VG  V   +LDV+ +  R++LSLK +           +HF   
Sbjct: 240 VSELSWKHIDHPGEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDP------WQHF--- 290

Query: 726 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT----- 780
                  +  H           +IG ++ GKV +   FG  V  E+  +    I+     
Sbjct: 291 -------ARTH-----------VIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVR 332

Query: 781 HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
           H  L    V     I   ++D+    R + LSLK
Sbjct: 333 HVDLPEQVVSVDETIYVKVIDIDLERRRISLSLK 366


>gi|300871842|ref|YP_003786715.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000]
 gi|300689543|gb|ADK32214.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000]
          Length = 556

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 15/345 (4%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S++K G +V+GKV  ++ FGA +Q   G+     +P+MS  +I+ P      G E  F+V
Sbjct: 189 SNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQV 248

Query: 429 LGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
           L V K KR      K L               D  I  G +T ++K G FV  Y GV+G 
Sbjct: 249 LSVDKEKRKVDLGIKQLEGDTWYKFVEEYHVGD--IIKGEVTTVKKFGAFVNVYEGVEGL 306

Query: 488 APRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 543
              S+L  +     P+    VG  ++C+I+      R++ L        P   +E D   
Sbjct: 307 IHVSDLSWNSHVNNPNDFVKVGSYLECKILDMNVPERKLTLGLKQVKDNPWDSAERDFPV 366

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
             S+   V  +    A  V+ +  G  +G        D + +   +K  IK   E + ++
Sbjct: 367 KSSVKCKVKRIFKDFA--VFELPNGL-EGICDISDF-DWMNNTVNIKDYIKENEEVEMVI 422

Query: 604 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
           + +D +   + LS K++  +  +    D +H H  S+V+G V  II++G  V     L G
Sbjct: 423 MSIDRDKQRIKLSYKHTKESPWRVF--DKAHPH-GSIVNGTVKAIIDSGVIVSLENDLEG 479

Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
           +   S+    +   L     VG+S    + +VN    RI+LS ++
Sbjct: 480 YMHISQIDLPKGETLESVLKVGESYPFVVREVNQVKRRISLSRRE 524



 Score = 79.7 bits (195), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 95/170 (55%), Gaps = 6/170 (3%)

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E + +L    IV+G VKN+   G FI L+  LD  + + N+S   + +P+     G+   
Sbjct: 186  EYLSNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERK 245

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
             +VLSV+   ++V++ +K  +  T  +     +   HVGDI+ G++  V+ +G F+ +  
Sbjct: 246  FQVLSVDKEKRKVDLGIKQLEGDTWYKF----VEEYHVGDIIKGEVTTVKKFGAFVNV-Y 300

Query: 1366 TNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  EGVEGLIHVSDLSWNSHVNNPNDFVKVGSYLECKILDMNVPERKLTLGLK 350



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 1327 SRTASQSEINN------LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1380
            SR   Q E  N      LSNL  GDIV G++K +E +G FI +    L G   +  +S  
Sbjct: 171  SRRVLQEETQNKVIEEYLSNLKEGDIVEGKVKNIEKFGAFIQL-TEGLDGFLAIPNMSWA 229

Query: 1381 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             + N + I   GE+ K ++L VDKEKR++ LG+K
Sbjct: 230  KIINPKNIITKGEERKFQVLSVDKEKRKVDLGIK 263



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 162/430 (37%), Gaps = 71/430 (16%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G I + +    F+ F   V+G   R+E   +P             VK   + ++   
Sbjct: 31  VVSGKIVQFDDTDVFIDFNYKVEGKINRNEFDKEP-------------VKGEEIEAVIKG 77

Query: 523 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGTIPTEHLA- 580
           +  N  +++   R  E D  K   L+   V   TP N VV   I  G++   +       
Sbjct: 78  QDNNKGYVILSKR--EIDKRKAQDLIEDAVKNATPINGVVKEAIKGGFTVSIMGHSAFCP 135

Query: 581 -DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 637
              ++ +  +K     G EF Q  ++D + +  ++ ++  L    Q   +    S++   
Sbjct: 136 FSQIDISRGIKEADYIGKEF-QFKIIDRKGNKDIVVSRRVLQEETQNKVIEEYLSNLKEG 194

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            +V G V NI + G F++    L GF         +  +       G+  +  +L V+ E
Sbjct: 195 DIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKE 254

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             ++ L +KQ                LE             +  K+VE + +G +I+G+V
Sbjct: 255 KRKVDLGIKQ----------------LE-----------GDTWYKFVEEYHVGDIIKGEV 287

Query: 758 HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 811
                FG  V+  E      H     + +H       V+ GS ++  ILD+   ER + L
Sbjct: 288 TTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGSYLECKILDMNVPERKLTL 347

Query: 812 SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
            LK V               K      A +D  V  +V   V+ + +++ V  LP  N  
Sbjct: 348 GLKQV---------------KDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELP--NGL 390

Query: 872 IGYASVSDYN 881
            G   +SD++
Sbjct: 391 EGICDISDFD 400



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 143/325 (44%), Gaps = 52/325 (16%)

Query: 1094 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI---HEGDIVGGRISKILSGVG 1150
             VLS++KEK+ + L ++  +            D    F+   H GDI+ G ++ +     
Sbjct: 247  QVLSVDKEKRKVDLGIKQLE-----------GDTWYKFVEEYHVGDIIKGEVTTVKKF-- 293

Query: 1151 GLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
            G  V +   + G +H ++L  N  V++P        F  +     G +++CK+L+++   
Sbjct: 294  GAFVNVYEGVEGLIHVSDLSWNSHVNNP------NDFVKV-----GSYLECKILDMNVPE 342

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
            R    + L L+   D    +   D         K     +D +   +  G ++ +     
Sbjct: 343  R---KLTLGLKQVKDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNG-LEGICDISD 398

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F  ++  +       N+ D   E+ E E  I        +S++   +R++++ K +    
Sbjct: 399  FDWMNNTV-------NIKDYIKENEEVEMVI--------MSIDRDKQRIKLSYKHT---K 440

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
             S   + + ++ H G IV G +K +   G+ +++EN +L G  H+S++     + +E++ 
Sbjct: 441  ESPWRVFDKAHPH-GSIVNGTVKAIIDSGVIVSLEN-DLEGYMHISQIDLPKGETLESVL 498

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMK 1414
            + GE     + +V++ KRRISL  +
Sbjct: 499  KVGESYPFVVREVNQVKRRISLSRR 523


>gi|300781295|ref|ZP_07091149.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
 gi|300533002|gb|EFK54063.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
          Length = 491

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 184/406 (45%), Gaps = 60/406 (14%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1073
            + +++IGS   F    D +I     G  VTG V KVD++  LL I    K +  IL    
Sbjct: 9    VAINDIGSSEEFLAAVDATIKYFNDGDIVTGTVVKVDHDEVLLDIG--YKTEGVILSREL 66

Query: 1074 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL--RPFQDGISDKTVDISNDNMQTF 1131
                  +      IG  +   VL+  KE K  RL+L  +  Q   +  T++    N Q  
Sbjct: 67   SIKHDIDPDEVVQIGDEIDALVLT--KEDKEGRLLLSKKRAQYERAWGTIEELQKNDQP- 123

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
                  V G + +++ G  GL++ IG   +      E++ +   DP  G           
Sbjct: 124  ------VTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG----------- 164

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
                Q ++ K++E+ +      +V LS R+ L+   S   SD              +  L
Sbjct: 165  ----QELEAKIIELDKHRN---NVVLSRRAYLEETQSAVRSDF-------------LHQL 204

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
                + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V
Sbjct: 205  EKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDV 263

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVG 1370
            +   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   + G
Sbjct: 264  DLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEG 317

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            L H+SEL++ HV+  + +   G++V VK++ +D E+RRISL +K +
Sbjct: 318  LVHISELAQRHVEVPDQVVEVGQEVMVKVIDIDLERRRISLSLKQA 363



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LEKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  +  VGQ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVEVGQEVMVKVIDIDLERRRISLSL 360



 Score = 45.4 bits (106), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + +     +S    + P +  ++G E+   VL  + 
Sbjct: 34  GDIVTGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDIDPDEVVQIGDEIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +  D+ +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLLLSKKRAQYERAWGTIEEL-QKNDQPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKHRNNVVLSRRAYLEETQSAVRSDFL 201

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLEKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VGQ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVEVGQEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            +++E      +  M  S    G+ +          +W+EG+
Sbjct: 366 DYIEE--FDPSRYGMADSYDEQGNYIFPEGFDPETNEWMEGY 405


>gi|431807379|ref|YP_007234277.1| 30S ribosomal protein S1 [Brachyspira pilosicoli P43/6/78]
 gi|434382057|ref|YP_006703840.1| 30S ribosomal protein S1 [Brachyspira pilosicoli WesB]
 gi|404430706|emb|CCG56752.1| 30S ribosomal protein S1 [Brachyspira pilosicoli WesB]
 gi|430780738|gb|AGA66022.1| 30S ribosomal protein S1 [Brachyspira pilosicoli P43/6/78]
          Length = 556

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 15/345 (4%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S++K G +V+GKV  ++ FGA +Q   G+     +P+MS  +I+ P      G E  F+V
Sbjct: 189 SNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQV 248

Query: 429 LGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
           L V K KR      K L               D  I  G +T ++K G FV  Y GV+G 
Sbjct: 249 LSVDKEKRKVDLGIKQLEGDTWYKFVEEYHVGD--IIKGEVTTVKKFGAFVNVYEGVEGL 306

Query: 488 APRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 543
              S+L  +     P+    VG  ++C+I+      R++ L        P   +E D   
Sbjct: 307 IHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLKQVKDNPWDSAERDFPV 366

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
             S+   V  +    A  V+ +  G  +G        D + +   +K  IK   E + ++
Sbjct: 367 KSSVKCKVKRIFKDFA--VFELPNGL-EGICDISDF-DWMNNTVNIKDYIKENEEVEMVI 422

Query: 604 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
           + +D +   + LS K++  +  +    D +H H  S+V+G V  II++G  V     L G
Sbjct: 423 MSIDRDKQRIKLSYKHTKESPWRVF--DKAHPH-GSIVNGTVKAIIDSGVIVSLENDLEG 479

Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
           +   S+    +   L     VG+S    + +VN    RI+LS ++
Sbjct: 480 YMHISQIDLPKGETLESVLKVGESYPFVVREVNQVKRRISLSRRE 524



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 95/170 (55%), Gaps = 6/170 (3%)

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E + +L    IV+G VKN+   G FI L+  LD  + + N+S   + +P+     G+   
Sbjct: 186  EYLSNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERK 245

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
             +VLSV+   ++V++ +K  +  T  +     +   HVGDI+ G++  V+ +G F+ +  
Sbjct: 246  FQVLSVDKEKRKVDLGIKQLEGDTWYKF----VEEYHVGDIIKGEVTTVKKFGAFVNV-Y 300

Query: 1366 TNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  EGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLK 350



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 1327 SRTASQSEINN------LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1380
            SR   Q E  N      LSNL  GDIV G++K +E +G FI +    L G   +  +S  
Sbjct: 171  SRRVLQEETQNKVIEEYLSNLKEGDIVEGKVKNIEKFGAFIQL-TEGLDGFLAIPNMSWA 229

Query: 1381 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             + N + I   GE+ K ++L VDKEKR++ LG+K
Sbjct: 230  KIINPKNIITKGEERKFQVLSVDKEKRKVDLGIK 263



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 90/430 (20%), Positives = 162/430 (37%), Gaps = 71/430 (16%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G I + +    F+ F   V+G   R+E   +P             VK   + ++   
Sbjct: 31  VVSGKIVQFDDTDVFIDFNYKVEGKINRNEFDKEP-------------VKGEEIEAVIKG 77

Query: 523 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGTIPTEHLA- 580
           +  N  +++   R  E D  K   L+   V   TP N VV   I  G++   +       
Sbjct: 78  QDNNKGYVILSKR--EIDKRKAQDLIEDAVKNATPINGVVKEAIKGGFTVSIMGHSAFCP 135

Query: 581 -DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 637
              ++ +  +K     G EF Q  ++D + +  ++ ++  L    Q   +    S++   
Sbjct: 136 FSQIDISRGIKEADYIGKEF-QFKIIDRKGNKDIVVSRRVLQEETQNKVIEEYLSNLKEG 194

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            +V G V NI + G F++    L GF         +  +       G+  +  +L V+ E
Sbjct: 195 DIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKE 254

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             ++ L +KQ                LE             +  K+VE + +G +I+G+V
Sbjct: 255 KRKVDLGIKQ----------------LE-----------GDTWYKFVEEYHVGDIIKGEV 287

Query: 758 HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 811
                FG  V+  E      H     + +H       V+ G+ ++  ILD+   ER + L
Sbjct: 288 TTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTL 347

Query: 812 SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
            LK V               K      A +D  V  +V   V+ + +++ V  LP  N  
Sbjct: 348 GLKQV---------------KDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELP--NGL 390

Query: 872 IGYASVSDYN 881
            G   +SD++
Sbjct: 391 EGICDISDFD 400



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 143/325 (44%), Gaps = 52/325 (16%)

Query: 1094 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI---HEGDIVGGRISKILSGVG 1150
             VLS++KEK+ + L ++  +            D    F+   H GDI+ G ++ +     
Sbjct: 247  QVLSVDKEKRKVDLGIKQLE-----------GDTWYKFVEEYHVGDIIKGEVTTVKKF-- 293

Query: 1151 GLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
            G  V +   + G +H ++L  N  V++P        F  +     G +++CK+L+++   
Sbjct: 294  GAFVNVYEGVEGLIHVSDLSWNSHVNNP------NDFVKV-----GAYLECKILDMNVPE 342

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
            R    + L L+   D    +   D         K     +D +   +  G ++ +     
Sbjct: 343  R---KLTLGLKQVKDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNG-LEGICDISD 398

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F  ++  +       N+ D   E+ E E  I        +S++   +R++++ K +    
Sbjct: 399  FDWMNNTV-------NIKDYIKENEEVEMVI--------MSIDRDKQRIKLSYKHT---K 440

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
             S   + + ++ H G IV G +K +   G+ +++EN +L G  H+S++     + +E++ 
Sbjct: 441  ESPWRVFDKAHPH-GSIVNGTVKAIIDSGVIVSLEN-DLEGYMHISQIDLPKGETLESVL 498

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMK 1414
            + GE     + +V++ KRRISL  +
Sbjct: 499  KVGESYPFVVREVNQVKRRISLSRR 523


>gi|269218432|ref|ZP_06162286.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211543|gb|EEZ77883.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 486

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 184/409 (44%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IGS+  L    D +I     G  + G V KVD++  LL +       + ++   +
Sbjct: 12   VAINDIGSEEDLIAAVDATIKYFNDGDIIEGTVVKVDHDEVLLDVGYKTEGVIPSKELSI 71

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                 P E+ E      +G  V   VL   KE K  RL+L   +         I      
Sbjct: 72   KHDINPDEVVE------VGDQVEALVL--QKEDKEGRLLLSKKRAQYERAWSQIEE---- 119

Query: 1130 TFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
              + E D +V G + +++ G  GL++ IG   +      E++ +    P  G +      
Sbjct: 120  --VKEADGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGRE------ 169

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                     ++ K++E+ +      +V LS RS L+   S    +  T+           
Sbjct: 170  ---------IEAKIIELDKNRN---NVVLSRRSWLEETQSQARGEFLTN----------- 206

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G + ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 207  --LKKGQVRDGVISSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEV 263

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E+  
Sbjct: 264  LDVDMDRERVSLSLKAT-----QEDPWQTFARTHGIGQIVPGKVTKLVPFGAFVRVED-G 317

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL++ HVD  E + + GE V VK++ +D E+RRISL +K +
Sbjct: 318  IEGLVHISELAQRHVDLPEQVVKVGEDVFVKVIDIDLERRRISLSLKQA 366



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           +++K G V  G + ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   V
Sbjct: 205 TNLKKGQVRDGVISSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEV 263

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G
Sbjct: 264 LDVDMDRERVSLSLKATQEDPWQTFARTHGIGQ---IVPGKVTKLVPFGAFVRVEDGIEG 320

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 321 LVHISELAQRHVDLPEQVVKVGEDVFVKVIDIDLERRRISLSL 363



 Score = 47.4 bits (111), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G + K++     +      +G  P  EL +     P  +  VG  V+  ++  
Sbjct: 35  NDGDIIEGTVVKVDHDEVLLDVGYKTEGVIPSKELSIKHDINPDEVVEVGDQVEALVLQK 94

Query: 519 IPASRRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 573
                R+ LS     +    +++ E  + +   +V+G V  V    +++ +  +G+    
Sbjct: 95  EDKEGRLLLSKKRAQYERAWSQIEE--VKEADGVVTGTVIEVVKGGLILDIGLRGF---- 148

Query: 574 IPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-A 631
           +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  Q   +  
Sbjct: 149 LP----ASLVEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRSWLEETQSQARGEFL 204

Query: 632 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
           +++    V  G + +I+  G FV  LG + G    S+         S+   VGQ V   +
Sbjct: 205 TNLKKGQVRDGVISSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEV 263

Query: 692 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 751
           LDV+ +  R++LSLK +       +F + H                           IG 
Sbjct: 264 LDVDMDRERVSLSLK-ATQEDPWQTFARTHG--------------------------IGQ 296

Query: 752 VIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAE 806
           ++ GKV +   FG  V  E+  +    I+     H  L    V+ G  +   ++D+    
Sbjct: 297 IVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVKVGEDVFVKVIDIDLER 356

Query: 807 RLVDLSLK 814
           R + LSLK
Sbjct: 357 RRISLSLK 364



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 155/349 (44%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +++G V+ VD    ++      + + P   +S    + P +  +VG ++   VL  + 
Sbjct: 37  GDIIEGTVVKVDHDEVLLDVGYKTEGVIPSKELSIKHDINPDEVVEVGDQVEALVLQKED 96

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +   + +    EA D ++T G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLLLSKKRAQYERAWSQIEEVKEA-DGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      +K
Sbjct: 153 LVEMRRVRDLQP----YIGREIEAKIIELDKNRNNVVLSRRSWLEETQSQARGEFLTNLK 208

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GV+  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 209 KGQVRDGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVTVE 262

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    +V G V  ++  G FVR    +
Sbjct: 263 VLDVDMDRERVSLSLKATQEDPWQTF----ARTHGIGQIVPGKVTKLVPFGAFVRVEDGI 318

Query: 661 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+    +  DL  +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 319 EGLVHISELAQ-RHVDLPEQVVKVGEDVFVKVIDIDLERRRISLSLKQA 366


>gi|296140136|ref|YP_003647379.1| RNA binding S1 domain-containing protein [Tsukamurella paurometabola
            DSM 20162]
 gi|296028270|gb|ADG79040.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM 20162]
          Length = 499

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 177/391 (45%), Gaps = 58/391 (14%)

Query: 1031 FEECDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFH 1086
            F + D+  G  V G + KVD +  LL I       + ++   +    +PSE+       +
Sbjct: 33   FNDGDIVEGTIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEV------VN 86

Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
            +G AV   VL+  KE K  RL+L   +        + +   ++    + + V G + +++
Sbjct: 87   VGDAVEALVLT--KEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEAVKGTVIEVV 139

Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
             G  GL++ IG   +      E++ +    P  G +               ++ K++E+ 
Sbjct: 140  KG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE---------------IEAKIIELD 182

Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1266
            +      +V LS R+ L+   S   S+              +  L    + +G V ++ +
Sbjct: 183  KNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVN 226

Query: 1267 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
             G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK + 
Sbjct: 227  FGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQ 285

Query: 1327 SRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
                 Q      +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  
Sbjct: 286  EDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVP 339

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +   G+   VK++ +D E+RRISL +K +
Sbjct: 340  DQVVSVGDDAMVKVIDIDLERRRISLSLKQA 370



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 150/378 (39%), Gaps = 50/378 (13%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +PS + +VG  V+  +++     
Sbjct: 43  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDAVEALVLTKEDKE 102

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 154

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-IHPN 637
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  H +   
Sbjct: 155 ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKG 214

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            V  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 215 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 273

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 274 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 306

Query: 758 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 810
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 307 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLERRRIS 364

Query: 811 LSLKTVFIDRFREANSNR 828
           LSLK    D   E + ++
Sbjct: 365 LSLKQANEDYTEEFDPSK 382



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 163/405 (40%), Gaps = 48/405 (11%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F   D+  G +V+G ++ VD    ++      + + P   +S    V P +   VG  + 
Sbjct: 33  FNDGDIVEGTIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDAVE 92

Query: 426 FRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL  + K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G
Sbjct: 93  ALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--G 148

Query: 484 VQGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTR 535
           ++GF P S  E+      +P    ++G+ ++ +I+      +++  SRR  L       R
Sbjct: 149 LRGFLPASLVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVR 204

Query: 536 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 594
                 ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+ 
Sbjct: 205 SEFLHQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVT 258

Query: 595 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGC 652
            G E   ++L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G 
Sbjct: 259 VGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGA 314

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           FVR    + G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    
Sbjct: 315 FVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLERRRISLSLKQANEDY 374

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           T      E F    K  M  S   NG  +          +W+EGF
Sbjct: 375 T------EEF-DPSKYGMADSYDENGEYIFPEGFDPETNEWLEGF 412


>gi|163845717|ref|YP_001633761.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
            J-10-fl]
 gi|222523422|ref|YP_002567892.1| RNA binding S1 domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163667006|gb|ABY33372.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447301|gb|ACM51567.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 520

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 18/212 (8%)

Query: 1221 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1280
            S+  G  +T +S      D P K   +++DL P M ++G V ++   G F+ +    D  
Sbjct: 72   SASSGSEATGASFTPVSDDQPHKP-RRLKDLQPGMELEGKVTSIALYGVFVDIGVGRDGL 130

Query: 1281 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK----------------T 1324
            V +S +SD  +E+P +   IG  V   V S+EP ++R+ +T++                 
Sbjct: 131  VHISEMSDRRIETPSEVVQIGDTVKVWVKSIEPEARRISLTMRDPARAETPRRARQPQPQ 190

Query: 1325 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1384
                   + +   L+ L VGD+V G I     +G F  I      GL HVSEL+E  V+ 
Sbjct: 191  QQQPRRQEVDREKLAALRVGDVVEGVITGFAPFGAFADI-GVGKDGLIHVSELAEGRVEK 249

Query: 1385 IETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             E   + GE+ + KIL++D E  RISL ++ +
Sbjct: 250  PEDAVKVGERYQFKILEIDGEAARISLSLRRA 281


>gi|395242108|ref|ZP_10419107.1| 30S Ribosomal protein S1 [Lactobacillus pasteurii CRBIP 24.76]
 gi|394480469|emb|CCI85347.1| 30S Ribosomal protein S1 [Lactobacillus pasteurii CRBIP 24.76]
          Length = 402

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +V+G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDALKVGQDVKVKVIGIDDDR 258

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +++K ++     Q+     S LH GDI  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TSGLHEGDIFEGEVKSLTNFGAFVEVTD-GIQGLVHVS 313

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            E+S  HVD    + + G+ VKVK+L +D  ++RISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQSVKVKVLGIDPSEKRISLSIKAT 354



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 14/162 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G VV+GKV  + +FGA +   GGV  L  +  +S   + KP    KVG ++  +V+G+  
Sbjct: 198 GDVVEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDALKVGQDVKVKVIGIDD 256

Query: 434 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 487
            R  I+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATSGLHEGDIFEGEVKSLTNFGAFVEVTDGIQGL 309

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
              SE+      +PS +  VGQ VK +++   P+ +RI+LS 
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQSVKVKVLGIDPSEKRISLSI 351



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD+V G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFGKVASQLVVGDVVEGKVSRLTNFGA 213

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            FI +   +  GL H+SE+S  HVD      + G+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDALKVGQDVKVKVIGIDDDRHRISLSIKQT 268



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 34/200 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD+V G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVVEGKVSRLTNF--GAFIDVG-GVDGLVHISEISYKHVDKP--------SDALK---V 243

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++ +                  P    +    L   
Sbjct: 244  GQDVKVKVIGIDDD---RHRISLSIKQT-----------------EPSPFEQATSGLHEG 283

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             I +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL ++P 
Sbjct: 284  DIFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLGIDPS 343

Query: 1315 SKRVEVTLKTSDSRTASQSE 1334
             KR+ +++K +D   +S  +
Sbjct: 344  EKRISLSIKATDENASSNED 363



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 129/322 (40%), Gaps = 37/322 (11%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           E+VKPG+ FK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  ELVKPGETFKA---LVLRRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNPIEGTVT 120

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 523
              + G  V    G +GF P S +        SS Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SSRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 524 RINLSFMMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R+ LS         E+   K+      G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFGKVASQLVVGDVVEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            ++   +H       +K G +   +++ +D++   + LS K +  +  +Q     S +H 
Sbjct: 228 EIS--YKHVDKPSDALKVGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQA---TSGLHE 282

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             +  G V ++   G FV     + G    S+  +      S    VGQSV+  +L ++ 
Sbjct: 283 GDIFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLGIDP 342

Query: 697 ETGRITLSLK---QSCCSSTDA 715
              RI+LS+K   ++  S+ DA
Sbjct: 343 SEKRISLSIKATDENASSNEDA 364


>gi|258511670|ref|YP_003185104.1| RNA binding S1 domain-containing protein [Alicyclobacillus
            acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478396|gb|ACV58715.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius subsp.
            acidocaldarius DSM 446]
          Length = 385

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 168/391 (42%), Gaps = 56/391 (14%)

Query: 1030 LFEECDVSIGQRVTGYVYKVDNEWALLTISR----HLKAQLFILDSAYEPSELQEFQRRF 1085
            +  +  V  G  VTG V  VD+    + +      H+  Q         PS++       
Sbjct: 8    MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDV------V 61

Query: 1086 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1145
             +G  VT  VL ++ E   + L  R  +   +        + MQ  +  G+ +   I  +
Sbjct: 62   SVGSTVTAQVLKVDMESGHVTLSKRRAEQASA-------WERMQQLLESGEPIEVEIRDV 114

Query: 1146 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
            + G  GLV  +G   +               P S  D    + L  + +GQ ++ KV+E+
Sbjct: 115  VKG--GLVADVGVRAF--------------IPASLVDRHFVENLEQF-KGQKLRAKVIEV 157

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
                       LS R+ L+  S   +  L              E+L P  +++G V+ +T
Sbjct: 158  DPQKNKLI---LSRRAVLEEESEARARKL-------------FEELKPGDVIEGTVQRLT 201

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
              G F+ +    D  V +S LS  +V  P +    G  V  RVL V+P + R+ +++K +
Sbjct: 202  DFGAFVDVG-GADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAA 260

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
                  +           GD+V G ++RV  +G F+ +    L GL HVS++S +HVD  
Sbjct: 261  ----LPEPWETYAHEFQPGDVVQGVVRRVVDFGAFVEL-RPGLEGLVHVSQISNEHVDKP 315

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + + G++V V++L VD E++RISL M+ S
Sbjct: 316  SDVLQPGQEVTVRVLSVDPERKRISLSMRDS 346



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 12/251 (4%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G +T ++ HG  V   +G +G     EL   PG  PS +  VG  V  +++     S
Sbjct: 19  VVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTVTAQVLKVDMES 78

Query: 523 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
             + LS        + + + +L   G  +   +  V    +V  V  + +   ++   H 
Sbjct: 79  GHVTLSKRRAEQASAWERMQQLLESGEPIEVEIRDVVKGGLVADVGVRAFIPASLVDRHF 138

Query: 580 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNS 638
            ++LE     K   K       ++ +D + + L+LS +  L   ++         + P  
Sbjct: 139 VENLEQFKGQKLRAK-------VIEVDPQKNKLILSRRAVLEEESEARARKLFEELKPGD 191

Query: 639 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 698
           V+ G V  + + G FV  +G   G    S+         S+    G  V+  +L V+ E 
Sbjct: 192 VIEGTVQRLTDFGAFVD-VGGADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEA 250

Query: 699 GRITLSLKQSC 709
           GRI+LS+K + 
Sbjct: 251 GRISLSIKAAL 261



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 144/358 (40%), Gaps = 31/358 (8%)

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
           + T + V+ G VV G+V AVD  G  V  P G +       +S      P     VG+ +
Sbjct: 8   MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTV 67

Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVR 479
             +VL V  +   VT  K     + A  +S  E   +L+  G   ++E     K G    
Sbjct: 68  TAQVLKVDMESGHVTLSK-----RRAEQASAWERMQQLLESGEPIEVEIRDVVKGGLVAD 122

Query: 480 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
              GV+ F P S +  D     +     GQ ++ +++   P   ++ LS        SE 
Sbjct: 123 V--GVRAFIPASLV--DRHFVENLEQFKGQKLRAKVIEVDPQKNKLILSRRAVLEEESEA 178

Query: 540 DLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 592
              KL      G ++ G V  +T     V V   G + G +    L+  H+ H +    V
Sbjct: 179 RARKLFEELKPGDVIEGTVQRLTDFGAFVDV---GGADGLVHISELSFSHVNHPS---EV 232

Query: 593 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 651
           ++ G     ++L +D E+  + LS K +L    +     A    P  VV G V  +++ G
Sbjct: 233 VREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETY---AHEFQPGDVVQGVVRRVVDFG 289

Query: 652 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
            FV     L G    S+  +      S     GQ V   +L V+ E  RI+LS++ S 
Sbjct: 290 AFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSS 347



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 154/363 (42%), Gaps = 36/363 (9%)

Query: 96  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGID----VK 150
           L + L+   V+EG V+T  V +++DHG  +   LP  + G +    L+   G      V 
Sbjct: 5   LREMLTDAAVREGDVVTGEVTAVDDHGVTV--ALPHGYEGHISPQELSAVPGTHPSDVVS 62

Query: 151 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 210
            G  +   V  +D     V LS      +    +  +     LL  G  +   ++ +++ 
Sbjct: 63  VGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQQ-----LLESGEPIEVEIRDVVKG 117

Query: 211 GVM--LSFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 267
           G++  +    +   + VD   ++N         +  + +K+ A+++ VDP    + L+  
Sbjct: 118 GLVADVGVRAFIPASLVDRHFVENL--------EQFKGQKLRAKVIEVDPQKNKLILSRR 169

Query: 268 PYL-----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
             L        R     +K GD+ + +     D   G  +D+          V IS+++ 
Sbjct: 170 AVLEEESEARARKLFEELKPGDVIEGTVQRLTD--FGAFVDVGGAD----GLVHISELSF 223

Query: 323 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
             V    +  +EG  V+VR+L      G  +  +KA+  E       + +PG VV+G V 
Sbjct: 224 SHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVR 283

Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 440
            V  FGA V+   G++ L  +  +S   + KP    + G E+  RVL V  + KRI+++ 
Sbjct: 284 RVVDFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSM 343

Query: 441 KKT 443
           + +
Sbjct: 344 RDS 346


>gi|298346799|ref|YP_003719486.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
 gi|304389496|ref|ZP_07371459.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
 gi|298236860|gb|ADI67992.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
 gi|304327306|gb|EFL94541.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
          Length = 489

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 187/405 (46%), Gaps = 58/405 (14%)

Query: 1020 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1073
            + +++IGS + L +E D +I     G  V+G V KVD +  LL I    K +  IL    
Sbjct: 13   VAINDIGSTEDLIKEIDKTIKYFNDGDLVSGTVVKVDRDEVLLDIG--YKTEGVILSREL 70

Query: 1074 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1133
                  +      +G  +   VL   KE K  RL+L   +        DI     +    
Sbjct: 71   SIKHDVDPDAEVKVGDEIEALVL--QKEDKEGRLLLSKKRAQYERAWGDI-----EKVKQ 123

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            E  +V G + +++ G  GL++ IG   +      E++ +    P  G             
Sbjct: 124  EDGVVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLQPYIG------------- 168

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
              + ++ K++E+ +      +V LS R+ L+   S   ++ LST              L 
Sbjct: 169  --RQLETKIIELDKNRN---NVVLSRRAFLEQTQSEVRTTFLST--------------LQ 209

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
               + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+
Sbjct: 210  KGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVD 268

Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGL 1371
               +RV ++LK +      +      +  H +G IV G++ ++  +G+F+ +E+  + GL
Sbjct: 269  FDRERVSLSLKAT-----QEDPWQTFARTHKIGQIVPGKVTKLVPFGVFVRVED-GIEGL 322

Query: 1372 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             HVSEL+  HV+  E + + G+++ VK++ +D E+RRISL +K +
Sbjct: 323  VHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 367



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   V
Sbjct: 206 STLQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEV 264

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G
Sbjct: 265 LDVDFDRERVSLSLKATQEDPWQTFARTHKIGQ---IVPGKVTKLVPFGVFVRVEDGIEG 321

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL       P  +  +G  +  +++      RRI+LS 
Sbjct: 322 LVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSL 364



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 143/363 (39%), Gaps = 48/363 (13%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G + K+++    +      +G     EL +    +P +   VG  ++  ++      
Sbjct: 40  LVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKEDKE 99

Query: 523 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+   ++     
Sbjct: 100 GRLLLSKKRAQYERAWGDIEKVKQEDGVVTGTVIEVVKGGLIIDIGLRGFLPASLV---- 155

Query: 580 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNS 638
              +     ++  I    E  +++ LD   +N++LS +  L  +  ++ +   S +    
Sbjct: 156 --EMRRVRDLQPYIGRQLET-KIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQKGQ 212

Query: 639 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 698
           V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ + 
Sbjct: 213 VRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDR 271

Query: 699 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 758
            R++LSLK +       +F + H                           IG ++ GKV 
Sbjct: 272 ERVSLSLK-ATQEDPWQTFARTHK--------------------------IGQIVPGKVT 304

Query: 759 ESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDL 811
           +   FGV V  E+   + G +   +LA   VE        G  I   ++D+    R + L
Sbjct: 305 KLVPFGVFVRVEDG--IEGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISL 362

Query: 812 SLK 814
           SLK
Sbjct: 363 SLK 365



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + +     +S    V P  + KVG E+   VL  + 
Sbjct: 38  GDLVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKED 97

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLLLSKKRAQYERAWGDIEKVKQE-DGVVT-GTVIEVVKGGLIIDI--GLRGFLPAS 153

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQ 209

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGQEVTVE 263

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    +V G V  ++  G FVR    +
Sbjct: 264 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHKIGQIVPGKVTKLVPFGVFVRVEDGI 319

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   +G  +   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 367


>gi|375096179|ref|ZP_09742444.1| ribosomal protein S1 [Saccharomonospora marina XMU15]
 gi|374656912|gb|EHR51745.1| ribosomal protein S1 [Saccharomonospora marina XMU15]
          Length = 497

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 180/392 (45%), Gaps = 60/392 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G AV   
Sbjct: 43   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VAVGDAVEAL 96

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 97   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKDKDEPVSGTVIEVVKG--GLIL 147

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 148  DIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKNRN---N 189

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L+   + +G V ++ + G F+ L 
Sbjct: 190  VVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG 236

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q  
Sbjct: 237  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-- 293

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G 
Sbjct: 294  ---FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGT 349

Query: 1394 KVKVKILKVDKEKRRISLGMKSSY--FKNDAD 1423
            +V VK++ +D E+RRISL +K +   F +D+D
Sbjct: 350  EVMVKVIDIDLERRRISLSLKQANEGFTSDSD 381



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 145/362 (40%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 45  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKEDKE 104

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + ++L      VSG V  V    +++ +  +G+   ++     
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKDKDEPVSGTVIEVVKGGLILDIGLRGFLPASL----- 159

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 160 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKG 216

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 217 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 275

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 276 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 308

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  EE  +    I+     H ++    V+ G+ +   ++D+    R + LS
Sbjct: 309 TKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLS 368

Query: 813 LK 814
           LK
Sbjct: 369 LK 370



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKED 102

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKDKDEPV--SGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 717
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    ++D+ F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQANEGFTSDSDF 382


>gi|271964470|ref|YP_003338666.1| 30S ribosomal protein S1 [Streptosporangium roseum DSM 43021]
 gi|270507645|gb|ACZ85923.1| Ribosomal protein S1-like protein [Streptosporangium roseum DSM
            43021]
          Length = 500

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 191/408 (46%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS+  F    D++I     G  V G V KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEDFLAAIDLTIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+++ E      +G+ V   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPADVVE------VGEHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKDEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+    T S    T ++T         
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRQTFLNT--------- 208

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 209  -LQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 266

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ +E   +
Sbjct: 267  DVDMERERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGRVTKLVPFGAFVRVEE-GI 320

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HV+  E + + G+++ VKI+ +D E+RRISL +K +
Sbjct: 321  EGLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQA 368



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 154/356 (43%), Gaps = 29/356 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P    +VG  +   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPADVVEVGEHVEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKD-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D E   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMERERVSLSLKATQEDPWQQF---ARTHQIGQVVPGRVTKLVPFGAFVRVEEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 717
           G    S+  +       +   VG  +   I+D++ E  RI+LSLKQ+  S+T A  
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQANESATGADI 377


>gi|294786795|ref|ZP_06752049.1| ribosomal protein S1 [Parascardovia denticolens F0305]
 gi|315226424|ref|ZP_07868212.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
            12538]
 gi|420237201|ref|ZP_14741672.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
 gi|294485628|gb|EFG33262.1| ribosomal protein S1 [Parascardovia denticolens F0305]
 gi|315120556|gb|EFT83688.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
            12538]
 gi|391879472|gb|EIT87978.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
          Length = 493

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 172/384 (44%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V K+D++  LL I       + ++   +     P ++ E      +G  +   
Sbjct: 36   GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDVTPEDVVE------VGDTI--E 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1153
             L + KE K  RL+L   +        D+        I E D +V G + + + G  GL+
Sbjct: 88   ALVVTKEDKEGRLILSKKRAQYERAWGDVEK------IKEADGVVEGTVIEAVKG--GLI 139

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V IG   +      E++ +    P  G               Q ++ K+LE+ +      
Sbjct: 140  VDIGLRGFLPASLVEMRRVRDLAPYIG---------------QKIQAKILELDKNRN--- 181

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
            +V LS R  L+   S                   +  L    + +G + ++ + G F+ L
Sbjct: 182  NVVLSRREYLEETQSEVRETF-------------LSQLKKGQVREGTISSIVNFGAFVDL 228

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++LK +      + 
Sbjct: 229  G-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QED 282

Query: 1334 EINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
                 +  HV G IV G++ ++  +G+F+++++  + GL H+SEL+  HV+N ET+ + G
Sbjct: 283  PWQRFARTHVPGQIVRGKVTKIVQFGVFVSVDD-GIEGLIHISELANRHVENPETVVKPG 341

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            E + VK++ VD ++RRISL +K +
Sbjct: 342  ETIFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G V +G + ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQVREGTISSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +RI+++ K T          ++       I  G +TKI + G FV   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---IVRGKVTKIVQFGVFVSVDDGIEG 319

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL       P ++   G+ +  +++      RRI+LS 
Sbjct: 320 LIHISELANRHVENPETVVKPGETIFVKVIDVDLDRRRISLSL 362



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 146/374 (39%), Gaps = 44/374 (11%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +     P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDVTPEDVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 569
            ++  +++      R+ LS        +  D+ K+     GVV+     AV   +I    
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDVEKIKE-ADGVVEGTVIEAVKGGLIVDIG 143

Query: 570 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL- 627
            +G +P    A  +E   V       G +   ++L LD   +N++LS +  L  +  ++ 
Sbjct: 144 LRGFLP----ASLVEMRRVRDLAPYIGQKIQAKILELDKNRNNVVLSRREYLEETQSEVR 199

Query: 628 PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 687
            +  S +    V  G + +I+  G FV  LG + G    S+         S+   VG  V
Sbjct: 200 ETFLSQLKKGQVREGTISSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 688 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
              +LDV+ +  RI+LSLK +        F + H                          
Sbjct: 259 TVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH-------------------------- 291

Query: 748 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAIL 800
           + G ++ GKV +   FGV VS ++   + G I   +LA   VE+       G  I   ++
Sbjct: 292 VPGQIVRGKVTKIVQFGVFVSVDDG--IEGLIHISELANRHVENPETVVKPGETIFVKVI 349

Query: 801 DVAKAERLVDLSLK 814
           DV    R + LSLK
Sbjct: 350 DVDLDRRRISLSLK 363



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 152/355 (42%), Gaps = 29/355 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S  + V P    +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDVTPEDVVEVGDTIEALVVTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDVEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    +K
Sbjct: 152 LVEMRRVRDLAP----YIGQKIQAKILELDKNRNNVVLSRREYLEETQSEVRETFLSQLK 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  G +  +      V +   G   G I    L+  H++H +    V+K G +   +
Sbjct: 208 KGQVREGTISSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G FV     + 
Sbjct: 262 VLDVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVRGKVTKIVQFGVFVSVDDGIE 318

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
           G    S+  +    +       G+++   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 319 GLIHISELANRHVENPETVVKPGETIFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 40.4 bits (93), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  IV+G V  +   G F+ +   ++  + +S L++ +VE+PE     G+ +  +V+ V+
Sbjct: 293  PGQIVRGKVTKIVQFGVFVSVDDGIEGLIHISELANRHVENPETVVKPGETIFVKVIDVD 352

Query: 1313 PLSKRVEVTLKTSDSRTASQSE 1334
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|185535577|gb|ACC77867.1| 30S ribosomal protein S1 [Staphylococcus xylosus]
          Length = 393

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 145/293 (49%), Gaps = 50/293 (17%)

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
            DN QT       +  ++++++ G  GLVV +G    G V  + +    + D         
Sbjct: 106  DNNQT-------IEAKVTEVVKG--GLVVDVGQR--GFVPASLISTDFIED--------- 145

Query: 1186 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1245
                SG+ EGQ +K KV E+         V LS R +++ + +    D            
Sbjct: 146  ---FSGF-EGQILKLKVEELDPA---NNRVILS-RKAVEALENAEKKD------------ 185

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E +E L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    IG  V 
Sbjct: 186  ELLESLNEGDVIEGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVKSPEDVVAIGDSVK 244

Query: 1306 GRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
             ++ SV+  S+R+ +++K +      A + EIN       G+++ G + R+ ++G F+ I
Sbjct: 245  VKIKSVDKDSERISLSIKDTLPSPFEAIKGEINE------GEVIEGTVVRLTNFGAFVEI 298

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +   + GL H+SE+S  H+     + + GEKV VKIL VD E  RISL +K++
Sbjct: 299  Q-PGVQGLVHISEISHSHIGTPGEVLQPGEKVSVKILSVDPENERISLSIKAT 350



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 93/170 (54%), Gaps = 10/170 (5%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP--IGKLVAG 1306
            E L  N  ++  V  V   G  + + ++    V  S +S  ++E    +F    G+++  
Sbjct: 103  EQLDNNQTIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSGFEGQILKL 156

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +V  ++P + RV ++ K  ++   ++ +   L +L+ GD++ G++ R+ ++G F+ I   
Sbjct: 157  KVEELDPANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGV 216

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  GL HVSELS +HV + E +   G+ VKVKI  VDK+  RISL +K +
Sbjct: 217  D--GLVHVSELSHEHVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIKDT 264



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 108/248 (43%), Gaps = 18/248 (7%)

Query: 288 QSKVVRVDRGLGLLLDIPS---TPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR-IL 343
           ++KV  V +G GL++D+      P S  +   I D +  E + L+ K +E      R IL
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSGFEGQILKLKVEELDPANNRVIL 170

Query: 344 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 403
             + +E L     K    E L         G V++GKV  + +FGA V   GGV  L  +
Sbjct: 171 SRKAVEALENAEKKDELLESL-------NEGDVIEGKVARLTNFGAFVDI-GGVDGLVHV 222

Query: 404 PHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDR 461
             +S   +  P     +G  +  ++  V   S+RI+++ K TL     AI     E    
Sbjct: 223 SELSHEHVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIKDTLPSPFEAIKGEINEGE-- 280

Query: 462 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 521
            +  G + ++   G FV    GVQG    SE+       P  +   G+ V  +I+S  P 
Sbjct: 281 -VIEGTVVRLTNFGAFVEIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVKILSVDPE 339

Query: 522 SRRINLSF 529
           + RI+LS 
Sbjct: 340 NERISLSI 347



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 146/355 (41%), Gaps = 28/355 (7%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +++K G  V G+V  ++    IV   GG    + P+  +S   I  P    KVG E+   
Sbjct: 11  NEIKEGDKVTGEVQEIEEKQVIVHVNGGKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAY 70

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
           V  V+      T    L K +L    SY    ++L         +T++ K G  V    G
Sbjct: 71  VTKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV--G 128

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 538
            +GF P S +  D   E  S +  GQ++K ++    PA+ R+ LS   K     E     
Sbjct: 129 QRGFVPASLISTD-FIEDFSGFE-GQILKLKVEELDPANNRVILS--RKAVEALENAEKK 184

Query: 539 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
           D+L++    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 185 DELLESLNEGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVKSPEDVVAI 239

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
           G     ++  +D +S  + LS K +L +  + +  +   I+   V+ G V  +   G FV
Sbjct: 240 GDSVKVKIKSVDKDSERISLSIKDTLPSPFEAIKGE---INEGEVIEGTVVRLTNFGAFV 296

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
                + G    S+          +    G+ V   IL V+ E  RI+LS+K + 
Sbjct: 297 EIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVKILSVDPENERISLSIKATL 351



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 163/394 (41%), Gaps = 81/394 (20%)

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 159
           ++EG  +T  V+ IE+   I+H     F G +P + L+    +N    VK G  +   V 
Sbjct: 13  IKEGDKVTGEVQEIEEKQVIVHVNGGKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAYVT 72

Query: 160 -----------------RSIDRTRKVVYLSSDPD---TVSKCVTKDLKG-ISIDL----L 194
                            R ++  +   +L    D   T+   VT+ +KG + +D+     
Sbjct: 73  KVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDVGQRGF 132

Query: 195 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 254
           VP  ++ST             F+  F+G          F     K    +    N R++ 
Sbjct: 133 VPASLIST------------DFIEDFSG----------FEGQILKLKVEELDPANNRVIL 170

Query: 255 VDPTSRAVGLTLNPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 310
              + +AV    N      LL +      +  GD+  + KV R+    G  +DI      
Sbjct: 171 ---SRKAVEALENAEKKDELLES------LNEGDVI-EGKVARL-TNFGAFVDIGGVD-- 217

Query: 311 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLVFT 367
               V +S+++ E V+  E     G  V+V+I    +  E ++  I     S FE +   
Sbjct: 218 --GLVHVSELSHEHVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIKDTLPSPFEAI--- 272

Query: 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
             ++  G V++G V+ + +FGA V+   GV+ L  +  +S   I  PG+  + G ++  +
Sbjct: 273 KGEINEGEVIEGTVVRLTNFGAFVEIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVK 332

Query: 428 VLGV--KSKRITVTHKKTLVKSKLAILSSYAEAT 459
           +L V  +++RI+++ K TL      I+ S +E T
Sbjct: 333 ILSVDPENERISLSIKATLPDEN--IIESDSETT 364


>gi|23336678|ref|ZP_00121881.1| COG0539: Ribosomal protein S1 [Bifidobacterium longum DJO10A]
          Length = 484

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 181/403 (44%), Gaps = 66/403 (16%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1128 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKN---RNNVVLSRRQYLEETQSEVRETF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1408
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RR
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRR 357



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 6/119 (5%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN--LSNLHVGDIVIGQIKRVESY 1357
            IG+ +  ++L ++    R  V L        +QSE+    LS L  G I  G +  + ++
Sbjct: 165  IGQKIKAKILELD--KNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNF 222

Query: 1358 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            G F+ +   +  GL HVSELS  H+D+   + + G+KV V++L VD ++ RISL +K++
Sbjct: 223  GAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT 279



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 135/344 (39%), Gaps = 37/344 (10%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 569
            ++  +++      R+ LS        +  D+ K+     GVV+     AV   +I    
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKE-ADGVVEGTVIEAVKGGLIVDIG 143

Query: 570 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLP 628
            +G +P    A  +E   V       G +   ++L LD   +N++LS +  L  +  ++ 
Sbjct: 144 LRGFLP----ASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVR 199

Query: 629 SD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 687
               S +    +  G V +I+  G FV  LG + G    S+         S+   VG  V
Sbjct: 200 ETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 688 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
              +LDV+ +  RI+LSLK +        F + H                          
Sbjct: 259 TVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH-------------------------- 291

Query: 748 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 791
           + G +++GKV +   FGV +S E+   + G +   +LA   VE+
Sbjct: 292 VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVEN 333



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +RI+++ K T          ++       I  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---IVKGKVTKIVQFGVFISVEDGIEG 319

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
               SEL       P ++   G+ V  +++      RR
Sbjct: 320 LVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRR 357


>gi|294055034|ref|YP_003548692.1| 30S ribosomal protein S1 [Coraliomargarita akajimensis DSM 45221]
 gi|293614367|gb|ADE54522.1| ribosomal protein S1 [Coraliomargarita akajimensis DSM 45221]
          Length = 552

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 98/163 (60%), Gaps = 6/163 (3%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            V+G V+N+T+ G F+ L   +D  V +S++S    V  P +    G  V   VL V+  S
Sbjct: 362  VRGKVRNLTTYGAFVELEEGIDGMVHVSDMSWTRKVNHPSEVVKKGDEVDAIVLDVDADS 421

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ + +K        + E    ++  +GD+V G++ ++ SYG F+ ++N ++ GL H+S
Sbjct: 422  QRISLGMKQLAVDPWDEIE----THFKIGDMVKGKVSKITSYGAFVELDN-DIDGLVHIS 476

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
            ++SE+ V+ I+ +  +G +V  +++K+DK++RRI L +K++ +
Sbjct: 477  QISEERVEKIKDVLDSGAEVTARVIKIDKDERRIGLSIKAANY 519



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 193/470 (41%), Gaps = 82/470 (17%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRV--L 429
           G +++G+V +    G IV    GV +  P   +     ++P K     VG    F+V  +
Sbjct: 101 GSIIQGRVRSKVKGGLIVSI--GVDSFLPASQID----IQPPKNLDQYVGQTYDFKVVKI 154

Query: 430 GVKSKRITVTHKKTLVKSKL----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
            ++ K I V+ ++ + + ++    A+L        R    G +  I  +G FV   +G+ 
Sbjct: 155 NLERKNIVVSRRELIEEQRMEKRRALLEEVKPGDKR---RGQVKNITDYGAFVDL-DGLD 210

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVK 543
           G    +++       PS M   G+ ++  I+       R++L          E  ++   
Sbjct: 211 GLLHITDMSWGRIQHPSEMVKQGEEIEVVIIEIDRDRERVSLGLKQLADNPWERIEEKYP 270

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
           + S ++G V  + P    V  I +G        E L  H+   +  K + KPG    ++L
Sbjct: 271 ISSTITGKVVNLVPYGAFVE-IEEG-------VEGLV-HVTELSWTKRISKPG----EVL 317

Query: 604 VLDNESSNLLLS-----AKYSLINSAQQL---PSD-ASHIHP-NSVVHGYVCNIIETGCF 653
            +  E   ++L       K SL    +QL   P D A H +P  + V G V N+   G F
Sbjct: 318 RIGEEIQAVVLGIQKEEQKISL--GVRQLDANPWDMARHNYPVGARVRGKVRNLTTYGAF 375

Query: 654 VRFLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           V     + G    S     ++ +  S+    G  V + +LDV++++ RI+L +KQ     
Sbjct: 376 VELEEGIDGMVHVSDMSWTRKVNHPSEVVKKGDEVDAIVLDVDADSQRISLGMKQLAVDP 435

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 772
            D   ++ HF                          IG +++GKV +   +G  V  +  
Sbjct: 436 WDE--IETHFK-------------------------IGDMVKGKVSKITSYGAFVELD-- 466

Query: 773 SDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKT 815
           +D+ G +   Q++   VE       SG+ + A ++ + K ER + LS+K 
Sbjct: 467 NDIDGLVHISQISEERVEKIKDVLDSGAEVTARVIKIDKDERRIGLSIKA 516



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 87/168 (51%), Gaps = 7/168 (4%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +E++ P    +G VKN+T  G F+ L   LD  + ++++S G ++ P +    G+ +   
Sbjct: 181  LEEVKPGDKRRGQVKNITDYGAFVDLD-GLDGLLHITDMSWGRIQHPSEMVKQGEEIEVV 239

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            ++ ++   +RV + LK        + E        +   + G++  +  YG F+ IE   
Sbjct: 240  IIEIDRDRERVSLGLKQLADNPWERIE----EKYPISSTITGKVVNLVPYGAFVEIEE-G 294

Query: 1368 LVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + GL HV+ELS    +     + R GE+++  +L + KE+++ISLG++
Sbjct: 295  VEGLVHVTELSWTKRISKPGEVLRIGEEIQAVVLGIQKEEQKISLGVR 342


>gi|296269456|ref|YP_003652088.1| RNA binding S1 domain-containing protein [Thermobispora bispora DSM
            43833]
 gi|296092243|gb|ADG88195.1| RNA binding S1 domain protein [Thermobispora bispora DSM 43833]
          Length = 480

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 188/408 (46%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS+  F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPAEV------VKVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+    T S    T ++T         
Sbjct: 172  --------LEAKIIELDKN---RNNVVLSRRAWLE---QTQSEVRQTFLNT--------- 208

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 209  -LQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 266

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ +E   +
Sbjct: 267  DVDMERERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGRVTKLVPFGAFVRVEE-GI 320

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HV+  E + + G+++ VKI+ +D E+RRISL +K +
Sbjct: 321  EGLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQA 368



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 151/347 (43%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  KVG  +   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVKVGDHVEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D E   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMERERVSLSLKATQEDPWQQF---ARTHQIGQVVPGRVTKLVPFGAFVRVEEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   VG  +   I+D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQA 368


>gi|227875377|ref|ZP_03993518.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243]
 gi|269977367|ref|ZP_06184340.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1]
 gi|306818692|ref|ZP_07452414.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239]
 gi|307700853|ref|ZP_07637878.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16]
 gi|227843931|gb|EEJ54099.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243]
 gi|269934670|gb|EEZ91231.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1]
 gi|304648378|gb|EFM45681.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239]
 gi|307613848|gb|EFN93092.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16]
          Length = 489

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 187/406 (46%), Gaps = 60/406 (14%)

Query: 1020 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1073
            + +++IGS + L +E D +I     G  VTG V KVD +  LL I    K +  IL    
Sbjct: 12   VAINDIGSTEDLLKEIDKTIKYFNDGDLVTGTVVKVDRDEVLLDIG--YKTEGVILSREL 69

Query: 1074 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1133
                  +      +G  +   VL   KE K  RL+L   +        D+        I 
Sbjct: 70   SIKHDVDPDEEVKVGDEIEALVL--QKEDKEGRLLLSKKRAQYERAWGDVEK------IK 121

Query: 1134 EGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
            E D +V G + +++ G  GL++ IG   +      E++ +    P  G            
Sbjct: 122  EADGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG------------ 167

Query: 1193 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
               + ++ K++E+ +      +V LS R+ L+   S   ++ LST              L
Sbjct: 168  ---RQLETKIIELDKNRN---NVVLSRRAFLEQTQSEVRTTFLST--------------L 207

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
                +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V
Sbjct: 208  QKGQVRTGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDV 266

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVG 1370
            +   +RV ++LK +      +      +  H +G IV G++ ++  +G+F+ +E+  + G
Sbjct: 267  DFDRERVSLSLKAT-----QEDPWQTFARTHKIGQIVPGKVTKLVPFGVFVRVED-GIEG 320

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            L HVSEL+  H++  E + + G+++ VK++ +D E+RRISL +K +
Sbjct: 321  LVHVSELATRHIEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 366



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 110/258 (42%), Gaps = 18/258 (6%)

Query: 291 VVRVDRGLGLLLDIP---STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 347
           V+ V +G GL+LDI      P S      + D+A    R+LE K  E    R  ++  R 
Sbjct: 131 VIEVVKG-GLILDIGLRGFLPASLVEMRRVRDLAPYIGRQLETKIIELDKNRNNVVLSRR 189

Query: 348 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 407
                   L+ +  E      S ++ G V  G V ++ +FGA V   GGV  L  +  +S
Sbjct: 190 ------AFLEQTQSEVRTTFLSTLQKGQVRTGVVSSIVNFGAFVDL-GGVDGLVHVSELS 242

Query: 408 EFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITH 465
              I  P +  +VG E+   VL V    +R++++ K T          ++       I  
Sbjct: 243 WKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQTFARTHKIGQ---IVP 299

Query: 466 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 525
           G +TK+   G FVR  +G++G    SEL       P  +  +G  +  +++      RRI
Sbjct: 300 GKVTKLVPFGVFVRVEDGIEGLVHVSELATRHIEVPEQVAKIGDEIFVKVIDIDLERRRI 359

Query: 526 NLSFMM--KPTRVSEDDL 541
           +LS     +   VS DD 
Sbjct: 360 SLSLKQANEGVDVSSDDF 377



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + +     +S    V P ++ KVG E+   VL  + 
Sbjct: 37  GDLVTGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDEEVKVGDEIEALVLQKED 96

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    EA D ++T G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLLLSKKRAQYERAWGDVEKIKEA-DGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 153 LVEMRRVRDLAP----YIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQ 208

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 209 KGQVRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGQEVTVE 262

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    +V G V  ++  G FVR    +
Sbjct: 263 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHKIGQIVPGKVTKLVPFGVFVRVEDGI 318

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   +G  +   ++D++ E  RI+LSLKQ+
Sbjct: 319 EGLVHVSELATRHIEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 366



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 146/365 (40%), Gaps = 51/365 (13%)

Query: 462 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 521
           L+T G + K+++    +      +G     EL +    +P     VG  ++  ++     
Sbjct: 39  LVT-GTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDEEVKVGDEIEALVLQKEDK 97

Query: 522 SRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
             R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P   
Sbjct: 98  EGRLLLSKKRAQYERAWGDVEKIKEADGVVTGTVIEVVKGGLILDIGLRGF----LP--- 150

Query: 579 LADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHP 636
            A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ +   S +  
Sbjct: 151 -ASLVEMRRVRDLAPYIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQK 209

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ 
Sbjct: 210 GQVRTGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDF 268

Query: 697 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 756
           +  R++LSLK +       +F + H                           IG ++ GK
Sbjct: 269 DRERVSLSLK-ATQEDPWQTFARTH--------------------------KIGQIVPGK 301

Query: 757 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLV 809
           V +   FGV V  E+   + G +   +LA   +E        G  I   ++D+    R +
Sbjct: 302 VTKLVPFGVFVRVEDG--IEGLVHVSELATRHIEVPEQVAKIGDEIFVKVIDIDLERRRI 359

Query: 810 DLSLK 814
            LSLK
Sbjct: 360 SLSLK 364


>gi|284031037|ref|YP_003380968.1| RNA binding S1 domain-containing protein [Kribbella flavida DSM
            17836]
 gi|283810330|gb|ADB32169.1| RNA binding S1 domain protein [Kribbella flavida DSM 17836]
          Length = 492

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS+  F    D++I     G  V G + KVD +  LL I       + ++   +
Sbjct: 19   VAVNDIGSEEDFLAAIDLTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 78

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+       ++G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 79   KHDVDPNEV------VNVGDHVEALVL--QKEDKEGRLILSKKR-----AQYEKAWGTIE 125

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 126  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVG--------- 174

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S    +  T             
Sbjct: 175  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRMNFLTQ------------ 213

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 214  -LQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPTEVVEVGQEVTVEVL 271

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 272  DVDMDRERVSLSLKATQEDPWQQ-----FARTHQMGQIVPGKVTKLVPFGAFVRVEE-GI 325

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HV+  E + +  + V VKI+ +D E+RRISL +K +
Sbjct: 326  EGLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQA 373



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 44  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDHVEALVLQKED 103

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 104 KEGRLILSKKRAQYEKAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 159

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R++    ++
Sbjct: 160 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRMNFLTQLQ 215

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H T    V++ G E   +
Sbjct: 216 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPT---EVVEVGQEVTVE 269

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       +V G V  ++  G FVR    + 
Sbjct: 270 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQMGQIVPGKVTKLVPFGAFVRVEEGIE 326

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   V   V   I+D++ E  RI+LSLKQ+
Sbjct: 327 GLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQA 373


>gi|315655345|ref|ZP_07908245.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
 gi|315656742|ref|ZP_07909629.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
            35242]
 gi|315490285|gb|EFU79910.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
 gi|315492697|gb|EFU82301.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
            35242]
          Length = 489

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 187/405 (46%), Gaps = 58/405 (14%)

Query: 1020 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1073
            + +++IGS + L +E D +I     G  V+G V KVD +  LL I    K +  IL    
Sbjct: 13   VAINDIGSTEDLIKEIDKTIKYFNDGDLVSGTVVKVDRDEVLLDIG--YKTEGVILSREL 70

Query: 1074 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1133
                  +      +G  +   VL   KE K  RL+L   +        DI     +    
Sbjct: 71   SIKHDVDPDAEVKVGDEIEALVL--QKEDKEGRLLLSKKRAQYERAWGDI-----EKVKQ 123

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            E  +V G + +++ G  GL++ IG   +      E++ +    P  G             
Sbjct: 124  EDGVVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLQPYIG------------- 168

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
              + ++ K++E+ +      +V LS R+ L+   S   ++ LST              L 
Sbjct: 169  --RQLETKIIELDKNRN---NVVLSRRAFLEQTQSEVRTTFLST--------------LQ 209

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
               + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+
Sbjct: 210  KGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVD 268

Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGL 1371
               +RV ++LK +      +      +  H +G IV G++ ++  +G+F+ +E+  + GL
Sbjct: 269  FDRERVSLSLKAT-----QEDPWQTFARTHKIGQIVPGKVTKLVPFGVFVRVED-GIEGL 322

Query: 1372 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             HVSEL+  HV+  E + + G+++ VK++ +D E+RRISL +K +
Sbjct: 323  VHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 367



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   V
Sbjct: 206 STLQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEV 264

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G
Sbjct: 265 LDVDFDRERVSLSLKATQEDPWQTFARTHKIGQ---IVPGKVTKLVPFGVFVRVEDGIEG 321

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL       P  +  +G  +  +++      RRI+LS 
Sbjct: 322 LVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSL 364



 Score = 47.0 bits (110), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 143/363 (39%), Gaps = 48/363 (13%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G + K+++    +      +G     EL +    +P +   VG  ++  ++      
Sbjct: 40  LVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKEDKE 99

Query: 523 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+   ++     
Sbjct: 100 GRLLLSKKRAQYERAWGDIEKVKQEDGVVTGTVIEVVKGGLIIDIGLRGFLPASLV---- 155

Query: 580 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNS 638
              +     ++  I    E  +++ LD   +N++LS +  L  +  ++ +   S +    
Sbjct: 156 --EMRRVRDLQPYIGRQLET-KIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQKGQ 212

Query: 639 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 698
           V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ + 
Sbjct: 213 VRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDR 271

Query: 699 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 758
            R++LSLK +       +F + H                           IG ++ GKV 
Sbjct: 272 ERVSLSLK-ATQEDPWQTFARTHK--------------------------IGQIVPGKVT 304

Query: 759 ESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDL 811
           +   FGV V  E+   + G +   +LA   VE        G  I   ++D+    R + L
Sbjct: 305 KLVPFGVFVRVEDG--IEGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISL 362

Query: 812 SLK 814
           SLK
Sbjct: 363 SLK 365



 Score = 43.9 bits (102), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + +     +S    V P  + KVG E+   VL  + 
Sbjct: 38  GDLVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKED 97

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLLLSKKRAQYERAWGDIEKVKQE-DGVVT-GTVIEVVKGGLIIDI--GLRGFLPAS 153

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQ 209

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGQEVTVE 263

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    +V G V  ++  G FVR    +
Sbjct: 264 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHKIGQIVPGKVTKLVPFGVFVRVEDGI 319

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   +G  +   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 367


>gi|196231335|ref|ZP_03130194.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428]
 gi|196224671|gb|EDY19182.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428]
          Length = 566

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 98/163 (60%), Gaps = 6/163 (3%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            V+G V+N+T+ G F+ L   +D  + +S++S    V  P +    G  +   V+ ++  +
Sbjct: 364  VKGTVRNLTAYGAFVELEEGIDGMIHVSDMSWTKKVNHPSEVLKKGDEIEAVVIDIDKQN 423

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ + +K  +     + E    +   +GD+V G++ ++ ++G FI++E  ++ GL H+S
Sbjct: 424  QRISLGIKQLEGDPWKEIE----NKYKIGDLVKGKVSKITTFGAFISLEG-DIDGLIHIS 478

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
            ++SED VD I+   + G++V+ +++KVDK +RRI L +K++ +
Sbjct: 479  QISEDRVDKIKDHLKVGQEVEARVIKVDKTERRIGLSLKAANY 521



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 151/364 (41%), Gaps = 44/364 (12%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K G  VKG V  +  FGA +   G +  L  +  M+   +  P +  KVG EL   VL 
Sbjct: 186 IKVGSTVKGVVKNLTDFGAFIDLDG-MDGLLHITDMTWGRLGHPSELVKVGQELDVIVLD 244

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGV 484
           +  + +R+++  K+T         + + E  +R        G IT +  +G FV    GV
Sbjct: 245 INKEKERVSLGLKQTQ-------KNPWEETENRFPVGSKVKGKITNLVPYGAFVEIEEGV 297

Query: 485 QGFAPRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDL 541
           +G    SEL        PS +  VGQ V+  ++      ++I+L    ++P    E +  
Sbjct: 298 EGLIHVSELSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQKISLGVRQLEPNPWDEIEHR 357

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPG 596
            ++G  V G V  +T     V +      +G     H++D      + H +    V+K G
Sbjct: 358 YQIGRQVKGTVRNLTAYGAFVEL-----EEGIDGMIHVSDMSWTKKVNHPS---EVLKKG 409

Query: 597 YEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-----SVVHGYVCNIIET 650
            E + +++ +D ++  + L  K        QL  D      N      +V G V  I   
Sbjct: 410 DEIEAVVIDIDKQNQRISLGIK--------QLEGDPWKEIENKYKIGDLVKGKVSKITTF 461

Query: 651 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710
           G F+   G + G    S+  + +   +     VGQ V + ++ V+    RI LSLK +  
Sbjct: 462 GAFISLEGDIDGLIHISQISEDRVDKIKDHLKVGQEVEARVIKVDKTERRIGLSLKAANY 521

Query: 711 SSTD 714
           S  D
Sbjct: 522 SEED 525



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 7/159 (4%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            V+G VKN+T  G FI L   +D  + +++++ G +  P +   +G+ +   VL +    +
Sbjct: 192  VKGVVKNLTDFGAFIDLD-GMDGLLHITDMTWGRLGHPSELVKVGQELDVIVLDINKEKE 250

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
            RV + LK +      ++E    +   VG  V G+I  +  YG F+ IE   + GL HVSE
Sbjct: 251  RVSLGLKQTQKNPWEETE----NRFPVGSKVKGKITNLVPYGAFVEIEE-GVEGLIHVSE 305

Query: 1377 LS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            LS    +     +   G++V+  +L V+KE+++ISLG++
Sbjct: 306  LSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQKISLGVR 344



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 111/475 (23%), Positives = 190/475 (40%), Gaps = 77/475 (16%)

Query: 372 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
           K G +VKG++I V     +V    G K+   +  +SEF+        ++G E+   +L +
Sbjct: 20  KEGQIVKGRIIEVRPREVLVDI--GYKSEGAV-SLSEFD---DADDIQIGDEVEVLILRL 73

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEAT-----DRLITHGWITKIEKHGCFVRFYNGVQG 486
           +++  +V     L K K A   ++ +       D LI  G +  + K G  V    GV+ 
Sbjct: 74  ENEEGSVI----LSKEKAAYRQNWEKIVKVFQGDGLI-KGKVKAVVKGGLTVNI--GVEA 126

Query: 487 FAPRSELGLDPGCEPSSMYH-VGQVVKCRIMS------SIPASRRINLSFMMKPTRVSED 539
           F P S++ + P   P  +   VG     +I+       ++  SRR  +       R    
Sbjct: 127 FLPGSQIDIVP---PKDLQQFVGNTYDFKIVKINDDRKNVVLSRRELIEAERAEKRQRFM 183

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 599
           D +K+GS V GVV  +T      ++   G       T+     L H +    ++K G E 
Sbjct: 184 DTIKVGSTVKGVVKNLTDFG--AFIDLDGMDGLLHITDMTWGRLGHPS---ELVKVGQEL 238

Query: 600 DQLLVLD--NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 657
           D ++VLD   E   + L  K +  N  ++     +     S V G + N++  G FV   
Sbjct: 239 D-VIVLDINKEKERVSLGLKQTQKNPWEET---ENRFPVGSKVKGKITNLVPYGAFVEIE 294

Query: 658 GRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
             + G    S+    +R    S    VGQ V + +L VN E  +I+L ++Q   +  D  
Sbjct: 295 EGVEGLIHVSELSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQKISLGVRQLEPNPWDEI 354

Query: 717 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 776
              EH                         + IG  ++G V     +G  V  EE  D  
Sbjct: 355 ---EHR------------------------YQIGRQVKGTVRNLTAYGAFVELEEGID-- 385

Query: 777 GFITHHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
           G I    ++           ++ G  I+A ++D+ K  + + L +K +  D ++E
Sbjct: 386 GMIHVSDMSWTKKVNHPSEVLKKGDEIEAVVIDIDKQNQRISLGIKQLEGDPWKE 440


>gi|374709444|ref|ZP_09713878.1| 30S ribosomal protein S1 [Sporolactobacillus inulinus CASD]
          Length = 384

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 183/390 (46%), Gaps = 70/390 (17%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            +++G  V G V KV+ + AL+ +        + +D     SEL       H+ K     V
Sbjct: 15   LNVGTVVNGKVTKVEEKHALVDVG-------YKVDGILPISELS----SLHVEK-----V 58

Query: 1096 LSINKEKKLLRLVLRPFQDG---ISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSGVG 1150
              + KE   + + +   +D    +S + VD  ++ D+++   +        I+ ++ G  
Sbjct: 59   ADLLKEGDEISVKVTKLEDDELVLSKREVDADLAWDDLEDKFNNKTTFSVEIADVVKG-- 116

Query: 1151 GLVVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
            GLVV +G     P      HF E                     S Y +G+ +  K++E+
Sbjct: 117  GLVVDLGVRGFIPASLVERHFVE-------------------DFSDY-KGKPLDVKIVEL 156

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
             R  R      LS R+ LD ++               K  E +E +    +++G V+ +T
Sbjct: 157  DREKRKVI---LSHRAVLDEVADK-------------KKTETLESIQEGSVLEGTVQRLT 200

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
              G F+ +   +D  V +S L+  +VE+P +    G  V  +VL+V+P ++R+ +++K +
Sbjct: 201  DFGVFVDIG-GVDGLVHISQLAHYHVETPSEVVAEGDHVKVKVLAVDPENERISLSIKAT 259

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
                   ++    S ++VGD++ G +KR+  +G F+ +    + GL H+SE+S +H+   
Sbjct: 260  QPGPWETAK----SKINVGDVLEGTVKRLVPFGAFVEL-LPGVEGLVHISEISHEHIGTP 314

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            E +    +K+KVK+L V+ +++R+SL +K+
Sbjct: 315  EEVLTENQKIKVKVLDVNFDEQRVSLSIKA 344



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 66/116 (56%), Gaps = 2/116 (1%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
            GK +  +++ ++   ++V ++ +      A + +   L ++  G ++ G ++R+  +G+F
Sbjct: 146  GKPLDVKIVELDREKRKVILSHRAVLDEVADKKKTETLESIQEGSVLEGTVQRLTDFGVF 205

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + I   +  GL H+S+L+  HV+    +   G+ VKVK+L VD E  RISL +K++
Sbjct: 206  VDIGGVD--GLVHISQLAHYHVETPSEVVAEGDHVKVKVLAVDPENERISLSIKAT 259



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 25/342 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G VV GKV  V+   A+V     V  + P+  +S   + K     K G E+  +V  ++ 
Sbjct: 18  GTVVNGKVTKVEEKHALVDVGYKVDGILPISELSSLHVEKVADLLKEGDEISVKVTKLED 77

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
             + ++ ++  V + LA      +  ++      I  + K G  V    GV+GF P S L
Sbjct: 78  DELVLSKRE--VDADLAWDDLEDKFNNKTTFSVEIADVVKGGLVVDL--GVRGFIPAS-L 132

Query: 494 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED------DLVKLGSL 547
                 E  S Y  G+ +  +I+      R++ LS       V++       + ++ GS+
Sbjct: 133 VERHFVEDFSDYK-GKPLDVKIVELDREKRKVILSHRAVLDEVADKKKTETLESIQEGSV 191

Query: 548 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 606
           + G V  +T   V V +   G   G +    LA +  H      V+  G     ++L +D
Sbjct: 192 LEGTVQRLTDFGVFVDI---GGVDGLVHISQLAHY--HVETPSEVVAEGDHVKVKVLAVD 246

Query: 607 NESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 664
            E+  + LS     I + Q  P +   S I+   V+ G V  ++  G FV  L  + G  
Sbjct: 247 PENERISLS-----IKATQPGPWETAKSKINVGDVLEGTVKRLVPFGAFVELLPGVEGLV 301

Query: 665 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
             S+          +     Q ++  +LDVN +  R++LS+K
Sbjct: 302 HISEISHEHIGTPEEVLTENQKIKVKVLDVNFDEQRVSLSIK 343



 Score = 45.1 bits (105), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 18/171 (10%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           T   ++ G V++G V  +  FG  V   GGV  L  +  ++ + +  P +    G  +  
Sbjct: 182 TLESIQEGSVLEGTVQRLTDFGVFVDI-GGVDGLVHISQLAHYHVETPSEVVAEGDHVKV 240

Query: 427 RVLGV--KSKRITVTHKKT------LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 478
           +VL V  +++RI+++ K T        KSK+ +           +  G + ++   G FV
Sbjct: 241 KVLAVDPENERISLSIKATQPGPWETAKSKINVGD---------VLEGTVKRLVPFGAFV 291

Query: 479 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               GV+G    SE+  +    P  +    Q +K +++      +R++LS 
Sbjct: 292 ELLPGVEGLVHISEISHEHIGTPEEVLTENQKIKVKVLDVNFDEQRVSLSI 342


>gi|225164097|ref|ZP_03726379.1| ribosomal protein S1 [Diplosphaera colitermitum TAV2]
 gi|224801303|gb|EEG19617.1| ribosomal protein S1 [Diplosphaera colitermitum TAV2]
          Length = 555

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 107/182 (58%), Gaps = 10/182 (5%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            V G V+N+T+ G FI L   +D  V +S++S    V  P +    G  V   VL V+P  
Sbjct: 360  VHGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQ 419

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ + +K         S+I++     +GD+V G + ++ S+G F+ +++  + GL H+S
Sbjct: 420  QRISLGMKQL--AVDPWSDIDSF--FKIGDVVKGTVTKITSFGAFVDLKD-GIDGLVHIS 474

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
            ++SE+ ++ ++ + + G++V  +++K+D+++RR+ L +K++ +  +    Q++SE  + E
Sbjct: 475  QISEERIEKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAANYSPE----QLASETAAYE 530

Query: 1436 AI 1437
            A+
Sbjct: 531  AL 532



 Score = 70.5 bits (171), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 44/292 (15%)

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
            +N+ T   EG +  GR+   + G  GL++ IG   +               P S  D   
Sbjct: 90   ENILTKFPEGSVAVGRVKAKVKG--GLIISIGVDAFM--------------PASHID--- 130

Query: 1186 FDPLSGYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
              P    D+  GQ    KVL+I++  +   ++ LS R  ++   S    +L         
Sbjct: 131  IQPPKNLDQYVGQTYDFKVLKINQERK---NIVLSRRELIEQQRSEKRRNL--------- 178

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +E + P  + +G VKN+T  G FI L   +D  + ++++S G +  P +    G+ 
Sbjct: 179  ----LESIQPGQVRKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRIAHPSEMLKQGEE 233

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            +   ++ V    +RV + LK +      + E        VG  + G++  +  YG FI I
Sbjct: 234  IQVMIIEVNRDKERVSLGLKQTTKNPWDEIE----QKFPVGTKIHGKVVNLVPYGAFIEI 289

Query: 1364 ENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            E   + GL H++E+S    ++    + R G+++   +L + KE ++ISLG++
Sbjct: 290  E-PGVEGLVHITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLR 340



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 147/359 (40%), Gaps = 40/359 (11%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++PG V KG V  +  FGA +    G+  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 182 IQPGQVRKGVVKNITDFGAFIDL-DGMDGLLHITDMSWGRIAHPSEMLKQGEEIQVMIIE 240

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R+++  K+T       I   +   T     HG +  +  +G F+    GV+G  
Sbjct: 241 VNRDKERVSLGLKQTTKNPWDEIEQKFPVGTK---IHGKVVNLVPYGAFIEIEPGVEGLV 297

Query: 489 PRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK--- 543
             +E+       +PS M  VGQ +   ++      ++I+L    ++P      D+V+   
Sbjct: 298 HITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPNPW---DMVRHNY 354

Query: 544 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 597
            +G+ V G V  +T     + +      +G     H++D      + H +    V+K G 
Sbjct: 355 PIGARVHGKVRNMTTYGAFIEL-----EEGIDGMVHVSDMSWTRKVNHPS---EVLKKGD 406

Query: 598 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGC 652
           E D + VLD + S   +S         +QL  D      S      VV G V  I   G 
Sbjct: 407 EVDAI-VLDVDPSQQRISL------GMKQLAVDPWSDIDSFFKIGDVVKGTVTKITSFGA 459

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           FV     + G    S+  + +   +      GQ V + ++ ++ +  R+ LS+K +  S
Sbjct: 460 FVDLKDGIDGLVHISQISEERIEKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAANYS 518



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 123/567 (21%), Positives = 226/567 (39%), Gaps = 91/567 (16%)

Query: 451 ILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG-CEPSSMY 505
           +L+    A D+L    I  G IT+I ++   V      +G  P +E  +D G  +  S  
Sbjct: 4   LLAQEPAAFDKLKEGQIVSGVITEIRQNEVVVDIGGKSEGVIPANEF-IDIGELQIGSTI 62

Query: 506 HVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVV 562
            V  V K    + +P      LSF   +  +  E+ L K   GS+  G V       +++
Sbjct: 63  EV-YVEKLEDKNGLPV-----LSFDKAEQKKNWENILTKFPEGSVAVGRVKAKVKGGLII 116

Query: 563 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 622
            +    +    +P  H+   ++    +   +   Y+F ++L ++ E  N++LS +  LI 
Sbjct: 117 SIGVDAF----MPASHI--DIQPPKNLDQYVGQTYDF-KVLKINQERKNIVLS-RRELIE 168

Query: 623 S--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 680
              +++  +    I P  V  G V NI + G F+   G + G    +    G+ A  S+ 
Sbjct: 169 QQRSEKRRNLLESIQPGQVRKGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRIAHPSEM 227

Query: 681 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 740
              G+ ++  I++VN +  R++L LKQ+  +  D         +E+K             
Sbjct: 228 LKQGEEIQVMIIEVNRDKERVSLGLKQTTKNPWDE--------IEQK------------- 266

Query: 741 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA------GATVESGSV 794
                 F +G+ I GKV     +G  +  E   +    IT              +  G  
Sbjct: 267 ------FPVGTKIHGKVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRINKPSEMLRVGQE 320

Query: 795 IQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 854
           + A +L + K ++ + L L+ +  + +     N     +           VH  V  +  
Sbjct: 321 LDAVVLGIQKEDQKISLGLRQLEPNPWDMVRHNYPIGAR-----------VHGKVRNMT- 368

Query: 855 IVKENYLVLSLPEYNHSI-GYASVSDYN-TQKF--PQKQFLNGQSVIATVMALPSSSTAG 910
                    +  E    I G   VSD + T+K   P +    G  V A V+ +  S    
Sbjct: 369 ------TYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQQ-- 420

Query: 911 RLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
           R+ L +K ++    S        S + +G +V+  +T+I      +    G  G +HI++
Sbjct: 421 RISLGMKQLAVDPWSDI-----DSFFKIGDVVKGTVTKITSFGAFVDLKDGIDGLVHISQ 475

Query: 971 VNDDKSNVVENLFSNFKIGQTVTARII 997
           +++++   +E +    K GQ VTAR+I
Sbjct: 476 ISEER---IEKVKDVLKPGQEVTARVI 499



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 71/127 (55%), Gaps = 3/127 (2%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            +G+    +VL +    K + ++ +    +  S+   N L ++  G +  G +K +  +G 
Sbjct: 141  VGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLLESIQPGQVRKGVVKNITDFGA 200

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
            FI ++  +  GL H++++S   + +   + + GE+++V I++V+++K R+SLG+K +  K
Sbjct: 201  FIDLDGMD--GLLHITDMSWGRIAHPSEMLKQGEEIQVMIIEVNRDKERVSLGLKQTT-K 257

Query: 1420 NDADNLQ 1426
            N  D ++
Sbjct: 258  NPWDEIE 264



 Score = 48.1 bits (113), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 88/471 (18%), Positives = 182/471 (38%), Gaps = 61/471 (12%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K G +V G +  +     +V   G  + + P     +   ++ G   +V  E +    G
Sbjct: 15  LKEGQIVSGVITEIRQNEVVVDIGGKSEGVIPANEFIDIGELQIGSTIEVYVEKLEDKNG 74

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           +         +K   K+   IL+ + E +   +  G +    K G  +    GV  F P 
Sbjct: 75  LPVLSFDKAEQK---KNWENILTKFPEGS---VAVGRVKAKVKGGLIISI--GVDAFMPA 126

Query: 491 SELGLDPGCEPSSM-YHVGQVVKCRIMS------SIPASRRINLSFMMKPTRVSEDDLVK 543
           S + + P   P ++  +VGQ    +++       +I  SRR  +       R +  + ++
Sbjct: 127 SHIDIQP---PKNLDQYVGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLLESIQ 183

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
            G +  GVV  +T      ++   G       T+     + H + M   +K G E   ++
Sbjct: 184 PGQVRKGVVKNITDFGA--FIDLDGMDGLLHITDMSWGRIAHPSEM---LKQGEEIQVMI 238

Query: 604 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
           + ++ +   + L  K +  N   ++          + +HG V N++  G F+     + G
Sbjct: 239 IEVNRDKERVSLGLKQTTKNPWDEI---EQKFPVGTKIHGKVVNLVPYGAFIEIEPGVEG 295

Query: 663 FAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 721
               ++    +R +  S+   VGQ + + +L +  E  +I+L L+Q   +  D       
Sbjct: 296 LVHITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPNPWDMV----- 350

Query: 722 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 781
                        +HN         + IG+ + GKV     +G  +  EE  D    ++ 
Sbjct: 351 -------------RHN---------YPIGARVHGKVRNMTTYGAFIELEEGIDGMVHVSD 388

Query: 782 HQLA------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 826
                        ++ G  + A +LDV  +++ + L +K + +D + + +S
Sbjct: 389 MSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQQRISLGMKQLAVDPWSDIDS 439



 Score = 41.2 bits (95), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 156/385 (40%), Gaps = 39/385 (10%)

Query: 63  HVGQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 121
           +VGQ     VL+++ ++K I   R+  +  + S   + L LE++Q G V    VK+I D 
Sbjct: 140 YVGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNL-LESIQPGQVRKGVVKNITDF 198

Query: 122 GYILHF----GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 177
           G  +      GL   T  +    +A  S + +K G  +Q ++  ++R ++ V L      
Sbjct: 199 GAFIDLDGMDGLLHITD-MSWGRIAHPSEM-LKQGEEIQVMIIEVNRDKERVSLGL---- 252

Query: 178 VSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 236
             K  TK+     I+   P G  +  +V +++  G  +       G V I  +  T    
Sbjct: 253 --KQTTKN-PWDEIEQKFPVGTKIHGKVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRIN 309

Query: 237 NWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPP----SHVKVGDIYD 287
                    ++++A +L +    + + L L     NP+ +     P     H KV ++  
Sbjct: 310 KPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPNPWDMVRHNYPIGARVHGKVRNMTT 369

Query: 288 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGFR 346
               + ++ G+                V +SD++   +V    +  K+G  V   +L   
Sbjct: 370 YGAFIELEEGID-------------GMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVD 416

Query: 347 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 406
             +   +  +K  A +      S  K G VVKG V  + SFGA V    G+  L  +  +
Sbjct: 417 PSQQRISLGMKQLAVDPWSDIDSFFKIGDVVKGTVTKITSFGAFVDLKDGIDGLVHISQI 476

Query: 407 SEFEIVKPGKKFKVGAELVFRVLGV 431
           SE  I K     K G E+  RV+ +
Sbjct: 477 SEERIEKVKDVLKPGQEVTARVIKI 501


>gi|374856887|dbj|BAL59740.1| 30S ribosomal protein S1 [uncultured candidate division OP1
            bacterium]
          Length = 567

 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 189/451 (41%), Gaps = 69/451 (15%)

Query: 602  LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
            +L LD    NL++S +  L    +Q   +  S + P  V+ G + +I++ G FV  +G  
Sbjct: 167  ILELDRRERNLVVSHREYLKELERQKKEELFSKLQPGQVIEGTIKSIVDFGLFVD-IGGF 225

Query: 661  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
             G   RS+           TY VG  V   +L V+    RI+LS+KQ             
Sbjct: 226  EGLVHRSEISWKDIPVPPNTYKVGDKVTVKVLGVDRSKERISLSIKQ------------- 272

Query: 721  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 780
                +  I + Q              +  G+   G V    DFG  V  EE  DV G + 
Sbjct: 273  -LRPDPWIGLKQR-------------YPAGTKTTGTVVSLTDFGAFVRIEE--DVEGLVH 316

Query: 781  HHQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 833
              +L+          V+ G  ++  +LDV + ER V LS+K V  D + +         +
Sbjct: 317  ISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMKRVQPDPWEKI--------E 368

Query: 834  KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNG 893
            ++  E S    VH  V  + +        + L +   ++ + S   ++    P      G
Sbjct: 369  EKYPEGSI---VHGRVTKLADF----GAFVHLEDGVEALLHISEMSWDKVNKPSDVVTEG 421

Query: 894  QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLE 953
            Q + A V+   S ++  ++ L LK + E         K   SY VGS+V+  ITE+K   
Sbjct: 422  QEITAKVIK--SDASKRKIRLSLKELQE-----DPWHKFLESYSVGSIVEGPITELKDFG 474

Query: 954  LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1013
              +K      G IH++E+ D++     ++    ++GQTV ARII  + +    +  +  L
Sbjct: 475  AFMKITDDVEGLIHVSEITDERIATPADV---LQVGQTVKARIIGINEEKRQVRLSMRNL 531

Query: 1014 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1044
              +  ++T S+ G +       +++G+R+ G
Sbjct: 532  HKQEHLVTSSDAGHEA------ITMGERIKG 556



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 166/383 (43%), Gaps = 41/383 (10%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S ++PG V++G + ++  FG  V   GG + L     +S  +I  P   +KVG ++  +V
Sbjct: 198 SKLQPGQVIEGTIKSIVDFGLFVDI-GGFEGLVHRSEISWKDIPVPPNTYKVGDKVTVKV 256

Query: 429 LGV-KSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           LGV +SK RI+++ K+      + +   Y   T    T G +  +   G FVR    V+G
Sbjct: 257 LGVDRSKERISLSIKQLRPDPWIGLKQRYPAGTK---TTGTVVSLTDFGAFVRIEEDVEG 313

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-- 544
               SEL       P  +  VGQ V+  ++      RR++LS      RV  D   K+  
Sbjct: 314 LVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSM----KRVQPDPWEKIEE 369

Query: 545 ----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEF 599
               GS+V G V  +      V++       G     H+++   +       V+  G E 
Sbjct: 370 KYPEGSIVHGRVTKLADFGAFVHL-----EDGVEALLHISEMSWDKVNKPSDVVTEGQEI 424

Query: 600 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-----IHPNSVVHGYVCNIIETGCFV 654
              ++  +       ++K  +  S ++L  D  H         S+V G +  + + G F+
Sbjct: 425 TAKVIKSD-------ASKRKIRLSLKELQEDPWHKFLESYSVGSIVEGPITELKDFGAFM 477

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK-----QSC 709
           +    + G    S+  D + A  +    VGQ+V++ I+ +N E  ++ LS++     +  
Sbjct: 478 KITDDVEGLIHVSEITDERIATPADVLQVGQTVKARIIGINEEKRQVRLSMRNLHKQEHL 537

Query: 710 CSSTDASFMQEHFLLEEKIAMLQ 732
            +S+DA    E   + E+I  L+
Sbjct: 538 VTSSDAG--HEAITMGERIKGLK 558



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 178/431 (41%), Gaps = 45/431 (10%)

Query: 118 IEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 175
           ++D GY ++        FLP ++L E+    I+   G  +  ++  +DR  + + +S   
Sbjct: 124 VKDAGYHVNLLKSGIRAFLPGSHLGEDLTPNIEELRGKEVPFIILELDRRERNLVVSHR- 182

Query: 176 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 235
               K + +  K      L PG ++   ++SI++ G+ +  +  F G V    +      
Sbjct: 183 -EYLKELERQKKEELFSKLQPGQVIEGTIKSIVDFGLFVD-IGGFEGLVHRSEI------ 234

Query: 236 TNWK------NDYNQHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHVKVG 283
            +WK      N Y    KV  ++L VD +   + L++     +P++ L  R P      G
Sbjct: 235 -SWKDIPVPPNTYKVGDKVTVKVLGVDRSKERISLSIKQLRPDPWIGLKQRYPAGTKTTG 293

Query: 284 DIY---DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 340
            +    D    VR++  +  L+ I       P +         EV K+      G  V V
Sbjct: 294 TVVSLTDFGAFVRIEEDVEGLVHISELSWGYPEH-------PREVVKV------GQQVEV 340

Query: 341 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
            +L     E   +  +K    +           G +V G+V  +  FGA V    GV+AL
Sbjct: 341 VVLDVNEQERRVSLSMKRVQPDPWEKIEEKYPEGSIVHGRVTKLADFGAFVHLEDGVEAL 400

Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEA 458
             +  MS  ++ KP      G E+  +V+      ++I ++ K+         L SY+  
Sbjct: 401 LHISEMSWDKVNKPSDVVTEGQEITAKVIKSDASKRKIRLSLKELQEDPWHKFLESYSVG 460

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
           +   I  G IT+++  G F++  + V+G    SE+  +    P+ +  VGQ VK RI+  
Sbjct: 461 S---IVEGPITELKDFGAFMKITDDVEGLIHVSEITDERIATPADVLQVGQTVKARIIGI 517

Query: 519 IPASRRINLSF 529
               R++ LS 
Sbjct: 518 NEEKRQVRLSM 528



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 90/171 (52%), Gaps = 6/171 (3%)

Query: 1246 EKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
            EKIE+  P   IV G V  +   G F+ L   ++A + +S +S   V  P      G+ +
Sbjct: 365  EKIEEKYPEGSIVHGRVTKLADFGAFVHLEDGVEALLHISEMSWDKVNKPSDVVTEGQEI 424

Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
              +V+  +   +++ ++LK        +     L +  VG IV G I  ++ +G F+ I 
Sbjct: 425  TAKVIKSDASKRKIRLSLKELQEDPWHKF----LESYSVGSIVEGPITELKDFGAFMKIT 480

Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            + ++ GL HVSE++++ +     + + G+ VK +I+ +++EKR++ L M++
Sbjct: 481  D-DVEGLIHVSEITDERIATPADVLQVGQTVKARIIGINEEKRQVRLSMRN 530



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L P  +++G +K++   G F+ +    +  V  S +S   +  P   + +G  V  +VL 
Sbjct: 200  LQPGQVIEGTIKSIVDFGLFVDIG-GFEGLVHRSEISWKDIPVPPNTYKVGDKVTVKVLG 258

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
            V+   +R+ +++K    +      I        G    G +  +  +G F+ IE  ++ G
Sbjct: 259  VDRSKERISLSIK----QLRPDPWIGLKQRYPAGTKTTGTVVSLTDFGAFVRIEE-DVEG 313

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            L H+SELS  + ++   + + G++V+V +L V++++RR+SL MK
Sbjct: 314  LVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMK 357



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 100/443 (22%), Positives = 185/443 (41%), Gaps = 70/443 (15%)

Query: 396 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK---KTLVKSKLA 450
           G++A  P  H+ E   + P  +   G E+ F +L +  + + + V+H+   K L + K  
Sbjct: 137 GIRAFLPGSHLGED--LTPNIEELRGKEVPFIILELDRRERNLVVSHREYLKELERQKKE 194

Query: 451 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 510
            L S  +     +  G I  I   G FV    G +G   RSE+       P + Y VG  
Sbjct: 195 ELFSKLQPGQ--VIEGTIKSIVDFGLFVDI-GGFEGLVHRSEISWKDIPVPPNTYKVGDK 251

Query: 511 VKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAVVVY 563
           V  +++    +  RI+LS   ++P     D  + L      G+  +G V  +T     V 
Sbjct: 252 VTVKVLGVDRSKERISLSIKQLRP-----DPWIGLKQRYPAGTKTTGTVVSLTDFGAFVR 306

Query: 564 VIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSL 620
           +  +   +G +    L+  + EH    + V+K G +  +++VLD   +   + LS K   
Sbjct: 307 I--EEDVEGLVHISELSWGYPEHP---REVVKVGQQV-EVVVLDVNEQERRVSLSMKRVQ 360

Query: 621 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 680
            +  +++          S+VHG V  + + G FV     +      S+    +    S  
Sbjct: 361 PDPWEKIEEKYPE---GSIVHGRVTKLADFGAFVHLEDGVEALLHISEMSWDKVNKPSDV 417

Query: 681 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 740
              GQ + + ++  ++   +I LSLK+                       LQ    +   
Sbjct: 418 VTEGQEITAKVIKSDASKRKIRLSLKE-----------------------LQEDPWH--- 451

Query: 741 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF-----ITHHQLA--GATVESGS 793
            K++E + +GS++EG + E  DFG  +   +  DV G      IT  ++A     ++ G 
Sbjct: 452 -KFLESYSVGSIVEGPITELKDFGAFMKITD--DVEGLIHVSEITDERIATPADVLQVGQ 508

Query: 794 VIQAAILDVAKAERLVDLSLKTV 816
            ++A I+ + + +R V LS++ +
Sbjct: 509 TVKARIIGINEEKRQVRLSMRNL 531



 Score = 44.7 bits (104), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 99/468 (21%), Positives = 187/468 (39%), Gaps = 67/468 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE--IVKPGKKFKVGAELVFRVLGV 431
           G +++G+V+ V   G +V      +AL     ++ F    ++PG +     E++   +  
Sbjct: 30  GDILRGRVVQVSDQGVLVDIGYKSEALMKPTELAPFHKAPLQPGDEI----EVLITYIDE 85

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT-KIEKHGCFVRFY-NGVQGFAP 489
           +   I V+ K  L + +++ L        RL   G I  +++  G  V    +G++ F P
Sbjct: 86  EEGTIHVSEKAALYEKRISELERAYRH--RLPITGTIEDEVKDAGYHVNLLKSGIRAFLP 143

Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDL---VK 543
            S LG D    P+     G+ V   I+      R + +S   ++ +  R  +++L   ++
Sbjct: 144 GSHLGED--LTPNIEELRGKEVPFIILELDRRERNLVVSHREYLKELERQKKEELFSKLQ 201

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QL 602
            G ++ G +  +    + V +   G  +G +    ++   +   V  +  K G +   ++
Sbjct: 202 PGQVIEGTIKSIVDFGLFVDI---GGFEGLVHRSEIS--WKDIPVPPNTYKVGDKVTVKV 256

Query: 603 LVLDNESSNLLLSAKY----SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
           L +D     + LS K       I   Q+ P+        +   G V ++ + G FVR   
Sbjct: 257 LGVDRSKERISLSIKQLRPDPWIGLKQRYPA-------GTKTTGTVVSLTDFGAFVRIEE 309

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 718
            + G    S+   G      +   VGQ V   +LDVN +  R++LS+K+           
Sbjct: 310 DVEGLVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMKR----------- 358

Query: 719 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 778
                       +Q       E K+ E    GS++ G+V +  DFG  V  E+  +    
Sbjct: 359 ------------VQPDPWEKIEEKYPE----GSIVHGRVTKLADFGAFVHLEDGVEALLH 402

Query: 779 ITHHQL-----AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 821
           I+             V  G  I A ++    ++R + LSLK +  D +
Sbjct: 403 ISEMSWDKVNKPSDVVTEGQEITAKVIKSDASKRKIRLSLKELQEDPW 450



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 94/427 (22%), Positives = 177/427 (41%), Gaps = 57/427 (13%)

Query: 55  DNLLPTIFHV-GQLVSCIVLQLDDDKKEIGKRKIWLSLR-----LSLLYKGLSLETVQEG 108
           ++L P I  + G+ V  I+L+LD  ++E   R + +S R     L    K      +Q G
Sbjct: 149 EDLTPNIEELRGKEVPFIILELD--RRE---RNLVVSHREYLKELERQKKEELFSKLQPG 203

Query: 109 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-----VVRSID 163
            V+   +KSI D G  +  G   F G + R+ ++    I V P     G      V  +D
Sbjct: 204 QVIEGTIKSIVDFGLFVDIG--GFEGLVHRSEISWKD-IPVPPNTYKVGDKVTVKVLGVD 260

Query: 164 RTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENGVMLSFLTYFTG 222
           R+++ + LS       K +  D   I +    P G   +  V S+ + G  +       G
Sbjct: 261 RSKERISLS------IKQLRPD-PWIGLKQRYPAGTKTTGTVVSLTDFGAFVRIEEDVEG 313

Query: 223 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAP 276
            V I  L   +P  + +      ++V   +L V+   R V L++     +P+  +  + P
Sbjct: 314 LVHISELSWGYP-EHPREVVKVGQQVEVVVLDVNEQERRVSLSMKRVQPDPWEKIEEKYP 372

Query: 277 PS---HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 333
                H +V  + D    V ++ G+  LL              IS+++ ++V K      
Sbjct: 373 EGSIVHGRVTKLADFGAFVHLEDGVEALLH-------------ISEMSWDKVNKPSDVVT 419

Query: 334 EGSCVRVRIL---GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 390
           EG  +  +++     +    L+   L+   +   + ++S    G +V+G +  +  FGA 
Sbjct: 420 EGQEITAKVIKSDASKRKIRLSLKELQEDPWHKFLESYS---VGSIVEGPITELKDFGAF 476

Query: 391 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKL 449
           ++    V+ L  +  +++  I  P    +VG  +  R++G+ + KR      + L K + 
Sbjct: 477 MKITDDVEGLIHVSEITDERIATPADVLQVGQTVKARIIGINEEKRQVRLSMRNLHKQEH 536

Query: 450 AILSSYA 456
            + SS A
Sbjct: 537 LVTSSDA 543


>gi|339635169|ref|YP_004726810.1| 30S ribosomal protein S1P [Weissella koreensis KACC 15510]
 gi|420161165|ref|ZP_14667936.1| ribosomal protein S1 [Weissella koreensis KCTC 3621]
 gi|338854965|gb|AEJ24131.1| SSU ribosomal protein S1P [Weissella koreensis KACC 15510]
 gi|394745915|gb|EJF34733.1| ribosomal protein S1 [Weissella koreensis KCTC 3621]
          Length = 432

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 150/291 (51%), Gaps = 54/291 (18%)

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
            +E DIV   +++++ G  GLVV +   + G +  + ++N  V D            L+ Y
Sbjct: 111  NEDDIVEAPVTQVVKG--GLVVDVA-GVRGFIPASMIENRFVQD------------LNQY 155

Query: 1193 DEGQFVKCKVLEI----SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
             +GQ VK +++EI    SR +       LS ++ L    S              + L+++
Sbjct: 156  -KGQTVKAQIIEINVAESRLI-------LSRKAVLSAERS--------------EALKRV 193

Query: 1249 -EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
             E+L+   IV+G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +
Sbjct: 194  FEELTVGDIVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYERVSQPSDVLSVGEDVKVK 252

Query: 1308 VLSVEPLSKRVEVTLKTSDS---RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
            VL ++P  +R+ +++K +      +A+Q       N   G ++ G ++RV  +G F+ + 
Sbjct: 253  VLGLDPEKERISLSIKATQPGPWDSAAQ-------NAPEGTVLEGTVRRVVDFGAFVEV- 304

Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
               + GL HVS++S  HV+N   + +AG+KV+VK+L V+ E++R+SL +K+
Sbjct: 305  FPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPERQRLSLSIKA 355



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 114/248 (45%), Gaps = 17/248 (6%)

Query: 288 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 347
           ++ V +V +G GL++D+       PA    S +    V+ L  +YK G  V+ +I+    
Sbjct: 117 EAPVTQVVKG-GLVVDVAGVRGFIPA----SMIENRFVQDL-NQYK-GQTVKAQIIEINV 169

Query: 348 LEGL----ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 403
            E         +L A   E L     ++  G +V+GKV  + +FGA +   GGV  L  +
Sbjct: 170 AESRLILSRKAVLSAERSEALKRVFEELTVGDIVEGKVARMTNFGAFIDL-GGVDGLVHV 228

Query: 404 PHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDR 461
             +S   + +P     VG ++  +VLG+  + +RI+++ K T      +   +  E T  
Sbjct: 229 SEISYERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKATQPGPWDSAAQNAPEGT-- 286

Query: 462 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 521
            +  G + ++   G FV  + GV+G    S++       PS +   G  V+ +++   P 
Sbjct: 287 -VLEGTVRRVVDFGAFVEVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPE 345

Query: 522 SRRINLSF 529
            +R++LS 
Sbjct: 346 RQRLSLSI 353



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 145/372 (38%), Gaps = 66/372 (17%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQ----VVKCRIMSS------IPASRRINL--SFM 530
           GV+G  P  EL  D   + + +  VG     VVK  I S       I + R++    ++ 
Sbjct: 45  GVEGVIPARELTSDRDADVNDLVKVGDKIEAVVKMPITSEKEGYSWILSKRQLEARRAWE 104

Query: 531 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH--ATV 588
              ++ +EDD+V+     + V  VV    VV     +G+   ++        L       
Sbjct: 105 EIASKYNEDDIVE-----APVTQVVKGGLVVDVAGVRGFIPASMIENRFVQDLNQYKGQT 159

Query: 589 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNI 647
           +K+         Q++ ++   S L+LS K  L    ++ L      +    +V G V  +
Sbjct: 160 VKA---------QIIEINVAESRLILSRKAVLSAERSEALKRVFEELTVGDIVEGKVARM 210

Query: 648 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
              G F+  LG + G    S+    + +  S    VG+ V+  +L ++ E  RI+LS+K 
Sbjct: 211 TNFGAFID-LGGVDGLVHVSEISYERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKA 269

Query: 708 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 767
           +     D                  S+  N  E         G+V+EG V    DFG  V
Sbjct: 270 TQPGPWD------------------SAAQNAPE---------GTVLEGTVRRVVDFGAFV 302

Query: 768 SFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDR 820
             E    V G +   Q++   VE       +G  +Q  +LDV    + + LS+K +    
Sbjct: 303 --EVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPERQRLSLSIKALTEAP 360

Query: 821 FREANSNRQAQK 832
            RE   N   ++
Sbjct: 361 AREGGDNNDGEQ 372



 Score = 49.3 bits (116), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 152/362 (41%), Gaps = 43/362 (11%)

Query: 367 THSDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
              DVK G VV G+V+ +D +   +V   G GV+ + P   ++           KVG ++
Sbjct: 14  AQPDVKVGDVVTGEVLTIDDAHQVVVGIDGAGVEGVIPARELTSDRDADVNDLVKVGDKI 73

Query: 425 VFRVLGVKSKRITVTHKK-----TLVKSKLAILSSYAEATDRL----ITHGWITKIEKHG 475
              V      ++ +T +K      L K +L    ++ E   +     I    +T++ K G
Sbjct: 74  EAVV------KMPITSEKEGYSWILSKRQLEARRAWEEIASKYNEDDIVEAPVTQVVKGG 127

Query: 476 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSF 529
             V    GV+GF P S +  +   +  + Y  GQ VK +I+      S +  SR+  LS 
Sbjct: 128 LVVDVA-GVRGFIPASMIE-NRFVQDLNQYK-GQTVKAQIIEINVAESRLILSRKAVLSA 184

Query: 530 MMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 587
                  RV E+  + +G +V G V  +T     + +   G   G +    ++   E  +
Sbjct: 185 ERSEALKRVFEE--LTVGDIVEGKVARMTNFGAFIDL---GGVDGLVHVSEIS--YERVS 237

Query: 588 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYV 644
               V+  G +   ++L LD E   + LS     I + Q  P D  A +    +V+ G V
Sbjct: 238 QPSDVLSVGEDVKVKVLGLDPEKERISLS-----IKATQPGPWDSAAQNAPEGTVLEGTV 292

Query: 645 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
             +++ G FV     + G    S+       + S     G  V+  +LDVN E  R++LS
Sbjct: 293 RRVVDFGAFVEVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPERQRLSLS 352

Query: 705 LK 706
           +K
Sbjct: 353 IK 354


>gi|452909695|ref|ZP_21958379.1| SSU ribosomal protein S1p [Kocuria palustris PEL]
 gi|452835067|gb|EME37864.1| SSU ribosomal protein S1p [Kocuria palustris PEL]
          Length = 498

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 192/430 (44%), Gaps = 70/430 (16%)

Query: 1013 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1066
            ++     + V++IG++  F    D +I     G  V G V KVD +  LL I    +  +
Sbjct: 1    MTTTTPQVAVNDIGTEEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVI 60

Query: 1067 FILDSAYEPSELQEFQRRFH------IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1120
                    PS     +   +      +G  +   VL+  KE K  RL+L   +       
Sbjct: 61   --------PSRELSIKHDINPDSVVAVGDEIEALVLT--KEDKEGRLILSKKRAQYERAW 110

Query: 1121 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1180
             DI     +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G
Sbjct: 111  GDI-----EKIKEEDGVVNGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG 163

Query: 1181 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1240
                           Q ++ K++E+ +      +V LS R+ L+   S   SD       
Sbjct: 164  ---------------QQLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSDF------ 199

Query: 1241 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1300
                   +  L    +  G+V ++ + G F+ L   +D  V +S LS  +++ P +   +
Sbjct: 200  -------LNKLQKGQVRTGHVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPGEVVEV 251

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYG 1358
            G+ V   VL V+   +RV ++LK      A+Q +   L +  H +G +V G++ ++  +G
Sbjct: 252  GQEVKVEVLDVDMDRERVSLSLK------ATQEDPWQLFARTHALGQVVPGKVTKLVPFG 305

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
             F+ +E+  + GL H+SEL++ HVD  E +   GE++ VK++ +D ++RRISL +K +  
Sbjct: 306  AFVRVED-GIEGLVHISELAQRHVDMAEQVVSVGEELFVKVIDIDLDRRRISLSLKQANE 364

Query: 1419 KNDADNLQMS 1428
              D D+ +  
Sbjct: 365  GVDPDSTEFD 374



 Score = 45.4 bits (106), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 124/281 (44%), Gaps = 34/281 (12%)

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL- 602
           G LV G V  V  + V++ +   GY ++G IP+  L+  ++H     SV+  G E + L 
Sbjct: 33  GDLVEGTVVKVDRDEVLLDI---GYKTEGVIPSRELS--IKHDINPDSVVAVGDEIEALV 87

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLT 661
           L  +++   L+LS K +    A     D   I   + VV+G V  +++ G  +     L 
Sbjct: 88  LTKEDKEGRLILSKKRAQYERAW---GDIEKIKEEDGVVNGTVIEVVKGGLILDI--GLR 142

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 721
           GF P S     +  DL+   Y+GQ + + I++++     + LS +++    T  S ++  
Sbjct: 143 GFLPASLVEMRRVRDLAP--YIGQQLEAKIIELDKNRNNVVLS-RRAWLEQT-QSEVRSD 198

Query: 722 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 781
           FL   K+   Q    + S +     F+    ++G VH S      +S++          H
Sbjct: 199 FL--NKLQKGQVRTGHVSSIVNFGAFVDLGGVDGLVHVSE-----LSWK----------H 241

Query: 782 HQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
               G  VE G  ++  +LDV      V LSLK    D ++
Sbjct: 242 IDHPGEVVEVGQEVKVEVLDVDMDRERVSLSLKATQEDPWQ 282



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 145/348 (41%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    + P     VG E+   VL  + 
Sbjct: 33  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDINPDSVVAVGDEIEALVLTKED 92

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E     + +G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKIKEEDG--VVNGTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSDFLNKLQ 204

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + +G V  +      V +   G   G +    L+  H++H      V++ G E   +
Sbjct: 205 KGQVRTGHVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVEVGQEVKVE 258

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 259 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 314

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VG+ +   ++D++ +  RI+LSLKQ+
Sbjct: 315 EGLVHISELAQRHVDMAEQVVSVGEELFVKVIDIDLDRRRISLSLKQA 362


>gi|229820681|ref|YP_002882207.1| 30S ribosomal protein S1 [Beutenbergia cavernae DSM 12333]
 gi|229566594|gb|ACQ80445.1| RNA binding S1 domain protein [Beutenbergia cavernae DSM 12333]
          Length = 488

 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 173/380 (45%), Gaps = 52/380 (13%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
            G  V G + KVD +  LL I    K +  IL          + +    +G+ V   VL  
Sbjct: 39   GDIVEGTIVKVDRDEVLLDIG--YKTEGVILSRELSIKHDVDPEEVVSVGERVEALVL-- 94

Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
             KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++ IG 
Sbjct: 95   QKEDKEGRLLLSKKR-----AQYERAWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGL 147

Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
              +      E++ +    P  G +               ++ K++E+ +      +V LS
Sbjct: 148  RGFLPASLVEMRRVRDLQPYVGKE---------------LEAKIIELDKNRN---NVVLS 189

Query: 1219 LRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
             R+ L+   S   S+ L+T              L    I  G V ++ + G F+ L   +
Sbjct: 190  RRAWLEQTQSEVRSTFLAT--------------LQKGQIRNGVVSSIVNFGAFVDLG-GV 234

Query: 1278 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1337
            D  V +S LS  +++ P +   +G+ V   VL VE   +RV ++LK +      Q     
Sbjct: 235  DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVELDRERVSLSLKATQEDPWQQ----- 289

Query: 1338 LSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
             +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+  HV+  E + + GE+V 
Sbjct: 290  FARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAVRHVEVPEQVAKVGEEVF 348

Query: 1397 VKILKVDKEKRRISLGMKSS 1416
            VK++ +D E+RRISL +K +
Sbjct: 349  VKVIDIDLERRRISLSLKQA 368



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G +  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LQKGQIRNGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 267

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V+   +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VELDRERVSLSLKATQEDPWQQFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +     P  +  VG+ V  +++      RRI+LS 
Sbjct: 325 HISELAVRHVEVPEQVAKVGEEVFVKVIDIDLERRRISLSL 365



 Score = 43.9 bits (102), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 144/367 (39%), Gaps = 50/367 (13%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  I  G I K+++    +      +G     EL +    +P  +  VG+ V+  ++   
Sbjct: 38  DGDIVEGTIVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPEEVVSVGERVEALVLQKE 97

Query: 520 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS        +   + K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLLLSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 634
              A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLATL 209

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
               + +G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV
Sbjct: 210 QKGQIRNGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDV 268

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 754
             +  R++LSLK +        F + H                           IG V+ 
Sbjct: 269 ELDRERVSLSLK-ATQEDPWQQFARTH--------------------------AIGQVVP 301

Query: 755 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAER 807
           GKV +   FG  V  E+   + G +   +LA   VE        G  +   ++D+    R
Sbjct: 302 GKVTKLVPFGAFVRVEDG--IEGLVHISELAVRHVEVPEQVAKVGEEVFVKVIDIDLERR 359

Query: 808 LVDLSLK 814
            + LSLK
Sbjct: 360 RISLSLK 366



 Score = 40.8 bits (94), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + +     +S    V P +   VG  +   VL  + 
Sbjct: 39  GDIVEGTIVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPEEVVSVGERVEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLLLSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLATLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQIRNGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L ++ +   + LS K +  +  QQ     +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLDVELDRERVSLSLKATQEDPWQQF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVEVPEQVAKVGEEVFVKVIDIDLERRRISLSLKQA 368


>gi|336119735|ref|YP_004574512.1| 30S ribosomal protein S1 [Microlunatus phosphovorus NM-1]
 gi|334687524|dbj|BAK37109.1| 30S ribosomal protein S1 [Microlunatus phosphovorus NM-1]
          Length = 488

 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 182/417 (43%), Gaps = 64/417 (15%)

Query: 1017 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1066
            P  + + ++GS   F    D +I     G  VTG V KVD +  LL I       + ++ 
Sbjct: 8    PPQVAIDDLGSPEAFLAAIDATIKYFNDGDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKE 67

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              +    +P E+        +G  +    L   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPFEV------VSVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWG 114

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G      
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVG------ 166

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                     Q ++ K++E+ +      +V LS R+ L+   S    +  T          
Sbjct: 167  ---------QELEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNFLTQ--------- 205

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
                L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 206  ----LQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E 
Sbjct: 261  EVLDVDMDRERVSLSLKAT-----QEDPWQAFARTHQIGQIVPGKVTKLVPFGAFVRVEE 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
              + GL HVSEL+E HV+  E +    + V VKI+ +D E+RRISL +K +    DA
Sbjct: 316  -GIEGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLERRRISLSLKQANEGVDA 371



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 149/349 (42%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 36  GDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVSVGDEIEALVQQKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGQELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLTQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 262 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHQIGQIVPGKVTKLVPFGAFVRVEEG 316

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+  +       +   V   V   I+D++ E  RI+LSLKQ+
Sbjct: 317 IEGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLERRRISLSLKQA 365


>gi|377574946|ref|ZP_09803956.1| 30S ribosomal protein S1 [Mobilicoccus pelagius NBRC 104925]
 gi|377536455|dbj|GAB49121.1| 30S ribosomal protein S1 [Mobilicoccus pelagius NBRC 104925]
          Length = 485

 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 191/415 (46%), Gaps = 64/415 (15%)

Query: 1013 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1062
            +++    + +++IGS+  L    D +I     G  V G + KVD +  LL I       +
Sbjct: 1    MTVSHPEIAINDIGSEEDLLAAIDATIKHFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVI 60

Query: 1063 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1122
             ++   +    +P+E+        +G       L + KE K  RL+L   +        +
Sbjct: 61   PSRELSIKHDVDPNEV--------VGVGDEVEALVLQKEDKEGRLILSKKR-----AQYE 107

Query: 1123 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1182
             +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +
Sbjct: 108  RAWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE 165

Query: 1183 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1242
                           ++ K++E+ +      +V LS R+ L+   S   ++         
Sbjct: 166  ---------------IEAKIIELDKN---RNNVVLSRRAWLEQTQSEVRTNF-------- 199

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
                 +++L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+
Sbjct: 200  -----LQELGKGQVRTGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQ 253

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFI 1361
             V   VL V+   +RV ++LK +      +    + +  H +G +V G++ ++  +G F+
Sbjct: 254  EVKVEVLDVDMDRERVSLSLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFV 308

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             +++  + GL H+SEL+E HV+  E + + G+++ VK++ +D E+RRISL +K +
Sbjct: 309  RVDD-GIEGLVHISELAERHVELPEQVVQVGQEIFVKVIDIDLERRRISLSLKQA 362



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 152/352 (43%), Gaps = 31/352 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 33  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVGVGDEVEALVLQKED 92

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    + 
Sbjct: 149 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQELG 204

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVKVE 258

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 259 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAFVRVDDGI 314

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
            G    S+  +       +   VGQ +   ++D++ E  RI+LSLKQ+   S
Sbjct: 315 EGLVHISELAERHVELPEQVVQVGQEIFVKVIDIDLERRRISLSLKQANDPS 366



 Score = 44.7 bits (104), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 136/306 (44%), Gaps = 48/306 (15%)

Query: 1040 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1090
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 107  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 165

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
            +   ++ ++K +  + L  R +     ++T      N    + +G +  G +S I++   
Sbjct: 166  IEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRTNFLQELGKGQVRTGVVSSIVNF-- 219

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
            G  V +G  + G VH +EL    +  P    + GQ            VK +VL++     
Sbjct: 220  GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVEVGQE-----------VKVEVLDVDMDRE 267

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
                V LSL+++ +                P +H  +   +    +V G V  +   G F
Sbjct: 268  ---RVSLSLKATQE---------------DPWQHFARTHAI--GQVVPGKVTKLVPFGAF 307

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            + +   ++  V +S L++ +VE PE+   +G+ +  +V+ ++   +R+ ++LK ++  + 
Sbjct: 308  VRVDDGIEGLVHISELAERHVELPEQVVQVGQEIFVKVIDIDLERRRISLSLKQANDPSV 367

Query: 1331 SQSEIN 1336
            + +E +
Sbjct: 368  ATTEFD 373


>gi|145295496|ref|YP_001138317.1| 30S ribosomal protein S1 [Corynebacterium glutamicum R]
 gi|140845416|dbj|BAF54415.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 486

 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 187/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNL--SNLHVGDIVIGQIKRVESYGLFITIENTN 1367
             V+   +RV ++LK      A+Q +   +   N  VG IV G++ ++  +G F+ +E   
Sbjct: 262  DVDLDRERVSLSLK------ATQEDPWRVFARNHAVGQIVPGKVTKLVPFGAFVRVEE-G 314

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL++ HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 315  IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARNHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    A +     +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARNHAVGQIVPGKVTKLVPFGAFVR 310

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 405


>gi|410667902|ref|YP_006920273.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Thermacetogenium
            phaeum DSM 12270]
 gi|409105649|gb|AFV11774.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH
            [Thermacetogenium phaeum DSM 12270]
          Length = 708

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 10/203 (4%)

Query: 1243 KHLEK----IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1298
            +HLE      E + P+ I +G V+++T+ G F+ L   +D  + +S LS G V+ P    
Sbjct: 497  EHLEAQRRLWETIEPDQIRKGTVRHLTNFGAFVDLG-GVDGLLHISELSWGRVKHPSDVV 555

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
              G  +   VLSV+   KR+ ++LK          +        VG+IV G + R+ S+G
Sbjct: 556  QEGDEIEVYVLSVDKERKRISLSLKQVQGNPWDTVD----ERYQVGEIVTGTVVRLVSFG 611

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
             F+ +E   + GL H+S +++ HV+  E I   GE+++VKIL ++K+ +RISL +K +  
Sbjct: 612  AFVELE-PGVEGLVHISRMADYHVEKPEDIVAVGEQIQVKILDINKQDQRISLSIKDARS 670

Query: 1419 KNDADNLQMSSEEESDEAIEEVG 1441
              +        EE+S  A   VG
Sbjct: 671  DKNEPRGNTQEEEKSQPASAGVG 693



 Score = 40.4 bits (93), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
           G +V G V+ + SFGA V+   GV+ L  +  M+++ + KP     VG ++  ++L +  
Sbjct: 597 GEIVTGTVVRLVSFGAFVELEPGVEGLVHISRMADYHVEKPEDIVAVGEQIQVKILDINK 656

Query: 432 KSKRITVTHK 441
           + +RI+++ K
Sbjct: 657 QDQRISLSIK 666


>gi|367467422|ref|ZP_09467362.1| SSU ribosomal protein S1p [Patulibacter sp. I11]
 gi|365817505|gb|EHN12463.1| SSU ribosomal protein S1p [Patulibacter sp. I11]
          Length = 494

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 22/218 (10%)

Query: 1197 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1256
             ++CKV+E++R      +V LS R+ L+         +             ++ L P +I
Sbjct: 161  IIECKVIELNRQ---RNNVVLSRRAVLEEERKEQRQAI-------------LDVLQPGVI 204

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            V+G + N+   G F+ L+  +D  + +S LS  +V  P +   IG  V  +VL ++   +
Sbjct: 205  VEGQISNIVDFGAFVDLN-GIDGLIHISELSWTHVNHPTEVVAIGDTVQVKVLDIDRDRQ 263

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
            R+ + LK    +T        +   +VGD + G + +V ++G F+ I    + GL H+SE
Sbjct: 264  RISLGLK----QTQEDPWQRVVDTYNVGDELEGTVTKVVTFGAFVEI-MEGVEGLVHISE 318

Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            L+  HV++   +   G+ VKVKIL++D ++RR+SL +K
Sbjct: 319  LAAHHVESPREVVHPGDDVKVKILEIDDDRRRLSLSVK 356



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++PG++V+G++  +  FGA V    G+  L  +  +S   +  P +   +G  +  +VL 
Sbjct: 199 LQPGVIVEGQISNIVDFGAFVDL-NGIDGLIHISELSWTHVNHPTEVVAIGDTVQVKVLD 257

Query: 431 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           +    +RI++  K+T       ++ +Y    D L   G +TK+   G FV    GV+G  
Sbjct: 258 IDRDRQRISLGLKQTQEDPWQRVVDTY-NVGDEL--EGTVTKVVTFGAFVEIMEGVEGLV 314

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
             SEL       P  + H G  VK +I+      RR++LS
Sbjct: 315 HISELAAHHVESPREVVHPGDDVKVKILEIDDDRRRLSLS 354



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            L  L  G IV GQI  +  +G F+ +   +  GL H+SELS  HV++   +   G+ V+V
Sbjct: 196  LDVLQPGVIVEGQISNIVDFGAFVDLNGID--GLIHISELSWTHVNHPTEVVAIGDTVQV 253

Query: 1398 KILKVDKEKRRISLGMKSS 1416
            K+L +D++++RISLG+K +
Sbjct: 254  KVLDIDRDRQRISLGLKQT 272



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 44/227 (19%)

Query: 601 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           +++ L+ + +N++LS +  L     +Q  +    + P  +V G + NI++ G FV   G 
Sbjct: 165 KVIELNRQRNNVVLSRRAVLEEERKEQRQAILDVLQPGVIVEGQISNIVDFGAFVDLNG- 223

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+         ++   +G +V+  +LD++ +  RI+L LKQ+           
Sbjct: 224 IDGLIHISELSWTHVNHPTEVVAIGDTVQVKVLDIDRDRQRISLGLKQT----------- 272

Query: 720 EHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 776
                               E  W   V+ + +G  +EG V +   FG  V   E   V 
Sbjct: 273 -------------------QEDPWQRVVDTYNVGDELEGTVTKVVTFGAFVEIMEG--VE 311

Query: 777 GFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 816
           G +   +LA   VES       G  ++  IL++    R + LS+K V
Sbjct: 312 GLVHISELAAHHVESPREVVHPGDDVKVKILEIDDDRRRLSLSVKRV 358


>gi|395204361|ref|ZP_10395301.1| 30S ribosomal protein S1 [Propionibacterium humerusii P08]
 gi|422440242|ref|ZP_16517056.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3]
 gi|422471366|ref|ZP_16547866.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2]
 gi|422572458|ref|ZP_16648028.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1]
 gi|313837427|gb|EFS75141.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2]
 gi|314929361|gb|EFS93192.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1]
 gi|314971634|gb|EFT15732.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3]
 gi|328907023|gb|EGG26789.1| 30S ribosomal protein S1 [Propionibacterium humerusii P08]
          Length = 498

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            +TV ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VTVDDLGSTEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S                   + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQSF-------------LH 221

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R S    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQSFLHQLQ 224

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|282854237|ref|ZP_06263574.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
 gi|386071678|ref|YP_005986574.1| 30S ribosomal protein S1 [Propionibacterium acnes ATCC 11828]
 gi|422390898|ref|ZP_16470993.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1]
 gi|422459760|ref|ZP_16536408.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2]
 gi|422464648|ref|ZP_16541255.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1]
 gi|422466302|ref|ZP_16542878.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4]
 gi|422470228|ref|ZP_16546749.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3]
 gi|422564991|ref|ZP_16640642.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2]
 gi|422576182|ref|ZP_16651720.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1]
 gi|282583690|gb|EFB89070.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
 gi|314923224|gb|EFS87055.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1]
 gi|314966991|gb|EFT11090.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2]
 gi|314980945|gb|EFT25039.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3]
 gi|315091676|gb|EFT63652.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4]
 gi|315093089|gb|EFT65065.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1]
 gi|315103138|gb|EFT75114.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2]
 gi|327327811|gb|EGE69587.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1]
 gi|353456044|gb|AER06563.1| 30S ribosomal protein S1 [Propionibacterium acnes ATCC 11828]
          Length = 498

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|300741419|ref|ZP_07071440.1| ribosomal protein S1 [Rothia dentocariosa M567]
 gi|311113502|ref|YP_003984724.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931]
 gi|300380604|gb|EFJ77166.1| ribosomal protein S1 [Rothia dentocariosa M567]
 gi|310944996|gb|ADP41290.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931]
          Length = 486

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 189/416 (45%), Gaps = 66/416 (15%)

Query: 1013 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1062
            +S     + +++IG++  F +  D +I     G  V+G V KVD++  LL I       +
Sbjct: 1    MSTNIPQVAINDIGNEEEFLKAVDETIKYFNDGDLVSGQVVKVDHDEVLLDIGYKTEGVI 60

Query: 1063 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1122
             ++   +    +P E+        +G  +   VL+  KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDVDPGEV------VAVGDEIEALVLT--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1123 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            I        I E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------IKENDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
                          Q ++ K++E+ +      +V LS R+ L+   S   S         
Sbjct: 164  --------------QQLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSTF------- 199

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
                  +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 200  ------LNQLEKGQVREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLF 1360
            + V   VL V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F
Sbjct: 253  QPVTVEVLEVDLDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAF 307

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +E+  + GL H+SEL+  HVD  E +   GE++ VKI+ +D ++RRISL +K +
Sbjct: 308  VRVED-GIEGLVHISELAVRHVDLAEQVVSVGEELFVKIIDIDMDRRRISLSLKQA 362



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   VL 
Sbjct: 203 LEKGQVREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLE 261

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G  
Sbjct: 262 VDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +        +  VG+ +  +I+      RRI+LS 
Sbjct: 319 HISELAVRHVDLAEQVVSVGEELFVKIIDIDMDRRRISLSL 359



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 157/351 (44%), Gaps = 37/351 (10%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G+V+ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 33  GDLVSGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDEIEALVLTKED 92

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKIKE-NDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNQLE 204

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P    + L
Sbjct: 205 KGQVREGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQP-VTVEVL 260

Query: 603 LV-LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
            V LD E  +L L A        Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 261 EVDLDRERVSLSLKA-------TQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 660 LTGFAPRSK-AVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+ AV  +  DL+ +   VG+ +   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAV--RHVDLAEQVVSVGEELFVKIIDIDMDRRRISLSLKQA 362


>gi|283780187|ref|YP_003370942.1| 30S ribosomal protein S1 [Pirellula staleyi DSM 6068]
 gi|283438640|gb|ADB17082.1| ribosomal protein S1 [Pirellula staleyi DSM 6068]
          Length = 600

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 179/391 (45%), Gaps = 68/391 (17%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKA 1090
            ++ IGQ   G V  +    A + +   +   L I D ++E    PSE+    +   +   
Sbjct: 215  ELEIGQVRKGVVKNIAEFGAFVDLG-GIDGLLHITDMSWERIGHPSEMVAIDQEIEV--- 270

Query: 1091 VTGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1145
                VL I++EKK + L L+     P+ D             + T    G +V G +  +
Sbjct: 271  ---MVLHIDREKKKIALGLKQKEGNPWAD-------------VDTKYPVGTVVKGSVVNV 314

Query: 1146 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
            +S   G  V++ P + G VH +E+           +      P    + G  +   +L +
Sbjct: 315  MSY--GAFVKLEPGIEGLVHISEMS----------WTRRVNHPSELVNIGDEISVVILGV 362

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNV 1264
             +  +     +LSL     GM  T  +  +           ++ +  P + IV+G V+N+
Sbjct: 363  DKDGQ-----QLSL-----GMKQTQENPWT-----------RVAEKYPVDTIVEGKVRNL 401

Query: 1265 TSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            T+ G F+ L   +D  + +S++S    +  P +    G+ V  ++LSV+   +R+ + LK
Sbjct: 402  TNYGAFVELEEGIDGLLHVSDMSWTRKISHPSEMLEKGQPVRCKILSVDQERRRIALGLK 461

Query: 1324 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1383
              D    ++   +       G +V G + ++ ++G+F+ +E+  L GL H+SEL++  V+
Sbjct: 462  QLDEDPWAR---DIPGKYQPGQVVSGAVTKITNFGVFVGLED-GLEGLLHISELADHKVE 517

Query: 1384 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            N E + + G+K+ VKIL+VD ++R+I L  K
Sbjct: 518  NPEDVVKVGDKIDVKILRVDIDERKIGLSRK 548



 Score = 70.9 bits (172), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 137/290 (47%), Gaps = 39/290 (13%)

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
            M   I EG +V G +S+ + G  GL+V I             + + V  P S  D  +  
Sbjct: 125  MMDRIKEGQVVTGTVSRKIKG--GLLVDI-------------EGVNVFLPASQVDIRRPA 169

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
             +  Y  G+ V+C+VL+I    R   ++ +S RS ++     +   L             
Sbjct: 170  DIGDYI-GRTVQCEVLKIDEARR---NIVVSRRSLIERQREEDREAL------------- 212

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +++L    + +G VKN+   G F+ L   +D  + ++++S   +  P +   I + +   
Sbjct: 213  LKELEIGQVRKGVVKNIAEFGAFVDLG-GIDGLLHITDMSWERIGHPSEMVAIDQEIEVM 271

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            VL ++   K++ + LK  +    +  +    +   VG +V G +  V SYG F+ +E   
Sbjct: 272  VLHIDREKKKIALGLKQKEGNPWADVD----TKYPVGTVVKGSVVNVMSYGAFVKLE-PG 326

Query: 1368 LVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SE+S    V++   +   G+++ V IL VDK+ +++SLGMK +
Sbjct: 327  IEGLVHISEMSWTRRVNHPSELVNIGDEISVVILGVDKDGQQLSLGMKQT 376



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 65/124 (52%), Gaps = 2/124 (1%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IG+ V   VL ++   + + V+ ++   R   +     L  L +G +  G +K +  +G 
Sbjct: 175  IGRTVQCEVLKIDEARRNIVVSRRSLIERQREEDREALLKELEIGQVRKGVVKNIAEFGA 234

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
            F+ +   +  GL H++++S + + +   +    ++++V +L +D+EK++I+LG+K     
Sbjct: 235  FVDLGGID--GLLHITDMSWERIGHPSEMVAIDQEIEVMVLHIDREKKKIALGLKQKEGN 292

Query: 1420 NDAD 1423
              AD
Sbjct: 293  PWAD 296



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 84/399 (21%), Positives = 159/399 (39%), Gaps = 66/399 (16%)

Query: 446 KSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           K K   L ++ E  DR+    +  G +++  K G  V    GV  F P S++ +     P
Sbjct: 113 KRKAKKLDAWKEMMDRIKEGQVVTGTVSRKIKGGLLVDI-EGVNVFLPASQVDI---RRP 168

Query: 502 SSMY-HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL------VKLGSLVSGVVDV 554
           + +  ++G+ V+C ++    A R I +S      R  E+D       +++G +  GVV  
Sbjct: 169 ADIGDYIGRTVQCEVLKIDEARRNIVVSRRSLIERQREEDREALLKELEIGQVRKGVVKN 228

Query: 555 VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLL 613
           +       +V   G       T+   + + H + M ++ +   E + +++ +D E   + 
Sbjct: 229 IAEFGA--FVDLGGIDGLLHITDMSWERIGHPSEMVAIDQ---EIEVMVLHIDREKKKIA 283

Query: 614 LSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 672
           L  K    N      +D    +P  +VV G V N++  G FV+    + G    S+    
Sbjct: 284 LGLKQKEGNPW----ADVDTKYPVGTVVKGSVVNVMSYGAFVKLEPGIEGLVHISEMSWT 339

Query: 673 QRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 731
           +R +  S+   +G  +   IL V+ +  +++L +KQ+                       
Sbjct: 340 RRVNHPSELVNIGDEISVVILGVDKDGQQLSLGMKQT----------------------- 376

Query: 732 QSSKHNGSELKW---VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--- 785
                   E  W    E + + +++EGKV    ++G  V  EE  D    ++        
Sbjct: 377 -------QENPWTRVAEKYPVDTIVEGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKI 429

Query: 786 ---GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 821
                 +E G  ++  IL V +  R + L LK +  D +
Sbjct: 430 SHPSEMLEKGQPVRCKILSVDQERRRIALGLKQLDEDPW 468



 Score = 44.7 bits (104), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 7/157 (4%)

Query: 376 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVKSK 434
           +V+GKV  + ++GA V+   G+  L  +  MS   +I  P +  + G  +  ++L V  +
Sbjct: 393 IVEGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKISHPSEMLEKGQPVRCKILSVDQE 452

Query: 435 RITVTHK-KTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           R  +    K L +   A  I   Y       +  G +TKI   G FV   +G++G    S
Sbjct: 453 RRRIALGLKQLDEDPWARDIPGKYQPGQ---VVSGAVTKITNFGVFVGLEDGLEGLLHIS 509

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           EL       P  +  VG  +  +I+      R+I LS
Sbjct: 510 ELADHKVENPEDVVKVGDKIDVKILRVDIDERKIGLS 546



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 163/405 (40%), Gaps = 52/405 (12%)

Query: 63  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
           ++G+ V C VL++D+ ++ I   +  L  R     +   L+ ++ G V    VK+I + G
Sbjct: 174 YIGRTVQCEVLKIDEARRNIVVSRRSLIERQREEDREALLKELEIGQVRKGVVKNIAEFG 233

Query: 123 YILHFGLPSFTGFLPRNNLA--------ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 174
             +  G     G L   +++        E   ID +    ++ +V  IDR +K + L   
Sbjct: 234 AFVDLG--GIDGLLHITDMSWERIGHPSEMVAIDQE----IEVMVLHIDREKKKIALGLK 287

Query: 175 PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 234
               +     D K         G +V   V +++  G  +       G V I  +  T  
Sbjct: 288 QKEGNPWADVDTK------YPVGTVVKGSVVNVMSYGAFVKLEPGIEGLVHISEMSWTRR 341

Query: 235 TTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDI 285
             +     N   +++  IL VD   + + L +     NP+  +  + P   +   KV ++
Sbjct: 342 VNHPSELVNIGDEISVVILGVDKDGQQLSLGMKQTQENPWTRVAEKYPVDTIVEGKVRNL 401

Query: 286 YDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 341
            +    V ++ G+  LL +     +  +S P+ +            LEK    G  VR +
Sbjct: 402 TNYGAFVELEEGIDGLLHVSDMSWTRKISHPSEM------------LEK----GQPVRCK 445

Query: 342 ILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
           IL   +    +A G+ +              +PG VV G V  + +FG  V    G++ L
Sbjct: 446 ILSVDQERRRIALGLKQLDEDPWARDIPGKYQPGQVVSGAVTKITNFGVFVGLEDGLEGL 505

Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 443
             +  +++ ++  P    KVG ++  ++L   +  ++I ++ K+ 
Sbjct: 506 LHISELADHKVENPEDVVKVGDKIDVKILRVDIDERKIGLSRKRV 550


>gi|417972279|ref|ZP_12613190.1| 30S ribosomal protein S1 [Corynebacterium glutamicum S9114]
 gi|344043437|gb|EGV39130.1| 30S ribosomal protein S1 [Corynebacterium glutamicum S9114]
          Length = 486

 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL++ HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 405


>gi|422554450|ref|ZP_16630222.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2]
 gi|314987702|gb|EFT31793.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2]
          Length = 498

 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTESVIPSKELSI 87

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      +++ P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTESVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|116513917|ref|YP_812823.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            ATCC BAA-365]
 gi|385815547|ref|YP_005851938.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            2038]
 gi|116093232|gb|ABJ58385.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
            bulgaricus ATCC BAA-365]
 gi|325125584|gb|ADY84914.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            2038]
          Length = 401

 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 45/265 (16%)

Query: 1181 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1235
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1236 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1269
                    T++D P K      H E IE+            L    +V+G V  +T+ G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGS 212

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
              Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HVSE++  HVD    + 
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEIAYKHVDKPSDVL 326

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMK 1414
              G KVKVK+L +D  KRRISL +K
Sbjct: 327  TVGPKVKVKVLNIDPSKRRISLSIK 351



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 288 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 344
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 345 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 462
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 463 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 520
             +  G +  +   G FV   +G+QG    SE+      +PS +  VG  VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDP 341

Query: 521 ASRRINLSF 529
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 34/199 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD+V GR+S++ +   G  V IG  + G VH +E+    V  P         D L     
Sbjct: 197  GDVVEGRVSRLTN--FGSFVDIG-GVDGLVHISEISYKHVDKP--------SDVLK---V 242

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++ +                  P    +    L+  
Sbjct: 243  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATSSLNEG 282

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             +++G VK++T+ G F+ ++  +   V +S ++  +V+ P     +G  V  +VL+++P 
Sbjct: 283  DVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPS 342

Query: 1315 SKRVEVTLKTSDSRTASQS 1333
             +R+ +++K  D   AS S
Sbjct: 343  KRRISLSIKQVDPENASSS 361



 Score = 44.3 bits (103), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 141/365 (38%), Gaps = 53/365 (14%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 538
           GV+G   R +   D          +G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTFKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 539 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 596 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 654
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  +   G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFV 214

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 775 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 827
           + G +   ++A   V+        G  ++  +L++  ++R + LS+K V  +    +N  
Sbjct: 305 IQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVDPENASSSNDR 364

Query: 828 RQAQK 832
            +A++
Sbjct: 365 PRARR 369


>gi|50842265|ref|YP_055492.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
 gi|289426251|ref|ZP_06427997.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
 gi|289427839|ref|ZP_06429545.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
 gi|295130353|ref|YP_003581016.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
 gi|335052226|ref|ZP_08545118.1| 30S ribosomal protein S1 [Propionibacterium sp. 409-HC1]
 gi|335053985|ref|ZP_08546810.1| 30S ribosomal protein S1 [Propionibacterium sp. 434-HC2]
 gi|342212943|ref|ZP_08705668.1| 30S ribosomal protein S1 [Propionibacterium sp. CC003-HC2]
 gi|354606752|ref|ZP_09024722.1| 30S ribosomal protein S1 [Propionibacterium sp. 5_U_42AFAA]
 gi|365962490|ref|YP_004944056.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn31]
 gi|365964734|ref|YP_004946299.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn17]
 gi|365973670|ref|YP_004955229.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn33]
 gi|386023737|ref|YP_005942040.1| 30S ribosomal protein S1 [Propionibacterium acnes 266]
 gi|407935191|ref|YP_006850833.1| 30S ribosomal protein S1 [Propionibacterium acnes C1]
 gi|417929618|ref|ZP_12573002.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182]
 gi|419420987|ref|ZP_13961215.1| 30S ribosomal protein S1 [Propionibacterium acnes PRP-38]
 gi|422385153|ref|ZP_16465288.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3]
 gi|422388231|ref|ZP_16468334.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2]
 gi|422393353|ref|ZP_16473406.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1]
 gi|422396184|ref|ZP_16476215.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1]
 gi|422424231|ref|ZP_16501181.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1]
 gi|422428339|ref|ZP_16505250.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1]
 gi|422431256|ref|ZP_16508135.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2]
 gi|422432942|ref|ZP_16509810.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2]
 gi|422435485|ref|ZP_16512342.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2]
 gi|422443300|ref|ZP_16520098.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1]
 gi|422445462|ref|ZP_16522209.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1]
 gi|422448818|ref|ZP_16525543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3]
 gi|422454691|ref|ZP_16531371.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3]
 gi|422461630|ref|ZP_16538254.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1]
 gi|422474499|ref|ZP_16550963.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1]
 gi|422477823|ref|ZP_16554246.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1]
 gi|422480378|ref|ZP_16556781.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1]
 gi|422482871|ref|ZP_16559260.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1]
 gi|422485652|ref|ZP_16562014.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2]
 gi|422488901|ref|ZP_16565230.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2]
 gi|422490994|ref|ZP_16567309.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1]
 gi|422493049|ref|ZP_16569349.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1]
 gi|422496028|ref|ZP_16572315.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1]
 gi|422498768|ref|ZP_16575040.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3]
 gi|422501060|ref|ZP_16577314.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2]
 gi|422502579|ref|ZP_16578824.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2]
 gi|422506528|ref|ZP_16582751.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2]
 gi|422507862|ref|ZP_16584043.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2]
 gi|422510900|ref|ZP_16587046.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1]
 gi|422513122|ref|ZP_16589245.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2]
 gi|422515996|ref|ZP_16592105.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2]
 gi|422521619|ref|ZP_16597649.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1]
 gi|422527010|ref|ZP_16603000.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1]
 gi|422529451|ref|ZP_16605417.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1]
 gi|422534099|ref|ZP_16610023.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1]
 gi|422537621|ref|ZP_16613509.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1]
 gi|422539707|ref|ZP_16615580.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1]
 gi|422542629|ref|ZP_16618479.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1]
 gi|422545683|ref|ZP_16621513.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1]
 gi|422547568|ref|ZP_16623384.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3]
 gi|422549423|ref|ZP_16625223.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1]
 gi|422552498|ref|ZP_16628289.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3]
 gi|422556547|ref|ZP_16632301.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2]
 gi|422561230|ref|ZP_16636917.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1]
 gi|422563322|ref|ZP_16638999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1]
 gi|422568915|ref|ZP_16644533.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2]
 gi|422569692|ref|ZP_16645299.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1]
 gi|422578941|ref|ZP_16654465.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4]
 gi|50839867|gb|AAT82534.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
 gi|289153416|gb|EFD02131.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
 gi|289158971|gb|EFD07169.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
 gi|291375457|gb|ADD99311.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
 gi|313764712|gb|EFS36076.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1]
 gi|313802151|gb|EFS43383.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2]
 gi|313807266|gb|EFS45753.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2]
 gi|313809772|gb|EFS47493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1]
 gi|313813186|gb|EFS50900.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1]
 gi|313815779|gb|EFS53493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1]
 gi|313818313|gb|EFS56027.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2]
 gi|313820074|gb|EFS57788.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1]
 gi|313823117|gb|EFS60831.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2]
 gi|313825606|gb|EFS63320.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1]
 gi|313827848|gb|EFS65562.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2]
 gi|313830682|gb|EFS68396.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1]
 gi|313833902|gb|EFS71616.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1]
 gi|313838482|gb|EFS76196.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1]
 gi|314915204|gb|EFS79035.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4]
 gi|314918567|gb|EFS82398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1]
 gi|314919829|gb|EFS83660.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3]
 gi|314925498|gb|EFS89329.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3]
 gi|314931844|gb|EFS95675.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1]
 gi|314956000|gb|EFT00398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1]
 gi|314958395|gb|EFT02498.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1]
 gi|314960251|gb|EFT04353.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2]
 gi|314963061|gb|EFT07161.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1]
 gi|314968106|gb|EFT12205.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1]
 gi|314973683|gb|EFT17779.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1]
 gi|314976278|gb|EFT20373.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1]
 gi|314978238|gb|EFT22332.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2]
 gi|314983513|gb|EFT27605.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1]
 gi|314990181|gb|EFT34272.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3]
 gi|315080309|gb|EFT52285.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1]
 gi|315084567|gb|EFT56543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2]
 gi|315085905|gb|EFT57881.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3]
 gi|315088677|gb|EFT60653.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1]
 gi|315096304|gb|EFT68280.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1]
 gi|315098286|gb|EFT70262.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2]
 gi|315101023|gb|EFT72999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1]
 gi|327325939|gb|EGE67729.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2]
 gi|327330637|gb|EGE72383.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1]
 gi|327332188|gb|EGE73925.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3]
 gi|327442810|gb|EGE89464.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2]
 gi|327446180|gb|EGE92834.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2]
 gi|327447838|gb|EGE94492.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1]
 gi|327451032|gb|EGE97686.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3]
 gi|327453616|gb|EGF00271.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2]
 gi|328753065|gb|EGF66681.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1]
 gi|328753719|gb|EGF67335.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1]
 gi|328759190|gb|EGF72806.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2]
 gi|328760564|gb|EGF74132.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1]
 gi|332675193|gb|AEE72009.1| 30S ribosomal protein S1 [Propionibacterium acnes 266]
 gi|333764312|gb|EGL41709.1| 30S ribosomal protein S1 [Propionibacterium sp. 409-HC1]
 gi|333765766|gb|EGL43098.1| 30S ribosomal protein S1 [Propionibacterium sp. 434-HC2]
 gi|340768487|gb|EGR91012.1| 30S ribosomal protein S1 [Propionibacterium sp. CC003-HC2]
 gi|340773741|gb|EGR96233.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182]
 gi|353556867|gb|EHC26236.1| 30S ribosomal protein S1 [Propionibacterium sp. 5_U_42AFAA]
 gi|365739171|gb|AEW83373.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn31]
 gi|365741415|gb|AEW81109.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn17]
 gi|365743669|gb|AEW78866.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn33]
 gi|379977478|gb|EIA10803.1| 30S ribosomal protein S1 [Propionibacterium acnes PRP-38]
 gi|407903772|gb|AFU40602.1| 30S ribosomal protein S1 [Propionibacterium acnes C1]
 gi|456739550|gb|EMF64089.1| 30S ribosomal protein S1 [Propionibacterium acnes FZ1/2/0]
          Length = 498

 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|418029506|ref|ZP_12668044.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
            subsp. bulgaricus CNCM I-1632]
 gi|354689812|gb|EHE89785.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
            subsp. bulgaricus CNCM I-1632]
          Length = 401

 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 45/265 (16%)

Query: 1181 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1235
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1236 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1269
                    T++D P K      H E IE+            L    +V+G V  +T+ G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGS 212

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
              Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HVSE++  HVD    + 
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEIAYKHVDKPSDVL 326

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMK 1414
              G KVKVK+L +D  KRRISL +K
Sbjct: 327  TVGPKVKVKVLNIDPSKRRISLSIK 351



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 288 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 344
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 345 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 462
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 463 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 520
             +  G +  +   G FV   +G+QG    SE+      +PS +  VG  VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDP 341

Query: 521 ASRRINLSF 529
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 34/208 (16%)

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
            +N+ + +  GD+V GR+S++ +   G  V IG  + G VH +E+    V  P        
Sbjct: 188  ENVASQLVVGDVVEGRVSRLTN--FGSFVDIG-GVDGLVHISEISYKHVDKP-------- 236

Query: 1186 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1245
             D L     GQ VK KV+ I         + LS++ +                  P    
Sbjct: 237  SDVLK---VGQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFE 273

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            +    L+   +++G VK++T+ G F+ ++  +   V +S ++  +V+ P     +G  V 
Sbjct: 274  QATSSLNEGDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVK 333

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
             +VL+++P  +R+ +++K  D   AS S
Sbjct: 334  VKVLNIDPSKRRISLSIKQVDPENASSS 361



 Score = 45.8 bits (107), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 142/365 (38%), Gaps = 53/365 (14%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 538
           GV+G   R +   D          +G  +K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTIKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 539 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 596 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 654
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  +   G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFV 214

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 775 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 827
           + G +   ++A   V+        G  ++  +L++  ++R + LS+K V  +    +N  
Sbjct: 305 IQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVDPENASSSNDR 364

Query: 828 RQAQK 832
            +A++
Sbjct: 365 PRARR 369


>gi|350569650|ref|ZP_08938046.1| 30S ribosomal protein S1 [Propionibacterium avidum ATCC 25577]
 gi|348660468|gb|EGY77178.1| 30S ribosomal protein S1 [Propionibacterium avidum ATCC 25577]
          Length = 498

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.9 bits (115), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|221195607|ref|ZP_03568661.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
 gi|221184373|gb|EEE16766.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
          Length = 441

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 178/387 (45%), Gaps = 56/387 (14%)

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGK 1089
             D + G  VTG V K++ +  LL I       + A+   +    EPSEL       H+G 
Sbjct: 29   TDFNEGDLVTGTVVKIERDEVLLDIGYKSEGVIPARELSIRKDVEPSEL------VHMGD 82

Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1149
             +   VL   KE K  RLVL   +        + S   ++   + G+ V G + +++ G 
Sbjct: 83   EIEALVL--QKEDKEGRLVLSKKR-----AEYERSWKAVEEKFNAGETVEGEVIEVVKG- 134

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
             GL++ IG  L G +            P S  D  +   LS +  G  ++ +V+E+ R  
Sbjct: 135  -GLILDIG--LRGFL------------PASLVDLRRVKDLSTF-MGTRIEARVIEMDRN- 177

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
                +V LS R  L+        D+       GK       L   M +QG V ++   G 
Sbjct: 178  --RNNVVLSRRVVLEEARKAERQDI------LGK-------LKVGMKLQGTVSSIVEFGA 222

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ L   +D  V +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK    +T
Sbjct: 223  FVDLG-GIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK----QT 277

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
                    +S   V  IV G + ++ ++G F+ +    + GL H+SE+++ HV     + 
Sbjct: 278  TEDPWRVLVSKFPVDAIVEGTVTKLVTFGAFVDL-GDGVEGLVHISEMAKQHVTAPSQVC 336

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSS 1416
              G+KV+VK++++D ++RRISL MK++
Sbjct: 337  TVGDKVQVKVMEIDLDRRRISLSMKAA 363



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K GM ++G V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +VL 
Sbjct: 204 LKVGMKLQGTVSSIVEFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLD 262

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +RI++  K+T       ++S +       I  G +TK+   G FV   +GV+G  
Sbjct: 263 VDLNRERISLGLKQTTEDPWRVLVSKFPVDA---IVEGTVTKLVTFGAFVDLGDGVEGLV 319

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SE+       PS +  VG  V+ ++M      RRI+LS 
Sbjct: 320 HISEMAKQHVTAPSQVCTVGDKVQVKVMEIDLDRRRISLSM 360



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 143/367 (38%), Gaps = 54/367 (14%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G + KIE+    +      +G  P  EL +    EPS + H+G  ++  ++      
Sbjct: 36  LVTGTVVKIERDEVLLDIGYKSEGVIPARELSIRKDVEPSELVHMGDEIEALVLQKEDKE 95

Query: 523 RRINLSFMMKPTRVSE---DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS        S    ++    G  V G V  V    +++ +  +G+   ++     
Sbjct: 96  GRLVLSKKRAEYERSWKAVEEKFNAGETVEGEVIEVVKGGLILDIGLRGFLPASLVDLRR 155

Query: 580 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNS 638
              L  +T M + I+      +++ +D   +N++LS +  L  + +    D    +    
Sbjct: 156 VKDL--STFMGTRIEA-----RVIEMDRNRNNVVLSRRVVLEEARKAERQDILGKLKVGM 208

Query: 639 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 698
            + G V +I+E G FV  LG + G    S+         S+   VGQ V   +LDV+   
Sbjct: 209 KLQGTVSSIVEFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNR 267

Query: 699 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVIEG 755
            RI+L LKQ+                              +E  W   V  F + +++EG
Sbjct: 268 ERISLGLKQT------------------------------TEDPWRVLVSKFPVDAIVEG 297

Query: 756 KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERL 808
            V +   FG  V   +   V G +   ++A   V +       G  +Q  ++++    R 
Sbjct: 298 TVTKLVTFGAFVDLGDG--VEGLVHISEMAKQHVTAPSQVCTVGDKVQVKVMEIDLDRRR 355

Query: 809 VDLSLKT 815
           + LS+K 
Sbjct: 356 ISLSMKA 362


>gi|418245351|ref|ZP_12871758.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 14067]
 gi|354510759|gb|EHE83681.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 14067]
          Length = 486

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL++ HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 405


>gi|405983923|ref|ZP_11042228.1| ribosomal protein S1 [Slackia piriformis YIT 12062]
 gi|404388738|gb|EJZ83820.1| ribosomal protein S1 [Slackia piriformis YIT 12062]
          Length = 396

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 148/305 (48%), Gaps = 48/305 (15%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            G++V G + +++ G  GL++ IG   +      +L+ +   D   G +            
Sbjct: 121  GEVVTGEVIEVVKG--GLILDIGLRGFLPASLVDLRRVKDLDMYLGTE------------ 166

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
               ++ +V+E+ R      +V LS R  L+ G  +  +  LS               L+ 
Sbjct: 167  ---IEARVIEMDRN---RNNVVLSRRVLLEEGRKNERAEILSK--------------LAK 206

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
             M ++G V ++   G F+ L   +D  V +S LS  +V  P +   +G  V   VL V+ 
Sbjct: 207  GMRLKGTVSSIVDFGAFVDLG-GIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDL 265

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
              +R+ + LK    +T     +  + +  VG IV G++ ++  +G FI + N N+ GL H
Sbjct: 266  QRERISLGLK----QTTEDPWLKLVESYPVGSIVDGKVTKIVPFGAFIELGN-NVEGLVH 320

Query: 1374 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1433
            +SE++  H+D    + + G++VKVK+++++ ++RRISL MK++     AD L    E E 
Sbjct: 321  ISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRISLSMKAA-----ADELGF--EIEV 373

Query: 1434 DEAIE 1438
            DE I+
Sbjct: 374  DETIQ 378



 Score = 77.4 bits (189), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +  GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 202 SKLAKGMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEV 260

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V  + +RI++  K+T     L ++ SY   +   I  G +TKI   G F+   N V+G
Sbjct: 261 LDVDLQRERISLGLKQTTEDPWLKLVESYPVGS---IVDGKVTKIVPFGAFIELGNNVEG 317

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SE+       P+ +  VGQ VK ++M   P  RRI+LS 
Sbjct: 318 LVHISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRISLSM 360



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/365 (19%), Positives = 148/365 (40%), Gaps = 50/365 (13%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G + K+E     +      +G  P  EL +    +PS +  +G  ++  ++      
Sbjct: 36  LVKGTVVKLEHDEVLLDIGFKSEGVIPSRELSIRKDADPSDIVALGDEIEALVLQKEDKD 95

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +   +  ++  K G +V+G V  V    +++ +  +G+   ++     
Sbjct: 96  GRLILSKKRAEYERAWIQVEEKFKAGEVVTGEVIEVVKGGLILDIGLRGFLPASLVDLRR 155

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 637
              L+           G E + +++ +D   +N++LS +  L    +   ++  S +   
Sbjct: 156 VKDLDMYL--------GTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLAKG 207

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
             + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 208 MRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDLQ 266

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             RI+L LKQ+                                LK VE + +GS+++GKV
Sbjct: 267 RERISLGLKQTTEDPW---------------------------LKLVESYPVGSIVDGKV 299

Query: 758 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVD 810
            +   FG  +     ++V G +   ++A   +++       G  ++  ++++    R + 
Sbjct: 300 TKIVPFGAFIEL--GNNVEGLVHISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRIS 357

Query: 811 LSLKT 815
           LS+K 
Sbjct: 358 LSMKA 362



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 151/354 (42%), Gaps = 27/354 (7%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           T ++   G +VKG V+ ++    ++      + + P   +S  +   P     +G E+  
Sbjct: 27  TLTNFDEGDLVKGTVVKLEHDEVLLDIGFKSEGVIPSRELSIRKDADPSDIVALGDEIEA 86

Query: 427 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
            VL  + K  R+ ++ K+   +     +    +A +  +  G + ++ K G  +    G+
Sbjct: 87  LVLQKEDKDGRLILSKKRAEYERAWIQVEEKFKAGE--VVTGEVIEVVKGGLILDI--GL 142

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSE 538
           +GF P S + L    +   MY +G  ++ R++      +++  SRR+ L    K  R   
Sbjct: 143 RGFLPASLVDLRR-VKDLDMY-LGTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEI 200

Query: 539 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGY 597
              +  G  + G V  +      V +   G   G +    L+ +H+ H +    V+K G 
Sbjct: 201 LSKLAKGMRLKGTVSSIVDFGAFVDL---GGIDGLVHISELSWNHVNHPS---EVVKVGD 254

Query: 598 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 655
           E + ++L +D +   + L  K +  +   +L       +P  S+V G V  I+  G F+ 
Sbjct: 255 EVEVEVLDVDLQRERISLGLKQTTEDPWLKLVES----YPVGSIVDGKVTKIVPFGAFIE 310

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
               + G    S+         ++   VGQ V+  ++++N +  RI+LS+K + 
Sbjct: 311 LGNNVEGLVHISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRISLSMKAAA 364


>gi|104773910|ref|YP_618890.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            ATCC 11842]
 gi|103422991|emb|CAI97673.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            ATCC 11842]
          Length = 401

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 135/265 (50%), Gaps = 45/265 (16%)

Query: 1181 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1235
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1236 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1269
                    T++D P K      H E IE+            L    +V+G V  +T  G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGS 212

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
              Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HVSE++  HVD    + 
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEIAYKHVDKPSDVL 326

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMK 1414
            + G+ VKVK+L +D  KRRISL +K
Sbjct: 327  KVGQDVKVKVLNIDPSKRRISLSIK 351



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 288 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 344
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 345 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
             H E +     +  AFE +    S +  G VV+G+V  +  FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTDFGSFVDI-GGVDGLVHIS 226

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 462
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 463 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 520
             +  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDP 341

Query: 521 ASRRINLSF 529
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 34/199 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD+V GR+S++     G  V IG  + G VH +E+    V  P         D L     
Sbjct: 197  GDVVEGRVSRLTD--FGSFVDIG-GVDGLVHISEISYKHVDKPS--------DVLK---V 242

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++ +                  P    +    L+  
Sbjct: 243  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATSSLNEG 282

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             +++G VK++T+ G F+ ++  +   V +S ++  +V+ P     +G+ V  +VL+++P 
Sbjct: 283  DVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPS 342

Query: 1315 SKRVEVTLKTSDSRTASQS 1333
             +R+ +++K  D   AS S
Sbjct: 343  KRRISLSIKQVDPENASSS 361



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 146/362 (40%), Gaps = 38/362 (10%)

Query: 412 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 471
           VK G  FKV    V R  G   +        T VK + A      +  +     G +T  
Sbjct: 65  VKLGDTFKV---YVVRRAGGDKENGDFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSS 121

Query: 472 EKHGCFVRFYNGVQGFAPRSELG--LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
            + G  V    G +GF P S +        +P    ++G+ +K +I    PA  R+ LS 
Sbjct: 122 VRGGLLVDV--GTRGFLPASLISNRFVSDLKP----YIGKTIKVKITEIDPAKNRLILSH 175

Query: 530 --MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 583
             +++  R    + V     +G +V G V  +T     V +   G   G +    ++   
Sbjct: 176 KELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSFVDI---GGVDGLVHISEIS--Y 230

Query: 584 EHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 642
           +H      V+K G +   +++ +DN+   + LS K +  +  +Q     S ++   V+ G
Sbjct: 231 KHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQA---TSSLNEGDVIEG 287

Query: 643 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 702
            V ++   G FV     + G    S+         S    VGQ V+  +L+++    RI+
Sbjct: 288 EVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPSKRRIS 347

Query: 703 LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV----EGFIIGSVIEGKVH 758
           LS+KQ    +  +S         ++    +SS +N    K++     GF +G +I  ++ 
Sbjct: 348 LSIKQVDPENASSS--------NDRPRARRSSNNNAFARKYMNNDDNGFSLGDMIGDQLK 399

Query: 759 ES 760
            S
Sbjct: 400 NS 401


>gi|404475817|ref|YP_006707248.1| 30S ribosomal protein S1 [Brachyspira pilosicoli B2904]
 gi|404437306|gb|AFR70500.1| 30S ribosomal protein S1 [Brachyspira pilosicoli B2904]
          Length = 556

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 151/345 (43%), Gaps = 15/345 (4%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S++K G +V+GKV  ++ FGA +Q   G+     +P+MS  +I+ P      G E  F+V
Sbjct: 189 SNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQV 248

Query: 429 LGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
           L V K KR      K L               D  I  G +T ++K G FV  Y GV+G 
Sbjct: 249 LSVDKEKRKVDLGIKQLEGDTWYKFVEEYHVGD--IIKGEVTTVKKFGAFVNVYEGVEGL 306

Query: 488 APRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 543
              S+L  +     P+    VG  ++C+I+      R++ L        P   +E D   
Sbjct: 307 IHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLKQVKDNPWDSAERDFPV 366

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
             S+   V  +    A  V+ +  G  +G        D + +   +K  IK   E + ++
Sbjct: 367 KSSVKCKVKRIFKDFA--VFELPNGL-EGICDISDF-DWMNNTVNIKDYIKENEEVEMVI 422

Query: 604 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
           + +D +   + LS K++  +  +    D ++ H  S+V+G V  II++G  V     L G
Sbjct: 423 MSIDRDKQRIKLSYKHTKESPWRVF--DKAYPH-GSIVNGTVKAIIDSGVIVSLENDLEG 479

Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
           +   S+    +   L     VG+S    + +VN    RI+LS ++
Sbjct: 480 YMHISQIDLPKGETLESVLKVGESYPFVVREVNQVKRRISLSRRE 524



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 95/170 (55%), Gaps = 6/170 (3%)

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E + +L    IV+G VKN+   G FI L+  LD  + + N+S   + +P+     G+   
Sbjct: 186  EYLSNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERK 245

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
             +VLSV+   ++V++ +K  +  T  +     +   HVGDI+ G++  V+ +G F+ +  
Sbjct: 246  FQVLSVDKEKRKVDLGIKQLEGDTWYKF----VEEYHVGDIIKGEVTTVKKFGAFVNV-Y 300

Query: 1366 TNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  EGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLK 350



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 109/541 (20%), Positives = 203/541 (37%), Gaps = 80/541 (14%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G I + +    F+ F   V+G   R+E   +P             VK   + ++   
Sbjct: 31  VVSGKIVQFDDTDVFIDFNYKVEGKINRNEFDKEP-------------VKGEEIEAVIKG 77

Query: 523 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGTIPTEHLA- 580
           +  N  +++   R  E D  K   L+   V   TP N VV   I  G++   +       
Sbjct: 78  QDNNKGYVILSKR--EIDKRKAQDLIEDAVKNATPINGVVKEAIKGGFTVSIMGHSAFCP 135

Query: 581 -DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 637
              ++ +  +K     G EF Q  ++D + +  ++ ++  L    Q   +    S++   
Sbjct: 136 FSQIDISRGIKETDYIGKEF-QFKIIDRKGNKDIVVSRRVLQEETQNKVIEEYLSNLKEG 194

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            +V G V NI + G F++    L GF         +  +       G+  +  +L V+ E
Sbjct: 195 DIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKE 254

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             ++ L +KQ                LE             +  K+VE + +G +I+G+V
Sbjct: 255 KRKVDLGIKQ----------------LE-----------GDTWYKFVEEYHVGDIIKGEV 287

Query: 758 HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 811
                FG  V+  E      H     + +H       V+ G+ ++  ILD+   ER + L
Sbjct: 288 TTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTL 347

Query: 812 SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
            LK V               K      A +D  V  +V   V+ + +++ V  LP     
Sbjct: 348 GLKQV---------------KDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNGLEG 392

Query: 872 IGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 930
           I   S  D+       K ++   + V   +M++       R+ L  K   E+      +A
Sbjct: 393 ICDISDFDWMNNTVNIKDYIKENEEVEMVIMSIDRDKQ--RIKLSYKHTKESPWRVFDKA 450

Query: 931 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 990
                Y  GS+V   +  I    + +       G +HI++++  K   +E++    K+G+
Sbjct: 451 -----YPHGSIVNGTVKAIIDSGVIVSLENDLEGYMHISQIDLPKGETLESV---LKVGE 502

Query: 991 T 991
           +
Sbjct: 503 S 503



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 142/325 (43%), Gaps = 52/325 (16%)

Query: 1094 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI---HEGDIVGGRISKILSGVG 1150
             VLS++KEK+ + L ++  +            D    F+   H GDI+ G ++ +     
Sbjct: 247  QVLSVDKEKRKVDLGIKQLE-----------GDTWYKFVEEYHVGDIIKGEVTTVKKF-- 293

Query: 1151 GLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
            G  V +   + G +H ++L  N  V++P        F  +     G +++CK+L+++   
Sbjct: 294  GAFVNVYEGVEGLIHVSDLSWNSHVNNP------NDFVKV-----GAYLECKILDMNVPE 342

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
            R    + L L+   D    +   D         K     +D +   +  G ++ +     
Sbjct: 343  R---KLTLGLKQVKDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNG-LEGICDISD 398

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F  ++  +       N+ D   E+ E E  I        +S++   +R++++ K +    
Sbjct: 399  FDWMNNTV-------NIKDYIKENEEVEMVI--------MSIDRDKQRIKLSYKHT---K 440

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
             S   + + +  H G IV G +K +   G+ +++EN +L G  H+S++     + +E++ 
Sbjct: 441  ESPWRVFDKAYPH-GSIVNGTVKAIIDSGVIVSLEN-DLEGYMHISQIDLPKGETLESVL 498

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMK 1414
            + GE     + +V++ KRRISL  +
Sbjct: 499  KVGESYPFVVREVNQVKRRISLSRR 523


>gi|375101674|ref|ZP_09747937.1| ribosomal protein S1 [Saccharomonospora cyanea NA-134]
 gi|374662406|gb|EHR62284.1| ribosomal protein S1 [Saccharomonospora cyanea NA-134]
          Length = 493

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 183/406 (45%), Gaps = 62/406 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G AV   
Sbjct: 41   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VAVGDAVEAL 94

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 95   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEPVRGTVIEVVKG--GLIL 145

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 146  DIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKNRN---N 187

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L+   + +G V ++ + G F+ L 
Sbjct: 188  VVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG 234

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q  
Sbjct: 235  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-- 291

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G 
Sbjct: 292  ---FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGG 347

Query: 1394 KVKVKILKVDKEKRRISLGMKSSY--FKNDA--DNLQMSSEEESDE 1435
            +V VK++ +D E+RRISL +K +   F  DA  D  Q     E DE
Sbjct: 348  EVMVKVIDIDLERRRISLSLKQANEGFTPDAEFDPTQYGMAAEYDE 393



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 156/393 (39%), Gaps = 46/393 (11%)

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           ++K++ V    T      AI  +     D  I  G I K+++    +      +G  P  
Sbjct: 12  QAKQVAVNDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSR 71

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLV 548
           EL +    +P+ +  VG  V+  ++       R+ LS      +    + ++L +    V
Sbjct: 72  ELSIKHDVDPAEVVAVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPV 131

Query: 549 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDN 607
            G V  V    +++ +  +G+    +P    A  +E   V       G E + +++ LD 
Sbjct: 132 RGTVIEVVKGGLILDIGLRGF----LP----ASLVEMRRVRDLQPYVGRELEAKIIELDK 183

Query: 608 ESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
             +N++LS +  L  +  ++ S+  + +    V  G V +I+  G FV  LG + G    
Sbjct: 184 NRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHV 242

Query: 667 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 726
           S+         S+   VGQ V   +LDV+ +  R++LSLK +        F + H     
Sbjct: 243 SELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----- 296

Query: 727 KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----H 781
                                 IG ++ GKV +   FG  V  EE  +    I+     H
Sbjct: 297 ---------------------AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERH 335

Query: 782 HQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
            ++    V+ G  +   ++D+    R + LSLK
Sbjct: 336 VEIPEQVVQVGGEVMVKVIDIDLERRRISLSLK 368



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 151/358 (42%), Gaps = 32/358 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKED 100

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 717
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T DA F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGFTPDAEF 380


>gi|387503162|ref|YP_005944391.1| 30S ribosomal protein S1 [Propionibacterium acnes 6609]
 gi|335277207|gb|AEH29112.1| 30S ribosomal protein S1 [Propionibacterium acnes 6609]
          Length = 498

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYLG--------- 183

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 47.8 bits (112), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YLGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|422455909|ref|ZP_16532578.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1]
 gi|315107101|gb|EFT79077.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1]
          Length = 498

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 179/408 (43%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+      F          L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEVVNVGDEFE--------ALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 150/352 (42%), Gaps = 39/352 (11%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS------EFEIVKPGKKFKVGAELVFR 427
           G +V G V+ VD    ++      + + P   +S       FE+V  G +F    E + +
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEF----EALVQ 108

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
               K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF
Sbjct: 109 QKEDKEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGF 164

Query: 488 APRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            P S  E+      +P    +VGQ ++ +I+      +++  SRR  L       R +  
Sbjct: 165 LPASLVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFL 220

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H + +  V +P   
Sbjct: 221 HQLQKGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV 277

Query: 599 FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRF 656
             ++L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR 
Sbjct: 278 --EVLDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRV 330

Query: 657 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
              + G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 331 EDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 40.8 bits (94), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 54/291 (18%)

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
           G +VSG V  V  + V++ +   GY ++G IP++ L+  ++H      V+  G EF+ L+
Sbjct: 53  GDIVSGTVVKVDRDEVLLDI---GYKTEGVIPSKELS--IKHDVDPFEVVNVGDEFEALV 107

Query: 604 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
              +++   L+LS K +    A    +Q+  +      + VV G V  +++ G  V    
Sbjct: 108 QQKEDKEGRLILSKKRAQYERAWGTIEQIKEE------DGVVTGTVIEVVKGGLIVDI-- 159

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 718
            L GF P S     +  DL    YVGQ + + I++++     + LS +++    T +   
Sbjct: 160 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVR 216

Query: 719 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 778
           Q +FL +     LQ                 G + +G V    +FG  V       V G 
Sbjct: 217 Q-NFLHQ-----LQK----------------GQIRKGVVSSIVNFGAFVDL---GGVDGL 251

Query: 779 ITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
           +   +L+          VE G  +   +LDV      V LSLK    D ++
Sbjct: 252 VHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQ 302


>gi|19552573|ref|NP_600575.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|62390242|ref|YP_225644.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|21324127|dbj|BAB98752.1| Ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|41325579|emb|CAF21368.1| 30S RIBOSOMAL PROTEIN S1 [Corynebacterium glutamicum ATCC 13032]
 gi|385143485|emb|CCH24524.1| 30S ribosomal protein S1 [Corynebacterium glutamicum K051]
          Length = 486

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  EVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL++ HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLEVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLEVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 405


>gi|319892466|ref|YP_004149341.1| 30S ribosomal protein S1p [Staphylococcus pseudintermedius HKU10-03]
 gi|317162162|gb|ADV05705.1| SSU ribosomal protein S1p [Staphylococcus pseudintermedius HKU10-03]
          Length = 394

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 99/174 (56%), Gaps = 6/174 (3%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  E ++ +    +++G V  +T+ G FI L   +D  V +S LS  +V+SPE+   IG 
Sbjct: 184  KKAELLQSIKAGDVIEGKVARLTNFGAFIDLG-GVDGLVHVSELSHEHVKSPEEVVSIGD 242

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             V  +V SVE  S+RV +++K  D+  +    I        GDIV G++ R+ S+G F+ 
Sbjct: 243  TVKVKVRSVEQDSERVSLSIK--DTLPSPFETIQ--EKYSEGDIVEGKVMRLASFGAFVE 298

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            I  + L GL H+SE+S  H+     +   G+ V+VKIL ++ E+ RISL +K++
Sbjct: 299  I-GSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 24/251 (9%)

Query: 288 QSKVVRVDRGLGLLLD------IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 341
           ++KV  V +G GL++D      IP++ +ST     I D ++ E R LE K +E    + R
Sbjct: 113 EAKVTEVVKG-GLVVDVGQRGFIPASLISTDY---IEDFSDYEGRVLELKVEELEPEKNR 168

Query: 342 -ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
            IL  + +E       KA   +        +K G V++GKV  + +FGA +   GGV  L
Sbjct: 169 VILSRKAVEAEENEKKKAELLQS-------IKAGDVIEGKVARLTNFGAFIDL-GGVDGL 220

Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 458
             +  +S   +  P +   +G  +  +V  V+  S+R++++ K TL      I   Y+E 
Sbjct: 221 VHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSEG 280

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
               I  G + ++   G FV   +G+QG    SE+       P  +   GQ V+ +I+  
Sbjct: 281 D---IVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGI 337

Query: 519 IPASRRINLSF 529
            P   RI+LS 
Sbjct: 338 NPEEERISLSI 348



 Score = 67.4 bits (163), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 10/170 (5%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
            E L  N  ++  V  V   G  + + ++    +  S +S  Y+E    +F    G+++  
Sbjct: 104  EKLENNETIEAKVTEVVKGGLVVDVGQR--GFIPASLISTDYIE----DFSDYEGRVLEL 157

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +V  +EP   RV ++ K  ++    + +   L ++  GD++ G++ R+ ++G FI +   
Sbjct: 158  KVEELEPEKNRVILSRKAVEAEENEKKKAELLQSIKAGDVIEGKVARLTNFGAFIDLGGV 217

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  GL HVSELS +HV + E +   G+ VKVK+  V+++  R+SL +K +
Sbjct: 218  D--GLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDT 265



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 145/354 (40%), Gaps = 28/354 (7%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +D+K G  + G+V  ++    +V   GG    + P+  +S + +    +  KVG E+   
Sbjct: 12  NDIKEGDKITGEVQQIEDKHVVVHINGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAY 71

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
           V  ++      T    L K KL    SYA   ++L         +T++ K G  V    G
Sbjct: 72  VTKIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDV--G 129

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 541
            +GF P S +  D   E  S Y  G+V++ ++    P   R+ LS   K     E++   
Sbjct: 130 QRGFIPASLISTDY-IEDFSDYE-GRVLELKVEELEPEKNRVILS--RKAVEAEENEKKK 185

Query: 542 ------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
                 +K G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 186 AELLQSIKAGDVIEGKVARLTNFGAFIDL---GGVDGLVHVSELSH--EHVKSPEEVVSI 240

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
           G     ++  ++ +S  + LS K +L +  + +    S      +V G V  +   G FV
Sbjct: 241 GDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSE---GDIVEGKVMRLASFGAFV 297

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
                L G    S+          +    GQ+V+  IL +N E  RI+LS+K +
Sbjct: 298 EIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 158/376 (42%), Gaps = 79/376 (21%)

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 159
           ++EG  +T  V+ IED   ++H     + G +P + L+    EN+   VK G  +   V 
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHINGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAYVT 73

Query: 160 -----------------RSIDRTRKVVYLSS---DPDTVSKCVTKDLKG-ISIDL----L 194
                            R ++  +   YL     + +T+   VT+ +KG + +D+     
Sbjct: 74  KIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDVGQRGF 133

Query: 195 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 254
           +P  ++ST           +   + + G V    ++   P  N             R++ 
Sbjct: 134 IPASLISTD---------YIEDFSDYEGRVLELKVEELEPEKN-------------RVIL 171

Query: 255 VDPTSRAVGLTLN----PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 310
              + +AV    N      LL +      +K GD+  + KV R+    G  +D+      
Sbjct: 172 ---SRKAVEAEENEKKKAELLQS------IKAGDVI-EGKVARL-TNFGAFIDLGGVD-- 218

Query: 311 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK---ASAFEGLVFT 367
               V +S+++ E V+  E+    G  V+V++          +  +K    S FE +   
Sbjct: 219 --GLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEK 276

Query: 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +S+   G +V+GKV+ + SFGA V+   G++ L  +  +S   I  PG+  + G  +  +
Sbjct: 277 YSE---GDIVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVK 333

Query: 428 VLGV--KSKRITVTHK 441
           +LG+  + +RI+++ K
Sbjct: 334 ILGINPEEERISLSIK 349



 Score = 41.6 bits (96), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 112/294 (38%), Gaps = 49/294 (16%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 600
           +K G  ++G V  +    VVV++    Y+ G IP   L+  H+E+A     V+K G E  
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHINGGKYN-GIIPISQLSTYHVENAN---EVVKVGDEIG 69

Query: 601 QLLVL-----DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
             +       +NE+ + +LS +   +   Q        +  N  +   V  +++ G  V 
Sbjct: 70  AYVTKIEVDEENETGSYILSKRK--LEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVD 127

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
              R  GF P S        D S   Y G+ +   + ++  E  R+ LS K       + 
Sbjct: 128 VGQR--GFIPASLISTDYIEDFSD--YEGRVLELKVEELEPEKNRVILSRKAVEAEENE- 182

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
                    ++K  +LQS K              G VIEGKV    +FG  +       V
Sbjct: 183 ---------KKKAELLQSIK-------------AGDVIEGKVARLTNFGAFIDL---GGV 217

Query: 776 YGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
            G +   +L+   V+S       G  ++  +  V +    V LS+K      F 
Sbjct: 218 DGLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFE 271


>gi|400291413|ref|ZP_10793431.1| 30S ribosomal protein S1 [Actinomyces naeslundii str. Howell 279]
 gi|399903470|gb|EJN86207.1| 30S ribosomal protein S1 [Actinomyces naeslundii str. Howell 279]
          Length = 484

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 187/411 (45%), Gaps = 64/411 (15%)

Query: 1017 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1066
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 203  -LQTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 261  EVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 47.0 bits (110), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 33/357 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+      AS
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPAS 373


>gi|325068715|ref|ZP_08127388.1| 30S ribosomal protein S1 [Actinomyces oris K20]
 gi|326773413|ref|ZP_08232696.1| ribosomal protein S1 [Actinomyces viscosus C505]
 gi|343522613|ref|ZP_08759579.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 175 str. F0384]
 gi|326636643|gb|EGE37546.1| ribosomal protein S1 [Actinomyces viscosus C505]
 gi|343402022|gb|EGV14528.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 175 str. F0384]
          Length = 484

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 187/411 (45%), Gaps = 64/411 (15%)

Query: 1017 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1066
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 203  -LQTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 261  EVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 33/357 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+      AS
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPAS 373


>gi|418036541|ref|ZP_12674957.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
            subsp. bulgaricus CNCM I-1519]
 gi|354687591|gb|EHE87671.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
            subsp. bulgaricus CNCM I-1519]
          Length = 401

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 134/265 (50%), Gaps = 45/265 (16%)

Query: 1181 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1235
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1236 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1269
                    T++D P K      H E IE+            L    +V+G V  +T  G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGS 212

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
              Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HVSE++  HVD    + 
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEIAYKHVDKPSDVL 326

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMK 1414
              G KVKVK+L +D  KRRISL +K
Sbjct: 327  TVGPKVKVKVLNIDPSKRRISLSIK 351



 Score = 70.9 bits (172), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 20/249 (8%)

Query: 288 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 344
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 345 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
             H E +     +  AFE +    S +  G VV+G+V  +  FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTDFGSFVDI-GGVDGLVHIS 226

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 462
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 463 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 520
             +  G +  +   G FV   +G+QG    SE+      +PS +  VG  VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDP 341

Query: 521 ASRRINLSF 529
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 34/199 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD+V GR+S++     G  V IG  + G VH +E+    V  P         D L     
Sbjct: 197  GDVVEGRVSRLTD--FGSFVDIG-GVDGLVHISEISYKHVDKP--------SDVLK---V 242

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++ +                  P    +    L+  
Sbjct: 243  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATSSLNEG 282

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             +++G VK++T+ G F+ ++  +   V +S ++  +V+ P     +G  V  +VL+++P 
Sbjct: 283  DVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPS 342

Query: 1315 SKRVEVTLKTSDSRTASQS 1333
             +R+ +++K  D   AS S
Sbjct: 343  KRRISLSIKQVDPENASSS 361



 Score = 45.4 bits (106), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 142/365 (38%), Gaps = 53/365 (14%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 538
           GV+G   R +   D          +G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTFKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 539 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 596 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 654
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  + + G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSFV 214

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 775 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 827
           + G +   ++A   V+        G  ++  +L++  ++R + LS+K V  +    +N  
Sbjct: 305 IQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVDPENASSSNDR 364

Query: 828 RQAQK 832
            +A++
Sbjct: 365 PRARR 369


>gi|329946785|ref|ZP_08294197.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526596|gb|EGF53609.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 484

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 187/411 (45%), Gaps = 64/411 (15%)

Query: 1017 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1066
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 203  -LQTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 261  EVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 47.8 bits (112), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 33/357 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+      AS
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPAS 373


>gi|227496060|ref|ZP_03926369.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434]
 gi|226834388|gb|EEH66771.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434]
          Length = 483

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 188/411 (45%), Gaps = 64/411 (15%)

Query: 1017 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1066
            P+ + V++IGS + +    D ++     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETMKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 203  -LQTLQKGQVRTGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 261  EVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL++ HV+  E + + GE+V VK++ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHISELAQRHVEVPEQVVKVGEEVFVKVIDIDLERRRISLSLKQA 365



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 152/349 (43%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERVKEE-DGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 317 IEGLVHISELAQRHVEVPEQVVKVGEEVFVKVIDIDLERRRISLSLKQA 365


>gi|320531284|ref|ZP_08032260.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136487|gb|EFW28459.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 484

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 187/411 (45%), Gaps = 64/411 (15%)

Query: 1017 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1066
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 203  -LQTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 261  EVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 151/349 (43%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365


>gi|422452099|ref|ZP_16528800.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2]
 gi|315108213|gb|EFT80189.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2]
          Length = 498

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.1 bits (113), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|386319260|ref|YP_006015423.1| 30S ribosomal protein S1 [Staphylococcus pseudintermedius ED99]
 gi|323464431|gb|ADX76584.1| ribosomal protein S1 [Staphylococcus pseudintermedius ED99]
          Length = 394

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 99/174 (56%), Gaps = 6/174 (3%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  E ++ +    +++G V  +T+ G FI L   +D  V +S LS  +V+SPE+   IG 
Sbjct: 184  KKAELLQSIKAGDVIEGKVARLTNFGAFIDLG-GVDGLVHVSELSHEHVKSPEEVVSIGD 242

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             V  +V SVE  S+RV +++K  D+  +    I        GDIV G++ R+ S+G F+ 
Sbjct: 243  TVKVKVRSVEQDSERVSLSIK--DTLPSPFETIQ--EKYSEGDIVEGKVMRLASFGAFVE 298

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            I  + L GL H+SE+S  H+     +   G+ V+VKIL ++ E+ RISL +K++
Sbjct: 299  I-GSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 73.9 bits (180), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 24/251 (9%)

Query: 288 QSKVVRVDRGLGLLLD------IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 341
           ++KV  V +G GL++D      IP++ +ST     I D ++ E R LE K +E    + R
Sbjct: 113 EAKVTEVVKG-GLVVDVGQRGFIPASLISTDY---IEDFSDYEGRVLELKVEELEPEKNR 168

Query: 342 -ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
            IL  + +E       KA   +        +K G V++GKV  + +FGA +   GGV  L
Sbjct: 169 VILSRKAVEAEENEKKKAELLQS-------IKAGDVIEGKVARLTNFGAFIDL-GGVDGL 220

Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 458
             +  +S   +  P +   +G  +  +V  V+  S+R++++ K TL      I   Y+E 
Sbjct: 221 VHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSEG 280

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
               I  G + ++   G FV   +G+QG    SE+       P  +   GQ V+ +I+  
Sbjct: 281 D---IVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGI 337

Query: 519 IPASRRINLSF 529
            P   RI+LS 
Sbjct: 338 NPEEERISLSI 348



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 10/170 (5%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
            E L  N  ++  V  V   G  + + ++    +  S +S  Y+E    +F    G+++  
Sbjct: 104  EKLENNETIEAKVTEVVKGGLVVDVGQR--GFIPASLISTDYIE----DFSDYEGRVLEL 157

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +V  +EP   RV ++ K  ++    + +   L ++  GD++ G++ R+ ++G FI +   
Sbjct: 158  KVEELEPEKNRVILSRKAVEAEENEKKKAELLQSIKAGDVIEGKVARLTNFGAFIDLGGV 217

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  GL HVSELS +HV + E +   G+ VKVK+  V+++  R+SL +K +
Sbjct: 218  D--GLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDT 265



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 145/354 (40%), Gaps = 28/354 (7%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +D+K G  + G+V  ++    +V   GG    + P+  +S + +    +  KVG E+   
Sbjct: 12  NDIKEGDKITGEVQQIEDKHVVVHVNGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAY 71

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
           V  ++      T    L K KL    SYA   ++L         +T++ K G  V    G
Sbjct: 72  VTKIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDV--G 129

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 541
            +GF P S +  D   E  S Y  G+V++ ++    P   R+ LS   K     E++   
Sbjct: 130 QRGFIPASLISTDY-IEDFSDYE-GRVLELKVEELEPEKNRVILS--RKAVEAEENEKKK 185

Query: 542 ------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
                 +K G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 186 AELLQSIKAGDVIEGKVARLTNFGAFIDL---GGVDGLVHVSELSH--EHVKSPEEVVSI 240

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
           G     ++  ++ +S  + LS K +L +  + +    S      +V G V  +   G FV
Sbjct: 241 GDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSE---GDIVEGKVMRLASFGAFV 297

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
                L G    S+          +    GQ+V+  IL +N E  RI+LS+K +
Sbjct: 298 EIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 158/376 (42%), Gaps = 79/376 (21%)

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 159
           ++EG  +T  V+ IED   ++H     + G +P + L+    EN+   VK G  +   V 
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHVNGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAYVT 73

Query: 160 -----------------RSIDRTRKVVYLSS---DPDTVSKCVTKDLKG-ISIDL----L 194
                            R ++  +   YL     + +T+   VT+ +KG + +D+     
Sbjct: 74  KIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDVGQRGF 133

Query: 195 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 254
           +P  ++ST           +   + + G V    ++   P  N             R++ 
Sbjct: 134 IPASLISTD---------YIEDFSDYEGRVLELKVEELEPEKN-------------RVIL 171

Query: 255 VDPTSRAVGLTLN----PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 310
              + +AV    N      LL +      +K GD+  + KV R+    G  +D+      
Sbjct: 172 ---SRKAVEAEENEKKKAELLQS------IKAGDVI-EGKVARL-TNFGAFIDLGGVD-- 218

Query: 311 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK---ASAFEGLVFT 367
               V +S+++ E V+  E+    G  V+V++          +  +K    S FE +   
Sbjct: 219 --GLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEK 276

Query: 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +S+   G +V+GKV+ + SFGA V+   G++ L  +  +S   I  PG+  + G  +  +
Sbjct: 277 YSE---GDIVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVK 333

Query: 428 VLGV--KSKRITVTHK 441
           +LG+  + +RI+++ K
Sbjct: 334 ILGINPEEERISLSIK 349



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 112/294 (38%), Gaps = 49/294 (16%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 600
           +K G  ++G V  +    VVV+V    Y+ G IP   L+  H+E+A     V+K G E  
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHVNGGKYN-GIIPISQLSTYHVENAN---EVVKVGDEIG 69

Query: 601 QLLVL-----DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
             +       +NE+ + +LS +   +   Q        +  N  +   V  +++ G  V 
Sbjct: 70  AYVTKIEVDEENETGSYILSKRK--LEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVD 127

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
              R  GF P S        D S   Y G+ +   + ++  E  R+ LS K       + 
Sbjct: 128 VGQR--GFIPASLISTDYIEDFSD--YEGRVLELKVEELEPEKNRVILSRKAVEAEENE- 182

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
                    ++K  +LQS K              G VIEGKV    +FG  +       V
Sbjct: 183 ---------KKKAELLQSIK-------------AGDVIEGKVARLTNFGAFIDL---GGV 217

Query: 776 YGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
            G +   +L+   V+S       G  ++  +  V +    V LS+K      F 
Sbjct: 218 DGLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFE 271


>gi|119717213|ref|YP_924178.1| 30S ribosomal protein S1 [Nocardioides sp. JS614]
 gi|119537874|gb|ABL82491.1| SSU ribosomal protein S1P [Nocardioides sp. JS614]
          Length = 490

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 16   VAVNDIGSEADFLAAIDETIKYFNDGDIVAGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 75

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +PSE+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 76   KHDVDPSEV------VAVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 122

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 123  QVKEEDGVVEGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVG--------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S       T             
Sbjct: 172  ------QTLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRHGFLTQ------------ 210

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 211  -LQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 268

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 269  DVDMDRERVSLSLKAT-----QEDPWQHFARTHQIGQIVPGKVTKLVPFGAFVRVEE-GI 322

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HV+  E + +  + V VKI+ +D E+RRISL +K +
Sbjct: 323  EGLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQA 370



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 146/354 (41%), Gaps = 29/354 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 41  GDIVAGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVAVGDEVEALVLQKED 100

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E     +  G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEQVKEEDG--VVEGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 157 LVEMRRVRDLQP----YVGQTLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRHGFLTQLQ 212

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 213 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 266

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  Q     A       +V G V  ++  G FVR    + 
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWQHF---ARTHQIGQIVPGKVTKLVPFGAFVRVEEGIE 323

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
           G    S+  +       +   V   V   I+D++ E  RI+LSLKQ+  ++T A
Sbjct: 324 GLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQANETATAA 377


>gi|365827220|ref|ZP_09369084.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 849 str. F0330]
 gi|365265226|gb|EHM94999.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 849 str. F0330]
          Length = 484

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 187/411 (45%), Gaps = 64/411 (15%)

Query: 1017 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1066
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 202

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 203  -LQTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 261  EVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 315

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 33/357 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+      AS
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPAS 373


>gi|86739768|ref|YP_480168.1| 30S ribosomal protein S1 [Frankia sp. CcI3]
 gi|86566630|gb|ABD10439.1| SSU ribosomal protein S1P [Frankia sp. CcI3]
          Length = 492

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 195/433 (45%), Gaps = 71/433 (16%)

Query: 1013 LSIKPSMLT----VSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH- 1061
            ++I PS  T    V++IGS   F    D +I     G  V G + KVD +  LL I    
Sbjct: 13   VTISPSPTTPQVAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGIIVKVDRDEVLLDIGYKT 72

Query: 1062 ---LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1118
               + ++   +    +P E+        +G  V   VL   KE K  RL+L   +     
Sbjct: 73   EGVIPSRELSIKHDVDPHEV------VSVGDHVEALVL--QKEDKEGRLILSKKR----- 119

Query: 1119 KTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1178
               + +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P 
Sbjct: 120  AQYERAWGTIEKLKDEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPY 177

Query: 1179 SGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1238
             G +               ++ K++E+ +      +V LS R+ L+   S   S+     
Sbjct: 178  VGRE---------------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF---- 215

Query: 1239 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1298
                     +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +  
Sbjct: 216  ---------LAQLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVV 265

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESY 1357
             +G+ V   VL V+   +RV ++LK +      Q      +  H +G +V G++ ++  +
Sbjct: 266  EVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPF 320

Query: 1358 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1417
            G F+ + +  + GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K + 
Sbjct: 321  GAFVRV-DEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA- 378

Query: 1418 FKNDADNLQMSSE 1430
              N+A  L +  E
Sbjct: 379  --NEATGLAVDGE 389



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDKE 110

Query: 523 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKDEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 222

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 813 LK 814
           LK
Sbjct: 375 LK 376



 Score = 40.8 bits (94), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKED 108

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKD-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 220

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA 378


>gi|427391803|ref|ZP_18886027.1| 30S ribosomal protein S1 [Actinobaculum massiliae ACS-171-V-Col2]
 gi|425731770|gb|EKU94583.1| 30S ribosomal protein S1 [Actinobaculum massiliae ACS-171-V-Col2]
          Length = 497

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 183/406 (45%), Gaps = 56/406 (13%)

Query: 1018 SMLTVSEIGSK-LLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1071
            S + V++IG +  L    D +I     G  V G + KVD++  LL I    +  +     
Sbjct: 12   SEIAVNDIGDEEALLAAVDKTIKYFNDGDIVEGTIVKVDHDEVLLDIGYKTEGVI----P 67

Query: 1072 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1131
            + E S   +      +    T   L + KE K  RL+L   +        + +   ++  
Sbjct: 68   SKELSIKHDVDPDDVVEVGDTIEALVLQKEDKEGRLLLSKKR-----AQYERAWKQIEKI 122

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
              E  +V G + +++ G  GL++ IG   +      E++ +    P  G +         
Sbjct: 123  KEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE--------- 171

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
                  ++ KV+E+ +      +V LS R+ L+   S   +D              +  L
Sbjct: 172  ------LEAKVIELDKNRN---NVVLSRRAWLEETQSQVRADF-------------LAGL 209

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
                I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V
Sbjct: 210  HKGQIREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGQKVNVEVLDV 268

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVG 1370
            +   +RV ++LK +      +    + +  H +G +V G++ ++  +G F+ +E+  + G
Sbjct: 269  DLDRERVSLSLKAT-----QEDPWQSFARTHAIGQVVPGKVTKIVPFGAFVRVED-GIEG 322

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            L H+SEL+  HVD  + + + GE + VK++ +D ++RRISL +K +
Sbjct: 323  LVHISELASHHVDTPDEVVKVGEDIFVKVIDIDLDRRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G + +G V ++ +FGA V   GGV  L  +  +S   I  P +   VG ++   VL V  
Sbjct: 212 GQIREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGQKVNVEVLDVDL 270

Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +R++++ K T      +   ++A      +  G +TKI   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQSFARTHAIGQ---VVPGKVTKIVPFGAFVRVEDGIEGLVHIS 327

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           EL       P  +  VG+ +  +++      RRI+LS 
Sbjct: 328 ELASHHVDTPDEVVKVGEDIFVKVIDIDLDRRRISLSL 365



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 38/222 (17%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           +++ LD   +N++LS +  L  +  Q+ +D  + +H   +  G V +I+  G FV  LG 
Sbjct: 175 KVIELDKNRNNVVLSRRAWLEETQSQVRADFLAGLHKGQIREGVVSSIVNFGAFVD-LGG 233

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+         S+   VGQ V   +LDV+ +  R++LSLK +       SF +
Sbjct: 234 VDGLVHVSELSWKHIDHPSEVVTVGQKVNVEVLDVDLDRERVSLSLK-ATQEDPWQSFAR 292

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
            H                           IG V+ GKV +   FG  V  E+   + G +
Sbjct: 293 TH--------------------------AIGQVVPGKVTKIVPFGAFVRVEDG--IEGLV 324

Query: 780 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 814
              +LA   V++       G  I   ++D+    R + LSLK
Sbjct: 325 HISELASHHVDTPDEVVKVGEDIFVKVIDIDLDRRRISLSLK 366


>gi|225022623|ref|ZP_03711815.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii ATCC
            33806]
 gi|305682064|ref|ZP_07404868.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
 gi|224944531|gb|EEG25740.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii ATCC
            33806]
 gi|305658537|gb|EFM48040.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
          Length = 493

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 185/412 (44%), Gaps = 64/412 (15%)

Query: 1016 KPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFI- 1068
            K   + +++IGS   F    D +I     G  V G V KVD++  LL I    +  + + 
Sbjct: 5    KAPQVAINDIGSPEEFLAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPVR 64

Query: 1069 ---LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1125
               +    +P E+ E      +G  +   VL+  KE K  RL+L   +        + + 
Sbjct: 65   ELSIKHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAW 111

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
              ++    + + V G + +++ G  GL++ IG   +      E++ +   DP  G     
Sbjct: 112  GAIEELKEKDEAVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG----- 164

Query: 1186 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1245
                      Q ++ K++E+ +      +V LS R+ L+   S   S+            
Sbjct: 165  ----------QQIEAKIIELDKQRN---NVVLSRRAWLEQTQSEVRSEF----------- 200

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
              +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V 
Sbjct: 201  --LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVSVGDEVT 257

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1364
              VL V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E
Sbjct: 258  VEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVE 312

Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
               + GL H+SEL++ HV+  + +  A E   VK++ +D E+RRISL +K +
Sbjct: 313  E-GIEGLVHISELAQRHVEVPDQVVNANEDAMVKVIDIDLERRRISLSLKQA 363



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVSVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  + +  +    +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNANEDAMVKVIDIDLERRRISLSL 360



 Score = 47.4 bits (111), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P+  +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPVRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP-- 489
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P  
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEAVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 490 ----RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
               R    LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H + + SV   G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVSV---GDE 255

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +     +     ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNANEDAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI ++     D  I  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 23  AIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPVRELSIKHDVDPDEVVEVGD 82

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            +   +++      R+ LS      +    + ++L +    V+G V  V    +++ +  
Sbjct: 83  QIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEAVTGTVIEVVKGGLILDIGL 142

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G + + +++ LD + +N++LS +  L  +  
Sbjct: 143 RGFLPASL--------VEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQS 194

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 195 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVSVG 253

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 254 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRVFARTH----------------------- 289

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-SGSVIQA------ 797
               +G ++ GKV +   FG  V  EE   + G +   +LA   VE    V+ A      
Sbjct: 290 ---AVGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAQRHVEVPDQVVNANEDAMV 344

Query: 798 AILDVAKAERLVDLSLK 814
            ++D+    R + LSLK
Sbjct: 345 KVIDIDLERRRISLSLK 361


>gi|170289126|ref|YP_001739364.1| RNA-binding S1 domain-containing protein [Thermotoga sp. RQ2]
 gi|170176629|gb|ACB09681.1| RNA binding S1 domain protein [Thermotoga sp. RQ2]
          Length = 543

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 116/521 (22%), Positives = 219/521 (42%), Gaps = 59/521 (11%)

Query: 331 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 390
           +YK G  + ++IL   + E       +    + L     D +    VK +V++    G  
Sbjct: 60  EYKVGENLTLQILNLNYEERSILSERRPVLRKTLEELRKDYEEKKPVKARVVSQTKGGYN 119

Query: 391 VQFPGGVKALCPLPH--MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSK 448
           V   G V A  P  H  +   + + P K+ +V   ++  ++  K     V  ++ L   K
Sbjct: 120 VLLKGVVSAFLPGSHSLLRRNDPI-PEKEIEV---IILEMVQTKRGPRIVVSRRALQDKK 175

Query: 449 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 508
           +    S  +  D  I  G +  I   G  V    GV+GF PRSEL  D    P  +   G
Sbjct: 176 IEEFFSEKKVGD--IVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTRISPEDIVKPG 233

Query: 509 QVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI 565
           Q +  +I+      + + LS    M  P    E+    +G +V+G  +V++ +    +V 
Sbjct: 234 QNITAKIIELDKEKKNVILSLKRLMPDPWEKVEEKY-PVGKVVNG--EVISIHPFGFFVR 290

Query: 566 AKGYSKGTIPTEHL-----ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 620
            +   +G +P   +        LE       ++K      +++ +D E+  L LS K + 
Sbjct: 291 LEPGVEGLVPRSEVFWGNTRKSLEEVVSAGDLVKV-----EVINVDKENRKLTLSYKKAK 345

Query: 621 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 680
            +  + +       + N+VV G V  II+ G FV     + GF P S+    +  +  + 
Sbjct: 346 GDPWENI---EDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEI 402

Query: 681 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 740
             +G+ V+  IL ++ E  +ITLS+K++  +  + +  +           L++       
Sbjct: 403 LKIGEKVKVKILKIDKENRKITLSIKRTQENPWERALKE-----------LETD------ 445

Query: 741 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL 800
                     S++ G + +  + GVVV  EE+ D+ GF+ ++ L  +  E+G V+   +L
Sbjct: 446 ----------SIVSGTIKKIVNSGVVVEVEEY-DLEGFVPNNHLL-SEPETGKVLNLVVL 493

Query: 801 DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK 841
            +   E    L  + +  ++  E   N +  KK  ++E+S+
Sbjct: 494 RIDPDEV---LGGRMILSEKRYEERKNIEEYKKMVEKESSQ 531



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 44/299 (14%)

Query: 1123 ISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
            + +  ++ F  E   GDIV G +  I +   G+ V+I   + G +  +EL          
Sbjct: 171  LQDKKIEEFFSEKKVGDIVEGTVKGISNA--GVEVEISEGVRGFIPRSEL---------- 218

Query: 1180 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1239
             YD  +  P      GQ +  K++E+ +  +   +V LSL+             L  D  
Sbjct: 219  SYD-TRISPEDIVKPGQNITAKIIELDKEKK---NVILSLKR------------LMPD-- 260

Query: 1240 TPGKHLEKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKE 1297
                  EK+E+  P   +V G V ++   G F+ L   ++  V  S +  G   +S E+ 
Sbjct: 261  ----PWEKVEEKYPVGKVVNGEVISIHPFGFFVRLEPGVEGLVPRSEVFWGNTRKSLEEV 316

Query: 1298 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1357
               G LV   V++V+  ++++ ++ K +        E       +V ++V G++  +   
Sbjct: 317  VSAGDLVKVEVINVDKENRKLTLSYKKAKGDPWENIE----DRYNVNNVVTGKVTGIIKQ 372

Query: 1358 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            G F+ +E   + G   VSE+S   +D    I + GEKVKVKILK+DKE R+I+L +K +
Sbjct: 373  GAFVELEE-GVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIKRT 430


>gi|433449333|ref|ZP_20412197.1| 30S ribosomal protein S1 [Weissella ceti NC36]
 gi|429538847|gb|ELA06885.1| 30S ribosomal protein S1 [Weissella ceti NC36]
          Length = 416

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 139/281 (49%), Gaps = 38/281 (13%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GDIV   +++++ G  GLVV +   + G V  + ++N  V D            L+ Y +
Sbjct: 113  GDIVEAPVTQVVKG--GLVVDVA-GVRGFVPASMIENRFVQD------------LNQY-K 156

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ ++ K++EI  T      + LS R  L+   S   S +               +L+  
Sbjct: 157  GQTIRAKIIEIDPT---ESRLILSRRDVLNEERSEALSRI-------------FNELAEG 200

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             +V+G V  +T+ G FI L   +D  V +S +S   V  P     +G  V  ++L ++P 
Sbjct: 201  DVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISHDRVSQPSDVLAVGDDVKVKILGLDPE 259

Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
             +R+ +++K +       +      N   G ++ G +KRV  +G F+ +    + GL HV
Sbjct: 260  KERISLSIKATQPGPWEAA----AENAPEGTVLEGTVKRVVDFGAFVEV-FPGVEGLVHV 314

Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            S+++  HV+N   +  AG+KV VK+L+V+ +K+R+SL +K+
Sbjct: 315  SQIAHKHVNNPADVLTAGDKVNVKVLEVNPDKQRLSLSIKA 355



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
            G+ +  +++ ++P   R+ ++ +   ++ R+ + S I N   L  GD+V G++ R+ ++G
Sbjct: 157  GQTIRAKIIEIDPTESRLILSRRDVLNEERSEALSRIFN--ELAEGDVVEGKVARMTNFG 214

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             FI +   +  GL HVSE+S D V     +   G+ VKVKIL +D EK RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHDRVSQPSDVLAVGDDVKVKILGLDPEKERISLSIKAT 270



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 278 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 337
           S    GDI  ++ V +V +G GL++D+         +V  S +    V+ L  +YK G  
Sbjct: 108 SKFNAGDIV-EAPVTQVVKG-GLVVDV----AGVRGFVPASMIENRFVQDL-NQYK-GQT 159

Query: 338 VRVRILGFRHLEGLAT----GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 393
           +R +I+     E         +L     E L    +++  G VV+GKV  + +FGA +  
Sbjct: 160 IRAKIIEIDPTESRLILSRRDVLNEERSEALSRIFNELAEGDVVEGKVARMTNFGAFIDL 219

Query: 394 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 451
            GGV  L  +  +S   + +P     VG ++  ++LG+  + +RI+++ K T      A 
Sbjct: 220 -GGVDGLVHVSEISHDRVSQPSDVLAVGDDVKVKILGLDPEKERISLSIKATQPGPWEAA 278

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
             +  E T   +  G + ++   G FV  + GV+G    S++       P+ +   G  V
Sbjct: 279 AENAPEGT---VLEGTVKRVVDFGAFVEVFPGVEGLVHVSQIAHKHVNNPADVLTAGDKV 335

Query: 512 KCRIMSSIPASRRINLSF 529
             +++   P  +R++LS 
Sbjct: 336 NVKVLEVNPDKQRLSLSI 353



 Score = 47.8 bits (112), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 153/390 (39%), Gaps = 64/390 (16%)

Query: 449 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--VQGFAPRSELGLDPGCEPSSMYH 506
           LA L S AE     +  G +  I+ +   +    G  V+G  P  EL  D   + + +  
Sbjct: 9   LAALDSVAEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPMRELTSDRDADVNDLVK 68

Query: 507 VGQVVKCRIMSSIPASRRINLSFMMKPTRVS-----EDDLVKL--GSLVSGVVDVVTPNA 559
           VG V+   ++S+I  S +   S+++   R+      E+   K   G +V   V  V    
Sbjct: 69  VGDVIDLVVVSTI-GSDKEGGSYLLSKRRLEARRAWEEIASKFNAGDIVEAPVTQVVKGG 127

Query: 560 VVVYVIA-KGYSKGTIPTEHLADHLEH---ATVMKSVIKPGYEFDQLLVLDNESSNLLLS 615
           +VV V   +G+   ++        L      T+   +I+          +D   S L+LS
Sbjct: 128 LVVDVAGVRGFVPASMIENRFVQDLNQYKGQTIRAKIIE----------IDPTESRLILS 177

Query: 616 AKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 673
            +  ++N   ++ L    + +    VV G V  +   G F+  LG + G    S+    +
Sbjct: 178 -RRDVLNEERSEALSRIFNELAEGDVVEGKVARMTNFGAFID-LGGVDGLVHVSEISHDR 235

Query: 674 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS 733
            +  S    VG  V+  IL ++ E  RI+LS+K +     +A+                 
Sbjct: 236 VSQPSDVLAVGDDVKVKILGLDPEKERISLSIKATQPGPWEAA----------------- 278

Query: 734 SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA-------G 786
              N  E         G+V+EG V    DFG  V  E    V G +   Q+A        
Sbjct: 279 -AENAPE---------GTVLEGTVKRVVDFGAFV--EVFPGVEGLVHVSQIAHKHVNNPA 326

Query: 787 ATVESGSVIQAAILDVAKAERLVDLSLKTV 816
             + +G  +   +L+V   ++ + LS+K +
Sbjct: 327 DVLTAGDKVNVKVLEVNPDKQRLSLSIKAL 356



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 153/360 (42%), Gaps = 43/360 (11%)

Query: 369 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           ++VK G VVKG+V+A+D +   IV   G GV+ + P+  ++           KVG  +  
Sbjct: 16  AEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPMRELTSDRDADVNDLVKVGDVIDL 75

Query: 427 RVLGVKSKRITVTHKKT-----LVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCF 477
            V+       T+   K      L K +L    ++ E   +     I    +T++ K G  
Sbjct: 76  VVVS------TIGSDKEGGSYLLSKRRLEARRAWEEIASKFNAGDIVEAPVTQVVKGGLV 129

Query: 478 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 537
           V    GV+GF P S +  +   +  + Y  GQ ++ +I+   P   R+ LS         
Sbjct: 130 VDVA-GVRGFVPASMI-ENRFVQDLNQYK-GQTIRAKIIEIDPTESRLILSRRDVLNEER 186

Query: 538 EDDLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK- 590
            + L ++      G +V G V  +T     + +   G   G +   H+++ + H  V + 
Sbjct: 187 SEALSRIFNELAEGDVVEGKVARMTNFGAFIDL---GGVDGLV---HVSE-ISHDRVSQP 239

Query: 591 -SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCN 646
             V+  G +   ++L LD E   + LS     I + Q  P +A+  +    +V+ G V  
Sbjct: 240 SDVLAVGDDVKVKILGLDPEKERISLS-----IKATQPGPWEAAAENAPEGTVLEGTVKR 294

Query: 647 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           +++ G FV     + G    S+       + +     G  V   +L+VN +  R++LS+K
Sbjct: 295 VVDFGAFVEVFPGVEGLVHVSQIAHKHVNNPADVLTAGDKVNVKVLEVNPDKQRLSLSIK 354


>gi|145224145|ref|YP_001134823.1| 30S ribosomal protein S1 [Mycobacterium gilvum PYR-GCK]
 gi|315444481|ref|YP_004077360.1| 30S ribosomal protein S1 [Mycobacterium gilvum Spyr1]
 gi|145216631|gb|ABP46035.1| SSU ribosomal protein S1P [Mycobacterium gilvum PYR-GCK]
 gi|315262784|gb|ADT99525.1| SSU ribosomal protein S1P [Mycobacterium gilvum Spyr1]
          Length = 481

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 187/414 (45%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 813 LK 814
           LK
Sbjct: 362 LK 363



 Score = 47.4 bits (111), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ   ++ D S   E
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQ---ANEDYSEEFE 374

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            +    K  M  S    G+ +          +W+EGF
Sbjct: 375 AW----KYGMADSYDDQGNYIFPEGFDADTNEWLEGF 407


>gi|256379526|ref|YP_003103186.1| 30S ribosomal protein S1 [Actinosynnema mirum DSM 43827]
 gi|255923829|gb|ACU39340.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827]
          Length = 495

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 188/414 (45%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++ P  + +++IG++  F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 11   AVAPKQVAINDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 70

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL   KE K  RL+L   +        + 
Sbjct: 71   SRELSIKHDVDPNEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQYER 117

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 118  AWGTIEALKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE- 174

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 175  --------------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 208

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ 
Sbjct: 209  ----LNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE 263

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 264  VTVEVLDVDMERERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 318

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            ++   + GL H+SEL+E HV+  E + + G+ V VK++ +D ++RRISL +K +
Sbjct: 319  VDE-GIEGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLSLKQA 371



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 155/358 (43%), Gaps = 32/358 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 42  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKED 101

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 102 KEGRLILSKKRAQYERAWGTIEALKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 157

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 158 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 213

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 214 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 267

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D E   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 268 VLDVDMERERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 323

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 717
            G    S+  +       +   VG  V   ++D++ +  RI+LSLKQ+    T D+ F
Sbjct: 324 EGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLSLKQANEGFTVDSEF 381



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 145/366 (39%), Gaps = 46/366 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 40  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQK 99

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P
Sbjct: 100 EDKEGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP 155

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 156 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 211

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 212 LQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 270

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ E  R++LSLK +        F + H                           IG ++
Sbjct: 271 VDMERERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 303

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  +E  +    I+     H ++    V+ G  +   ++D+    R 
Sbjct: 304 PGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRR 363

Query: 809 VDLSLK 814
           + LSLK
Sbjct: 364 ISLSLK 369


>gi|163841039|ref|YP_001625444.1| 30S ribosomal protein S1 [Renibacterium salmoninarum ATCC 33209]
 gi|162954515|gb|ABY24030.1| SSU ribosomal protein S1P [Renibacterium salmoninarum ATCC 33209]
          Length = 504

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 192/420 (45%), Gaps = 64/420 (15%)

Query: 1019 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1068
            ++ +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 28   VVAINDIGSAEDFLAAIDATIKYFNDGDLVEGIVVKVDRDEVLLDIGYKTEGVIPSRELS 87

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            +    +PSE+        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 88   IKHDVDPSEV------VSVGDEVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 134

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 135  EKVQEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 184

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 185  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 224

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 225  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGREVTVEV 280

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 281  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGRVTKLVPFGAFVRVED-G 334

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DA++ + 
Sbjct: 335  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGLDAESTEF 394



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 227 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGREVTVEVLEVDL 285

Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 286 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGRVTKLVPFGAFVRVEDGIEGLVHIS 342

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           EL +        +  VG  +  +++      RRI+LS 
Sbjct: 343 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSL 380



 Score = 45.4 bits (106), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 54  GDLVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGDEVEALVLTKED 113

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 114 KEGRLILSKKRAQYERAWGDIEKVQE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 169

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 170 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 225

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 226 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGREVTVE 279

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 280 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGRVTKLVPFGAFVRVEDGI 335

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 336 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 383


>gi|425737299|ref|ZP_18855572.1| 30S ribosomal protein S1 [Staphylococcus massiliensis S46]
 gi|425482647|gb|EKU49803.1| 30S ribosomal protein S1 [Staphylococcus massiliensis S46]
          Length = 393

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 16/204 (7%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +++G V  +T+ G FI L   +D  V +S LS  +V++P++   IG+ V  +V SVE  S
Sbjct: 196  VLEGKVARLTNFGAFIDLG-GVDGLVHVSELSHEHVKTPDEVVEIGQTVNVKVRSVEKDS 254

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ +++K  D+  +    I      + GD+V G++ R+ ++G F+ I    L GL H+S
Sbjct: 255  ERISLSIK--DTLPSPFETIK--EKFNEGDVVEGKVMRLANFGAFVEI-GAGLQGLVHIS 309

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
            E+S  H+     +   G+ V VKIL +D+E+ RISL +K++  K +++        ESDE
Sbjct: 310  EISHKHIGTPNEVLEPGDTVNVKILGIDQEEERISLSIKATEEKEESN--------ESDE 361

Query: 1436 AIEEVGSYNRSSLLENSSVAVQDM 1459
              E   SY  S      +  + DM
Sbjct: 362  --ETTQSYTTSQDSNEDNPTIGDM 383



 Score = 63.2 bits (152), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 68/116 (58%), Gaps = 2/116 (1%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
            GK++  +V  ++P + RV ++ K  ++    + +   L ++  GD++ G++ R+ ++G F
Sbjct: 151  GKVLELKVEELDPENNRVILSRKAVEAIENEKKKEQLLDSIQAGDVLEGKVARLTNFGAF 210

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            I +   +  GL HVSELS +HV   + +   G+ V VK+  V+K+  RISL +K +
Sbjct: 211  IDLGGVD--GLVHVSELSHEHVKTPDEVVEIGQTVNVKVRSVEKDSERISLSIKDT 264



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 113/251 (45%), Gaps = 24/251 (9%)

Query: 288 QSKVVRVDRGLGLLLD------IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 341
           ++KV  V +G GL++D      IP++ +ST     I D ++ + + LE K +E      R
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFIPASLISTDY---IEDFSDYDGKVLELKVEELDPENNR 167

Query: 342 -ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
            IL  + +E +     K    +        ++ G V++GKV  + +FGA +   GGV  L
Sbjct: 168 VILSRKAVEAIENEKKKEQLLDS-------IQAGDVLEGKVARLTNFGAFIDL-GGVDGL 219

Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 458
             +  +S   +  P +  ++G  +  +V  V+  S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVKTPDEVVEIGQTVNVKVRSVEKDSERISLSIKDTLPSPFETIKEKFNEG 279

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
               +  G + ++   G FV    G+QG    SE+       P+ +   G  V  +I+  
Sbjct: 280 D---VVEGKVMRLANFGAFVEIGAGLQGLVHISEISHKHIGTPNEVLEPGDTVNVKILGI 336

Query: 519 IPASRRINLSF 529
                RI+LS 
Sbjct: 337 DQEEERISLSI 347



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 82/169 (48%), Gaps = 14/169 (8%)

Query: 280 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 339
           ++ GD+  + KV R+    G  +D+          V +S+++ E V+  ++  + G  V 
Sbjct: 191 IQAGDVL-EGKVARL-TNFGAFIDLGGVD----GLVHVSELSHEHVKTPDEVVEIGQTVN 244

Query: 340 VRILGF-RHLEGLATGILKA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 396
           V++    +  E ++  I     S FE +         G VV+GKV+ + +FGA V+   G
Sbjct: 245 VKVRSVEKDSERISLSIKDTLPSPFETI---KEKFNEGDVVEGKVMRLANFGAFVEIGAG 301

Query: 397 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 443
           ++ L  +  +S   I  P +  + G  +  ++LG+  + +RI+++ K T
Sbjct: 302 LQGLVHISEISHKHIGTPNEVLEPGDTVNVKILGIDQEEERISLSIKAT 350


>gi|373852974|ref|ZP_09595774.1| ribosomal protein S1 [Opitutaceae bacterium TAV5]
 gi|391229292|ref|ZP_10265498.1| ribosomal protein S1 [Opitutaceae bacterium TAV1]
 gi|372475203|gb|EHP35213.1| ribosomal protein S1 [Opitutaceae bacterium TAV5]
 gi|391218953|gb|EIP97373.1| ribosomal protein S1 [Opitutaceae bacterium TAV1]
          Length = 552

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 107/186 (57%), Gaps = 18/186 (9%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            V G V+N+T+ G FI L   +D  V +S++S    V  P +    G  V   VL V+   
Sbjct: 358  VHGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDASQ 417

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNL----HVGDIVIGQIKRVESYGLFITIENTNLVGL 1371
            +R+ + +K        Q  I+  S++     +GD+V G + ++ S+G F+ +++  + GL
Sbjct: 418  QRISLGMK--------QLAIDPWSDIDSFFKIGDVVKGTVTKITSFGAFVDLKD-GIDGL 468

Query: 1372 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEE 1431
             H+S++SE+ +D ++ + + G++V  +++K+D+++RR+ L +K++ +  +    Q++SE 
Sbjct: 469  VHISQISEERIDKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAANYSPE----QLASET 524

Query: 1432 ESDEAI 1437
             + EA+
Sbjct: 525  AAYEAL 530



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 44/292 (15%)

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
            +N+ T   EG +  GR+   + G  GL++ IG   +               P S  D   
Sbjct: 88   ENILTKFPEGSVAVGRVKAKVKG--GLIISIGVDAFM--------------PASHID--- 128

Query: 1186 FDPLSGYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
              P    D+  GQ    KVL+I++  +   ++ LS R  ++   S    +L         
Sbjct: 129  IQPPKNLDQYVGQTYDFKVLKINQERK---NIVLSRRELIEQQRSEKRRNL--------- 176

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +E + P  + +G VKN+T  G FI L   +D  + ++++S G +  P +    G+ 
Sbjct: 177  ----LESIEPGQVRKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRIAHPSEMLKQGEE 231

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            +   ++ V    +RV + LK +      + E        VG  + G++  +  YG FI I
Sbjct: 232  IQVMIIEVNREKERVSLGLKQTTKNPWDEIE----QKFPVGAKIHGKVVNLVPYGAFIEI 287

Query: 1364 ENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            E   + GL H++E+S    ++    + R G+++   +L + K+ ++ISLG++
Sbjct: 288  E-PGVEGLVHITEMSWTKRINKPSEVLRVGQELDAVVLGIQKDDQKISLGLR 338



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 148/359 (41%), Gaps = 40/359 (11%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++PG V KG V  +  FGA +   G +  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 180 IEPGQVRKGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRIAHPSEMLKQGEEIQVMIIE 238

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V  + +R+++  K+T       I   +         HG +  +  +G F+    GV+G  
Sbjct: 239 VNREKERVSLGLKQTTKNPWDEIEQKFPVGAK---IHGKVVNLVPYGAFIEIEPGVEGLV 295

Query: 489 PRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK--- 543
             +E+       +PS +  VGQ +   ++      ++I+L    ++P      D+V+   
Sbjct: 296 HITEMSWTKRINKPSEVLRVGQELDAVVLGIQKDDQKISLGLRQLEPNPW---DMVRHNY 352

Query: 544 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 597
            +G+ V G V  +T     + +      +G     H++D      + H +    V+K G 
Sbjct: 353 PIGARVHGKVRNMTTYGAFIEL-----EEGIDGMVHVSDMSWTRKVNHPS---EVLKKGD 404

Query: 598 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGC 652
           E D + VLD ++S   +S         +QL  D      S      VV G V  I   G 
Sbjct: 405 EVDAI-VLDVDASQQRISL------GMKQLAIDPWSDIDSFFKIGDVVKGTVTKITSFGA 457

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           FV     + G    S+  + +   +      GQ V + ++ ++ +  R+ LS+K +  S
Sbjct: 458 FVDLKDGIDGLVHISQISEERIDKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAANYS 516



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 71/127 (55%), Gaps = 3/127 (2%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            +G+    +VL +    K + ++ +    +  S+   N L ++  G +  G +K +  +G 
Sbjct: 139  VGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLLESIEPGQVRKGVVKNITDFGA 198

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
            FI ++  +  GL H++++S   + +   + + GE+++V I++V++EK R+SLG+K +  K
Sbjct: 199  FIDLDGMD--GLLHITDMSWGRIAHPSEMLKQGEEIQVMIIEVNREKERVSLGLKQTT-K 255

Query: 1420 NDADNLQ 1426
            N  D ++
Sbjct: 256  NPWDEIE 262



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 96/491 (19%), Positives = 189/491 (38%), Gaps = 76/491 (15%)

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
           +L  S+F+ L       K G +V G +  +     +V   G  + + P     +   ++ 
Sbjct: 4   LLAESSFDNL-------KEGSIVPGVITEIRQNEVVVDIGGKSEGVIPANEFIDIGELQI 56

Query: 415 GKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 474
           G   +V  E +    G+         +K   K+   IL+ + E +   +  G +    K 
Sbjct: 57  GSTIEVYVEKLESKNGLPVLSFDKAEQK---KNWENILTKFPEGS---VAVGRVKAKVKG 110

Query: 475 GCFVRFYNGVQGFAPRSELGLDPGCEPSSM-YHVGQVVKCRIMS------SIPASRRINL 527
           G  +    GV  F P S + + P   P ++  +VGQ    +++       +I  SRR  +
Sbjct: 111 GLIISI--GVDAFMPASHIDIQP---PKNLDQYVGQTYDFKVLKINQERKNIVLSRRELI 165

Query: 528 SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 587
                  R +  + ++ G +  GVV  +T      ++   G       T+     + H +
Sbjct: 166 EQQRSEKRRNLLESIEPGQVRKGVVKNITDFGA--FIDLDGMDGLLHITDMSWGRIAHPS 223

Query: 588 VMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINS----AQQLPSDASHIHPNSVVHG 642
            M   +K G E   +++ ++ E   + L  K +  N      Q+ P  A        +HG
Sbjct: 224 EM---LKQGEEIQVMIIEVNREKERVSLGLKQTTKNPWDEIEQKFPVGAK-------IHG 273

Query: 643 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRI 701
            V N++  G F+     + G    ++    +R +  S+   VGQ + + +L +  +  +I
Sbjct: 274 KVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRINKPSEVLRVGQELDAVVLGIQKDDQKI 333

Query: 702 TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 761
           +L L+Q   +  D                    +HN         + IG+ + GKV    
Sbjct: 334 SLGLRQLEPNPWDMV------------------RHN---------YPIGARVHGKVRNMT 366

Query: 762 DFGVVVSFEEHSDVYGFITHHQLA------GATVESGSVIQAAILDVAKAERLVDLSLKT 815
            +G  +  EE  D    ++              ++ G  + A +LDV  +++ + L +K 
Sbjct: 367 TYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDASQQRISLGMKQ 426

Query: 816 VFIDRFREANS 826
           + ID + + +S
Sbjct: 427 LAIDPWSDIDS 437


>gi|25028013|ref|NP_738067.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
 gi|259506404|ref|ZP_05749306.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
 gi|23493296|dbj|BAC18267.1| putative 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
 gi|259166011|gb|EEW50565.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
          Length = 485

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+        +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEV------VQVGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL++ HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVTVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVQVGDQIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVTVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|404443511|ref|ZP_11008680.1| 30S ribosomal protein S1 [Mycobacterium vaccae ATCC 25954]
 gi|403655333|gb|EJZ10196.1| 30S ribosomal protein S1 [Mycobacterium vaccae ATCC 25954]
          Length = 480

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 187/414 (45%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            SI    + +++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SITSPQVAINDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 813 LK 814
           LK
Sbjct: 362 LK 363



 Score = 47.8 bits (112), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ   ++ D S   E
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQ---ANEDYSEEFE 374

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            +    K  M  S    G+ +          +W+EGF
Sbjct: 375 AW----KYGMADSYDDQGNYIFPEGFDADTNEWLEGF 407


>gi|303232665|ref|ZP_07319350.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4]
 gi|302481151|gb|EFL44226.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4]
          Length = 391

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 179/391 (45%), Gaps = 64/391 (16%)

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGK 1089
             D   G  VTG V K++++  LL I       + A+   +     P +L        +G 
Sbjct: 29   TDFDEGDLVTGTVVKIEHDEVLLDIGFKSEGVIPARELTIRKDVNPEDL------VSLGD 82

Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILS 1147
             +   VL   KE K  RL+L       S K  +       ++     G  V G + +++ 
Sbjct: 83   TIEALVL--QKEDKEGRLIL-------SKKRAEYERAWKAVEEKFKAGVNVEGEVIEVVK 133

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            G  GL++ IG  L G +            P S  D  +   LS +  G+ ++ +V+E+ R
Sbjct: 134  G--GLILDIG--LRGFL------------PASLVDLRRVKDLSAF-MGERIESRVIEMDR 176

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                  +V LS R  L+       S++             ++ L P M ++G V ++   
Sbjct: 177  N---RNNVVLSRRVVLEAARKAERSEI-------------LDKLKPGMKLKGTVSSIVDF 220

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TS 1325
            G F+ L   +D  + +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK  T 
Sbjct: 221  GAFVDLG-GIDGLIHISELSWNHVNQPSEVVKVGQEVEVQVLDVDLNRERISLGLKQTTE 279

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
            D   A       +    +G I+ G++ ++ ++G F+ +    + GL H+SE+S+ HVD  
Sbjct: 280  DPWRAL------IKKYPIGAIIEGKVTKLVTFGAFVDL-GDGVEGLVHISEMSKQHVDAP 332

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + + G+ V+VK+++VD E+RRISL MK++
Sbjct: 333  AQVCKVGDTVQVKVMEVDLERRRISLSMKAA 363



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 6/172 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +KPGM +KG V ++  FGA V   GG+  L  +  +S   + +P +  KVG E+  +VL 
Sbjct: 204 LKPGMKLKGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNQPSEVVKVGQEVEVQVLD 262

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +RI++  K+T      A++  Y       I  G +TK+   G FV   +GV+G  
Sbjct: 263 VDLNRERISLGLKQTTEDPWRALIKKYPIGA---IIEGKVTKLVTFGAFVDLGDGVEGLV 319

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
             SE+       P+ +  VG  V+ ++M      RRI+LS       + +DD
Sbjct: 320 HISEMSKQHVDAPAQVCKVGDTVQVKVMEVDLERRRISLSMKAAAETLGQDD 371



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 147/368 (39%), Gaps = 56/368 (15%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G + KIE     +      +G  P  EL +     P  +  +G  ++  ++      
Sbjct: 36  LVTGTVVKIEHDEVLLDIGFKSEGVIPARELTIRKDVNPEDLVSLGDTIEALVLQKEDKE 95

Query: 523 RRINLSFMM----KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
            R+ LS       +  +  E+   K G  V G V  V    +++ +  +G+    +P   
Sbjct: 96  GRLILSKKRAEYERAWKAVEEKF-KAGVNVEGEVIEVVKGGLILDIGLRGF----LPA-S 149

Query: 579 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 637
           L D L     + + +    E  +++ +D   +N++LS +  L  + +   S+    + P 
Sbjct: 150 LVD-LRRVKDLSAFMGERIE-SRVIEMDRNRNNVVLSRRVVLEAARKAERSEILDKLKPG 207

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
             + G V +I++ G FV  LG + G    S+         S+   VGQ V   +LDV+  
Sbjct: 208 MKLKGTVSSIVDFGAFVD-LGGIDGLIHISELSWNHVNQPSEVVKVGQEVEVQVLDVDLN 266

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVIE 754
             RI+L LKQ+                              +E  W   ++ + IG++IE
Sbjct: 267 RERISLGLKQT------------------------------TEDPWRALIKKYPIGAIIE 296

Query: 755 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAER 807
           GKV +   FG  V   +   V G +   +++   V++       G  +Q  +++V    R
Sbjct: 297 GKVTKLVTFGAFVDLGDG--VEGLVHISEMSKQHVDAPAQVCKVGDTVQVKVMEVDLERR 354

Query: 808 LVDLSLKT 815
            + LS+K 
Sbjct: 355 RISLSMKA 362


>gi|422437824|ref|ZP_16514668.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1]
 gi|422524653|ref|ZP_16600662.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2]
 gi|422532624|ref|ZP_16608570.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1]
 gi|313791764|gb|EFS39875.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1]
 gi|315077524|gb|EFT49582.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2]
 gi|327452888|gb|EGE99542.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1]
          Length = 498

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 172/383 (44%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V+G V KVD +  LL I       + ++   +    +P E+       ++G  +   
Sbjct: 53   GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEV------VNVGDEI--E 104

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
             L   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL+V
Sbjct: 105  ALVQQKEDKEGRLILSKKR-----AQYERAWGTIEQIKEEDGVVTGTVIEVVKG--GLIV 157

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 158  DIGLRGFLPASLVEMRRVRDLQPYVG---------------QEIEAKIIELDKNRN---N 199

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S    +              +  L    I +G V ++ + G F+ L 
Sbjct: 200  VVLSRRAWLEQTQSEVRQNF-------------LHQLQKGQIRKGVVSSIVNFGAFVDLG 246

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      +  
Sbjct: 247  -GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKAT-----QEDP 300

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                + LH +G IV G++ ++  +G F+ +E+  + GL HVSEL+E HV+  E +    +
Sbjct: 301  WQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAERHVEIPEQVVSVND 359

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
             V VKI+ +D ++RRISL +K +
Sbjct: 360  DVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|383831036|ref|ZP_09986125.1| ribosomal protein S1 [Saccharomonospora xinjiangensis XJ-54]
 gi|383463689|gb|EID55779.1| ribosomal protein S1 [Saccharomonospora xinjiangensis XJ-54]
          Length = 493

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 175/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G AV   
Sbjct: 41   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VAVGDAVEAL 94

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 95   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEPVRGTVIEVVKG--GLIL 145

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 146  DIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKNRN---N 187

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L+   + +G V ++ + G F+ L 
Sbjct: 188  VVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG 234

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q  
Sbjct: 235  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-- 291

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G 
Sbjct: 292  ---FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGG 347

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +V VK++ +D E+RRISL +K +
Sbjct: 348  EVMVKVIDIDLERRRISLSLKQA 370



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 145/362 (40%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 43  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKEDKE 102

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGF----LP---- 154

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 155 ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKG 214

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 215 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 273

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 274 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 306

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  EE  +    I+     H ++    V+ G  +   ++D+    R + LS
Sbjct: 307 TKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLS 366

Query: 813 LK 814
           LK
Sbjct: 367 LK 368



 Score = 47.8 bits (112), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 150/358 (41%), Gaps = 32/358 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKED 100

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 717
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T D  F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGFTPDTEF 380


>gi|403515139|ref|YP_006655959.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
 gi|403080577|gb|AFR22155.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
          Length = 403

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDR 258

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +++K ++     Q+     ++LH GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLHEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 14/173 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDN 256

Query: 434 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 487
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLHEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S  D
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSSD 362



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGA 213

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            FI +   +  GL H+SE+S  HVD    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 34/197 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++ +                  P    +   DL   
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATADLHEG 283

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1315 SKRVEVTLKTSDSRTAS 1331
             +R+ +++K +DS  +S
Sbjct: 344  DRRISLSIKAADSNASS 360



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 134/320 (41%), Gaps = 36/320 (11%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVT 120

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 523
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 524 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   +H 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LHE 282

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 697 ETGRITLSLK--QSCCSSTD 714
              RI+LS+K   S  SS+D
Sbjct: 343 SDRRISLSIKAADSNASSSD 362


>gi|302787034|ref|XP_002975287.1| hypothetical protein SELMODRAFT_415455 [Selaginella moellendorffii]
 gi|300156861|gb|EFJ23488.1| hypothetical protein SELMODRAFT_415455 [Selaginella moellendorffii]
          Length = 312

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 19/218 (8%)

Query: 981  NLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1039
            N    + +GQTV A+I++K       + +   +LS++PS L  ++    ++  E  V+I 
Sbjct: 51   NPLRKYSVGQTVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVITFE-TVTIE 109

Query: 1040 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT---GHVL 1096
            Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F +     K+VT    H+ 
Sbjct: 110  QSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFLK--STSKSVTCSSCHIR 167

Query: 1097 SINKEKKLLRLVLRP-----FQDG--ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1149
            S+N E+K + L L P     F +G  +  + +D+           G  + G +  ++   
Sbjct: 168  SVNHERKQVDLSLHPKATSLFTEGQFVRCRVLDLKRPGRGEM---GLELSGFVKNVME-- 222

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
             G  V + P L  R+    L N  V +P   +  G+ D
Sbjct: 223  KGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGKVD 260



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 48/134 (35%)

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
            + EGQFV+C+VL++ R  RG   +ELS                                 
Sbjct: 188  FTEGQFVRCRVLDLKRPGRGEMGLELS--------------------------------- 214

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
                   G+VKNV  KGCF++LS  L+A++ L NLS+ +V++P + FP GK        V
Sbjct: 215  -------GFVKNVMEKGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGK--------V 259

Query: 1312 EPLSKRVEVTLKTS 1325
            +  +KR+ + +K S
Sbjct: 260  DAETKRISLGMKAS 273



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 121/286 (42%), Gaps = 48/286 (16%)

Query: 1181 YDEGQFDPLSGYDEGQFVKCKVL---EISRTVRGTFHVELSLR-SSLDGMSSTNSSDLST 1236
            Y EG  +PL  Y  GQ V+ K+L   + SR  R    ++LSLR S L G      +D + 
Sbjct: 47   YREG--NPLRKYSVGQTVRAKILSKRKTSRKHRNAATLDLSLRPSELAG------NDAAC 98

Query: 1237 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG------Y 1290
             V T        E ++    V  YV+ V     +++LS  L   + + + SD       +
Sbjct: 99   SVIT-------FETVTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERF 151

Query: 1291 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL--------H 1342
            ++S  K        +  + SV    K+V+++L    +   ++ +      L         
Sbjct: 152  LKSTSKSVTCS---SCHIRSVNHERKQVDLSLHPKATSLFTEGQFVRCRVLDLKRPGRGE 208

Query: 1343 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1402
            +G  + G +K V   G F+ + + +L     +  LS   V N   ++  G        KV
Sbjct: 209  MGLELSGFVKNVMEKGCFVVL-SPSLEARIQLKNLSNSFVQNPAEMFPPG--------KV 259

Query: 1403 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSL 1448
            D E +RISLGMK+SY   +     + + EE     ++   Y R+SL
Sbjct: 260  DAETKRISLGMKASYLTPEDG---IDTMEEEGRLQQKRSYYRRTSL 302


>gi|266623563|ref|ZP_06116498.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
            hathewayi DSM 13479]
 gi|288864643|gb|EFC96941.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
            hathewayi DSM 13479]
          Length = 367

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 103/190 (54%), Gaps = 17/190 (8%)

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E  E + P  +V+G +KNVT  G FI L    D  + +S +S G VESP+K F  G+ + 
Sbjct: 186  ELFERIHPGDVVEGTIKNVTDFGAFIDLG-GADGLLHISEMSWGRVESPKKVFKAGEKM- 243

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
             RVL  +    ++ ++LK  ++     + +   +    G++V+G++ R+  +G F+ +E 
Sbjct: 244  -RVLIKDINGDKIALSLKFPETNPWKDAAVKYAA----GNVVVGRVARMTDFGAFVELE- 297

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
              +  L HVS++S DHVD    +   G++++ K++  +++ R+ISL MK+         L
Sbjct: 298  PGVDALLHVSQISRDHVDKPSDVLSIGQEIEAKVVDFNEDDRKISLSMKA---------L 348

Query: 1426 QMSSEEESDE 1435
            QM    + DE
Sbjct: 349  QMQDMAQVDE 358



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 22/255 (8%)

Query: 294 VDRGLGLLLD-----IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
           +D GL ++++     IP++ VS      +S  A++E+   E    E +  R RI+G R  
Sbjct: 118 LDGGLSVVVEGARVFIPASLVSDTYEKDLSKYADQEI---EFVITEFNPKRRRIIGDRKQ 174

Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
             +A    + +  +  +F    + PG VV+G +  V  FGA +   GG   L  +  MS 
Sbjct: 175 LMVA----RRAEMQKELFER--IHPGDVVEGTIKNVTDFGAFIDL-GGADGLLHISEMSW 227

Query: 409 FEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 468
             +  P K FK G ++   +  +   +I ++ K             YA      +  G +
Sbjct: 228 GRVESPKKVFKAGEKMRVLIKDINGDKIALSLKFPETNPWKDAAVKYAAGN---VVVGRV 284

Query: 469 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
            ++   G FV    GV      S++  D   +PS +  +GQ ++ +++      R+I+LS
Sbjct: 285 ARMTDFGAFVELEPGVDALLHVSQISRDHVDKPSDVLSIGQEIEAKVVDFNEDDRKISLS 344

Query: 529 F----MMKPTRVSED 539
                M    +V ED
Sbjct: 345 MKALQMQDMAQVDED 359



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 35/189 (18%)

Query: 633 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
            IHP  VV G + N+ + G F+  LG   G    S+   G+     K +  G+ +R  I 
Sbjct: 190 RIHPGDVVEGTIKNVTDFGAFID-LGGADGLLHISEMSWGRVESPKKVFKAGEKMRVLIK 248

Query: 693 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 752
           D+N +  +I LSLK                         +++    + +K+      G+V
Sbjct: 249 DINGD--KIALSLK-----------------------FPETNPWKDAAVKYA----AGNV 279

Query: 753 IEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAER 807
           + G+V    DFG  V  E   D    ++     H       +  G  I+A ++D  + +R
Sbjct: 280 VVGRVARMTDFGAFVELEPGVDALLHVSQISRDHVDKPSDVLSIGQEIEAKVVDFNEDDR 339

Query: 808 LVDLSLKTV 816
            + LS+K +
Sbjct: 340 KISLSMKAL 348



 Score = 41.6 bits (96), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 625 QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           Q L      I    +V G V ++ E    +    +  G  PR++  D Q  DL+    VG
Sbjct: 8   QMLEESLKTIRTGEIVTGKVIDVKEDEIVLNIGYKSDGIIPRNEYTDDQNLDLTTVVSVG 67

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASF---MQEHFLLEEKIAML 731
             + + ++ VN   G++ LS K+      +       + H +L  K+A +
Sbjct: 68  DEMEAKVIKVNDGEGQVALSYKRLAADRGNKRLEEAFENHEVLTAKVAAV 117


>gi|296129804|ref|YP_003637054.1| RNA binding S1 domain-containing protein [Cellulomonas flavigena DSM
            20109]
 gi|296021619|gb|ADG74855.1| RNA binding S1 domain protein [Cellulomonas flavigena DSM 20109]
          Length = 492

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 193/425 (45%), Gaps = 68/425 (16%)

Query: 1016 KPS--MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            KP+   + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 8    KPASPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 67

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P E+        +G AV   VL   KE K  RL+L   +        + 
Sbjct: 68   SRELSIKHDVDPGEV------VKVGDAVEALVL--QKEDKEGRLILSKKR-----AQYER 114

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 115  AWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 171

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+    T S   ST + T   
Sbjct: 172  --------------IEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT--- 208

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                   L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ 
Sbjct: 209  -------LQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE 260

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ 
Sbjct: 261  VTVEVLEVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVR 315

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY--FKN 1420
            +E+  + GL H+SEL+  HV+  E + + G+ V VK++ +D E+RRISL +K +   F  
Sbjct: 316  VED-GIEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQANEGFDP 374

Query: 1421 DADNL 1425
            ++D+ 
Sbjct: 375  ESDDF 379



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLE 267

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +     P  +  VG  V  +++      RRI+LS 
Sbjct: 325 HISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSL 365



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 152/349 (43%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V PG+  KVG  +   VL  + 
Sbjct: 39  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDAVEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 265 VLEVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 319

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 IEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQA 368


>gi|120404330|ref|YP_954159.1| 30S ribosomal protein S1 [Mycobacterium vanbaalenii PYR-1]
 gi|119957148|gb|ABM14153.1| SSU ribosomal protein S1P [Mycobacterium vanbaalenii PYR-1]
          Length = 481

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 187/414 (45%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 146/366 (39%), Gaps = 46/366 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LTKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRR 357

Query: 809 VDLSLK 814
           + LSLK
Sbjct: 358 ISLSLK 363



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ   ++ D S   E
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQ---ANEDYSEEFE 374

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            +    K  M  S    G+ +          +W+EGF
Sbjct: 375 AW----KYGMADSYDDQGNYIFPEGFDADTNEWLEGF 407


>gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
 gi|256843084|ref|ZP_05548572.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
 gi|256850264|ref|ZP_05555693.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
 gi|262046344|ref|ZP_06019306.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
 gi|293379767|ref|ZP_06625899.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
 gi|295692880|ref|YP_003601490.1| 30S ribosomal protein s1 [Lactobacillus crispatus ST1]
 gi|423318778|ref|ZP_17296655.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
 gi|423321585|ref|ZP_17299456.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
 gi|227861336|gb|EEJ68966.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
 gi|256614504|gb|EEU19705.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
 gi|256712901|gb|EEU27893.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
 gi|260573215|gb|EEX29773.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
 gi|290923676|gb|EFE00547.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
 gi|295030986|emb|CBL50465.1| 30S Ribosomal protein S1 [Lactobacillus crispatus ST1]
 gi|405591865|gb|EKB65324.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
 gi|405594274|gb|EKB67691.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
          Length = 402

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +V+G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDR 258

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +++K ++     Q+     ++L+ GDI  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDIFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQSVKVKVLNIDPSDRRISLSIKAA 354



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 14/170 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G VV+GKV  + +FGA +   GGV  L  +  +S   + KP    KVG ++  +V+G+ +
Sbjct: 198 GDVVEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDN 256

Query: 434 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 487
            R  I+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDIFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 537
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPSDRRISLSIKAADSNAS 359



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD+V G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGA 213

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            FI +   +  GL H+SE+S  HVD    + + G+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 34/199 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD+V G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVVEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKP--------SDVLK---V 243

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++ +                  P    +   DL+  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATADLNEG 283

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             I +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPS 343

Query: 1315 SKRVEVTLKTSDSRTASQS 1333
             +R+ +++K +DS  +S++
Sbjct: 344  DRRISLSIKAADSNASSEN 362



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 133/317 (41%), Gaps = 34/317 (10%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           ++VKPG KFK    LV R  G   +        T +K + A      +  D     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEDGNAVEGTVT 120

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 523
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLIVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 524 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R+ LS   +++  R    D V     +G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             +  G V ++   G FV     + G    S+  +      S    VGQSV+  +L+++ 
Sbjct: 283 GDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDP 342

Query: 697 ETGRITLSLKQSCCSST 713
              RI+LS+K +  +++
Sbjct: 343 SDRRISLSIKAADSNAS 359


>gi|227495256|ref|ZP_03925572.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436]
 gi|226831708|gb|EEH64091.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436]
          Length = 481

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 182/411 (44%), Gaps = 62/411 (15%)

Query: 1016 KPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1069
            +P  + V++IGS+  L    D +I     G  V G V KVD++  LL I    K +  IL
Sbjct: 6    QPEQIAVNDIGSREDLIAAIDATIKYFKEGDIVEGTVVKVDHDEVLLDIG--YKTEGVIL 63

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSI-NKEKKLLRLVLRPFQDGISDKTVDISN--D 1126
                        +    IG  V   VL + +KE +LL          +S K         
Sbjct: 64   SRELSIKHDIAPEDIVKIGDKVEALVLQMEDKEGRLL----------LSKKRAQYERAWG 113

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 114  TIEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 167

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS RS L+   S   ++             
Sbjct: 168  -----------LEAKIIELDKNRN---NVVLSRRSYLEQTQSEVRTNF------------ 201

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 202  -LHTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPAEVVEVGDEVTV 259

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 260  EVLEVDMSRERVSLSLKAT-----MEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 314

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL++ H++  E + + G+   VKI+ +D E+RRISL +K +
Sbjct: 315  -GIEGLVHISELAQRHIEAPEQVVKVGDGAFVKIIDIDLERRRISLSLKQA 364



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 148/350 (42%), Gaps = 31/350 (8%)

Query: 372 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
           K G +V+G V+ VD    ++      + +     +S    + P    K+G ++   VL +
Sbjct: 33  KEGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDIAPEDIVKIGDKVEALVLQM 92

Query: 432 KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 489
           + K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P
Sbjct: 93  EDKEGRLLLSKKRAQYERAWGTIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLP 148

Query: 490 RS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 541
            S  E+       P    ++G+ ++ +I+      +++  SRR  L       R +    
Sbjct: 149 ASLVEMRRVRDLAP----YIGRELEAKIIELDKNRNNVVLSRRSYLEQTQSEVRTNFLHT 204

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD 600
           ++ G + SGVV  +      V +   G   G +    L+  H++H      V++ G E  
Sbjct: 205 LQKGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPA---EVVEVGDEVT 258

Query: 601 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 658
            ++L +D     + LS K ++ +  Q      +  H    VV G V  ++  G FVR   
Sbjct: 259 VEVLEVDMSRERVSLSLKATMEDPWQAF----ARTHAIGQVVPGKVTKLVPFGAFVRVED 314

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            + G    S+          +   VG      I+D++ E  RI+LSLKQ+
Sbjct: 315 GIEGLVHISELAQRHIEAPEQVVKVGDGAFVKIIDIDLERRRISLSLKQA 364


>gi|373486910|ref|ZP_09577581.1| SSU ribosomal protein S1P [Holophaga foetida DSM 6591]
 gi|372010863|gb|EHP11466.1| SSU ribosomal protein S1P [Holophaga foetida DSM 6591]
          Length = 585

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 14/210 (6%)

Query: 1240 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEF 1298
            TP   +E  E  +   IV G V+N+T  G F+ L   +D  + +S+ S    ++ P +  
Sbjct: 378  TPNPWMEVAEKYNIGQIVTGTVRNITEFGAFVELEEGIDGLIHVSDFSWTKKIKHPGEVV 437

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
              G  V  +VL+++PL++R+ + +K  +     Q          VGD V G+I R+  +G
Sbjct: 438  KKGDSVTAKVLNLDPLNQRMSLGVKQMEPNVWEQF----FDGHRVGDTVTGKIARLTDFG 493

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
             F+ + +  + GL HVSELS   V++I+  +   +++ +KI+K+D  + RI L +K   +
Sbjct: 494  AFVDLGD-GIEGLVHVSELSRKRVEDIQKEFTTAQELTMKIVKLDPTEHRIGLSVKQ--Y 550

Query: 1419 KNDADNLQMSSEEESDEAIEEVGSYNRSSL 1448
            + D +  +M      DEA  ++  + +++L
Sbjct: 551  ETDLEKGEM------DEARAKMEPFKKATL 574



 Score = 67.4 bits (163), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 7/170 (4%)

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E +  L    +V+G VKN+T  G FI L   +D  + ++++S G +  P + F +G  V 
Sbjct: 212  ETLAGLEEGKLVEGTVKNITEYGAFIDLG-GVDGLLHITDMSWGRLNHPSEMFQVGDKVE 270

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
              +L  +  ++RV +  K   +      E     N  V     G++  +  YG F+ +E 
Sbjct: 271  VAILKYDKDTERVSLGYKQKFADPWLTVEERFPMNASVK----GKVVSITDYGAFVELE- 325

Query: 1366 TNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              + GL HVSE+S    V + + +   G+ V+  IL+VD E RRISLGMK
Sbjct: 326  PGVEGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQVDVESRRISLGMK 375



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 148/352 (42%), Gaps = 26/352 (7%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           T + ++ G +V+G V  +  +GA +   GGV  L  +  MS   +  P + F+VG ++  
Sbjct: 213 TLAGLEEGKLVEGTVKNITEYGAFIDL-GGVDGLLHITDMSWGRLNHPSEMFQVGDKVEV 271

Query: 427 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
            +L     ++R+++ +K+      L +   +          G +  I  +G FV    GV
Sbjct: 272 AILKYDKDTERVSLGYKQKFADPWLTVEERFPMNAS---VKGKVVSITDYGAFVELEPGV 328

Query: 485 QGFAPRSELGLDPGCEPS-SMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDL 541
           +G    SE+      + +  M ++G +V+  I+     SRRI+L    + P    E  + 
Sbjct: 329 EGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQVDVESRRISLGMKQVTPNPWMEVAEK 388

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPG 596
             +G +V+G V  +T     V +      +G     H++D      ++H      V+K G
Sbjct: 389 YNIGQIVTGTVRNITEFGAFVEL-----EEGIDGLIHVSDFSWTKKIKHPG---EVVKKG 440

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
                ++L LD  +  + L  K    N  +Q   D   +     V G +  + + G FV 
Sbjct: 441 DSVTAKVLNLDPLNQRMSLGVKQMEPNVWEQF-FDGHRV--GDTVTGKIARLTDFGAFVD 497

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
               + G    S+    +  D+ K +   Q +   I+ ++    RI LS+KQ
Sbjct: 498 LGDGIEGLVHVSELSRKRVEDIQKEFTTAQELTMKIVKLDPTEHRIGLSVKQ 549



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 162/414 (39%), Gaps = 68/414 (16%)

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSL--INSAQQLPSDASHIHPNSVVHGYVCNIIETGC 652
           G  +D +++ ++    N++LS K  +  IN++ +  + A  +    +V G V NI E G 
Sbjct: 177 GKSYDMKVIKVNRRRGNIVLSRKLFMETINASLKEETLAG-LEEGKLVEGTVKNITEYGA 235

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           F+  LG + G    +    G+    S+ + VG  V   IL  + +T R++L  KQ     
Sbjct: 236 FID-LGGVDGLLHITDMSWGRLNHPSEMFQVGDKVEVAILKYDKDTERVSLGYKQK---- 290

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
               F      +EE+  M  S                   ++GKV    D+G  V  E  
Sbjct: 291 ----FADPWLTVEERFPMNAS-------------------VKGKVVSITDYGAFVELEPG 327

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 826
                H     +    + A   V  G +++A IL V    R + L +K V  + +     
Sbjct: 328 VEGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQVDVESRRISLGMKQVTPNPW----- 382

Query: 827 NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ--- 883
                      E ++   + Q V   V  + E    + L E     G   VSD++     
Sbjct: 383 ----------MEVAEKYNIGQIVTGTVRNITEFGAFVELEEGID--GLIHVSDFSWTKKI 430

Query: 884 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 943
           K P +    G SV A V+ L   +   R+ L +K     +   +   +    + VG  V 
Sbjct: 431 KHPGEVVKKGDSVTAKVLNLDPLNQ--RMSLGVK-----QMEPNVWEQFFDGHRVGDTVT 483

Query: 944 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
            +I  +      +  G G  G +H++E++  +   VE++   F   Q +T +I+
Sbjct: 484 GKIARLTDFGAFVDLGDGIEGLVHVSELSRKR---VEDIQKEFTTAQELTMKIV 534



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            L+ L  G +V G +K +  YG FI +   +  GL H++++S   +++   +++ G+KV+V
Sbjct: 214  LAGLEEGKLVEGTVKNITEYGAFIDLGGVD--GLLHITDMSWGRLNHPSEMFQVGDKVEV 271

Query: 1398 KILKVDKEKRRISLGMKSSY 1417
             ILK DK+  R+SLG K  +
Sbjct: 272  AILKYDKDTERVSLGYKQKF 291



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 107/507 (21%), Positives = 188/507 (37%), Gaps = 95/507 (18%)

Query: 64  VGQLVSCIVLQLDD-------DKKEIGKRKIW----LSLRLSLLYKGLSLETVQEGMVLT 112
           VG +V  +V  L+D        ++   K KIW     + R ++   G+ LE V+ G+ + 
Sbjct: 93  VGDVVEVLVEHLEDVNGNVRLSRERAEKMKIWDEVEKAFRSNMTVHGVVLEKVKGGLAVD 152

Query: 113 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDR 164
             +++                 FLP       S +DVKP        G      V  ++R
Sbjct: 153 IGIRA-----------------FLP------GSQVDVKPVRNLDPYLGKSYDMKVIKVNR 189

Query: 165 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 224
            R  + LS       + +   LK  ++  L  G +V   V++I E G  +       G V
Sbjct: 190 RRGNIVLSRK--LFMETINASLKEETLAGLEEGKLVEGTVKNITEYGAFIDL-----GGV 242

Query: 225 D-IFHLQN-TFPTTNWKNDYNQ-HKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAP 276
           D + H+ + ++   N  ++  Q   KV   IL  D  +  V L       +P+L      
Sbjct: 243 DGLLHITDMSWGRLNHPSEMFQVGDKVEVAILKYDKDTERVSLGYKQKFADPWLTVEERF 302

Query: 277 PSHV----KVGDIYDQSKVVRVDRGLGLLLDIPSTPV-----STPAYVTISDVAEEEVRK 327
           P +     KV  I D    V ++ G+  L+ +          S    V + D+ E  + +
Sbjct: 303 PMNASVKGKVVSITDYGAFVELEPGVEGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQ 362

Query: 328 LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 387
           ++ + +  S    ++     +E                        G +V G V  +  F
Sbjct: 363 VDVESRRISLGMKQVTPNPWME-----------------VAEKYNIGQIVTGTVRNITEF 405

Query: 388 GAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVLGVK--SKRITVTHK 441
           GA V+   G+  L    H+S+F   K    PG+  K G  +  +VL +   ++R+++  K
Sbjct: 406 GAFVELEEGIDGLI---HVSDFSWTKKIKHPGEVVKKGDSVTAKVLNLDPLNQRMSLGVK 462

Query: 442 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           +            +          G I ++   G FV   +G++G    SEL      + 
Sbjct: 463 QMEPNVWEQFFDGHRVGD---TVTGKIARLTDFGAFVDLGDGIEGLVHVSELSRKRVEDI 519

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLS 528
              +   Q +  +I+   P   RI LS
Sbjct: 520 QKEFTTAQELTMKIVKLDPTEHRIGLS 546


>gi|381162416|ref|ZP_09871646.1| ribosomal protein S1 [Saccharomonospora azurea NA-128]
 gi|418461759|ref|ZP_13032823.1| 30S ribosomal protein S1 [Saccharomonospora azurea SZMC 14600]
 gi|359738168|gb|EHK87068.1| 30S ribosomal protein S1 [Saccharomonospora azurea SZMC 14600]
 gi|379254321|gb|EHY88247.1| ribosomal protein S1 [Saccharomonospora azurea NA-128]
          Length = 493

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 182/406 (44%), Gaps = 62/406 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 41   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VAVGDEVEAL 94

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 95   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEPVRGTVIEVVKG--GLIL 145

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 146  DIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKNRN---N 187

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L+   + +G V ++ + G F+ L 
Sbjct: 188  VVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG 234

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q  
Sbjct: 235  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-- 291

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G 
Sbjct: 292  ---FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGS 347

Query: 1394 KVKVKILKVDKEKRRISLGMKSSY--FKNDA--DNLQMSSEEESDE 1435
            +V VK++ +D E+RRISL +K +   F  DA  D  Q     E DE
Sbjct: 348  EVMVKVIDIDLERRRISLSLKQANEGFTPDAEFDPTQYGMAAEYDE 393



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 146/362 (40%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 43  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKEDKE 102

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGF----LP---- 154

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 155 ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKG 214

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 215 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 273

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 274 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 306

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  EE  +    I+     H ++    V+ GS +   ++D+    R + LS
Sbjct: 307 TKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGSEVMVKVIDIDLERRRISLS 366

Query: 813 LK 814
           LK
Sbjct: 367 LK 368



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKED 100

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 717
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T DA F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGSEVMVKVIDIDLERRRISLSLKQANEGFTPDAEF 380


>gi|347753863|ref|YP_004861427.1| 30S ribosomal protein S1 [Candidatus Chloracidobacterium thermophilum
            B]
 gi|347586381|gb|AEP10911.1| SSU ribosomal protein S1P [Candidatus Chloracidobacterium
            thermophilum B]
          Length = 562

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 103/190 (54%), Gaps = 6/190 (3%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            V G V+N+T  G F+ +   +D  + +S+LS    V+ P      G+ V   + +++  +
Sbjct: 372  VSGKVRNLTDFGAFVEIEDGIDGLIHVSDLSWTKRVKHPSDVLKKGQSVEAIITNIDTAN 431

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ +++K  +     +       +  VGD+V G++ R+  +G+F+ +E   + GLCH+S
Sbjct: 432  RRLSLSIKDLEPNAWERF----FQSHRVGDVVTGKVVRLAGFGVFVELEE-GIEGLCHIS 486

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
            ELS+  VD  E++   G+ +  KILK+D+  R+I L  ++   +ND +++      ES  
Sbjct: 487  ELSDQRVDRPESVVSVGQVLPFKILKLDESNRKIGLSARAVGKENDPEDVSNYLNNESMT 546

Query: 1436 AIEEVGSYNR 1445
            ++ EV  + R
Sbjct: 547  SLGEVARFLR 556



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 13/176 (7%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            +  E +  L  N+IV G VKN+T  G FI L   +D  + ++++S G +  P   F IG 
Sbjct: 186  RKAETLRMLDENVIVSGQVKNLTDYGAFIDLG-GIDGLLHVTDMSWGRLPKPSDMFNIGD 244

Query: 1303 LVAGRVLSVEPLSKRVEVTLKT---SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
             +  +VL  +   +RV +  K        T ++    N       DIV G++  V  YG 
Sbjct: 245  TIQVKVLKFDRERERVSLGYKQLLPDPWDTVTERYRKN-------DIVKGRVVSVTDYGA 297

Query: 1360 FITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            F+ +E   + GL HVSE++    + +   +   G++V+  IL+VD   RRISLGMK
Sbjct: 298  FVELEE-GVEGLVHVSEMTWSKRIKHPSKLVSVGDEVEAMILEVDPANRRISLGMK 352



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 151/346 (43%), Gaps = 32/346 (9%)

Query: 375 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 432
           ++V G+V  +  +GA +   GG+  L  +  MS   + KP   F +G  +  +VL    +
Sbjct: 198 VIVSGQVKNLTDYGAFIDL-GGIDGLLHVTDMSWGRLPKPSDMFNIGDTIQVKVLKFDRE 256

Query: 433 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 492
            +R+++ +K+ L      +   Y +     I  G +  +  +G FV    GV+G    SE
Sbjct: 257 RERVSLGYKQLLPDPWDTVTERYRKND---IVKGRVVSVTDYGAFVELEEGVEGLVHVSE 313

Query: 493 LGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV----KLGSL 547
           +      + PS +  VG  V+  I+   PA+RRI+L   MK  + +  D V     +GS 
Sbjct: 314 MTWSKRIKHPSKLVSVGDEVEAMILEVDPANRRISLG--MKQIQPNPWDSVAQRYSVGSR 371

Query: 548 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFDQL 602
           VSG V  +T     V +       G     H++D      ++H +    V+K G   + +
Sbjct: 372 VSGKVRNLTDFGAFVEI-----EDGIDGLIHVSDLSWTKRVKHPS---DVLKKGQSVEAI 423

Query: 603 LV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +  +D  +  L LS K    N+ ++     SH     VV G V  +   G FV     + 
Sbjct: 424 ITNIDTANRRLSLSIKDLEPNAWERFFQ--SH-RVGDVVTGKVVRLAGFGVFVELEEGIE 480

Query: 662 GFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLK 706
           G    S+  D QR D  ++   VGQ +   IL ++    +I LS +
Sbjct: 481 GLCHISELSD-QRVDRPESVVSVGQVLPFKILKLDESNRKIGLSAR 525



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 168/393 (42%), Gaps = 61/393 (15%)

Query: 64  VGQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
           +G+ ++  +L+L+  +  I   RK+ L   ++   K  +L  + E ++++  VK++ D+G
Sbjct: 153 IGREMTFRILKLNKKRNNIVLSRKVLLEEEMTA-RKAETLRMLDENVIVSGQVKNLTDYG 211

Query: 123 YILHFGLPSFTGFLPRNNLAENSGIDVKP------GLLLQGVVRSIDRTRKVVYLS---- 172
             +  G     G L   +++   G   KP      G  +Q  V   DR R+ V L     
Sbjct: 212 AFIDLG--GIDGLLHVTDMS--WGRLPKPSDMFNIGDTIQVKVLKFDRERERVSLGYKQL 267

Query: 173 -SDP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 230
             DP DTV++   K+             +V  RV S+ + G  +       G V +  + 
Sbjct: 268 LPDPWDTVTERYRKN------------DIVKGRVVSVTDYGAFVELEEGVEGLVHVSEMT 315

Query: 231 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY--LLHNRAPPSHV--K 281
            +    +     +   +V A IL VDP +R + L +     NP+  +    +  S V  K
Sbjct: 316 WSKRIKHPSKLVSVGDEVEAMILEVDPANRRISLGMKQIQPNPWDSVAQRYSVGSRVSGK 375

Query: 282 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRV 340
           V ++ D    V ++ G+  L             + +SD++  + V+      K+G  V  
Sbjct: 376 VRNLTDFGAFVEIEDGIDGL-------------IHVSDLSWTKRVKHPSDVLKKGQSVEA 422

Query: 341 RILGF----RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 396
            I       R L  L+   L+ +A+E    +H   + G VV GKV+ +  FG  V+   G
Sbjct: 423 IITNIDTANRRLS-LSIKDLEPNAWERFFQSH---RVGDVVTGKVVRLAGFGVFVELEEG 478

Query: 397 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           ++ LC +  +S+  + +P     VG  L F++L
Sbjct: 479 IEGLCHISELSDQRVDRPESVVSVGQVLPFKIL 511



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 6/117 (5%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1357
            IG+ +  R+L +      + ++ K    +  TA ++E   + + +V  IV GQ+K +  Y
Sbjct: 153  IGREMTFRILKLNKKRNNIVLSRKVLLEEEMTARKAETLRMLDENV--IVSGQVKNLTDY 210

Query: 1358 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            G FI +   +  GL HV+++S   +     ++  G+ ++VK+LK D+E+ R+SLG K
Sbjct: 211  GAFIDLGGID--GLLHVTDMSWGRLPKPSDMFNIGDTIQVKVLKFDRERERVSLGYK 265



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVG--AELVFRVLG 430
           G  V GKV  +  FGA V+   G+  L  +  +S  + VK P    K G   E +   + 
Sbjct: 369 GSRVSGKVRNLTDFGAFVEIEDGIDGLIHVSDLSWTKRVKHPSDVLKKGQSVEAIITNID 428

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
             ++R++++ K     +      S+       +  G + ++   G FV    G++G    
Sbjct: 429 TANRRLSLSIKDLEPNAWERFFQSHRVGD---VVTGKVVRLAGFGVFVELEEGIEGLCHI 485

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           SEL       P S+  VGQV+  +I+    ++R+I LS
Sbjct: 486 SELSDQRVDRPESVVSVGQVLPFKILKLDESNRKIGLS 523


>gi|315038198|ref|YP_004031766.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
 gi|325956650|ref|YP_004292062.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
 gi|385817537|ref|YP_005853927.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
 gi|312276331|gb|ADQ58971.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
 gi|325333215|gb|ADZ07123.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
 gi|327183475|gb|AEA31922.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
          Length = 403

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDALKAGQDVKVKVIGIDNDR 258

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +++K ++     Q+     +NL+ GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TANLNEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 14/162 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDALKAGQDVKVKVIGIDN 256

Query: 434 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 487
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATANLNEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS 
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSI 351



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGA 213

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            FI +   +  GL H+SE+S  HVD      +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDALKAGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 108/237 (45%), Gaps = 53/237 (22%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVG-GVDGLVHISEISYKHVDKP--------SDALKA--- 243

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++ +                  P    +   +L+  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATANLNEG 283

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1315 SKRVEVTLKTSDS-------------RTASQSEIN------NLSNLHVGDIVIGQIK 1352
             +R+ +++K +DS             R+ +++ +N      N +   +GDI+  Q+K
Sbjct: 344  DRRISLSIKAADSNTSSSDNNSSRPRRSRNENSVNKKYMSDNDNGFALGDIIGDQLK 400



 Score = 47.0 bits (110), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 129/312 (41%), Gaps = 34/312 (10%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGKAIEGTVT 120

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 523
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 524 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            ++   +H       +K G +   +++ +DN+   + LS K +  +  +Q     ++++ 
Sbjct: 228 EIS--YKHVDKPSDALKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQA---TANLNE 282

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 697 ETGRITLSLKQS 708
              RI+LS+K +
Sbjct: 343 SDRRISLSIKAA 354


>gi|309810340|ref|ZP_07704176.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
 gi|308435705|gb|EFP59501.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
          Length = 499

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S   S + V++IGS+  L    D +I     G  V G + KVD +  LL I       + 
Sbjct: 3    STTTSPIAVNDIGSEEELLAAIDATIKHFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVIP 62

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P E+        +G  V   VL   KE K  RL+L   +        + 
Sbjct: 63   SRELSIKHDVDPGEV------VKVGDDVEALVL--QKEDKEGRLILSKKR-----AQYER 109

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    +  +V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 110  AWGTIEQIKEDDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 166

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   +           
Sbjct: 167  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF--------- 200

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +++L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ 
Sbjct: 201  ----LKELQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE 255

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G +V G++ ++  +G F+ 
Sbjct: 256  VTVEVLDVDMDRERVSLSLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFVR 310

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E+  + GL H+SEL+E HV+  E +   G  + VK++ +D E+RRISL +K +
Sbjct: 311  VED-GIEGLVHISELAERHVELPEQVVTVGSDIFVKVIDIDLERRRISLSLKQA 363



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 153/356 (42%), Gaps = 31/356 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V PG+  KVG ++   VL  + 
Sbjct: 34  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDDVEALVLQKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEQIKE--DDGVVTGTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 150 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 206 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 260 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 315

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
            G    S+  +       +   VG  +   ++D++ E  RI+LSLKQ+      AS
Sbjct: 316 EGLVHISELAERHVELPEQVVTVGSDIFVKVIDIDLERRRISLSLKQANEDGAAAS 371



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 121/280 (43%), Gaps = 51/280 (18%)

Query: 1067 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
             ILD     + P+ L E +R    + ++GK +   ++ ++K +  + L  R + +     
Sbjct: 136  LILDIGLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLE----- 190

Query: 1120 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1176
                 ++   TF+ E   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 191  --QTQSEVRTTFLKELQKGQVRSGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 245

Query: 1177 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1236
            P    + GQ            V  +VL++         V LSL+++ +            
Sbjct: 246  PSEVVEVGQE-----------VTVEVLDVDMDRE---RVSLSLKATQE------------ 279

Query: 1237 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1296
                P +H  +   +    +V G V  +   G F+ +   ++  V +S L++ +VE PE+
Sbjct: 280  ---DPWQHFARTHAI--GQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVELPEQ 334

Query: 1297 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1336
               +G  +  +V+ ++   +R+ ++LK ++   A+ SE +
Sbjct: 335  VVTVGSDIFVKVIDIDLERRRISLSLKQANEDGAAASEFD 374


>gi|227893491|ref|ZP_04011296.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
 gi|227864716|gb|EEJ72137.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
          Length = 402

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 95/169 (56%), Gaps = 6/169 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDR 258

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +++K ++     Q+     +NL  GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TANLSEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1424
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++     +DN
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSDN 362



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 14/173 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDN 256

Query: 434 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 487
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATANLSEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S D+
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSDN 362



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGA 213

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            FI +   +  GL H+SE+S  HVD    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++ +                  P    +   +LS  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATANLSEG 283

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1315 SKRVEVTLKTSDSRTASQS 1333
             +R+ +++K +DS  +S +
Sbjct: 344  DRRISLSIKAADSNASSDN 362



 Score = 48.9 bits (115), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 132/317 (41%), Gaps = 34/317 (10%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGKAIEGTVT 120

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 523
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 524 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  ++ S    
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATANLSE--- 282

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 697 ETGRITLSLKQSCCSST 713
              RI+LS+K +  +++
Sbjct: 343 SDRRISLSIKAADSNAS 359



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 144/371 (38%), Gaps = 59/371 (15%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 538
           GV+G   R E   D   +   +   G   K  ++      +  N  F    TR+ E    
Sbjct: 44  GVEGVITRREYTSDRNADLRDLVKPGDKFKALVLRRAGGDKE-NGEFFFSVTRLKEREAY 102

Query: 539 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
           D L K    G  + G V       ++V V  +G+    +P   +++   + + +K  I  
Sbjct: 103 DKLQKDFEEGKAIEGTVTSSVRGGLLVDVGTRGF----LPASLISNR--YVSDLKPYIGK 156

Query: 596 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 653
             +  ++  +D   + L+LS K  L+   ++   D  AS +    V+ G V  +   G F
Sbjct: 157 TMKL-KITEIDPNKNRLILSHK-DLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAF 214

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
           +  +G + G    S+         S     GQ V+  ++ ++++  RI+LS+KQ+  S  
Sbjct: 215 ID-VGGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSP- 272

Query: 714 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 773
                      E+  A L                  G V EG+V    +FG  V  E   
Sbjct: 273 ----------FEQATANLSE----------------GDVFEGEVKSLTNFGAFV--EVAD 304

Query: 774 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 826
            + G +   +++   V+        G  ++  +L++  ++R + LS+K         A+S
Sbjct: 305 GIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA----DSNASS 360

Query: 827 NRQAQKKKRKR 837
           +    + +R R
Sbjct: 361 DNHNSRPRRSR 371


>gi|257792261|ref|YP_003182867.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM 2243]
 gi|317490189|ref|ZP_07948677.1| S1 RNA binding domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325833424|ref|ZP_08165873.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
 gi|257476158|gb|ACV56478.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243]
 gi|316910683|gb|EFV32304.1| S1 RNA binding domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325485348|gb|EGC87817.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
          Length = 405

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 178/384 (46%), Gaps = 74/384 (19%)

Query: 1112 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI-----LSGVG----GLV--------- 1153
            F+D ISD+ ++   D   T   EGD+V G + KI     L  +G    G++         
Sbjct: 12   FED-ISDEQMNAMIDGTLTEFDEGDLVDGTVVKIEHDEVLVDIGFKSEGVIPSRELSIRK 70

Query: 1154 -------VQIGPHLYGRVHFTELKN--ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1204
                   V++G  +   V   E K+  + +S   + Y+         +  G+ V  +V+E
Sbjct: 71   DADPSDIVELGEKIEALVLQKEDKDGRLILSKKRAEYERAWIRVEEKFKAGEVVTGEVIE 130

Query: 1205 ISRTVRGTFHVELSLR----SSLDGMSSTNSSD--LSTDVDT------------------ 1240
            +   V+G   +++ LR    +SL  +      D  L T+++                   
Sbjct: 131  V---VKGGLILDIGLRGFLPASLVDLRRVKDLDMYLGTEIEARVIEMDRNRNNVVLSRRV 187

Query: 1241 ---PGKHLEKIE---DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1294
                G+  E+ E    LS  M ++G V ++   G F+ L   +D  V +S LS  +V  P
Sbjct: 188  LLEEGRKNERAEILAKLSKGMRLKGTVSSIVDFGAFVDLG-GIDGLVHISELSWNHVNHP 246

Query: 1295 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1354
             +   +G  V   VL V+   +R+ + LK    +T     +  + +  VG IV G++ ++
Sbjct: 247  SEVVKVGDEVEVEVLDVDLQRERISLGLK----QTTEDPWVKLVESYPVGTIVDGKVTKI 302

Query: 1355 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              +G FI +   ++ GL H+SE++  H+D    + +AG++VKVK+++++ E+RRISL MK
Sbjct: 303  VPFGAFIEL-GQSIEGLVHISEMAMRHIDTPAQVVKAGDEVKVKVMEINPERRRISLSMK 361

Query: 1415 SSYFKNDADNLQMSSEEESDEAIE 1438
            ++     AD   +  E E DE+I+
Sbjct: 362  AAA----AD---LGFEIEVDESIQ 378



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
           GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   VL V  
Sbjct: 207 GMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDL 265

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           + +RI++  K+T     + ++ SY   T   I  G +TKI   G F+     ++G    S
Sbjct: 266 QRERISLGLKQTTEDPWVKLVESYPVGT---IVDGKVTKIVPFGAFIELGQSIEGLVHIS 322

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           E+ +     P+ +   G  VK ++M   P  RRI+LS 
Sbjct: 323 EMAMRHIDTPAQVVKAGDEVKVKVMEINPERRRISLSM 360



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 74/371 (19%), Positives = 150/371 (40%), Gaps = 54/371 (14%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G + KIE     V      +G  P  EL +    +PS +  +G+ ++  ++      
Sbjct: 36  LVDGTVVKIEHDEVLVDIGFKSEGVIPSRELSIRKDADPSDIVELGEKIEALVLQKEDKD 95

Query: 523 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
            R+ LS     +     RV E    K G +V+G V  V    +++ +  +G+   ++   
Sbjct: 96  GRLILSKKRAEYERAWIRVEEK--FKAGEVVTGEVIEVVKGGLILDIGLRGFLPASLVDL 153

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIH 635
                L+        +  G E + +++ +D   +N++LS +  L    +   ++  + + 
Sbjct: 154 RRVKDLD--------MYLGTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILAKLS 205

Query: 636 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695
               + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+
Sbjct: 206 KGMRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVD 264

Query: 696 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 755
            +  RI+L LKQ+                                +K VE + +G++++G
Sbjct: 265 LQRERISLGLKQTTEDPW---------------------------VKLVESYPVGTIVDG 297

Query: 756 KVHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERL 808
           KV +   FG  +   +   + G +   ++A          V++G  ++  ++++    R 
Sbjct: 298 KVTKIVPFGAFIELGQS--IEGLVHISEMAMRHIDTPAQVVKAGDEVKVKVMEINPERRR 355

Query: 809 VDLSLKTVFID 819
           + LS+K    D
Sbjct: 356 ISLSMKAAAAD 366


>gi|417931599|ref|ZP_12574964.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182B-JCVI]
 gi|340775542|gb|EGR97595.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182B-JCVI]
          Length = 498

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 181/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL HVSEL+E HV+  E +    +   VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDAMVKIIDIDLDRRRISLSLKQA 382



 Score = 47.4 bits (111), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   V       I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDAMVKIIDIDLDRRRISLSLKQA 382


>gi|407983878|ref|ZP_11164515.1| S1 RNA binding domain protein [Mycobacterium hassiacum DSM 44199]
 gi|407374455|gb|EKF23434.1| S1 RNA binding domain protein [Mycobacterium hassiacum DSM 44199]
          Length = 478

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VSVGDKVEALVLT--KEDKDGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE H++  + + + G+ V VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHIEVADQVVQVGDDVMVKVIDIDLERRRISLSLKQA 365



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 146/366 (39%), Gaps = 46/366 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDKVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKDGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++A   V+ G  +   ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHIEVADQVVQVGDDVMVKVIDIDLERRR 357

Query: 809 VDLSLK 814
           + LSLK
Sbjct: 358 ISLSLK 363



 Score = 47.4 bits (111), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 152/354 (42%), Gaps = 31/354 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG ++   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDKVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    +D
Sbjct: 318 EGLVHISELSERHIEVADQVVQVGDDVMVKVIDIDLERRRISLSLKQANEDYSD 371


>gi|58337265|ref|YP_193850.1| 30S ribosomal protein S1 [Lactobacillus acidophilus NCFM]
 gi|227903850|ref|ZP_04021655.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
 gi|58254582|gb|AAV42819.1| 30S Ribosomal protein S1 [Lactobacillus acidophilus NCFM]
 gi|227868737|gb|EEJ76158.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
          Length = 403

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +V+G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGSFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDR 258

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +++K ++     Q+     ++L+ GDI  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDIFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPNDRRISLSIKAA 354



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 14/162 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G VV+GKV  + +FG+ +   GGV  L  +  +S   + KP    KVG ++  +V+G+ +
Sbjct: 198 GDVVEGKVSRLTNFGSFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDN 256

Query: 434 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 487
            R  I+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDIFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
              SE+      +PS +  VGQ VK ++++  P  RRI+LS 
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPNDRRISLSI 351



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD+V G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGS 213

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            FI +   +  GL H+SE+S  HVD    + + G+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 108/237 (45%), Gaps = 53/237 (22%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD+V G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVVEGKVSRLTNF--GSFIDVG-GVDGLVHISEISYKHVDKP--------SDVLK---V 243

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++ +                  P    +   DL+  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATADLNEG 283

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             I +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPN 343

Query: 1315 SKRVEVTLKTSDS-------------RTASQSEIN------NLSNLHVGDIVIGQIK 1352
             +R+ +++K +DS             R+ +++ +N      N +   +GDI+  Q+K
Sbjct: 344  DRRISLSIKAADSNSSSSDNHNSRPRRSRNENTVNKKYMSDNDNGFALGDIIGDQLK 400



 Score = 48.9 bits (115), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 130/312 (41%), Gaps = 34/312 (10%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNAIEGTVT 120

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 523
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 524 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R+ LS   +++  R    D V     +G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGSFIDV---GGVDGLVHIS 227

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             +  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 697 ETGRITLSLKQS 708
              RI+LS+K +
Sbjct: 343 NDRRISLSIKAA 354


>gi|375141664|ref|YP_005002313.1| 30S ribosomal protein S1 [Mycobacterium rhodesiae NBB3]
 gi|359822285|gb|AEV75098.1| ribosomal protein S1 [Mycobacterium rhodesiae NBB3]
          Length = 482

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 187/414 (45%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVNVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 151/380 (39%), Gaps = 46/380 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LTKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVNVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRR 357

Query: 809 VDLSLKTVFIDRFREANSNR 828
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVNVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407


>gi|256832461|ref|YP_003161188.1| RNA binding S1 domain-containing protein [Jonesia denitrificans DSM
            20603]
 gi|256685992|gb|ACV08885.1| RNA binding S1 domain protein [Jonesia denitrificans DSM 20603]
          Length = 488

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 188/415 (45%), Gaps = 64/415 (15%)

Query: 1013 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1062
            ++I    + V++IG++  F    D +I     G  V G + KVD +  LL I       +
Sbjct: 1    MTISTPQVAVNDIGTEEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVI 60

Query: 1063 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1122
             ++   +    +P E+       ++G +V   VL   KE K  RL+L   +        +
Sbjct: 61   PSRELSIKHDVDPGEV------VNVGDSVEALVL--QKEDKEGRLILSKKR-----AQYE 107

Query: 1123 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1182
             +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +
Sbjct: 108  RAWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE 165

Query: 1183 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1242
                           ++ K++E+ +      +V LS R+ L+    T S   ST + T  
Sbjct: 166  ---------------IEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT-- 202

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
                    L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+
Sbjct: 203  --------LQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQ 253

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFI 1361
             V   VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+
Sbjct: 254  EVTVEVLDVDFDRERVSLSLKAT-----QEDPWQTFARTHAIGQVVPGKVTKLVPFGAFV 308

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             +E+  + GL H+SEL+  HVD  E +   G+   VK++ +D E+RRISL +K +
Sbjct: 309  RVED-GIEGLVHISELAVRHVDLPEQVVNVGDDAFVKVIDIDLERRRISLSLKQA 362



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 203 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 261

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 262 VDFDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +     P  + +VG     +++      RRI+LS 
Sbjct: 319 HISELAVRHVDLPEQVVNVGDDAFVKVIDIDLERRRISLSL 359



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 146/375 (38%), Gaps = 46/375 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P  + +VG 
Sbjct: 22  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVNVGD 81

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            V+  ++       R+ LS        +   + K+     +V+G V  V    +++ +  
Sbjct: 82  SVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDIGL 141

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 142 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 193

Query: 626 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S     +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 194 EVRSTFLQTLQKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
           Q V   +LDV+ +  R++LSLK +       +F + H                       
Sbjct: 253 QEVTVEVLDVDFDRERVSLSLK-ATQEDPWQTFARTH----------------------- 288

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 799
               IG V+ GKV +   FG  V  E+  +    I+     H  L    V  G      +
Sbjct: 289 ---AIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVNVGDDAFVKV 345

Query: 800 LDVAKAERLVDLSLK 814
           +D+    R + LSLK
Sbjct: 346 IDIDLERRRISLSLK 360



 Score = 48.5 bits (114), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 153/350 (43%), Gaps = 35/350 (10%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG  +   VL  + 
Sbjct: 33  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVNVGDSVEALVLQKED 92

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 204

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 259 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 314

Query: 661 TGFAPRSK-AVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+ AV  +  DL  +   VG      ++D++ E  RI+LSLKQ+
Sbjct: 315 EGLVHISELAV--RHVDLPEQVVNVGDDAFVKVIDIDLERRRISLSLKQA 362


>gi|404421594|ref|ZP_11003308.1| 30S ribosomal protein S1 [Mycobacterium fortuitum subsp. fortuitum
            DSM 46621]
 gi|403658822|gb|EJZ13520.1| 30S ribosomal protein S1 [Mycobacterium fortuitum subsp. fortuitum
            DSM 46621]
          Length = 479

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 151/380 (39%), Gaps = 46/380 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRR 357

Query: 809 VDLSLKTVFIDRFREANSNR 828
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407


>gi|383808184|ref|ZP_09963736.1| 30S ribosomal protein S1 [Rothia aeria F0474]
 gi|383449142|gb|EID52087.1| 30S ribosomal protein S1 [Rothia aeria F0474]
          Length = 484

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 185/416 (44%), Gaps = 66/416 (15%)

Query: 1013 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1066
            +S     + +++IG++  F +  D +I     G  V+G V KVD++  LL I    +  +
Sbjct: 1    MSTNIPQVAINDIGNEEEFLKAVDETIKYFNDGDLVSGQVVKVDHDEVLLDIGYKTEGVI 60

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTG----HVLSINKEKKLLRLVLRPFQDGISDKTVD 1122
                    PS     +     G+ VT       L + KE K  RL+L   +        D
Sbjct: 61   --------PSRELSIKHDVDPGEVVTVGDEIEALVLTKEDKEGRLILSKKRAQYERAWGD 112

Query: 1123 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            I        I E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------IKENDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
                          Q ++ K++E+ +      +V LS R+ L+   S   S         
Sbjct: 164  --------------QQLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSTF------- 199

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
                  +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 200  ------LNQLEKGQVRDGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLF 1360
            + V   VL V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F
Sbjct: 253  QKVTVEVLEVDLDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAF 307

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +E+  + GL H+SEL+  HVD  + +   GE++ VKI+ +D ++RRISL +K +
Sbjct: 308  VRVED-GIEGLVHISELAVRHVDLADQVVSVGEELFVKIIDIDMDRRRISLSLKQA 362



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   VL 
Sbjct: 203 LEKGQVRDGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEVLE 261

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G  
Sbjct: 262 VDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +        +  VG+ +  +I+      RRI+LS 
Sbjct: 319 HISELAVRHVDLADQVVSVGEELFVKIIDIDMDRRRISLSL 359



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 145/366 (39%), Gaps = 46/366 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  +  G + K++     +      +G  P  EL +    +P  +  VG  ++  +++ 
Sbjct: 31  NDGDLVSGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDEIEALVLTK 90

Query: 519 IPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P
Sbjct: 91  EDKEGRLILSKKRAQYERAWGDIEKIKENDGVVTGTVIEVVKGGLILDIGLRGF----LP 146

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + 
Sbjct: 147 ----ASLVEMRRVRDLAPYIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNQ 202

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+
Sbjct: 203 LEKGQVRDGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEVLE 261

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +      A F + H L                          G ++
Sbjct: 262 VDLDRERVSLSLKATQEDPWQA-FARTHAL--------------------------GQIV 294

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  E+  +    I+     H  LA   V  G  +   I+D+    R 
Sbjct: 295 PGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLADQVVSVGEELFVKIIDIDMDRRR 354

Query: 809 VDLSLK 814
           + LSLK
Sbjct: 355 ISLSLK 360



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 159/351 (45%), Gaps = 37/351 (10%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G+V+ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 33  GDLVSGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDEIEALVLTKED 92

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKIKE-NDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNQLE 204

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 205 KGQVRDGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVTVE 258

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 259 VLEVDLDRERVSLSLK-----ATQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 660 LTGFAPRSK-AVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+ AV  +  DL+ +   VG+ +   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAV--RHVDLADQVVSVGEELFVKIIDIDMDRRRISLSLKQA 362


>gi|340626635|ref|YP_004745087.1| putative ribosomal protein S1 RPSA [Mycobacterium canettii CIPT
            140010059]
 gi|433626722|ref|YP_007260351.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140060008]
 gi|340004825|emb|CCC43970.1| putative ribosomal protein S1 RPSA [Mycobacterium canettii CIPT
            140010059]
 gi|432154328|emb|CCK51560.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140060008]
          Length = 481

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                + +L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNNLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  ++
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNN 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 807 RLVDLSLK 814
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|444305869|ref|ZP_21141645.1| 30S ribosomal protein S1 [Arthrobacter sp. SJCon]
 gi|443481791|gb|ELT44710.1| 30S ribosomal protein S1 [Arthrobacter sp. SJCon]
          Length = 491

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 191/420 (45%), Gaps = 64/420 (15%)

Query: 1019 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1068
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            +    +P E+        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGEV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVSVGDQVEALVLTKE 97

Query: 520 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 634
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 754
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 755 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 809
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 810 DLSLK 814
            LSLK
Sbjct: 362 SLSLK 366



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LEKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLE 267

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDLDRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
             SEL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 325 HISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 47.8 bits (112), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG+   VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVSVGDQVEALVLTKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|433641768|ref|YP_007287527.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070008]
 gi|432158316|emb|CCK55607.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070008]
          Length = 481

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                + +L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  ++
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNN 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGTIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 807 RLVDLSLK 814
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|403737731|ref|ZP_10950459.1| 30S ribosomal protein S1 [Austwickia chelonae NBRC 105200]
 gi|403191843|dbj|GAB77229.1| 30S ribosomal protein S1 [Austwickia chelonae NBRC 105200]
          Length = 485

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 185/414 (44%), Gaps = 67/414 (16%)

Query: 1020 LTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1073
            + +++IGS+  L    D +I     G  V G + KVD +  LL I    +  +       
Sbjct: 10   IAINDIGSEEDLLAAIDATIKHFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVI------- 62

Query: 1074 EPSELQEFQRRFHIGKAVTG----HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
             PS     +     G+ VT       L + KE K  RL+L   +        + +   ++
Sbjct: 63   -PSRELSIKHDVDPGEVVTVGDEVEALVLQKEDKEGRLILSKKR-----AQYERAWGTIE 116

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 117  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 167

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+   S   +               ++
Sbjct: 168  --------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF-------------LK 203

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            +L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 204  ELQKGQVRTGQVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 262

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +    + +  H +G +V G++ ++  +G F+ +++  +
Sbjct: 263  DVDMDRERVSLSLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFVRVDD-GI 316

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
             GL H+SEL+E HV+  E +   G  + VK++ +D E+RRISL +K +   NDA
Sbjct: 317  EGLVHISELAERHVELPEQVVTVGTDIFVKVIDIDLERRRISLSLKQA---NDA 367



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 6/162 (3%)

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           +++ G V  G+V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL
Sbjct: 204 ELQKGQVRTGQVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 262

Query: 430 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
            V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G 
Sbjct: 263 DVDMDRERVSLSLKATQEDPWQHFARTHAIGQ---VVPGKVTKLVPFGAFVRVDDGIEGL 319

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
              SEL       P  +  VG  +  +++      RRI+LS 
Sbjct: 320 VHISELAERHVELPEQVVTVGTDIFVKVIDIDLERRRISLSL 361



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 155/362 (42%), Gaps = 35/362 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 35  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDEVEALVLQKED 94

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 150

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 151 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELQ 206

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + +G V  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRTGQVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 260

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 261 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAFVRVDDGI 316

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG  +   ++D++ E  RI+LSLKQ    + DA+    
Sbjct: 317 EGLVHISELAERHVELPEQVVTVGTDIFVKVIDIDLERRRISLSLKQ----ANDAAVATN 372

Query: 721 HF 722
            F
Sbjct: 373 EF 374



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 135/309 (43%), Gaps = 54/309 (17%)

Query: 1040 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1090
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 109  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 167

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1147
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G++S I++
Sbjct: 168  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLKELQKGQVRTGQVSSIVN 220

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
               G  V +G  + G VH +EL    +  P    + GQ            V  +VL++  
Sbjct: 221  F--GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVEVGQE-----------VTVEVLDVDM 266

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LSL+++ +                P +H  +   +    +V G V  +   
Sbjct: 267  DRE---RVSLSLKATQE---------------DPWQHFARTHAIG--QVVPGKVTKLVPF 306

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   ++  V +S L++ +VE PE+   +G  +  +V+ ++   +R+ ++LK ++ 
Sbjct: 307  GAFVRVDDGIEGLVHISELAERHVELPEQVVTVGTDIFVKVIDIDLERRRISLSLKQAND 366

Query: 1328 RTASQSEIN 1336
               + +E +
Sbjct: 367  AAVATNEFD 375


>gi|383817893|ref|ZP_09973194.1| 30S ribosomal protein S1 [Mycobacterium phlei RIVM601174]
 gi|383339724|gb|EID18052.1| 30S ribosomal protein S1 [Mycobacterium phlei RIVM601174]
          Length = 477

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 150/380 (39%), Gaps = 46/380 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRR 357

Query: 809 VDLSLKTVFIDRFREANSNR 828
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377



 Score = 48.1 bits (113), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|317124795|ref|YP_004098907.1| 30S ribosomal protein S1 [Intrasporangium calvum DSM 43043]
 gi|315588883|gb|ADU48180.1| SSU ribosomal protein S1P [Intrasporangium calvum DSM 43043]
          Length = 493

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 175/387 (45%), Gaps = 58/387 (14%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKA 1090
            D + G  V G + KVD +  LL I       + ++   +    +P E+        +G  
Sbjct: 34   DFNDGDIVEGRIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEI------VKVGDE 87

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
            V   VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  
Sbjct: 88   VEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGVVTGTVIEVVKG-- 138

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
            GL++ IG   +      E++ +    P  G +               ++ K++E+ +   
Sbjct: 139  GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE---------------IEAKIIELDKNRN 183

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
               +V LS R+ L+   S   +               +++L    + QG V ++ + G F
Sbjct: 184  ---NVVLSRRAWLEQTQSEVRTTF-------------LKELQKGQVRQGVVSSIVNFGAF 227

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            + L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +     
Sbjct: 228  VDLG-GVDGLVHVSELSWKHIDHPSEVVEVGTDVTVEVLDVDMDRERVSLSLKAT----- 281

Query: 1331 SQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
             +    + +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+E HV+  E + 
Sbjct: 282  QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAERHVELPEQVV 340

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSS 1416
               +++ VK++ +D E+RRISL +K +
Sbjct: 341  NVADEIFVKVIDIDLERRRISLSLKQA 367



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 156/363 (42%), Gaps = 31/363 (8%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           T  D   G +V+G+++ VD    ++      + + P   +S    V PG+  KVG E+  
Sbjct: 31  TIKDFNDGDIVEGRIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEIVKVGDEVEA 90

Query: 427 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
            VL  + K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G+
Sbjct: 91  LVLQKEDKEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GL 146

Query: 485 QGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRV 536
           +GF P S  E+      +P    +VG+ ++ +I+      +++  SRR  L       R 
Sbjct: 147 RGFLPASLVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 202

Query: 537 SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 595
           +    ++ G +  GVV  +      V +   G   G +    L+  H++H +    V++ 
Sbjct: 203 TFLKELQKGQVRQGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEV 256

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCF 653
           G +   ++L +D +   + LS K +  +  Q      +  H    VV G V  ++  G F
Sbjct: 257 GTDVTVEVLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAF 312

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
           VR    + G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+   S 
Sbjct: 313 VRVEDGIEGLVHISELAERHVELPEQVVNVADEIFVKVIDIDLERRRISLSLKQANDESV 372

Query: 714 DAS 716
             S
Sbjct: 373 PVS 375


>gi|326332716|ref|ZP_08198978.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
 gi|325949497|gb|EGD41575.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
          Length = 493

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 171/383 (44%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +PSE+ E      +G  V   
Sbjct: 42   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVE------VGDKVEAL 95

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 96   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEQVKEEDGVVEGAVIEVVKG--GLIL 146

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 147  DIGLRGFLPASLVEMRRVRDLQPYVG---------------QTLEAKIIELDKNRN---N 188

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S       T              L    I +G V ++ + G F+ L 
Sbjct: 189  VVLSRRAWLEQTQSEVRHGFLTQ-------------LQKGQIRKGVVSSIVNFGAFVDLG 235

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 236  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKAT-----QEDP 289

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
              + +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + +  +
Sbjct: 290  WQHFARTHQIGQIVPGKVTKLVPFGSFVRVEE-GIEGLVHISELAERHVEIPEQVVQVND 348

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
             V VKI+ +D E+RRISL +K +
Sbjct: 349  DVMVKIIDIDLERRRISLSLKQA 371



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 147/355 (41%), Gaps = 31/355 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 42  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVEVGDKVEALVLQKED 101

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E     +  G + ++ K G  +    G++GF P S
Sbjct: 102 KEGRLILSKKRAQYERAWGTIEQVKEEDG--VVEGAVIEVVKGGLILDI--GLRGFLPAS 157

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 158 LVEMRRVRDLQP----YVGQTLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRHGFLTQLQ 213

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 214 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 267

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  Q     A       +V G V  ++  G FVR    + 
Sbjct: 268 VLDVDMDRERVSLSLKATQEDPWQHF---ARTHQIGQIVPGKVTKLVPFGSFVRVEEGIE 324

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--CCSSTD 714
           G    S+  +       +   V   V   I+D++ E  RI+LSLKQ+    +STD
Sbjct: 325 GLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQANETVTSTD 379


>gi|452990290|emb|CCQ98504.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
            [Clostridium ultunense Esp]
          Length = 440

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 179/383 (46%), Gaps = 54/383 (14%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            +V +G  +TG V +++ + AL+ +    +A L I  S      +++ +   H+G  +   
Sbjct: 66   EVQVGDILTGKVSRIEEKQALIDVGFKYEAILPI--SEVSSLHIEKIEDVLHLGDEIEVK 123

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            V   N EK  L +  R      + + +    +N +TF  E  IV   + K     GGLV 
Sbjct: 124  VKKFNPEKDELVVSKRAVAAEKAWEVLSQRFENGETF--ETTIVD--VVK-----GGLVA 174

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             +G  L G +  ++++   V D             S Y +G+ +K KV+E+ R       
Sbjct: 175  DVG--LRGFIPASQVERNYVED------------FSDY-KGKPLKVKVIELDRE---NNR 216

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+  +     ++             +  L    +V+G V+ +T  G F+ L 
Sbjct: 217  VILSHRAVLEEEAERRKKEV-------------LNRLEAGQVVEGRVERITDFGAFVDLG 263

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS---RTAS 1331
              +D  + +S LS  +VE       +G +V  +VL V+  ++R+ ++LK +       A+
Sbjct: 264  -GVDGLIHISELSWDHVEKATDAVSVGDIVKVKVLKVDRENERISLSLKATQPSPWEKAA 322

Query: 1332 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1391
            QS       +  GD+V G ++R+ S+G F+ +    + GL HVS++S   V     + + 
Sbjct: 323  QS-------IKPGDVVKGIVRRLPSFGAFVEL-MPGVEGLVHVSQISRKRVGTPGEVLKE 374

Query: 1392 GEKVKVKILKVDKEKRRISLGMK 1414
            G++V+VK+L  + E +RISL MK
Sbjct: 375  GQEVEVKVLDFNLEDKRISLSMK 397



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            L+ L  G +V G+++R+  +G F+ +   +  GL H+SELS DHV+        G+ VKV
Sbjct: 237  LNRLEAGQVVEGRVERITDFGAFVDLGGVD--GLIHISELSWDHVEKATDAVSVGDIVKV 294

Query: 1398 KILKVDKEKRRISLGMKSS 1416
            K+LKVD+E  RISL +K++
Sbjct: 295  KVLKVDRENERISLSLKAT 313



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 155/368 (42%), Gaps = 29/368 (7%)

Query: 352 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 411
             G  +A++    V    +V+ G ++ GKV  ++   A++      +A+ P+  +S   I
Sbjct: 48  GNGPEEATSVNEAVSAVPEVQVGDILTGKVSRIEEKQALIDVGFKYEAILPISEVSSLHI 107

Query: 412 VKPGKKFKVGAELVFRV--LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
            K      +G E+  +V     +   + V+ +    +    +LS   E  +   T   I 
Sbjct: 108 EKIEDVLHLGDEIEVKVKKFNPEKDELVVSKRAVAAEKAWEVLSQRFENGETFETT--IV 165

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASR 523
            + K G       G++GF P S++  +   E  S Y  G+ +K +++      + +  S 
Sbjct: 166 DVVKGGLVADV--GLRGFIPASQVERNY-VEDFSDYK-GKPLKVKVIELDRENNRVILSH 221

Query: 524 RINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DH 582
           R  L    +  +    + ++ G +V G V+ +T     V +   G   G I    L+ DH
Sbjct: 222 RAVLEEEAERRKKEVLNRLEAGQVVEGRVERITDFGAFVDL---GGVDGLIHISELSWDH 278

Query: 583 LEHATVMKSV---IKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 639
           +E AT   SV   +K      ++L +D E+  + LS K +  +  ++    A  I P  V
Sbjct: 279 VEKATDAVSVGDIVKV-----KVLKVDRENERISLSLKATQPSPWEKA---AQSIKPGDV 330

Query: 640 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
           V G V  +   G FV  +  + G    S+    +     +    GQ V   +LD N E  
Sbjct: 331 VKGIVRRLPSFGAFVELMPGVEGLVHVSQISRKRVGTPGEVLKEGQEVEVKVLDFNLEDK 390

Query: 700 RITLSLKQ 707
           RI+LS+K+
Sbjct: 391 RISLSMKE 398



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 313 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 372
             + IS+++ + V K       G  V+V++L         +  LKA+           +K
Sbjct: 267 GLIHISELSWDHVEKATDAVSVGDIVKVKVLKVDRENERISLSLKATQPSPWEKAAQSIK 326

Query: 373 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--G 430
           PG VVKG V  + SFGA V+   GV+ L  +  +S   +  PG+  K G E+  +VL   
Sbjct: 327 PGDVVKGIVRRLPSFGAFVELMPGVEGLVHVSQISRKRVGTPGEVLKEGQEVEVKVLDFN 386

Query: 431 VKSKRITVTHKK 442
           ++ KRI+++ K+
Sbjct: 387 LEDKRISLSMKE 398



 Score = 40.4 bits (93), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 1329 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
            T+    ++ +  + VGDI+ G++ R+E     I +       +  +SE+S  H++ IE +
Sbjct: 55   TSVNEAVSAVPEVQVGDILTGKVSRIEEKQALIDV-GFKYEAILPISEVSSLHIEKIEDV 113

Query: 1389 YRAGEKVKVKILKVDKEK 1406
               G++++VK+ K + EK
Sbjct: 114  LHLGDEIEVKVKKFNPEK 131


>gi|433630724|ref|YP_007264352.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070010]
 gi|433634681|ref|YP_007268308.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070017]
 gi|432162317|emb|CCK59693.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070010]
 gi|432166274|emb|CCK63767.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070017]
          Length = 481

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                + +L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  ++
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNN 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGTIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 807 RLVDLSLK 814
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|422518357|ref|ZP_16594425.1| 30S ribosomal protein S1 [Propionibacterium acnes HL074PA1]
 gi|313772539|gb|EFS38505.1| 30S ribosomal protein S1 [Propionibacterium acnes HL074PA1]
          Length = 498

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 181/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V L  R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLPRRAWLEQTQSEVRQNF-------------LH 221

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VGQ ++ +I+      +++   RR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLPRRAWLEQTQSEVRQNFLHQLQ 224

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|340359951|ref|ZP_08682422.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 448 str. F0400]
 gi|339883718|gb|EGQ73550.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 448 str. F0400]
          Length = 484

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 188/412 (45%), Gaps = 66/412 (16%)

Query: 1017 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1066
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERVKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHL 1245
                       ++ K++E+ +      +V LS R+ L+   S   +S L T         
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRTSFLQT--------- 205

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
                 L    I  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V 
Sbjct: 206  -----LQKGQIRTGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVT 259

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1364
              VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E
Sbjct: 260  VEVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVE 314

Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  + GL H+SEL++ HV+  E + + G++V VK++ +D ++RRISL +K +
Sbjct: 315  D-GIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQA 365



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G +  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQIRTGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 264

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSL 362



 Score = 47.8 bits (112), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 151/349 (43%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERVKEE-DGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R S    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRTSFLQTLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQIRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+          +   VG  V   ++D++ +  RI+LSLKQ+
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQA 365



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 143/369 (38%), Gaps = 60/369 (16%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G + K+++    +      +G     EL +    +P  +  VG  ++  ++      
Sbjct: 38  IVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKEDKE 97

Query: 523 RRINLSFMMKP--------TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 574
            R+ LS              RV E+D V  GS++      V    +++ +  +G+    +
Sbjct: 98  GRLLLSKKRAQYERAWGTIERVKEEDGVVTGSVIE-----VVKGGLILDIGLRGF----L 148

Query: 575 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL-PSDAS 632
           P    A  +E   V       G E + +++ LD   +N++LS +  L  +  ++  S   
Sbjct: 149 P----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRTSFLQ 204

Query: 633 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
            +    +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L
Sbjct: 205 TLQKGQIRTGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 263

Query: 693 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 752
           DV+ +  R++LSLK +      A F + H                           IG V
Sbjct: 264 DVDFDRERVSLSLKATQEDPWQA-FARTH--------------------------AIGQV 296

Query: 753 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKA 805
           + GKV +   FG  V  E+   + G +   +LA   VE        G  +   ++D+   
Sbjct: 297 VPGKVTKLVPFGAFVRVEDG--IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLD 354

Query: 806 ERLVDLSLK 814
            R + LSLK
Sbjct: 355 RRRISLSLK 363


>gi|118472813|ref|YP_888124.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|399988146|ref|YP_006568496.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|441210769|ref|ZP_20974767.1| 30S ribosomal protein S1 [Mycobacterium smegmatis MKD8]
 gi|118174100|gb|ABK74996.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|399232708|gb|AFP40201.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|440626699|gb|ELQ88527.1| 30S ribosomal protein S1 [Mycobacterium smegmatis MKD8]
          Length = 479

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 149/376 (39%), Gaps = 46/376 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 813 LKTVFIDRFREANSNR 828
           LK    D   E + ++
Sbjct: 362 LKQANEDYTEEFDPSK 377



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|389611195|dbj|BAM19209.1| unknown unsecreted protein [Papilio polytes]
          Length = 111

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 68/103 (66%)

Query: 1704 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1763
            +  + + A LE   G A+R  ++ + +L+ YP R D+ ++Y+D  I+  D++ IR L ER
Sbjct: 5    VSLLVRFAQLERGCGAAERAAALLDHVLAAYPHRVDVAALYVDMLIKSNDIEQIRQLMER 64

Query: 1764 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806
              S  LP +KMK LFKK++E E+ +G  +++E ++++A+E++E
Sbjct: 65   MTSQKLPARKMKVLFKKWIEVEEKIGNHQQVENIRKRAVEFIE 107


>gi|395240782|ref|ZP_10417806.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
 gi|394475564|emb|CCI87783.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
          Length = 400

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 95/161 (59%), Gaps = 6/161 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +V+G V  +T+ G FI +   +D  V +S +S  +++ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHIDKPSDALRVGQDVKVKVIGIDDDR 258

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +++K ++     Q+     S+L+ GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TSSLNEGDVFEGEVKSLTNFGAFVEVTD-GIQGLVHVS 313

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            E+S  HVD    + + G+ VKVK+L +D  ++RISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSIKAT 354



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 10/160 (6%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G VV+GKV  + +FGA +   GGV  L  +  +S   I KP    +VG ++  +V+G+  
Sbjct: 198 GDVVEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHIDKPSDALRVGQDVKVKVIGIDD 256

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAP 489
            R    H+ +L   K    S + +AT  L    +  G +  +   G FV   +G+QG   
Sbjct: 257 DR----HRISL-SIKQTEPSPFEQATSSLNEGDVFEGEVKSLTNFGAFVEVTDGIQGLVH 311

Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
            SE+      +PS +  VGQ VK ++++  P+ +RI+LS 
Sbjct: 312 VSEISNKHVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSI 351



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 95/439 (21%), Positives = 188/439 (42%), Gaps = 71/439 (16%)

Query: 931  KKKSSYDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIG 989
            K+    +VG +V  E+ +++  +L +     G  G I   E   D++    +L    K G
Sbjct: 13   KQMQGVEVGDIVDVEVLDVEDGQLDVGVVNAGVEGVITRREFTTDRN---ADLTELVKPG 69

Query: 990  QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1049
            +T+ A ++ ++        F + ++     L   E   KL   + D   G  + G V   
Sbjct: 70   ETIKALVLKRAGGDKENGEFFFSVT----RLKEREAFDKL---QKDFEEGNAIEGTVTSS 122

Query: 1050 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1109
                 L+ +         ++ S Y  S+L+ +     IGK +   +  I+  K   RL+L
Sbjct: 123  VRGGLLVDVGTRGFLPASLISSRY-VSDLKPY-----IGKTMKLKITEIDPNKN--RLIL 174

Query: 1110 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1169
               +D + ++  + + D + + +  GD+V G++S++ +   G  + +G  + G VH +E+
Sbjct: 175  -SHKDLVEEEREE-AFDKVASQLVVGDVVEGKVSRLTNF--GAFIDVG-GVDGLVHISEI 229

Query: 1170 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1229
                +  P         D L     GQ VK KV+ I         + LS++ +       
Sbjct: 230  SYKHIDKP--------SDALR---VGQDVKVKVIGIDDD---RHRISLSIKQT------- 268

Query: 1230 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1289
                       P    +    L+   + +G VK++T+ G F+ ++  +   V +S +S+ 
Sbjct: 269  ----------EPSPFEQATSSLNEGDVFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNK 318

Query: 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE--------------- 1334
            +V+ P     +G+ V  +VL+++P  KR+ +++K ++   AS+S                
Sbjct: 319  HVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSIKATEENAASESARPRRPRTDNSVNKKY 378

Query: 1335 INNLSN-LHVGDIVIGQIK 1352
            +NN  N   +GDI+  Q+K
Sbjct: 379  MNNDDNGFALGDIIGDQLK 397



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 152/373 (40%), Gaps = 65/373 (17%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 538
           GV+G   R E   D   + + +   G+ +K  ++      +  N  F    TR+ E    
Sbjct: 44  GVEGVITRREFTTDRNADLTELVKPGETIKALVLKRAGGDKE-NGEFFFSVTRLKEREAF 102

Query: 539 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGT-IPTEHLADHLEHATVMKSVIK 594
           D L K    G+ + G V       ++V V  +G+   + I + +++D       +K  I 
Sbjct: 103 DKLQKDFEEGNAIEGTVTSSVRGGLLVDVGTRGFLPASLISSRYVSD-------LKPYIG 155

Query: 595 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGC 652
              +  ++  +D   + L+LS K  L+   ++   D  AS +    VV G V  +   G 
Sbjct: 156 KTMKL-KITEIDPNKNRLILSHK-DLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGA 213

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           F+  +G + G    S+         S    VGQ V+  ++ ++ +  RI+LS+KQ+  S 
Sbjct: 214 FID-VGGVDGLVHISEISYKHIDKPSDALRVGQDVKVKVIGIDDDRHRISLSIKQTEPS- 271

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 772
               F Q    L E                       G V EG+V    +FG   +F E 
Sbjct: 272 ---PFEQATSSLNE-----------------------GDVFEGEVKSLTNFG---AFVEV 302

Query: 773 SD-VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 824
           +D + G +   +++   V+        G  ++  +L++  +E+ + LS+K        E 
Sbjct: 303 TDGIQGLVHVSEISNKHVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSIKAT------EE 356

Query: 825 NSNRQAQKKKRKR 837
           N+  ++ + +R R
Sbjct: 357 NAASESARPRRPR 369



 Score = 40.4 bits (93), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 127/312 (40%), Gaps = 34/312 (10%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           E+VKPG+  K    LV +  G   +        T +K + A      +  +     G +T
Sbjct: 64  ELVKPGETIKA---LVLKRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNAIEGTVT 120

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 523
              + G  V    G +GF P S +        SS Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SSRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 524 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R+ LS   +++  R    D V     +G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            ++   +H       ++ G +   +++ +D++   + LS K +  +  +Q     S ++ 
Sbjct: 228 EIS--YKHIDKPSDALRVGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQA---TSSLNE 282

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNKHVDKPSDVLKVGQNVKVKVLNIDP 342

Query: 697 ETGRITLSLKQS 708
              RI+LS+K +
Sbjct: 343 SEKRISLSIKAT 354


>gi|392944252|ref|ZP_10309894.1| ribosomal protein S1 [Frankia sp. QA3]
 gi|392287546|gb|EIV93570.1| ribosomal protein S1 [Frankia sp. QA3]
          Length = 493

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 190/422 (45%), Gaps = 67/422 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 24   VAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSI 83

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 84   KHDVDPHEV------VSVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 130

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 131  KLKDEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 181

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 182  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LA 217

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 218  QLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 276

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   +
Sbjct: 277  DVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRVDE-GI 330

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1428
             GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +   N+A  L + 
Sbjct: 331  EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NEASGLAVD 387

Query: 1429 SE 1430
             E
Sbjct: 388  GE 389



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 143/364 (39%), Gaps = 50/364 (13%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDKE 110

Query: 523 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKDEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 222

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 758 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 810
            +   FG  V  +E   + G +   +LA   VE        G  I   ++D+    R + 
Sbjct: 315 TKLVPFGAFVRVDEG--IEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRIS 372

Query: 811 LSLK 814
           LSLK
Sbjct: 373 LSLK 376



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 149/352 (42%), Gaps = 31/352 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKED 108

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKD-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 220

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEAS 382


>gi|15608768|ref|NP_216146.1| 30S ribosomal protein S1 RpsA [Mycobacterium tuberculosis H37Rv]
 gi|15841085|ref|NP_336122.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
 gi|148661425|ref|YP_001282948.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|148822837|ref|YP_001287591.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis F11]
 gi|167968417|ref|ZP_02550694.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|253799332|ref|YP_003032333.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 1435]
 gi|254231831|ref|ZP_04925158.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
 gi|254364480|ref|ZP_04980526.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
            Haarlem]
 gi|254550636|ref|ZP_05141083.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis '98-R604
            INH-RIF-EM']
 gi|289443082|ref|ZP_06432826.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
 gi|289447238|ref|ZP_06436982.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
 gi|289569675|ref|ZP_06449902.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
 gi|289574297|ref|ZP_06454524.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
 gi|289745933|ref|ZP_06505311.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
 gi|289750175|ref|ZP_06509553.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
 gi|289753717|ref|ZP_06513095.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
 gi|289757732|ref|ZP_06517110.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
 gi|289761778|ref|ZP_06521156.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
 gi|294996579|ref|ZP_06802270.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 210]
 gi|297634183|ref|ZP_06951963.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 4207]
 gi|297731170|ref|ZP_06960288.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN R506]
 gi|298525126|ref|ZP_07012535.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis 94_M4241A]
 gi|306784360|ref|ZP_07422682.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
 gi|306788728|ref|ZP_07427050.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
 gi|306793065|ref|ZP_07431367.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
 gi|306797447|ref|ZP_07435749.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
 gi|307084210|ref|ZP_07493323.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
 gi|313658502|ref|ZP_07815382.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN V2475]
 gi|339631686|ref|YP_004723328.1| 30S ribosomal protein S1 [Mycobacterium africanum GM041182]
 gi|375296577|ref|YP_005100844.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207]
 gi|385991029|ref|YP_005909327.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5180]
 gi|385994631|ref|YP_005912929.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5079]
 gi|392386301|ref|YP_005307930.1| rpsA [Mycobacterium tuberculosis UT205]
 gi|392432788|ref|YP_006473832.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
 gi|397673484|ref|YP_006515019.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv]
 gi|422812616|ref|ZP_16861000.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A]
 gi|424803967|ref|ZP_18229398.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148]
 gi|424947350|ref|ZP_18363046.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis NCGM2209]
 gi|6226090|sp|O06147.1|RS1_MYCTU RecName: Full=30S ribosomal protein S1
 gi|13881299|gb|AAK45936.1| ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
 gi|124600890|gb|EAY59900.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
 gi|134149994|gb|EBA42039.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
            Haarlem]
 gi|148505577|gb|ABQ73386.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|148721364|gb|ABR05989.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis F11]
 gi|253320835|gb|ACT25438.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 1435]
 gi|289416001|gb|EFD13241.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
 gi|289420196|gb|EFD17397.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
 gi|289538728|gb|EFD43306.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
 gi|289543429|gb|EFD47077.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
 gi|289686461|gb|EFD53949.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
 gi|289690762|gb|EFD58191.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
 gi|289694304|gb|EFD61733.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
 gi|289709284|gb|EFD73300.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
 gi|289713296|gb|EFD77308.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
 gi|298494920|gb|EFI30214.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis 94_M4241A]
 gi|308330908|gb|EFP19759.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
 gi|308334743|gb|EFP23594.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
 gi|308338520|gb|EFP27371.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
 gi|308342191|gb|EFP31042.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
 gi|308366155|gb|EFP55006.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
 gi|323719890|gb|EGB29003.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A]
 gi|326903243|gb|EGE50176.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148]
 gi|328459082|gb|AEB04505.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207]
 gi|339294585|gb|AEJ46696.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5079]
 gi|339298222|gb|AEJ50332.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5180]
 gi|339331042|emb|CCC26714.1| putative ribosomal protein S1 RPSA [Mycobacterium africanum GM041182]
 gi|358231865|dbj|GAA45357.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis NCGM2209]
 gi|378544852|emb|CCE37127.1| rpsA [Mycobacterium tuberculosis UT205]
 gi|379027853|dbj|BAL65586.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis str. Erdman =
            ATCC 35801]
 gi|392054197|gb|AFM49755.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
 gi|395138389|gb|AFN49548.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv]
 gi|440581096|emb|CCG11499.1| putative RIBOSOMAL protein S1 RPSA [Mycobacterium tuberculosis
            7199-99]
 gi|444895138|emb|CCP44394.1| 30S ribosomal protein S1 RpsA [Mycobacterium tuberculosis H37Rv]
          Length = 481

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                + +L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  ++
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNN 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGTIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 807 RLVDLSLK 814
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|404329832|ref|ZP_10970280.1| 30S ribosomal protein S1 [Sporolactobacillus vineae DSM 21990 =
            SL153]
          Length = 387

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 173/387 (44%), Gaps = 64/387 (16%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            +++G  V G V KV+ + AL+ +   +   L I  S      +++     H G  +T  +
Sbjct: 15   LNVGDVVNGKVTKVEEKHALVDVGYKVDGILPI--SELSSLHVEKVSDLLHEGDDITVKI 72

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLV 1153
              +  ++ +L           S + VD     D+++      +     I+ ++ G  GLV
Sbjct: 73   TKMEDDELVL-----------SKREVDADKAWDDLEEKYKNKETFSVEIADVVKG--GLV 119

Query: 1154 VQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1208
            V +G     P      HF E                     S Y +G+ +  K++E+ R 
Sbjct: 120  VDLGVRGFIPASLVERHFVE-------------------DFSDY-KGKPLDVKIVELDRE 159

Query: 1209 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1268
             R      LS R+ LD  +               K  E +  +    +++G V+ +T  G
Sbjct: 160  KRKVI---LSHRAVLDEEADK-------------KKAETLASIKEGDVIEGTVQRLTDFG 203

Query: 1269 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
             F+ +   +D  V +S L+  +VE+P +    G  V  +VLSV+P S+R+ +++K +   
Sbjct: 204  AFVDIG-GVDGLVHISQLAHYHVETPSEVVSEGDKVKVKVLSVDPESERISLSIKATQPG 262

Query: 1329 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
                ++      +H GD + G +KR+  +G F+ +    + GL H+SE+S +H+   E +
Sbjct: 263  PWETAK----DKIHQGDALQGTVKRLVPFGAFVEL-LPGVEGLVHISEISHEHIGTPEEV 317

Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKS 1415
               G+ +KVK+L V+ + +R+SL +K+
Sbjct: 318  LSEGQVIKVKVLDVNFQDQRVSLSIKA 344



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 68/116 (58%), Gaps = 2/116 (1%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
            GK +  +++ ++   ++V ++ +      A + +   L+++  GD++ G ++R+  +G F
Sbjct: 146  GKPLDVKIVELDREKRKVILSHRAVLDEEADKKKAETLASIKEGDVIEGTVQRLTDFGAF 205

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + I   +  GL H+S+L+  HV+    +   G+KVKVK+L VD E  RISL +K++
Sbjct: 206  VDIGGVD--GLVHISQLAHYHVETPSEVVSEGDKVKVKVLSVDPESERISLSIKAT 259



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 14/169 (8%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           T + +K G V++G V  +  FGA V   GGV  L  +  ++ + +  P +    G ++  
Sbjct: 182 TLASIKEGDVIEGTVQRLTDFGAFVDI-GGVDGLVHISQLAHYHVETPSEVVSEGDKVKV 240

Query: 427 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRF 480
           +VL V  +S+RI+++ K T           +  A D++       G + ++   G FV  
Sbjct: 241 KVLSVDPESERISLSIKATQP-------GPWETAKDKIHQGDALQGTVKRLVPFGAFVEL 293

Query: 481 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             GV+G    SE+  +    P  +   GQV+K +++      +R++LS 
Sbjct: 294 LPGVEGLVHISEISHEHIGTPEEVLSEGQVIKVKVLDVNFQDQRVSLSI 342



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 123/281 (43%), Gaps = 54/281 (19%)

Query: 1088 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKI 1145
            GK +   ++ +++EK+ + L  R   D  +DK         +T   I EGD++ G + ++
Sbjct: 146  GKPLDVKIVELDREKRKVILSHRAVLDEEADKK------KAETLASIKEGDVIEGTVQRL 199

Query: 1146 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
                 G  V IG  + G VH ++L +  V  P     EG             VK KVL +
Sbjct: 200  TDF--GAFVDIGG-VDGLVHISQLAHYHVETPSEVVSEGDK-----------VKVKVLSV 245

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
                  +  + LS++++                  PG      + +     +QG VK + 
Sbjct: 246  DPE---SERISLSIKAT-----------------QPGPWETAKDKIHQGDALQGTVKRLV 285

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT- 1324
              G F+ L   ++  V +S +S  ++ +PE+    G+++  +VL V    +RV +++K  
Sbjct: 286  PFGAFVELLPGVEGLVHISEISHEHIGTPEEVLSEGQVIKVKVLDVNFQDQRVSLSIKAL 345

Query: 1325 -----SDSRTASQSEI------NNLSNLHVGDIVIGQIKRV 1354
                 S S++AS  +I      ++ S   +GD++  Q+K++
Sbjct: 346  ENEQPSQSKSASARDIAKATSDDDASGFSLGDMIGDQLKKL 386



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 136/342 (39%), Gaps = 25/342 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G VV GKV  V+   A+V     V  + P+  +S   + K       G ++  ++  ++ 
Sbjct: 18  GDVVNGKVTKVEEKHALVDVGYKVDGILPISELSSLHVEKVSDLLHEGDDITVKITKMED 77

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
             + ++ ++         L    +  +       I  + K G  V    GV+GF P S L
Sbjct: 78  DELVLSKREVDADKAWDDLEEKYKNKETFSVE--IADVVKGGLVVDL--GVRGFIPAS-L 132

Query: 494 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDDL--VKLGSL 547
                 E  S Y  G+ +  +I+      R++ LS       +  +   + L  +K G +
Sbjct: 133 VERHFVEDFSDYK-GKPLDVKIVELDREKRKVILSHRAVLDEEADKKKAETLASIKEGDV 191

Query: 548 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 606
           + G V  +T     V +   G   G +    LA +  H      V+  G +   ++L +D
Sbjct: 192 IEGTVQRLTDFGAFVDI---GGVDGLVHISQLAHY--HVETPSEVVSEGDKVKVKVLSVD 246

Query: 607 NESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 664
            ES  + LS     I + Q  P + +   IH    + G V  ++  G FV  L  + G  
Sbjct: 247 PESERISLS-----IKATQPGPWETAKDKIHQGDALQGTVKRLVPFGAFVELLPGVEGLV 301

Query: 665 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
             S+          +    GQ ++  +LDVN +  R++LS+K
Sbjct: 302 HISEISHEHIGTPEEVLSEGQVIKVKVLDVNFQDQRVSLSIK 343


>gi|31792816|ref|NP_855309.1| 30S ribosomal protein S1 [Mycobacterium bovis AF2122/97]
 gi|121637537|ref|YP_977760.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Pasteur
            1173P2]
 gi|224990012|ref|YP_002644699.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
 gi|378771371|ref|YP_005171104.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Mexico]
 gi|449063688|ref|YP_007430771.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Korea 1168P]
 gi|31618406|emb|CAD96324.1| PROBABLE RIBOSOMAL PROTEIN S1 RPSA [Mycobacterium bovis AF2122/97]
 gi|121493184|emb|CAL71655.1| Probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|224773125|dbj|BAH25931.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341601555|emb|CCC64228.1| probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str.
            Moreau RDJ]
 gi|356593692|gb|AET18921.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Mexico]
 gi|449032196|gb|AGE67623.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Korea 1168P]
          Length = 481

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                + +L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 47.4 bits (111), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 148/372 (39%), Gaps = 58/372 (15%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSV--IKP--GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD 630
                        M+ V  ++P  G E + +++ LD   +N++LS +  L  +  ++ S+
Sbjct: 153 -----------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSE 201

Query: 631 -ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 689
             +++   ++  G V +I+  G FV  LG + G    S+         S+   VG  V  
Sbjct: 202 FLNNLQKGTIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTV 260

Query: 690 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 749
            +LDV+ +  R++LSLK +        F + H                           I
Sbjct: 261 EVLDVDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AI 293

Query: 750 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDV 802
           G ++ GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+
Sbjct: 294 GQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDI 351

Query: 803 AKAERLVDLSLK 814
               R + LSLK
Sbjct: 352 DLERRRISLSLK 363


>gi|118617252|ref|YP_905584.1| 30S ribosomal protein S1 [Mycobacterium ulcerans Agy99]
 gi|183982447|ref|YP_001850738.1| 30S ribosomal protein S1 [Mycobacterium marinum M]
 gi|443491265|ref|YP_007369412.1| 30S ribosomal protein S1 [Mycobacterium liflandii 128FXT]
 gi|118569362|gb|ABL04113.1| ribosomal protein S1 RpsA [Mycobacterium ulcerans Agy99]
 gi|183175773|gb|ACC40883.1| ribosomal protein S1 RpsA [Mycobacterium marinum M]
 gi|442583762|gb|AGC62905.1| 30S ribosomal protein S1 [Mycobacterium liflandii 128FXT]
          Length = 481

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDQTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VTVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVTVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDDQGNYIFPEGFDPETNEWMEGF 407



 Score = 48.9 bits (115), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 148/377 (39%), Gaps = 53/377 (14%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVTVGDEVEALVLTKEDKE 97

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 TIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +            HF          +  H            IG ++ GKV
Sbjct: 269 RERVSLSLKATQEDP------WRHF----------ARTH-----------AIGQIVPGKV 301

Query: 758 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 810
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 811 LSLKTV---FIDRFREA 824
           LSLK     + D F  A
Sbjct: 360 LSLKQANEDYTDEFDPA 376


>gi|111221225|ref|YP_712019.1| 30S ribosomal protein S1 [Frankia alni ACN14a]
 gi|111148757|emb|CAJ60433.1| 30S ribosomal protein S1 [Frankia alni ACN14a]
          Length = 518

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 190/422 (45%), Gaps = 67/422 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 49   VAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSI 108

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 109  KHDVDPHEV------VSVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 155

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 156  KLKDEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 206

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 207  --------LEAKIIELDKN---RNNVVLSRRAWLEQTQSEVRSEF-------------LA 242

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 243  QLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 301

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   +
Sbjct: 302  DVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRVDE-GI 355

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1428
             GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +   N+A  L + 
Sbjct: 356  EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NEASGLAVD 412

Query: 1429 SE 1430
             E
Sbjct: 413  GE 414



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 76  IVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDKE 135

Query: 523 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 136 GRLILSKKRAQYERAWGTIEKLKDEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 190

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 191 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 247

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 248 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 306

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 307 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 339

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 340 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 399

Query: 813 LK 814
           LK
Sbjct: 400 LK 401



 Score = 40.4 bits (93), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 149/352 (42%), Gaps = 31/352 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 74  GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKED 133

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 134 KEGRLILSKKRAQYERAWGTIEKLKD-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 189

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 190 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 245

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 246 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 299

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 300 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 355

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S
Sbjct: 356 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEAS 407


>gi|385998404|ref|YP_005916702.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CTRI-2]
 gi|344219450|gb|AEN00081.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CTRI-2]
          Length = 481

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                + +L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  ++
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNN 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGTIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 807 RLVDLSLK 814
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|339444205|ref|YP_004710209.1| hypothetical protein EGYY_05950 [Eggerthella sp. YY7918]
 gi|338903957|dbj|BAK43808.1| hypothetical protein EGYY_05950 [Eggerthella sp. YY7918]
          Length = 424

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 104/188 (55%), Gaps = 13/188 (6%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L+  M ++G V ++   G F+ L   +D  V +S LS  +V  P +   +G  V   VL 
Sbjct: 204  LTKGMRLKGTVSSIVDFGAFVDLG-GIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLD 262

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
            V+   +R+ + LK    +T     I  + +  VG IV G++ ++  +G FI +   ++ G
Sbjct: 263  VDLQRERISLGLK----QTTEDPWIKLVESYPVGSIVDGKVTKIVPFGAFIEL-GQSIEG 317

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1430
            L H+SE++  H+D    + +AG++VKVK+++++ E+RRISL MK++         ++  E
Sbjct: 318  LVHISEMAMKHIDTPAQVVKAGDEVKVKVMEINPERRRISLSMKAAAS-------ELGFE 370

Query: 1431 EESDEAIE 1438
             E DE+I+
Sbjct: 371  IEVDESIQ 378



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +  GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 202 SKLTKGMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEV 260

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V  + +RI++  K+T     + ++ SY   +   I  G +TKI   G F+     ++G
Sbjct: 261 LDVDLQRERISLGLKQTTEDPWIKLVESYPVGS---IVDGKVTKIVPFGAFIELGQSIEG 317

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SE+ +     P+ +   G  VK ++M   P  RRI+LS 
Sbjct: 318 LVHISEMAMKHIDTPAQVVKAGDEVKVKVMEINPERRRISLSM 360



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 74/366 (20%), Positives = 149/366 (40%), Gaps = 52/366 (14%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G + KIE     V      +G  P  EL +    +PS + ++G  ++  ++      
Sbjct: 36  LVDGTVVKIEHDEVLVDIGFKSEGVIPSRELSIRKDADPSDIVNLGDKIEALVLQKEDKD 95

Query: 523 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
            R+ LS     +     RV E    K G +V+G V  V    +++ +  +G+   ++   
Sbjct: 96  GRLILSKKRAEYERAWIRVEEK--FKAGEVVTGEVIEVVKGGLILDIGLRGFLPASLVDL 153

Query: 578 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 636
                L+    + + I+      +++ +D   +N++LS +  L    +   ++  S +  
Sbjct: 154 RRVKDLD--MYLNTEIEA-----RVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLTK 206

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+ 
Sbjct: 207 GMRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDL 265

Query: 697 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 756
           +  RI+L LKQ+                                +K VE + +GS+++GK
Sbjct: 266 QRERISLGLKQTTEDPW---------------------------IKLVESYPVGSIVDGK 298

Query: 757 VHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERLV 809
           V +   FG  +   +   + G +   ++A          V++G  ++  ++++    R +
Sbjct: 299 VTKIVPFGAFIELGQS--IEGLVHISEMAMKHIDTPAQVVKAGDEVKVKVMEINPERRRI 356

Query: 810 DLSLKT 815
            LS+K 
Sbjct: 357 SLSMKA 362


>gi|336441308|gb|AEI54879.1| 30S ribosomal protein S1 [Mycobacterium immunogenum]
          Length = 481

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ R      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 149/380 (39%), Gaps = 46/380 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LTKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++    V  G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRR 357

Query: 809 VDLSLKTVFIDRFREANSNR 828
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377


>gi|365870180|ref|ZP_09409724.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 = JCM
            15300]
 gi|397679450|ref|YP_006520985.1| 30S ribosomal protein S1 [Mycobacterium massiliense str. GO 06]
 gi|414580037|ref|ZP_11437178.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1215]
 gi|418248590|ref|ZP_12874976.1| 30S ribosomal protein S1 [Mycobacterium abscessus 47J26]
 gi|418420385|ref|ZP_12993566.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii BD]
 gi|419712654|ref|ZP_14240111.1| 30S ribosomal protein S1 [Mycobacterium abscessus M93]
 gi|419715386|ref|ZP_14242790.1| 30S ribosomal protein S1 [Mycobacterium abscessus M94]
 gi|420861808|ref|ZP_15325204.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0303]
 gi|420868499|ref|ZP_15331881.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RA]
 gi|420872943|ref|ZP_15336320.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RB]
 gi|420877185|ref|ZP_15340554.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0304]
 gi|420883048|ref|ZP_15346411.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0421]
 gi|420889059|ref|ZP_15352410.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0422]
 gi|420893374|ref|ZP_15356716.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0708]
 gi|420898783|ref|ZP_15362118.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0817]
 gi|420904588|ref|ZP_15367907.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1212]
 gi|420931348|ref|ZP_15394623.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-151-0930]
 gi|420937500|ref|ZP_15400769.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-152-0914]
 gi|420941605|ref|ZP_15404863.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-153-0915]
 gi|420948277|ref|ZP_15411527.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-154-0310]
 gi|420951858|ref|ZP_15415102.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0626]
 gi|420956028|ref|ZP_15419265.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0107]
 gi|420961691|ref|ZP_15424917.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-1231]
 gi|420971496|ref|ZP_15434691.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0921]
 gi|420989221|ref|ZP_15452377.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0206]
 gi|420991997|ref|ZP_15455145.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0307]
 gi|420997834|ref|ZP_15460972.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-R]
 gi|421002273|ref|ZP_15465399.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-S]
 gi|421037697|ref|ZP_15500709.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-R]
 gi|421043297|ref|ZP_15506298.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-S]
 gi|421049238|ref|ZP_15512233.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 = JCM
            15300]
 gi|183427450|gb|ACC62511.1| S1 ribosomal protein [Mycobacterium abscessus]
 gi|336441304|gb|AEI54877.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii]
 gi|336441310|gb|AEI54880.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii]
 gi|353453083|gb|EHC01477.1| 30S ribosomal protein S1 [Mycobacterium abscessus 47J26]
 gi|363997369|gb|EHM18581.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 = JCM
            15300]
 gi|364000222|gb|EHM21423.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii BD]
 gi|382937435|gb|EIC61789.1| 30S ribosomal protein S1 [Mycobacterium abscessus M93]
 gi|382943954|gb|EIC68264.1| 30S ribosomal protein S1 [Mycobacterium abscessus M94]
 gi|392067969|gb|EIT93816.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RA]
 gi|392071971|gb|EIT97812.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RB]
 gi|392076969|gb|EIU02800.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0303]
 gi|392088676|gb|EIU14496.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0304]
 gi|392090018|gb|EIU15834.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0421]
 gi|392090152|gb|EIU15966.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0422]
 gi|392101964|gb|EIU27751.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0708]
 gi|392106492|gb|EIU32277.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0817]
 gi|392107053|gb|EIU32836.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1212]
 gi|392119861|gb|EIU45628.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1215]
 gi|392136107|gb|EIU61844.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-151-0930]
 gi|392143015|gb|EIU68740.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-152-0914]
 gi|392151087|gb|EIU76799.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-153-0915]
 gi|392155307|gb|EIU81013.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-154-0310]
 gi|392157170|gb|EIU82867.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0626]
 gi|392168207|gb|EIU93886.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0921]
 gi|392183500|gb|EIV09151.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0206]
 gi|392186611|gb|EIV12257.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0307]
 gi|392187546|gb|EIV13187.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-R]
 gi|392197486|gb|EIV23101.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-S]
 gi|392229378|gb|EIV54889.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-R]
 gi|392237149|gb|EIV62643.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-S]
 gi|392241151|gb|EIV66641.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898]
 gi|392251725|gb|EIV77197.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-1231]
 gi|392252927|gb|EIV78395.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0107]
 gi|395457715|gb|AFN63378.1| 30S ribosomal protein S1 [Mycobacterium massiliense str. GO 06]
          Length = 481

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ R      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 149/380 (39%), Gaps = 46/380 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LTKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++    V  G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRR 357

Query: 809 VDLSLKTVFIDRFREANSNR 828
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377


>gi|269127063|ref|YP_003300433.1| RNA binding S1 domain-containing protein [Thermomonospora curvata DSM
            43183]
 gi|268312021|gb|ACY98395.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183]
          Length = 487

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 186/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSAEEFLAAIDETIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPHEV------VKVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+    T S    T ++T         
Sbjct: 172  --------LEAKIIELDKN---RNNVVLSRRAWLE---QTQSEVRQTFLNT--------- 208

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 209  -LQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 266

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ +E   +
Sbjct: 267  DVDMERERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGRVTKLVPFGAFVRVEE-GI 320

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HV+  E + + G+++ VKI+ +D ++RRISL +K +
Sbjct: 321  EGLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLDRRRISLSLKQA 368



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 153/351 (43%), Gaps = 29/351 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  KVG  +   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDHVEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D E   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMERERVSLSLKATQEDPWQQF---ARTHQIGQVVPGRVTKLVPFGAFVRVEEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           G    S+  +       +   VG  +   I+D++ +  RI+LSLKQ+  ++
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLDRRRISLSLKQANETA 372


>gi|433608430|ref|YP_007040799.1| 30S ribosomal protein S1 [Saccharothrix espanaensis DSM 44229]
 gi|407886283|emb|CCH33926.1| 30S ribosomal protein S1 [Saccharothrix espanaensis DSM 44229]
          Length = 498

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 186/411 (45%), Gaps = 64/411 (15%)

Query: 1017 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1066
            P  + +++IG++  F    D +I     G  V G + KVD +  LL I       + ++ 
Sbjct: 14   PKQVAINDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRE 73

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              +    +P+E+        +G  V   VL   KE K  RL+L   +        + +  
Sbjct: 74   LSIKHDVDPNEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWG 120

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 121  TIEALKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 174

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS R+ L+   S   S+             
Sbjct: 175  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF------------ 208

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 209  -LNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 266

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ ++ 
Sbjct: 267  EVLDVDMERERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVDE 321

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+E HV+  E + + G+ V VK++ +D ++RRISL +K +
Sbjct: 322  -GIEGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLSLKQA 371



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 167/392 (42%), Gaps = 36/392 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 42  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKED 101

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 102 KEGRLILSKKRAQYERAWGTIEALKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 157

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 158 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 213

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 214 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 267

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D E   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 268 VLDVDMERERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 323

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASFMQ 719
            G    S+  +       +   VG  V   ++D++ +  RI+LSLKQ+    T D+ F  
Sbjct: 324 EGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLSLKQANEGFTVDSEFDP 383

Query: 720 EHFLL----EEKIAMLQSSKHNGSELKWVEGF 747
             + +    +++   +     +    +W EGF
Sbjct: 384 TQYGMAAEYDDQGNYIYPEGFDPETQEWQEGF 415



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 145/365 (39%), Gaps = 46/365 (12%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++   
Sbjct: 41  DGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKE 100

Query: 520 PASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P 
Sbjct: 101 DKEGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP- 155

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 634
              A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +
Sbjct: 156 ---ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQL 212

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV
Sbjct: 213 QKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDV 271

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 754
           + E  R++LSLK +        F + H                           IG ++ 
Sbjct: 272 DMERERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVP 304

Query: 755 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 809
           GKV +   FG  V  +E  +    I+     H ++    V+ G  +   ++D+    R +
Sbjct: 305 GKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRI 364

Query: 810 DLSLK 814
            LSLK
Sbjct: 365 SLSLK 369


>gi|225619757|ref|YP_002721014.1| 30S ribosomal protein S1 [Brachyspira hyodysenteriae WA1]
 gi|225214576|gb|ACN83310.1| 30S ribosomal protein S1 [Brachyspira hyodysenteriae WA1]
          Length = 554

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 159/360 (44%), Gaps = 17/360 (4%)

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
           +L+ +   G+    +++K   ++ GKV  ++ FGA ++   G      +P+MS  ++V P
Sbjct: 173 LLEETQNAGIETFLNNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVVNP 232

Query: 415 GKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 473
                 G E +F+VL + K  R      K L +             D  I +G +T ++K
Sbjct: 233 KSVISKGEERMFKVLHIDKENRKVDLGLKQLDEDPWGKFVEQYHIGD--IINGEVTNVKK 290

Query: 474 HGCFVRFYNGVQGFAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 531
            G FV+  +G++G    S+L  +     PS     G  ++C+I+    A R++ L     
Sbjct: 291 FGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQV 350

Query: 532 --KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 589
              P    E D   + S V   V  +  N   V+ +  G  +G        D   +   M
Sbjct: 351 KENPWDTVEKDF-PVKSAVKCKVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVNM 406

Query: 590 KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNI 647
           K  +K G E + +++ +D +   + LS K++  +S  +L   A   HP  S+V G V  I
Sbjct: 407 KDYVKEGEEVNMVIMSIDRDKQRIKLSYKHTK-DSPWRLFEKA---HPQGSIVDGTVKAI 462

Query: 648 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
           +++G  V     L G+   S+    + + L +   VG++    + +VN    RI+LS ++
Sbjct: 463 VDSGAIVSLEDDLEGYMHVSQVEIPKGSTLEEVVKVGETYPFVVREVNQSKRRISLSRRE 522



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 93/168 (55%), Gaps = 6/168 (3%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            + +L  N I+ G VKN+   G FI ++   D  + + N+S   V +P+     G+    +
Sbjct: 186  LNNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVVNPKSVISKGEERMFK 245

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            VL ++  +++V++ LK  D     +     +   H+GDI+ G++  V+ +G F+ + +  
Sbjct: 246  VLHIDKENRKVDLGLKQLDEDPWGKF----VEQYHIGDIINGEVTNVKKFGAFVKVAD-G 300

Query: 1368 LVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  IEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLK 348



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 49/300 (16%)

Query: 1125 NDNMQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            N  ++TF++   E DI+ G++  I     G  ++I P   G +    +    V +P S  
Sbjct: 179  NAGIETFLNNLKENDIINGKVKNIEKF--GAFIEITPGFDGFLAIPNMSWDKVVNPKSVI 236

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
             +G+        E  F   KVL I +  R    V+L L+                D D  
Sbjct: 237  SKGE--------ERMF---KVLHIDKENR---KVDLGLKQ--------------LDEDPW 268

Query: 1242 GKHLEK--IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEF 1298
            GK +E+  I D     I+ G V NV   G F+ ++  ++  V +S+LS + +V +P    
Sbjct: 269  GKFVEQYHIGD-----IINGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFV 323

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESY 1357
              G  +  ++L +    +++ + LK          E     +  V   V  ++KR+ +++
Sbjct: 324  KKGAFLECKILDMNAAERKLTLGLKQVKENPWDTVE----KDFPVKSAVKCKVKRIIKNF 379

Query: 1358 GLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             +F  + N  L G+C +S+    +++ N++   + GE+V + I+ +D++K+RI L  K +
Sbjct: 380  AVF-ELPN-GLEGICDISDFDWRNNIVNMKDYVKEGEEVNMVIMSIDRDKQRIKLSYKHT 437



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 110/541 (20%), Positives = 199/541 (36%), Gaps = 82/541 (15%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G + + +    F+ F +  +G   RSE   +P         +G+ ++  I+S     
Sbjct: 31  IVKGKVVQFDDTDVFIDFDSKSEGKIKRSEFDKEP--------TIGEEIEA-IVSGEDDK 81

Query: 523 RRINLSFMMKPTRVSE---DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
             + LS      R S+   D+ VK  + ++GVV  V      V ++     +   P   +
Sbjct: 82  GYVILSKSEIDKRKSQELIDNAVKNNTAITGVVKEVIKGGFKVSIMG---HQAFCPFSQI 138

Query: 580 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 637
              L         I   YEF    V+     ++++S +  L+   Q   + +  +++  N
Sbjct: 139 --DLARGIKEADYIGKEYEF---RVIKKNGRDVVVSRRV-LLEETQNAGIETFLNNLKEN 192

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            +++G V NI + G F+       GF         +  +       G+     +L ++ E
Sbjct: 193 DIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVVNPKSVISKGEERMFKVLHIDKE 252

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             ++ L LKQ               L E+               K+VE + IG +I G+V
Sbjct: 253 NRKVDLGLKQ---------------LDEDPWG------------KFVEQYHIGDIINGEV 285

Query: 758 HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 811
                FG  V   +      H     + +H       V+ G+ ++  ILD+  AER + L
Sbjct: 286 TNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTL 345

Query: 812 SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
            LK V               K+       KD  V   V   V+ + +N+ V  LP     
Sbjct: 346 GLKQV---------------KENPWDTVEKDFPVKSAVKCKVKRIIKNFAVFELPNGLEG 390

Query: 872 IGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 930
           I   S  D+       K ++  G+ V   +M++       +L       S   T  S   
Sbjct: 391 ICDISDFDWRNNIVNMKDYVKEGEEVNMVIMSIDRDKQRIKL-------SYKHTKDSPWR 443

Query: 931 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 990
             + ++  GS+V   +  I      +       G +H+++V   K + +E +    K+G+
Sbjct: 444 LFEKAHPQGSIVDGTVKAIVDSGAIVSLEDDLEGYMHVSQVEIPKGSTLEEV---VKVGE 500

Query: 991 T 991
           T
Sbjct: 501 T 501



 Score = 47.4 bits (111), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 142/353 (40%), Gaps = 51/353 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +VKGKV+  D     + F    +        SEF+     K+  +G E+   V G   
Sbjct: 29  GKIVKGKVVQFDDTDVFIDFDSKSEGKI---KRSEFD-----KEPTIGEEIEAIVSGEDD 80

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
           K   +  K  + K K   L   A   +  IT G + ++ K G  V    G Q F P S++
Sbjct: 81  KGYVILSKSEIDKRKSQELIDNAVKNNTAIT-GVVKEVIKGGFKVSIM-GHQAFCPFSQI 138

Query: 494 GLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 549
            L  G + +   ++G+  + R++      +  SRR+ L         +  + +K   +++
Sbjct: 139 DLARGIKEAD--YIGKEYEFRVIKKNGRDVVVSRRVLLEETQNAGIETFLNNLKENDIIN 196

Query: 550 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLVLDNE 608
           G V  +      +  I  G+  G +   +++   +     KSVI  G E   ++L +D E
Sbjct: 197 GKVKNIEKFGAFIE-ITPGFD-GFLAIPNMS--WDKVVNPKSVISKGEERMFKVLHIDKE 252

Query: 609 SSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
           +  + L  K        QL  D         H   +++G V N+ + G FV+    + G 
Sbjct: 253 NRKVDLGLK--------QLDEDPWGKFVEQYHIGDIINGEVTNVKKFGAFVKVADGIEGL 304

Query: 664 APRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 707
              S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 305 VHVS--------DLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQ 349



 Score = 43.9 bits (102), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 140/332 (42%), Gaps = 68/332 (20%)

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL I+KE + + L L+   +    K V+          H GDI+ G ++ +     G  V
Sbjct: 246  VLHIDKENRKVDLGLKQLDEDPWGKFVEQ--------YHIGDIINGEVTNVKKF--GAFV 295

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
            ++   + G VH ++L           ++    +P     +G F++CK+L+++   R    
Sbjct: 296  KVADGIEGLVHVSDL----------SWNSHVNNPSDFVKKGAFLECKILDMNAAER---- 341

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
             +L+L     G+            + P   +EK  D      V+  VK +        L 
Sbjct: 342  -KLTL-----GLKQVK--------ENPWDTVEK--DFPVKSAVKCKVKRIIKNFAVFELP 385

Query: 1275 RKLDAKVLLS---------NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-T 1324
              L+    +S         N+ D YV+        G+ V   ++S++   +R++++ K T
Sbjct: 386  NGLEGICDISDFDWRNNIVNMKD-YVKE-------GEEVNMVIMSIDRDKQRIKLSYKHT 437

Query: 1325 SDS--RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
             DS  R   ++          G IV G +K +   G  +++E+ +L G  HVS++     
Sbjct: 438  KDSPWRLFEKAHPQ-------GSIVDGTVKAIVDSGAIVSLED-DLEGYMHVSQVEIPKG 489

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              +E + + GE     + +V++ KRRISL  +
Sbjct: 490  STLEEVVKVGETYPFVVREVNQSKRRISLSRR 521


>gi|429328605|gb|AFZ80365.1| hypothetical protein BEWA_032180 [Babesia equi]
          Length = 649

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 112/475 (23%), Positives = 202/475 (42%), Gaps = 68/475 (14%)

Query: 4   QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADAL-DPILDNEIEANEDNLLPTIF 62
           + I+ G  + G VA V    + +     + G  + AD + DP       A +   +P  F
Sbjct: 60  ETITVGSLVLGSVALVTSTGIRVHTLNNIVGFVKNADMVEDP-------AVKTASVP--F 110

Query: 63  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
            +G  V C VL       E+   ++ LS++ SL+ + LS   +  G++L + V S +DHG
Sbjct: 111 SIGSNVVCYVL-------EVKNGQLVLSMKPSLINRYLSFGNLAPGVLLPSTVISHQDHG 163

Query: 123 YILHF------GLPSFTGFLPRNNLAENSGIDVKPGLLLQG--------VVRSIDRTRKV 168
            ++ F      GL  F  +  R +  E +   V   L+ +         VV S++  RK+
Sbjct: 164 VMVSFNVEDKNGLEGFVMYDERED-GEEARESVVSELVKRYPVSSTAYVVVTSVNEERKI 222

Query: 169 V-----YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI----------LENGVM 213
           V     +L   P +++         +S D + PG+++   V  +          L  G  
Sbjct: 223 VKCKWPWLHKSPVSINN-------PLSFDAVKPGLLLHGEVSKVHEKSLDYGLSLPTGYT 275

Query: 214 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ---HKKVNARILFVDPTSRAVGLTLNPYL 270
           +S L   +  +       +F  ++  +D ++   H KV AR+ ++D   + + ++L  +L
Sbjct: 276 ISCLGSLSAYIPASDSLESFKDSDEASDSHEPSMHDKVTARVTYIDSAEKRIHVSLLSHL 335

Query: 271 LHNRAPPSHV-KVGDIYDQSKVVR--VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
           +  + P  H  K   + +  KVV+   + GL LL++  S   +   +  I+DV ++  R 
Sbjct: 336 IKWKGPSGHARKAKGLSNTCKVVKNIPNYGLVLLINNESGEGAEVGFAGINDVIDKS-RD 394

Query: 328 LE-------KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK 380
           ++       K Y  G+    RIL +          LK S          ++  G VV GK
Sbjct: 395 MKIASVLSGKTYAVGTVHSCRILQYSCFSRWNIVSLKESLLNEQYVDPLELSGGDVVDGK 454

Query: 381 VIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
           +  V + G IV+    V    P+ H+++  + +   +F VG  L  RVL    +R
Sbjct: 455 ITKVLNNGVIVEISTRVHGSVPISHLTQVPLTQIPDRFHVGKTLKLRVLRFDYQR 509


>gi|257056579|ref|YP_003134411.1| 30S ribosomal protein S1 [Saccharomonospora viridis DSM 43017]
 gi|256586451|gb|ACU97584.1| SSU ribosomal protein S1P [Saccharomonospora viridis DSM 43017]
          Length = 495

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 189/414 (45%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S + + + V++IG++  F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 11   SSQANQVAVNDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 70

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL   KE K  RL+L   +        + 
Sbjct: 71   SRELSIKHDVDPAEV------VAVGDEVEALVL--QKEDKEGRLILSKKR-----AQYER 117

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 118  AWGTIEELKEKDEPVRGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE- 174

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 175  --------------LEAKIIELDKN---RNNVVLSRRAYLEQTQSEVRSEF--------- 208

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L+   + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ 
Sbjct: 209  ----LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE 263

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 264  VTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 318

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  E + + G +V VK++ +D E+RRISL +K +
Sbjct: 319  VEE-GIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQA 371



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 147/366 (40%), Gaps = 46/366 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 40  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQK 99

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 100 EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGF----LP 155

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 156 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 211

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 212 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 270

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 271 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 303

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++    V+ G+ +   ++D+    R 
Sbjct: 304 PGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRR 363

Query: 809 VDLSLK 814
           + LSLK
Sbjct: 364 ISLSLK 369



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 42  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKED 101

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 102 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 157

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 158 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 213

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 214 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 267

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 268 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 323

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 717
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    S DA F
Sbjct: 324 EGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQANEGYSPDAEF 381


>gi|205373820|ref|ZP_03226622.1| 30S ribosomal protein S1 [Bacillus coahuilensis m4-4]
          Length = 299

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 99/167 (59%), Gaps = 6/167 (3%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +E L  + +++G V+ +T  G F+ +   +D  V +S LS  +VE P      G+ V  +
Sbjct: 103  LESLKQDQVLEGTVQRITDFGAFVDIG-GVDGLVHISQLSHEHVEKPTDVVAEGQAVKVK 161

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            VLSV+  ++R+ +++K  ++     SEI N ++   G ++ G++KR+ SYG FI +    
Sbjct: 162  VLSVDRDNERISLSIK--ETLPGPWSEIANRASK--GSVLEGEVKRIVSYGAFIEL-FPG 216

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + GL H+S+LS  HV     + + G+ VKVK+L V+++ +R+SL +K
Sbjct: 217  VEGLVHISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDDQRLSLSIK 263



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            L +L    ++ G ++R+  +G F+ I   +  GL H+S+LS +HV+    +   G+ VKV
Sbjct: 103  LESLKQDQVLEGTVQRITDFGAFVDIGGVD--GLVHISQLSHEHVEKPTDVVAEGQAVKV 160

Query: 1398 KILKVDKEKRRISLGMKSS 1416
            K+L VD++  RISL +K +
Sbjct: 161  KVLSVDRDNERISLSIKET 179



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K   V++G V  +  FGA V   GGV  L  +  +S   + KP      G  +  +VL 
Sbjct: 106 LKQDQVLEGTVQRITDFGAFVDI-GGVDGLVHISQLSHEHVEKPTDVVAEGQAVKVKVLS 164

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V   ++RI+++ K+TL      I +  ++ +   +  G + +I  +G F+  + GV+G  
Sbjct: 165 VDRDNERISLSIKETLPGPWSEIANRASKGS---VLEGEVKRIVSYGAFIELFPGVEGLV 221

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             S+L       P  +   GQ VK +++      +R++LS 
Sbjct: 222 HISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDDQRLSLSI 262



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 36/206 (17%)

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
            G  V IG  + G VH ++L +  V  P         D ++   EGQ VK KVL + R   
Sbjct: 123  GAFVDIGG-VDGLVHISQLSHEHVEKPT--------DVVA---EGQAVKVKVLSVDRD-- 168

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
                + LS++ +L                 PG   E     S   +++G VK + S G F
Sbjct: 169  -NERISLSIKETL-----------------PGPWSEIANRASKGSVLEGEVKRIVSYGAF 210

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            I L   ++  V +S LS  +V +P +    G+ V  +VL V    +R+ +++K  + +  
Sbjct: 211  IELFPGVEGLVHISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDDQRLSLSIKELEEKPV 270

Query: 1331 SQSEINNL----SNLHVGDIVIGQIK 1352
             + E   L    S   +G+++  ++K
Sbjct: 271  QEVEKYELPEENSGFQLGEMIGDKLK 296



 Score = 43.9 bits (102), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 3/107 (2%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
           ++L +D ++  + LS K +L     ++ + AS     SV+ G V  I+  G F+     +
Sbjct: 161 KVLSVDRDNERISLSIKETLPGPWSEIANRAS---KGSVLEGEVKRIVSYGAFIELFPGV 217

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            G    S+          +    GQSV+  +LDVN +  R++LS+K+
Sbjct: 218 EGLVHISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDDQRLSLSIKE 264


>gi|41407423|ref|NP_960259.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            K-10]
 gi|118464486|ref|YP_882336.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
 gi|254775602|ref|ZP_05217118.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. avium ATCC
            25291]
 gi|417750612|ref|ZP_12398967.1| ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            S397]
 gi|41395775|gb|AAS03642.1| RpsA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165773|gb|ABK66670.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
 gi|336457775|gb|EGO36769.1| ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            S397]
          Length = 480

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 144/368 (39%), Gaps = 50/368 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 807 RLVDLSLK 814
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|336441302|gb|AEI54876.1| 30S ribosomal protein S1 [Mycobacterium franklinii]
          Length = 481

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ R      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 149/380 (39%), Gaps = 46/380 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LTKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++    V  G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRR 357

Query: 809 VDLSLKTVFIDRFREANSNR 828
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377


>gi|169629382|ref|YP_001703031.1| 30S ribosomal protein S1 [Mycobacterium abscessus ATCC 19977]
 gi|420909888|ref|ZP_15373201.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-R]
 gi|420916343|ref|ZP_15379647.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-S]
 gi|420920887|ref|ZP_15384184.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-S]
 gi|420927169|ref|ZP_15390451.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-1108]
 gi|420966669|ref|ZP_15429874.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0810-R]
 gi|420977508|ref|ZP_15440687.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0212]
 gi|420982889|ref|ZP_15446058.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-R]
 gi|421007295|ref|ZP_15470407.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0119-R]
 gi|421012807|ref|ZP_15475894.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-R]
 gi|421017716|ref|ZP_15480776.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-S]
 gi|421023271|ref|ZP_15486318.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0731]
 gi|421029448|ref|ZP_15492482.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-R]
 gi|421033301|ref|ZP_15496323.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-S]
 gi|169241349|emb|CAM62377.1| 30S ribosomal protein S1 [Mycobacterium abscessus]
 gi|336441300|gb|AEI54875.1| 30S ribosomal protein S1 [Mycobacterium abscessus]
 gi|392120483|gb|EIU46249.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-S]
 gi|392122262|gb|EIU48027.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-R]
 gi|392130723|gb|EIU56469.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-S]
 gi|392134402|gb|EIU60143.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-1108]
 gi|392166708|gb|EIU92391.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0212]
 gi|392172369|gb|EIU98040.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-R]
 gi|392200224|gb|EIV25831.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0119-R]
 gi|392205347|gb|EIV30931.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-R]
 gi|392210502|gb|EIV36069.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-S]
 gi|392214240|gb|EIV39792.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0731]
 gi|392228953|gb|EIV54465.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-R]
 gi|392229842|gb|EIV55352.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-S]
 gi|392252110|gb|EIV77579.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0810-R]
          Length = 481

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ R      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 148/376 (39%), Gaps = 46/376 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  EE  +    I+     H ++    V  G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLS 361

Query: 813 LKTVFIDRFREANSNR 828
           LK    D   E + ++
Sbjct: 362 LKQANEDYTEEFDPSK 377


>gi|400537313|ref|ZP_10800846.1| 30S ribosomal protein S1 [Mycobacterium colombiense CECT 3035]
 gi|400329342|gb|EJO86842.1| 30S ribosomal protein S1 [Mycobacterium colombiense CECT 3035]
          Length = 478

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.9 bits (115), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 148/381 (38%), Gaps = 53/381 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 807 RLVDLSLKTV---FIDRFREA 824
           R + LSLK     + D F  A
Sbjct: 356 RRISLSLKQANEDYTDEFDPA 376


>gi|406031209|ref|YP_006730099.1| 30S ribosomal protein S1 [Mycobacterium indicus pranii MTCC 9506]
 gi|405129756|gb|AFS15011.1| 30S ribosomal protein S1 [Mycobacterium indicus pranii MTCC 9506]
          Length = 480

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 148/381 (38%), Gaps = 53/381 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 807 RLVDLSLKTV---FIDRFREA 824
           R + LSLK     + D F  A
Sbjct: 356 RRISLSLKQANEDYTDEFDPA 376


>gi|254820984|ref|ZP_05225985.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
          Length = 479

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 148/381 (38%), Gaps = 53/381 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 807 RLVDLSLKTV---FIDRFREA 824
           R + LSLK     + D F  A
Sbjct: 356 RRISLSLKQANEDYTDEFDPA 376


>gi|429758811|ref|ZP_19291324.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 181 str. F0379]
 gi|429173025|gb|EKY14562.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 181 str. F0379]
          Length = 485

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 188/418 (44%), Gaps = 56/418 (13%)

Query: 1014 SIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLF 1067
            ++    + V++IGS+  L    D +I     G  V G V KVD++  LL I    K +  
Sbjct: 9    AVSTPQVAVNDIGSREDLLAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEGV 66

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
            IL                 +G  +   VL   KE K  RL+L   +        + +   
Sbjct: 67   ILSRELSIKHDVNPDDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWGQ 119

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
            ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +     
Sbjct: 120  IEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE----- 172

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
                      ++ K++E+ +      +V LS R+ L+   S   ++              
Sbjct: 173  ----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------- 206

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   
Sbjct: 207  LHTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVE 265

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1366
            VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+ 
Sbjct: 266  VLDVDMDRERVSLSLKAT-----QEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVED- 319

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1424
             + GL H+SEL++ HV+  E + + G++V VK++ +D E+RRISL +K +  + D ++
Sbjct: 320  GIEGLVHISELAQRHVELPEQVVKVGDEVFVKVIDIDLERRRISLSLKQANERVDPNS 377



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 7/173 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H+ ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+ 
Sbjct: 206 FLHT-LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 263

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      +  G +TK+   G FVR  +G
Sbjct: 264 VEVLDVDMDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDG 320

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 536
           ++G    SEL       P  +  VG  V  +++      RRI+LS      RV
Sbjct: 321 IEGLVHISELAQRHVELPEQVVKVGDEVFVKVIDIDLERRRISLSLKQANERV 373



 Score = 47.8 bits (112), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 143/367 (38%), Gaps = 56/367 (15%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G + K++     +      +G     EL +     P  +  VG  ++  ++      
Sbjct: 42  IVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKEDKE 101

Query: 523 RRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 574
            R+ LS           +  +V E+D      +V+G V  V    +++ +  +G+   ++
Sbjct: 102 GRLLLSKKRAQYERAWGQIEKVKEED-----GVVTGTVIEVVKGGLILDIGLRGFLPASL 156

Query: 575 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 633
                   +E   V       G E + +++ LD   +N++LS +  L  +  ++ ++  H
Sbjct: 157 --------VEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLH 208

Query: 634 -IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
            +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L
Sbjct: 209 TLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 267

Query: 693 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 752
           DV+ +  R++LSLK +       +F + H                           IG V
Sbjct: 268 DVDMDRERVSLSLK-ATQEDPWQTFARTH--------------------------AIGQV 300

Query: 753 IEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAER 807
           + GKV +   FG  V  E+  +    I+     H +L    V+ G  +   ++D+    R
Sbjct: 301 VPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPEQVVKVGDEVFVKVIDIDLERR 360

Query: 808 LVDLSLK 814
            + LSLK
Sbjct: 361 RISLSLK 367



 Score = 44.3 bits (103), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 40  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKED 99

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 100 KEGRLLLSKKRAQYERAWGQIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 155

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 156 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 211

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 212 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 265

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 266 VLDVDMDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 321

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 322 EGLVHISELAQRHVELPEQVVKVGDEVFVKVIDIDLERRRISLSLKQA 369



 Score = 40.8 bits (94), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 130/304 (42%), Gaps = 48/304 (15%)

Query: 1040 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1090
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R      +IG+ 
Sbjct: 114  ERAWGQIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLAPYIGRE 172

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
            +   ++ ++K +  + L  R +   +     ++  + + T + +G +  G +S I++   
Sbjct: 173  IEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLHT-LQKGQVRSGVVSSIVNF-- 226

Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
            G  V +G  + G VH +EL    +  P    + GQ            V  +VL++     
Sbjct: 227  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE-----------VTVEVLDVDMDRE 274

Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
                V LSL+++ +    T +   +     PGK                 V  +   G F
Sbjct: 275  ---RVSLSLKATQEDPWQTFARTHAIGQVVPGK-----------------VTKLVPFGAF 314

Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
            + +   ++  V +S L+  +VE PE+   +G  V  +V+ ++   +R+ ++LK ++ R  
Sbjct: 315  VRVEDGIEGLVHISELAQRHVELPEQVVKVGDEVFVKVIDIDLERRRISLSLKQANERVD 374

Query: 1331 SQSE 1334
              SE
Sbjct: 375  PNSE 378


>gi|332637853|ref|ZP_08416716.1| SSU ribosomal protein S1P [Weissella cibaria KACC 11862]
          Length = 410

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 42/282 (14%)

Query: 1136 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1195
            DIV   +++++ G  GLVV +   + G V  + ++N  V D            L+ Y +G
Sbjct: 114  DIVEAPVTQVVKG--GLVVDV-EGVRGFVPASMIENRFVQD------------LNQY-KG 157

Query: 1196 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
            Q ++ K++EI+        + LS R   D ++   S+ L+              +LS   
Sbjct: 158  QTIRAKIIEINAA---DSRLILSRR---DVLNEERSAALA----------RVFNELSVGD 201

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +V+G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  
Sbjct: 202  VVEGKVARMTNFGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLDPEK 260

Query: 1316 KRVEVTLKTSDSRT--ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
            +R+ +++K +      A+ SE         G ++ G +KRV  +G F+ +    + GL H
Sbjct: 261  ERISLSIKATQPGPWEAAASEAPE------GTVLEGTVKRVVDFGAFVEV-FPGVEGLVH 313

Query: 1374 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            VS++S  H+ N   + +AG+KVKVK+L+V+ +K+R+SL +K+
Sbjct: 314  VSQISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSLSIKA 355



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
            G+ +  +++ +     R+ ++ +   ++ R+A+ + + N   L VGD+V G++ R+ ++G
Sbjct: 157  GQTIRAKIIEINAADSRLILSRRDVLNEERSAALARVFN--ELSVGDVVEGKVARMTNFG 214

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             FI +   +  GL HVSE+S + V     +   GE VKVK+L +D EK RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKAT 270



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
           G VV+GKV  + +FGA +   GGV  L  +  +S   + +P     VG ++  +VLG+  
Sbjct: 200 GDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLDP 258

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           + +RI+++ K T      A  S   E T   +  G + ++   G FV  + GV+G    S
Sbjct: 259 EKERISLSIKATQPGPWEAAASEAPEGT---VLEGTVKRVVDFGAFVEVFPGVEGLVHVS 315

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++       PS +   G  VK +++   P  +R++LS 
Sbjct: 316 QISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSLSI 353



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 30/230 (13%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL-ADHLEHAT-VMKSVIKPGYEF 599
           VK+G +V G V  +     V+  I     +G IP   L AD   +   ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELTADRDANVNDLVKVGDVLDLVV 77

Query: 600 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
              +  D E  + LLS +   + + +     AS  + + +V   V  +++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEG- 134

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS +             
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRD------------ 180

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
              L EE+ A L          +      +G V+EGKV    +FG  +  
Sbjct: 181 --VLNEERSAALA---------RVFNELSVGDVVEGKVARMTNFGAFIDL 219



 Score = 41.2 bits (95), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 149/356 (41%), Gaps = 35/356 (9%)

Query: 369 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           ++VK G VVKG+V+A+D +   IV   G GV+ + P+  ++        +   V   +  
Sbjct: 16  AEVKVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELT------ADRDANVNDLVKV 69

Query: 427 RVLGVKSKRITVTHKKT-----LVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCF 477
             +       T+   K      L K +L    ++ E   +     I    +T++ K G  
Sbjct: 70  GDVLDLVVVSTIGSDKEGGSYLLSKRRLEARRAWEEIASKHNVDDIVEAPVTQVVKGGLV 129

Query: 478 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTR 535
           V    GV+GF P S +  +   +  + Y  GQ ++ +I+    A  R+ LS   ++   R
Sbjct: 130 VDV-EGVRGFVPASMI-ENRFVQDLNQYK-GQTIRAKIIEINAADSRLILSRRDVLNEER 186

Query: 536 VSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 591
            +    V     +G +V G V  +T     + +   G   G +    ++   E  +    
Sbjct: 187 SAALARVFNELSVGDVVEGKVARMTNFGAFIDL---GGVDGLVHVSEISH--ERVSQPSD 241

Query: 592 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 650
           V+  G +   ++L LD E   + LS K +     +   S+A      +V+ G V  +++ 
Sbjct: 242 VLSVGEDVKVKVLGLDPEKERISLSIKATQPGPWEAAASEAPE---GTVLEGTVKRVVDF 298

Query: 651 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           G FV     + G    S+      A+ S     G  V+  +L+VN +  R++LS+K
Sbjct: 299 GAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSLSIK 354


>gi|336178098|ref|YP_004583473.1| RNA binding S1 domain-containing protein [Frankia symbiont of Datisca
            glomerata]
 gi|334859078|gb|AEH09552.1| RNA binding S1 domain protein [Frankia symbiont of Datisca glomerata]
          Length = 484

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 188/417 (45%), Gaps = 67/417 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 15   VAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 74

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 75   KHDVDPHEV------VTVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 121

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 122  KLKEEDGVVNGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 172

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 173  --------LEAKIIELDKN---RNNVVLSRRAWLEQTQSEVRSEF-------------LA 208

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 209  QLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 267

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  +
Sbjct: 268  DVDLERERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRV-DEGI 321

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
             GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +   ND+  L
Sbjct: 322  EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NDSSAL 375



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 42  IVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKEDKE 101

Query: 523 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 102 GRLILSKKRAQYERAWGTIEKLKEEDGVVNGTVIEVVKGGLILDIGLRGFLPASL----- 156

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 157 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 213

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ E
Sbjct: 214 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLE 272

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 273 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 305

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 306 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 365

Query: 813 LK 814
           LK
Sbjct: 366 LK 367



 Score = 47.4 bits (111), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 147/353 (41%), Gaps = 31/353 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 40  GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKED 99

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E     + +G + ++ K G  +    G++GF P S
Sbjct: 100 KEGRLILSKKRAQYERAWGTIEKLKEEDG--VVNGTVIEVVKGGLILDI--GLRGFLPAS 155

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 156 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 211

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 212 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 265

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D E   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 266 VLDVDLERERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 321

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  SS 
Sbjct: 322 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANDSSA 374


>gi|172040820|ref|YP_001800534.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
 gi|448823792|ref|YP_007416958.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7111]
 gi|171852124|emb|CAQ05100.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
 gi|448277289|gb|AGE36713.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7111]
          Length = 486

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD++  LL I       + ++   +    +P+E+ E      +G  +   
Sbjct: 34   GDIVEGTIVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVE------VGDEIDAL 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++      + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEQLKENDEPVTGTVIEVVKG--GLIL 138

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG---------------QEIEAKIIELDKHRN---N 180

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAYLEETQSAVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + I   GE
Sbjct: 282  WRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQIVNVGE 340

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +V VK++ +D E+RRISL +K +
Sbjct: 341  EVMVKVIDIDLERRRISLSLKQA 363



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 166/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTIVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVEVGDEIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEQLKE-NDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAYLEETQSAVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+  +       +   VG+ V   ++D++ E  RI+LSLKQ+     D  F +
Sbjct: 315 IEGLVHISELAERHVEVPDQIVNVGEEVMVKVIDIDLERRRISLSLKQA-----DEDFTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|336441306|gb|AEI54878.1| 30S ribosomal protein S1 [Mycobacterium chelonae]
          Length = 481

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ R      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 150/380 (39%), Gaps = 46/380 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LTKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++    V  G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRR 357

Query: 809 VDLSLKTVFIDRFREANSNR 828
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377


>gi|339448321|ref|ZP_08651877.1| 30S ribosomal protein S1 [Lactobacillus fructivorans KCTC 3543]
          Length = 406

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 6/165 (3%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L P  IV+G V  +T+ G F+ L   +D  V +S +S  +V  P     +G+ V  +VLS
Sbjct: 201  LKPGDIVEGKVARLTNFGAFVDLG-GIDGLVHVSEISYEHVNKPSDVLKVGEEVKVKVLS 259

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
            V+P   R+ +++K +     S  E         G ++ G++KR+  +G F+ +    + G
Sbjct: 260  VDPDRNRISLSIKQTQPGPWSDIE----EKAPKGSVLDGKVKRLVDFGAFVEV-FPGVEG 314

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            L H+S++S  H+D    + ++GE VKVK+L V  E+ R++L MK+
Sbjct: 315  LVHISQISHKHIDKPSDVLKSGEDVKVKVLDVQPEEHRLALSMKA 359



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            +S L  GDIV G++ R+ ++G F+ +   +  GL HVSE+S +HV+    + + GE+VKV
Sbjct: 198  MSTLKPGDIVEGKVARLTNFGAFVDLGGID--GLVHVSEISYEHVNKPSDVLKVGEEVKV 255

Query: 1398 KILKVDKEKRRISLGMKSS 1416
            K+L VD ++ RISL +K +
Sbjct: 256  KVLSVDPDRNRISLSIKQT 274



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +KPG +V+GKV  + +FGA V   GG+  L  +  +S   + KP    KVG E+  +V
Sbjct: 199 STLKPGDIVEGKVARLTNFGAFVDL-GGIDGLVHVSEISYEHVNKPSDVLKVGEEVKVKV 257

Query: 429 LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V     RI+++ K+T       I     + +   +  G + ++   G FV  + GV+G
Sbjct: 258 LSVDPDRNRISLSIKQTQPGPWSDIEEKAPKGS---VLDGKVKRLVDFGAFVEVFPGVEG 314

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               S++      +PS +   G+ VK +++   P   R+ LS 
Sbjct: 315 LVHISQISHKHIDKPSDVLKSGEDVKVKVLDVQPEEHRLALSM 357



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 156/391 (39%), Gaps = 54/391 (13%)

Query: 446 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--VQGFAPRSELGLDPGCEPSS 503
           K  LA L +  +     + +G +  I+     V    G  V+G  PR E+       P+S
Sbjct: 10  KDLLAALDNIKQVNVGYVVNGEVLAIDDDQQLVVGIEGAGVEGVIPRKEISAQREDNPTS 69

Query: 504 MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---DLVKLGSLVSGVVDVVTPNAV 560
            Y VG  VK  ++S I   +    S+++   R+      D +K  +     ++V    AV
Sbjct: 70  NYKVGDKVKVVVVSRIGDDKE-GGSYLLSIRRLEALKVWDEIKEKADKGETINVTVTRAV 128

Query: 561 V--VYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 617
              + V A G  +G IP   + DH ++     K     G E +  ++      N L+ + 
Sbjct: 129 KGGLVVNADGV-RGFIPASMITDHFVDDLNQFK-----GQELEVKIIEVVPEENRLILSH 182

Query: 618 YSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 675
            ++  + ++   D   S + P  +V G V  +   G FV  LG + G    S+       
Sbjct: 183 RAIAEAERKEARDRIMSTLKPGDIVEGKVARLTNFGAFVD-LGGIDGLVHVSEISYEHVN 241

Query: 676 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 735
             S    VG+ V+  +L V+ +  RI+LS+KQ+               +EEK        
Sbjct: 242 KPSDVLKVGEEVKVKVLSVDPDRNRISLSIKQTQPGPWSD--------IEEKAPK----- 288

Query: 736 HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE----- 790
                         GSV++GKV    DFG  V  E    V G +   Q++   ++     
Sbjct: 289 --------------GSVLDGKVKRLVDFGAFV--EVFPGVEGLVHISQISHKHIDKPSDV 332

Query: 791 --SGSVIQAAILDVAKAERLVDLSLKTVFID 819
             SG  ++  +LDV   E  + LS+K +  D
Sbjct: 333 LKSGEDVKVKVLDVQPEEHRLALSMKALEKD 363



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 148/352 (42%), Gaps = 31/352 (8%)

Query: 371 VKPGMVVKGKVIAVDSFGA-IVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVF-- 426
           V  G VV G+V+A+D     +V   G GV+ + P   +S      P   +KVG ++    
Sbjct: 22  VNVGYVVNGEVLAIDDDQQLVVGIEGAGVEGVIPRKEISAQREDNPTSNYKVGDKVKVVV 81

Query: 427 --RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT-HGWITKIEKHGCFVRFYNG 483
             R+   K     +   + L    L +     E  D+  T +  +T+  K G  V   +G
Sbjct: 82  VSRIGDDKEGGSYLLSIRRL--EALKVWDEIKEKADKGETINVTVTRAVKGGLVVN-ADG 138

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL 541
           V+GF P S +  D   +  + +  GQ ++ +I+  +P   R+ LS   + +  R    D 
Sbjct: 139 VRGFIPASMI-TDHFVDDLNQFK-GQELEVKIIEVVPEENRLILSHRAIAEAERKEARDR 196

Query: 542 V----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
           +    K G +V G V  +T     V +   G   G +    ++   EH      V+K G 
Sbjct: 197 IMSTLKPGDIVEGKVARLTNFGAFVDL---GGIDGLVHVSEIS--YEHVNKPSDVLKVGE 251

Query: 598 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFV 654
           E   ++L +D + + + LS K +     Q  P SD     P  SV+ G V  +++ G FV
Sbjct: 252 EVKVKVLSVDPDRNRISLSIKQT-----QPGPWSDIEEKAPKGSVLDGKVKRLVDFGAFV 306

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
                + G    S+         S     G+ V+  +LDV  E  R+ LS+K
Sbjct: 307 EVFPGVEGLVHISQISHKHIDKPSDVLKSGEDVKVKVLDVQPEEHRLALSMK 358


>gi|379747704|ref|YP_005338525.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
 gi|379755006|ref|YP_005343678.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-02]
 gi|379762496|ref|YP_005348893.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-64]
 gi|387876359|ref|YP_006306663.1| 30S ribosomal protein S1 [Mycobacterium sp. MOTT36Y]
 gi|443306116|ref|ZP_21035904.1| 30S ribosomal protein S1 [Mycobacterium sp. H4Y]
 gi|378800068|gb|AFC44204.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
 gi|378805222|gb|AFC49357.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-02]
 gi|378810438|gb|AFC54572.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-64]
 gi|386789817|gb|AFJ35936.1| 30S ribosomal protein S1 [Mycobacterium sp. MOTT36Y]
 gi|442767680|gb|ELR85674.1| 30S ribosomal protein S1 [Mycobacterium sp. H4Y]
          Length = 480

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407



 Score = 48.9 bits (115), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 148/381 (38%), Gaps = 53/381 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 807 RLVDLSLKTV---FIDRFREA 824
           R + LSLK     + D F  A
Sbjct: 356 RRISLSLKQANEDYTDEFDPA 376


>gi|300858350|ref|YP_003783333.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
 gi|375288519|ref|YP_005123060.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 3/99-5]
 gi|379715230|ref|YP_005303567.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 316]
 gi|383314109|ref|YP_005374964.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis P54B96]
 gi|384504528|ref|YP_005681198.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
 gi|384506621|ref|YP_005683290.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
 gi|384508709|ref|YP_005685377.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
 gi|384510800|ref|YP_005690378.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis PAT10]
 gi|385807399|ref|YP_005843796.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 267]
 gi|386740269|ref|YP_006213449.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 31]
 gi|387136462|ref|YP_005692442.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 42/02-A]
 gi|387138534|ref|YP_005694513.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis CIP
            52.97]
 gi|387140533|ref|YP_005696511.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1/06-A]
 gi|389850285|ref|YP_006352520.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 258]
 gi|300685804|gb|ADK28726.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
 gi|302206068|gb|ADL10410.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
 gi|302330619|gb|ADL20813.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
 gi|308276305|gb|ADO26204.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
 gi|341824739|gb|AEK92260.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis PAT10]
 gi|348606907|gb|AEP70180.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 42/02-A]
 gi|349735012|gb|AEQ06490.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis CIP
            52.97]
 gi|355392324|gb|AER68989.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1/06-A]
 gi|371575808|gb|AEX39411.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 3/99-5]
 gi|377653936|gb|AFB72285.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 316]
 gi|380869610|gb|AFF22084.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis P54B96]
 gi|383804792|gb|AFH51871.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 267]
 gi|384476963|gb|AFH90759.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 31]
 gi|388247591|gb|AFK16582.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 258]
          Length = 487

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAVDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QQIEAKIIELDKQRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL++ HV+  + +   G++  VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA 363



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 360



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDE 255

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWMEGF 405


>gi|392400474|ref|YP_006437074.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis Cp162]
 gi|390531552|gb|AFM07281.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis Cp162]
          Length = 487

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAVDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QQIEAKIIELDKQRN---NVVLSRRTWLEQTQSEVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL++ HV+  + +   G++  VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA 363



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 360



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRTWLEQTQSEVRSEFL 201

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDE 255

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWMEGF 405


>gi|392416422|ref|YP_006453027.1| ribosomal protein S1 [Mycobacterium chubuense NBB4]
 gi|390616198|gb|AFM17348.1| ribosomal protein S1 [Mycobacterium chubuense NBB4]
          Length = 480

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 187/414 (45%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S+    + +++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVALNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 813 LK 814
           LK
Sbjct: 362 LK 363



 Score = 47.4 bits (111), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 149/354 (42%), Gaps = 31/354 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    +D
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYSD 371


>gi|337290612|ref|YP_004629633.1| 30S ribosomal protein S1 [Corynebacterium ulcerans BR-AD22]
 gi|384515525|ref|YP_005710617.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 809]
 gi|397653858|ref|YP_006494541.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 0102]
 gi|334696726|gb|AEG81523.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 809]
 gi|334698918|gb|AEG83714.1| 30S ribosomal protein S1 [Corynebacterium ulcerans BR-AD22]
 gi|393402814|dbj|BAM27306.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 0102]
          Length = 487

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAVDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QQIEAKIIELDKQRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL++ HV+  + +   G++  VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA 363



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 360



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDE 255

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWMEGF 405


>gi|384045064|ref|YP_005493081.1| 30S ribosomal protein S1 [Bacillus megaterium WSH-002]
 gi|345442755|gb|AEN87772.1| 30S ribosomal protein S1-like protein [Bacillus megaterium WSH-002]
          Length = 384

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 6/186 (3%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +E L    +++G V+ +T  G F+ +   +D  V +S LS   VE P      G  V  R
Sbjct: 188  LESLKEGQVLEGTVQRLTDFGAFVDVG-GVDGLVHISQLSHTRVEKPSDVVAEGDTVKVR 246

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            VLSV+  + RV +++K  D+     S I+  + L  GD+V G +KR+ S+G F+ +    
Sbjct: 247  VLSVDKSTGRVSLSIK--DTLEGPWSNIS--TKLRQGDVVDGTVKRLVSFGAFVEV-LPG 301

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GL H+S++S  H+     +   GEKV VK+L V++++RR+SL ++    +   D    
Sbjct: 302  VEGLVHISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSIRDLEEEEQEDYGDY 361

Query: 1428 SSEEES 1433
              +EES
Sbjct: 362  ELQEES 367



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K G V++G V  +  FGA V   GGV  L  +  +S   + KP      G  +  RVL 
Sbjct: 191 LKEGQVLEGTVQRLTDFGAFVDV-GGVDGLVHISQLSHTRVEKPSDVVAEGDTVKVRVLS 249

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V   + R++++ K TL +   + +S+     D  +  G + ++   G FV    GV+G  
Sbjct: 250 VDKSTGRVSLSIKDTL-EGPWSNISTKLRQGD--VVDGTVKRLVSFGAFVEVLPGVEGLV 306

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             S++       P  +   G+ V  +++      RR++LS 
Sbjct: 307 HISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSI 347



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 42/67 (62%)

Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
             +++L VG+ V G I +VE   +++ + N+ L G+  +SEL+  H++    + + G +V+
Sbjct: 15   EVTSLEVGETVKGTITKVEEKQVYVDVPNSKLDGIIPISELASLHIEKAGDVIQEGAEVE 74

Query: 1397 VKILKVD 1403
             K++KV+
Sbjct: 75   AKVIKVE 81



 Score = 40.4 bits (93), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 15/249 (6%)

Query: 466 GWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
           G ITK+E+   +V   N  + G  P SEL      +   +   G  V+ +++        
Sbjct: 27  GTITKVEEKQVYVDVPNSKLDGIIPISELASLHIEKAGDVIQEGAEVEAKVIK--VEDDL 84

Query: 525 INLSFMMKPTRVSEDDL-VKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 581
           + LS        + D L  KL  G +   VV  +    +VV +  +G+   ++   H  D
Sbjct: 85  LVLSKRAVDAEKAWDGLEAKLSSGEVFEAVVKEIVKGGLVVDIGVRGFIPASLVETHFVD 144

Query: 582 HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVV 640
                      +K       ++ LD E + ++LS +  +     QQ  +    +    V+
Sbjct: 145 DFAEYQDQTLTVK-------VVELDKEKNRVILSHRAVVEEELVQQKENVLESLKEGQVL 197

Query: 641 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 700
            G V  + + G FV  +G + G    S+    +    S     G +V+  +L V+  TGR
Sbjct: 198 EGTVQRLTDFGAFVD-VGGVDGLVHISQLSHTRVEKPSDVVAEGDTVKVRVLSVDKSTGR 256

Query: 701 ITLSLKQSC 709
           ++LS+K + 
Sbjct: 257 VSLSIKDTL 265


>gi|237785408|ref|YP_002906113.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758320|gb|ACR17570.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
          Length = 488

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 186/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G V K+D++  LL I       + ++   +
Sbjct: 9    VAVNDIGSTEDFLAAIDSTIKYFNDGDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHEIDPNEVVE------VGDEIDALVLT--KEDKEGRLILSKKR-----AQYERAWGTIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKHRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDMDRERVSLSLKAT-----QEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAERHVEVPDQVVNVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 166/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S    + P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKHEIDPNEVVEVGDEIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQELEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDMDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+  +       +   VG+ V   ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAERHVEVPDQVVNVGEEVMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|32472024|ref|NP_865018.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
 gi|32397396|emb|CAD72702.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
          Length = 691

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 96/159 (60%), Gaps = 5/159 (3%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            V+G V+N+T+ G FI L   +D  + +S++S    +  P +    G+ +  R+LSV+   
Sbjct: 489  VKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQR 548

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ + LK  D+      +I +      G +V G++ ++ ++G+FI +E+  L GL H+S
Sbjct: 549  RRIALGLKQLDN-DPWDGDIPD--KYQPGQLVKGEVTKITNFGVFIGLED-GLEGLLHIS 604

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            EL+E  V++ E + + G+ ++VK+L+VD ++R+I L +K
Sbjct: 605  ELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLK 643



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 184/399 (46%), Gaps = 56/399 (14%)

Query: 1032 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1091
            E+ D + G+ V G + ++++EWAL+ +    K++  +    + P E Q       IG  V
Sbjct: 132  EQQDYNSGKIVDGRIVELNDEWALVDVG--FKSEGTVGLDEWGPEEDQP-----KIGDTV 184

Query: 1092 TGHVLSINKEKKLLRLVLRPF-QDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSG 1148
               +  +  E   L     P+    +S +  +  I  + M   + EG +V G + + + G
Sbjct: 185  KVLIEEMEDE---LGAADDPYGMISLSKRKAEKIIEWEAMMETVAEGQVVTGTVIRKIKG 241

Query: 1149 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1208
              GL+V IG ++     F     + +  P    D G F        G+ V+ +VL+I  T
Sbjct: 242  --GLLVDIGVNV-----FLPGSQVDIRRP---GDIGDF-------IGRVVQAEVLKIDDT 284

Query: 1209 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1268
             R   ++ +S RS ++     + + L             +++L    I +G VKN+   G
Sbjct: 285  RR---NIVISRRSLIERQREEDRAYL-------------MQELEVGQIRKGIVKNIADFG 328

Query: 1269 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
             F+ L   +D  + +++++   +  P +   I + +  +VL ++   +++ + LK  D  
Sbjct: 329  AFVDLG-GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRN 387

Query: 1329 TASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIE 1386
                 E    + ++H G++V      V SYG F+ +E   + GL H+SE+S    V++  
Sbjct: 388  PWENIETKYPVESVHPGEVV-----NVMSYGAFVKLE-PGIEGLVHISEMSWTKRVNHPS 441

Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
             +   G+K+ V IL VD E +++SLGMK +  KN  D +
Sbjct: 442  ELVNIGDKIDVMILGVDPEGQQLSLGMKQT-LKNPWDEV 479



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IG++V   VL ++   + + ++ ++   R   +     +  L VG I  G +K +  +G 
Sbjct: 270  IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 329

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
            F+ +   +  GL H+++++ + + +   +    ++++VK+L +D+EK++I+LG+K    +
Sbjct: 330  FVDLGGID--GLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKD-R 386

Query: 1420 NDADNLQMSSEEES 1433
            N  +N++     ES
Sbjct: 387  NPWENIETKYPVES 400



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 171/469 (36%), Gaps = 71/469 (15%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           V  G VV G VI     G +V    GV    P    S+ +I +PG       + + RV+ 
Sbjct: 225 VAEGQVVTGTVIRKIKGGLLVDI--GVNVFLP---GSQVDIRRPGDI----GDFIGRVVQ 275

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 482
            +  +I  T +  ++  +  I     E    L        I  G +  I   G FV    
Sbjct: 276 AEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDL-G 334

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 542
           G+ G    +++  +    P+ M  + Q ++ +++      ++I L    K     E+   
Sbjct: 335 GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIET 394

Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------G 596
           K        V+ V P  VV  +    + K     E L  H+   +  K V  P      G
Sbjct: 395 KY------PVESVHPGEVVNVMSYGAFVKLEPGIEGLV-HISEMSWTKRVNHPSELVNIG 447

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
            + D  +L +D E   L L  K +L N   ++            V G V N+   G F+ 
Sbjct: 448 DKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV---LERYPEGKDVKGKVRNLTNYGAFIE 504

Query: 656 FLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
               + G    S     ++ A  S+    GQ +   IL V+ +  RI L LKQ      D
Sbjct: 505 LEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDNDPWD 564

Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
                +                          +  G +++G+V +  +FGV +  E+   
Sbjct: 565 GDIPDK--------------------------YQPGQLVKGEVTKITNFGVFIGLEDG-- 596

Query: 775 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 816
           + G +   +LA   VE        G  I+  +L V   ER + LSLK V
Sbjct: 597 LEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 645



 Score = 47.8 bits (112), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 89/412 (21%), Positives = 167/412 (40%), Gaps = 70/412 (16%)

Query: 64  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
           +G++V   VL++DD ++ I   +  L  R     +   ++ ++ G +    VK+I D G 
Sbjct: 270 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 329

Query: 124 ILHFGLPSFTGFL------------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            +  G     G L            P   L+ +  I+VK        V  IDR ++ + L
Sbjct: 330 FVDLG--GIDGLLHITDMAWERIGHPTEMLSIDQEIEVK--------VLHIDREKQKIAL 379

Query: 172 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 228
                D +      TK      ++ + PG +V+     ++  G  +       G V I  
Sbjct: 380 GLKQKDRNPWENIETK----YPVESVHPGEVVN-----VMSYGAFVKLEPGIEGLVHISE 430

Query: 229 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSH--- 279
           +  T    +     N   K++  IL VDP  + + L +     NP+  +  R P      
Sbjct: 431 MSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEVLERYPEGKDVK 490

Query: 280 VKVGDIYDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEG 335
            KV ++ +    + ++ G+  LL +     +  ++ P+ V            LEK    G
Sbjct: 491 GKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEV------------LEK----G 534

Query: 336 SCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 392
             +  RIL     R    L    L    ++G +      +PG +VKG+V  + +FG  + 
Sbjct: 535 QEIECRILSVDEQRRRIALGLKQLDNDPWDGDI--PDKYQPGQLVKGEVTKITNFGVFIG 592

Query: 393 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKK 442
              G++ L  +  ++E ++  P +  KVG  +  +VL V +  ++I ++ K+
Sbjct: 593 LEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKR 644


>gi|166154319|ref|YP_001654437.1| 30S ribosomal protein S1 [Chlamydia trachomatis 434/Bu]
 gi|166155194|ref|YP_001653449.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|255348460|ref|ZP_05380467.1| 30S ribosomal protein S1 [Chlamydia trachomatis 70]
 gi|255503002|ref|ZP_05381392.1| 30S ribosomal protein S1 [Chlamydia trachomatis 70s]
 gi|301335570|ref|ZP_07223814.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2tet1]
 gi|339625750|ref|YP_004717229.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2c]
 gi|165930307|emb|CAP03793.1| SSU ribosomal protein S1P [Chlamydia trachomatis 434/Bu]
 gi|165931182|emb|CAP06747.1| SSU ribosomal protein S1P [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|339460979|gb|AEJ77482.1| ribosomal protein S1 [Chlamydia trachomatis L2c]
 gi|440525903|emb|CCP51387.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/8200/07]
 gi|440535727|emb|CCP61240.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/795]
 gi|440536617|emb|CCP62131.1| 30S ribosomal protein S1 [Chlamydia trachomatis L1/440/LN]
 gi|440537509|emb|CCP63023.1| 30S ribosomal protein S1 [Chlamydia trachomatis L1/1322/p2]
 gi|440538399|emb|CCP63913.1| 30S ribosomal protein S1 [Chlamydia trachomatis L1/115]
 gi|440539288|emb|CCP64802.1| 30S ribosomal protein S1 [Chlamydia trachomatis L1/224]
 gi|440540178|emb|CCP65692.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2/25667R]
 gi|440541068|emb|CCP66582.1| 30S ribosomal protein S1 [Chlamydia trachomatis L3/404/LN]
 gi|440541956|emb|CCP67470.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/UCH-2]
 gi|440542846|emb|CCP68360.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Canada2]
 gi|440543738|emb|CCP69252.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/LST]
 gi|440544628|emb|CCP70142.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams1]
 gi|440545518|emb|CCP71032.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/CV204]
 gi|440913780|emb|CCP90197.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams2]
 gi|440914670|emb|CCP91087.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams3]
 gi|440915562|emb|CCP91979.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Canada1]
 gi|440916455|emb|CCP92872.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams4]
 gi|440917345|emb|CCP93762.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams5]
          Length = 569

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K        + E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIE----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1434
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLAHGGDAGHDAEEESSD 567



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 394
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 395 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 451
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 512 KCRIMSSIPASRRINLSF 529
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 425
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 539
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 654 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471


>gi|374339665|ref|YP_005096401.1| 30S ribosomal protein S1 [Marinitoga piezophila KA3]
 gi|372101199|gb|AEX85103.1| ribosomal protein S1 [Marinitoga piezophila KA3]
          Length = 519

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 170/387 (43%), Gaps = 31/387 (8%)

Query: 332 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 391
           YK+G  ++V++L     EG A G  KA+  + ++    ++  G VVKGK+      G IV
Sbjct: 63  YKKGEKIKVKLLKINDAEGQAFGSEKAAKKDEII---DEIVEGKVVKGKIKERVEKGYIV 119

Query: 392 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 451
           +    V+A  P        ++ P + F    E+ F V+  + +R     +  +V S+  +
Sbjct: 120 ELENVVRAFLP----GSLAMLNPNEPFP-REEMDFLVIKREERR----RRLNIVVSRKGL 170

Query: 452 LSSYAEA---TDRLIT--HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 506
           +  Y E    T  L T   G +T I++ G F+     +    P+SE+  D   + + MY 
Sbjct: 171 VDKYIEEFFNTHNLNTLVEGVVTGIKEFGLFISLNPYITALVPKSEISWDKKVDINEMYK 230

Query: 507 VGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY 563
           +G  VK  I+     +R+I++S       P    E D   + S+V G V  + P     +
Sbjct: 231 IGDKVKGIIIKLDKENRKISVSVKRLKDDPWETVEKDY-PVDSIVEGEVIEIFP-----F 284

Query: 564 VIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLI 621
             A    +G     H ++        ++ V+  G +   ++L +D +   + LS K  L 
Sbjct: 285 GFAVKLGEGIEGLVHESEIFWSGKRKIEDVVSVGDKVKVKVLSIDKDKKKITLSYKQVLG 344

Query: 622 NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 681
           +  + +      +H   +V G V  I+  G  ++    LTGF+  S+       ++   +
Sbjct: 345 DPWKDID---EKLHEGDIVDGVVEKILPNGLIIKLDNELTGFSHVSELSWNFVDNVEDLF 401

Query: 682 YVGQSVRSNILDVNSETGRITLSLKQS 708
             G  V+  +L V+ E  +I LS+KQ+
Sbjct: 402 KEGDKVKVKVLHVDKENRKIKLSVKQA 428



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 125/256 (48%), Gaps = 34/256 (13%)

Query: 1239 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1298
            D P + +EK  D   + IV+G V  +   G  + L   ++  V  S +        E   
Sbjct: 258  DDPWETVEK--DYPVDSIVEGEVIEIFPFGFAVKLGEGIEGLVHESEIFWSGKRKIEDVV 315

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
             +G  V  +VLS++   K++  TL           +I+    LH GDIV G ++++   G
Sbjct: 316  SVGDKVKVKVLSIDKDKKKI--TLSYKQVLGDPWKDID--EKLHEGDIVDGVVEKILPNG 371

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY- 1417
            L I ++N  L G  HVSELS + VDN+E +++ G+KVKVK+L VDKE R+I L +K +  
Sbjct: 372  LIIKLDN-ELTGFSHVSELSWNFVDNVEDLFKEGDKVKVKVLHVDKENRKIKLSVKQAKE 430

Query: 1418 --FKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIE 1475
              +K  ++ L+ + +E S + ++ VG                        G  +++ + E
Sbjct: 431  NPWKKVSNELK-NGDEISGKVVKYVGK-----------------------GAVIIVDEYE 466

Query: 1476 SRASVPPLEVNLDDEQ 1491
              A +P  ++NL++ Q
Sbjct: 467  VEAFIPKSKINLEENQ 482



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 121/276 (43%), Gaps = 36/276 (13%)

Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD-----EGQFDPLSGYDEGQFV 1198
            K+L  V    ++ G  L G +       + VS P   +D     +     +  Y +G+ +
Sbjct: 10   KMLDEVSEFHIKKGETLTGEIISISSDGVYVSAPGKAFDVYVGKDYLLKNIDEYKKGEKI 69

Query: 1199 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1258
            K K+L+I+      F  E + +                         E I+++    +V+
Sbjct: 70   KVKLLKINDAEGQAFGSEKAAKKD-----------------------EIIDEIVEGKVVK 106

Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1318
            G +K    KG  + L   + A  L  +L+   + +P + FP  ++    V+  E   +R+
Sbjct: 107  GKIKERVEKGYIVELENVVRA-FLPGSLA---MLNPNEPFPREEM-DFLVIKREERRRRL 161

Query: 1319 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1378
             + +           E  N  NL+   +V G +  ++ +GLFI++ N  +  L   SE+S
Sbjct: 162  NIVVSRKGLVDKYIEEFFNTHNLNT--LVEGVVTGIKEFGLFISL-NPYITALVPKSEIS 218

Query: 1379 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             D   +I  +Y+ G+KVK  I+K+DKE R+IS+ +K
Sbjct: 219  WDKKVDINEMYKIGDKVKGIIIKLDKENRKISVSVK 254



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 113/283 (39%), Gaps = 51/283 (18%)

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
           N++V G V  I E G F+     +T   P+S+    ++ D+++ Y +G  V+  I+ ++ 
Sbjct: 185 NTLVEGVVTGIKEFGLFISLNPYITALVPKSEISWDKKVDINEMYKIGDKVKGIIIKLDK 244

Query: 697 ETGRITLS---LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII--GS 751
           E  +I++S   LK     + +  +  +  +  E I +               GF +  G 
Sbjct: 245 ENRKISVSVKRLKDDPWETVEKDYPVDSIVEGEVIEIFPF------------GFAVKLGE 292

Query: 752 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 811
            IEG VHES  F                +  +     V  G  ++  +L + K ++ + L
Sbjct: 293 GIEGLVHESEIFW---------------SGKRKIEDVVSVGDKVKVKVLSIDKDKKKITL 337

Query: 812 SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 871
           S K V  D +++ +                 L     V+ +VE +  N L++ L   N  
Sbjct: 338 SYKQVLGDPWKDIDEK---------------LHEGDIVDGVVEKILPNGLIIKLD--NEL 380

Query: 872 IGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 912
            G++ VS+  +N     +  F  G  V   V+ +   +   +L
Sbjct: 381 TGFSHVSELSWNFVDNVEDLFKEGDKVKVKVLHVDKENRKIKL 423



 Score = 45.1 bits (105), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 24/157 (15%)

Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
            +G  V   VLSI+K+KK + L    ++  + D   DI        +HEGDIV G + KIL
Sbjct: 317  VGDKVKVKVLSIDKDKKKITL---SYKQVLGDPWKDIDEK-----LHEGDIVDGVVEKIL 368

Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
                GL++++   L G  H +EL    V +          + L  + EG  VK KVL + 
Sbjct: 369  P--NGLIIKLDNELTGFSHVSELSWNFVDN---------VEDL--FKEGDKVKVKVLHVD 415

Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
            +  R    ++LS++ + +      S++L    +  GK
Sbjct: 416  KENR---KIKLSVKQAKENPWKKVSNELKNGDEISGK 449


>gi|296164500|ref|ZP_06847071.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
            BAA-614]
 gi|295900100|gb|EFG79535.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
            BAA-614]
          Length = 480

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 807 RLVDLSLK 814
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|397670587|ref|YP_006512122.1| 30S ribosomal protein S1 [Propionibacterium propionicum F0230a]
 gi|395141590|gb|AFN45697.1| 30S ribosomal protein S1 [Propionibacterium propionicum F0230a]
          Length = 482

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 181/414 (43%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            + + S + V + GS   F    D +I     G  V+G V KVD +  LL I       + 
Sbjct: 5    TTEASTVAVDDFGSPEAFMAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P ++        +G  +    L   KE K  RL+L   +        + 
Sbjct: 65   SKELSIKHDVDPFDV------VRVGDEI--EALVQQKEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    E  +V G + +++ G  GL+V IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEKIKEEDGVVSGSVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVGME- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S               
Sbjct: 169  --------------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVEVGTP 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLEVDMDRERVSLSLKAT-----QEDPWQTFARLHQIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +    + GL HVSEL+E HV+  E +   G++V VK++ +D E+RR+SL +K +
Sbjct: 313  V-GDGIEGLVHVSELAERHVEIPEQVVSVGDEVMVKVIDIDLERRRVSLSLKQA 365



 Score = 45.1 bits (105), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 143/347 (41%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + P   +S    V P    +VG E+   V   + 
Sbjct: 36  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFDVVRVGDEIEALVQQKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E     +  G + ++ K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEKIKEEDG--VVSGSVIEVVKGGLIVDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG  ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 152 LVEMRRVRDLQP----YVGMELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GVV  +      V +   G   G +    L+  H++H   +  V  P     ++
Sbjct: 208 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPNEVVEVGTPVTV--EV 262

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLT 661
           L +D +   + LS K +  +  Q      + +H    +V G V  ++  G FVR    + 
Sbjct: 263 LEVDMDRERVSLSLKATQEDPWQTF----ARLHQIGQIVPGKVTKLVPFGAFVRVGDGIE 318

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   VG  V   ++D++ E  R++LSLKQ+
Sbjct: 319 GLVHVSELAERHVEIPEQVVSVGDEVMVKVIDIDLERRRVSLSLKQA 365


>gi|433647758|ref|YP_007292760.1| ribosomal protein S1 [Mycobacterium smegmatis JS623]
 gi|433297535|gb|AGB23355.1| ribosomal protein S1 [Mycobacterium smegmatis JS623]
          Length = 481

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S+    + +++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAINDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 151/380 (39%), Gaps = 46/380 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRR 357

Query: 809 VDLSLKTVFIDRFREANSNR 828
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407


>gi|383824746|ref|ZP_09979918.1| 30S ribosomal protein S1 [Mycobacterium xenopi RIVM700367]
 gi|383336812|gb|EID15207.1| 30S ribosomal protein S1 [Mycobacterium xenopi RIVM700367]
          Length = 486

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVSSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VKVGDKVEALVLT--KEDKDGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE H++  + +   G++V VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHIEVADQVVGVGDEVMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 144/366 (39%), Gaps = 46/366 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDKVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKDGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++A   V  G  +   ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHIEVADQVVGVGDEVMVKVIDIDLERRR 357

Query: 809 VDLSLK 814
           + LSLK
Sbjct: 358 ISLSLK 363



 Score = 47.8 bits (112), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 153/354 (43%), Gaps = 31/354 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG ++   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDKVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELSERHIEVADQVVGVGDEVMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|385676805|ref|ZP_10050733.1| 30S ribosomal protein S1 [Amycolatopsis sp. ATCC 39116]
          Length = 498

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 186/410 (45%), Gaps = 64/410 (15%)

Query: 1018 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1067
            + + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++  
Sbjct: 14   AQVAVNDIGSEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSREL 73

Query: 1068 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
             +    +P E+        +G  V   VL   KE K  RL+L   +        + +   
Sbjct: 74   SIKHDVDPGEV------VSVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGT 120

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
            ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G +     
Sbjct: 121  IEELKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----- 173

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
                      ++ K++E+ +      +V LS R+ L+   S   S+              
Sbjct: 174  ----------LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF------------- 207

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +  L+   + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   
Sbjct: 208  LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVE 266

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1366
            VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E  
Sbjct: 267  VLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE- 320

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             + GL H+SEL+E HV+  E + + G +V VK++ +D E+RRISL +K +
Sbjct: 321  GIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQA 370



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 153/358 (42%), Gaps = 32/358 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVSVGDEVEALVLQKED 100

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 717
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    +TD  F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQANEGFTTDTEF 380



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 146/366 (39%), Gaps = 46/366 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++  
Sbjct: 39  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVSVGDEVEALVLQK 98

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 99  EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP 154

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 155 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 210

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 211 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 269

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 270 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 302

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  EE  +    I+     H ++    V+ G+ +   ++D+    R 
Sbjct: 303 PGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRR 362

Query: 809 VDLSLK 814
           + LSLK
Sbjct: 363 ISLSLK 368


>gi|357018753|ref|ZP_09081016.1| 30S ribosomal protein S1 [Mycobacterium thermoresistibile ATCC 19527]
 gi|356481471|gb|EHI14576.1| 30S ribosomal protein S1 [Mycobacterium thermoresistibile ATCC 19527]
          Length = 478

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VSVGDQVEALVLT--KEDKDGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGRE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE H++  + + + G+ V VK++ +D ++RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHIEVPDQVVQVGDDVMVKVIDIDLDRRRISLSLKQA 365



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 143/362 (39%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDQVEALVLTKEDKD 97

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  EE  +    I+     H ++    V+ G  +   ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHIEVPDQVVQVGDDVMVKVIDIDLDRRRISLS 361

Query: 813 LK 814
           LK
Sbjct: 362 LK 363



 Score = 45.8 bits (107), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG ++   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDQVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGTIEALKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   VG  V   ++D++ +  RI+LSLKQ+
Sbjct: 318 EGLVHISELSERHIEVPDQVVQVGDDVMVKVIDIDLDRRRISLSLKQA 365


>gi|303245616|ref|ZP_07331899.1| ribosomal protein S1 [Desulfovibrio fructosovorans JJ]
 gi|302492879|gb|EFL52744.1| ribosomal protein S1 [Desulfovibrio fructosovorans JJ]
          Length = 576

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 152/348 (43%), Gaps = 34/348 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
           G VV G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQVVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQ 266

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           + +++++  K+ +      I   Y E T RL   G +T +  +G FV    GV+G    S
Sbjct: 267 EKQKVSLGMKQLVSDPWENIAGKYPEGT-RLA--GKVTNLVDYGAFVELEAGVEGLVHIS 323

Query: 492 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 546
           E+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V      G+
Sbjct: 324 EMSWTRKLRHPSQMVHVGDEVEVVVLSVDPEKKRISLG--MKQVRPNPWDIVAEKYPEGT 381

Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 600
           ++ G V  +T   + +     G   G     H++D     +  K V  PG  F       
Sbjct: 382 ILEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKTGDIVM 432

Query: 601 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 658
            ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGTMVKGTVTNITDFGLFVEVEE 488

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
            + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 489 GIEGLVHVSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 63/385 (16%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1094
            GQ VTG V  +  E+ +      L   + I D +++    P EL       H+G  +   
Sbjct: 208  GQVVTGRVKNI-TEYGVFVDLGGLDGLMHITDMSWKRIKHPKEL------VHLGDELELK 260

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VLS ++EK+ + L ++     +SD       +N+     EG  + G+++ ++    G  V
Sbjct: 261  VLSFDQEKQKVSLGMKQL---VSDPW-----ENIAGKYPEGTRLAGKVTNLVDY--GAFV 310

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
            ++   + G VH +E+           +      P      G  V+  VL +    +    
Sbjct: 311  ELEAGVEGLVHISEMS----------WTRKLRHPSQMVHVGDEVEVVVLSVDPEKK---- 356

Query: 1215 VELSLRSSLDGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
                 R SL GM     N  D+              E      I++G VKN+T  G FI 
Sbjct: 357  -----RISL-GMKQVRPNPWDIVA------------EKYPEGTILEGSVKNITEFGIFIG 398

Query: 1273 LSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
            +   +D  + +S++S    V  P + F  G +V  +VL+V+  +++  + +K       S
Sbjct: 399  IEDGIDGLIHVSDISWTKKVRHPGEMFKTGDIVMAKVLTVDKENEKFTLGIKQ-----LS 453

Query: 1332 QSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1390
            +     + + + VG +V G +  +  +GLF+ +E   + GL HVSE+S   V     +Y+
Sbjct: 454  EDPWTRVPDTYPVGTMVKGTVTNITDFGLFVEVEE-GIEGLVHVSEISRKKVKTPAELYK 512

Query: 1391 AGEKVKVKILKVDKEKRRISLGMKS 1415
             G++++ K++ V  ++RR+ L +KS
Sbjct: 513  EGDEIEAKVIHVSADERRLGLSIKS 537



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L    +V G VKN+T  G F+ L   LD  + ++++S   ++ P++   +G  +  +VLS
Sbjct: 205  LEEGQVVTGRVKNITEYGVFVDLG-GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
             +   ++V + +K    +  S    N       G  + G++  +  YG F+ +E   + G
Sbjct: 264  FDQEKQKVSLGMK----QLVSDPWENIAGKYPEGTRLAGKVTNLVDYGAFVELE-AGVEG 318

Query: 1371 LCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            L H+SE+S    + +   +   G++V+V +L VD EK+RISLGMK
Sbjct: 319  LVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPEKKRISLGMK 363



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 70/123 (56%), Gaps = 6/123 (4%)

Query: 1294 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQI 1351
            P+ +  +G+    RVL +      V V+ +    + R + + ++  L  L  G +V G++
Sbjct: 158  PDMDALVGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL--LKTLEEGQVVTGRV 215

Query: 1352 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
            K +  YG+F+ +    L GL H++++S   + + + +   G+++++K+L  D+EK+++SL
Sbjct: 216  KNITEYGVFVDL--GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQEKQKVSL 273

Query: 1412 GMK 1414
            GMK
Sbjct: 274  GMK 276



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 107/509 (21%), Positives = 191/509 (37%), Gaps = 97/509 (19%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--- 516
           D +IT   + +I+  G +     GV+ F P S + L P  +  ++  VGQ  + R++   
Sbjct: 121 DDVITGRIVRRIK--GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKIN 176

Query: 517 ---SSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV-------- 562
              S++  SRR+ L       R    DL+K    G +V+G V  +T   V V        
Sbjct: 177 RRRSNVIVSRRVLLEERRDSMR---KDLLKTLEEGQVVTGRVKNITEYGVFVDLGGLDGL 233

Query: 563 -YVIAKGYSKGTIPTE--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 619
            ++    + +   P E  HL D LE                ++L  D E   + L  K  
Sbjct: 234 MHITDMSWKRIKHPKELVHLGDELEL---------------KVLSFDQEKQKVSLGMKQL 278

Query: 620 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLS 678
           + +  + +   A      + + G V N+++ G FV     + G    S+    ++    S
Sbjct: 279 VSDPWENI---AGKYPEGTRLAGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPS 335

Query: 679 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 738
           +  +VG  V   +L V+ E  RI+L +KQ   +  D        ++ EK           
Sbjct: 336 QMVHVGDEVEVVVLSVDPEKKRISLGMKQVRPNPWD--------IVAEK----------- 376

Query: 739 SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESG 792
                   +  G+++EG V    +FG+ +  E+      H     +    +  G   ++G
Sbjct: 377 --------YPEGTILEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKTG 428

Query: 793 SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 852
            ++ A +L V K      L +K +  D +                       V   V   
Sbjct: 429 DIVMAKVLTVDKENEKFTLGIKQLSEDPWTRVPDTYP---------------VGTMVKGT 473

Query: 853 VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 912
           V  + +  L + + E    + + S       K P + +  G  + A V+ +  S+   RL
Sbjct: 474 VTNITDFGLFVEVEEGIEGLVHVSEISRKKVKTPAELYKEGDEIEAKVIHV--SADERRL 531

Query: 913 LLLLKAISETETS-SSKRAKKKSSYDVGS 940
            L +K+I + E    +K  +     D GS
Sbjct: 532 GLSIKSIKDEEDKRKAKEFRTAGPSDTGS 560



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 168/384 (43%), Gaps = 35/384 (9%)

Query: 64  VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG V+T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQVVTGRVKNITEYG 222

Query: 123 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV 178
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQEKQKVSLG-----M 275

Query: 179 SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 238
            + V+   + I+      G  ++ +V ++++ G  +       G V I  +  T    + 
Sbjct: 276 KQLVSDPWENIA-GKYPEGTRLAGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHP 334

Query: 239 KNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIYDQSKVV 292
               +   +V   +L VDP  + + L +     NP+ ++  + P   +  G + + ++  
Sbjct: 335 SQMVHVGDEVEVVVLSVDPEKKRISLGMKQVRPNPWDIVAEKYPEGTILEGSVKNITE-- 392

Query: 293 RVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF-RHLEG 350
                 G+ + I          + +SD++  ++VR   + +K G  V  ++L   +  E 
Sbjct: 393 -----FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKTGDIVMAKVLTVDKENEK 444

Query: 351 LATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
              GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +  +S  
Sbjct: 445 FTLGIKQLS--EDPWTRVPDTYPVGTMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRK 502

Query: 410 EIVKPGKKFKVGAELVFRVLGVKS 433
           ++  P + +K G E+  +V+ V +
Sbjct: 503 KVKTPAELYKEGDEIEAKVIHVSA 526


>gi|440716171|ref|ZP_20896684.1| 30S ribosomal protein S1 [Rhodopirellula baltica SWK14]
 gi|436438795|gb|ELP32313.1| 30S ribosomal protein S1 [Rhodopirellula baltica SWK14]
          Length = 613

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 96/159 (60%), Gaps = 5/159 (3%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            V+G V+N+T+ G FI L   +D  + +S++S    +  P +    G+ +  R+LSV+   
Sbjct: 411  VKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQR 470

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ + LK  D+      +I +      G +V G++ ++ ++G+FI +E+  L GL H+S
Sbjct: 471  RRIALGLKQLDN-DPWDGDIPD--KYQPGQLVKGEVTKITNFGVFIGLED-GLEGLLHIS 526

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            EL+E  V++ E + + G+ ++VK+L+VD ++R+I L +K
Sbjct: 527  ELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLK 565



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 184/399 (46%), Gaps = 56/399 (14%)

Query: 1032 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1091
            E+ D + G+ V G + ++++EWAL+ +    K++  +    + P E Q       IG  V
Sbjct: 54   EQQDYNSGKIVDGRIVELNDEWALVDVG--FKSEGTVGLDEWGPEEDQP-----KIGDTV 106

Query: 1092 TGHVLSINKEKKLLRLVLRPF-QDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSG 1148
               +  +  E   L     P+    +S +  +  I  + M   + EG +V G + + + G
Sbjct: 107  KVLIEEMEDE---LGAADDPYGMISLSKRKAEKIIEWEAMMETVAEGQVVTGTVIRKIKG 163

Query: 1149 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1208
              GL+V IG ++     F     + +  P    D G F        G+ V+ +VL+I  T
Sbjct: 164  --GLLVDIGVNV-----FLPGSQVDIRRP---GDIGDF-------IGRVVQAEVLKIDDT 206

Query: 1209 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1268
             R   ++ +S RS ++     + + L             +++L    I +G VKN+   G
Sbjct: 207  RR---NIVISRRSLIERQREEDRAYL-------------MQELEVGQIRKGIVKNIADFG 250

Query: 1269 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
             F+ L   +D  + +++++   +  P +   I + +  +VL ++   +++ + LK  D  
Sbjct: 251  AFVDLG-GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRN 309

Query: 1329 TASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIE 1386
                 E    + ++H G++V      V SYG F+ +E   + GL H+SE+S    V++  
Sbjct: 310  PWENIETKYPVESVHPGEVV-----NVMSYGAFVKLE-PGIEGLVHISEMSWTKRVNHPS 363

Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
             +   G+K+ V IL VD E +++SLGMK +  KN  D +
Sbjct: 364  ELVNIGDKIDVMILGVDPEGQQLSLGMKQT-LKNPWDEV 401



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 171/469 (36%), Gaps = 71/469 (15%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           V  G VV G VI     G +V    GV    P    S+ +I +PG       + + RV+ 
Sbjct: 147 VAEGQVVTGTVIRKIKGGLLVDI--GVNVFLP---GSQVDIRRPGDI----GDFIGRVVQ 197

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 482
            +  +I  T +  ++  +  I     E    L        I  G +  I   G FV    
Sbjct: 198 AEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDL-G 256

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 542
           G+ G    +++  +    P+ M  + Q ++ +++      ++I L    K     E+   
Sbjct: 257 GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIET 316

Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------G 596
           K        V+ V P  VV  +    + K     E L  H+   +  K V  P      G
Sbjct: 317 KY------PVESVHPGEVVNVMSYGAFVKLEPGIEGLV-HISEMSWTKRVNHPSELVNIG 369

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
            + D  +L +D E   L L  K +L N   ++            V G V N+   G F+ 
Sbjct: 370 DKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV---LERYPEGKDVKGKVRNLTNYGAFIE 426

Query: 656 FLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
               + G    S     ++ A  S+    GQ +   IL V+ +  RI L LKQ      D
Sbjct: 427 LEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDNDPWD 486

Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
                +                          +  G +++G+V +  +FGV +  E+   
Sbjct: 487 GDIPDK--------------------------YQPGQLVKGEVTKITNFGVFIGLEDG-- 518

Query: 775 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 816
           + G +   +LA   VE        G  I+  +L V   ER + LSLK V
Sbjct: 519 LEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 567



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IG++V   VL ++   + + ++ ++   R   +     +  L VG I  G +K +  +G 
Sbjct: 192  IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 251

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
            F+ +   +  GL H+++++ + + +   +    ++++VK+L +D+EK++I+LG+K    +
Sbjct: 252  FVDLGGID--GLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKD-R 308

Query: 1420 NDADNLQMSSEEES 1433
            N  +N++     ES
Sbjct: 309  NPWENIETKYPVES 322



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 167/413 (40%), Gaps = 70/413 (16%)

Query: 64  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
           +G++V   VL++DD ++ I   +  L  R     +   ++ ++ G +    VK+I D G 
Sbjct: 192 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 251

Query: 124 ILHFGLPSFTGFL------------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            +  G     G L            P   L+ +  I+VK        V  IDR ++ + L
Sbjct: 252 FVDLG--GIDGLLHITDMAWERIGHPTEMLSIDQEIEVK--------VLHIDREKQKIAL 301

Query: 172 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 228
                D +      TK      ++ + PG +V+     ++  G  +       G V I  
Sbjct: 302 GLKQKDRNPWENIETK----YPVESVHPGEVVN-----VMSYGAFVKLEPGIEGLVHISE 352

Query: 229 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSH--- 279
           +  T    +     N   K++  IL VDP  + + L +     NP+  +  R P      
Sbjct: 353 MSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEVLERYPEGKDVK 412

Query: 280 VKVGDIYDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEG 335
            KV ++ +    + ++ G+  LL +     +  ++ P+ V            LEK    G
Sbjct: 413 GKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEV------------LEK----G 456

Query: 336 SCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 392
             +  RIL     R    L    L    ++G +      +PG +VKG+V  + +FG  + 
Sbjct: 457 QEIECRILSVDEQRRRIALGLKQLDNDPWDGDI--PDKYQPGQLVKGEVTKITNFGVFIG 514

Query: 393 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 443
              G++ L  +  ++E ++  P +  KVG  +  +VL V +  ++I ++ K+ 
Sbjct: 515 LEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 567


>gi|375290806|ref|YP_005125346.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 241]
 gi|376242739|ref|YP_005133591.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae CDCE 8392]
 gi|376245637|ref|YP_005135876.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC01]
 gi|376248430|ref|YP_005140374.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC04]
 gi|376251220|ref|YP_005138101.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC03]
 gi|376254226|ref|YP_005142685.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae PW8]
 gi|376257038|ref|YP_005144929.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae VA01]
 gi|376287654|ref|YP_005160220.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae BH8]
 gi|376290348|ref|YP_005162595.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae C7 (beta)]
 gi|371580477|gb|AEX44144.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 241]
 gi|371584988|gb|AEX48653.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae BH8]
 gi|372103744|gb|AEX67341.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae C7 (beta)]
 gi|372105981|gb|AEX72043.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae CDCE 8392]
 gi|372108267|gb|AEX74328.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC01]
 gi|372112724|gb|AEX78783.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC03]
 gi|372114998|gb|AEX81056.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC04]
 gi|372117310|gb|AEX69780.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae PW8]
 gi|372119555|gb|AEX83289.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae VA01]
          Length = 513

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 61   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 114

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 115  VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 165

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +   DP  G               Q ++ K++E+ +      +
Sbjct: 166  DIGLRGFLPASLVEMRRVRDLDPYIG---------------QQIEAKIIELDKQRN---N 207

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 208  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 254

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 255  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 308

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 309  WRVFARTHAVGQIVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGD 367

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +  VK++ +D E+RRISL +K +
Sbjct: 368  EAMVKVIDIDLERRRISLSLKQA 390



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 227 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 284

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 285 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGRVTKLVPFGAFVRVEEG 341

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 342 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 387



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 61  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 120

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 121 KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 176

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 177 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 228

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 229 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 282

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 283 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGRVTKLVPFGAFVR 337

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 338 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 392

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 393 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 432


>gi|359420845|ref|ZP_09212776.1| 30S ribosomal protein S1 [Gordonia araii NBRC 100433]
 gi|358243118|dbj|GAB10845.1| 30S ribosomal protein S1 [Gordonia araii NBRC 100433]
          Length = 487

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVTVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDALVKVIDIDLERRRISLSLKQA 365



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 155/391 (39%), Gaps = 50/391 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         ++   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPNEVVTVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAA------ 798
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE    + A       
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDALV 346

Query: 799 -ILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 147/354 (41%), Gaps = 31/354 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H      V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPN---EVVTVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDALVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|357590914|ref|ZP_09129580.1| 30S ribosomal protein S1 [Corynebacterium nuruki S6-4]
          Length = 487

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 184/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEDFLAAVDKTIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDEIDALVLT--KEDKDGRLILSKKR-----AQYERAWGTIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 116  DLKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKQ---RNNVVLSRRAWLEETQSAVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVSVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HVD  + I   G+ + VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAERHVDVPDQIVSVGQDLMVKVIDIDLERRRISLSLKQA 363



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVSVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  +  VGQ +  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAERHVDVPDQIVSVGQDLMVKVIDIDLERRRISLSL 360



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 153/355 (43%), Gaps = 33/355 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KDGRLILSKKRAQYERAWGTIEDLKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQELEAKIIELDKQRNNVVLSRRAWLEETQSAVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H + + SV   G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVSV---GDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
           + G    S+  +       +   VGQ +   ++D++ E  RI+LSLKQ+    +D
Sbjct: 315 IEGLVHISELAERHVDVPDQIVSVGQDLMVKVIDIDLERRRISLSLKQADEDYSD 369


>gi|239917616|ref|YP_002957174.1| 30S ribosomal protein S1 [Micrococcus luteus NCTC 2665]
 gi|239838823|gb|ACS30620.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665]
          Length = 485

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 187/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IGS + L    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 10   VAINDIGSAEDLLAAIDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 69

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+        +G  V   VL+  KE K  RL+L   +        DI     +
Sbjct: 70   KHDVDPDEV------VAVGDTVEALVLT--KEDKEGRLILSKKRAQYERAWGDI-----E 116

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 117  KIKEEDGVVEGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG--------- 165

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+           L K+E
Sbjct: 166  ------QKLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSNF----------LHKLE 206

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
                  +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 207  ---KGQVRNGTVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 262

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
             V+   +RV ++LK      A+Q +   L +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 263  EVDMDRERVSLSLK------ATQEDPWQLFARTHALGQVVPGKVTKLVPFGAFVRVED-G 315

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+  H+D  E +    +++ VK++ +D E+RRISL +K +
Sbjct: 316  IEGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSLKQA 364


>gi|160892582|ref|ZP_02073372.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50]
 gi|156865623|gb|EDO59054.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
            L2-50]
          Length = 650

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 8/170 (4%)

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E  E +   M V+G VKNVT  G FI L    D  + +S +S G VESP+K F +G  V 
Sbjct: 471  ELFEKIEVGMTVEGTVKNVTDFGAFIDLG-GADGLLHISEMSWGRVESPKKMFKVGDTVK 529

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
              +  +     ++ ++LK  ++     +E        VG +V G+I R+  +G F+ +E 
Sbjct: 530  AFIKDIN--GDKIALSLKFDETNPWLNAE----EKYAVGTVVTGKIARMTDFGAFVELE- 582

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
              +  L HVS++S DHV   E +Y+ G++++ K++    E+++ISL +K+
Sbjct: 583  PGVDALLHVSQISYDHVAKPEDVYKIGDEIEAKVVDFKPEEKKISLSVKA 632



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 18/251 (7%)

Query: 283 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSC 337
           GDI     V  V+ GL +L +   T +  PA + +SD+ E+ + K     +E +  E + 
Sbjct: 392 GDILTGKVVQVVNGGLNVLYE--ETRIFIPASL-VSDLYEKNLDKYLDQDIEFQLTEFNP 448

Query: 338 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 397
            + RI+G R    +     KA+A + L      ++ GM V+G V  V  FGA +   GG 
Sbjct: 449 KKRRIIGNRKKLIVER---KAAAAKEL---FEKIEVGMTVEGTVKNVTDFGAFIDL-GGA 501

Query: 398 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE 457
             L  +  MS   +  P K FKVG  +   +  +   +I ++ K       L     YA 
Sbjct: 502 DGLLHISEMSWGRVESPKKMFKVGDTVKAFIKDINGDKIALSLKFDETNPWLNAEEKYAV 561

Query: 458 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 517
            T   +  G I ++   G FV    GV      S++  D   +P  +Y +G  ++ +++ 
Sbjct: 562 GT---VVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAKPEDVYKIGDEIEAKVVD 618

Query: 518 SIPASRRINLS 528
             P  ++I+LS
Sbjct: 619 FKPEEKKISLS 629



 Score = 42.0 bits (97), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G VV GK+  +  FGA V+   GV AL  +  +S   + KP   +K+G E+  +V+  K 
Sbjct: 562 GTVVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAKPEDVYKIGDEIEAKVVDFKP 621

Query: 433 -SKRITVTHKKTL 444
             K+I+++ K  L
Sbjct: 622 EEKKISLSVKALL 634



 Score = 41.2 bits (95), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%)

Query: 1234 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1293
            LS   D     L   E  +   +V G +  +T  G F+ L   +DA + +S +S  +V  
Sbjct: 542  LSLKFDETNPWLNAEEKYAVGTVVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAK 601

Query: 1294 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
            PE  + IG  +  +V+  +P  K++ +++K
Sbjct: 602  PEDVYKIGDEIEAKVVDFKPEEKKISLSVK 631


>gi|389859545|ref|YP_006361785.1| 30S ribosomal protein S1P [Chlamydia trachomatis F/SW5]
 gi|380248865|emb|CCE14152.1| SSU ribosomal protein S1P [Chlamydia trachomatis F/SW5]
          Length = 569

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K        + E+       VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIEVM----FPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1434
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 394
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 395 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 451
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
              +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EVMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 512 KCRIMSSIPASRRINLSF 529
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.0 bits (97), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 425
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 539
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 654 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471



 Score = 41.2 bits (95), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 131/584 (22%), Positives = 227/584 (38%), Gaps = 101/584 (17%)

Query: 545  GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL- 603
            G+++ G V  ++ + VVV V  K  S+G IP     D  E  TV       G E +  L 
Sbjct: 52   GAILKGTVVDISKDFVVVDVGLK--SEGVIPMSEFIDSSEGLTV-------GAEVEVYLD 102

Query: 604  -VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
               D+E   +L   K +     +Q     +H    S+V G +   ++ G  V     +  
Sbjct: 103  QTEDDEGKVVLSREKAT---RQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI--GMEA 157

Query: 663  FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 722
            F P S+  + +  +L    YVG+     IL +N +   + +S ++               
Sbjct: 158  FLPGSQIDNKKIKNLDD--YVGKVCEFKILKINVDRRNVVVSRRE--------------L 201

Query: 723  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------EHSDVY 776
            L  E+I+         +EL  +E   IG   +G V    DFGV +  +        +D+ 
Sbjct: 202  LEAERIS-------KKAEL--IEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMT 252

Query: 777  GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK--- 833
                 H      VE    ++  IL V K +  V L LK       +E N     +KK   
Sbjct: 253  WKRIRH--PSEMVELNQELEVIILSVDKEKGRVALGLKQ------KEHNPWEDIEKKYPP 304

Query: 834  -KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYNTQKF---PQK 888
             KR R              IV+++     +    E    I G   VS+ +  K    P +
Sbjct: 305  GKRVR------------GKIVKLLPYGAFI----EIEEGIEGLIHVSEMSWVKNIVDPNE 348

Query: 889  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 948
                G  V   V+++      G++ L LK     +T  +     +  Y +G  V AEI  
Sbjct: 349  VVNKGDEVEVVVLSI--QKDEGKISLGLK-----QTKHNPWDNIEEKYPIGLRVTAEIKN 401

Query: 949  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1008
            +      ++   G  G IHI++++  K   V +    FK G TV A I+  S   + KK 
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKK--VSHPSELFKKGNTVEAVIL--SVDKESKKI 457

Query: 1009 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1068
             L    + P+     E+    +F      +G  ++G V K+    A + +   ++  + +
Sbjct: 458  TLGVKQLTPNPWDEIEV----MF-----PVGSDISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
             + + +P    + +    IG  V+  V+ ++ + K + L ++ F
Sbjct: 509  SELSEKP--FAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKEF 550


>gi|295696379|ref|YP_003589617.1| RNA binding S1 domain-containing protein [Kyrpidia tusciae DSM 2912]
 gi|295411981|gb|ADG06473.1| RNA binding S1 domain protein [Kyrpidia tusciae DSM 2912]
          Length = 383

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 101/183 (55%), Gaps = 6/183 (3%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L P  I+ G V+ +T+ G F+ +   +D  V +S L+   VE P +    G  V  +VL 
Sbjct: 186  LQPGDIITGKVQRLTNFGAFVDVG-GVDGLVHISELAWHRVEHPSEVVKEGDEVTVKVLK 244

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
            V+P  +RV +++K ++    S          HVGD+V G ++R+ S+G F+ +E   + G
Sbjct: 245  VDPERERVSLSIKEANPGPWSGVS----ERYHVGDVVTGTVRRLVSFGAFVELE-PGVEG 299

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1430
            L H+S+++   +   + +   G++V+VKIL V++E +RISL ++ +    +  +++  +E
Sbjct: 300  LVHISQIANRRIGTPQEVLEPGQEVRVKILDVNEEDQRISLSIREAEGDRNRRDVERYNE 359

Query: 1431 EES 1433
             + 
Sbjct: 360  RQG 362



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            L  L  GDI+ G+++R+ ++G F+ +   +  GL H+SEL+   V++   + + G++V V
Sbjct: 183  LHRLQPGDIITGKVQRLTNFGAFVDVGGVD--GLVHISELAWHRVEHPSEVVKEGDEVTV 240

Query: 1398 KILKVDKEKRRISLGMKSS 1416
            K+LKVD E+ R+SL +K +
Sbjct: 241  KVLKVDPERERVSLSIKEA 259



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++PG ++ GKV  + +FGA V   GGV  L  +  ++   +  P +  K G E+  +VL 
Sbjct: 186 LQPGDIITGKVQRLTNFGAFVDV-GGVDGLVHISELAWHRVEHPSEVVKEGDEVTVKVLK 244

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQG 486
           V  +R  V+     +  K A    ++  ++R     +  G + ++   G FV    GV+G
Sbjct: 245 VDPERERVS-----LSIKEANPGPWSGVSERYHVGDVVTGTVRRLVSFGAFVELEPGVEG 299

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               S++       P  +   GQ V+ +I+      +RI+LS 
Sbjct: 300 LVHISQIANRRIGTPQEVLEPGQEVRVKILDVNEEDQRISLSI 342



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 142/345 (41%), Gaps = 25/345 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G VVKG++  ++     V        + P+  +S   +  P    +VG E+  RV  +  
Sbjct: 16  GDVVKGRITKIEDGQVFVDVGYKFDGVIPIGELSALRVESPSDVVQVGDEVEVRVQRIND 75

Query: 434 KRITVTHKKTLVKSKLAI--LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           +   +   K  V ++ A   L    E+ +       +  + K G       GV+ F P S
Sbjct: 76  EEGKLVLSKKAVDAEKAWERLQQRFESQETFEVQ--VADVVKGGLVADV--GVRAFIPAS 131

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSEDDLVKL--G 545
            L      E  S Y  G+ ++ ++     +  ++ LS       +  +  E+ L +L  G
Sbjct: 132 -LVERHFVEDFSEYK-GRTLRVKVAELDRSDNKVILSQKAVLEEEYQQKKEEVLHRLQPG 189

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFD-QLL 603
            +++G V  +T     V V   G   G +    LA H +EH +    V+K G E   ++L
Sbjct: 190 DIITGKVQRLTNFGAFVDV---GGVDGLVHISELAWHRVEHPS---EVVKEGDEVTVKVL 243

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D E   + LS K +   +       +   H   VV G V  ++  G FV     + G 
Sbjct: 244 KVDPERERVSLSIKEA---NPGPWSGVSERYHVGDVVTGTVRRLVSFGAFVELEPGVEGL 300

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
              S+  + +     +    GQ VR  ILDVN E  RI+LS++++
Sbjct: 301 VHISQIANRRIGTPQEVLEPGQEVRVKILDVNEEDQRISLSIREA 345



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 1334 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
            ++ +L  LH GD+V G+I ++E   +F+ +      G+  + ELS   V++   + + G+
Sbjct: 6    DMTDLVALHKGDVVKGRITKIEDGQVFVDV-GYKFDGVIPIGELSALRVESPSDVVQVGD 64

Query: 1394 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1432
            +V+V++ +++ E+ ++ L  K+   +   + LQ   E +
Sbjct: 65   EVEVRVQRINDEEGKLVLSKKAVDAEKAWERLQQRFESQ 103


>gi|312198706|ref|YP_004018767.1| RNA binding S1 domain-containing protein [Frankia sp. EuI1c]
 gi|311230042|gb|ADP82897.1| RNA binding S1 domain protein [Frankia sp. EuI1c]
          Length = 493

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 185/410 (45%), Gaps = 68/410 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 24   VAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 83

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHV--LSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1127
                +P E+           AV  HV  L + KE K  RL+L   +        + +   
Sbjct: 84   KHDVDPHEV----------VAVGDHVEALVLQKEDKEGRLILSKKR-----AQYERAWGT 128

Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
            ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +     
Sbjct: 129  IEKLKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----- 181

Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
                      ++ K++E+ +      +V LS R+ L+   S   S+              
Sbjct: 182  ----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF------------- 215

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   
Sbjct: 216  LSQLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVE 274

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1366
            VL V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++  
Sbjct: 275  VLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRVDE- 328

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             + GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +
Sbjct: 329  GIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA 378



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVAVGDHVEALVLQKEDKE 110

Query: 523 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  S +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLSQLAKG 222

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 813 LK 814
           LK
Sbjct: 375 LK 376



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVAVGDHVEALVLQKED 108

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLSQLA 220

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA 378


>gi|237802530|ref|YP_002887724.1| 30S ribosomal protein S1 [Chlamydia trachomatis B/Jali20/OT]
 gi|231273764|emb|CAX10545.1| SSU ribosomal protein S1P [Chlamydia trachomatis B/Jali20/OT]
          Length = 569

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K        + E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIE----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1434
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSTGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 394
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 395 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 451
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +   G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSTGDKV 529

Query: 512 KCRIMSSIPASRRINLSF 529
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.0 bits (97), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 425
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 539
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 654 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471


>gi|158317247|ref|YP_001509755.1| 30S ribosomal protein S1 [Frankia sp. EAN1pec]
 gi|158112652|gb|ABW14849.1| RNA binding S1 domain protein [Frankia sp. EAN1pec]
          Length = 493

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 190/422 (45%), Gaps = 67/422 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 24   VAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSI 83

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 84   KHDVDPHEV------VTVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 130

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 131  KLKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 181

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 182  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LA 217

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 218  QLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 276

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   +
Sbjct: 277  DVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRVDE-GI 330

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1428
             GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +   N+A +L   
Sbjct: 331  EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NEASSLVAE 387

Query: 1429 SE 1430
             E
Sbjct: 388  GE 389



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKEDKE 110

Query: 523 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 222

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 813 LK 814
           LK
Sbjct: 375 LK 376



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 150/353 (42%), Gaps = 31/353 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKED 108

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 220

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S+
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEASS 383


>gi|340794195|ref|YP_004759658.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
 gi|340534105|gb|AEK36585.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
          Length = 486

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 173/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +    +P E+ E      IG  V   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVE------IGDEVDAL 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKDGRLILSKKR-----AQYERAWGTIEELKEKDEPVTGTVIEVVKG--GLIL 138

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG---------------QELEAKIIELDKQRN---N 180

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E H+D  + I   G+
Sbjct: 282  WRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHIDVPDQIVTVGQ 340

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
             + VK++ +D E+RRISL +K +
Sbjct: 341  DLMVKVIDIDLERRRISLSLKQA 363



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 167/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG+  ++G E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEIGDEVDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KDGRLILSKKRAQYERAWGTIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQELEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+  +       +   VGQ +   ++D++ E  RI+LSLKQ+     D  F +
Sbjct: 315 IEGLVHISELAERHIDVPDQIVTVGQDLMVKVIDIDLERRRISLSLKQA-----DEDFTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWMEGF 405


>gi|289705499|ref|ZP_06501891.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
 gi|289557728|gb|EFD51027.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
          Length = 485

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 187/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IGS + L    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 10   VAINDIGSAEDLLAAIDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 69

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+        +G  V   VL+  KE K  RL+L   +        DI     +
Sbjct: 70   KHDVDPDEV------VAVGDTVEALVLT--KEDKEGRLILSKKRAQYERAWGDI-----E 116

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 117  KIKEEDGVVEGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG--------- 165

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+           L K+E
Sbjct: 166  ------QKLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSNF----------LHKLE 206

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
                  +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 207  ---KGQVRNGTVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 262

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
             V+   +RV ++LK      A+Q +   L +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 263  EVDMDRERVSLSLK------ATQEDPWQLFARTHALGQVVPGKVTKLVPFGAFVRVED-G 315

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+  H+D  E +    +++ VK++ +D E+RRISL +K +
Sbjct: 316  IEGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSLKQA 364



 Score = 40.8 bits (94), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 143/348 (41%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 35  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVAVGDTVEALVLTKED 94

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E     +  G + ++ K G  +    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGDIEKIKEEDG--VVEGTVIEVVKGGLILDI--GLRGFLPAS 150

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 151 LVEMRRVRDLAP----YIGQKLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSNFLHKLE 206

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + +G V  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRNGTVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 260

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 261 VLEVDMDRERVSLSLKATQEDPWQLF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 316

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 317 EGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSLKQA 364


>gi|15604817|ref|NP_219601.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/UW-3/CX]
 gi|255506673|ref|ZP_05382312.1| 30S ribosomal protein S1 [Chlamydia trachomatis D(s)2923]
 gi|385243304|ref|YP_005811150.1| 30S ribosomal protein S1P [Chlamydia trachomatis D-EC]
 gi|385244184|ref|YP_005812028.1| 30S ribosomal protein S1P [Chlamydia trachomatis D-LC]
 gi|385245070|ref|YP_005813893.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/150]
 gi|386262454|ref|YP_005815733.1| 30S ribosomal protein S1P [Chlamydia trachomatis Sweden2]
 gi|389857795|ref|YP_006360037.1| 30S ribosomal protein S1P [Chlamydia trachomatis F/SW4]
 gi|389858668|ref|YP_006360909.1| 30S ribosomal protein S1P [Chlamydia trachomatis E/SW3]
 gi|6831540|sp|O84100.1|RS1_CHLTR RecName: Full=30S ribosomal protein S1
 gi|3328495|gb|AAC67689.1| S1 Ribosomal Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|289525142|emb|CBJ14614.1| SSU ribosomal protein S1P [Chlamydia trachomatis Sweden2]
 gi|296434686|gb|ADH16864.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/150]
 gi|297748227|gb|ADI50773.1| SSU ribosomal protein S1P [Chlamydia trachomatis D-EC]
 gi|297749107|gb|ADI51785.1| SSU ribosomal protein S1P [Chlamydia trachomatis D-LC]
 gi|380249742|emb|CCE13263.1| SSU ribosomal protein S1P [Chlamydia trachomatis F/SW4]
 gi|380250617|emb|CCE12374.1| SSU ribosomal protein S1P [Chlamydia trachomatis E/SW3]
 gi|440525012|emb|CCP50263.1| 30S ribosomal protein S1 [Chlamydia trachomatis K/SotonK1]
 gi|440526794|emb|CCP52278.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/SotonD1]
 gi|440527688|emb|CCP53172.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/SotonD5]
 gi|440528579|emb|CCP54063.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/SotonD6]
 gi|440529470|emb|CCP54954.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/SotonE4]
 gi|440530363|emb|CCP55847.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/SotonE8]
 gi|440531260|emb|CCP56770.1| 30S ribosomal protein S1 [Chlamydia trachomatis F/SotonF3]
 gi|440532151|emb|CCP57661.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/SotonG1]
          Length = 569

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K        + E+       VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIEVM----FPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1434
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 394
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 395 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 451
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
              +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EVMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 512 KCRIMSSIPASRRINLSF 529
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 425
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 539
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 654 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471



 Score = 40.8 bits (94), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 131/584 (22%), Positives = 227/584 (38%), Gaps = 101/584 (17%)

Query: 545  GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL- 603
            G+++ G V  ++ + VVV V  K  S+G IP     D  E  TV       G E +  L 
Sbjct: 52   GAILKGTVVDISKDFVVVDVGLK--SEGVIPMSEFIDSSEGLTV-------GAEVEVYLD 102

Query: 604  -VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
               D+E   +L   K +     +Q     +H    S+V G +   ++ G  V     +  
Sbjct: 103  QTEDDEGKVVLSREKAT---RQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI--GMEA 157

Query: 663  FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 722
            F P S+  + +  +L    YVG+     IL +N +   + +S ++               
Sbjct: 158  FLPGSQIDNKKIKNLDD--YVGKVCEFKILKINVDRRNVVVSRRE--------------L 201

Query: 723  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------EHSDVY 776
            L  E+I+         +EL  +E   IG   +G V    DFGV +  +        +D+ 
Sbjct: 202  LEAERIS-------KKAEL--IEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMT 252

Query: 777  GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK--- 833
                 H      VE    ++  IL V K +  V L LK       +E N     +KK   
Sbjct: 253  WKRIRH--PSEMVELNQELEVIILSVDKEKGRVALGLKQ------KEHNPWEDIEKKYPP 304

Query: 834  -KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYNTQKF---PQK 888
             KR R              IV+++     +    E    I G   VS+ +  K    P +
Sbjct: 305  GKRVR------------GKIVKLLPYGAFI----EIEEGIEGLIHVSEMSWVKNIVDPNE 348

Query: 889  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 948
                G  V   V+++      G++ L LK     +T  +     +  Y +G  V AEI  
Sbjct: 349  VVNKGDEVEVVVLSI--QKDEGKISLGLK-----QTKHNPWDNIEEKYPIGLRVTAEIKN 401

Query: 949  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1008
            +      ++   G  G IHI++++  K   V +    FK G TV A I+  S   + KK 
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKK--VSHPSELFKKGNTVEAVIL--SVDKESKKI 457

Query: 1009 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1068
             L    + P+     E+    +F      +G  ++G V K+    A + +   ++  + +
Sbjct: 458  TLGVKQLTPNPWDEIEV----MF-----PVGSDISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
             + + +P    + +    IG  V+  V+ ++ + K + L ++ F
Sbjct: 509  SELSEKP--FAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKEF 550


>gi|453363488|dbj|GAC80781.1| 30S ribosomal protein S1 [Gordonia malaquae NBRC 108250]
          Length = 491

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +PSE+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VTVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          V+ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------VEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D ++RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI ++     D  I  G I K+++    +      +G  P  EL +    +PS +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVTVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  + +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLNQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVSVGDDAMV 346

Query: 798 AILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLDRRRISLSLKQANEDYAEEFDPSK 377



 Score = 47.0 bits (110), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVTVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ V+ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   VG      ++D++ +  RI+LSLKQ+
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQA 365


>gi|377557965|ref|ZP_09787587.1| 30S ribosomal protein S1 [Gordonia otitidis NBRC 100426]
 gi|377524870|dbj|GAB32752.1| 30S ribosomal protein S1 [Gordonia otitidis NBRC 100426]
          Length = 487

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VDD-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  ++   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDDG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 798 AILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 48.5 bits (114), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 31/354 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDDGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|288920743|ref|ZP_06415044.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
 gi|288347871|gb|EFC82147.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
          Length = 492

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 188/418 (44%), Gaps = 67/418 (16%)

Query: 1019 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1068
             + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   
Sbjct: 23   QVAVNDIGSAEDFLAAVDKTIKFFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELS 82

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            +    +P E+        +G  V   VL   KE K  RL+L   +        + +   +
Sbjct: 83   IKHDVDPHEV------VSVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTI 129

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +      
Sbjct: 130  EKLKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------ 181

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                     ++ K++E+ +      +V LS R+ L+   S   S+              +
Sbjct: 182  ---------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------L 216

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 217  AQLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 275

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 276  LDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRV-DEG 329

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
            + GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +   N+A  L
Sbjct: 330  IEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NEASAL 384



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLQKEDKE 110

Query: 523 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 222

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 813 LK 814
           LK
Sbjct: 375 LK 376



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 151/353 (42%), Gaps = 31/353 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 49  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLQKED 108

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 220

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S 
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEASA 383


>gi|449134245|ref|ZP_21769746.1| 30S ribosomal protein S1 [Rhodopirellula europaea 6C]
 gi|448886875|gb|EMB17263.1| 30S ribosomal protein S1 [Rhodopirellula europaea 6C]
          Length = 598

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 96/159 (60%), Gaps = 5/159 (3%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            V+G V+N+T+ G FI L   +D  + +S++S    +  P +    G+ +  R+LSV+   
Sbjct: 396  VKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQR 455

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ + LK  D+      +I +      G +V G++ ++ ++G+FI +E+  L GL H+S
Sbjct: 456  RRIALGLKQLDN-DPWDGDIPD--KYQPGQLVKGEVTKITNFGVFIGLED-GLEGLLHIS 511

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            EL+E  V++ E + + G+ ++VK+L+VD ++R+I L +K
Sbjct: 512  ELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLK 550



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 184/399 (46%), Gaps = 56/399 (14%)

Query: 1032 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1091
            E+ D + G+ V G + ++++EWAL+ +    K++  +    + P E Q       IG  V
Sbjct: 39   EQQDYNSGKIVDGRIVELNDEWALVDVG--FKSEGTVGLDEWGPEEDQP-----KIGDTV 91

Query: 1092 TGHVLSINKEKKLLRLVLRPF-QDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSG 1148
               +  +  E   L     P+    +S +  +  I  + M   + EG +V G + + + G
Sbjct: 92   KVLIEEMEDE---LGAADDPYGMISLSKRKAEKIIEWEAMMETVAEGQVVTGTVIRKIKG 148

Query: 1149 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1208
              GL+V IG ++     F     + +  P    D G F        G+ V+ +VL+I  T
Sbjct: 149  --GLLVDIGVNV-----FLPGSQVDIRRP---GDIGDF-------IGRVVQAEVLKIDDT 191

Query: 1209 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1268
             R   ++ +S RS ++     + + L             +++L    I +G VKN+   G
Sbjct: 192  RR---NIVISRRSLIERQREEDRAYL-------------MQELEVGQIRKGIVKNIADFG 235

Query: 1269 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
             F+ L   +D  + +++++   +  P +   I + +  +VL ++   +++ + LK  D  
Sbjct: 236  AFVDLG-GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRN 294

Query: 1329 TASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIE 1386
                 E    + ++H G++V      V SYG F+ +E   + GL H+SE+S    V++  
Sbjct: 295  PWENIETKYPVESVHPGEVV-----NVMSYGAFVKLE-PGIEGLVHISEMSWTKRVNHPS 348

Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
             +   G+K+ V IL VD E +++SLGMK +  KN  D +
Sbjct: 349  ELVNIGDKIDVMILGVDPEGQQLSLGMKQT-LKNPWDEV 386



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 171/469 (36%), Gaps = 71/469 (15%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           V  G VV G VI     G +V    GV    P    S+ +I +PG       + + RV+ 
Sbjct: 132 VAEGQVVTGTVIRKIKGGLLVDI--GVNVFLP---GSQVDIRRPGDI----GDFIGRVVQ 182

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 482
            +  +I  T +  ++  +  I     E    L        I  G +  I   G FV    
Sbjct: 183 AEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDL-G 241

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 542
           G+ G    +++  +    P+ M  + Q ++ +++      ++I L    K     E+   
Sbjct: 242 GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIET 301

Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------G 596
           K        V+ V P  VV  +    + K     E L  H+   +  K V  P      G
Sbjct: 302 KY------PVESVHPGEVVNVMSYGAFVKLEPGIEGLV-HISEMSWTKRVNHPSELVNIG 354

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
            + D  +L +D E   L L  K +L N   ++            V G V N+   G F+ 
Sbjct: 355 DKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV---LERYPEGKDVKGKVRNLTNYGAFIE 411

Query: 656 FLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
               + G    S     ++ A  S+    GQ +   IL V+ +  RI L LKQ      D
Sbjct: 412 LEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDNDPWD 471

Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
                +                          +  G +++G+V +  +FGV +  E+   
Sbjct: 472 GDIPDK--------------------------YQPGQLVKGEVTKITNFGVFIGLEDG-- 503

Query: 775 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 816
           + G +   +LA   VE        G  I+  +L V   ER + LSLK V
Sbjct: 504 LEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 552



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IG++V   VL ++   + + ++ ++   R   +     +  L VG I  G +K +  +G 
Sbjct: 177  IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 236

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
            F+ +   +  GL H+++++ + + +   +    ++++VK+L +D+EK++I+LG+K    +
Sbjct: 237  FVDLGGID--GLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKD-R 293

Query: 1420 NDADNLQMSSEEES 1433
            N  +N++     ES
Sbjct: 294  NPWENIETKYPVES 307



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 167/413 (40%), Gaps = 70/413 (16%)

Query: 64  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
           +G++V   VL++DD ++ I   +  L  R     +   ++ ++ G +    VK+I D G 
Sbjct: 177 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 236

Query: 124 ILHFGLPSFTGFL------------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            +  G     G L            P   L+ +  I+VK        V  IDR ++ + L
Sbjct: 237 FVDLG--GIDGLLHITDMAWERIGHPTEMLSIDQEIEVK--------VLHIDREKQKIAL 286

Query: 172 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 228
                D +      TK      ++ + PG +V+     ++  G  +       G V I  
Sbjct: 287 GLKQKDRNPWENIETK----YPVESVHPGEVVN-----VMSYGAFVKLEPGIEGLVHISE 337

Query: 229 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSH--- 279
           +  T    +     N   K++  IL VDP  + + L +     NP+  +  R P      
Sbjct: 338 MSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEVLERYPEGKDVK 397

Query: 280 VKVGDIYDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEG 335
            KV ++ +    + ++ G+  LL +     +  ++ P+ V            LEK    G
Sbjct: 398 GKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEV------------LEK----G 441

Query: 336 SCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 392
             +  RIL     R    L    L    ++G +      +PG +VKG+V  + +FG  + 
Sbjct: 442 QEIECRILSVDEQRRRIALGLKQLDNDPWDGDI--PDKYQPGQLVKGEVTKITNFGVFIG 499

Query: 393 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 443
              G++ L  +  ++E ++  P +  KVG  +  +VL V +  ++I ++ K+ 
Sbjct: 500 LEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 552


>gi|358463314|ref|ZP_09173384.1| RNA binding S1 domain protein [Frankia sp. CN3]
 gi|357070427|gb|EHI80131.1| RNA binding S1 domain protein [Frankia sp. CN3]
          Length = 492

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 189/423 (44%), Gaps = 67/423 (15%)

Query: 1019 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1068
             + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   
Sbjct: 23   QVAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELS 82

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            +    +P E+        +G  V   VL   KE K  RL+L   +        + +   +
Sbjct: 83   IKHDVDPHEV------VSVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTI 129

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +      
Sbjct: 130  EKLKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------ 181

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                     ++ K++E+ +      +V LS R+ L+   S   S+              +
Sbjct: 182  ---------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------L 216

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 217  SQLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 275

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   
Sbjct: 276  LDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGKVTKLVPFGAFVRVDE-G 329

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +   N+A  L  
Sbjct: 330  IEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NEASGLAG 386

Query: 1428 SSE 1430
              E
Sbjct: 387  DGE 389



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDKE 110

Query: 523 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  S +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLSQLAKG 222

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG V+ GKV
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGKV 314

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 813 LK 814
           LK
Sbjct: 375 LK 376



 Score = 43.9 bits (102), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 149/352 (42%), Gaps = 31/352 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKED 108

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLSQLA 220

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGKVTKLVPFGAFVRVDEGI 330

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEAS 382


>gi|417300529|ref|ZP_12087738.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47]
 gi|421613092|ref|ZP_16054184.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH28]
 gi|327543203|gb|EGF29638.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47]
 gi|408496112|gb|EKK00679.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH28]
          Length = 598

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 96/159 (60%), Gaps = 5/159 (3%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            V+G V+N+T+ G FI L   +D  + +S++S    +  P +    G+ +  R+LSV+   
Sbjct: 396  VKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQR 455

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ + LK  D+      +I +      G +V G++ ++ ++G+FI +E+  L GL H+S
Sbjct: 456  RRIALGLKQLDN-DPWDGDIPD--KYQPGQLVKGEVTKITNFGVFIGLED-GLEGLLHIS 511

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            EL+E  V++ E + + G+ ++VK+L+VD ++R+I L +K
Sbjct: 512  ELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLK 550



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 184/399 (46%), Gaps = 56/399 (14%)

Query: 1032 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1091
            E+ D + G+ V G + ++++EWAL+ +    K++  +    + P E Q       IG  V
Sbjct: 39   EQQDYNSGKIVDGRIVELNDEWALVDVG--FKSEGTVGLDEWGPEEDQP-----KIGDTV 91

Query: 1092 TGHVLSINKEKKLLRLVLRPF-QDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSG 1148
               +  +  E   L     P+    +S +  +  I  + M   + EG +V G + + + G
Sbjct: 92   KVLIEEMEDE---LGAADDPYGMISLSKRKAEKIIEWEAMMETVAEGQVVTGTVIRKIKG 148

Query: 1149 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1208
              GL+V IG ++     F     + +  P    D G F        G+ V+ +VL+I  T
Sbjct: 149  --GLLVDIGVNV-----FLPGSQVDIRRP---GDIGDF-------IGRVVQAEVLKIDDT 191

Query: 1209 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1268
             R   ++ +S RS ++     + + L             +++L    I +G VKN+   G
Sbjct: 192  RR---NIVISRRSLIERQREEDRAYL-------------MQELEVGQIRKGIVKNIADFG 235

Query: 1269 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328
             F+ L   +D  + +++++   +  P +   I + +  +VL ++   +++ + LK  D  
Sbjct: 236  AFVDLG-GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRN 294

Query: 1329 TASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIE 1386
                 E    + ++H G++V      V SYG F+ +E   + GL H+SE+S    V++  
Sbjct: 295  PWENIETKYPVESVHPGEVV-----NVMSYGAFVKLE-PGIEGLVHISEMSWTKRVNHPS 348

Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
             +   G+K+ V IL VD E +++SLGMK +  KN  D +
Sbjct: 349  ELVNIGDKIDVMILGVDPEGQQLSLGMKQT-LKNPWDEV 386



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 171/469 (36%), Gaps = 71/469 (15%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           V  G VV G VI     G +V    GV    P    S+ +I +PG       + + RV+ 
Sbjct: 132 VAEGQVVTGTVIRKIKGGLLVDI--GVNVFLP---GSQVDIRRPGDI----GDFIGRVVQ 182

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 482
            +  +I  T +  ++  +  I     E    L        I  G +  I   G FV    
Sbjct: 183 AEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDL-G 241

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 542
           G+ G    +++  +    P+ M  + Q ++ +++      ++I L    K     E+   
Sbjct: 242 GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIET 301

Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------G 596
           K        V+ V P  VV  +    + K     E L  H+   +  K V  P      G
Sbjct: 302 KY------PVESVHPGEVVNVMSYGAFVKLEPGIEGLV-HISEMSWTKRVNHPSELVNIG 354

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
            + D  +L +D E   L L  K +L N   ++            V G V N+   G F+ 
Sbjct: 355 DKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV---LERYPEGKDVKGKVRNLTNYGAFIE 411

Query: 656 FLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
               + G    S     ++ A  S+    GQ +   IL V+ +  RI L LKQ      D
Sbjct: 412 LEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDNDPWD 471

Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
                +                          +  G +++G+V +  +FGV +  E+   
Sbjct: 472 GDIPDK--------------------------YQPGQLVKGEVTKITNFGVFIGLEDG-- 503

Query: 775 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 816
           + G +   +LA   VE        G  I+  +L V   ER + LSLK V
Sbjct: 504 LEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 552



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IG++V   VL ++   + + ++ ++   R   +     +  L VG I  G +K +  +G 
Sbjct: 177  IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 236

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
            F+ +   +  GL H+++++ + + +   +    ++++VK+L +D+EK++I+LG+K    +
Sbjct: 237  FVDLGGID--GLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKD-R 293

Query: 1420 NDADNLQMSSEEES 1433
            N  +N++     ES
Sbjct: 294  NPWENIETKYPVES 307



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 167/413 (40%), Gaps = 70/413 (16%)

Query: 64  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
           +G++V   VL++DD ++ I   +  L  R     +   ++ ++ G +    VK+I D G 
Sbjct: 177 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 236

Query: 124 ILHFGLPSFTGFL------------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
            +  G     G L            P   L+ +  I+VK        V  IDR ++ + L
Sbjct: 237 FVDLG--GIDGLLHITDMAWERIGHPTEMLSIDQEIEVK--------VLHIDREKQKIAL 286

Query: 172 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 228
                D +      TK      ++ + PG +V+     ++  G  +       G V I  
Sbjct: 287 GLKQKDRNPWENIETK----YPVESVHPGEVVN-----VMSYGAFVKLEPGIEGLVHISE 337

Query: 229 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSH--- 279
           +  T    +     N   K++  IL VDP  + + L +     NP+  +  R P      
Sbjct: 338 MSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEVLERYPEGKDVK 397

Query: 280 VKVGDIYDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEG 335
            KV ++ +    + ++ G+  LL +     +  ++ P+ V            LEK    G
Sbjct: 398 GKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEV------------LEK----G 441

Query: 336 SCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 392
             +  RIL     R    L    L    ++G +      +PG +VKG+V  + +FG  + 
Sbjct: 442 QEIECRILSVDEQRRRIALGLKQLDNDPWDGDI--PDKYQPGQLVKGEVTKITNFGVFIG 499

Query: 393 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 443
              G++ L  +  ++E ++  P +  KVG  +  +VL V +  ++I ++ K+ 
Sbjct: 500 LEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 552


>gi|308177716|ref|YP_003917122.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117]
 gi|307745179|emb|CBT76151.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117]
          Length = 491

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 188/409 (45%), Gaps = 64/409 (15%)

Query: 1019 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1068
            ++ +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   
Sbjct: 13   VVAINDIGSAEDFLAAVDATIKYFNDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELS 72

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            +    +P E+        +G +V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGEV------VTVGDSVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QEIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 146/365 (40%), Gaps = 46/365 (12%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  +  G + K++     +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDSVEALVLTKE 97

Query: 520 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKIKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 634
              A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 754
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 755 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 809
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 810 DLSLK 814
            LSLK
Sbjct: 362 SLSLK 366



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           EL +        +  VG  +  +++      RRI+LS 
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSL 365



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG+   VG  +   VL  + 
Sbjct: 39  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDSVEALVLTKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|237804447|ref|YP_002888601.1| 30S ribosomal protein S1 [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231272747|emb|CAX09651.1| SSU ribosomal protein S1P [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 569

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K        + E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIE----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1434
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHNAEEESSD 567



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 394
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 395 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 451
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 512 KCRIMSSIPASRRINLSF 529
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 425
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 539
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 654 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471


>gi|46581552|ref|YP_012360.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601286|ref|YP_965686.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris DP4]
 gi|387154752|ref|YP_005703688.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris RCH1]
 gi|46450974|gb|AAS97620.1| ribosomal protein S1 [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561515|gb|ABM27259.1| SSU ribosomal protein S1P [Desulfovibrio vulgaris DP4]
 gi|311235196|gb|ADP88050.1| ribosomal protein S1 [Desulfovibrio vulgaris RCH1]
          Length = 577

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 153/349 (43%), Gaps = 34/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G VVKGK   +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQVVKGKAKNITEYGVFVDL-GGLDGLLHITDMSWKRIRHPKELVSLGQELELKVLSFDR 266

Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
            S+++++  K+ +      I + + E    L   G +T +  +G FV    GV+G    S
Sbjct: 267 DSQKVSLGMKQLVADPWQDITAKFPEG---LRGQGKVTNLVDYGAFVELEPGVEGLVHIS 323

Query: 492 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL----GS 546
           E+        PS M  VG  V+  I+   P  +RI+L   MK  + +  ++V      G+
Sbjct: 324 EMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLG--MKQVKPNPWEVVAEKYPEGT 381

Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 600
           ++ GV+  +T   + +     G   G     H++D     +  K +  P   +       
Sbjct: 382 ILEGVIKNITEFGMFI-----GIEDGIDGLIHVSD----ISWTKKIRHPNEMYKVGDVVQ 432

Query: 601 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 658
            ++L +D E+    L  K    +   ++P+     +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDQENEKFTLGVKQLAEDPWSRVPA----TYPVGTLVTGSVTNITDFGLFVEVEE 488

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            + G    S+    +    S+ Y  GQ +++ ++ V++E  R+ LS+KQ
Sbjct: 489 GIEGLVHVSEISQKKIKSPSEIYKEGQEIQAKVIHVSAEERRLGLSIKQ 537



 Score = 77.0 bits (188), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 90/160 (56%), Gaps = 6/160 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1314
            I++G +KN+T  G FI +   +D  + +S++S    +  P + + +G +V  +VL+V+  
Sbjct: 382  ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNEMYKVGDVVQAKVLTVDQE 441

Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
            +++  + +K       S+      +   VG +V G +  +  +GLF+ +E   + GL HV
Sbjct: 442  NEKFTLGVKQLAEDPWSRVP----ATYPVGTLVTGSVTNITDFGLFVEVEE-GIEGLVHV 496

Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            SE+S+  + +   IY+ G++++ K++ V  E+RR+ L +K
Sbjct: 497  SEISQKKIKSPSEIYKEGQEIQAKVIHVSAEERRLGLSIK 536



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 7/165 (4%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L    +V+G  KN+T  G F+ L   LD  + ++++S   +  P++   +G+ +  +VLS
Sbjct: 205  LEEGQVVKGKAKNITEYGVFVDLG-GLDGLLHITDMSWKRIRHPKELVSLGQELELKVLS 263

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
             +  S++V + +K    +  +    +  +    G    G++  +  YG F+ +E   + G
Sbjct: 264  FDRDSQKVSLGMK----QLVADPWQDITAKFPEGLRGQGKVTNLVDYGAFVELE-PGVEG 318

Query: 1371 LCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            L H+SE+S    + +   + R G++V+V IL VD +K+RISLGMK
Sbjct: 319  LVHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLGMK 363



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            L  L  G +V G+ K +  YG+F+ +    L GL H++++S   + + + +   G+++++
Sbjct: 202  LRTLEEGQVVKGKAKNITEYGVFVDL--GGLDGLLHITDMSWKRIRHPKELVSLGQELEL 259

Query: 1398 KILKVDKEKRRISLGMK 1414
            K+L  D++ +++SLGMK
Sbjct: 260  KVLSFDRDSQKVSLGMK 276


>gi|405981074|ref|ZP_11039403.1| 30S ribosomal protein S1 [Actinomyces neuii BVS029A5]
 gi|404393093|gb|EJZ88150.1| 30S ribosomal protein S1 [Actinomyces neuii BVS029A5]
          Length = 490

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 140/292 (47%), Gaps = 43/292 (14%)

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
            +++    E  +V G + +++ G  GL+V IG   +      E++ +    P  G +    
Sbjct: 116  SIEKIKQEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 169

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHL 1245
                       ++ K++E+ +      +V LS R+ L+   S   SS L T         
Sbjct: 170  -----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSSFLQT--------- 206

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
                 L    I  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V 
Sbjct: 207  -----LQKGQIRNGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVT 260

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1364
              VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E
Sbjct: 261  VEVLDVDMDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVE 315

Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  + GL H+SEL+  HVD  + + + GE++ VK++ +D ++RRISL +K +
Sbjct: 316  D-GIEGLVHISELAVRHVDLPDQVVKVGEEIFVKVIDIDLDRRRISLSLKQA 366



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G +  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   VL 
Sbjct: 207 LQKGQIRNGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLD 265

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 266 VDMDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 322

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +     P  +  VG+ +  +++      RRI+LS 
Sbjct: 323 HISELAVRHVDLPDQVVKVGEEIFVKVIDIDLDRRRISLSL 363



 Score = 44.7 bits (104), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 34/220 (15%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           +++ LD   +N++LS +  L  +  ++ S     +    + +G V +I+  G FV  LG 
Sbjct: 173 KIIELDKNRNNVVLSRRAWLEQTQSEVRSSFLQTLQKGQIRNGVVSSIVNFGAFVD-LGG 231

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+         S+   VGQ V   +LDV+ +  R++LSLK +      A F +
Sbjct: 232 VDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQA-FAR 290

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
            H                           IG V+ GKV +   FG  V  E+  +    I
Sbjct: 291 TH--------------------------AIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHI 324

Query: 780 T-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
           +     H  L    V+ G  I   ++D+    R + LSLK
Sbjct: 325 SELAVRHVDLPDQVVKVGEEIFVKVIDIDLDRRRISLSLK 364



 Score = 41.6 bits (96), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 31/259 (11%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM---- 516
           +  G + ++ K G  V    G++GF P S  E+      +P    +VG+ ++ +I+    
Sbjct: 126 VVTGTVIEVVKGGLIVDI--GLRGFLPASLVEMRRVRDLQP----YVGREIEAKIIELDK 179

Query: 517 --SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 574
             +++  SRR  L       R S    ++ G + +GVV  +      V +   G   G +
Sbjct: 180 NRNNVVLSRRAWLEQTQSEVRSSFLQTLQKGQIRNGVVSSIVNFGAFVDL---GGVDGLV 236

Query: 575 PTEHLA-DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-S 632
               L+  H++H + +  V +P     ++L +D +   + LS K     + Q+ P  A +
Sbjct: 237 HVSELSWKHIDHPSEVVEVGQPVTV--EVLDVDMDRERVSLSLK-----ATQEDPWQAFA 289

Query: 633 HIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADL-SKTYYVGQSVRS 689
             H    VV G V  ++  G FVR    + G    S+ AV  +  DL  +   VG+ +  
Sbjct: 290 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAV--RHVDLPDQVVKVGEEIFV 347

Query: 690 NILDVNSETGRITLSLKQS 708
            ++D++ +  RI+LSLKQ+
Sbjct: 348 KVIDIDLDRRRISLSLKQA 366


>gi|430743122|ref|YP_007202251.1| 30S ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
 gi|430014842|gb|AGA26556.1| ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
          Length = 632

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 100/167 (59%), Gaps = 5/167 (2%)

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSV 1311
            P  +++G V+N+T+ G FI +   +D  + +S++S    +  P +    G+ ++ +VL+V
Sbjct: 381  PGTMIEGTVRNLTNYGAFIEIEEGIDGLLHISDMSWTRKIGHPNELLEKGQRLSCQVLNV 440

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1371
            +   KR+ + LK        +++I N       D+V G++ ++ ++G+F+ +E   L GL
Sbjct: 441  DQERKRIALGLKQL-REDPWETDIPN--RYEPNDVVKGKVTKLTNFGVFVELE-PGLEGL 496

Query: 1372 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
             H+SEL++  VD+ E + + G+ ++VKIL+VD+ +R+I L  K +++
Sbjct: 497  LHISELADHKVDSPEEVVKVGDDIEVKILRVDRGERKIGLSRKKAHW 543



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 139/285 (48%), Gaps = 40/285 (14%)

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
            HEGD+V G++++ +   GGL+V IG +++               P S  D  +   ++ Y
Sbjct: 122  HEGDVVKGKVTRKIK--GGLLVDIGVNVFL--------------PASQVDIRRPSDIADY 165

Query: 1193 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
             + + ++C +L+I     G  ++ +S R  ++         L             + ++ 
Sbjct: 166  IDSE-IECMILKID---EGRRNIVVSRRKLIEITREQQKKQL-------------LAEIE 208

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
            P  +  G VKN+   G F+ L   +D  + ++++S G +  P     I   +   VL V+
Sbjct: 209  PGQVRMGTVKNIADFGAFVDLG-GIDGLLHITDMSWGRINHPSDMVKIDDQIEVMVLHVD 267

Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
               +++ + LK    ++AS  E N      VG  V+G++  V SYG F+ +E   + GL 
Sbjct: 268  KDREKIALGLK---QKSASPWE-NVADKYPVGTRVMGEVVNVMSYGAFVKLEE-GIEGLV 322

Query: 1373 HVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            H+SE+S    +++   + +  +K++V +L ++KEK+ ISLGMK +
Sbjct: 323  HISEMSWTKRINHPSELVQISDKIEVVVLGINKEKQEISLGMKQT 367



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 177/461 (38%), Gaps = 66/461 (14%)

Query: 283 GDIYDQSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS 336
           GD+  + KV R  +G GLL+DI      P++ V       I+D  + E+  +  K  EG 
Sbjct: 124 GDVV-KGKVTRKIKG-GLLVDIGVNVFLPASQVDIRRPSDIADYIDSEIECMILKIDEGR 181

Query: 337 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 396
             R  ++  R L  +     K           ++++PG V  G V  +  FGA V   GG
Sbjct: 182 --RNIVVSRRKLIEITREQQKKQLL-------AEIEPGQVRMGTVKNIADFGAFVDL-GG 231

Query: 397 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSS 454
           +  L  +  MS   I  P    K+  ++   VL V   R  I +  K+        +   
Sbjct: 232 IDGLLHITDMSWGRINHPSDMVKIDDQIEVMVLHVDKDREKIALGLKQKSASPWENVADK 291

Query: 455 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE-PSSMYHVGQVVKC 513
           Y   T R++  G +  +  +G FV+   G++G    SE+        PS +  +   ++ 
Sbjct: 292 YPVGT-RVM--GEVVNVMSYGAFVKLEEGIEGLVHISEMSWTKRINHPSELVQISDKIEV 348

Query: 514 RIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGY 569
            ++      + I+L   MK T+ +  D V      G+++ G V  +T     + +     
Sbjct: 349 VVLGINKEKQEISLG--MKQTQTNPWDQVAGKYPPGTMIEGTVRNLTNYGAFIEI----- 401

Query: 570 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD----------QLLVLDNESSNLLLSAKYS 619
                  E   D L H + M    K G+  +          Q+L +D E   + L  K  
Sbjct: 402 -------EEGIDGLLHISDMSWTRKIGHPNELLEKGQRLSCQVLNVDQERKRIALGLK-- 452

Query: 620 LINSAQQLPSDA------SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 673
                 QL  D       +   PN VV G V  +   G FV     L G    S+  D +
Sbjct: 453 ------QLREDPWETDIPNRYEPNDVVKGKVTKLTNFGVFVELEPGLEGLLHISELADHK 506

Query: 674 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
                +   VG  +   IL V+    +I LS K++  +  D
Sbjct: 507 VDSPEEVVKVGDDIEVKILRVDRGERKIGLSRKKAHWTKGD 547



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 107/478 (22%), Positives = 187/478 (39%), Gaps = 99/478 (20%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK-VGAELVFRVLGVK 432
           G VVKGKV      G +V    GV    P    S+ +I +P      + +E+   +L + 
Sbjct: 124 GDVVKGKVTRKIKGGLLVDI--GVNVFLP---ASQVDIRRPSDIADYIDSEIECMILKID 178

Query: 433 SKR--ITVTHKK----TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
             R  I V+ +K    T  + K  +L+       R+   G +  I   G FV    G+ G
Sbjct: 179 EGRRNIVVSRRKLIEITREQQKKQLLAEIEPGQVRM---GTVKNIADFGAFVDL-GGIDG 234

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 544
               +++       PS M  +   ++  ++       +I L    K     E+  D   +
Sbjct: 235 LLHITDMSWGRINHPSDMVKIDDQIEVMVLHVDKDREKIALGLKQKSASPWENVADKYPV 294

Query: 545 GSLVSG-VVDVVTPNAVV---------VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 594
           G+ V G VV+V++  A V         V++    ++K      H ++ ++ +  ++ V+ 
Sbjct: 295 GTRVMGEVVNVMSYGAFVKLEEGIEGLVHISEMSWTK---RINHPSELVQISDKIEVVV- 350

Query: 595 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
                   L ++ E   + L  K +  N   Q+   A    P +++ G V N+   G F+
Sbjct: 351 --------LGINKEKQEISLGMKQTQTNPWDQV---AGKYPPGTMIEGTVRNLTNYGAFI 399

Query: 655 RFLGRLTGFAPRSKAVDG--QRADLSKTYYVG---------QSVRSNILDVNSETGRITL 703
                        + +DG    +D+S T  +G         Q +   +L+V+ E  RI L
Sbjct: 400 EI----------EEGIDGLLHISDMSWTRKIGHPNELLEKGQRLSCQVLNVDQERKRIAL 449

Query: 704 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 763
            LKQ               L E+       +++  ++           V++GKV +  +F
Sbjct: 450 GLKQ---------------LREDPWETDIPNRYEPND-----------VVKGKVTKLTNF 483

Query: 764 GVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 814
           GV V  E    + G +   +LA   V+S       G  I+  IL V + ER + LS K
Sbjct: 484 GVFVELE--PGLEGLLHISELADHKVDSPEEVVKVGDDIEVKILRVDRGERKIGLSRK 539



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 79/143 (55%), Gaps = 15/143 (10%)

Query: 1284 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1343
            S+++D Y++S E E  I K+  GR   V    K +E+T          Q +   L+ +  
Sbjct: 160  SDIAD-YIDS-EIECMILKIDEGRRNIVVSRRKLIEIT--------REQQKKQLLAEIEP 209

Query: 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1403
            G + +G +K +  +G F+ +   +  GL H++++S   +++   + +  ++++V +L VD
Sbjct: 210  GQVRMGTVKNIADFGAFVDLGGID--GLLHITDMSWGRINHPSDMVKIDDQIEVMVLHVD 267

Query: 1404 KEKRRISLGMK---SSYFKNDAD 1423
            K++ +I+LG+K   +S ++N AD
Sbjct: 268  KDREKIALGLKQKSASPWENVAD 290


>gi|359425923|ref|ZP_09217013.1| 30S ribosomal protein S1 [Gordonia amarae NBRC 15530]
 gi|358238782|dbj|GAB06595.1| 30S ribosomal protein S1 [Gordonia amarae NBRC 15530]
          Length = 491

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  V-DEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  +E   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELAERHVEVPDQVVSVGDDAMV 346

Query: 798 AILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|116670612|ref|YP_831545.1| 30S ribosomal protein S1 [Arthrobacter sp. FB24]
 gi|116610721|gb|ABK03445.1| SSU ribosomal protein S1P [Arthrobacter sp. FB24]
          Length = 491

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 191/420 (45%), Gaps = 64/420 (15%)

Query: 1019 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1068
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKE 97

Query: 520 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 634
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 754
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 755 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 809
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 810 DLSLK 814
            LSLK
Sbjct: 362 SLSLK 366



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LEKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLE 267

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDLDRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
             SEL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 325 HISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|302336104|ref|YP_003801311.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
 gi|301319944|gb|ADK68431.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
          Length = 392

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 178/385 (46%), Gaps = 52/385 (13%)

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1093
             D   G  VTG V K++++  LL I    K++  I   + E S  ++      +    T 
Sbjct: 29   TDFDEGDLVTGTVVKIEHDEVLLDIG--FKSEGVI--PSRELSIRKDVNPEEVVALGDTI 84

Query: 1094 HVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1151
              L + KE K  RL+L       S K  +     + ++   + G+ V G + +++ G  G
Sbjct: 85   EALVLQKEDKEGRLIL-------SKKRAEYERAWNRVEEKFNAGENVEGEVIEVVKG--G 135

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
            L++ IG  L G +            P S  D  +   L+ Y  G  ++ +V+E+ R    
Sbjct: 136  LILDIG--LRGFL------------PASLVDLRRVKDLNAY-MGTRIEARVIEMDRN--- 177

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
              +V LS R  L+       S++             +  L P M ++G V ++   G F+
Sbjct: 178  RNNVVLSRRVVLEEARKAERSEI-------------LSKLQPGMRLKGTVSSIVDFGAFV 224

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
             L   +D  + +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK    +T  
Sbjct: 225  DLG-GIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK----QTTE 279

Query: 1332 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1391
                  +    VG IV G + ++ ++G F+ +    + GL H+SE+++ HVD    +   
Sbjct: 280  DPWRTLVKKYPVGAIVEGSVTKLVTFGAFVDL-GDGVEGLVHISEMAKQHVDAPAQVCAV 338

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSS 1416
            G+ V+VK++++D ++RRISL MK++
Sbjct: 339  GDTVQVKVMEIDLDRRRISLSMKAA 363



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S ++PGM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +V
Sbjct: 202 SKLQPGMRLKGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQV 260

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +RI++  K+T       ++  Y       I  G +TK+   G FV   +GV+G
Sbjct: 261 LDVDLNRERISLGLKQTTEDPWRTLVKKYPVGA---IVEGSVTKLVTFGAFVDLGDGVEG 317

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SE+       P+ +  VG  V+ ++M      RRI+LS 
Sbjct: 318 LVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDRRRISLSM 360



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 146/369 (39%), Gaps = 58/369 (15%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G + KIE     +      +G  P  EL +     P  +  +G  ++  ++      
Sbjct: 36  LVTGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDVNPEEVVALGDTIEALVLQKEDKE 95

Query: 523 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
            R+ LS     +     RV E      G  V G V  V    +++ +  +G+    +P  
Sbjct: 96  GRLILSKKRAEYERAWNRVEEK--FNAGENVEGEVIEVVKGGLILDIGLRGF----LPA- 148

Query: 578 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 636
            L D L     + + +    E  +++ +D   +N++LS +  L  + +   S+  S + P
Sbjct: 149 SLVD-LRRVKDLNAYMGTRIEA-RVIEMDRNRNNVVLSRRVVLEEARKAERSEILSKLQP 206

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              + G V +I++ G FV  LG + G    S+         S+   VGQ V   +LDV+ 
Sbjct: 207 GMRLKGTVSSIVDFGAFVD-LGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDL 265

Query: 697 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVI 753
              RI+L LKQ+                              +E  W   V+ + +G+++
Sbjct: 266 NRERISLGLKQT------------------------------TEDPWRTLVKKYPVGAIV 295

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAE 806
           EG V +   FG  V   +   V G +   ++A   V++       G  +Q  ++++    
Sbjct: 296 EGSVTKLVTFGAFVDLGDG--VEGLVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDR 353

Query: 807 RLVDLSLKT 815
           R + LS+K 
Sbjct: 354 RRISLSMKA 362


>gi|376284650|ref|YP_005157860.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 31A]
 gi|371578165|gb|AEX41833.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 31A]
          Length = 506

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 54   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 107

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 108  VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 158

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +   DP  G               Q ++ K++E+ +      +
Sbjct: 159  DIGLRGFLPASLVEMRRVRDLDPYIG---------------QQIEAKIIELDKQRN---N 200

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 201  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 247

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 248  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 301

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 302  WRVFARTHAVGQIVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGD 360

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +  VK++ +D E+RRISL +K +
Sbjct: 361  EAMVKVIDIDLERRRISLSLKQA 383



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 220 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 277

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 278 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGRVTKLVPFGAFVRVEEG 334

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 335 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 380



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 54  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 113

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 114 KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 169

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 170 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 221

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 222 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 275

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 276 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGRVTKLVPFGAFVR 330

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 331 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 385

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 386 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 425


>gi|441510773|ref|ZP_20992675.1| 30S ribosomal protein S1 [Gordonia aichiensis NBRC 108223]
 gi|441445109|dbj|GAC50636.1| 30S ribosomal protein S1 [Gordonia aichiensis NBRC 108223]
          Length = 487

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VDD-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  ++   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDDG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 798 AILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.8 bits (112), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 31/354 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDDGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|38233738|ref|NP_939505.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae NCTC 13129]
 gi|419860721|ref|ZP_14383362.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae bv. intermedius
            str. NCTC 5011]
 gi|38199999|emb|CAE49668.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae]
 gi|387983115|gb|EIK56614.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae bv. intermedius
            str. NCTC 5011]
          Length = 486

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 138

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +   DP  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLDPYIG---------------QQIEAKIIELDKQRN---N 180

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 282  WRVFARTHAVGQIVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGD 340

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +  VK++ +D E+RRISL +K +
Sbjct: 341  EAMVKVIDIDLERRRISLSLKQA 363



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGRVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 360



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 162/402 (40%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP-- 489
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P  
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 490 ----RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
               R    LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGRVTKLVPFGAFVR 310

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|359778625|ref|ZP_09281888.1| 30S ribosomal protein S1 [Arthrobacter globiformis NBRC 12137]
 gi|359304084|dbj|GAB15717.1| 30S ribosomal protein S1 [Arthrobacter globiformis NBRC 12137]
          Length = 491

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 191/420 (45%), Gaps = 64/420 (15%)

Query: 1019 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1068
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFAGTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LEKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLE 267

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDLDRERVSLSLKATQEDPWQTFAGTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
             SEL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 325 HISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 146/365 (40%), Gaps = 46/365 (12%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKE 97

Query: 520 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 634
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 754
           + +  R++LSLK +       +F   H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFAGTHAL--------------------------GQVVP 301

Query: 755 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 809
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 810 DLSLK 814
            LSLK
Sbjct: 362 SLSLK 366



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  Q     A       VV G V  ++  G FVR    + 
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF---AGTHALGQVVPGKVTKLVPFGAFVRVEDGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|220912560|ref|YP_002487869.1| 30S ribosomal protein S1 [Arthrobacter chlorophenolicus A6]
 gi|219859438|gb|ACL39780.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
          Length = 491

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 191/420 (45%), Gaps = 64/420 (15%)

Query: 1019 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1068
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKE 97

Query: 520 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 634
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 754
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 755 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 809
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 810 DLSLK 814
            LSLK
Sbjct: 362 SLSLK 366



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LEKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLE 267

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDLDRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
             SEL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 325 HISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 47.0 bits (110), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|377567051|ref|ZP_09796296.1| 30S ribosomal protein S1 [Gordonia sputi NBRC 100414]
 gi|377525785|dbj|GAB41461.1| 30S ribosomal protein S1 [Gordonia sputi NBRC 100414]
          Length = 489

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VDD-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  ++   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDDG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 798 AILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.8 bits (112), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 31/354 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDDGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|385241460|ref|YP_005809300.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/11023]
 gi|296438403|gb|ADH20556.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/11023]
 gi|440534832|emb|CCP60342.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/Bour]
          Length = 569

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K        + E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIE----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1434
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 394
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 395 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 451
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 512 KCRIMSSIPASRRINLSF 529
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.0 bits (97), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 425
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 539
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 654 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471


>gi|452959839|gb|EME65170.1| 30S ribosomal protein S1 [Amycolatopsis decaplanina DSM 44594]
          Length = 499

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 185/411 (45%), Gaps = 64/411 (15%)

Query: 1017 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1066
            P  + +++IGS+  F    D +I     G  V G + KVD +  LL I       + ++ 
Sbjct: 15   PQQVAINDIGSEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRE 74

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              +    +P+E+        +G  V   VL   KE K  RL+L   +        + +  
Sbjct: 75   LSIKHDVDPAEV------VTVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWG 121

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 122  TIEELKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 175

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS R+ L+   S   S+             
Sbjct: 176  -----------LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF------------ 209

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L+   + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 210  -LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 267

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E 
Sbjct: 268  EVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE 322

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+E HV+  E + +    V VK++ +D E+RRISL +K +
Sbjct: 323  -GIEGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQA 372



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 52/369 (14%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 41  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQK 100

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 101 EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP 156

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 157 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 212

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 213 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 271

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 272 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 304

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSVIQAAILDVAKA 805
            GKV +   FG  V  EE   + G +   +LA   VE        +G V+   ++D+   
Sbjct: 305 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEIPEQVVQVNGDVM-VKVIDIDLE 361

Query: 806 ERLVDLSLK 814
            R + LSLK
Sbjct: 362 RRRISLSLK 370



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 148/353 (41%), Gaps = 31/353 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKED 102

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
            G    S+  +       +   V   V   ++D++ E  RI+LSLKQ+    T
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQANEGVT 377


>gi|451336997|ref|ZP_21907548.1| SSU ribosomal protein S1p [Amycolatopsis azurea DSM 43854]
 gi|449420339|gb|EMD25826.1| SSU ribosomal protein S1p [Amycolatopsis azurea DSM 43854]
          Length = 499

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 185/411 (45%), Gaps = 64/411 (15%)

Query: 1017 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1066
            P  + +++IGS+  F    D +I     G  V G + KVD +  LL I       + ++ 
Sbjct: 15   PQQVAINDIGSEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRE 74

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              +    +P+E+        +G  V   VL   KE K  RL+L   +        + +  
Sbjct: 75   LSIKHDVDPAEV------VTVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWG 121

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 122  TIEELKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 175

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS R+ L+   S   S+             
Sbjct: 176  -----------LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF------------ 209

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L+   + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 210  -LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 267

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E 
Sbjct: 268  EVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE 322

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL+E HV+  E + +    V VK++ +D E+RRISL +K +
Sbjct: 323  -GIEGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQA 372



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 52/369 (14%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 41  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQK 100

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 101 EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP 156

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 157 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 212

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 213 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 271

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 272 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 304

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSVIQAAILDVAKA 805
            GKV +   FG  V  EE   + G +   +LA   VE        +G V+   ++D+   
Sbjct: 305 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEIPEQVVQVNGDVM-VKVIDIDLE 361

Query: 806 ERLVDLSLK 814
            R + LSLK
Sbjct: 362 RRRISLSLK 370



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 148/353 (41%), Gaps = 31/353 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKED 102

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
            G    S+  +       +   V   V   ++D++ E  RI+LSLKQ+    T
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQANEGVT 377


>gi|76788812|ref|YP_327898.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/HAR-13]
 gi|255310900|ref|ZP_05353470.1| 30S ribosomal protein S1 [Chlamydia trachomatis 6276]
 gi|255317200|ref|ZP_05358446.1| 30S ribosomal protein S1 [Chlamydia trachomatis 6276s]
 gi|376282107|ref|YP_005155933.1| 30S ribosomal protein S1P [Chlamydia trachomatis A2497]
 gi|385239610|ref|YP_005807452.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9768]
 gi|385240530|ref|YP_005808371.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11222]
 gi|385242386|ref|YP_005810225.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9301]
 gi|385245996|ref|YP_005814818.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11074]
 gi|385269750|ref|YP_005812910.1| SSU ribosomal protein S1P [Chlamydia trachomatis A2497]
 gi|76167342|gb|AAX50350.1| SSU ribosomal protein S1P [Chlamydia trachomatis A/HAR-13]
 gi|296435615|gb|ADH17789.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9768]
 gi|296436538|gb|ADH18708.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11222]
 gi|296437475|gb|ADH19636.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11074]
 gi|297139974|gb|ADH96732.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9301]
 gi|347974890|gb|AEP34911.1| SSU ribosomal protein S1P [Chlamydia trachomatis A2497]
 gi|371908137|emb|CAX08757.1| SSU ribosomal protein S1P [Chlamydia trachomatis A2497]
 gi|438690015|emb|CCP49272.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/7249]
 gi|438691099|emb|CCP48373.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/5291]
 gi|438692472|emb|CCP47474.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/363]
 gi|440533044|emb|CCP58554.1| 30S ribosomal protein S1 [Chlamydia trachomatis Ia/SotonIa1]
 gi|440533938|emb|CCP59448.1| 30S ribosomal protein S1 [Chlamydia trachomatis Ia/SotonIa3]
          Length = 569

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K        + E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIE----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1434
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 394
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 395 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 451
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 512 KCRIMSSIPASRRINLSF 529
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 425
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 539
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 654 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471


>gi|325963167|ref|YP_004241073.1| 30S ribosomal protein S1 [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469254|gb|ADX72939.1| SSU ribosomal protein S1P [Arthrobacter phenanthrenivorans Sphe3]
          Length = 492

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 191/420 (45%), Gaps = 64/420 (15%)

Query: 1019 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1068
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKE 97

Query: 520 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 634
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 754
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 755 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 809
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 810 DLSLK 814
            LSLK
Sbjct: 362 SLSLK 366



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LEKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLE 267

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDLDRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
             SEL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 325 HISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|269956314|ref|YP_003326103.1| RNA binding S1 domain-containing protein [Xylanimonas cellulosilytica
            DSM 15894]
 gi|269304995|gb|ACZ30545.1| RNA binding S1 domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 490

 Score = 84.0 bits (206), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 186/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IG+ + L    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 12   VAINDIGTAEDLLAAIDATIKNFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 71

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +PSE+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 72   KHDVDPSEV------VSLGDVVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 118

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 119  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 169

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+    T S   ST + T         
Sbjct: 170  --------IEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT--------- 206

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 207  -LQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 264

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  +
Sbjct: 265  DVDFDRERVSLSLKAT-----QEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVED-GI 318

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+  HV+  E +   G++V VK++ +D E+RRISL +K +
Sbjct: 319  EGLVHISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQA 366



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 207 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 265

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 266 VDFDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 322

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +     P  +  VGQ V  +++      RRI+LS 
Sbjct: 323 HISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSL 363



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   +G  +   VL  + 
Sbjct: 37  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSLGDVVEALVLQKED 96

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 153 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 208

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 209 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 262

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 263 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 318

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VGQ V   ++D++ E  RI+LSLKQ+
Sbjct: 319 EGLVHISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQA 366


>gi|384566732|ref|ZP_10013836.1| ribosomal protein S1 [Saccharomonospora glauca K62]
 gi|384522586|gb|EIE99781.1| ribosomal protein S1 [Saccharomonospora glauca K62]
          Length = 491

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 41   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VAVGDEVEAL 94

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 95   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEPVRGTVIEVVKG--GLIL 145

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 146  DIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKN---RNN 187

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L+   + +G V ++ + G F+ L 
Sbjct: 188  VVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG 234

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q  
Sbjct: 235  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-- 291

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G 
Sbjct: 292  ---FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGG 347

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +V VK++ +D E+RRISL +K +
Sbjct: 348  EVMVKVIDIDLERRRISLSLKQA 370



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 156/393 (39%), Gaps = 46/393 (11%)

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           ++K++ V    T      AI  +     D  I  G I K+++    +      +G  P  
Sbjct: 12  QAKQVAVNDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSR 71

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLV 548
           EL +    +P+ +  VG  V+  ++       R+ LS      +    + ++L +    V
Sbjct: 72  ELSIKHDVDPAEVVAVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPV 131

Query: 549 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDN 607
            G V  V    +++ +  +G+    +P    A  +E   V       G E + +++ LD 
Sbjct: 132 RGTVIEVVKGGLILDIGLRGF----LP----ASLVEMRRVRDLQPYVGRELEAKIIELDK 183

Query: 608 ESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 666
             +N++LS +  L  +  ++ S+  + +    V  G V +I+  G FV  LG + G    
Sbjct: 184 NRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHV 242

Query: 667 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 726
           S+         S+   VGQ V   +LDV+ +  R++LSLK +        F + H     
Sbjct: 243 SELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----- 296

Query: 727 KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----H 781
                                 IG ++ GKV +   FG  V  EE  +    I+     H
Sbjct: 297 ---------------------AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERH 335

Query: 782 HQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
            ++    V+ G  +   ++D+    R + LSLK
Sbjct: 336 VEIPEQVVQVGGEVMVKVIDIDLERRRISLSLK 368



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKED 100

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 717
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    S DA F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGYSPDAEF 380


>gi|375293001|ref|YP_005127540.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae INCA 402]
 gi|376293166|ref|YP_005164840.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC02]
 gi|371582672|gb|AEX46338.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae INCA 402]
 gi|372110489|gb|AEX76549.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC02]
          Length = 513

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 61   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 114

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 115  VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 165

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +   DP  G               Q ++ K++E+ +      +
Sbjct: 166  DIGLRGFLPASLVEMRRVRDLDPYIG---------------QQIEAKIIELDKQRN---N 207

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 208  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 254

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 255  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 308

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 309  WRVFARTHAVGQIVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGD 367

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +  VK++ +D E+RRISL +K +
Sbjct: 368  EAMVKVIDIDLERRRISLSLKQA 390



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 227 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 284

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 285 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGRVTKLVPFGAFVRVEEG 341

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 342 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 387



 Score = 48.5 bits (114), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 61  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 120

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 121 KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 176

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 177 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 228

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 229 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 282

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 655
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 283 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGRVTKLVPFGAFVR 337

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 338 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 392

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 393 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 432


>gi|119962586|ref|YP_947812.1| 30S ribosomal protein S1 [Arthrobacter aurescens TC1]
 gi|403527278|ref|YP_006662165.1| 30S ribosomal protein S1 [Arthrobacter sp. Rue61a]
 gi|119949445|gb|ABM08356.1| ribosomal protein S1 [Arthrobacter aurescens TC1]
 gi|403229705|gb|AFR29127.1| 30S ribosomal protein S1 [Arthrobacter sp. Rue61a]
          Length = 491

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 191/420 (45%), Gaps = 64/420 (15%)

Query: 1019 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1068
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1069 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VAVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVAVGDQVEALVLTKE 97

Query: 520 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 634
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 754
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 755 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 809
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 810 DLSLK 814
            LSLK
Sbjct: 362 SLSLK 366



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LEKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLE 267

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDLDRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
             SEL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 325 HISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVAVGDQVEALVLTKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|348171102|ref|ZP_08877996.1| 30S ribosomal protein S1 [Saccharopolyspora spinosa NRRL 18395]
          Length = 499

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 129/268 (48%), Gaps = 39/268 (14%)

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
            GGL++ IG   +      E++ +    P  G +               ++ K++E+ +  
Sbjct: 143  GGLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKNR 187

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
                +V LS R+ L+   S   S+              +  L    + +G V ++ + G 
Sbjct: 188  N---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKGQVRKGVVSSIVNFGA 231

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +    
Sbjct: 232  FVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDP 290

Query: 1330 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
              Q      +  H +G IV G++ ++  +G F+ + +  + GL H+SEL+E HV+  E +
Sbjct: 291  WRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQV 344

Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             + G++V +K++ +D E+RRISL +K +
Sbjct: 345  VQVGDEVMIKVIDIDLERRRISLSLKQA 372



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 145/366 (39%), Gaps = 46/366 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 41  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVLQK 100

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 101 EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGFLPASL- 159

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 160 -------VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 212

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 213 LQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 271

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 272 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 304

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  +E  +    I+     H ++    V+ G  +   ++D+    R 
Sbjct: 305 PGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEVMIKVIDIDLERRR 364

Query: 809 VDLSLK 814
           + LSLK
Sbjct: 365 ISLSLK 370



 Score = 48.1 bits (113), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVLQKED 102

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 214

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 324

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 717
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    S D+ F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVGDEVMIKVIDIDLERRRISLSLKQANEGFSPDSEF 382


>gi|108799971|ref|YP_640168.1| 30S ribosomal protein S1 [Mycobacterium sp. MCS]
 gi|119869083|ref|YP_939035.1| 30S ribosomal protein S1 [Mycobacterium sp. KMS]
 gi|126435599|ref|YP_001071290.1| 30S ribosomal protein S1 [Mycobacterium sp. JLS]
 gi|108770390|gb|ABG09112.1| SSU ribosomal protein S1P [Mycobacterium sp. MCS]
 gi|119695172|gb|ABL92245.1| SSU ribosomal protein S1P [Mycobacterium sp. KMS]
 gi|126235399|gb|ABN98799.1| SSU ribosomal protein S1P [Mycobacterium sp. JLS]
          Length = 479

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 173/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 36   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VSVGDEVEAL 89

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 90   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEAVKGTVIEVVKG--GLIL 140

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 141  DIGLRGFLPASLVEMRRVRDLQPYIGKE---------------IEAKIIELDKNRN---N 182

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    I +G V ++ + G F+ L 
Sbjct: 183  VVLSRRAWLEQTQSEVRSEF-------------LNQLQKGAIRKGVVSSIVNFGAFVDLG 229

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 230  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKAT-----QEDP 283

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
              + +  H +G IV G++ ++  +G F+ +E   + GL H+SELSE HV+  + + + G+
Sbjct: 284  WRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELSERHVEVPDQVVQVGD 342

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
               VK++ +D E+RRISL +K +
Sbjct: 343  DAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 150/376 (39%), Gaps = 46/376 (12%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 150 ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMD 268

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 758 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 813 LKTVFIDRFREANSNR 828
           LK    D   E + ++
Sbjct: 362 LKQANEDYTEEFDPSK 377



 Score = 47.4 bits (111), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407


>gi|400974618|ref|ZP_10801849.1| 30S ribosomal protein S1 [Salinibacterium sp. PAMC 21357]
          Length = 488

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  + G V K+D +  LL +       + ++   +    +P+E+       ++G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEV------VNVGDTVEAL 91

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1153
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVE------LIKESDGVVTGSVIEVVKG--GLI 141

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V IG   +      EL+ +    P  G               Q ++ K+LE+ +      
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG---------------QEIEAKILELDKNRN--- 183

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
            +V LS R+ L+   S + +               + +L+   + +G V ++ + G F+ L
Sbjct: 184  NVVLSRRALLEETQSASRTSF-------------LNNLAKGQVRKGVVSSIVNFGAFVDL 230

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  V +S LS  ++E   +   +G+ V   +L V+   +RV ++LK +      + 
Sbjct: 231  G-GVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLERERVSLSLKAT-----QED 284

Query: 1334 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
                 +  H +G +  G++ ++  +G F+ + +  + GL H+SELS  HV+  E +   G
Sbjct: 285  PWQVFARTHAIGQVAPGKVTKLVPFGAFVRVAD-GIEGLVHISELSGKHVELAEQVVSVG 343

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            ++V VK++ +D E+RRISL +K +
Sbjct: 344  DEVFVKVIDIDLERRRISLSLKQA 367



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 155/349 (44%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +++G V+ +D    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEVVNVGDTVEALVLQKED 97

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E +D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVELIKE-SDGVVT-GSVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R S  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEETQSASRTSFLNNLA 209

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D E   + LS K +  +  Q      +  H    V  G V  ++  G FVR    +
Sbjct: 264 ILEVDLERERVSLSLKATQEDPWQVF----ARTHAIGQVAPGKVTKLVPFGAFVRVADGI 319

Query: 661 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+ + G+  +L+ +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGDEVFVKVIDIDLERRRISLSLKQA 367



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 149/362 (41%), Gaps = 40/362 (11%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  +  G + KI++    +      +G  P  EL +    +P+ + +VG  V+  ++   
Sbjct: 37  DGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEVVNVGDTVEALVLQKE 96

Query: 520 PASRRINLSFMMKPTRVSEDD--LVKLG-SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS        +  D  L+K    +V+G V  V    ++V +  +G+    +P 
Sbjct: 97  DKEGRLILSKKRAQYERAWGDVELIKESDGVVTGSVIEVVKGGLIVDIGLRGF----LP- 151

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SH 633
              A  +E   V       G E + ++L LD   +N++LS + +L+   Q     +  ++
Sbjct: 152 ---ASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLS-RRALLEETQSASRTSFLNN 207

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   IL+
Sbjct: 208 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILE 266

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI-IGSV 752
           V+ E  R++LSLK +        F + H       A+ Q +    ++L     F+ +   
Sbjct: 267 VDLERERVSLSLKATQEDPWQV-FARTH-------AIGQVAPGKVTKLVPFGAFVRVADG 318

Query: 753 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
           IEG VH S   G                H +LA   V  G  +   ++D+    R + LS
Sbjct: 319 IEGLVHISELSG---------------KHVELAEQVVSVGDEVFVKVIDIDLERRRISLS 363

Query: 813 LK 814
           LK
Sbjct: 364 LK 365


>gi|354582632|ref|ZP_09001533.1| RNA binding S1 domain protein [Paenibacillus lactis 154]
 gi|353198924|gb|EHB64390.1| RNA binding S1 domain protein [Paenibacillus lactis 154]
          Length = 407

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 170/383 (44%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
            G  V G + K+++  A ++I       + + +      +L        +G+ V   V+SI
Sbjct: 28   GDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRE--LSSVQLDNASDAVQVGQEVECKVVSI 85

Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1156
            N +K+ L L         S + +D  N  D ++      D+    ++ ++ G  GLV  +
Sbjct: 86   NDDKESLVL---------SKRAIDAENAWDELEKHFEAQDVFEVTVADVVKG--GLVADV 134

Query: 1157 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1216
            G   +               P S  +    +  S Y +G+ ++ KV E+ R       V 
Sbjct: 135  GARGF--------------IPASMVERHFVEDFSDY-KGRTLRVKVKELDRE---NNKVI 176

Query: 1217 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1276
            LS +  L+     N   +             + +L    +++G V+ +T  G F+ +   
Sbjct: 177  LSQKDVLEEEFEANKQKV-------------MAELKEGQVLEGTVQRLTQFGAFVDVG-G 222

Query: 1277 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS---RTASQS 1333
            +D  V +S ++  +V+ P      G  V  +VL V+P   ++ +++K +      TA + 
Sbjct: 223  VDGLVHVSEIAWNHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAAGPGPWETAGE- 281

Query: 1334 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                    H GDIV G +KR+ S+G F+ +    + GL H+S++S  H+   + + + G+
Sbjct: 282  ------QFHTGDIVTGVVKRLVSFGAFVEL-APGVEGLVHISQISHKHIGTPQEVLKEGQ 334

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +V+VK+L ++  ++R+SL +K +
Sbjct: 335  EVQVKVLDINPSEQRVSLSIKET 357



 Score = 47.8 bits (112), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           +++K G V++G V  +  FGA V   GGV  L  +  ++   + KP      G ++  +V
Sbjct: 196 AELKEGQVLEGTVQRLTQFGAFVDV-GGVDGLVHVSEIAWNHVDKPSDVLSEGDQVRVKV 254

Query: 429 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGV 484
           L V  ++  ++     +  K A    +  A ++     I  G + ++   G FV    GV
Sbjct: 255 LKVDPEKGKIS-----LSIKAAGPGPWETAGEQFHTGDIVTGVVKRLVSFGAFVELAPGV 309

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           +G    S++       P  +   GQ V+ +++   P+ +R++LS 
Sbjct: 310 EGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINPSEQRVSLSI 354



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 315 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 374
           V +S++A   V K      EG  VRV++L     +G  +  +KA+              G
Sbjct: 227 VHVSEIAWNHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAAGPGPWETAGEQFHTG 286

Query: 375 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK-- 432
            +V G V  + SFGA V+   GV+ L  +  +S   I  P +  K G E+  +VL +   
Sbjct: 287 DIVTGVVKRLVSFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINPS 346

Query: 433 SKRITVTHKKT 443
            +R++++ K+T
Sbjct: 347 EQRVSLSIKET 357



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 34/199 (17%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            + EG ++ G + ++     G  V +G  + G VH +E+    V  P         D LS 
Sbjct: 198  LKEGQVLEGTVQRLTQF--GAFVDVG-GVDGLVHVSEIAWNHVDKP--------SDVLS- 245

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
              EG  V+ KVL++    +G   + LS++++                  PG      E  
Sbjct: 246  --EGDQVRVKVLKVDPE-KG--KISLSIKAA-----------------GPGPWETAGEQF 283

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
                IV G VK + S G F+ L+  ++  V +S +S  ++ +P++    G+ V  +VL +
Sbjct: 284  HTGDIVTGVVKRLVSFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDI 343

Query: 1312 EPLSKRVEVTLKTSDSRTA 1330
             P  +RV +++K ++   A
Sbjct: 344  NPSEQRVSLSIKETEEAPA 362



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 141/357 (39%), Gaps = 43/357 (12%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K G  VKG ++ ++   A V        + P+  +S  ++       +VG E+  +V+ 
Sbjct: 25  LKKGDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRELSSVQLDNASDAVQVGQEVECKVVS 84

Query: 431 VKSKRITVTHKKTLVKSKLAI--------LSSYAEATDRLITHGWITKIEKHGCFVRFYN 482
           +         K++LV SK AI        L  + EA D  +    +  + K G       
Sbjct: 85  IND------DKESLVLSKRAIDAENAWDELEKHFEAQD--VFEVTVADVVKGGLVADV-- 134

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPT 534
           G +GF P S +      E  S Y  G+ ++ ++      + ++ LS        F     
Sbjct: 135 GARGFIPASMVERH-FVEDFSDYK-GRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQ 192

Query: 535 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 594
           +V  +  +K G ++ G V  +T     V V   G   G +    +A    H      V+ 
Sbjct: 193 KVMAE--LKEGQVLEGTVQRLTQFGAFVDV---GGVDGLVHVSEIA--WNHVDKPSDVLS 245

Query: 595 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETG 651
            G +   ++L +D E   + LS     I +A   P + +    H   +V G V  ++  G
Sbjct: 246 EGDQVRVKVLKVDPEKGKISLS-----IKAAGPGPWETAGEQFHTGDIVTGVVKRLVSFG 300

Query: 652 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            FV     + G    S+          +    GQ V+  +LD+N    R++LS+K++
Sbjct: 301 AFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINPSEQRVSLSIKET 357



 Score = 41.2 bits (95), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 1/108 (0%)

Query: 1319 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1378
            E T     +   SQ +++ + +L  GD V G I ++E    +++I      G+  V ELS
Sbjct: 3    EETRNQESAEMQSQEQLDQIVSLKKGDTVKGTIVKLEDNQAYVSI-GYKYDGVIPVRELS 61

Query: 1379 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
               +DN     + G++V+ K++ ++ +K  + L  ++   +N  D L+
Sbjct: 62   SVQLDNASDAVQVGQEVECKVVSINDDKESLVLSKRAIDAENAWDELE 109


>gi|377809630|ref|YP_005004851.1| 30S ribosomal protein S1 [Pediococcus claussenii ATCC BAA-344]
 gi|361056371|gb|AEV95175.1| 30S ribosomal protein S1 [Pediococcus claussenii ATCC BAA-344]
          Length = 405

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 40/305 (13%)

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
            GGLVV  G  + G +  + ++N  V++            LS Y EG+ +K K++EI  T 
Sbjct: 130  GGLVVDAG--VRGFIPASMIENRFVNN------------LSAY-EGKTLKVKIIEIDAT- 173

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
                 + LS +  L+              +   K  E +  +    IV+G V  +T+ G 
Sbjct: 174  --KNRLILSHKDVLNE-------------ERAAKREEVLNSIHEGDIVEGKVARLTNFGA 218

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            FI L   +D  V +S +S   V  PE    +G+ V  +VLSV+P   R+ +++K + +  
Sbjct: 219  FIDLG-GMDGLVHISEISYERVNKPEDVLKVGEDVKVKVLSVDPERNRISLSIKQTLAGP 277

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
                E    +   VG ++ G++KR+  +G F+ +    + GL H+S++S  H+     + 
Sbjct: 278  WDDIE----TKAPVGAVLDGKVKRLTDFGAFVEV-FPGVEGLVHISQISHKHIATPGDVL 332

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE---SDEAIEEVGSYNRS 1446
            ++GE VKVK+L V  E+ R++L +K+       DN   S+ E    +++A EE   +   
Sbjct: 333  KSGEDVKVKVLDVRPEEHRLALSIKALEEAPKGDNTSSSNNESVNIANDAPEEESGFTLG 392

Query: 1447 SLLEN 1451
             L+ N
Sbjct: 393  DLIGN 397



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +  G +V+GKV  + +FGA +   GG+  L  +  +S   + KP    KVG ++  +VL 
Sbjct: 200 IHEGDIVEGKVARLTNFGAFIDL-GGMDGLVHISEISYERVNKPEDVLKVGEDVKVKVLS 258

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V  +  RI+++ K+TL      I     +A    +  G + ++   G FV  + GV+G  
Sbjct: 259 VDPERNRISLSIKQTLAGPWDDI---ETKAPVGAVLDGKVKRLTDFGAFVEVFPGVEGLV 315

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             S++       P  +   G+ VK +++   P   R+ LS 
Sbjct: 316 HISQISHKHIATPGDVLKSGEDVKVKVLDVRPEEHRLALSI 356



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 139/356 (39%), Gaps = 67/356 (18%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP----------ASRRINLSFMMK 532
           GV+G  P  EL      + + +  +G  ++  ++S I           + +R+    + K
Sbjct: 49  GVEGVVPLRELSNKHIDDINEVAKIGDELELVVISKIGNDKEGGSYLLSKKRLEAQAIWK 108

Query: 533 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 592
             +  ED+   L   V+ VV       +VV    +G+   ++      ++L         
Sbjct: 109 DIQAKEDNNETLEVPVTQVV----KGGLVVDAGVRGFIPASMIENRFVNNL--------- 155

Query: 593 IKPGYEFDQLLV----LDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNI 647
               YE   L V    +D   + L+LS K  L    A +     + IH   +V G V  +
Sbjct: 156 --SAYEGKTLKVKIIEIDATKNRLILSHKDVLNEERAAKREEVLNSIHEGDIVEGKVARL 213

Query: 648 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
              G F+  LG + G    S+    +         VG+ V+  +L V+ E  RI+LS+KQ
Sbjct: 214 TNFGAFID-LGGMDGLVHISEISYERVNKPEDVLKVGEDVKVKVLSVDPERNRISLSIKQ 272

Query: 708 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 767
           +     D         +E K                     +G+V++GKV    DFG  V
Sbjct: 273 TLAGPWDD--------IETKAP-------------------VGAVLDGKVKRLTDFGAFV 305

Query: 768 SFEEHSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 816
             E    V G      I+H  +A  G  ++SG  ++  +LDV   E  + LS+K +
Sbjct: 306 --EVFPGVEGLVHISQISHKHIATPGDVLKSGEDVKVKVLDVRPEEHRLALSIKAL 359



 Score = 47.0 bits (110), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 17/197 (8%)

Query: 244 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGL 298
           + K +  +I+ +D T   + L+    L   RA       + +  GDI  + KV R+    
Sbjct: 159 EGKTLKVKIIEIDATKNRLILSHKDVLNEERAAKREEVLNSIHEGDIV-EGKVARL-TNF 216

Query: 299 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGI 355
           G  +D+          V IS+++ E V K E   K G  V+V++L     R+   L+   
Sbjct: 217 GAFIDLGGMD----GLVHISEISYERVNKPEDVLKVGEDVKVKVLSVDPERNRISLSIKQ 272

Query: 356 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 415
             A  ++ +    +    G V+ GKV  +  FGA V+   GV+ L  +  +S   I  PG
Sbjct: 273 TLAGPWDDI---ETKAPVGAVLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPG 329

Query: 416 KKFKVGAELVFRVLGVK 432
              K G ++  +VL V+
Sbjct: 330 DVLKSGEDVKVKVLDVR 346



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 42/216 (19%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            IHEGDIV G+++++ +   G  + +G  + G VH +E+    V+ P         D L  
Sbjct: 200  IHEGDIVEGKVARLTN--FGAFIDLG-GMDGLVHISEISYERVNKP--------EDVLK- 247

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
               G+ VK KVL +         + LS++ +L G                    + IE  
Sbjct: 248  --VGEDVKVKVLSVDPE---RNRISLSIKQTLAG------------------PWDDIETK 284

Query: 1252 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            +P   ++ G VK +T  G F+ +   ++  V +S +S  ++ +P      G+ V  +VL 
Sbjct: 285  APVGAVLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPGDVLKSGEDVKVKVLD 344

Query: 1311 VEPLSKRVEVTLKT------SDSRTASQSEINNLSN 1340
            V P   R+ +++K        D+ ++S +E  N++N
Sbjct: 345  VRPEEHRLALSIKALEEAPKGDNTSSSNNESVNIAN 380



 Score = 43.9 bits (102), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 147/350 (42%), Gaps = 24/350 (6%)

Query: 369 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAEL-- 424
            DV+ G VV G+V+ +D S   IV   G GV+ + PL  +S   I    +  K+G EL  
Sbjct: 20  GDVQIGDVVTGEVLDIDDSRQLIVGIQGAGVEGVVPLRELSNKHIDDINEVAKIGDELEL 79

Query: 425 -VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
            V   +G   +  +    K  ++++       A+  +       +T++ K G  V    G
Sbjct: 80  VVISKIGNDKEGGSYLLSKKRLEAQAIWKDIQAKEDNNETLEVPVTQVVKGGLVVDA--G 137

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL 541
           V+GF P S +  +      S Y  G+ +K +I+       R+ LS   ++   R ++ + 
Sbjct: 138 VRGFIPASMIE-NRFVNNLSAYE-GKTLKVKIIEIDATKNRLILSHKDVLNEERAAKREE 195

Query: 542 V----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
           V      G +V G V  +T     + +   G   G +    ++   E     + V+K G 
Sbjct: 196 VLNSIHEGDIVEGKVARLTNFGAFIDL---GGMDGLVHISEIS--YERVNKPEDVLKVGE 250

Query: 598 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
           +   ++L +D E + + LS K +L      + + A      +V+ G V  + + G FV  
Sbjct: 251 DVKVKVLSVDPERNRISLSIKQTLAGPWDDIETKAP---VGAVLDGKVKRLTDFGAFVEV 307

Query: 657 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
              + G    S+      A        G+ V+  +LDV  E  R+ LS+K
Sbjct: 308 FPGVEGLVHISQISHKHIATPGDVLKSGEDVKVKVLDVRPEEHRLALSIK 357



 Score = 40.8 bits (94), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 1335 INNLSNLHVGDIVIGQIKRVE-SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
            IN++ ++ +GD+V G++  ++ S  L + I+   + G+  + ELS  H+D+I  + + G+
Sbjct: 16   INSVGDVQIGDVVTGEVLDIDDSRQLIVGIQGAGVEGVVPLRELSNKHIDDINEVAKIGD 75

Query: 1394 KVK-VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1438
            +++ V I K+  +K   S  +     +  A    + ++E+++E +E
Sbjct: 76   ELELVVISKIGNDKEGGSYLLSKKRLEAQAIWKDIQAKEDNNETLE 121


>gi|365824972|ref|ZP_09366932.1| 30S ribosomal protein S1 [Actinomyces graevenitzii C83]
 gi|365259160|gb|EHM89155.1| 30S ribosomal protein S1 [Actinomyces graevenitzii C83]
          Length = 487

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 184/404 (45%), Gaps = 56/404 (13%)

Query: 1020 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1073
            + V++IGS + L    D +I     G  V G V KVD +  LL I    K +  IL    
Sbjct: 14   VAVNDIGSTEELLAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIG--YKTEGVILSREL 71

Query: 1074 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1133
                  + +    +G  +   VL   KE K  RL+L   +        + +   ++    
Sbjct: 72   SIKHDVDPEEIVAVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWGQIEKIKE 124

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            E  +V G + +++ G  GL++ IG   +      E++ +    P  G +           
Sbjct: 125  EDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----------- 171

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
                ++ K++E+ +      +V LS R+ L+   S   ++              ++ L  
Sbjct: 172  ----LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LQTLQK 211

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
              +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+ 
Sbjct: 212  GQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDF 270

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
              +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL 
Sbjct: 271  DRERVSLSLKAT-----QEDPWQAFARAHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLV 324

Query: 1373 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            H+SEL++ HV+  E + + G++V VK++ +D ++RRISL +K +
Sbjct: 325  HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQA 368



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 267

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDFDRERVSLSLKATQEDPWQAFARAHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 325 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSL 365



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 145/369 (39%), Gaps = 60/369 (16%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G + K+++    +      +G     EL +    +P  +  VG  ++  ++      
Sbjct: 41  IVEGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPEEIVAVGDEIEALVLQKEDKE 100

Query: 523 RRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 574
            R+ LS           +  ++ E+D V  GS++      V    +++ +  +G+    +
Sbjct: 101 GRLLLSKKRAQYERAWGQIEKIKEEDGVVTGSVIE-----VVKGGLILDIGLRGF----L 151

Query: 575 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-AS 632
           P    A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ ++   
Sbjct: 152 P----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQ 207

Query: 633 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
            +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L
Sbjct: 208 TLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 266

Query: 693 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 752
           DV+ +  R++LSLK +      A F + H                           IG V
Sbjct: 267 DVDFDRERVSLSLKATQEDPWQA-FARAH--------------------------AIGQV 299

Query: 753 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKA 805
           + GKV +   FG  V  E+   + G +   +LA   VE        G  +   ++D+   
Sbjct: 300 VPGKVTKLVPFGAFVRVEDG--IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLD 357

Query: 806 ERLVDLSLK 814
            R + LSLK
Sbjct: 358 RRRISLSLK 366



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 151/349 (43%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPEEIVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLLLSKKRAQYERAWGQIEKIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 265 VLDVDFDRERVSLSLK-----ATQEDPWQAFARAHAIGQVVPGKVTKLVPFGAFVRVEDG 319

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+          +   VG  V   ++D++ +  RI+LSLKQ+
Sbjct: 320 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQA 368


>gi|134101930|ref|YP_001107591.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
 gi|291007060|ref|ZP_06565033.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
 gi|133914553|emb|CAM04666.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
          Length = 501

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 128/268 (47%), Gaps = 39/268 (14%)

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
            GGL++ IG   +      E++ +    P  G +               ++ K++E+ +  
Sbjct: 143  GGLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKNR 187

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
                +V LS R+ L+   S   S+              +  L    + +G V ++ + G 
Sbjct: 188  N---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKGQVRKGVVSSIVNFGA 231

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +    
Sbjct: 232  FVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDP 290

Query: 1330 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
              Q      +  H +G IV G++ ++  +G F+ + +  + GL H+SEL+E HV+  E +
Sbjct: 291  WRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQV 344

Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             + G+ V +K++ +D E+RRISL +K +
Sbjct: 345  VQVGDDVMIKVIDIDLERRRISLSLKQA 372



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 145/366 (39%), Gaps = 46/366 (12%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 41  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVLQK 100

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 101 EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGFLPASL- 159

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 160 -------VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 212

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 213 LQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 271

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 272 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 304

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 808
            GKV +   FG  V  +E  +    I+     H ++    V+ G  +   ++D+    R 
Sbjct: 305 PGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMIKVIDIDLERRR 364

Query: 809 VDLSLK 814
           + LSLK
Sbjct: 365 ISLSLK 370



 Score = 48.1 bits (113), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVLQKED 102

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 214

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 324

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 717
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T D+ F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVGDDVMIKVIDIDLERRRISLSLKQANEGFTPDSEF 382


>gi|54023865|ref|YP_118107.1| 30S ribosomal protein S1 [Nocardia farcinica IFM 10152]
 gi|54015373|dbj|BAD56743.1| putative ribosomal protein S1 [Nocardia farcinica IFM 10152]
          Length = 487

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 4    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 63

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 64   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 110

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 111  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 167

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 168  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 201

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 202  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNE 256

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 257  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 311

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 312  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 364



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 148/377 (39%), Gaps = 50/377 (13%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 24  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 83

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 84  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 143

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 144 RGFLPASL--------VEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 195

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 196 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 254

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 255 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 290

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 291 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 345

Query: 798 AILDVAKAERLVDLSLK 814
            ++D+    R + LSLK
Sbjct: 346 KVIDIDLERRRISLSLK 362



 Score = 48.1 bits (113), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 35  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 94

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 150

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 151 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 206

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 260

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 261 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 316

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+
Sbjct: 317 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 364


>gi|332670357|ref|YP_004453365.1| RNA binding S1 domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332339395|gb|AEE45978.1| RNA binding S1 domain protein [Cellulomonas fimi ATCC 484]
          Length = 510

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 187/414 (45%), Gaps = 66/414 (15%)

Query: 1016 KPS--MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            KP+   + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 28   KPATPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 87

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P E+        +G  V   VL   KE K  RL+L   +        + 
Sbjct: 88   SRELSIKHDVDPGEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQYER 134

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 135  AWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 191

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+    T S   ST + T   
Sbjct: 192  --------------IEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT--- 228

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                   L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ 
Sbjct: 229  -------LQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE 280

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ 
Sbjct: 281  VTVEVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVR 335

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E+  + GL H+SEL+  HV+  E + + G+ V VK++ +D E+RRISL +K +
Sbjct: 336  VED-GIEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQA 388



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 229 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 287

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 288 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 344

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +     P  +  VG  V  +++      RRI+LS 
Sbjct: 345 HISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSL 385



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 166/394 (42%), Gaps = 39/394 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V PG+  KVG E+   VL  + 
Sbjct: 59  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDEVEALVLQKED 118

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 119 KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 174

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 175 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 230

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 231 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 284

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 285 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 339

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS------CCSST 713
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+           
Sbjct: 340 IEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQANEGFDPASEDF 399

Query: 714 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 747
           D +        +E+         + S  +W+EGF
Sbjct: 400 DPALYGMAAEYDEQGNYKYPEGFDPSTNEWLEGF 433


>gi|84496588|ref|ZP_00995442.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649]
 gi|84383356|gb|EAP99237.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649]
          Length = 502

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 184/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IGS+  L    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 13   IAINDIGSEEDLLAAIDATIKHFNDGDIVEGIIVKVDRDEVLLDIGYKTEGVIPSRELSI 72

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 73   KHDIDPNEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 119

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 120  KVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 170

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+   S   +               ++
Sbjct: 171  --------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF-------------LK 206

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            +L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 207  ELQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGDEVTVEVL 265

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +    + +  H +G +V G++ ++  +G F+ +E+  +
Sbjct: 266  DVDMDRERVSLSLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGSFVRVED-GI 319

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HV+  E +   G  + VK++ +D E+RRISL +K +
Sbjct: 320  EGLVHISELAERHVELPEQVVTVGADIFVKVIDIDLERRRISLSLKQA 367



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 152/348 (43%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    + P +  KVG E+   VL  + 
Sbjct: 38  GDIVEGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDIDPNEVVKVGDEVEALVLQKED 97

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGTIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELQ 209

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGDEVTVE 263

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 264 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGSFVRVEDGI 319

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+  +       +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISELAERHVELPEQVVTVGADIFVKVIDIDLERRRISLSLKQA 367



 Score = 40.8 bits (94), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 135/309 (43%), Gaps = 54/309 (17%)

Query: 1040 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1090
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 112  ERAWGTIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 170

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1147
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G +S I++
Sbjct: 171  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLKELQKGQVRSGVVSSIVN 223

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
               G  V +G  + G VH +EL    +  P    + G        DE   V  +VL++  
Sbjct: 224  F--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG--------DE---VTVEVLDVDM 269

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LSL+++ +                P +H  +   +    +V G V  +   
Sbjct: 270  DRE---RVSLSLKATQE---------------DPWQHFARTHAI--GQVVPGKVTKLVPF 309

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   ++  V +S L++ +VE PE+   +G  +  +V+ ++   +R+ ++LK ++ 
Sbjct: 310  GSFVRVEDGIEGLVHISELAERHVELPEQVVTVGADIFVKVIDIDLERRRISLSLKQANE 369

Query: 1328 RTASQSEIN 1336
              A  +E +
Sbjct: 370  DGAGLTEFD 378


>gi|88856205|ref|ZP_01130865.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
 gi|88814524|gb|EAR24386.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
          Length = 488

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  + G V K+D +  LL +       + ++   +    +P+E+       ++G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEV------VNVGDTVEAL 91

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1153
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVE------LIKESDGVVTGSVIEVVKG--GLI 141

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V IG   +      EL+ +    P  G               Q ++ K+LE+ +      
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG---------------QEIEAKILELDKNRN--- 183

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
            +V LS R+ L+   S + +               + +L+   + +G V ++ + G F+ L
Sbjct: 184  NVVLSRRALLEETQSASRTSF-------------LNNLAKGQVRKGVVSSIVNFGAFVDL 230

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  V +S LS  ++E   +   +G+ V   +L V+   +RV ++LK +      + 
Sbjct: 231  G-GVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLERERVSLSLKAT-----QED 284

Query: 1334 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
                 +  H +G +  G++ ++  +G F+ + +  + GL H+SELS  HV+  E +   G
Sbjct: 285  PWQVFARTHAIGQVAPGKVTKLVPFGAFVRVAD-GIEGLVHISELSGKHVELAEQVVSVG 343

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            ++V VK++ +D E+RRISL +K +
Sbjct: 344  DEVFVKVIDIDLERRRISLSLKQA 367



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 155/349 (44%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +++G V+ +D    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEVVNVGDTVEALVLQKED 97

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E +D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVELIKE-SDGVVT-GSVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R S  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEETQSASRTSFLNNLA 209

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D E   + LS K +  +  Q      +  H    V  G V  ++  G FVR    +
Sbjct: 264 ILEVDLERERVSLSLKATQEDPWQVF----ARTHAIGQVAPGKVTKLVPFGAFVRVADGI 319

Query: 661 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+ + G+  +L+ +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGDEVFVKVIDIDLERRRISLSLKQA 367



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 149/362 (41%), Gaps = 40/362 (11%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  +  G + KI++    +      +G  P  EL +    +P+ + +VG  V+  ++   
Sbjct: 37  DGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEVVNVGDTVEALVLQKE 96

Query: 520 PASRRINLSFMMKPTRVSEDD--LVKLG-SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS        +  D  L+K    +V+G V  V    ++V +  +G+    +P 
Sbjct: 97  DKEGRLILSKKRAQYERAWGDVELIKESDGVVTGSVIEVVKGGLIVDIGLRGF----LP- 151

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SH 633
              A  +E   V       G E + ++L LD   +N++LS + +L+   Q     +  ++
Sbjct: 152 ---ASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLS-RRALLEETQSASRTSFLNN 207

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   IL+
Sbjct: 208 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILE 266

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI-IGSV 752
           V+ E  R++LSLK +        F + H       A+ Q +    ++L     F+ +   
Sbjct: 267 VDLERERVSLSLKATQEDPWQV-FARTH-------AIGQVAPGKVTKLVPFGAFVRVADG 318

Query: 753 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
           IEG VH S   G                H +LA   V  G  +   ++D+    R + LS
Sbjct: 319 IEGLVHISELSG---------------KHVELAEQVVSVGDEVFVKVIDIDLERRRISLS 363

Query: 813 LK 814
           LK
Sbjct: 364 LK 365


>gi|377556031|ref|ZP_09785754.1| 30S ribosomal protein S1 [Lactobacillus gastricus PS3]
 gi|376168769|gb|EHS87497.1| 30S ribosomal protein S1 [Lactobacillus gastricus PS3]
          Length = 409

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 95/166 (57%), Gaps = 6/166 (3%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            +L+P  +V+G V  +T+ G FI L   +D  V +S +S  +V+ P     +G+ V  +VL
Sbjct: 197  ELAPGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPADVLEVGEDVKVKVL 255

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            SV+P  +R+ +++K +        E    S    G ++ G +KR+ S+G F+ +    + 
Sbjct: 256  SVDPERERISLSIKQTLPGPWDDIE----SKAPQGTVLTGTVKRLTSFGAFVEV-FPGVE 310

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            GL H+S++S  H+     + + GE+V+VK+L V+ +K+R+ L +K+
Sbjct: 311  GLVHISQISHKHIATPADVLKVGEEVQVKVLNVEADKQRLGLSIKA 356



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 2/110 (1%)

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +++ +EP   R+ ++ K       +++       L  GD+V G++ R+ ++G FI +   
Sbjct: 164  KIVEIEPSENRLILSHKEIVQEQHAEAAAKIFGELAPGDVVEGKVARMTNFGAFIDLGGV 223

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  GL HVSE+S DHVD    +   GE VKVK+L VD E+ RISL +K +
Sbjct: 224  D--GLVHVSEISYDHVDKPADVLEVGEDVKVKVLSVDPERERISLSIKQT 271



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 19/242 (7%)

Query: 482 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 538
           +GV+G  P ++L   P  + + +  VG V+   ++S I  S + N S+++   R+     
Sbjct: 46  SGVEGIVPANQLSTKPVNDINEVVKVGDVLDLVVISKI-GSDKENGSYLLSHRRLEAMKV 104

Query: 539 -DDL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 594
            D++      G  ++  V       +VV    +G+   ++ T+H  D L           
Sbjct: 105 WDEIQAKFDNGETLTATVTQAVRGGLVVDAGVRGFVPASMITDHYVDDLNQFK------- 157

Query: 595 PGYEFDQLLVLDNESSNLLLSAKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGC 652
            G E +  +V    S N L+ +   ++    A+        + P  VV G V  +   G 
Sbjct: 158 -GQELEFKIVEIEPSENRLILSHKEIVQEQHAEAAAKIFGELAPGDVVEGKVARMTNFGA 216

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           F+  LG + G    S+         +    VG+ V+  +L V+ E  RI+LS+KQ+    
Sbjct: 217 FID-LGGVDGLVHVSEISYDHVDKPADVLEVGEDVKVKVLSVDPERERISLSIKQTLPGP 275

Query: 713 TD 714
            D
Sbjct: 276 WD 277



 Score = 48.5 bits (114), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 16/241 (6%)

Query: 396 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKL-AIL 452
           GV+   P   +++   V    +FK G EL F+++ ++    R+ ++HK+ + +    A  
Sbjct: 135 GVRGFVPASMITDH-YVDDLNQFK-GQELEFKIVEIEPSENRLILSHKEIVQEQHAEAAA 192

Query: 453 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 512
             + E     +  G + ++   G F+    GV G    SE+  D   +P+ +  VG+ VK
Sbjct: 193 KIFGELAPGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKPADVLEVGEDVK 251

Query: 513 CRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYS 570
            +++S  P   RI+LS         +D   K   G++++G V  +T     V V      
Sbjct: 252 VKVLSVDPERERISLSIKQTLPGPWDDIESKAPQGTVLTGTVKRLTSFGAFVEVFPG--V 309

Query: 571 KGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD 630
           +G +    ++   +H      V+K G E  Q+ VL+ E+    L      I + Q+ P D
Sbjct: 310 EGLVHISQISH--KHIATPADVLKVGEEV-QVKVLNVEADKQRLGLS---IKALQEAPKD 363

Query: 631 A 631
           A
Sbjct: 364 A 364


>gi|423555636|ref|ZP_17531939.1| ribosomal protein S1 [Bacillus cereus MC67]
 gi|401197040|gb|EJR03978.1| ribosomal protein S1 [Bacillus cereus MC67]
          Length = 382

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +N+  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELNQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 44.3 bits (103), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 127/294 (43%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|423408547|ref|ZP_17385696.1| ribosomal protein S1 [Bacillus cereus BAG2X1-3]
 gi|401657637|gb|EJS75145.1| ribosomal protein S1 [Bacillus cereus BAG2X1-3]
          Length = 382

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 185/417 (44%), Gaps = 64/417 (15%)

Query: 1027 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1086
            +K + +  ++ +G  VTG V KV+ +  L+ +        +  D     SEL       H
Sbjct: 6    NKEVMDSKELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVH 54

Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISK 1144
            I KA    V+ +++  +L  + L      +S + VD       +Q     G +    +  
Sbjct: 55   IEKA--SDVVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVALQEKFTSGHVFDVTVKD 112

Query: 1145 ILSGVGGLVVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1199
            I++G  GLVV +G     P     VH+ E                     + Y +G+ + 
Sbjct: 113  IVNG--GLVVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLA 150

Query: 1200 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1259
             K++E+ R       V LS ++ ++             ++   K  E I  L    +V+G
Sbjct: 151  VKIVELDRE---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEG 194

Query: 1260 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1319
             V+ +T  G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ 
Sbjct: 195  TVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRIS 253

Query: 1320 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            +++K +          N    + VGDI  G +KR+ ++G F+ I    + GL HVS+++ 
Sbjct: 254  LSIKAAQPGPWE----NVAGEIKVGDIREGVVKRLATFGAFVEI-LPGVEGLVHVSQIAN 308

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
             HV N   +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 309  RHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   ++RI+++ K          ++   +  D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKVGD--IREGVVKRLATFGAFVEILPGVEG 299

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 539
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 134/294 (45%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++  G     + ++            
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAAQPGPWENVAGEI------------ 271

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            K+ D+      +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 272  KVGDIR-----EGVVKRLATFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|330836582|ref|YP_004411223.1| RNA binding S1 domain-containing protein [Sphaerochaeta coccoides DSM
            17374]
 gi|329748485|gb|AEC01841.1| RNA binding S1 domain protein [Sphaerochaeta coccoides DSM 17374]
          Length = 571

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 93/160 (58%), Gaps = 7/160 (4%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +VQG VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  R+++++P +
Sbjct: 204  VVQGVVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGQTIELRLINIDPET 262

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            ++V ++LK       S  E     N +VGD+V   + ++ ++G FI I    + GL H+S
Sbjct: 263  QKVNLSLKHMHEDPWSSFE----KNFNVGDVVKAPVTKLTTFGAFIEIA-PGIEGLAHIS 317

Query: 1376 ELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            ELS    V+N + +   G+ V+ KIL  D +K+R+SLG+K
Sbjct: 318  ELSWTKRVNNPKDVLDVGDVVEAKILGYDLDKKRVSLGLK 357



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 154/352 (43%), Gaps = 27/352 (7%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S V  G VV+G V +  SFGA +   GG   L  +  MS   + +P    K G  +  R+
Sbjct: 197 SSVHIGDVVQGVVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQTIELRL 255

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           + +  +++++ ++ K  + +   +         D  +    +TK+   G F+    G++G
Sbjct: 256 INIDPETQKVNLSLKH-MHEDPWSSFEKNFNVGD--VVKAPVTKLTTFGAFIEIAPGIEG 312

Query: 487 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVK 543
            A  SEL        P  +  VG VV+ +I+      +R++L    + +    S DD   
Sbjct: 313 LAHISELSWTKRVNNPKDVLDVGDVVEAKILGYDLDKKRVSLGLKQLEENPWDSIDDRYP 372

Query: 544 LG-SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFD 600
           +G +L   VV +    A +      G   G     H+ D    E    M S  K G   D
Sbjct: 373 VGKTLTRPVVKITNSGAFI------GLEDGIDGFLHIDDISWTEKVRNMSSFAKEGDMVD 426

Query: 601 QLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLG 658
            ++  ++ E+  + LS K    N    L  D    +P  S + G V N+ + G FV+ LG
Sbjct: 427 VVVTRVEPENRRIRLSVKQLEDNPWNTLKKD----YPKYSSISGEVTNVTDFGVFVKVLG 482

Query: 659 RLTGFAPRSKAV--DGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            + G   +   V  D +  D + K + VG  V + ++DVN  T +++LS+K+
Sbjct: 483 GIEGLISKFHLVGPDEEYNDSVLKNFKVGDVVTAAVMDVNPSTQKLSLSIKE 534



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 42/201 (20%)

Query: 1245 LEKIEDL-------SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK- 1296
            LEK EDL       SP   V G    V   G  I L  +      +S      VE PE  
Sbjct: 100  LEKTEDLRKAAEDRSP---VLGKFVKVIKGGYEIDLGGEYRGFCPMSKADVSRVEDPESL 156

Query: 1297 -----EFPIGKLVAGRVLSV-----EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1346
                  F I K  AG  L       E L KR++   +T              S++H+GD+
Sbjct: 157  IGLSDYFIIDKFHAGTKLKSVVSRREYLEKRIKENKETF------------FSSVHIGDV 204

Query: 1347 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1406
            V G +K   S+G FI +   +  GL H++++S  HV   +   + G+ ++++++ +D E 
Sbjct: 205  VQGVVKSFTSFGAFIDLGGFD--GLLHINDMSWGHVTRPKDFVKKGQTIELRLINIDPET 262

Query: 1407 RRISLGMK-------SSYFKN 1420
            ++++L +K       SS+ KN
Sbjct: 263  QKVNLSLKHMHEDPWSSFEKN 283



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 152/368 (41%), Gaps = 40/368 (10%)

Query: 356 LKASAFEGLVFTHSD-VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV-K 413
           L  S  E  VF   D ++ G +V G VI V++    V    G K+   +P + EF+++ +
Sbjct: 15  LMESLLEHDVFKSLDEIEDGTLVTGTVIQVNNEYVFVDV--GYKSEGRIP-LDEFDVIPE 71

Query: 414 PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 473
            G+K KV    +    G K  +I ++ ++ +   K   L   AE  DR    G   K+ K
Sbjct: 72  DGEKVKV---FIITKDG-KGGQIQISKRRAVTLEKTEDLRKAAE--DRSPVLGKFVKVIK 125

Query: 474 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSM-----------YHVGQVVKCRIMSSIPAS 522
            G  +      +GF P S+  +    +P S+           +H G  +K  +      S
Sbjct: 126 GGYEIDLGGEYRGFCPMSKADVSRVEDPESLIGLSDYFIIDKFHAGTKLKSVV------S 179

Query: 523 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD- 581
           RR  L   +K  + +    V +G +V GVV   T     + +   G   G +   H+ D 
Sbjct: 180 RREYLEKRIKENKETFFSSVHIGDVVQGVVKSFTSFGAFIDL---GGFDGLL---HINDM 233

Query: 582 HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 640
              H T  K  +K G   + +L+ +D E+  + LS K+          S   + +   VV
Sbjct: 234 SWGHVTRPKDFVKKGQTIELRLINIDPETQKVNLSLKHM---HEDPWSSFEKNFNVGDVV 290

Query: 641 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETG 699
              V  +   G F+     + G A  S+    +R +  K    VG  V + IL  + +  
Sbjct: 291 KAPVTKLTTFGAFIEIAPGIEGLAHISELSWTKRVNNPKDVLDVGDVVEAKILGYDLDKK 350

Query: 700 RITLSLKQ 707
           R++L LKQ
Sbjct: 351 RVSLGLKQ 358


>gi|325674222|ref|ZP_08153911.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707]
 gi|325554902|gb|EGD24575.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707]
          Length = 528

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 188/428 (43%), Gaps = 64/428 (14%)

Query: 1000 SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEW 1053
            +N P      +   ++    + V++IGS   F    D +I     G  V G + KVD + 
Sbjct: 29   TNNPSGATQHMPSNTVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDE 88

Query: 1054 ALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1109
             LL I       + ++   +    +P+E+        +G  V   VL+  KE K  RL+L
Sbjct: 89   VLLDIGYKTEGVIPSRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLIL 140

Query: 1110 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1169
               +        + +   ++    + + V G + +++ G  GL++ IG   +      E+
Sbjct: 141  SKKR-----AQYERAWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEM 193

Query: 1170 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1229
            + +    P  G +               ++ K++E+ +      +V LS R+ L+   S 
Sbjct: 194  RRVRDLQPYVGKE---------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSE 235

Query: 1230 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1289
              S+              +  L    + +G V ++ + G F+ L   +D  V +S LS  
Sbjct: 236  VRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWK 281

Query: 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVI 1348
            +++ P +   +G  V   VL V+   +RV ++LK +      Q      +  H +G IV 
Sbjct: 282  HIDHPSEVVEVGNEVTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVP 336

Query: 1349 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1408
            G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RR
Sbjct: 337  GKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVGVGDDALVKVIDIDLERRR 395

Query: 1409 ISLGMKSS 1416
            ISL +K +
Sbjct: 396  ISLSLKQA 403



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 148/377 (39%), Gaps = 50/377 (13%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 63  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 122

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 123 EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 182

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 183 RGFLPASL--------VEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 234

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 235 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 293

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 294 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 329

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 330 ---AIGQIVPGKVTKLVPFGAFVRVEE--GIEGLVHISELAERHVEVPDQVVGVGDDALV 384

Query: 798 AILDVAKAERLVDLSLK 814
            ++D+    R + LSLK
Sbjct: 385 KVIDIDLERRRISLSLK 401



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 74  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 133

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 134 KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 189

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 190 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 245

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 246 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 299

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 300 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 355

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 356 EGLVHISELAERHVEVPDQVVGVGDDALVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 413

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 414 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 445


>gi|15827720|ref|NP_301983.1| 30S ribosomal protein S1 [Mycobacterium leprae TN]
 gi|221230197|ref|YP_002503613.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
 gi|13432211|sp|P46836.2|RS1_MYCLE RecName: Full=30S ribosomal protein S1
 gi|13093271|emb|CAC31763.1| 30S ribosomal protein S1 [Mycobacterium leprae]
 gi|219933304|emb|CAR71477.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
          Length = 481

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V+++GS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVPSPQIAVNDVGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGIVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGNE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 150/381 (39%), Gaps = 53/381 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G+V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 807 RLVDLSLKTV---FIDRFREA 824
           R + LSLK     +I+ F  A
Sbjct: 356 RRISLSLKQANEDYIEEFDPA 376



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 166/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGIVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGNEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+     +  +++E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA-----NEDYIEE 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDPDSNEWLEGF 407


>gi|256825135|ref|YP_003149095.1| 30S ribosomal protein S1 [Kytococcus sedentarius DSM 20547]
 gi|256688528|gb|ACV06330.1| SSU ribosomal protein S1P [Kytococcus sedentarius DSM 20547]
          Length = 492

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 176/384 (45%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +P E+        +G  V   
Sbjct: 33   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDIDPDEV------VVVGDTVEAL 86

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL   KE K  RL+L   +        + +   ++    +  +V G + +++ G  GL+V
Sbjct: 87   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEQIKEDDGVVTGSVIEVVKG--GLIV 137

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 138  DIGLRGFLPASLVEMRRVRDLQPYVG---------------QEIEAKIIELDKNRN---N 179

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   +               +++L    +  G V ++ + G F+ L 
Sbjct: 180  VVLSRRAWLEQTQSEVRTSF-------------LKELQRGQVRPGVVSSIVNFGAFVDLG 226

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK      A+Q +
Sbjct: 227  -GVDGLVHVSELSWKHIDHPGEVVEVGQEVTVEVLDVDMDRERVSLSLK------ATQED 279

Query: 1335 INNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
               L +  H +G IV G++ ++  +G F+ +E+  + GL H+SEL+E HV+  E   + G
Sbjct: 280  PWQLFARTHAIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHISELAERHVELPEQAVQVG 338

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            ++V V+++ +D E+RRISL +K +
Sbjct: 339  QEVFVRVIDIDLERRRISLSLKQA 362



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 151/361 (41%), Gaps = 31/361 (8%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           T  +   G +V+G ++ VD    ++      + + P   +S    + P +   VG  +  
Sbjct: 26  TMKNFDDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDIDPDEVVVVGDTVEA 85

Query: 427 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
            VL  + K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G+
Sbjct: 86  LVLQKEDKEGRLILSKKRAQYERAWGTIEQIKE--DDGVVTGSVIEVVKGGLIVDI--GL 141

Query: 485 QGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRV 536
           +GF P S  E+      +P    +VGQ ++ +I+      +++  SRR  L       R 
Sbjct: 142 RGFLPASLVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 197

Query: 537 SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 595
           S    ++ G +  GVV  +      V +   G   G +    L+  H++H      V++ 
Sbjct: 198 SFLKELQRGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVEV 251

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCF 653
           G E   ++L +D +   + LS K +  +  Q      +  H    +V G V  ++  G F
Sbjct: 252 GQEVTVEVLDVDMDRERVSLSLKATQEDPWQLF----ARTHAIGQIVPGKVTKLVPFGAF 307

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
           VR    + G    S+  +       +   VGQ V   ++D++ E  RI+LSLKQ+    T
Sbjct: 308 VRVEDGIEGLVHISELAERHVELPEQAVQVGQEVFVRVIDIDLERRRISLSLKQANQVGT 367

Query: 714 D 714
           D
Sbjct: 368 D 368



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 123/287 (42%), Gaps = 46/287 (16%)

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
           G +V G +  V  + V++ +   GY ++G IP+  L+  ++H      V+  G   + L+
Sbjct: 33  GDIVEGTIVKVDRDEVLLDI---GYKTEGVIPSRELS--IKHDIDPDEVVVVGDTVEALV 87

Query: 604 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
           +  +++   L+LS K +    A    +Q+  D      + VV G V  +++ G  V    
Sbjct: 88  LQKEDKEGRLILSKKRAQYERAWGTIEQIKED------DGVVTGSVIEVVKGGLIVDI-- 139

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDA 715
            L GF P S     +  DL    YVGQ + + I++++     + LS +   +   S    
Sbjct: 140 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 197

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
           SF++E    + +  ++ S  + G+       F+    ++G VH S      +S++     
Sbjct: 198 SFLKELQRGQVRPGVVSSIVNFGA-------FVDLGGVDGLVHVSE-----LSWK----- 240

Query: 776 YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
                H    G  VE G  +   +LDV      V LSLK    D ++
Sbjct: 241 -----HIDHPGEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 282


>gi|453075291|ref|ZP_21978079.1| 30S ribosomal protein S1 [Rhodococcus triatomae BKS 15-14]
 gi|452763581|gb|EME21862.1| 30S ribosomal protein S1 [Rhodococcus triatomae BKS 15-14]
          Length = 490

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 798 AILDVAKAERLVDLSLK 814
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 47.8 bits (112), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 375

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 376 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|269795322|ref|YP_003314777.1| 30S ribosomal protein S1P [Sanguibacter keddieii DSM 10542]
 gi|269097507|gb|ACZ21943.1| SSU ribosomal protein S1P [Sanguibacter keddieii DSM 10542]
          Length = 496

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 173/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +P E+        +G AV   
Sbjct: 38   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEV------VKVGDAVEAL 91

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 92   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGVVTGTVIEVVKG--GLIL 142

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 143  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------IEAKIIELDKNRN---N 184

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+    T S   ST + T          L    +  G V ++ + G F+ L 
Sbjct: 185  VVLSRRAWLE---QTQSEVRSTFLQT----------LQKGQVRPGVVSSIVNFGAFVDLG 231

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      +  
Sbjct: 232  -GVDGLVHVSELSWKHIDHPGEVVEVGQEVTVEVLDVDFDRERVSLSLKAT-----QEDP 285

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+  HV+  E +   G+
Sbjct: 286  WQTFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAVRHVELPEQVVNVGD 344

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
             V VK++ +D E+RRISL +K +
Sbjct: 345  DVFVKVIDIDLERRRISLSLKQA 367



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  PG+  +VG E+   VL 
Sbjct: 208 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPGEVVEVGQEVTVEVLD 266

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 267 VDFDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 323

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +     P  + +VG  V  +++      RRI+LS 
Sbjct: 324 HISELAVRHVELPEQVVNVGDDVFVKVIDIDLERRRISLSL 364



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 145/375 (38%), Gaps = 46/375 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P  +  VG 
Sbjct: 27  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGD 86

Query: 510 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 566
            V+  ++       R+ LS        +   + K+     +V+G V  V    +++ +  
Sbjct: 87  AVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDIGL 146

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 147 RGFLPASL--------VEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 198

Query: 626 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S     +    V  G V +I+  G FV  LG + G    S+          +   VG
Sbjct: 199 EVRSTFLQTLQKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPGEVVEVG 257

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
           Q V   +LDV+ +  R++LSLK +       +F + H                       
Sbjct: 258 QEVTVEVLDVDFDRERVSLSLK-ATQEDPWQTFARTH----------------------- 293

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 799
               IG V+ GKV +   FG  V  E+  +    I+     H +L    V  G  +   +
Sbjct: 294 ---AIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELPEQVVNVGDDVFVKV 350

Query: 800 LDVAKAERLVDLSLK 814
           +D+    R + LSLK
Sbjct: 351 IDIDLERRRISLSLK 365



 Score = 48.9 bits (115), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V PG+  KVG  +   VL  + 
Sbjct: 38  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDAVEALVLQKED 97

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 209

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H      V++ G E   +
Sbjct: 210 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVEVGQEVTVE 263

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 264 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 319

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISELAVRHVELPEQVVNVGDDVFVKVIDIDLERRRISLSLKQA 367


>gi|256826974|ref|YP_003150933.1| 30S ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
 gi|256583117|gb|ACU94251.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
          Length = 403

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 178/385 (46%), Gaps = 62/385 (16%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V K++ +  L+ I       + A+   +    +PS++       ++G ++   
Sbjct: 34   GDLVDGTVVKIERDEVLVDIGFKSEGVIPARELSIRKDADPSDI------VNLGDSIEAL 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            VL   KE K  RL+L       S K  +      +++     G+IV G + +++ G  GL
Sbjct: 88   VL--QKEDKDGRLIL-------SKKRAEYERAWISVEEKFKAGEIVSGEVIEVVKG--GL 136

Query: 1153 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1212
            ++ IG   +      +L+ +   D   G       PL         + +V+E+ R     
Sbjct: 137  ILDIGLRGFLPASLVDLRRVKDLDMYLGT------PL---------EARVIEMDRN---R 178

Query: 1213 FHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
             +V LS R  L+ G  +  +  LS               L+  M ++G V ++   G F+
Sbjct: 179  NNVVLSRRVLLEEGRKNERAEILSR--------------LTKGMRLKGTVSSIVDFGAFV 224

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
             L   +D  V +S LS  +V  P +   +G  V  +VL V+   +R+ + LK    +T  
Sbjct: 225  DLG-GIDGLVHISELSWSHVNHPSEVVKVGDEVEVQVLDVDLQRERISLGLK----QTTE 279

Query: 1332 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1391
               +  + +  VG I+ G++ +   +G F+ +   N+ GL H+SE++  H++    +  A
Sbjct: 280  DPWVKLVESYPVGSIIDGKVTKTVPFGAFVEL-GPNVEGLVHISEMANKHIEAPTQVVHA 338

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSS 1416
            G++VKVK+++++ E+RRISL MK++
Sbjct: 339  GDEVKVKVMEINTERRRISLSMKAA 363



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
           GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +VL V  
Sbjct: 207 GMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWSHVNHPSEVVKVGDEVEVQVLDVDL 265

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           + +RI++  K+T     + ++ SY   +   I  G +TK    G FV     V+G    S
Sbjct: 266 QRERISLGLKQTTEDPWVKLVESYPVGS---IIDGKVTKTVPFGAFVELGPNVEGLVHIS 322

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           E+       P+ + H G  VK ++M      RRI+LS 
Sbjct: 323 EMANKHIEAPTQVVHAGDEVKVKVMEINTERRRISLSM 360



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/366 (20%), Positives = 152/366 (41%), Gaps = 52/366 (14%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G + KIE+    V      +G  P  EL +    +PS + ++G  ++  ++      
Sbjct: 36  LVDGTVVKIERDEVLVDIGFKSEGVIPARELSIRKDADPSDIVNLGDSIEALVLQKEDKD 95

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +   +S ++  K G +VSG V  V    +++ +  +G+   ++     
Sbjct: 96  GRLILSKKRAEYERAWISVEEKFKAGEIVSGEVIEVVKGGLILDIGLRGFLPASLVDLRR 155

Query: 580 ADHLEH--ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 636
              L+    T +++         +++ +D   +N++LS +  L    +   ++  S +  
Sbjct: 156 VKDLDMYLGTPLEA---------RVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSRLTK 206

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+ 
Sbjct: 207 GMRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWSHVNHPSEVVKVGDEVEVQVLDVDL 265

Query: 697 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 756
           +  RI+L LKQ+                                +K VE + +GS+I+GK
Sbjct: 266 QRERISLGLKQTTEDPW---------------------------VKLVESYPVGSIIDGK 298

Query: 757 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLV 809
           V ++  FG  V      +V G +   ++A   +E       +G  ++  ++++    R +
Sbjct: 299 VTKTVPFGAFVEL--GPNVEGLVHISEMANKHIEAPTQVVHAGDEVKVKVMEINTERRRI 356

Query: 810 DLSLKT 815
            LS+K 
Sbjct: 357 SLSMKA 362



 Score = 41.2 bits (95), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 145/352 (41%), Gaps = 23/352 (6%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           T ++   G +V G V+ ++    +V      + + P   +S  +   P     +G  +  
Sbjct: 27  TLTEFDEGDLVDGTVVKIERDEVLVDIGFKSEGVIPARELSIRKDADPSDIVNLGDSIEA 86

Query: 427 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
            VL  + K   +   K   + + A +S   +     I  G + ++ K G  +    G++G
Sbjct: 87  LVLQKEDKDGRLILSKKRAEYERAWISVEEKFKAGEIVSGEVIEVVKGGLILDI--GLRG 144

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDD 540
           F P S + L    +   MY +G  ++ R++      +++  SRR+ L    K  R     
Sbjct: 145 FLPASLVDLRR-VKDLDMY-LGTPLEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILS 202

Query: 541 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEF 599
            +  G  + G V  +      V +   G   G +    L+  H+ H +    V+K G E 
Sbjct: 203 RLTKGMRLKGTVSSIVDFGAFVDL---GGIDGLVHISELSWSHVNHPS---EVVKVGDEV 256

Query: 600 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFL 657
           + Q+L +D +   + L  K +  +   +L       +P  S++ G V   +  G FV   
Sbjct: 257 EVQVLDVDLQRERISLGLKQTTEDPWVKLVES----YPVGSIIDGKVTKTVPFGAFVELG 312

Query: 658 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
             + G    S+  +      ++  + G  V+  ++++N+E  RI+LS+K + 
Sbjct: 313 PNVEGLVHISEMANKHIEAPTQVVHAGDEVKVKVMEINTERRRISLSMKAAA 364


>gi|251796396|ref|YP_003011127.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JDR-2]
 gi|247544022|gb|ACT01041.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
          Length = 411

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 173/378 (45%), Gaps = 48/378 (12%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
            G  V G + K+D+  A +++       + + +      +L        +G+ V   V+SI
Sbjct: 22   GDTVKGTIIKIDDNQAYVSLGYKYDGVIPVRE--LSAVQLDNANDAVQVGQEVELKVVSI 79

Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
            + EK+ L L  R   DG      + + D +Q+    G++    ++ ++ G  GLV  +G 
Sbjct: 80   DDEKEKLVLSKR-LIDG------ERAWDGLQSRFESGEVFEVAVADVVKG--GLVADVG- 129

Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
             + G +  + ++   V D             S Y +G+ ++ KV EI R       V LS
Sbjct: 130  -VRGFIPASMVERHFVED------------FSDY-KGRTLRVKVKEIDRE---NNKVILS 172

Query: 1219 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
             +  LD     N            +H+  I  L     ++G V+ +T  G F+ +   +D
Sbjct: 173  AKDVLDAEFEQNK-----------QHV--IAGLQVGAQLEGTVQRLTPFGAFVDIG-GID 218

Query: 1279 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1338
              V +S LS  +V  P+     G+ V  +VL V+P + ++ +++K +       +     
Sbjct: 219  GLVHVSELSWQHVAHPKDVVSEGQQVTVKVLKVDPAAGKISLSIKAAQPGPWESA----A 274

Query: 1339 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1398
               +VGDIV G ++R+ ++G F+ I    + GL H+S+++  H+     + + G++V+ K
Sbjct: 275  GQFNVGDIVTGTVRRLVTFGAFVEIA-PGVEGLVHISQIAHRHIATPFEVLKEGQEVQAK 333

Query: 1399 ILKVDKEKRRISLGMKSS 1416
            +L  +  ++R+SL +K +
Sbjct: 334  VLDFNPAEKRVSLSIKET 351



 Score = 48.9 bits (115), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 145/351 (41%), Gaps = 31/351 (8%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K G  VKG +I +D   A V        + P+  +S  ++       +VG E+  +V+ 
Sbjct: 19  LKKGDTVKGTIIKIDDNQAYVSLGYKYDGVIPVRELSAVQLDNANDAVQVGQEVELKVVS 78

Query: 431 VKSKRITVTHKKTLVKSKLAI--LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           +  ++  +   K L+  + A   L S  E+ +  +    +  + K G       GV+GF 
Sbjct: 79  IDDEKEKLVLSKRLIDGERAWDGLQSRFESGE--VFEVAVADVVKGGLVADV--GVRGFI 134

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPTRVSEDD 540
           P S +      E  S Y  G+ ++ ++      + ++ LS        F      V    
Sbjct: 135 PASMVERH-FVEDFSDYK-GRTLRVKVKEIDRENNKVILSAKDVLDAEFEQNKQHVIAG- 191

Query: 541 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 600
            +++G+ + G V  +TP    V +   G   G +    L+   +H    K V+  G +  
Sbjct: 192 -LQVGAQLEGTVQRLTPFGAFVDI---GGIDGLVHVSELS--WQHVAHPKDVVSEGQQVT 245

Query: 601 -QLLVLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNIIETGCFVRFL 657
            ++L +D  +  + LS     I +AQ  P  S A   +   +V G V  ++  G FV   
Sbjct: 246 VKVLKVDPAAGKISLS-----IKAAQPGPWESAAGQFNVGDIVTGTVRRLVTFGAFVEIA 300

Query: 658 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
             + G    S+      A   +    GQ V++ +LD N    R++LS+K++
Sbjct: 301 PGVEGLVHISQIAHRHIATPFEVLKEGQEVQAKVLDFNPAEKRVSLSIKET 351



 Score = 44.3 bits (103), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 82/383 (21%), Positives = 156/383 (40%), Gaps = 60/383 (15%)

Query: 970  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL 1029
            E+N      ++N F + K G TV   II    K D  ++++        ++ V E+ +  
Sbjct: 4    EINVQDQAAMDN-FVSLKKGDTVKGTII----KIDDNQAYVSLGYKYDGVIPVRELSAVQ 58

Query: 1030 LFEECD-VSIGQRVTGYVYKVDNEWALLTISRHL---KAQLFILDSAYEPSELQEFQRRF 1085
            L    D V +GQ V   V  +D+E   L +S+ L   +     L S +E  E+ E     
Sbjct: 59   LDNANDAVQVGQEVELKVVSIDDEKEKLVLSKRLIDGERAWDGLQSRFESGEVFEVA--- 115

Query: 1086 HIGKAVTGHVLSINKEKKLL--RLVLRPFQDGISD--------KTVDISNDNMQTFIHEG 1135
             +   V G +++    +  +   +V R F +  SD        K  +I  +N +  +   
Sbjct: 116  -VADVVKGGLVADVGVRGFIPASMVERHFVEDFSDYKGRTLRVKVKEIDRENNKVILSAK 174

Query: 1136 DIVGGRISK----ILSGVGGLVVQIGPHLYGRVH----FTELKNICVSDPLSGYDEGQFD 1187
            D++     +    +++G+     Q+G  L G V     F    +I   D L    E  + 
Sbjct: 175  DVLDAEFEQNKQHVIAGL-----QVGAQLEGTVQRLTPFGAFVDIGGIDGLVHVSELSWQ 229

Query: 1188 ----PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                P     EGQ V  KVL++         + LS++++  G   + +   +        
Sbjct: 230  HVAHPKDVVSEGQQVTVKVLKVDPA---AGKISLSIKAAQPGPWESAAGQFNV------- 279

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                        IV G V+ + + G F+ ++  ++  V +S ++  ++ +P +    G+ 
Sbjct: 280  ----------GDIVTGTVRRLVTFGAFVEIAPGVEGLVHISQIAHRHIATPFEVLKEGQE 329

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSD 1326
            V  +VL   P  KRV +++K ++
Sbjct: 330  VQAKVLDFNPAEKRVSLSIKETE 352



 Score = 42.0 bits (97), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 1332 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1391
            Q+ ++N  +L  GD V G I +++    ++++      G+  V ELS   +DN     + 
Sbjct: 10   QAAMDNFVSLKKGDTVKGTIIKIDDNQAYVSL-GYKYDGVIPVRELSAVQLDNANDAVQV 68

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1438
            G++V++K++ +D EK ++ L  +    +   D LQ  S  ES E  E
Sbjct: 69   GQEVELKVVSIDDEKEKLVLSKRLIDGERAWDGLQ--SRFESGEVFE 113


>gi|403746310|ref|ZP_10954843.1| RNA binding S1 domain-containing protein [Alicyclobacillus hesperidum
            URH17-3-68]
 gi|403120641|gb|EJY54995.1| RNA binding S1 domain-containing protein [Alicyclobacillus hesperidum
            URH17-3-68]
          Length = 393

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 172/389 (44%), Gaps = 56/389 (14%)

Query: 1030 LFEECDVSIGQRVTGYVYKVDNEWALLTISR----HLKAQLFILDSAYEPSELQEFQRRF 1085
            +  +  V  G  VTG V  VD     + +S     H+  Q         P+E+       
Sbjct: 15   MLTDAAVREGDVVTGEVTAVDENGVTVALSHGFEGHIAPQELSAVPGTNPTEVTS----- 69

Query: 1086 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1145
             +G  +T  V+ ++ E   + L  R  +   +        + MQ  +  G+ +   I  +
Sbjct: 70   -VGSQITAVVVKVDMESGQVTLSKRRAEQASA-------WNRMQELLASGEPIEVEIRDV 121

Query: 1146 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
            + G  GLV  +G   +               P S  D    + L  + +G+ ++ KV+E+
Sbjct: 122  VKG--GLVADVGVRAF--------------IPASLVDRRFVENLDEF-KGKTLRAKVVEV 164

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
                       LS R+ L+  +   +  L             +E+L P  +++G V+ +T
Sbjct: 165  DPEKNKLI---LSRRALLEEETEAKAKAL-------------MEELKPGDVIEGTVQRLT 208

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
              G F+ +    D  V +S LS  +V  P +    G  V  RVL V+P + R+ +++K +
Sbjct: 209  DFGAFVDIG-GADGLVHISELSFSHVNHPSEVVHEGDRVKVRVLRVDPEAGRISLSIKAA 267

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
                  +    + ++   GD+V G +KRV  +G F+ ++   L GL HVS++S +HV + 
Sbjct: 268  LPEPWEE----HANDYQPGDVVQGVVKRVVDFGAFVELQ-PGLEGLVHVSQISNEHVAHA 322

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              + + G++V V++L VD E+RRISL M+
Sbjct: 323  SDVLQPGQEVTVRVLSVDPERRRISLSMR 351



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 14/122 (11%)

Query: 1301 GKLVAGRVLSVEP------LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1354
            GK +  +V+ V+P      LS+R  +  +T     A   E      L  GD++ G ++R+
Sbjct: 154  GKTLRAKVVEVDPEKNKLILSRRALLEEETEAKAKALMEE------LKPGDVIEGTVQRL 207

Query: 1355 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              +G F+ I   +  GL H+SELS  HV++   +   G++VKV++L+VD E  RISL +K
Sbjct: 208  TDFGAFVDIGGAD--GLVHISELSFSHVNHPSEVVHEGDRVKVRVLRVDPEAGRISLSIK 265

Query: 1415 SS 1416
            ++
Sbjct: 266  AA 267



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 149/363 (41%), Gaps = 31/363 (8%)

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
           + T + V+ G VV G+V AVD  G  V    G +       +S      P +   VG+++
Sbjct: 15  MLTDAAVREGDVVTGEVTAVDENGVTVALSHGFEGHIAPQELSAVPGTNPTEVTSVGSQI 74

Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVR 479
              V+ V  +   VT  K     + A  +S       L+  G   ++E     K G    
Sbjct: 75  TAVVVKVDMESGQVTLSK-----RRAEQASAWNRMQELLASGEPIEVEIRDVVKGGLVAD 129

Query: 480 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRV 536
              GV+ F P S +  D     +     G+ ++ +++   P   ++ LS    + + T  
Sbjct: 130 V--GVRAFIPASLV--DRRFVENLDEFKGKTLRAKVVEVDPEKNKLILSRRALLEEETEA 185

Query: 537 SEDDLV---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 592
               L+   K G ++ G V  +T     V +   G + G +    L+  H+ H +    V
Sbjct: 186 KAKALMEELKPGDVIEGTVQRLTDFGAFVDI---GGADGLVHISELSFSHVNHPS---EV 239

Query: 593 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 651
           +  G     ++L +D E+  + LS K +L    ++  +D     P  VV G V  +++ G
Sbjct: 240 VHEGDRVKVRVLRVDPEAGRISLSIKAALPEPWEEHAND---YQPGDVVQGVVKRVVDFG 296

Query: 652 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
            FV     L G    S+  +   A  S     GQ V   +L V+ E  RI+LS+++   S
Sbjct: 297 AFVELQPGLEGLVHVSQISNEHVAHASDVLQPGQEVTVRVLSVDPERRRISLSMREPGPS 356

Query: 712 STD 714
            ++
Sbjct: 357 RSE 359



 Score = 41.6 bits (96), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 145/356 (40%), Gaps = 40/356 (11%)

Query: 96  LYKGLSLETVQEGMVLTAYVKSIED--------HGYILHFGLPSFTGFLPRNNLAENSGI 147
           L + L+   V+EG V+T  V ++++        HG+  H   P     +P  N  E + +
Sbjct: 12  LREMLTDAAVREGDVVTGEVTAVDENGVTVALSHGFEGHIA-PQELSAVPGTNPTEVTSV 70

Query: 148 DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 207
               G  +  VV  +D     V LS      +    +       +LL  G  +   ++ +
Sbjct: 71  ----GSQITAVVVKVDMESGQVTLSKRRAEQASAWNR-----MQELLASGEPIEVEIRDV 121

Query: 208 LENGVM--LSFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 264
           ++ G++  +    +   + VD   ++N         D  + K + A+++ VDP    + L
Sbjct: 122 VKGGLVADVGVRAFIPASLVDRRFVENL--------DEFKGKTLRAKVVEVDPEKNKLIL 173

Query: 265 TLNPYLLHN-----RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD 319
           +    L        +A    +K GD+ + +     D   G  +DI          V IS+
Sbjct: 174 SRRALLEEETEAKAKALMEELKPGDVIEGTVQRLTD--FGAFVDIGGAD----GLVHISE 227

Query: 320 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 379
           ++   V    +   EG  V+VR+L      G  +  +KA+  E      +D +PG VV+G
Sbjct: 228 LSFSHVNHPSEVVHEGDRVKVRVLRVDPEAGRISLSIKAALPEPWEEHANDYQPGDVVQG 287

Query: 380 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 435
            V  V  FGA V+   G++ L  +  +S   +       + G E+  RVL V  +R
Sbjct: 288 VVKRVVDFGAFVELQPGLEGLVHVSQISNEHVAHASDVLQPGQEVTVRVLSVDPER 343


>gi|396584066|ref|ZP_10484565.1| 30S ribosomal protein S1 [Actinomyces sp. ICM47]
 gi|395548355|gb|EJG15630.1| 30S ribosomal protein S1 [Actinomyces sp. ICM47]
          Length = 478

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 184/411 (44%), Gaps = 56/411 (13%)

Query: 1013 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1066
            ++     + +++IGS+  L    D +I     G  V G V KVD++  LL I    K + 
Sbjct: 1    MTTNTPQVAINDIGSEADLIAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEG 58

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
             IL                 +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 59   VILSRELSIKHDVNPDDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 111

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 112  KIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 165

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 166  -----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 199

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 200  -LHTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 257

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 258  EVLDVDMDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 312

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL++ HV+  + + + GE+V VK++ +D E+RRISL +K +
Sbjct: 313  -GIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 144/371 (38%), Gaps = 56/371 (15%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G + K++     +      +G     EL +     P  +  VG  ++  ++  
Sbjct: 31  NDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQK 90

Query: 519 IPASRRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 570
                R+ LS           K  ++ E+D      +V+G V  V    +++ +  +G+ 
Sbjct: 91  EDKEGRLLLSKKRAQYERAWGKIEKIKEED-----GVVTGTVIEVVKGGLILDIGLRGFL 145

Query: 571 KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPS 629
             ++        +E   V       G E + +++ LD   +N++LS +  L  +  ++ +
Sbjct: 146 PASL--------VEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 197

Query: 630 DASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 688
           +  H +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V 
Sbjct: 198 NFLHTLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 256

Query: 689 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 748
             +LDV+ +  R++LSLK +      A F + H                           
Sbjct: 257 VEVLDVDMDRERVSLSLKATQEDPWQA-FARTH--------------------------A 289

Query: 749 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVA 803
           IG V+ GKV +   FG  V  E+  +    I+     H +L    V+ G  +   ++D+ 
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDID 349

Query: 804 KAERLVDLSLK 814
              R + LSLK
Sbjct: 350 LERRRISLSLK 360



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 33  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKED 92

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLLLSKKRAQYERAWGKIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 204

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 259 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 313

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362


>gi|359772824|ref|ZP_09276239.1| 30S ribosomal protein S1 [Gordonia effusa NBRC 100432]
 gi|359310011|dbj|GAB19017.1| 30S ribosomal protein S1 [Gordonia effusa NBRC 100432]
          Length = 491

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         ++   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPNEVVQVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 798 AILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.4 bits (111), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H      V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPN---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPSKYGMADSYDDQGNYIFPEGFDAETNEWLEGF 407


>gi|294501088|ref|YP_003564788.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
 gi|295706435|ref|YP_003599510.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
 gi|294351025|gb|ADE71354.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
 gi|294804094|gb|ADF41160.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
          Length = 378

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 6/186 (3%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +E L    +++G V+ +T  G F+ +   +D  V +S LS   VE P      G  V  +
Sbjct: 182  LESLKEGQVLEGTVQRLTDFGAFVDVG-GVDGLVHISQLSHTRVEKPSDVVAEGDAVKVK 240

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            VLSV+  + RV +++K  D+     S I+  + L  GD+V G +KR+ S+G F+ +    
Sbjct: 241  VLSVDKSTGRVSLSIK--DTLEGPWSNIS--TKLRQGDVVDGTVKRLVSFGAFVEV-LPG 295

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GL H+S++S  H+     +   GEKV VK+L V++++RR+SL ++    +   D    
Sbjct: 296  VEGLVHISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSIRDLEEEEQEDYGDY 355

Query: 1428 SSEEES 1433
              +EES
Sbjct: 356  ELQEES 361



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K G V++G V  +  FGA V   GGV  L  +  +S   + KP      G  +  +VL 
Sbjct: 185 LKEGQVLEGTVQRLTDFGAFVDV-GGVDGLVHISQLSHTRVEKPSDVVAEGDAVKVKVLS 243

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V   + R++++ K TL +   + +S+     D  +  G + ++   G FV    GV+G  
Sbjct: 244 VDKSTGRVSLSIKDTL-EGPWSNISTKLRQGD--VVDGTVKRLVSFGAFVEVLPGVEGLV 300

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             S++       P  +   G+ V  +++      RR++LS 
Sbjct: 301 HISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSI 341



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 42/67 (62%)

Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1396
             +++L VG+ V G I +VE   +++ + N+ L G+  +SEL+  H++    + + G +V+
Sbjct: 9    EVTSLEVGETVKGTITKVEEKQVYVDVPNSKLDGIIPISELASLHIEKAGDVIQEGAEVE 68

Query: 1397 VKILKVD 1403
             K++KV+
Sbjct: 69   AKVIKVE 75


>gi|323356451|ref|YP_004222847.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
 gi|323272822|dbj|BAJ72967.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
          Length = 484

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 172/384 (44%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  + G V K+D +  LL +       + ++   +    +P+E+       ++G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPNEV------VNVGDHVEAL 91

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1153
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVEK------IKENDGVVTGSVIEVVKG--GLI 141

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V IG   +      EL+ +    P  G               Q ++ K+LE+ +      
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG---------------QEIEAKILELDKNRN--- 183

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
            +V LS R+ L+   S + +               + +L    + +G V ++ + G F+ L
Sbjct: 184  NVVLSRRALLEQTQSESRTTF-------------LNNLHKGQVRKGTVSSIVNFGAFVDL 230

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  V +S LS  ++E   +   +G+ V   +L V+   +RV ++LK +      + 
Sbjct: 231  G-GVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKAT-----QED 284

Query: 1334 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
                 +  H +G I  G++ ++  +G F+ + +  + GL H+SELS  HV+  E +   G
Sbjct: 285  PWQVFARTHAIGQIAPGKVTKLVPFGAFVRVAD-GIEGLVHISELSGKHVELAEQVVSVG 343

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            E+V VKI+ +D E+RRISL +K +
Sbjct: 344  EEVFVKIIDIDLERRRISLSLKQA 367



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 155/352 (44%), Gaps = 33/352 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +++G V+ +D    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPNEVVNVGDHVEALVLQKED 97

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVEKIKE-NDGVVT-GSVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R +  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRTTFLNNLH 209

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  G V  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGTVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    +  G V  ++  G FVR    +
Sbjct: 264 ILEVDLDRERVSLSLKATQEDPWQVF----ARTHAIGQIAPGKVTKLVPFGAFVRVADGI 319

Query: 661 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
            G    S+ + G+  +L+ +   VG+ V   I+D++ E  RI+LSLKQ+  S
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGEEVFVKIIDIDLERRRISLSLKQANES 370


>gi|429729646|ref|ZP_19264303.1| 30S ribosomal protein S1 [Corynebacterium durum F0235]
 gi|429149040|gb|EKX92030.1| 30S ribosomal protein S1 [Corynebacterium durum F0235]
          Length = 491

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEDFLAAVDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+        +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPGEV------VQVGDEIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----MEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HV+  + +    E+  VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAERHVEVPDQVVGVNEEAMVKVIDIDLERRRISLSLKQA 363



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 165/401 (41%), Gaps = 56/401 (13%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVQVGDEIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDE 255

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRF 656
              ++L +D +   + LS K ++ +  +      +  H    +V G V  ++  G FVR 
Sbjct: 256 VTVEVLDVDLDRERVSLSLKATMEDPWRVF----ARTHAVGQIVPGKVTKLVPFGAFVRV 311

Query: 657 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
              + G    S+  +       +   V +     ++D++ E  RI+LSLKQ+     D  
Sbjct: 312 EEGIEGLVHISELAERHVEVPDQVVGVNEEAMVKVIDIDLERRRISLSLKQA-----DED 366

Query: 717 FMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           + ++      K  M  S    G+ +          +W+EGF
Sbjct: 367 YTED--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|378548483|ref|ZP_09823699.1| hypothetical protein CCH26_00290 [Citricoccus sp. CH26A]
          Length = 484

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 177/384 (46%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD +  LL I       + ++   +    +P E+        +G  V   
Sbjct: 35   GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEV------VAVGDNVEAL 88

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +  +++    E  +V G + +++ G  GL+V
Sbjct: 89   VLT--KEDKEGRLILSKKR-----AQYERAWGSIEKIKEEDGVVTGTVIEVVKG--GLIV 139

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 140  DIGLRGFLPASLVEMRRVRDLAPYIG---------------QELEAKIIELDKNRN---N 181

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+           L K+E      +  G V ++ + G F+ L 
Sbjct: 182  VVLSRRAWLEQTQSEVRSNF----------LHKLE---KGQVRTGTVSSIVNFGAFVDLG 228

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK      A+Q +
Sbjct: 229  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLK------ATQED 281

Query: 1335 INNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
               L +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+  H+D  E +    
Sbjct: 282  PWQLFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELASRHIDTAEQVVSVN 340

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            +++ VK++ +D E+RRISL +K +
Sbjct: 341  DELFVKVIDIDLERRRISLSLKQA 364



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 146/348 (41%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 35  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVAVGDNVEALVLTKED 94

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGSIEKIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 150

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 151 LVEMRRVRDLAP----YIGQELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSNFLHKLE 206

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + +G V  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRTGTVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 260

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 261 VLEVDMDRERVSLSLKATQEDPWQLF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 316

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 317 EGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSLKQA 364


>gi|334563708|ref|ZP_08516699.1| 30S ribosomal protein S1 [Corynebacterium bovis DSM 20582]
          Length = 488

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 183/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEDFLAAVDSTIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDEIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIG--------- 164

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QEIEAKIIELDKHRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HVD  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAERHVDVPDQVVTVGQDAMVKVIDIDLERRRISLSLKQA 363



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+  +       +   VGQ     ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAERHVDVPDQVVTVGQDAMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|315604243|ref|ZP_07879309.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313949|gb|EFU62000.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 478

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 184/411 (44%), Gaps = 56/411 (13%)

Query: 1013 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1066
            ++     + +++IGS+  L    D +I     G  V G V KVD++  LL I    K + 
Sbjct: 1    MTTNTPQVAINDIGSEADLIAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEG 58

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
             IL            +    +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 59   VILSRELSIKHDVNPEDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 111

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 112  KIEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 165

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 166  -----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 199

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 200  -LHTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 257

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 258  EVLDVDMDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 312

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL++ HV+  + + + GE+V VK++ +D E+RRISL +K +
Sbjct: 313  -GIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H+ ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+ 
Sbjct: 199 FLHT-LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVT 256

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G
Sbjct: 257 VEVLDVDMDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDG 313

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSL 359



 Score = 45.8 bits (107), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 33  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPEDVVAVGDQIEALVLQKED 92

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLLLSKKRAQYERAWGKIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 204

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 258

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 259 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 313

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362


>gi|355574274|ref|ZP_09044117.1| hypothetical protein HMPREF1008_00094 [Olsenella sp. oral taxon 809
            str. F0356]
 gi|354818564|gb|EHF03053.1| hypothetical protein HMPREF1008_00094 [Olsenella sp. oral taxon 809
            str. F0356]
          Length = 390

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 180/391 (46%), Gaps = 64/391 (16%)

Query: 1034 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH------I 1087
             D   G  VTG V K++++  LL I    K++  I      PS     ++  +      +
Sbjct: 29   TDFDEGDLVTGTVVKIEHDEVLLDIG--FKSEGVI------PSRELSIRKDINPEDVVAL 80

Query: 1088 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKI 1145
            G  +   VL   KE K  RL+L       S K  +     + ++   + G+ V G + ++
Sbjct: 81   GDGIEALVL--QKEDKEGRLIL-------SKKRAEYERAWNRVEEKFNAGENVEGEVIEV 131

Query: 1146 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
            + G  GL++ IG  L G +            P S  D  +   L+ +  G  ++ +V+E+
Sbjct: 132  VKG--GLILDIG--LRGFL------------PASLVDLRRVKDLNAF-LGTRIEARVIEM 174

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
             R      +V LS R  L+       S++             +  L P M ++G V ++ 
Sbjct: 175  DRN---RNNVVLSRRVVLEEARKAERSEI-------------LSKLQPGMRLKGSVSSIV 218

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
              G F+ L   +D  + +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK  
Sbjct: 219  DFGAFVDLG-GIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK-- 275

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
              +T        +    VG IV G + ++ ++G F+ + N  + GL H+SE+++ HVD  
Sbjct: 276  --QTTEDPWRTLVKKYPVGAIVEGTVTKLVTFGAFVDLGN-GVEGLVHISEMAKQHVDAP 332

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              +   G+ V+VK++++D ++RRISL MKS+
Sbjct: 333  AQVCAVGDTVQVKVMEIDLDRRRISLSMKSA 363



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S ++PGM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +V
Sbjct: 202 SKLQPGMRLKGSVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQV 260

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +RI++  K+T       ++  Y       I  G +TK+   G FV   NGV+G
Sbjct: 261 LDVDLNRERISLGLKQTTEDPWRTLVKKYPVGA---IVEGTVTKLVTFGAFVDLGNGVEG 317

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SE+       P+ +  VG  V+ ++M      RRI+LS 
Sbjct: 318 LVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDRRRISLSM 360



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 147/369 (39%), Gaps = 58/369 (15%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           +  G + KIE     +      +G  P  EL +     P  +  +G  ++  ++      
Sbjct: 36  LVTGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDINPEDVVALGDGIEALVLQKEDKE 95

Query: 523 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
            R+ LS     +     RV E      G  V G V  V    +++ +  +G+    +P  
Sbjct: 96  GRLILSKKRAEYERAWNRVEEK--FNAGENVEGEVIEVVKGGLILDIGLRGF----LPA- 148

Query: 578 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 636
            L D L     + + +    E  +++ +D   +N++LS +  L  + +   S+  S + P
Sbjct: 149 SLVD-LRRVKDLNAFLGTRIEA-RVIEMDRNRNNVVLSRRVVLEEARKAERSEILSKLQP 206

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              + G V +I++ G FV  LG + G    S+         S+   VGQ V   +LDV+ 
Sbjct: 207 GMRLKGSVSSIVDFGAFVD-LGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDL 265

Query: 697 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVI 753
              RI+L LKQ+                              +E  W   V+ + +G+++
Sbjct: 266 NRERISLGLKQT------------------------------TEDPWRTLVKKYPVGAIV 295

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAE 806
           EG V +   FG  V     + V G +   ++A   V++       G  +Q  ++++    
Sbjct: 296 EGTVTKLVTFGAFVDL--GNGVEGLVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDR 353

Query: 807 RLVDLSLKT 815
           R + LS+K+
Sbjct: 354 RRISLSMKS 362


>gi|291545113|emb|CBL18222.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
            DMAPP forming) [Ruminococcus champanellensis 18P13]
          Length = 661

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 91/160 (56%), Gaps = 6/160 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +  G VK++TS G F+ L   +D  V +S LS   ++ P +   +G ++   + +++P +
Sbjct: 484  VFTGEVKSLTSYGAFVDLG-GIDGMVHISELSWKRIKHPSEVVKVGDMLEVYIKALDPEA 542

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +  K  +     Q     L+  HVGD+V   +  +  +G F  I +  + GL H+S
Sbjct: 543  NRISLGYKKKEDNPWEQF----LAKYHVGDVVDATVVSITQFGAFAQIMD-GVDGLIHIS 597

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            +++   VDN++ I   G++V+VKI+++D EK+RIS+ M++
Sbjct: 598  QIANQRVDNVKDILSVGQQVQVKIVEIDPEKKRISISMRA 637



 Score = 48.9 bits (115), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 5/159 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            I++G V+N    G  +        +V +     G     +      K V  +++ V    
Sbjct: 397  ILKGIVQNAVKGGLIVSCD---GVRVFVPASQSGLGRDADLSVLKNKPVELKIIEVNEQR 453

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R   ++K         +         VG +  G++K + SYG F+ +   +  G+ H+S
Sbjct: 454  RRAVGSIKAVAKAQKDAARAKFWETAEVGQVFTGEVKSLTSYGAFVDLGGID--GMVHIS 511

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            ELS   + +   + + G+ ++V I  +D E  RISLG K
Sbjct: 512  ELSWKRIKHPSEVVKVGDMLEVYIKALDPEANRISLGYK 550



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 147/346 (42%), Gaps = 24/346 (6%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +  G  VKG V++V++  AIV          PL  +++    KP    + G EL   V  
Sbjct: 305 IHTGERVKGYVVSVNNNEAIVDVGTKHTGYVPLDELTDDPSKKPADLVQPGDELDLIVTK 364

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAP 489
           +      V   K  V  +L    + A+A +   I  G +    K G  V   +GV+ F P
Sbjct: 365 INDPEGYVLLSKRRV-DELVGFENIAKAKEEGTILKGIVQNAVKGGLIVSC-DGVRVFVP 422

Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-------DLV 542
            S+ GL    + S + +  + V+ +I+  +   RR  +  +    +  +D       +  
Sbjct: 423 ASQSGLGRDADLSVLKN--KPVELKIIE-VNEQRRRAVGSIKAVAKAQKDAARAKFWETA 479

Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQ 601
           ++G + +G V  +T     V +   G   G +    L+   ++H +    V+K G   + 
Sbjct: 480 EVGQVFTGEVKSLTSYGAFVDL---GGIDGMVHISELSWKRIKHPS---EVVKVGDMLEV 533

Query: 602 LL-VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
            +  LD E++ + L  K    N  +Q     +  H   VV   V +I + G F + +  +
Sbjct: 534 YIKALDPEANRISLGYKKKEDNPWEQF---LAKYHVGDVVDATVVSITQFGAFAQIMDGV 590

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
            G    S+  + +  ++     VGQ V+  I++++ E  RI++S++
Sbjct: 591 DGLIHISQIANQRVDNVKDILSVGQQVQVKIVEIDPEKKRISISMR 636


>gi|154508851|ref|ZP_02044493.1| hypothetical protein ACTODO_01361 [Actinomyces odontolyticus ATCC
            17982]
 gi|293192694|ref|ZP_06609648.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
 gi|399526549|ref|ZP_10766316.1| 30S ribosomal protein S1 [Actinomyces sp. ICM39]
 gi|153798485|gb|EDN80905.1| 30S ribosomal protein S1 [Actinomyces odontolyticus ATCC 17982]
 gi|292820201|gb|EFF79198.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
 gi|398362900|gb|EJN46562.1| 30S ribosomal protein S1 [Actinomyces sp. ICM39]
          Length = 478

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 184/411 (44%), Gaps = 56/411 (13%)

Query: 1013 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1066
            ++     + +++IGS+  L    D +I     G  V G V KVD++  LL I    K + 
Sbjct: 1    MTTNTPQVAINDIGSEADLIAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEG 58

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
             IL                 +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 59   VILSRELSIKHDVNPDDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 111

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 112  QIEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 165

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 166  -----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 199

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 200  -LHTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 257

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 258  EVLDVDMDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 312

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL++ HV+  + + + GE+V VK++ +D E+RRISL +K +
Sbjct: 313  -GIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 144/371 (38%), Gaps = 56/371 (15%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G + K++     +      +G     EL +     P  +  VG  ++  ++  
Sbjct: 31  NDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQK 90

Query: 519 IPASRRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 570
                R+ LS           +  +V E+D      +V+G V  V    +++ +  +G+ 
Sbjct: 91  EDKEGRLLLSKKRAQYERAWGQIEKVKEED-----GVVTGTVIEVVKGGLILDIGLRGFL 145

Query: 571 KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPS 629
             ++        +E   V       G E + +++ LD   +N++LS +  L  +  ++ +
Sbjct: 146 PASL--------VEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 197

Query: 630 DASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 688
           +  H +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V 
Sbjct: 198 NFLHTLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 256

Query: 689 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 748
             +LDV+ +  R++LSLK +      A F + H                           
Sbjct: 257 VEVLDVDMDRERVSLSLKATQEDPWQA-FARTH--------------------------A 289

Query: 749 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVA 803
           IG V+ GKV +   FG  V  E+  +    I+     H +L    V+ G  +   ++D+ 
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDID 349

Query: 804 KAERLVDLSLK 814
              R + LSLK
Sbjct: 350 LERRRISLSLK 360



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 33  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKED 92

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLLLSKKRAQYERAWGQIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 204

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 259 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 313

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362


>gi|184155356|ref|YP_001843696.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
 gi|227515174|ref|ZP_03945223.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
 gi|260662131|ref|ZP_05863027.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
 gi|183226700|dbj|BAG27216.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
 gi|227086506|gb|EEI21818.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
 gi|260553514|gb|EEX26406.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
          Length = 410

 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 94/166 (56%), Gaps = 6/166 (3%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            +L+   +V+G V  +T+ G FI L   +D  V +S +S  +V+ P     +G+ V  +VL
Sbjct: 197  ELAAGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVL 255

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            +V+P  +R+ +++K +        E        VG ++ G +KR+ S+G F+ +    + 
Sbjct: 256  NVDPERERISLSIKQTLPGPWDDIE----EKAAVGTVLTGTVKRLTSFGAFVEV-FPGVE 310

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            GL H+S++S  H+     +  AG++VKVK+L VD E++R+ L +K+
Sbjct: 311  GLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKA 356



 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 1284 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1343
            S ++D YVE    +F  G+ +  +++ +EP   R+ ++ K        ++     S L  
Sbjct: 143  SMITDHYVEDL-NQFK-GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELAA 200

Query: 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1403
            GD+V G++ R+ ++G FI +   +  GL HVSE+S DHVD    +   G++VKVK+L VD
Sbjct: 201  GDVVEGKVARMTNFGAFIDLGGVD--GLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVD 258

Query: 1404 KEKRRISLGMKSS 1416
             E+ RISL +K +
Sbjct: 259  PERERISLSIKQT 271



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
           I++A   E      S++  G VV+GKV  + +FGA +   GGV  L  +  +S   + KP
Sbjct: 182 IVQAQHEEAAKKIFSELAAGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKP 240

Query: 415 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
               +VG E+  +VL V  + +RI+++ K+TL      I    A  T   +  G + ++ 
Sbjct: 241 ADVLEVGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAAVGT---VLTGTVKRLT 297

Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             G FV  + GV+G    S++       P+ +   GQ VK ++++  P  +R+ LS 
Sbjct: 298 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSI 354



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 140/355 (39%), Gaps = 63/355 (17%)

Query: 482 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 538
           +GV+G  P ++L   P    + +  VG  +   ++S I  S + N S+++   R+     
Sbjct: 46  SGVEGVVPANQLSTKPVDNINDVVKVGDELDLVVISKI-GSDKENGSYLLSHRRLEAMKV 104

Query: 539 --------DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 590
                   DD    G  ++  V       +VV    +G+   ++ T+H  + L       
Sbjct: 105 WNEIQKKFDD----GETITATVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK--- 157

Query: 591 SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNII 648
                G E +  ++    S N L+ +   ++ +  +  +    S +    VV G V  + 
Sbjct: 158 -----GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELAAGDVVEGKVARMT 212

Query: 649 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
             G F+  LG + G    S+         +    VGQ V+  +L+V+ E  RI+LS+KQ+
Sbjct: 213 NFGAFID-LGGVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPERERISLSIKQT 271

Query: 709 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 768
                D         +EEK A                   +G+V+ G V     FG  V 
Sbjct: 272 LPGPWDD--------IEEKAA-------------------VGTVLTGTVKRLTSFGAFV- 303

Query: 769 FEEHSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 816
            E    V G      I+H  +A     +E+G  ++  +L+V    + + LS+K +
Sbjct: 304 -EVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKAL 357



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 34/197 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD+V G+++++ +   G  + +G  + G VH +E+           YD     P    + 
Sbjct: 201  GDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEIS----------YDHVD-KPADVLEV 246

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KVL +         + LS++ +L G               P   +E  E  +  
Sbjct: 247  GQEVKVKVLNVDPERE---RISLSIKQTLPG---------------PWDDIE--EKAAVG 286

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+V+P 
Sbjct: 287  TVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPE 346

Query: 1315 SKRVEVTLKTSDSRTAS 1331
             +R+ +++K  +   A 
Sbjct: 347  RQRLGLSIKALEEAPAG 363


>gi|423481483|ref|ZP_17458173.1| ribosomal protein S1 [Bacillus cereus BAG6X1-2]
 gi|401144691|gb|EJQ52218.1| ribosomal protein S1 [Bacillus cereus BAG6X1-2]
          Length = 382

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 182/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI+ G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDILEGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 132/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I++G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDILEGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|403380791|ref|ZP_10922848.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JC66]
          Length = 420

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 187/408 (45%), Gaps = 54/408 (13%)

Query: 1042 VTGYVYKVDNEWALLTISRHLKAQLFILD-SAYEPSELQEFQRRFHIGKAVTGHVLSINK 1100
            V G + KVDNE A + I       + + + SA   SE  E      +G+ +   V+ I+ 
Sbjct: 47   VKGKIVKVDNEQAFVDIGYKYDGIIPLRELSAVSISEASEA---VEVGQELELKVVKIDD 103

Query: 1101 EKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
            EK+ L L         S + VD     D++Q  +   + +  +++ ++ G  GLV+ +G 
Sbjct: 104  EKEKLIL---------SKRLVDSEKAWDDLQAKLESQETIEAKVADVVKG--GLVIDVG- 151

Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
             L G V  + ++   V D             S Y +G+ ++ KV E+ R         LS
Sbjct: 152  -LRGFVPASMVERHFVED------------FSDY-KGRTLRMKVKELDREKNKVI---LS 194

Query: 1219 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
             +  LD   +    ++   ++  G+ +E            G V+ +T  G F+ +   +D
Sbjct: 195  QKDVLDEEYNAKKQEILNSIEI-GQEIE------------GTVQRLTPFGVFVDIG-GID 240

Query: 1279 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1338
              V +S ++  +VE   +    G  V  +VL V+P ++R+ +++K +      Q      
Sbjct: 241  GLVHISEMAWHHVEEASELVKEGDKVKVQVLKVDPENERISLSMKAAQPGPWEQLG---- 296

Query: 1339 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1398
             ++ VG +V G +KR+ ++G F+ I    + GL H+S++S  H+     +   G++V+VK
Sbjct: 297  DHIQVGAVVSGTVKRLVNFGAFVEI-APGVEGLVHISQISHRHIGTPHEVLEEGQEVQVK 355

Query: 1399 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRS 1446
            IL ++ +++R+SL +K +    +A        +E D   + V   N+S
Sbjct: 356  ILDLNPQEKRVSLSIKETEEAPEAPAKPEKGRKEKDNTGDYVAQPNQS 403



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 148/348 (42%), Gaps = 25/348 (7%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           VK    VKGK++ VD+  A V        + PL  +S   I +  +  +VG EL  +V+ 
Sbjct: 41  VKKDDTVKGKIVKVDNEQAFVDIGYKYDGIIPLRELSAVSISEASEAVEVGQELELKVVK 100

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           +  ++  +   K LV S+ A     A+   +      +  + K G  +    G++GF P 
Sbjct: 101 IDDEKEKLILSKRLVDSEKAWDDLQAKLESQETIEAKVADVVKGGLVIDV--GLRGFVPA 158

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---------DL 541
           S +      E  S Y  G+ ++ ++       R  N   + +   + E+         + 
Sbjct: 159 SMVERH-FVEDFSDYK-GRTLRMKVKE---LDREKNKVILSQKDVLDEEYNAKKQEILNS 213

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD- 600
           +++G  + G V  +TP  V V +   G   G +    +A H  H      ++K G +   
Sbjct: 214 IEIGQEIEGTVQRLTPFGVFVDI---GGIDGLVHISEMAWH--HVEEASELVKEGDKVKV 268

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
           Q+L +D E+  + LS K +     +QL     HI   +VV G V  ++  G FV     +
Sbjct: 269 QVLKVDPENERISLSMKAAQPGPWEQL---GDHIQVGAVVSGTVKRLVNFGAFVEIAPGV 325

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +    GQ V+  ILD+N +  R++LS+K++
Sbjct: 326 EGLVHISQISHRHIGTPHEVLEEGQEVQVKILDLNPQEKRVSLSIKET 373



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 139/365 (38%), Gaps = 58/365 (15%)

Query: 466 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 525
           G I K++    FV       G  P  EL      E S    VGQ ++ +++       ++
Sbjct: 49  GKIVKVDNEQAFVDIGYKYDGIIPLRELSAVSISEASEAVEVGQELELKVVKIDDEKEKL 108

Query: 526 NLSFMMKPTRVSEDDL-VKLGS---LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 581
            LS  +  +  + DDL  KL S   + + V DVV    +V+ V  +G+   ++   H  +
Sbjct: 109 ILSKRLVDSEKAWDDLQAKLESQETIEAKVADVVK-GGLVIDVGLRGFVPASMVERHFVE 167

Query: 582 HLE--HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL---INSAQQLPSDASHIHP 636
                    ++  +K          LD E + ++LS K  L    N+ +Q     + I  
Sbjct: 168 DFSDYKGRTLRMKVKE---------LDREKNKVILSQKDVLDEEYNAKKQ--EILNSIEI 216

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
              + G V  +   G FV  +G + G    S+       + S+    G  V+  +L V+ 
Sbjct: 217 GQEIEGTVQRLTPFGVFVD-IGGIDGLVHISEMAWHHVEEASELVKEGDKVKVQVLKVDP 275

Query: 697 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 756
           E  RI+LS+K +     +                 Q   H            +G+V+ G 
Sbjct: 276 ENERISLSMKAAQPGPWE-----------------QLGDH----------IQVGAVVSGT 308

Query: 757 VHESNDFGVVVSFEEHSDVYGF-----ITHHQLAGA--TVESGSVIQAAILDVAKAERLV 809
           V    +FG  V       V G      I+H  +      +E G  +Q  ILD+   E+ V
Sbjct: 309 VKRLVNFGAFVEI--APGVEGLVHISQISHRHIGTPHEVLEEGQEVQVKILDLNPQEKRV 366

Query: 810 DLSLK 814
            LS+K
Sbjct: 367 SLSIK 371


>gi|228990609|ref|ZP_04150574.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
 gi|228769135|gb|EEM17733.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
          Length = 382

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 176/390 (45%), Gaps = 62/390 (15%)

Query: 1038 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1097
            +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA     L 
Sbjct: 17   VGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKASDVVKLD 65

Query: 1098 INKEKKLLRLVLRPFQDG---ISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
             N E K+++L     +D    +S + VD       +Q     G++    +  I++G  GL
Sbjct: 66   QNLELKVIKL-----EDDDLVLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNG--GL 118

Query: 1153 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1212
            VV +G   +      E+  +              +  + Y +G+ +  K++E+ R     
Sbjct: 119  VVDLGVRGFIPASLVEMHYV--------------EDFTDY-KGKTLAVKIVELDRE---K 160

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
              V LS ++ ++              +   K  E I  L    +V+G V+ +T  G F+ 
Sbjct: 161  NRVILSHKAVVEQ-------------ELESKKKEAISSLKEGDVVEGTVQRLTDFGAFVN 207

Query: 1273 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1332
            +   +D  V +S +S   VE P      G+ V  +VLSV+  ++R+ +++K      A  
Sbjct: 208  VGN-VDGLVHISQISHDRVEQPSDVLTQGQSVKVKVLSVDADTQRISLSIKA-----AQP 261

Query: 1333 SEINNLS-NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1391
                N+S  +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   
Sbjct: 262  GPWENVSAEVKAGDIREGIVKRIVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEM 320

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 321  GQEVKVKVLEVHAAEKRISLSIKEAVEENN 350



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G VV+G V  +  FGA V   G V  L  +  +S   + +P      G  +  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GNVDGLVHISQISHDRVEQPSDVLTQGQSVKVKV 242

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   ++RI+++ K          +S+  +A D  I  G + +I   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVSAEVKAGD--IREGIVKRIVTFGAFVEILPGVEG 299

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               S++       P+ +  +GQ VK +++    A +RI+LS 
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSI 342



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 134/294 (45%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + ++ ++    
Sbjct: 127  FIPASLVEMHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVEQELESKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G ++ G VH +++ +  V  P         
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVG-NVDGLVHISQISHDRVEQP--------S 229

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
            D L+   +GQ VK KVL +      T  + LS++++                  PG    
Sbjct: 230  DVLT---QGQSVKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VSAEVKAGDIREGIVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEINNLS-NLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      +++   SQ E  + S      DI+  Q+K++
Sbjct: 327  KVLEVHAAEKRISLSIKEAVEENNETEDYSQYEPTSESATFQFSDIIGEQLKKL 380



 Score = 43.9 bits (102), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 157/383 (40%), Gaps = 36/383 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G VV G V  V+    +V        + P+  ++   I K     K+   L  +V+ ++ 
Sbjct: 18  GDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVKLDQNLELKVIKLED 77

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
             + ++  K  V ++ A +    + T   +    +  I   G  V    GV+GF P S +
Sbjct: 78  DDLVLS--KRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDL--GVRGFIPASLV 133

Query: 494 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----------VK 543
            +    E  + Y  G+ +  +I+       R+ LS       V E +L          +K
Sbjct: 134 EMHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKA----VVEQELESKKKEAISSLK 187

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +V G V  +T     V V   G   G +    ++ D +E  +    V+  G     +
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNV---GNVDGLVHISQISHDRVEQPS---DVLTQGQSVKVK 241

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           +L +D ++  + LS     I +AQ  P +  ++ +    +  G V  I+  G FV  L  
Sbjct: 242 VLSVDADTQRISLS-----IKAAQPGPWENVSAEVKAGDIREGIVKRIVTFGAFVEILPG 296

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++   + +     
Sbjct: 297 VEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAVEENNETEDYS 356

Query: 720 EHFLLEEKIAMLQSSKHNGSELK 742
           ++    E  A  Q S   G +LK
Sbjct: 357 QYEPTSES-ATFQFSDIIGEQLK 378


>gi|374855298|dbj|BAL58159.1| 30S ribosomal protein S1 [uncultured Acidobacteria bacterium]
          Length = 593

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 94/161 (58%), Gaps = 8/161 (4%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            V+G V+ +T  G F+ + + ++  V +S++S   V+ P +    G+ V   +  ++  ++
Sbjct: 411  VRGRVRGITDFGAFVEVEKGIEGLVHVSDISRRRVKHPSEVLKKGQEVEAIIKELDLAAR 470

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            R+ +++K  +     +       N H VGDIV G++ R  S+G F+ +      GLCH+S
Sbjct: 471  RLGLSMKELEPDPWEE-----FFNTHRVGDIVRGKVVRFASFGAFVDVGGVE--GLCHIS 523

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            ELS++HV+  E + + GE++  +IL+++ E+RRI+L  +++
Sbjct: 524  ELSDEHVEKPEDVVQIGEELDFRILRLNPEERRIALSARAA 564



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 160/388 (41%), Gaps = 47/388 (12%)

Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP----GLLLQG 157
           L  ++EG ++   VKS+ D+G  +  G     G L   +++       K     G ++Q 
Sbjct: 230 LSQLEEGYIVEGRVKSLADYGAFVDIG--GIDGLLHITDISWKKIAHPKEVFTVGEVIQV 287

Query: 158 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 217
            +  IDR    + L        K +  +      + L PG  V  +V  + + G  +   
Sbjct: 288 KILKIDRETGRINLGY------KQLWPNPWDTLAERLPPGSRVKGKVTRVTDYGAFVEVE 341

Query: 218 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLL- 271
               G +    L       +     +   +V   +L VD  +R + L+L     +P+ L 
Sbjct: 342 EGIEGLIHASELTWEKRPKHPSKYVSPGDEVLVEVLQVDAQNRRLSLSLRQLQPDPWRLF 401

Query: 272 ---HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
              H+       +V  I D    V V++G+                V +SD++   V+  
Sbjct: 402 AETHSIGARVRGRVRGITDFGAFVEVEKGI-------------EGLVHVSDISRRRVKHP 448

Query: 329 EKKYKEGSCVRVRI----LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 384
            +  K+G  V   I    L  R L GL+   L+   +E    TH   + G +V+GKV+  
Sbjct: 449 SEVLKKGQEVEAIIKELDLAARRL-GLSMKELEPDPWEEFFNTH---RVGDIVRGKVVRF 504

Query: 385 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 442
            SFGA V   GGV+ LC +  +S+  + KP    ++G EL FR+L +  + +RI ++ + 
Sbjct: 505 ASFGAFVDV-GGVEGLCHISELSDEHVEKPEDVVQIGEELDFRILRLNPEERRIALSARA 563

Query: 443 TLVKSKLAILSSYAEATDRLITHGWITK 470
                + A   +  E T R+ + G I +
Sbjct: 564 ARHDREPAY--TIGEDTGRIASLGEIAR 589



 Score = 62.0 bits (149), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 120/240 (50%), Gaps = 26/240 (10%)

Query: 1177 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1236
            P S  D  Q   L  + +G+ ++ +V++++R  +   ++ LS R+ L+   +   + +  
Sbjct: 176  PASQVDLRQVRNLEAW-KGREIEARVIKVNRRQQ---NIVLSRRALLEEEEARRRAQI-- 229

Query: 1237 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1296
                       +  L    IV+G VK++   G F+ +   +D  + ++++S   +  P++
Sbjct: 230  -----------LSQLEEGYIVEGRVKSLADYGAFVDIG-GIDGLLHITDISWKKIAHPKE 277

Query: 1297 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVE 1355
             F +G+++  ++L ++  + R+ +  K         +  + L+  L  G  V G++ RV 
Sbjct: 278  VFTVGEVIQVKILKIDRETGRINLGYKQ-----LWPNPWDTLAERLPPGSRVKGKVTRVT 332

Query: 1356 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIY-RAGEKVKVKILKVDKEKRRISLGMK 1414
             YG F+ +E   + GL H SEL+ +      + Y   G++V V++L+VD + RR+SL ++
Sbjct: 333  DYGAFVEVEE-GIEGLIHASELTWEKRPKHPSKYVSPGDEVLVEVLQVDAQNRRLSLSLR 391



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 3/125 (2%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
            G+ +  RV+ V    + + ++ +       ++     LS L  G IV G++K +  YG F
Sbjct: 193  GREIEARVIKVNRRQQNIVLSRRALLEEEEARRRAQILSQLEEGYIVEGRVKSLADYGAF 252

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1420
            + I   +  GL H++++S   + + + ++  GE ++VKILK+D+E  RI+LG K   + N
Sbjct: 253  VDIGGID--GLLHITDISWKKIAHPKEVFTVGEVIQVKILKIDRETGRINLGYK-QLWPN 309

Query: 1421 DADNL 1425
              D L
Sbjct: 310  PWDTL 314



 Score = 57.8 bits (138), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 140/315 (44%), Gaps = 26/315 (8%)

Query: 317 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG---LATGILKASAFEGLVFTHSDVKP 373
           I+D++ +++   ++ +  G  ++V+IL      G   L    L  + ++ L      + P
Sbjct: 264 ITDISWKKIAHPKEVFTVGEVIQVKILKIDRETGRINLGYKQLWPNPWDTLA---ERLPP 320

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVL 429
           G  VKGKV  V  +GA V+   G++ L    H SE    K    P K    G E++  VL
Sbjct: 321 GSRVKGKVTRVTDYGAFVEVEEGIEGLI---HASELTWEKRPKHPSKYVSPGDEVLVEVL 377

Query: 430 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
            V  +++R++++ ++ L      + +       R+   G +  I   G FV    G++G 
Sbjct: 378 QVDAQNRRLSLSLRQ-LQPDPWRLFAETHSIGARV--RGRVRGITDFGAFVEVEKGIEGL 434

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM-MKPTRVSE-DDLVKLG 545
              S++       PS +   GQ V+  I     A+RR+ LS   ++P    E  +  ++G
Sbjct: 435 VHVSDISRRRVKHPSEVLKKGQEVEAIIKELDLAARRLGLSMKELEPDPWEEFFNTHRVG 494

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLV 604
            +V G V         V V   G  +G      L+D  EH    + V++ G E D ++L 
Sbjct: 495 DIVRGKVVRFASFGAFVDV---GGVEGLCHISELSD--EHVEKPEDVVQIGEELDFRILR 549

Query: 605 LDNESSNLLLSAKYS 619
           L+ E   + LSA+ +
Sbjct: 550 LNPEERRIALSARAA 564



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 157/409 (38%), Gaps = 71/409 (17%)

Query: 601 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           +++ ++    N++LS +  L    A++     S +    +V G V ++ + G FV  +G 
Sbjct: 199 RVIKVNRRQQNIVLSRRALLEEEEARRRAQILSQLEEGYIVEGRVKSLADYGAFVD-IGG 257

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    +     + A   + + VG+ ++  IL ++ ETGRI L  KQ   +  D     
Sbjct: 258 IDGLLHITDISWKKIAHPKEVFTVGEVIQVKILKIDRETGRINLGYKQLWPNPWDT---- 313

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
               L E++                     GS ++GKV    D+G  V  EE   + G I
Sbjct: 314 ----LAERLPP-------------------GSRVKGKVTRVTDYGAFVEVEE--GIEGLI 348

Query: 780 THHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 831
              +L            V  G  +   +L V    R + LSL+ +  D +R         
Sbjct: 349 HASELTWEKRPKHPSKYVSPGDEVLVEVLQVDAQNRRLSLSLRQLQPDPWRLFAETHSIG 408

Query: 832 KKKRKR-EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ--KFPQK 888
            + R R     D G    V   +E                  G   VSD + +  K P +
Sbjct: 409 ARVRGRVRGITDFGAFVEVEKGIE------------------GLVHVSDISRRRVKHPSE 450

Query: 889 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 948
               GQ V A +  L     A RL L +K     E       +  +++ VG +V+ ++  
Sbjct: 451 VLKKGQEVEAIIKEL--DLAARRLGLSMK-----ELEPDPWEEFFNTHRVGDIVRGKVVR 503

Query: 949 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
                  +  G G  G  HI+E++D+     E++    +IG+ +  RI+
Sbjct: 504 FASFGAFVDVG-GVEGLCHISELSDEHVEKPEDV---VQIGEELDFRIL 548



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 158/387 (40%), Gaps = 50/387 (12%)

Query: 346 RHLEGLATGILKASAFEG---LVFTHSD--VKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
           +HLE    G +K S  E    LV+   D   K G  + G++      G  V   GGV+A 
Sbjct: 117 KHLES-PDGYVKLSYAEAQRKLVWAAIDRAFKTGAPITGRITERIKGGLKVNL-GGVEAF 174

Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL----VKSKLAILSS 454
            P   + +   V+  + +K G E+  RV+ V  + + I ++ +  L     + +  ILS 
Sbjct: 175 LPASQV-DLRQVRNLEAWK-GREIEARVIKVNRRQQNIVLSRRALLEEEEARRRAQILSQ 232

Query: 455 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 514
             E     I  G +  +  +G FV    G+ G    +++       P  ++ VG+V++ +
Sbjct: 233 LEEG---YIVEGRVKSLADYGAFVDI-GGIDGLLHITDISWKKIAHPKEVFTVGEVIQVK 288

Query: 515 IMSSIPASRRINLSF-MMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYS 570
           I+     + RINL +  + P     D L +    GS V G V  VT     V V      
Sbjct: 289 ILKIDRETGRINLGYKQLWPN--PWDTLAERLPPGSRVKGKVTRVTDYGAFVEV------ 340

Query: 571 KGTIPTEHLADHLEHATVM---------KSVIKPGYE-FDQLLVLDNESSNLLLSAKYSL 620
                 E   + L HA+ +            + PG E   ++L +D ++  L LS +  L
Sbjct: 341 ------EEGIEGLIHASELTWEKRPKHPSKYVSPGDEVLVEVLQVDAQNRRLSLSLR-QL 393

Query: 621 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 680
                +L ++   I   + V G V  I + G FV     + G    S     +    S+ 
Sbjct: 394 QPDPWRLFAETHSI--GARVRGRVRGITDFGAFVEVEKGIEGLVHVSDISRRRVKHPSEV 451

Query: 681 YYVGQSVRSNILDVNSETGRITLSLKQ 707
              GQ V + I +++    R+ LS+K+
Sbjct: 452 LKKGQEVEAIIKELDLAARRLGLSMKE 478


>gi|418053089|ref|ZP_12691165.1| RNA binding S1 domain protein [Mycobacterium rhodesiae JS60]
 gi|353179450|gb|EHB45010.1| RNA binding S1 domain protein [Mycobacterium rhodesiae JS60]
          Length = 484

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 172/383 (44%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 36   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VSVGDEVEAL 89

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 90   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEALKEKDEAVKGTVIEVVKG--GLIL 140

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 141  DIGLRGFLPASLVEMRRVRDLQPYIGKE---------------IEAKIIELDKNRN---N 182

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    I +G V ++ + G F+ L 
Sbjct: 183  VVLSRRAWLEQTQSEVRSEF-------------LNQLQKGAIRKGVVSSIVNFGAFVDLG 229

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 230  -GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMDRERVSLSLKAT-----QEDP 283

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
              + +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+
Sbjct: 284  WRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVAVGD 342

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
               VK++ +D E+RRISL +K +
Sbjct: 343  DAMVKVIDIDLERRRISLSLKQA 365



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 143/364 (39%), Gaps = 50/364 (13%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 637
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMD 268

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 758 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 810
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 811 LSLK 814
           LSLK
Sbjct: 360 LSLK 363



 Score = 48.1 bits (113), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPSKYGMADSYDEAGNYIFPEGFDADTNEWLEGF 407


>gi|559914|emb|CAA86365.1| 30S ribosomal protein S1 [Mycobacterium leprae]
          Length = 482

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 172/382 (45%), Gaps = 58/382 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + A+   +    +P+E+        +G  V   
Sbjct: 36   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEV------VSVGDEVEAL 89

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 90   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEALKEKDEAVKGIVIEVVKG--GLIL 140

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 141  DIGLRGFLPASLVEMRRVRDLQPYIGKE---------------IEAKIIELDKN---RNN 182

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    I +G V ++ + GC +  S
Sbjct: 183  VVLSRRAWLEQTQSEVRSEF-------------LNQLQKGAIRKGVVSSIVNFGC-VCRS 228

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 229  GGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKAT-----QEDP 283

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
              + +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+
Sbjct: 284  WRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVAVGD 342

Query: 1394 KVKVKILKVDKEKRRISLGMKS 1415
               VK++ +D E+RRISL +K+
Sbjct: 343  DAMVKVIDIDLERRRISLSLKA 364



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IGK +  +++ ++     V ++ +    +T S+     L+ L  G I  G +  + ++G 
Sbjct: 165  IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGC 224

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
                 +  + GL HVSELS  H+D+   + + G +V V++L VD ++ R+SL +K++
Sbjct: 225  --VCRSGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKAT 279



 Score = 47.8 bits (112), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 144/369 (39%), Gaps = 50/369 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + + L +    V G+V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  GC  R  G + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGCVCRS-GGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLD 264

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEE--GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 807 RLVDLSLKT 815
           R + LSLK 
Sbjct: 356 RRISLSLKA 364



 Score = 44.3 bits (103), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 146/346 (42%), Gaps = 31/346 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGIVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +     V      G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGCVCR---SGGVDGLVHVSELSWKHIDHPS---EVVQVGNEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
            G    S+  +       +   VG      ++D++ E  RI+LSLK
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLK 363


>gi|399523751|ref|ZP_10764360.1| 30S ribosomal protein S1 [Atopobium sp. ICM58]
 gi|398375296|gb|EJN52731.1| 30S ribosomal protein S1 [Atopobium sp. ICM58]
          Length = 478

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 184/411 (44%), Gaps = 56/411 (13%)

Query: 1013 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1066
            ++     + +++IGS+  L    D +I     G  V G V KVD++  LL I    K + 
Sbjct: 1    MTTNTPQVAINDIGSEADLIAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEG 58

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
             IL                 +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 59   VILSRELSIKHDVNPDDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 111

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 112  KIEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 165

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 166  -----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 199

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
             +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 200  -LHTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 257

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1365
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 258  EVLDVDMDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 312

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              + GL H+SEL++ HV+  + + + GE+V VK++ +D E+RRISL +K +
Sbjct: 313  -GIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 144/371 (38%), Gaps = 56/371 (15%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G + K++     +      +G     EL +     P  +  VG  ++  ++  
Sbjct: 31  NDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQK 90

Query: 519 IPASRRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 570
                R+ LS           K  +V E+D      +V+G V  V    +++ +  +G+ 
Sbjct: 91  EDKEGRLLLSKKRAQYERAWGKIEKVKEED-----GVVTGTVIEVVKGGLILDIGLRGFL 145

Query: 571 KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPS 629
             ++        +E   V       G E + +++ LD   +N++LS +  L  +  ++ +
Sbjct: 146 PASL--------VEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 197

Query: 630 DASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 688
           +  H +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V 
Sbjct: 198 NFLHTLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 256

Query: 689 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 748
             +LDV+ +  R++LSLK +      A F + H                           
Sbjct: 257 VEVLDVDMDRERVSLSLKATQEDPWQA-FARTH--------------------------A 289

Query: 749 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVA 803
           IG V+ GKV +   FG  V  E+  +    I+     H +L    V+ G  +   ++D+ 
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDID 349

Query: 804 KAERLVDLSLK 814
              R + LSLK
Sbjct: 350 LERRRISLSLK 360



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 33  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKED 92

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLLLSKKRAQYERAWGKIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 204

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 259 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 313

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362


>gi|329942819|ref|ZP_08291598.1| ribosomal protein S1 [Chlamydophila psittaci Cal10]
 gi|449071120|ref|YP_007438200.1| 30S ribosomal protein S1 [Chlamydophila psittaci Mat116]
 gi|328815079|gb|EGF85068.1| ribosomal protein S1 [Chlamydophila psittaci Cal10]
 gi|449039628|gb|AGE75052.1| 30S ribosomal protein S1 [Chlamydophila psittaci Mat116]
          Length = 584

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 73/392 (18%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 272  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KN+              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNVV-------------DPSEVVNKGDEVEAIVL 361

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V+  +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKN 401

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGV 461

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K   S   ++ E         G ++ G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLSSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              IE I   G+ V  K++K+D + +++SL +K
Sbjct: 517  SKIEDIISIGDSVSAKVIKLDPDHKKVSLSVK 548



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDK 278

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  + G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGA--ELVFRVLG 430
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+  E V   + 
Sbjct: 392 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 451

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 191/477 (40%), Gaps = 74/477 (15%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 425
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 539
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INIDRRNVVVSRRELLEAERISKKAEL 213

Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            +Q     +L +D E   + L  K    N  + +        P   + G +  ++  G F
Sbjct: 265 LNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRITGKIVKLLPYGAF 321

Query: 654 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                H     +I          + GS+++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNE 471



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 642  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 701
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 283

Query: 702  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 761
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 316

Query: 762  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 815
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 376

Query: 816  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 875
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 377  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 876  SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 935
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 423  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 475

Query: 936  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 995
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 476  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 532

Query: 996  IIAKSNKPDMKKSFL 1010
            +I     PD KK  L
Sbjct: 533  VIKLD--PDHKKVSL 545



 Score = 41.2 bits (95), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 378 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 435
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 282

Query: 436 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 494
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 495 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 550
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 340 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 397

Query: 551 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 603
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 448

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 662
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 504

Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 505 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 549


>gi|254446646|ref|ZP_05060122.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
 gi|198260954|gb|EDY85262.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
          Length = 549

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 111/199 (55%), Gaps = 11/199 (5%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            V G V+N+T+ G F+ L   +D  V +S++S    +  P +       +   VL V+  +
Sbjct: 358  VHGKVRNITTYGAFVELEEGIDGMVHVSDMSWTRKINHPSEVLKKADEIDAIVLDVDTNN 417

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ + +K    + A     +      +GD+V G I ++ S+G F+ +++ ++ GL H+S
Sbjct: 418  QRISLGMK----QLADDPWEDIDGRFRIGDVVSGTISKITSFGAFVELQD-HIDGLVHIS 472

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
            ++SE+ V+ I+ +   G +V  +++K+D+E+RR+ L +K++ +    D+ Q++ E  + E
Sbjct: 473  QISEERVEKIKDVVDIGTEVTARVIKIDREERRLGLSIKAANY----DDTQLAQETATYE 528

Query: 1436 AIEEVGS-YNRSSLLENSS 1453
             +++ G   N   +L+ ++
Sbjct: 529  NMKDGGDLMNLGDILDQAA 547



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 44/292 (15%)

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
            +N+ T   EG IV GR+   + G  GL+V +G   +               P S  D   
Sbjct: 88   ENIITKCEEGSIVQGRVKGKVKG--GLIVAMGVDAFL--------------PASHID--- 128

Query: 1186 FDPLSGYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
              P    D+  GQ    KVL+I+   +   ++ LS R  ++   ++   DL         
Sbjct: 129  IQPPKNLDQYIGQTYDYKVLKINLERK---NIVLSRRELIEEQRASKRRDL--------- 176

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +E ++P  +V+G VKN+T  G FI L   +D  + ++++S G +  P +    G+ 
Sbjct: 177  ----LERVNPGDVVKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRISHPSEMLKQGEE 231

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            +   ++ +    +RV + LK + S      E    +   VG  V G++  +  YG FI I
Sbjct: 232  IDVMIIEINREKERVSLGLKQTKSNPWQDIE----AKYPVGAKVAGKVVNLVPYGAFIEI 287

Query: 1364 ENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            E   + GL HV+E+S    +     + + G++V+  +L + K++ +ISLG++
Sbjct: 288  EE-GVEGLVHVTEMSWTKRITKPSELLKVGDEVEAVVLGIQKDEEKISLGIR 338



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 146/368 (39%), Gaps = 42/368 (11%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           V PG VVKG V  +  FGA +    G+  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 180 VNPGDVVKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRISHPSEMLKQGEEIDVMIIE 238

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           +  + +R+++  K+T       I + Y          G +  +  +G F+    GV+G  
Sbjct: 239 INREKERVSLGLKQTKSNPWQDIEAKYPVGAK---VAGKVVNLVPYGAFIEIEEGVEGLV 295

Query: 489 PRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLV---- 542
             +E+       +PS +  VG  V+  ++       +I+L    + P      D+V    
Sbjct: 296 HVTEMSWTKRITKPSELLKVGDEVEAVVLGIQKDEEKISLGIRQLDPNPW---DMVVHNY 352

Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 597
            +G+ V G V  +T     V +      +G     H++D      + H +    V+K   
Sbjct: 353 PVGAHVHGKVRNITTYGAFVEL-----EEGIDGMVHVSDMSWTRKINHPS---EVLKKAD 404

Query: 598 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGC 652
           E D  +VLD +++N  +S         +QL  D             VV G +  I   G 
Sbjct: 405 EIDA-IVLDVDTNNQRISL------GMKQLADDPWEDIDGRFRIGDVVSGTISKITSFGA 457

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           FV     + G    S+  + +   +     +G  V + ++ ++ E  R+ LS+K    + 
Sbjct: 458 FVELQDHIDGLVHISQISEERVEKIKDVVDIGTEVTARVIKIDREERRLGLSIK--AANY 515

Query: 713 TDASFMQE 720
            D    QE
Sbjct: 516 DDTQLAQE 523



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 105/475 (22%), Positives = 186/475 (39%), Gaps = 84/475 (17%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGV 431
           G +V+G+V      G IV    GV A  P  H+     ++P K     +G    ++VL +
Sbjct: 97  GSIVQGRVKGKVKGGLIVAM--GVDAFLPASHID----IQPPKNLDQYIGQTYDYKVLKI 150

Query: 432 KSKRITVT-HKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQG 486
             +R  +   ++ L++ + A  S   +  +R+    +  G +  I   G F+   +G+ G
Sbjct: 151 NLERKNIVLSRRELIEEQRA--SKRRDLLERVNPGDVVKGVVKNITDFGAFIDL-DGMDG 207

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK--L 544
               +++       PS M   G+ +   I+       R++L      +   +D   K  +
Sbjct: 208 LLHITDMSWGRISHPSEMLKQGEEIDVMIIEINREKERVSLGLKQTKSNPWQDIEAKYPV 267

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM---KSVIKPGYEFDQ 601
           G+ V+G V  + P    + +            E   + L H T M   K + KP     +
Sbjct: 268 GAKVAGKVVNLVPYGAFIEI------------EEGVEGLVHVTEMSWTKRITKPS----E 311

Query: 602 LLVLDNESSNLLLS-----AKYSL-INSAQQLPSD-ASHIHP-NSVVHGYVCNIIETGCF 653
           LL + +E   ++L       K SL I      P D   H +P  + VHG V NI   G F
Sbjct: 312 LLKVGDEVEAVVLGIQKDEEKISLGIRQLDPNPWDMVVHNYPVGAHVHGKVRNITTYGAF 371

Query: 654 VRFLGRLTGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           V     + G    S     ++ +  S+       + + +LDV++   RI+L +KQ     
Sbjct: 372 VELEEGIDGMVHVSDMSWTRKINHPSEVLKKADEIDAIVLDVDTNNQRISLGMKQLADDP 431

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG-FIIGSVIEGKVHESNDFGVVVSFEE 771
            +                             ++G F IG V+ G + +   FG  V  ++
Sbjct: 432 WED----------------------------IDGRFRIGDVVSGTISKITSFGAFVELQD 463

Query: 772 HSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFID 819
           H D  G +   Q++   VE        G+ + A ++ + + ER + LS+K    D
Sbjct: 464 HID--GLVHISQISEERVEKIKDVVDIGTEVTARVIKIDREERRLGLSIKAANYD 516



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 86/162 (53%), Gaps = 8/162 (4%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK-EFPIGKLVAGRVLSVEPL 1314
            IVQG VK     G  + +   +DA +  S++    ++ P+  +  IG+    +VL +   
Sbjct: 99   IVQGRVKGKVKGGLIVAMG--VDAFLPASHID---IQPPKNLDQYIGQTYDYKVLKINLE 153

Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
             K + ++ +       +    + L  ++ GD+V G +K +  +G FI ++  +  GL H+
Sbjct: 154  RKNIVLSRRELIEEQRASKRRDLLERVNPGDVVKGVVKNITDFGAFIDLDGMD--GLLHI 211

Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +++S   + +   + + GE++ V I+++++EK R+SLG+K +
Sbjct: 212  TDMSWGRISHPSEMLKQGEEIDVMIIEINREKERVSLGLKQT 253



 Score = 44.3 bits (103), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 116/566 (20%), Positives = 229/566 (40%), Gaps = 97/566 (17%)

Query: 453 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM--YHVGQV 510
           +S+ +  +  I  G IT+I ++   V           +SE GL PG E S +    +G+ 
Sbjct: 8   TSFDQLKEGSIVKGTITEIRQNEVVVDI-------GGKSE-GLVPGQEFSDLGELQIGEE 59

Query: 511 VKCRIMSSIPASRRINLSFMMKPTRVSEDDLV---KLGSLVSGVVDVVTPNAVVVYVIAK 567
           ++  +           LSF     + + ++++   + GS+V G V       ++V +   
Sbjct: 60  IEVFLEKLEDKEGNPLLSFDKAEQKKNWENIITKCEEGSIVQGRVKGKVKGGLIVAMGVD 119

Query: 568 GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS--AQ 625
            +    +P  H+   ++    +   I   Y++ ++L ++ E  N++LS +  LI    A 
Sbjct: 120 AF----LPASHI--DIQPPKNLDQYIGQTYDY-KVLKINLERKNIVLS-RRELIEEQRAS 171

Query: 626 QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 685
           +       ++P  VV G V NI + G F+   G + G    +    G+ +  S+    G+
Sbjct: 172 KRRDLLERVNPGDVVKGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRISHPSEMLKQGE 230

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            +   I+++N E  R++L LKQ+                       +S+     E K   
Sbjct: 231 EIDVMIIEINREKERVSLGLKQT-----------------------KSNPWQDIEAK--- 264

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT--------VESGSVIQA 797
            + +G+ + GKV     +G  +  EE   V G +   +++           ++ G  ++A
Sbjct: 265 -YPVGAKVAGKVVNLVPYGAFIEIEEG--VEGLVHVTEMSWTKRITKPSELLKVGDEVEA 321

Query: 798 AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ-TVNAIVEIV 856
            +L + K E  + L +        R+ + N              D+ VH   V A V   
Sbjct: 322 VVLGIQKDEEKISLGI--------RQLDPN------------PWDMVVHNYPVGAHVHGK 361

Query: 857 KENYLVL-SLPEYNHSI-GYASVSDYN-TQKF--PQKQFLNGQSVIATVMALPSSSTAGR 911
             N     +  E    I G   VSD + T+K   P +       + A V+ + +++   R
Sbjct: 362 VRNITTYGAFVELEEGIDGMVHVSDMSWTRKINHPSEVLKKADEIDAIVLDVDTNNQ--R 419

Query: 912 LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 971
           + L +K +++              + +G +V   I++I      ++      G +HI+++
Sbjct: 420 ISLGMKQLADDPWEDI-----DGRFRIGDVVSGTISKITSFGAFVELQDHIDGLVHISQI 474

Query: 972 NDDKSNVVENLFSNFKIGQTVTARII 997
           ++++   VE +     IG  VTAR+I
Sbjct: 475 SEER---VEKIKDVVDIGTEVTARVI 497


>gi|407278428|ref|ZP_11106898.1| 30S ribosomal protein S1 [Rhodococcus sp. P14]
          Length = 487

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 798 AILDVAKAERLVDLSLK 814
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 47.8 bits (112), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 375

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 376 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|390629414|ref|ZP_10257409.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
 gi|390485318|emb|CCF29757.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
          Length = 410

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 139/280 (49%), Gaps = 38/280 (13%)

Query: 1136 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1195
            DIV   +++++ G  GLVV +   + G V  + ++N  V D            L+ Y +G
Sbjct: 114  DIVEAPVTQVVKG--GLVVDV-EGVRGFVPASMIENRFVQD------------LNQY-KG 157

Query: 1196 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
            Q ++ K++EI+        + LS R  L+   S   S +               +LS   
Sbjct: 158  QTIRAKIIEINAA---DSRLILSRRDVLNEERSEALSRV-------------FNELSVGD 201

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +V+G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  
Sbjct: 202  VVEGKVARMTNFGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPEK 260

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ +++K     T         +    G ++ G +KRV  +G F+ +    + GL HVS
Sbjct: 261  ERISLSIKA----TQPGPWEAAAAEAPEGTVLEGTVKRVVDFGAFVEV-FPGVEGLVHVS 315

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            ++S  H+ N   + +AG+KVKVK+L+V+ +K+R+SL +K+
Sbjct: 316  QISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSLSIKA 355



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 17/248 (6%)

Query: 288 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 347
           ++ V +V +G GL++D+         +V  S +    V+ L  +YK G  +R +I+    
Sbjct: 117 EAPVTQVVKG-GLVVDVEGVR----GFVPASMIENRFVQDL-NQYK-GQTIRAKIIEINA 169

Query: 348 LEGLAT----GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 403
            +         +L     E L    +++  G VV+GKV  + +FGA +   GGV  L  +
Sbjct: 170 ADSRLILSRRDVLNEERSEALSRVFNELSVGDVVEGKVARMTNFGAFIDL-GGVDGLVHV 228

Query: 404 PHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDR 461
             +S   + +P     VG E+  +VLG+  + +RI+++ K T      A  +   E T  
Sbjct: 229 SEISHERVSQPSDVLSVGEEVKVKVLGLDPEKERISLSIKATQPGPWEAAAAEAPEGT-- 286

Query: 462 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 521
            +  G + ++   G FV  + GV+G    S++       PS +   G  VK +++   P 
Sbjct: 287 -VLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKVLEVNPD 345

Query: 522 SRRINLSF 529
            +R++LS 
Sbjct: 346 KQRLSLSI 353



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
            G+ +  +++ +     R+ ++ +   ++ R+ + S + N   L VGD+V G++ R+ ++G
Sbjct: 157  GQTIRAKIIEINAADSRLILSRRDVLNEERSEALSRVFN--ELSVGDVVEGKVARMTNFG 214

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             FI +   +  GL HVSE+S + V     +   GE+VKVK+L +D EK RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPEKERISLSIKAT 270



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 30/230 (13%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL-ADHLEHAT-VMKSVIKPGYEF 599
           VK+G +V G V  +     V+  I     +G IP   L AD   +   ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELTADRDANVNDLVKVGDVLDLVV 77

Query: 600 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
              +  D E  + LLS +   + + +     AS  + + +V   V  +++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEG- 134

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS +             
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRD------------ 180

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
              L EE+   L          +      +G V+EGKV    +FG  +  
Sbjct: 181 --VLNEERSEALS---------RVFNELSVGDVVEGKVARMTNFGAFIDL 219


>gi|302533839|ref|ZP_07286181.1| ribosomal protein S1 [Streptomyces sp. C]
 gi|302442734|gb|EFL14550.1| ribosomal protein S1 [Streptomyces sp. C]
          Length = 504

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 187/419 (44%), Gaps = 66/419 (15%)

Query: 1017 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1066
            P  + V++IG+   F    D +I     G  V G + KVD +  LL I       + ++ 
Sbjct: 12   PPQVAVNDIGNAEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRE 71

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              +    +P+E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 72   LSIKHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWG 118

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
             ++    E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 119  TIEKIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE---- 172

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHL 1245
                       ++ K++E+ +      +V LS R+ L+   S    + L+T         
Sbjct: 173  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------- 209

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
                 L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V 
Sbjct: 210  -----LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVT 263

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1364
              VL V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + 
Sbjct: 264  VEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV- 317

Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
            +  + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 318  DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 376



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 40  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 99

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 100 KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 155

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 156 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 211

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 212 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 265

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 266 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 322

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 323 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 372


>gi|423397689|ref|ZP_17374890.1| ribosomal protein S1 [Bacillus cereus BAG2X1-1]
 gi|401649735|gb|EJS67313.1| ribosomal protein S1 [Bacillus cereus BAG2X1-1]
          Length = 382

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVALQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    + VGDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKVGDIREGVVKRLATFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   ++RI+++ K          ++   +  D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKVGD--IREGVVKRLATFGAFVEILPGVEG 299

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 539
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 134/294 (45%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++  G     + ++            
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAAQPGPWENVAGEI------------ 271

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            K+ D+      +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 272  KVGDIR-----EGVVKRLATFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|452955266|gb|EME60665.1| 30S ribosomal protein S1 [Rhodococcus ruber BKS 20-38]
          Length = 487

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 798 AILDVAKAERLVDLSLK 814
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 47.8 bits (112), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 375

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 376 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|62185082|ref|YP_219867.1| 30S ribosomal protein S1 [Chlamydophila abortus S26/3]
 gi|62148149|emb|CAH63906.1| 30s ribosomal protein S1 [Chlamydophila abortus S26/3]
          Length = 581

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 73/392 (18%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 272  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KN+              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNVV-------------DPSEVVNKGDEVEAIVL 361

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V+  +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKN 401

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGV 461

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K   S   ++ E         G ++ G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLSSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              IE I   G+ V  K++K+D + +++SL +K
Sbjct: 517  SKIEDIISIGDSVSAKVIKLDPDHKKVSLSVK 548



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDK 278

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  + G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGA--ELVFRVLG 430
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+  E V   + 
Sbjct: 392 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 451

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 191/477 (40%), Gaps = 74/477 (15%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 425
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 539
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INIDRRNVVVSRRELLEAERISKKAEL 213

Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            +Q     +L +D E   + L  K    N  + +        P   + G +  ++  G F
Sbjct: 265 LNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRITGKIVKLLPYGAF 321

Query: 654 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                H     +I          + GS+++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNE 471



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 642  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 701
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 283

Query: 702  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 761
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 316

Query: 762  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 815
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 376

Query: 816  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 875
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 377  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 876  SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 935
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 423  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 475

Query: 936  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 995
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 476  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 532

Query: 996  IIAKSNKPDMKKSFL 1010
            +I     PD KK  L
Sbjct: 533  VIKLD--PDHKKVSL 545



 Score = 41.2 bits (95), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 378 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 435
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 282

Query: 436 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 494
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 495 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 550
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 340 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 397

Query: 551 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 603
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 448

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 662
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 504

Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 505 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 549


>gi|42519016|ref|NP_964946.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533]
 gi|385826005|ref|YP_005862347.1| 30S ribosomal protein S1 [Lactobacillus johnsonii DPC 6026]
 gi|41583303|gb|AAS08912.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533]
 gi|329667449|gb|AEB93397.1| 30S ribosomal protein S1 [Lactobacillus johnsonii DPC 6026]
          Length = 400

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 10/175 (5%)

Query: 1246 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +V+ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHVDKPSDVLKAG 244

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G FI
Sbjct: 245  QDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFI 300

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             + +  + GL HVSE++  HVD    + + G+ VKVK+L VD   RRISL +K +
Sbjct: 301  EVAD-GIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 416
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   + KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHVDKPSD 239

Query: 417 KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 470
             K G ++  +V+G+   R  I+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDRHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 471 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           +   G F+   +G+QG    SE+      +PS +  VGQ VK +++S  P+ RRI+LS 
Sbjct: 293 LTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSI 351



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 10/175 (5%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            K LEK+        V+G V      G  + + +R      L+SN    YV S  K + IG
Sbjct: 103  KELEKV--FEEGKTVEGTVTGAVRGGLLVDVGTRGFLPASLISNR---YV-SDLKPY-IG 155

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            K +  ++  ++P   R+ ++ K    +   ++  N  S L VGD V G++ R+  +G F+
Sbjct: 156  KKMNLKITEIDPNKNRLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFV 215

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             +   +  GL H+SE+S  HVD    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 216  DVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQT 268



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 52/244 (21%)

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
            +N+ + +  GD V G++S+ L+G G  V   G  + G VH +E+    V  P        
Sbjct: 189  ENVASQLVVGDTVEGKVSR-LTGFGAFVDVGG--VDGLVHISEISYKHVDKP-------- 237

Query: 1186 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1245
             D L     GQ VK KV+ I         + LS++ +L                 P    
Sbjct: 238  SDVLKA---GQDVKVKVIGIDDD---RHRISLSIKQTL-----------------PSPFE 274

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E  E L    I++G VK +TS G FI ++  +   V +S +++ +V+ P     +G+ V 
Sbjct: 275  EATEGLHEGDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVK 334

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-----------------NLSNLHVGDIVI 1348
             +VLSV+P  +R+ +++K +D   A++SE N                 N +   +GDI+ 
Sbjct: 335  VKVLSVDPSDRRISLSIKQADP-NAAKSENNSRPRRRQDSVADKYMNDNDNGFALGDIIG 393

Query: 1349 GQIK 1352
             Q+K
Sbjct: 394  DQLK 397



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGDKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 523
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 524 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R+ LS   +++  R    + V     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             ++ G V  +   G F+     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDP 342

Query: 697 ETGRITLSLKQS 708
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354


>gi|218133764|ref|ZP_03462568.1| hypothetical protein BACPEC_01633 [[Bacteroides] pectinophilus ATCC
            43243]
 gi|217991139|gb|EEC57145.1| putative ribosomal protein S1 [[Bacteroides] pectinophilus ATCC
            43243]
          Length = 365

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 184/402 (45%), Gaps = 81/402 (20%)

Query: 1078 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT--VDISNDNMQTFIHEG 1135
            L+E  +  H G+ V G V+S+ +++ +L +  +   DGI  ++   +  N +++T + EG
Sbjct: 10   LEESFKTIHTGEVVDGTVISVKEDEIVLNIGYKA--DGIITRSEYTNKPNVDLRTVVSEG 67

Query: 1136 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1195
            D +  ++ K+  G             G+V  T  + +         +EG       Y+  
Sbjct: 68   DTMKAKVLKVNDG------------DGQVLLTYRRLVA--------EEGNKKLEEAYNNK 107

Query: 1196 QFVKCKVLEISRTVRGTFHVELS-----LRSSLDGMSSTNSSDLS-----------TDVD 1239
            + +  KV    + + G   V +      + +SL  +S T   DL+           T+ +
Sbjct: 108  EVITAKV---DKAIPGGLSVVIDEARVFIPASL--ISDTYEKDLTKFEGQEVSFVITEYN 162

Query: 1240 TP-------------GKHLEKIEDLSPNM----IVQGYVKNVTSKGCFIMLSRKLDAKVL 1282
                            K  E+ E L  ++     ++G VKNVT  G FI L   +D  + 
Sbjct: 163  PKKRRIIGDCKQLILAKKAEQAEKLLASIKEGDTIEGTVKNVTDFGAFIDLG-GVDGLLH 221

Query: 1283 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1342
            +S +S G  E+P+K F +G  V   V  +     ++ ++LK  D    + +         
Sbjct: 222  ISEMSWGRTENPKKVFKVGDSVKAFVKEIN--GSKIALSLKYPDQNPWTDAP----EKYA 275

Query: 1343 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1402
            VG++V G++ R+  +G F+ +E T +  L HVS+++ +HVD    + + G++++ K++ +
Sbjct: 276  VGNVVKGKVARMTDFGAFVELE-TGVDALLHVSQIALEHVDKPSDVLKIGQEIEAKVVDL 334

Query: 1403 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN 1444
            + E+++ISL +K +  K++A          SDEA EEV   N
Sbjct: 335  NVEEKKISLSIK-ALLKDNA----------SDEAAEEVSEEN 365



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 143/341 (41%), Gaps = 23/341 (6%)

Query: 197 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 256
           G +V   V S+ E+ ++L+      G +      N  P  + +   ++   + A++L V+
Sbjct: 20  GEVVDGTVISVKEDEIVLNIGYKADGIITRSEYTNK-PNVDLRTVVSEGDTMKAKVLKVN 78

Query: 257 PTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVV--RVDRGL--GLLLDIPSTPVSTP 312
                V LT    +    A   + K+ + Y+  +V+  +VD+ +  GL + I    V  P
Sbjct: 79  DGDGQVLLTYRRLV----AEEGNKKLEEAYNNKEVITAKVDKAIPGGLSVVIDEARVFIP 134

Query: 313 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLEGLATGILKASAFEGLVFTH 368
           A + ISD  E+++ K E     G  V   I  +    R + G    ++ A   E      
Sbjct: 135 ASL-ISDTYEKDLTKFE-----GQEVSFVITEYNPKKRRIIGDCKQLILAKKAEQAEKLL 188

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           + +K G  ++G V  V  FGA +   GGV  L  +  MS      P K FKVG  +   V
Sbjct: 189 ASIKEGDTIEGTVKNVTDFGAFIDL-GGVDGLLHISEMSWGRTENPKKVFKVGDSVKAFV 247

Query: 429 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
             +   +I ++ K             YA      +  G + ++   G FV    GV    
Sbjct: 248 KEINGSKIALSLKYPDQNPWTDAPEKYAVGN---VVKGKVARMTDFGAFVELETGVDALL 304

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             S++ L+   +PS +  +GQ ++ +++      ++I+LS 
Sbjct: 305 HVSQIALEHVDKPSDVLKIGQEIEAKVVDLNVEEKKISLSI 345



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGV 431
           G VVKGKV  +  FGA V+   GV AL  +  ++   + KP    K+G E+  +V  L V
Sbjct: 277 GNVVKGKVARMTDFGAFVELETGVDALLHVSQIALEHVDKPSDVLKIGQEIEAKVVDLNV 336

Query: 432 KSKRITVTHKKTL 444
           + K+I+++ K  L
Sbjct: 337 EEKKISLSIKALL 349


>gi|378718135|ref|YP_005283024.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans VH2]
 gi|375752838|gb|AFA73658.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans VH2]
          Length = 527

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 41   TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 100

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 101  SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 147

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 148  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 204

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 205  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 238

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 239  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 293

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 294  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 348

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 349  V-DEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 401



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 61  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 120

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 121 EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 180

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 181 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 232

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 233 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 291

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 292 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 327

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  +E   + G +   +LA   VE        G     
Sbjct: 328 ---AIGQIVPGKVTKLVPFGAFVRVDE--GIEGLVHISELAERHVEVPDQVVAVGDDAMV 382

Query: 798 AILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            ++D+    R + LSLK    D   E + ++
Sbjct: 383 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 413



 Score = 47.8 bits (112), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 72  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 131

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 132 KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 187

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 188 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 243

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 244 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 297

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 298 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 353

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 354 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 408

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 409 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 443


>gi|418327907|ref|ZP_12939039.1| 30S ribosomal protein S1 [Staphylococcus epidermidis 14.1.R1.SE]
 gi|365232466|gb|EHM73462.1| 30S ribosomal protein S1 [Staphylococcus epidermidis 14.1.R1.SE]
          Length = 392

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 106/193 (54%), Gaps = 11/193 (5%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            ++ L+   ++ G V  +T+ G FI +   +D  V +S LS  +V++PE+   +G+ V  +
Sbjct: 188  LDSLNEGDVIDGKVARLTNFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSVGEAVIVK 246

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            V SVE  S+R+ +++K     T      N     H  D++ G + R+ ++G F+ I   +
Sbjct: 247  VKSVEKDSERISLSIKD----TLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEIA-PS 301

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK-----NDA 1422
            + GL H+SE+   H+ +   +   G++V VKIL +D++  RISL +K++  K     +DA
Sbjct: 302  VQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENVIESDA 361

Query: 1423 DNLQMSSEEESDE 1435
               Q   E+++DE
Sbjct: 362  STTQSYLEDDNDE 374



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 10/170 (5%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
            E L+ + +++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLNNDEVIEAEVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +V  ++P + RV ++ K  +       + + L +L+ GD++ G++ R+ ++G FI I   
Sbjct: 157  KVEELDPENNRVILSRKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGV 216

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  GL HVSELS +HV   E +   GE V VK+  V+K+  RISL +K +
Sbjct: 217  D--GLVHVSELSHEHVQTPEEVVSVGEAVIVKVKSVEKDSERISLSIKDT 264



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 152/375 (40%), Gaps = 38/375 (10%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQKVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 544 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239

Query: 596 GYEFDQLLV----LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 651
           G   + ++V    ++ +S  + LS K +L    + +       H + V+ G V  +   G
Sbjct: 240 G---EAVIVKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFG 293

Query: 652 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
            FV     + G    S+         ++    GQ V   IL ++ +  RI+LS+K +   
Sbjct: 294 AFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPK 353

Query: 712 ----STDASFMQEHF 722
                +DAS  Q + 
Sbjct: 354 ENVIESDASTTQSYL 368



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 24/251 (9%)

Query: 288 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 340
           +++V  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 341 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
            IL  + +E L     KAS  + L         G V+ GKV  + +FGA +   GGV  L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219

Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 458
             +  +S   +  P +   VG  ++ +V  V+  S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVIVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
               +  G + ++   G FV     VQG    SE+       P+ +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336

Query: 519 IPASRRINLSF 529
              + RI+LS 
Sbjct: 337 DEDNERISLSI 347



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 111/289 (38%), Gaps = 55/289 (19%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQKVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEVEA 69

Query: 602 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 652
            +     D E+     +  Y L  S +QL ++ S+      ++ + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGL 123

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K      
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 772
            DA          +K ++L S                G VI+GKV    +FG  +     
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFGAFIDI--- 213

Query: 773 SDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
             V G +        H Q     V  G  +   +  V K    + LS+K
Sbjct: 214 GGVDGLVHVSELSHEHVQTPEEVVSVGEAVIVKVKSVEKDSERISLSIK 262


>gi|424825132|ref|ZP_18250119.1| 30S ribosomal protein S1 [Chlamydophila abortus LLG]
 gi|333410231|gb|EGK69218.1| 30S ribosomal protein S1 [Chlamydophila abortus LLG]
          Length = 581

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 177/389 (45%), Gaps = 67/389 (17%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 272  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
                G  ++I   + G +H +E+           + +   DP    ++G  V+  VL I 
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEM----------SWVKNVVDPSEVVNKGDEVEAIVLSIQ 364

Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1266
            +        ++SL     G+  T  +        P  ++E  E     + V+  +KN+T+
Sbjct: 365  KD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKNLTN 404

Query: 1267 KGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
             G F+ L   ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +K  
Sbjct: 405  YGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQL 464

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
             S   ++ E         G ++ G + ++ ++G F+ ++N  + GL HVSELSE     I
Sbjct: 465  SSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFSKI 519

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            E I   G+ V  K++K+D + +++SL +K
Sbjct: 520  EDIISIGDSVSAKVIKLDPDHKKVSLSVK 548



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDK 278

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  + G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGA--ELVFRVLG 430
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+  E V   + 
Sbjct: 392 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 451

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 191/477 (40%), Gaps = 74/477 (15%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 425
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 539
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INIDRRNVVVSRRELLEAERISKKAEL 213

Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            +Q     +L +D E   + L  K    N  + +        P   + G +  ++  G F
Sbjct: 265 LNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRITGKIVKLLPYGAF 321

Query: 654 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                H     +I          + GS+++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNE 471



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 642  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 701
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 283

Query: 702  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 761
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 316

Query: 762  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 815
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 376

Query: 816  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 875
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 377  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 876  SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 935
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 423  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 475

Query: 936  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 995
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 476  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 532

Query: 996  IIAKSNKPDMKKSFL 1010
            +I     PD KK  L
Sbjct: 533  VIKLD--PDHKKVSL 545



 Score = 41.2 bits (95), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 378 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 435
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 282

Query: 436 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 494
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 495 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 550
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 340 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 397

Query: 551 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 603
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 448

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 662
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 504

Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 505 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 549


>gi|415885333|ref|ZP_11547261.1| 30S ribosomal protein S1 [Bacillus methanolicus MGA3]
 gi|387591002|gb|EIJ83321.1| 30S ribosomal protein S1 [Bacillus methanolicus MGA3]
          Length = 379

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 176/385 (45%), Gaps = 53/385 (13%)

Query: 1032 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1091
            E  +  +G +V G V KV+ +  L ++          LD     SEL       H+ KA 
Sbjct: 9    EVTNFQVGDKVKGKVIKVEEKHVLASVENSK------LDGIIPISELS----SLHVEKA- 57

Query: 1092 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGV 1149
               V+++  E +L  + +      +S + +D     D+++     G+I    +  ++ G 
Sbjct: 58   -EDVVTVGDELELEVIKVEEEALILSKRKIDAEKAWDDLEKKFESGEIFEAEVKDVVKG- 115

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
             GLVV +G  + G V            P S  ++   +  S Y +G+ +  K++E+ +  
Sbjct: 116  -GLVVDLG--VRGFV------------PASLVEDHFVEDFSDY-KGKPLTFKIVELDKEK 159

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
                   LS R+ ++         L             +E L P  +++G ++ +T  G 
Sbjct: 160  NRLI---LSHRAVVEEEKIRQKQSL-------------LESLQPGQVLEGTIQRITDFGA 203

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ +   +D  V +S LS  +VE P      G+ V  +VLSV+  + R+ +++K     T
Sbjct: 204  FVDIG-GVDGLVHISQLSHQHVEKPSDVVEEGQKVNVKVLSVDRDNNRISLSIK----ET 258

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
                  N       G ++ G +KR+ SYG F+ +  + + GL H+S++S  H+     + 
Sbjct: 259  LPGPWTNISEKAPKGSVLEGTVKRIVSYGAFVEV-FSGVEGLVHISQISHKHIGTPHEVL 317

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMK 1414
            + G+KV+VK+L V++E++R+SL +K
Sbjct: 318  KEGQKVQVKVLDVNEEQQRLSLSIK 342



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
            L +L  G ++ G I+R+  +G F+ I   +  GL H+S+LS  HV+    +   G+KV V
Sbjct: 182  LESLQPGQVLEGTIQRITDFGAFVDIGGVD--GLVHISQLSHQHVEKPSDVVEEGQKVNV 239

Query: 1398 KILKVDKEKRRISLGMKSS 1416
            K+L VD++  RISL +K +
Sbjct: 240  KVLSVDRDNNRISLSIKET 258



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++PG V++G +  +  FGA V   GGV  L  +  +S   + KP    + G ++  +VL 
Sbjct: 185 LQPGQVLEGTIQRITDFGAFVDI-GGVDGLVHISQLSHQHVEKPSDVVEEGQKVNVKVLS 243

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V   + RI+++ K+TL      I     + +   +  G + +I  +G FV  ++GV+G  
Sbjct: 244 VDRDNNRISLSIKETLPGPWTNISEKAPKGS---VLEGTVKRIVSYGAFVEVFSGVEGLV 300

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             S++       P  +   GQ V+ +++      +R++LS 
Sbjct: 301 HISQISHKHIGTPHEVLKEGQKVQVKVLDVNEEQQRLSLSI 341



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 22/342 (6%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 432
           G  VKGKVI V+    +       +  + P+  +S   + K      VG EL   V+ V+
Sbjct: 16  GDKVKGKVIKVEEKHVLASVENSKLDGIIPISELSSLHVEKAEDVVTVGDELELEVIKVE 75

Query: 433 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 492
            + + ++ +K   +     L    E+ +  I    +  + K G  V    GV+GF P S 
Sbjct: 76  EEALILSKRKIDAEKAWDDLEKKFESGE--IFEAEVKDVVKGGLVVDL--GVRGFVPAS- 130

Query: 493 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED----DLVKLGS 546
           L  D   E  S Y  G+ +  +I+       R+ LS   +++  ++ +     + ++ G 
Sbjct: 131 LVEDHFVEDFSDYK-GKPLTFKIVELDKEKNRLILSHRAVVEEEKIRQKQSLLESLQPGQ 189

Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVL 605
           ++ G +  +T     V +   G   G +    L+   +H      V++ G + + ++L +
Sbjct: 190 VLEGTIQRITDFGAFVDI---GGVDGLVHISQLSH--QHVEKPSDVVEEGQKVNVKVLSV 244

Query: 606 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 665
           D +++ + LS K +L      +   A      SV+ G V  I+  G FV     + G   
Sbjct: 245 DRDNNRISLSIKETLPGPWTNISEKAP---KGSVLEGTVKRIVSYGAFVEVFSGVEGLVH 301

Query: 666 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            S+          +    GQ V+  +LDVN E  R++LS+K+
Sbjct: 302 ISQISHKHIGTPHEVLKEGQKVQVKVLDVNEEQQRLSLSIKE 343



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 158/383 (41%), Gaps = 78/383 (20%)

Query: 984  SNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD--VSIGQR 1041
            +NF++G  V  ++I    K  +      E S    ++ +SE+ S L  E+ +  V++G  
Sbjct: 11   TNFQVGDKVKGKVIKVEEKHVLASV---ENSKLDGIIPISELSS-LHVEKAEDVVTVGDE 66

Query: 1042 VTGYVYKVDNEWALLTISRHLKAQLFI--LDSAYEPSELQEFQ---------------RR 1084
            +   V KV+ E AL+   R + A+     L+  +E  E+ E +               R 
Sbjct: 67   LELEVIKVEEE-ALILSKRKIDAEKAWDDLEKKFESGEIFEAEVKDVVKGGLVVDLGVRG 125

Query: 1085 F----------------HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1128
            F                + GK +T  ++ ++KEK  L L  R     + ++ +      +
Sbjct: 126  FVPASLVEDHFVEDFSDYKGKPLTFKIVELDKEKNRLILSHRAV---VEEEKIRQKQSLL 182

Query: 1129 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1188
            ++ +  G ++ G I +I     G  V IG  + G VH ++L +  V  P    +EGQ   
Sbjct: 183  ES-LQPGQVLEGTIQRITDF--GAFVDIGG-VDGLVHISQLSHQHVEKPSDVVEEGQK-- 236

Query: 1189 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1248
                     V  KVL + R       + LS++ +L G   TN S                
Sbjct: 237  ---------VNVKVLSVDRD---NNRISLSIKETLPG-PWTNIS---------------- 267

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            E      +++G VK + S G F+ +   ++  V +S +S  ++ +P +    G+ V  +V
Sbjct: 268  EKAPKGSVLEGTVKRIVSYGAFVEVFSGVEGLVHISQISHKHIGTPHEVLKEGQKVQVKV 327

Query: 1309 LSVEPLSKRVEVTLKTSDSRTAS 1331
            L V    +R+ +++K    R  +
Sbjct: 328  LDVNEEQQRLSLSIKELQEREQA 350



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 144/367 (39%), Gaps = 63/367 (17%)

Query: 466 GWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVG-----QVVKCRIMSSI 519
           G + K+E+        N  + G  P SEL      +   +  VG     +V+K    + I
Sbjct: 21  GKVIKVEEKHVLASVENSKLDGIIPISELSSLHVEKAEDVVTVGDELELEVIKVEEEALI 80

Query: 520 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
            + R+I+          + DDL K    G +    V  V    +VV +  +G+    +P 
Sbjct: 81  LSKRKID-------AEKAWDDLEKKFESGEIFEAEVKDVVKGGLVVDLGVRGF----VPA 129

Query: 577 EHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSA-QQLPSDASHI 634
             + DH +E  +  K   KP   F +++ LD E + L+LS +  +     +Q  S    +
Sbjct: 130 SLVEDHFVEDFSDYKG--KP-LTF-KIVELDKEKNRLILSHRAVVEEEKIRQKQSLLESL 185

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
            P  V+ G +  I + G FV  +G + G    S+         S     GQ V   +L V
Sbjct: 186 QPGQVLEGTIQRITDFGAFVD-IGGVDGLVHISQLSHQHVEKPSDVVEEGQKVNVKVLSV 244

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 754
           + +  RI+LS+K++                             G      E    GSV+E
Sbjct: 245 DRDNNRISLSIKETLP---------------------------GPWTNISEKAPKGSVLE 277

Query: 755 GKVHESNDFGVVVSFEEHSDVYGF-----ITHHQLAGA--TVESGSVIQAAILDVAKAER 807
           G V     +G  V  E  S V G      I+H  +      ++ G  +Q  +LDV + ++
Sbjct: 278 GTVKRIVSYGAFV--EVFSGVEGLVHISQISHKHIGTPHEVLKEGQKVQVKVLDVNEEQQ 335

Query: 808 LVDLSLK 814
            + LS+K
Sbjct: 336 RLSLSIK 342


>gi|184200835|ref|YP_001855042.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201]
 gi|183581065|dbj|BAG29536.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201]
          Length = 493

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 188/417 (45%), Gaps = 68/417 (16%)

Query: 1013 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1062
            ++     + V++IG++  F    D +I     G  V G V KVD +  LL I       +
Sbjct: 1    MTTTTQQVAVNDIGTEEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVI 60

Query: 1063 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1122
             ++   +     P ++        +G  V   VL   KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDINPDDV------VAVGDEVEALVLP--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1123 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            I        I E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------IKEDDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
                          Q ++ K++E+ +      +V LS R+ L+   S   ++        
Sbjct: 164  --------------QQLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRANF------- 199

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
                  ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 200  ------LQQLQKGQVRTGTVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGL 1359
            + V   VL V+   +RV ++LK      A+Q +   L +  H +G +V G++ ++  +G 
Sbjct: 253  QEVTVEVLDVDMDRERVSLSLK------ATQEDPWQLFARTHALGQVVPGKVTKLVPFGA 306

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            F+ +E+  + GL H+SEL++ HVD  E +    E++ VK++ +D ++RRISL +K +
Sbjct: 307  FVRVED-GIEGLVHISELAQRHVDMAEQVVSVNEELFVKVIDIDLDRRRISLSLKQA 362



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 145/348 (41%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    + P     VG E+   VL  + 
Sbjct: 33  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDINPDDVVAVGDEVEALVLPKED 92

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKIKE--DDGVVTGTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRANFLQQLQ 204

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + +G V  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRTGTVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 259 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 314

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   V + +   ++D++ +  RI+LSLKQ+
Sbjct: 315 EGLVHISELAQRHVDMAEQVVSVNEELFVKVIDIDLDRRRISLSLKQA 362



 Score = 41.2 bits (95), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 40/284 (14%)

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL- 602
           G LV G V  V  + V++ +   GY ++G IP+  L+  ++H      V+  G E + L 
Sbjct: 33  GDLVEGTVVKVDRDEVLLDI---GYKTEGVIPSRELS--IKHDINPDDVVAVGDEVEALV 87

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLT 661
           L  +++   L+LS K +    A     D   I   + VV G V  +++ G  +     L 
Sbjct: 88  LPKEDKEGRLILSKKRAQYERAW---GDIEKIKEDDGVVTGTVIEVVKGGLILDI--GLR 142

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDASFM 718
           GF P S     +  DL+   Y+GQ + + I++++     + LS +   +   S   A+F+
Sbjct: 143 GFLPASLVEMRRVRDLAP--YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRANFL 200

Query: 719 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 778
           Q+    + +   + S  + G+       F+    ++G VH S      +S++        
Sbjct: 201 QQLQKGQVRTGTVSSIVNFGA-------FVDLGGVDGLVHVSE-----LSWK-------- 240

Query: 779 ITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
             H       VE G  +   +LDV      V LSLK    D ++
Sbjct: 241 --HIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 282


>gi|384450566|ref|YP_005663166.1| 30S ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|392376648|ref|YP_004064426.1| 30s ribosomal protein S1 [Chlamydophila psittaci RD1]
 gi|410858433|ref|YP_006974373.1| 30s ribosomal protein S1 [Chlamydia psittaci 01DC12]
 gi|313847991|emb|CBY16988.1| 30s ribosomal protein S1 [Chlamydophila psittaci RD1]
 gi|328914660|gb|AEB55493.1| ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|410811328|emb|CCO01974.1| 30s ribosomal protein S1 [Chlamydia psittaci 01DC12]
          Length = 581

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 73/392 (18%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 272  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KN+              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNVV-------------DPSEVVNKGDEVEAIVL 361

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V+  +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKN 401

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGV 461

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K   S   ++ E         G ++ G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLSSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              IE I   G+ V  K++K+D + +++SL +K
Sbjct: 517  SKIEDIISIGDSVSAKVIKLDPDHKKVSLSVK 548



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDK 278

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  + G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGA--ELVFRVLG 430
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+  E V   + 
Sbjct: 392 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 451

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 191/477 (40%), Gaps = 74/477 (15%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 425
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 539
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INIDRRNVVVSRRELLEAERISKKAEL 213

Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            +Q     +L +D E   + L  K    N  + +        P   + G +  ++  G F
Sbjct: 265 LNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRITGKIVKLLPYGAF 321

Query: 654 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                H     +I          + GS+++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNE 471



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 642  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 701
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 283

Query: 702  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 761
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 316

Query: 762  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 815
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 376

Query: 816  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 875
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 377  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 876  SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 935
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 423  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 475

Query: 936  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 995
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 476  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 532

Query: 996  IIAKSNKPDMKKSFL 1010
            +I     PD KK  L
Sbjct: 533  VIKLD--PDHKKVSL 545



 Score = 41.2 bits (95), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 378 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 435
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 282

Query: 436 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 494
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 495 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 550
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 340 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 397

Query: 551 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 603
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 448

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 662
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 504

Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 505 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 549


>gi|300361576|ref|ZP_07057753.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03]
 gi|300354195|gb|EFJ70066.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03]
          Length = 398

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 10/175 (5%)

Query: 1246 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +V+ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHVDKPSDVLKAG 244

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G FI
Sbjct: 245  QDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFI 300

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             + +  + GL HVSE++  HVD    + + G+ VKVK+L VD   RRISL +K +
Sbjct: 301  EVAD-GIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 416
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   + KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHVDKPSD 239

Query: 417 KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 470
             K G ++  +V+G+   R  I+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDRHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 471 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           +   G F+   +G+QG    SE+      +PS +  VGQ VK +++S  P+ RRI+LS 
Sbjct: 293 LTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSI 351



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 10/175 (5%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            K LEK+        V+G V      G  + + +R      L+SN    YV S  K + IG
Sbjct: 103  KELEKV--FEEGKTVEGTVTGAVRGGLLVDVGTRGFLPASLISNR---YV-SDLKPY-IG 155

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            K +  ++  ++P   R+ ++ K    +   ++  N  S L VGD V G++ R+  +G F+
Sbjct: 156  KKMNLKITEIDPNKNRLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFGAFV 215

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             +   +  GL H+SE+S  HVD    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 216  DVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQT 268



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 52/281 (18%)

Query: 1086 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1145
            +IGK +   +  I+  K   RL+L   +  + +K  + + +N+ + +  GD V G++S+ 
Sbjct: 153  YIGKKMNLKITEIDPNKN--RLILS--RKDLIEKEREEAFENVASQLVVGDTVEGKVSR- 207

Query: 1146 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
            L+G G  V   G  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  LTGFGAFVDVGG--VDGLVHISEISYKHVDKP--------SDVLKA---GQDVKVKVIGI 254

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
                     + LS++ +L                 P    E  E L    I++G VK +T
Sbjct: 255  DDD---RHRISLSIKQTL-----------------PSPFEEATEGLHEGDIIEGEVKTLT 294

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
            S G FI ++  +   V +S +++ +V+ P     +G+ V  +VLSV+P  +R+ +++K +
Sbjct: 295  SFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354

Query: 1326 D--------SRTASQSEI------NNLSNLHVGDIVIGQIK 1352
            D        SR   Q  +      +N +   +GDI+  Q+K
Sbjct: 355  DPNAAKSENSRPRRQDSVADKYMNDNDNGFALGDIIGDQLK 395



 Score = 45.1 bits (105), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGDKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 523
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 524 RINLS---FMMKPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R+ LS    + K    + +++     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             ++ G V  +   G F+     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDP 342

Query: 697 ETGRITLSLKQS 708
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354


>gi|379735729|ref|YP_005329235.1| 30S ribosomal protein S1 [Blastococcus saxobsidens DD2]
 gi|378783536|emb|CCG03204.1| 30S ribosomal protein S1 [Blastococcus saxobsidens DD2]
          Length = 495

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 189/416 (45%), Gaps = 67/416 (16%)

Query: 1015 IKPS---MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH---- 1061
            ++PS    + +++IGS   F    D++I     G  V G + KVD +  LL I       
Sbjct: 6    VRPSSTPQVAINDIGSAEDFLAAIDLTIKYFNDGDIVEGVIVKVDRDEVLLDIGYKTEGV 65

Query: 1062 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1121
            + ++   +    +P+E+        +G  V   VL   KE K  RL+L   +        
Sbjct: 66   IPSRELSIKHDVDPNEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQY 112

Query: 1122 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            + +   ++      ++V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  ERAWGTIEAKKEADEVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGR 170

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
            +               ++ K++E+ +      +V LS R  L+   S   S+        
Sbjct: 171  E---------------LEAKIIELDKNRN---NVVLSRRQWLEQTQSEVRSEF------- 205

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
                  +  L+   +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 206  ------LNKLAKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 258

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLF 1360
            + V   VL V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F
Sbjct: 259  QEVTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHQIGQVVPGKVTKLVPFGAF 313

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + + +  + GL H+SEL+E HV+  E + + G+++ VK++ +D ++RRISL +K +
Sbjct: 314  VRV-DEGIEGLVHISELAERHVEIPEQVVQVGDEILVKVIDIDLDRRRISLSLKQA 368



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 153/347 (44%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  EA D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEAKKEA-DEVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRQWLEQTQSEVRSEFLNKLA 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  +Q    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDLDRERVSLSLKATQEDPWRQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEILVKVIDIDLDRRRISLSLKQA 368



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 123/287 (42%), Gaps = 32/287 (11%)

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 603
           G +V GV+  V  + V++ +   GY ++G IP+  L+  ++H      V+K G E + L+
Sbjct: 39  GDIVEGVIVKVDRDEVLLDI---GYKTEGVIPSRELS--IKHDVDPNEVVKVGDEVEALV 93

Query: 604 VL-DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
           +  +++   L+LS K +    A    +  +    + VV G V  +++ G  +     L G
Sbjct: 94  LQKEDKEGRLILSKKRAQYERA--WGTIEAKKEADEVVTGTVIEVVKGGLILDI--GLRG 149

Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 722
           F P S     +  DL    YVG+ + + I++++     + LS +Q    +   S ++  F
Sbjct: 150 FLPASLVEMRRVRDLQP--YVGRELEAKIIELDKNRNNVVLSRRQWLEQTQ--SEVRSEF 205

Query: 723 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 782
           L   K+A  Q      S +     F+    ++G VH S      +S++          H 
Sbjct: 206 L--NKLAKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSE-----LSWK----------HI 248

Query: 783 QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 829
                 VE G  +   +LDV      V LSLK    D +R+     Q
Sbjct: 249 DHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHQ 295


>gi|7579906|gb|AAF64246.1| 30S ribosomal protein S1 [Corynebacterium stationis]
          Length = 489

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELQAKEEPVTGTVIEVVKG--GLII 138

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +   +P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG---------------QELEAKIIELDKQRN---N 180

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAFLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   GE
Sbjct: 282  WRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGE 340

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
             V VK++ +D E+RRISL +K +
Sbjct: 341  DVMVKVIDIDLERRRISLSVKQA 363



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           ++G    SEL       P  + +VG+ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGEDVMVKVIDIDLERRRISLS 359



 Score = 47.4 bits (111), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEEL-QAKEEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+          +   VG+ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGEDVMVKVIDIDLERRRISLSVKQA-----DEDYTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDSETNEWKEGF 405


>gi|420190098|ref|ZP_14696042.1| putative ribosomal protein S1 [Staphylococcus epidermidis NIHLM037]
 gi|394258989|gb|EJE03859.1| putative ribosomal protein S1 [Staphylococcus epidermidis NIHLM037]
          Length = 392

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 106/193 (54%), Gaps = 11/193 (5%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            ++ L+   ++ G V  +T+ G FI +   +D  V +S LS  +V++PE+   +G+ V  +
Sbjct: 188  LDSLNEGDVIDGKVARLTNFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSVGEAVKIK 246

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            V SVE  S+R+ +++K     T      N     H  D++ G + R+ ++G F+ I   +
Sbjct: 247  VKSVEKDSERISLSIKD----TLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEIA-PS 301

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK-----NDA 1422
            + GL H+SE+   H+ +   +   G++V VKIL +D++  RISL +K++  K     +DA
Sbjct: 302  VQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENVIESDA 361

Query: 1423 DNLQMSSEEESDE 1435
               Q   E+++DE
Sbjct: 362  STTQSYLEDDNDE 374



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 92/170 (54%), Gaps = 10/170 (5%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
            E L+ + +++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLNNDEVIEAEVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +V  ++P + RV ++ K  +       + + L +L+ GD++ G++ R+ ++G FI I   
Sbjct: 157  KVEELDPENNRVILSRKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGV 216

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  GL HVSELS +HV   E +   GE VK+K+  V+K+  RISL +K +
Sbjct: 217  D--GLVHVSELSHEHVQTPEEVVSVGEAVKIKVKSVEKDSERISLSIKDT 264



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 32/372 (8%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPNEVVKVGDEVEAY 70

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 544 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
           G     ++  ++ +S  + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 240 GEAVKIKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 296

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 711
                + G    S+         ++    GQ V   IL ++ +  RI+LS+K +      
Sbjct: 297 EIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENV 356

Query: 712 -STDASFMQEHF 722
             +DAS  Q + 
Sbjct: 357 IESDASTTQSYL 368



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 24/251 (9%)

Query: 288 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 340
           +++V  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 341 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
            IL  + +E L     KAS  + L         G V+ GKV  + +FGA +   GGV  L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219

Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 458
             +  +S   +  P +   VG  +  +V  V+  S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVKIKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
               +  G + ++   G FV     VQG    SE+       P+ +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336

Query: 519 IPASRRINLSF 529
              + RI+LS 
Sbjct: 337 DEDNERISLSI 347



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 112/289 (38%), Gaps = 55/289 (19%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPNEVVKVGDEVEA 69

Query: 602 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 652
            +     D E+     +  Y L  S +QL ++ S+      ++ + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGL 123

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K      
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 772
            DA          +K ++L S                G VI+GKV    +FG  +     
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFGAFIDI--- 213

Query: 773 SDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
             V G +        H Q     V  G  ++  +  V K    + LS+K
Sbjct: 214 GGVDGLVHVSELSHEHVQTPEEVVSVGEAVKIKVKSVEKDSERISLSIK 262


>gi|359769917|ref|ZP_09273663.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans NBRC 16320]
 gi|359312720|dbj|GAB26496.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans NBRC 16320]
          Length = 527

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 41   TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 100

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 101  SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 147

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 148  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 204

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 205  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 238

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 239  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 293

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 294  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 348

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            ++   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 349  VDE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 401



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 61  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 120

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 121 EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 180

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 181 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 232

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 233 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 291

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 292 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 327

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  +E   + G +   +LA   VE        G     
Sbjct: 328 ---AIGQIVPGKVTKLVPFGAFVRVDE--GIEGLVHISELAERHVEVPDQVVAVGDDAMV 382

Query: 798 AILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            ++D+    R + LSLK    D   E + ++
Sbjct: 383 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 413



 Score = 47.4 bits (111), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 72  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 131

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 132 KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 187

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 188 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 243

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 244 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 297

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 298 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 353

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 354 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 408

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 409 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 443


>gi|334336975|ref|YP_004542127.1| RNA binding S1 domain-containing protein [Isoptericola variabilis
            225]
 gi|334107343|gb|AEG44233.1| RNA binding S1 domain protein [Isoptericola variabilis 225]
          Length = 491

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 12   VAVNDIGTEDDFLAAVDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 71

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 72   KHDVDPGEV------VAVGDVVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 118

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 119  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYVGKE------- 169

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+    T S   ST + T         
Sbjct: 170  --------IEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT--------- 206

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 207  -LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 264

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  +
Sbjct: 265  DVDFDRERVSLSLKAT-----QEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVED-GI 318

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+  HV+  E +   G++V VK++ +D E+RRISL +K +
Sbjct: 319  EGLVHISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQA 366



 Score = 57.4 bits (137), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 207 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 265

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 266 VDFDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 322

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +     P  +  VGQ V  +++      RRI+LS 
Sbjct: 323 HISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSL 363



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG  +   VL  + 
Sbjct: 37  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDVVEALVLQKED 96

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 153 LVEMRRVRDLAP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 208

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 209 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 262

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 263 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 318

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VGQ V   ++D++ E  RI+LSLKQ+
Sbjct: 319 EGLVHISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQA 366


>gi|89069005|ref|ZP_01156386.1| 30S ribosomal protein S1 [Oceanicola granulosus HTCC2516]
 gi|89045374|gb|EAR51439.1| 30S ribosomal protein S1 [Oceanicola granulosus HTCC2516]
          Length = 561

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 175/408 (42%), Gaps = 60/408 (14%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1094
            GQ V G V  +    A + +   +   L + D A+     PSE+        IG+ V   
Sbjct: 197  GQAVDGVVKNITEYGAFVDLG-GVDGLLHVTDMAWRRVNHPSEI------LSIGETVKVQ 249

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDK-TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1153
            V+ INKE   + L ++  QD   D  TV    D++ T         GR++ I     G  
Sbjct: 250  VIKINKETHRISLGMKQLQDDPWDTVTVKYPLDSVHT---------GRVTNITDY--GAF 298

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V++ P + G VH +E+           + +    P       Q V+  VLEI    R   
Sbjct: 299  VELEPGVEGLVHVSEMS----------WTKKNVHPGKIVSTSQEVEVMVLEIDEAKR--- 345

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
                  R SL G+  T  +      +T   H E  E       V+G VKN+T  G F+ L
Sbjct: 346  ------RVSL-GLKQTMRNPWEVFAET---HPEGTE-------VEGEVKNITEFGLFVGL 388

Query: 1274 SRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1332
               +D  V LS+L+ +G  E    ++  G +V  +VL V+   +R+ +++K  D    ++
Sbjct: 389  EGDIDGMVHLSDLTWEGRGEDVIGDYRKGDVVKAKVLEVDTDKERISLSIKALDGDPFAE 448

Query: 1333 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
            +    +  +  G ++   + ++E  G  I +E   +      S+LS D  +     ++ G
Sbjct: 449  A----VGGVKRGSVITVNVTKIEDGG--IEVEYEGMKSFIRRSDLSRDRSEQRPERFQPG 502

Query: 1393 EKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEV 1440
            +KV V++  +D + RR+ L +K+     + + +Q     +S  ++ ++
Sbjct: 503  DKVDVRVTNIDPKTRRLGLSIKAREIAEEKEAVQQYGSSDSGASLGDI 550



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 4/89 (4%)

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
            +SR   ++E+  + NLH G  V G +K +  YG F+ +   +  GL HV++++   V++ 
Sbjct: 181  ESRAEQRAEV--IGNLHEGQAVDGVVKNITEYGAFVDLGGVD--GLLHVTDMAWRRVNHP 236

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              I   GE VKV+++K++KE  RISLGMK
Sbjct: 237  SEILSIGETVKVQVIKINKETHRISLGMK 265



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 11/177 (6%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            +  E I +L     V G VKN+T  G F+ L   +D  + +++++   V  P +   IG+
Sbjct: 186  QRAEVIGNLHEGQAVDGVVKNITEYGAFVDLG-GVDGLLHVTDMAWRRVNHPSEILSIGE 244

Query: 1303 LVAGRVLSVEPLSKRVEVTLKT-SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
             V  +V+ +   + R+ + +K   D    + +    L ++H      G++  +  YG F+
Sbjct: 245  TVKVQVIKINKETHRISLGMKQLQDDPWDTVTVKYPLDSVHT-----GRVTNITDYGAFV 299

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             +E   + GL HVSE+S     N+    I    ++V+V +L++D+ KRR+SLG+K +
Sbjct: 300  ELE-PGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVEVMVLEIDEAKRRVSLGLKQT 354



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 35/221 (15%)

Query: 601 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           Q+L +D    N+++S +  L  S A+Q      ++H    V G V NI E G FV  LG 
Sbjct: 160 QILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLHEGQAVDGVVKNITEYGAFVD-LGG 218

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    +     +    S+   +G++V+  ++ +N ET RI+L +KQ            
Sbjct: 219 VDGLLHVTDMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQ------------ 266

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 773
                      LQ    +   +K    + + SV  G+V    D+G  V  E       H 
Sbjct: 267 -----------LQDDPWDTVTVK----YPLDSVHTGRVTNITDYGAFVELEPGVEGLVHV 311

Query: 774 DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
               +   +   G  V +   ++  +L++ +A+R V L LK
Sbjct: 312 SEMSWTKKNVHPGKIVSTSQEVEVMVLEIDEAKRRVSLGLK 352



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 107/472 (22%), Positives = 177/472 (37%), Gaps = 69/472 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK--KFKVGAELVFRVLGV 431
           G VVKG+VIAV++  AI+     ++    L      E   PG+  +  VG E+   +  V
Sbjct: 26  GSVVKGRVIAVEAGQAIIDVGYKMEGRVDLK-----EFANPGEAPEIGVGDEVEVYLRNV 80

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           ++ R      + + + + A         D     G I    K G F     G   F P S
Sbjct: 81  ENARGEAVISREMARREEAWDRLEKAYADEERVEGAIFGRVK-GGFTVDLGGAVAFLPGS 139

Query: 492 ELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 547
           ++ + P  +   +  + Q  +     R   +I  SRR  L       R      +  G  
Sbjct: 140 QVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLHEGQA 199

Query: 548 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHATVMKSVIKPGYEFDQLL 603
           V GVV  +T     V +   G   G +    +A    +H      +   +K      Q++
Sbjct: 200 VDGVVKNITEYGAFVDL---GGVDGLLHVTDMAWRRVNHPSEILSIGETVKV-----QVI 251

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHI-HPNSVVH-GYVCNIIETGCFVRFLGRLT 661
            ++ E+  + L  K       Q  P D   + +P   VH G V NI + G FV     + 
Sbjct: 252 KINKETHRISLGMK-----QLQDDPWDTVTVKYPLDSVHTGRVTNITDYGAFVELEPGVE 306

Query: 662 GFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
           G    S+ +   +     K     Q V   +L+++    R++L LKQ+  +  +  F + 
Sbjct: 307 GLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDEAKRRVSLGLKQTMRNPWEV-FAET 365

Query: 721 HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 780
           H                            G+ +EG+V    +FG+ V  E   D+ G + 
Sbjct: 366 HPE--------------------------GTEVEGEVKNITEFGLFVGLE--GDIDGMVH 397

Query: 781 HHQLA----GATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 824
              L     G  V      G V++A +L+V   +  + LS+K +  D F EA
Sbjct: 398 LSDLTWEGRGEDVIGDYRKGDVVKAKVLEVDTDKERISLSIKALDGDPFAEA 449



 Score = 40.4 bits (93), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 18/197 (9%)

Query: 361 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKV 420
           +E    TH +   G  V+G+V  +  FG  V   G +  +    H+S+      G+   +
Sbjct: 359 WEVFAETHPE---GTEVEGEVKNITEFGLFVGLEGDIDGMV---HLSDLTWEGRGEDV-I 411

Query: 421 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSS--YAEATD-----RLITHGWITKIEK 473
           G      V  VK+K + V   K  +   +  L    +AEA        +IT   +TKIE 
Sbjct: 412 GDYRKGDV--VKAKVLEVDTDKERISLSIKALDGDPFAEAVGGVKRGSVITVN-VTKIED 468

Query: 474 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 533
            G  V  Y G++ F  RS+L  D   +    +  G  V  R+ +  P +RR+ LS   + 
Sbjct: 469 GGIEVE-YEGMKSFIRRSDLSRDRSEQRPERFQPGDKVDVRVTNIDPKTRRLGLSIKARE 527

Query: 534 TRVSEDDLVKLGSLVSG 550
               ++ + + GS  SG
Sbjct: 528 IAEEKEAVQQYGSSDSG 544


>gi|403713637|ref|ZP_10939721.1| 30S ribosomal protein S1 [Kineosphaera limosa NBRC 100340]
 gi|403212049|dbj|GAB94404.1| 30S ribosomal protein S1 [Kineosphaera limosa NBRC 100340]
          Length = 489

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 173/389 (44%), Gaps = 61/389 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG----H 1094
            G  V G + KVD +  LL I    +  +        PS     +     G+ VT      
Sbjct: 35   GDIVEGVIVKVDRDEVLLDIGYKTEGVI--------PSRELSIKHDVDPGEVVTVGDEVE 86

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
             L + KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 87   ALVLQKEDKEGRLILSKKR-----AQYERAWGTIEKVKEEDGVVTGTVIEVVKG--GLIL 139

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 140  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------IEAKIIELDKNRN---N 181

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   +               + +L    +  G V ++ + G F+ L 
Sbjct: 182  VVLSRRAWLEQTQSEVRTTF-------------LRELQKGQVRSGVVSSIVNFGAFVDLG 228

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      +  
Sbjct: 229  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKAT-----QEDP 282

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
              + +  H +G +V G++ ++  +G F+ +++  + GL H+SEL+E HV+  E +   G 
Sbjct: 283  WQHFARTHAIGQVVPGKVTKLVPFGAFVRVDD-GIEGLVHISELAERHVELPEQVVTVGG 341

Query: 1394 KVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
            ++ VK++ +D E+RRISL +K +   NDA
Sbjct: 342  EIFVKVIDIDLERRRISLSLKQA---NDA 367



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 156/362 (43%), Gaps = 35/362 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 35  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDEVEALVLQKED 94

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGTIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 150

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 151 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLRELQ 206

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 260

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 261 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAFVRVDDGI 316

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG  +   ++D++ E  RI+LSLKQ    + DA+    
Sbjct: 317 EGLVHISELAERHVELPEQVVTVGGEIFVKVIDIDLERRRISLSLKQ----ANDAALGNA 372

Query: 721 HF 722
            F
Sbjct: 373 EF 374



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 133/309 (43%), Gaps = 54/309 (17%)

Query: 1040 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1090
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 109  ERAWGTIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 167

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1147
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G +S I++
Sbjct: 168  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLRELQKGQVRSGVVSSIVN 220

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
               G  V +G  + G VH +EL    +  P    + GQ            V  +VL++  
Sbjct: 221  F--GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVEVGQE-----------VTVEVLDVDM 266

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LSL+++ +                P +H  +   +    +V G V  +   
Sbjct: 267  DRE---RVSLSLKATQE---------------DPWQHFARTHAI--GQVVPGKVTKLVPF 306

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   ++  V +S L++ +VE PE+   +G  +  +V+ ++   +R+ ++LK ++ 
Sbjct: 307  GAFVRVDDGIEGLVHISELAERHVELPEQVVTVGGEIFVKVIDIDLERRRISLSLKQAND 366

Query: 1328 RTASQSEIN 1336
                 +E +
Sbjct: 367  AALGNAEFD 375


>gi|317470286|ref|ZP_07929680.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes sp.
            3_2_56FAA]
 gi|316902259|gb|EFV24179.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes sp.
            3_2_56FAA]
          Length = 633

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 8/181 (4%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  E    + P M + G VKNVT  G FI L    D  + +S +S G VE+P+K F IG 
Sbjct: 459  KQKELFAKIEPGMKIDGVVKNVTDFGAFIDLG-GADGLLHISEMSWGRVENPKKVFSIGD 517

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             V   VL  +   +++ ++LK  +     ++E        VG++V G++ R+  +G F+ 
Sbjct: 518  KVT--VLIKDIQGEKIALSLKFPEENPWLKAE----EKYKVGNVVDGKVARMTDFGAFVE 571

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
            +E + +  L HVS+++++H+D    +   G+++  K++   K++++ISL MK+    N  
Sbjct: 572  LE-SGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDFKKDEKKISLSMKALLNDNAE 630

Query: 1423 D 1423
            D
Sbjct: 631  D 631



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 16/240 (6%)

Query: 294 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE 349
           +D GL +++D     V  PA + +SD  E +++K +     G  +   I  F    R + 
Sbjct: 394 LDGGLSVIID--EARVFIPASL-VSDSYERDLKKYD-----GQEIEFVISEFNPRKRRVI 445

Query: 350 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
           G    +L A+  E      + ++PGM + G V  V  FGA +   GG   L  +  MS  
Sbjct: 446 GDRKQLLVAAKKEKQKELFAKIEPGMKIDGVVKNVTDFGAFIDL-GGADGLLHISEMSWG 504

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
            +  P K F +G ++   +  ++ ++I ++ K       L     Y       +  G + 
Sbjct: 505 RVENPKKVFSIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAEEKYKVGN---VVDGKVA 561

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++   G FV   +G+      S++  +   +PS +  VGQ +  +++      ++I+LS 
Sbjct: 562 RMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDFKKDEKKISLSM 621



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 35/198 (17%)

Query: 632 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
           + I P   + G V N+ + G F+  LG   G    S+   G+  +  K + +G  V   I
Sbjct: 465 AKIEPGMKIDGVVKNVTDFGAFID-LGGADGLLHISEMSWGRVENPKKVFSIGDKVTVLI 523

Query: 692 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 751
            D+  E  +I LSLK          F +E+                   LK  E + +G+
Sbjct: 524 KDIQGE--KIALSLK----------FPEEN-----------------PWLKAEEKYKVGN 554

Query: 752 VIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAE 806
           V++GKV    DFG  V  E   D    ++     H       +  G  I A ++D  K E
Sbjct: 555 VVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDFKKDE 614

Query: 807 RLVDLSLKTVFIDRFREA 824
           + + LS+K +  D   +A
Sbjct: 615 KKISLSMKALLNDNAEDA 632



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 372 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
           K G VV GKV  +  FGA V+   G+ AL  +  +++  I KP     VG E+  +V+  
Sbjct: 551 KVGNVVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDF 610

Query: 432 K--SKRITVTHKKTL 444
           K   K+I+++ K  L
Sbjct: 611 KKDEKKISLSMKALL 625


>gi|406886795|gb|EKD33753.1| hypothetical protein ACD_75C02606G0004 [uncultured bacterium]
          Length = 576

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 169/392 (43%), Gaps = 40/392 (10%)

Query: 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
            S ++ G ++KG +  +  +G  +   GG+  LC +  +S   +  P K +KVG EL  +
Sbjct: 196 RSKLEEGQIIKGAITNITDYGLFIDM-GGMDGLCHITDLSWGRVSHPAKLYKVGEELEVK 254

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
           VL     +    H +  +  K      +A   +R      T G +  I  +G FV    G
Sbjct: 255 VL-----KYDREHDRVSLGVKQLRDDPWATVVNRYPVGQTTKGKVVSITDYGVFVELEEG 309

Query: 484 VQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 542
           V+G    SE+        PS M  VG  V+  +++    ++RI+L   MK  + +  DLV
Sbjct: 310 VEGLIHVSEMTWSKKPRHPSKMVSVGDEVEVMVLNIETETKRISLG--MKQLQPNPWDLV 367

Query: 543 K----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
                +GS++ G +  +T   V +     G  +G     H++D     +  + +  P  +
Sbjct: 368 TENYPVGSVIEGKIKNITDFGVFI-----GIEEGIDGLIHVSD----LSWTERIKHPSEK 418

Query: 599 FDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIET 650
           + +       +L +D E+    L  K  + +  Q     A + +P+ +VV G + N+ + 
Sbjct: 419 YTKGETIQAVVLKIDKENERFSLGIKQLVPDPWQA----AYNNYPSGTVVEGEITNVTDF 474

Query: 651 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710
           G FV+    + G    S+    +       Y VG ++++ +++V+++  +I LS+K    
Sbjct: 475 GVFVKLEEGIEGLVHVSELSKDKVKTPVGMYQVGDTLKAIVINVSAKDRKIGLSVK--TL 532

Query: 711 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 742
              D     E F   EK+A   +    G  LK
Sbjct: 533 EGEDEGAAVEKFKKAEKLAAENAPSTFGDLLK 564



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 169/388 (43%), Gaps = 73/388 (18%)

Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
            IG+++   +L  NK++  + +  R   +   +K      + M++ + EG I+ G I+ I 
Sbjct: 158  IGESMDFKILKFNKKRNNVVISRRAILEEERNKL----REEMRSKLEEGQIIKGAITNIT 213

Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF-------------------- 1186
                GL + +G  + G  H T+L    VS P   Y  G+                     
Sbjct: 214  DY--GLFIDMG-GMDGLCHITDLSWGRVSHPAKLYKVGEELEVKVLKYDREHDRVSLGVK 270

Query: 1187 ----DPLSG----YDEGQFVKCKVL---------EISRTVRGTFHV-ELSLRSSLDGMSS 1228
                DP +     Y  GQ  K KV+         E+   V G  HV E++        S 
Sbjct: 271  QLRDDPWATVVNRYPVGQTTKGKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSK 330

Query: 1229 TNSSD-----LSTDVDTPGKHLE-KIEDLSPN------------MIVQGYVKNVTSKGCF 1270
              S       +  +++T  K +   ++ L PN             +++G +KN+T  G F
Sbjct: 331  MVSVGDEVEVMVLNIETETKRISLGMKQLQPNPWDLVTENYPVGSVIEGKIKNITDFGVF 390

Query: 1271 IMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDS 1327
            I +   +D  + +S+LS    ++ P +++  G+ +   VL ++  ++R  + +K    D 
Sbjct: 391  IGIEEGIDGLIHVSDLSWTERIKHPSEKYTKGETIQAVVLKIDKENERFSLGIKQLVPDP 450

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
              A+       +N   G +V G+I  V  +G+F+ +E   + GL HVSELS+D V     
Sbjct: 451  WQAA------YNNYPSGTVVEGEITNVTDFGVFVKLEE-GIEGLVHVSELSKDKVKTPVG 503

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            +Y+ G+ +K  ++ V  + R+I L +K+
Sbjct: 504  MYQVGDTLKAIVINVSAKDRKIGLSVKT 531



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/416 (18%), Positives = 172/416 (41%), Gaps = 73/416 (17%)

Query: 601  QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGR 659
            ++L  + + +N+++S +  L     +L  +  S +    ++ G + NI + G F+  +G 
Sbjct: 165  KILKFNKKRNNVVISRRAILEEERNKLREEMRSKLEEGQIIKGAITNITDYGLFID-MGG 223

Query: 660  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
            + G    +    G+ +  +K Y VG+ +   +L  + E  R++L +KQ            
Sbjct: 224  MDGLCHITDLSWGRVSHPAKLYKVGEELEVKVLKYDREHDRVSLGVKQ------------ 271

Query: 720  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
               L ++  A +            V  + +G   +GKV    D+GV V  EE   V G I
Sbjct: 272  ---LRDDPWATV------------VNRYPVGQTTKGKVVSITDYGVFVELEEG--VEGLI 314

Query: 780  THHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 831
               ++  +         V  G  ++  +L++    + + L +K +  + +     N    
Sbjct: 315  HVSEMTWSKKPRHPSKMVSVGDEVEVMVLNIETETKRISLGMKQLQPNPWDLVTENYPVG 374

Query: 832  -----KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 886
                 K K   +    +G+ + ++ ++ +                   + +S     K P
Sbjct: 375  SVIEGKIKNITDFGVFIGIEEGIDGLIHV-------------------SDLSWTERIKHP 415

Query: 887  QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 946
             +++  G+++ A V+ +   +   R  L +K +      ++      ++Y  G++V+ EI
Sbjct: 416  SEKYTKGETIQAVVLKIDKENE--RFSLGIKQLVPDPWQAAY-----NNYPSGTVVEGEI 468

Query: 947  TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 1002
            T +    + +K   G  G +H++E++ DK   V+     +++G T+ A +I  S K
Sbjct: 469  TNVTDFGVFVKLEEGIEGLVHVSELSKDK---VKTPVGMYQVGDTLKAIVINVSAK 521


>gi|381397179|ref|ZP_09922592.1| RNA binding S1 domain protein [Microbacterium laevaniformans OR221]
 gi|380775496|gb|EIC08787.1| RNA binding S1 domain protein [Microbacterium laevaniformans OR221]
          Length = 483

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 171/384 (44%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  + G V K+D +  LL +       + ++   +    +P+E+        +G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEVEAL 91

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1153
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVEK------IKENDGVVTGSVIEVVKG--GLI 141

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V IG   +      EL+ +    P  G               Q ++ K+LE+ +      
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG---------------QEIEAKILELDKNRN--- 183

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
            +V LS R+ L+   S + +               + +L    + +G V ++ + G F+ L
Sbjct: 184  NVVLSRRALLEQTQSESRTTF-------------LNNLHKGQVRKGVVSSIVNFGAFVDL 230

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  V +S LS  ++E   +   +G+ V   +L V+   +RV ++LK +      + 
Sbjct: 231  G-GVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKAT-----QED 284

Query: 1334 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
                 +  H +G +  G++ ++  +G F+ + +  + GL H+SELS  HV+  E +   G
Sbjct: 285  PWQVFARTHAIGQVAPGKVTKLVPFGAFVRVAD-GIEGLVHISELSGKHVELAEQVVSVG 343

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            E+V VKI+ +D E+RRISL +K +
Sbjct: 344  EEVFVKIIDIDLERRRISLSLKQA 367



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 170/388 (43%), Gaps = 38/388 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +++G V+ +D    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKED 97

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVEKIKE-NDGVVT-GSVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R +  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRTTFLNNLH 209

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    V  G V  ++  G FVR    +
Sbjct: 264 ILEVDLDRERVSLSLKATQEDPWQVF----ARTHAIGQVAPGKVTKLVPFGAFVRVADGI 319

Query: 661 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
            G    S+ + G+  +L+ +   VG+ V   I+D++ E  RI+LSLKQ    S D +  +
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGEEVFVKIIDIDLERRRISLSLKQ-ANESVDPNGTE 377

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGF 747
               L     M      NG E K+ EGF
Sbjct: 378 FDPAL---YGMATEYDENG-EYKYPEGF 401


>gi|385813938|ref|YP_005850331.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
 gi|323466657|gb|ADX70344.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
          Length = 403

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGGFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDR 258

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +++K ++     Q+     ++L+ GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 14/173 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G V++GKV  + +FG  +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGGFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDN 256

Query: 434 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 487
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S  D
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSSD 362



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 34/197 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD++ G++S+ L+  GG +   G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSR-LTNFGGFIDVGG--VDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++ +                  P    +   DL+  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATADLNEG 283

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1315 SKRVEVTLKTSDSRTAS 1331
             +R+ +++K +DS  +S
Sbjct: 344  DRRISLSIKAADSNASS 360



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 134/320 (41%), Gaps = 36/320 (11%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVT 120

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 523
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 524 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREKAFDKVASQLVVGDVIEGKVSRLTNFGGFIDV---GGVDGLVHIS 227

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 697 ETGRITLSLK--QSCCSSTD 714
              RI+LS+K   S  SS+D
Sbjct: 343 SDRRISLSIKAADSNASSSD 362


>gi|336320735|ref|YP_004600703.1| RNA binding S1 domain protein [[Cellvibrio] gilvus ATCC 13127]
 gi|336104316|gb|AEI12135.1| RNA binding S1 domain protein [[Cellvibrio] gilvus ATCC 13127]
          Length = 492

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 173/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD +  LL I       + ++   +    +P E+        +G  V   
Sbjct: 39   GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEV------VKVGDEVEAL 92

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGVVTGTVIEVVKG--GLIL 143

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLGPYVGKE---------------IEAKIIELDKNRN---N 185

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+    T S   ST + T          L    +  G V ++ + G F+ L 
Sbjct: 186  VVLSRRAWLE---QTQSEVRSTFLQT----------LQKGQVRPGVVSSIVNFGAFVDLG 232

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      +  
Sbjct: 233  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKAT-----QEDP 286

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+  HV+  E + + G+
Sbjct: 287  WQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAVRHVEIPEQVVQVGD 345

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
             V VK++ +D E+RRISL +K +
Sbjct: 346  DVFVKVIDIDLERRRISLSLKQA 368



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 267

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL +     P  +  VG  V  +++      RRI+LS 
Sbjct: 325 HISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSL 365



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 153/351 (43%), Gaps = 37/351 (10%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG+  KVG E+   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDEVEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 ELGL----DPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 541
            + +    D G       +VG+ ++ +I+      +++  SRR  L       R +    
Sbjct: 155 LVEMRRVRDLGP------YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQT 208

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD 600
           ++ G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E  
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVT 262

Query: 601 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFL 657
            ++L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR  
Sbjct: 263 VEVLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVE 317

Query: 658 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
             + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 318 DGIEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQA 368


>gi|433455415|ref|ZP_20413498.1| 30S ribosomal protein S1 [Arthrobacter crystallopoietes BAB-32]
 gi|432197620|gb|ELK53989.1| 30S ribosomal protein S1 [Arthrobacter crystallopoietes BAB-32]
          Length = 491

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG+   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGTPEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+        +G  V   VL+  KE K  RL+L   +        DI     +
Sbjct: 74   KHDVDPGEV------VAVGDEVEALVLT--KEDKEGRLILSKKRAQYERAWGDI-----E 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 121  KVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG--------- 169

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                  Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+E
Sbjct: 170  ------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKLE 210

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
                  +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 211  ---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 266

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  +
Sbjct: 267  EVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-GI 320

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +
Sbjct: 321  EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDEVEALVLTKE 97

Query: 520 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 634
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 754
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 755 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 809
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 810 DLSLK 814
            LSLK
Sbjct: 362 SLSLK 366



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           EL +        +  VG  +  +++      RRI+LS 
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSL 365



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDEVEALVLTKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|374612566|ref|ZP_09685343.1| RNA binding S1 domain protein [Mycobacterium tusciae JS617]
 gi|373547477|gb|EHP74202.1| RNA binding S1 domain protein [Mycobacterium tusciae JS617]
          Length = 515

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 38   SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 97

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 98   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 144

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 145  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 201

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 202  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 235

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 236  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 290

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 291  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 345

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SELSE HV+  + + +  +   VK++ +D E+RRISL +K +
Sbjct: 346  VEE-GIEGLVHISELSERHVEVPDQVVQVNDDAMVKVIDIDLERRRISLSLKQA 398



 Score = 48.1 bits (113), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 152/382 (39%), Gaps = 50/382 (13%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 67  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 126

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 127 EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 185

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 186 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 238

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 239 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 297

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 298 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 330

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-SGSVIQ------AAILDVAKAE 806
            GKV +   FG  V  EE   + G +   +L+   VE    V+Q        ++D+    
Sbjct: 331 PGKVTKLVPFGAFVRVEE--GIEGLVHISELSERHVEVPDQVVQVNDDAMVKVIDIDLER 388

Query: 807 RLVDLSLKTVFIDRFREANSNR 828
           R + LSLK    D   E + ++
Sbjct: 389 RRISLSLKQANEDYTEEFDPSK 410



 Score = 45.1 bits (105), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 69  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 128

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 129 KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 184

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 185 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 240

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 241 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 294

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 295 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 350

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   V       ++D++ E  RI+LSLKQ+    T+      
Sbjct: 351 EGLVHISELSERHVEVPDQVVQVNDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 405

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 406 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 440


>gi|167748874|ref|ZP_02421001.1| hypothetical protein ANACAC_03648 [Anaerostipes caccae DSM 14662]
 gi|167651844|gb|EDR95973.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes
            caccae DSM 14662]
          Length = 633

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 8/181 (4%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  E    + P M + G VKNVT  G FI L    D  + +S +S G VE+P+K F IG 
Sbjct: 459  KQKELFAKIEPGMKIDGVVKNVTDFGAFIDLG-GADGLLHISEMSWGRVENPKKVFSIGD 517

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             V   VL  +   +++ ++LK  +     ++E        VG++V G++ R+  +G F+ 
Sbjct: 518  KVT--VLIKDIQGEKIALSLKFPEENPWLKAE----EKYKVGNVVDGKVARMTDFGAFVE 571

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
            +E + +  L HVS+++++H+D    +   G+++  K++   K++++ISL MK+    N  
Sbjct: 572  LE-SGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDFKKDEKKISLSMKALLNDNAE 630

Query: 1423 D 1423
            D
Sbjct: 631  D 631



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 16/240 (6%)

Query: 294 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE 349
           +D GL +++D     V  PA + +SD  E +++K +     G  +   I  F    R + 
Sbjct: 394 LDGGLSVIID--EARVFIPASL-VSDSYERDLKKYD-----GQEIEFVISEFNPRKRRVI 445

Query: 350 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
           G    +L A+  E      + ++PGM + G V  V  FGA +   GG   L  +  MS  
Sbjct: 446 GDRKQLLVAAKKEKQKELFAKIEPGMKIDGVVKNVTDFGAFIDL-GGADGLLHISEMSWG 504

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
            +  P K F +G ++   +  ++ ++I ++ K       L     Y       +  G + 
Sbjct: 505 RVENPKKVFSIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAEEKYKVGN---VVDGKVA 561

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++   G FV   +G+      S++  +   +PS +  VGQ +  +++      ++I+LS 
Sbjct: 562 RMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDFKKDEKKISLSM 621



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 35/198 (17%)

Query: 632 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
           + I P   + G V N+ + G F+  LG   G    S+   G+  +  K + +G  V   I
Sbjct: 465 AKIEPGMKIDGVVKNVTDFGAFID-LGGADGLLHISEMSWGRVENPKKVFSIGDKVTVLI 523

Query: 692 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 751
            D+  E  +I LSLK          F +E+                   LK  E + +G+
Sbjct: 524 KDIQGE--KIALSLK----------FPEEN-----------------PWLKAEEKYKVGN 554

Query: 752 VIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAE 806
           V++GKV    DFG  V  E   D    ++     H       +  G  I A ++D  K E
Sbjct: 555 VVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDFKKDE 614

Query: 807 RLVDLSLKTVFIDRFREA 824
           + + LS+K +  D   +A
Sbjct: 615 KKISLSMKALLNDNAEDA 632



 Score = 42.4 bits (98), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 372 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
           K G VV GKV  +  FGA V+   G+ AL  +  +++  I KP     VG E+  +V+  
Sbjct: 551 KVGNVVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDF 610

Query: 432 K--SKRITVTHKKTL 444
           K   K+I+++ K  L
Sbjct: 611 KKDEKKISLSMKALL 625


>gi|444433042|ref|ZP_21228188.1| 30S ribosomal protein S1 [Gordonia soli NBRC 108243]
 gi|443886106|dbj|GAC69909.1| 30S ribosomal protein S1 [Gordonia soli NBRC 108243]
          Length = 493

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 183/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 12   VAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 71

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+       ++G  V   VL+  KE K  RL+L   +        + +   ++
Sbjct: 72   KHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYERAWGTIE 118

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 119  QLKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE------- 169

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 170  --------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 205

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 206  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 264

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 265  DVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GI 318

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 319  EGLVHISELAERHVEVPDQVVSVGDDALVKVIDIDLERRRISLSLKQA 366



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 152/389 (39%), Gaps = 46/389 (11%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 26  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 85

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + + L +    V G V  V    +++ +  
Sbjct: 86  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEQLKEKDEAVKGTVIEVVKGGLILDIGL 145

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 146 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 197

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 198 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 256

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 257 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 292

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 799
               IG ++ GKV +   FG  V  EE  +    I+     H ++    V  G      +
Sbjct: 293 ---AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDALVKV 349

Query: 800 LDVAKAERLVDLSLKTVFIDRFREANSNR 828
           +D+    R + LSLK    D   E + ++
Sbjct: 350 IDIDLERRRISLSLKQANEDYTEEFDPSK 378



 Score = 47.8 bits (112), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 37  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 96

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLILSKKRAQYERAWGTIEQLKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 153 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 208

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 209 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 262

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 263 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 318

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 319 EGLVHISELAERHVEVPDQVVSVGDDALVKVIDIDLERRRISLSLKQANEDYT------E 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            F    K  M  S    G+ +          +W+EGF
Sbjct: 373 EF-DPSKYGMADSYDEQGNYIFPEGFDADTNEWLEGF 408


>gi|433462997|ref|ZP_20420565.1| 30S ribosomal protein S1 [Halobacillus sp. BAB-2008]
 gi|432188134|gb|ELK45352.1| 30S ribosomal protein S1 [Halobacillus sp. BAB-2008]
          Length = 380

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 194/428 (45%), Gaps = 77/428 (17%)

Query: 1037 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1096
            S G  VTG V K++++  L+ +   ++  + I       SEL       H+ KA     +
Sbjct: 15   SAGDIVTGKVVKIEDKQVLVDVGYKVEGIVPI-------SELS----SLHVEKA--SDAV 61

Query: 1097 SINKEKKLLRLVLRPFQDG---ISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1151
            S   E   L L ++  +D    +S + VD      +++     G+I    +  ++ G  G
Sbjct: 62   SEGDE---LTLQVKKVEDDEIVLSKRAVDADKAWQDLEAKFESGEIFEAEVKDVVKG--G 116

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
            LVV IG  L G +  + ++   V D               Y +G+ +  KV+E+ R    
Sbjct: 117  LVVDIG--LRGFIPASLVETYYVED------------FEDY-KGRTLSLKVVELDRE--- 158

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
               V LS R+ ++   S              K  E ++ L    +++G V+ +T  G F+
Sbjct: 159  QNRVILSHRAVVEEEESV-------------KKQEVLQSLEEGQVIEGTVQRLTDFGAFV 205

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
             L   +D  V +S LS  +VE        G+ V  +VLSV+  ++R+ ++LK +  +   
Sbjct: 206  NLG-GIDGLVHISQLSHQHVEKASDVVEEGQAVKVKVLSVDRDNERISLSLKAT--QPGP 262

Query: 1332 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1391
              +I   S +  GD++ G ++R+ S+G F+ +    + GL H+S++S  H+   + +   
Sbjct: 263  WHDIQ--SKVSSGDVLEGTVRRLVSFGAFVEV-FPGVEGLVHISQISNRHIGTPDEVLDE 319

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLEN 1451
            G++V+VK+L VD+  +R+SL MK               E E DE   ++  Y +    +N
Sbjct: 320  GQQVEVKVLDVDENAKRLSLSMK---------------ELERDEERADIQQYEKED--DN 362

Query: 1452 SSVAVQDM 1459
            S  ++ DM
Sbjct: 363  SGFSLSDM 370



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 136/350 (38%), Gaps = 37/350 (10%)

Query: 373 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 432
            G +V GKV+ ++    +V     V+ + P+  +S   + K       G EL  +V  V+
Sbjct: 16  AGDIVTGKVVKIEDKQVLVDVGYKVEGIVPISELSSLHVEKASDAVSEGDELTLQVKKVE 75

Query: 433 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 492
              I ++ +          L +  E+ +  I    +  + K G  V    G++GF P S 
Sbjct: 76  DDEIVLSKRAVDADKAWQDLEAKFESGE--IFEAEVKDVVKGGLVVDI--GLRGFIPASL 131

Query: 493 LGLDPGCEPSSMYHVGQV--VKCRIMS--SIPASRRINLSFMMKPTRVSEDDLVKL---- 544
           +           Y+V      K R +S   +   R  N   +     V E++ VK     
Sbjct: 132 V---------ETYYVEDFEDYKGRTLSLKVVELDREQNRVILSHRAVVEEEESVKKQEVL 182

Query: 545 -----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
                G ++ G V  +T     V +   G   G +    L+  H+E A+    V++ G  
Sbjct: 183 QSLEEGQVIEGTVQRLTDFGAFVNL---GGIDGLVHISQLSHQHVEKAS---DVVEEGQA 236

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 657
              ++L +D ++  + LS K +       + S  S      V+ G V  ++  G FV   
Sbjct: 237 VKVKVLSVDRDNERISLSLKATQPGPWHDIQSKVS---SGDVLEGTVRRLVSFGAFVEVF 293

Query: 658 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
             + G    S+  +       +    GQ V   +LDV+    R++LS+K+
Sbjct: 294 PGVEGLVHISQISNRHIGTPDEVLDEGQQVEVKVLDVDENAKRLSLSMKE 343



 Score = 47.8 bits (112), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V++G V  +  FGA V   GG+  L  +  +S   + K     + G  +  +VL 
Sbjct: 185 LEEGQVIEGTVQRLTDFGAFVNL-GGIDGLVHISQLSHQHVEKASDVVEEGQAVKVKVLS 243

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V   ++RI+++ K T       I S  +      +  G + ++   G FV  + GV+G  
Sbjct: 244 VDRDNERISLSLKATQPGPWHDIQSKVSSGD---VLEGTVRRLVSFGAFVEVFPGVEGLV 300

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             S++       P  +   GQ V+ +++     ++R++LS 
Sbjct: 301 HISQISNRHIGTPDEVLDEGQQVEVKVLDVDENAKRLSLSM 341



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 2/148 (1%)

Query: 315 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 374
           V IS ++ + V K     +EG  V+V++L         +  LKA+         S V  G
Sbjct: 214 VHISQLSHQHVEKASDVVEEGQAVKVKVLSVDRDNERISLSLKATQPGPWHDIQSKVSSG 273

Query: 375 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 432
            V++G V  + SFGA V+   GV+ L  +  +S   I  P +    G ++  +VL V   
Sbjct: 274 DVLEGTVRRLVSFGAFVEVFPGVEGLVHISQISNRHIGTPDEVLDEGQQVEVKVLDVDEN 333

Query: 433 SKRITVTHKKTLVKSKLAILSSYAEATD 460
           +KR++++ K+     + A +  Y +  D
Sbjct: 334 AKRLSLSMKELERDEERADIQQYEKEDD 361



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 114/287 (39%), Gaps = 62/287 (21%)

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQL 602
           G +V+G V  +    V+V V   GY  +G +P   L+  H+E A+     +  G E   L
Sbjct: 17  GDIVTGKVVKIEDKQVLVDV---GYKVEGIVPISELSSLHVEKAS---DAVSEGDEL-TL 69

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
            V   E   ++LS +    + A Q     +      +    V ++++ G  V     L G
Sbjct: 70  QVKKVEDDEIVLSKRAVDADKAWQDLE--AKFESGEIFEAEVKDVVKGGLVVDI--GLRG 125

Query: 663 FAPRSKAVDGQRADLSKTYYV-------GQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
           F P         A L +TYYV       G+++   +++++ E  R+ LS  ++     ++
Sbjct: 126 FIP---------ASLVETYYVEDFEDYKGRTLSLKVVELDREQNRVILS-HRAVVEEEES 175

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
              QE         +LQS +              G VIEG V    DFG  V+      +
Sbjct: 176 VKKQE---------VLQSLEE-------------GQVIEGTVQRLTDFGAFVNL---GGI 210

Query: 776 YGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 815
            G +        H + A   VE G  ++  +L V +    + LSLK 
Sbjct: 211 DGLVHISQLSHQHVEKASDVVEEGQAVKVKVLSVDRDNERISLSLKA 257


>gi|407454002|ref|YP_006733110.1| 30S ribosomal protein S1 [Chlamydia psittaci 84/55]
 gi|407460660|ref|YP_006738435.1| 30S ribosomal protein S1 [Chlamydia psittaci WC]
 gi|405780761|gb|AFS19511.1| ribosomal protein S1 [Chlamydia psittaci 84/55]
 gi|405787394|gb|AFS26138.1| ribosomal protein S1 [Chlamydia psittaci WC]
          Length = 504

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 73/392 (18%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 137  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 191

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 192  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 236

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KN+              DP    ++G  V+  VL
Sbjct: 237  PY--GAFIEIEEGIEGLIHVSEMSWVKNVV-------------DPSEVVNKGDEVEAIVL 281

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V+  +KN
Sbjct: 282  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKN 321

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +
Sbjct: 322  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGV 381

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K   S   ++ E         G ++ G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 382  KQLSSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 436

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              IE I   G+ V  K++K+D + +++SL +K
Sbjct: 437  SKIEDIISIGDSVSAKVIKLDPDHKKVSLSVK 468



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 53   EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 95

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 96   VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 139

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 140  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDK 198

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  + G+I ++  YG FI IE   + GL H
Sbjct: 199  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIH 253

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 254  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 306



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGA--ELVFRVLG 430
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+  E V   + 
Sbjct: 312 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 371

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 372 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 428

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 429 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 466



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 642  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 701
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 145  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 203

Query: 702  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 761
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 204  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 236

Query: 762  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 815
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 237  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 296

Query: 816  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 875
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 297  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 342

Query: 876  SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 935
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 343  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 395

Query: 936  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 995
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 396  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 452

Query: 996  IIAKSNKPDMKKSFL 1010
            +I     PD KK  L
Sbjct: 453  VIKLD--PDHKKVSL 465



 Score = 41.6 bits (96), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 378 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 435
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 144 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 202

Query: 436 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 494
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 203 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 259

Query: 495 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 550
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 260 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 317

Query: 551 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 603
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 318 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 368

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 662
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 369 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 424

Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 425 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 469


>gi|402313821|ref|ZP_10832731.1| S1 RNA binding domain protein [Lachnospiraceae bacterium ICM7]
 gi|400365603|gb|EJP18654.1| S1 RNA binding domain protein [Lachnospiraceae bacterium ICM7]
          Length = 368

 Score = 82.4 bits (202), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 178/394 (45%), Gaps = 72/394 (18%)

Query: 1078 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1134
            L E  +  H G+ V G V+ + +++ +L +  +   DGI  ++ + SNDN   ++T ++ 
Sbjct: 10   LDESFKTLHTGEVVNGKVIDVKEDQIILNVGFKS--DGIITRS-EYSNDNGLDLRTVVNV 66

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD +  ++ KI  G G +++      Y R+                 D G       ++ 
Sbjct: 67   GDDMEAKVLKINDGEGQVLLS-----YKRL---------------AQDRGNKKLEDAFNN 106

Query: 1195 GQFVKCKVLEISRTVRGTFHV-----ELSLRSSLDGMSSTNSSDLSTDVDTP-------- 1241
             + +  KV+++   V G   V      + + +SL  +S T   DLS   DT         
Sbjct: 107  HEVLTGKVVQV---VEGGLSVVVEDARVFIPASL--VSDTFERDLSKYKDTEIEFVITEF 161

Query: 1242 ----------------GKHLEK----IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1281
                             K  E+     E ++P  +++G VKNVT  G F+ L    D  +
Sbjct: 162  NPKRRRIIGDRKQLLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVDLG-GADGLL 220

Query: 1282 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1341
             +S +S G VE+P+K F  G  V   +  +    +++ +++K  D      +E       
Sbjct: 221  HISEMSWGRVENPKKVFKSGDTVTAFIKDIS--GEKIALSMKFPDQNPWLDAE----EKF 274

Query: 1342 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1401
              G++V G++ R+  +G F+ I N  +  L HVS++S DHV+    + + G++V+  I++
Sbjct: 275  ARGNVVKGKVARMTDFGAFVEISN-GVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVE 333

Query: 1402 VDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
             ++  ++ISL +K+    N+    + +   ESDE
Sbjct: 334  FNEADKKISLSIKALTQANEELEKENARNSESDE 367



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 17/244 (6%)

Query: 290 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSCVRVRILG 344
           KVV+V  G GL + +    V  PA + +SD  E ++ K     +E    E +  R RI+G
Sbjct: 113 KVVQVVEG-GLSVVVEDARVFIPASL-VSDTFERDLSKYKDTEIEFVITEFNPKRRRIIG 170

Query: 345 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
            R        +L A   E        + PG V++G V  V  FGA V   GG   L  + 
Sbjct: 171 DRKQ------LLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVDL-GGADGLLHIS 223

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            MS   +  P K FK G  +   +  +  ++I ++ K       L     +A      + 
Sbjct: 224 EMSWGRVENPKKVFKSGDTVTAFIKDISGEKIALSMKFPDQNPWLDAEEKFARGN---VV 280

Query: 465 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            G + ++   G FV   NGV      S++  D   +PS +  VG  V+  I+    A ++
Sbjct: 281 KGKVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKK 340

Query: 525 INLS 528
           I+LS
Sbjct: 341 ISLS 344



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 138/342 (40%), Gaps = 49/342 (14%)

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDDL 541
           G   RSE   D G +  ++ +VG  ++ +++       ++ LS+      +  +  ED  
Sbjct: 45  GIITRSEYSNDNGLDLRTVVNVGDDMEAKVLKINDGEGQVLLSYKRLAQDRGNKKLEDAF 104

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
                L   VV VV     VV   A+ +    IP   ++D  E    +        EF  
Sbjct: 105 NNHEVLTGKVVQVVEGGLSVVVEDARVF----IPASLVSDTFERD--LSKYKDTEIEF-- 156

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           ++   N     ++  +  L+ + ++    A    I P  V+ G V N+ + G FV  LG 
Sbjct: 157 VITEFNPKRRRIIGDRKQLLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVD-LGG 215

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
             G    S+   G+  +  K +  G +V + I D++ E  +I LS+K          F  
Sbjct: 216 ADGLLHISEMSWGRVENPKKVFKSGDTVTAFIKDISGE--KIALSMK----------FPD 263

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
           ++  L+ +                 E F  G+V++GKV    DFG  V      D    +
Sbjct: 264 QNPWLDAE-----------------EKFARGNVVKGKVARMTDFGAFVEISNGVDALLHV 306

Query: 780 T-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 816
           +     H +     ++ G  ++A I++  +A++ + LS+K +
Sbjct: 307 SQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKKISLSIKAL 348


>gi|333919158|ref|YP_004492739.1| RNA binding S1 domain-containing protein [Amycolicicoccus subflavus
            DQS3-9A1]
 gi|333481379|gb|AEF39939.1| RNA binding S1 domain protein [Amycolicicoccus subflavus DQS3-9A1]
          Length = 489

 Score = 82.4 bits (202), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 183/408 (44%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + +++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 11   VAINDIGSAEEFLAAVDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 70

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +PSE+       ++G  V   VL+  KE K  RL+L   +        + +   ++
Sbjct: 71   KHDVDPSEV------VNVGDEVEALVLT--KEDKDGRLILSKKR-----AQYERAWGTIE 117

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 118  ELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 168

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 169  --------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 204

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L  + + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 205  QLQKSQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVL 263

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 264  DVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GI 317

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HV+  + +    +   VK++ +D E+RRISL +K +
Sbjct: 318  EGLVHISELAERHVEVPDQVVAVNDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 147/364 (40%), Gaps = 50/364 (13%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 522
           I  G I K+++    +      +G  P  EL +    +PS + +VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKEDKD 97

Query: 523 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-IHPN 637
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  H +  +
Sbjct: 150 ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKS 209

Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
            V  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 301

Query: 758 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAA-------ILDVAKAERLVD 810
            +   FG  V  EE   + G +   +LA   VE    + A        ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVNDDAMVKVIDIDLERRRIS 359

Query: 811 LSLK 814
           LSLK
Sbjct: 360 LSLK 363



 Score = 43.9 bits (102), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 147/354 (41%), Gaps = 31/354 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
              +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KSQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            G    S+  +       +   V       ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVNDDAMVKVIDIDLERRRISLSLKQANEEYTE 371


>gi|262202770|ref|YP_003273978.1| RNA-binding S1 domain-containing protein [Gordonia bronchialis DSM
            43247]
 gi|262086117|gb|ACY22085.1| RNA binding S1 domain protein [Gordonia bronchialis DSM 43247]
          Length = 487

 Score = 82.4 bits (202), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  V-DEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 155/391 (39%), Gaps = 50/391 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  +E   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 798 AILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.0 bits (110), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPSKYGMADSYDEQGNYIFPEGFDADTNEWLEGF 407


>gi|441520462|ref|ZP_21002129.1| 30S ribosomal protein S1 [Gordonia sihwensis NBRC 108236]
 gi|441459908|dbj|GAC60090.1| 30S ribosomal protein S1 [Gordonia sihwensis NBRC 108236]
          Length = 489

 Score = 82.4 bits (202), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGSAEDFLAAVDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VTVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          V+ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------VEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D ++RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 152/389 (39%), Gaps = 46/389 (11%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AVDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  + +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLNQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 799
               IG ++ GKV +   FG  V  EE  +    I+     H ++    V  G      +
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKV 348

Query: 800 LDVAKAERLVDLSLKTVFIDRFREANSNR 828
           +D+    R + LSLK    D   E + ++
Sbjct: 349 IDIDLDRRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.8 bits (112), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 149/354 (42%), Gaps = 31/354 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ V+ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            G    S+  +       +   VG      ++D++ +  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQANEDYTE 371


>gi|326382653|ref|ZP_08204344.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
 gi|326198772|gb|EGD55955.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
          Length = 490

 Score = 82.4 bits (202), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGSAEDFLAAVDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VTVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          V+ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------VEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D ++RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 152/389 (39%), Gaps = 46/389 (11%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           A+ S+     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AVDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  + +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLNQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 799
               IG ++ GKV +   FG  V  EE  +    I+     H ++    V  G      +
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKV 348

Query: 800 LDVAKAERLVDLSLKTVFIDRFREANSNR 828
           +D+    R + LSLK    D   E + ++
Sbjct: 349 IDIDLDRRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.8 bits (112), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 149/354 (42%), Gaps = 31/354 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ V+ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            G    S+  +       +   VG      ++D++ +  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQANEDYTE 371


>gi|228996709|ref|ZP_04156346.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
 gi|228763028|gb|EEM11938.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
          Length = 382

 Score = 82.4 bits (202), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 176/390 (45%), Gaps = 62/390 (15%)

Query: 1038 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1097
            +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA     L 
Sbjct: 17   VGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKASDVVKLD 65

Query: 1098 INKEKKLLRLVLRPFQDG---ISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
             N E K+++L     +D    +S + VD       +Q     G++    +  I++G  GL
Sbjct: 66   QNLELKVIKL-----EDDDLVLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNG--GL 118

Query: 1153 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1212
            VV +G   +      E+  +              +  + Y +G+ +  K++E+ R     
Sbjct: 119  VVDLGVRGFIPASLVEMYYV--------------EDFTDY-KGKTLAVKIVELDRE---K 160

Query: 1213 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
              V LS ++ ++              +   K  E I  L    +V+G V+ +T  G F+ 
Sbjct: 161  NRVILSHKAVVEQ-------------ELESKKKEAISSLKEGDVVEGTVQRLTDFGAFVN 207

Query: 1273 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1332
            +   +D  V +S +S   VE P      G+ V  +VLSV+  ++R+ +++K      A  
Sbjct: 208  VG-DVDGLVHISQISHDRVEQPSDVLTQGQSVKVKVLSVDADTQRISLSIKA-----AQP 261

Query: 1333 SEINNLS-NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1391
                N+S  +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   
Sbjct: 262  GPWENVSAEVKAGDIREGIVKRIVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEM 320

Query: 1392 GEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 321  GQEVKVKVLEVHAAEKRISLSIKEAVEENN 350



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G VV+G V  +  FGA V   G V  L  +  +S   + +P      G  +  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GDVDGLVHISQISHDRVEQPSDVLTQGQSVKVKV 242

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   ++RI+++ K          +S+  +A D  I  G + +I   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVSAEVKAGD--IREGIVKRIVTFGAFVEILPGVEG 299

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               S++       P+ +  +GQ VK +++    A +RI+LS 
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSI 342



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 124/273 (45%), Gaps = 44/273 (16%)

Query: 1088 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1147
            GK +   ++ +++EK   R++L      + ++ ++       + + EGD+V G + ++  
Sbjct: 146  GKTLAVKIVELDREKN--RVILS--HKAVVEQELESKKKEAISSLKEGDVVEGTVQRLTD 201

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
               G  V +G  + G VH +++ +  V  P         D L+   +GQ VK KVL +  
Sbjct: 202  F--GAFVNVG-DVDGLVHISQISHDRVEQP--------SDVLT---QGQSVKVKVLSVDA 247

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                T  + LS++++                  PG       ++    I +G VK + + 
Sbjct: 248  D---TQRISLSIKAA-----------------QPGPWENVSAEVKAGDIREGIVKRIVTF 287

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK---- 1323
            G F+ +   ++  V +S +++ +V++P +   +G+ V  +VL V    KR+ +++K    
Sbjct: 288  GAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAVE 347

Query: 1324 -TSDSRTASQSEINNLS-NLHVGDIVIGQIKRV 1354
              +++   SQ E  + S      DI+  Q+K++
Sbjct: 348  ENNETEDYSQYEPTSESATFQFSDIIGEQLKKL 380



 Score = 45.1 bits (105), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 157/390 (40%), Gaps = 50/390 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G VV G V  V+    +V        + P+  ++   I K     K+   L  +V+ ++ 
Sbjct: 18  GDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVKLDQNLELKVIKLED 77

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
             + ++  K  V ++ A +    + T   +    +  I   G  V    GV+GF P S +
Sbjct: 78  DDLVLS--KRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDL--GVRGFIPASLV 133

Query: 494 GLDPGCEPSSMYHV-------GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----- 541
                     MY+V       G+ +  +I+       R+ LS       V E +L     
Sbjct: 134 ---------EMYYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA----VVEQELESKKK 180

Query: 542 -----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 595
                +K G +V G V  +T     V V   G   G +    ++ D +E  +    V+  
Sbjct: 181 EAISSLKEGDVVEGTVQRLTDFGAFVNV---GDVDGLVHISQISHDRVEQPS---DVLTQ 234

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGC 652
           G     ++L +D ++  + LS     I +AQ  P +  ++ +    +  G V  I+  G 
Sbjct: 235 GQSVKVKVLSVDADTQRISLS-----IKAAQPGPWENVSAEVKAGDIREGIVKRIVTFGA 289

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           FV  L  + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++   +
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAVEEN 349

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELK 742
            +     ++    E  A  Q S   G +LK
Sbjct: 350 NETEDYSQYEPTSES-ATFQFSDIIGEQLK 378



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 120/291 (41%), Gaps = 64/291 (21%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLAD-HLEHATVMKSVIKPGYEF 599
           +++G +V+G V  V    V+V V   GY + G IP   LA+ H+E A+    V+K     
Sbjct: 15  LQVGDVVTGSVTKVEEKQVLVNV---GYKTDGVIPISELANVHIEKAS---DVVKLDQNL 68

Query: 600 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
            +L V+  E  +L+LS +   +++ +             V    V +I+  G  V    R
Sbjct: 69  -ELKVIKLEDDDLVLSKRA--VDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDLGVR 125

Query: 660 LTGFAPRSKAVDGQRADLSKTYYV-------GQSVRSNILDVNSETGRITLSLKQSCCSS 712
             GF P         A L + YYV       G+++   I++++ E  R+ LS K      
Sbjct: 126 --GFIP---------ASLVEMYYVEDFTDYKGKTLAVKIVELDREKNRVILSHK------ 168

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNG-SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 771
             A   QE          L+S K    S LK       G V+EG V    DFG  V+   
Sbjct: 169 --AVVEQE----------LESKKKEAISSLKE------GDVVEGTVQRLTDFGAFVNV-- 208

Query: 772 HSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKT 815
             DV G +   Q++   VE        G  ++  +L V    + + LS+K 
Sbjct: 209 -GDVDGLVHISQISHDRVEQPSDVLTQGQSVKVKVLSVDADTQRISLSIKA 258


>gi|241896285|ref|ZP_04783581.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
 gi|241870526|gb|EER74277.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
          Length = 405

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 140/280 (50%), Gaps = 38/280 (13%)

Query: 1136 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1195
            DIV   +++ + G  GLVV +   + G V  + ++N  V D            L+ Y +G
Sbjct: 114  DIVEAPVTQAVKG--GLVVDV-EGVRGFVPASMIENRFVQD------------LNQY-KG 157

Query: 1196 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
            Q ++ K++EI+        + LS R   D ++   S+ L+   D          +LS   
Sbjct: 158  QTIRAKIIEINAA---DSRLILSRR---DVLNEERSAALARIFD----------ELSVGD 201

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +++G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  
Sbjct: 202  VIEGKVARMTNFGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPER 260

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ +++K +       +          G ++ G +KRV  +G F+ +    + GL HVS
Sbjct: 261  ERISLSIKATQPGPWDAA----AEKAPAGTVLEGTVKRVVDFGAFVEV-FPGVEGLVHVS 315

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            ++S  H+ N   + +AG+KV+VK+L V+ E++R+SL +K+
Sbjct: 316  QISHKHIANPSDVLKAGDKVQVKVLDVNPERQRLSLSIKA 355



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
            G+ +  +++ +     R+ ++ +   ++ R+A+ + I     L VGD++ G++ R+ ++G
Sbjct: 157  GQTIRAKIIEINAADSRLILSRRDVLNEERSAALARI--FDELSVGDVIEGKVARMTNFG 214

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             FI +   +  GL HVSE+S + V     +   GE+VKVK+L +D E+ RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPERERISLSIKAT 270



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
           G V++GKV  + +FGA +   GGV  L  +  +S   + +P     VG E+  +VLG+  
Sbjct: 200 GDVIEGKVARMTNFGAFIDL-GGVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDP 258

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           + +RI+++ K T      A        T   +  G + ++   G FV  + GV+G    S
Sbjct: 259 ERERISLSIKATQPGPWDAAAEKAPAGT---VLEGTVKRVVDFGAFVEVFPGVEGLVHVS 315

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++       PS +   G  V+ +++   P  +R++LS 
Sbjct: 316 QISHKHIANPSDVLKAGDKVQVKVLDVNPERQRLSLSI 353



 Score = 47.0 bits (110), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 155/352 (44%), Gaps = 27/352 (7%)

Query: 369 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMS---EFEIVKPGKKFKVGAE 423
           ++VK G VVKG+V+A+D +   IV   G GV+ + PL  ++   + ++    K   V   
Sbjct: 16  AEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDADVNDLVKVGDVLDL 75

Query: 424 LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
           +V   +G   +  +    K  ++++ A     ++ +   I    +T+  K G  V    G
Sbjct: 76  VVVSTIGSDKEGGSYLLSKRRLEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDV-EG 134

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSE--- 538
           V+GF P S +  +   +  + Y  GQ ++ +I+    A  R+ LS   ++   R +    
Sbjct: 135 VRGFVPASMIE-NRFVQDLNQYK-GQTIRAKIIEINAADSRLILSRRDVLNEERSAALAR 192

Query: 539 -DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
             D + +G ++ G V  +T     + +   G   G +    ++   E  +    V+  G 
Sbjct: 193 IFDELSVGDVIEGKVARMTNFGAFIDL---GGVDGLVHVSEISH--ERVSQPSDVLSVGE 247

Query: 598 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFV 654
           E   ++L LD E   + LS     I + Q  P DA+       +V+ G V  +++ G FV
Sbjct: 248 EVKVKVLGLDPERERISLS-----IKATQPGPWDAAAEKAPAGTVLEGTVKRVVDFGAFV 302

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
                + G    S+      A+ S     G  V+  +LDVN E  R++LS+K
Sbjct: 303 EVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVQVKVLDVNPERQRLSLSIK 354



 Score = 44.7 bits (104), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 30/230 (13%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT--VMKSVIKPGYEF 599
           VK+G +V G V  +  N  V+  I     +G IP   L    +     ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDADVNDLVKVGDVLDLVV 77

Query: 600 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
              +  D E  + LLS +   + + +     AS    + +V   V   ++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDVEG- 134

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS +             
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRD------------ 180

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
              L EE+ A L          +  +   +G VIEGKV    +FG  +  
Sbjct: 181 --VLNEERSAALA---------RIFDELSVGDVIEGKVARMTNFGAFIDL 219



 Score = 40.8 bits (94), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 37/185 (20%)

Query: 639 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 698
           V+ G V  +   G F+  LG + G    S+    + +  S    VG+ V+  +L ++ E 
Sbjct: 202 VIEGKVARMTNFGAFID-LGGVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPER 260

Query: 699 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 758
            RI+LS+K +     DA+                            E    G+V+EG V 
Sbjct: 261 ERISLSIKATQPGPWDAA---------------------------AEKAPAGTVLEGTVK 293

Query: 759 ESNDFGVVVSFEEHSDVYGF-----ITHHQLAGAT--VESGSVIQAAILDVAKAERLVDL 811
              DFG  V  E    V G      I+H  +A  +  +++G  +Q  +LDV    + + L
Sbjct: 294 RVVDFGAFV--EVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVQVKVLDVNPERQRLSL 351

Query: 812 SLKTV 816
           S+K +
Sbjct: 352 SIKAL 356


>gi|308231891|ref|ZP_07414153.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001]
 gi|308369488|ref|ZP_07417965.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002]
 gi|308375631|ref|ZP_07444575.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007]
 gi|308376775|ref|ZP_07439993.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008]
 gi|308377781|ref|ZP_07480385.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009]
 gi|308378993|ref|ZP_07484583.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010]
 gi|308380132|ref|ZP_07488808.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011]
 gi|308215731|gb|EFO75130.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001]
 gi|308327429|gb|EFP16280.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002]
 gi|308345717|gb|EFP34568.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007]
 gi|308350016|gb|EFP38867.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008]
 gi|308354653|gb|EFP43504.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009]
 gi|308358609|gb|EFP47460.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010]
 gi|308362535|gb|EFP51386.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011]
          Length = 392

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 127/268 (47%), Gaps = 39/268 (14%)

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
            GGL++ IG   +      E++ +    P  G +               ++ K++E+ +  
Sbjct: 47   GGLILDIGLRGFLPASLVEMRRVRDLQPYIGKE---------------IEAKIIELDKNR 91

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
                +V LS R+ L+   S   S+              + +L    I +G V ++ + G 
Sbjct: 92   N---NVVLSRRAWLEQTQSEVRSEF-------------LNNLQKGTIRKGVVSSIVNFGA 135

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +    
Sbjct: 136  FVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKAT---- 190

Query: 1330 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
              +    + +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +
Sbjct: 191  -QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQV 248

Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKSS 1416
               G+   VK++ +D E+RRISL +K +
Sbjct: 249  VAVGDDAMVKVIDIDLERRRISLSLKQA 276



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           ++++ G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   V
Sbjct: 115 NNLQKGTIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEV 173

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +R++++ K T          ++A      I  G +TK+   G FVR   G++G
Sbjct: 174 LDVDMDRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEG 230

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL       P  +  VG     +++      RRI+LS 
Sbjct: 231 LVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSL 273


>gi|296119662|ref|ZP_06838220.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
 gi|295967545|gb|EFG80812.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
          Length = 489

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 175/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELQAKEEPVTGTVIEVVKG--GLIL 138

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +   +P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG---------------QELEAKIIELDKQRN---N 180

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAFLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   GE
Sbjct: 282  WRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGE 340

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +V VK++ +D E+RRISL +K +
Sbjct: 341  EVMVKVIDIDLERRRISLSVKQA 363



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           ++G    SEL       P  + +VG+ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGEEVMVKVIDIDLERRRISLS 359



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEEL-QAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+          +   VG+ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGEEVMVKVIDIDLERRRISLSVKQA-----DEDYTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDSETNEWKEGF 405


>gi|332287411|ref|YP_004422312.1| 30S ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|384451565|ref|YP_005664163.1| 30S ribosomal protein S1 [Chlamydophila psittaci 01DC11]
 gi|384452538|ref|YP_005665135.1| 30S ribosomal protein S1 [Chlamydophila psittaci 08DC60]
 gi|384453514|ref|YP_005666110.1| 30S ribosomal protein S1 [Chlamydophila psittaci C19/98]
 gi|384454493|ref|YP_005667088.1| 30S ribosomal protein S1 [Chlamydophila psittaci 02DC15]
 gi|406592329|ref|YP_006739509.1| 30S ribosomal protein S1 [Chlamydia psittaci CP3]
 gi|406593415|ref|YP_006740594.1| 30S ribosomal protein S1 [Chlamydia psittaci NJ1]
 gi|406594916|ref|YP_006741629.1| 30S ribosomal protein S1 [Chlamydia psittaci MN]
 gi|407455308|ref|YP_006734199.1| 30S ribosomal protein S1 [Chlamydia psittaci GR9]
 gi|407456694|ref|YP_006735267.1| 30S ribosomal protein S1 [Chlamydia psittaci VS225]
 gi|407458042|ref|YP_006736347.1| 30S ribosomal protein S1 [Chlamydia psittaci WS/RT/E30]
 gi|407459284|ref|YP_006737387.1| 30S ribosomal protein S1 [Chlamydia psittaci M56]
 gi|325506682|gb|ADZ18320.1| 30S ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|334692295|gb|AEG85514.1| 30S ribosomal protein S1 [Chlamydophila psittaci C19/98]
 gi|334693275|gb|AEG86493.1| 30S ribosomal protein S1 [Chlamydophila psittaci 01DC11]
 gi|334694250|gb|AEG87467.1| 30S ribosomal protein S1 [Chlamydophila psittaci 02DC15]
 gi|334695227|gb|AEG88443.1| 30S ribosomal protein S1 [Chlamydophila psittaci 08DC60]
 gi|405781851|gb|AFS20600.1| ribosomal protein S1 [Chlamydia psittaci GR9]
 gi|405783348|gb|AFS22096.1| ribosomal protein S1 [Chlamydia psittaci MN]
 gi|405783955|gb|AFS22702.1| ribosomal protein S1 [Chlamydia psittaci VS225]
 gi|405785172|gb|AFS23918.1| ribosomal protein S1 [Chlamydia psittaci WS/RT/E30]
 gi|405786252|gb|AFS24997.1| ribosomal protein S1 [Chlamydia psittaci M56]
 gi|405788201|gb|AFS26944.1| ribosomal protein S1 [Chlamydia psittaci CP3]
 gi|405789287|gb|AFS28029.1| ribosomal protein S1 [Chlamydia psittaci NJ1]
          Length = 501

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 73/392 (18%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 137  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 191

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 192  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 236

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KN+              DP    ++G  V+  VL
Sbjct: 237  PY--GAFIEIEEGIEGLIHVSEMSWVKNVV-------------DPSEVVNKGDEVEAIVL 281

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V+  +KN
Sbjct: 282  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKN 321

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +
Sbjct: 322  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGV 381

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K   S   ++ E         G ++ G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 382  KQLSSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 436

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              IE I   G+ V  K++K+D + +++SL +K
Sbjct: 437  SKIEDIISIGDSVSAKVIKLDPDHKKVSLSVK 468



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 53   EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 95

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 96   VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 139

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 140  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDK 198

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  + G+I ++  YG FI IE   + GL H
Sbjct: 199  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIH 253

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 254  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 306



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGA--ELVFRVLG 430
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+  E V   + 
Sbjct: 312 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 371

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 372 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 428

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 429 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 466



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 642  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 701
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 145  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 203

Query: 702  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 761
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 204  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 236

Query: 762  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 815
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 237  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 296

Query: 816  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 875
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 297  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 342

Query: 876  SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 935
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 343  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 395

Query: 936  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 995
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 396  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 452

Query: 996  IIAKSNKPDMKKSFL 1010
            +I     PD KK  L
Sbjct: 453  VIKLD--PDHKKVSL 465



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 378 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 435
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 144 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 202

Query: 436 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 494
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 203 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 259

Query: 495 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 550
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 260 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 317

Query: 551 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 603
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 318 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 368

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 662
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 369 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 424

Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 425 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 469


>gi|84999536|ref|XP_954489.1| rna-associated protein [Theileria annulata]
 gi|65305487|emb|CAI73812.1| rna-associated protein, putative [Theileria annulata]
          Length = 690

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 113/469 (24%), Positives = 185/469 (39%), Gaps = 57/469 (12%)

Query: 5   NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP----ILDNEIEANEDNLLPT 60
           +I+ G  + G VA V    L I +   + G A+ +D  D       + ++  + DN L +
Sbjct: 66  SITPGTLVLGSVALVCPSGLRIHILNNIVGFAKYSDLFDSADSDTNNGDLANDRDNRLSS 125

Query: 61  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 120
              +G  V C VL+       +    + LSL+ SL+ + L ++ +  G++L A V S ED
Sbjct: 126 PIKIGSTVICYVLK-------VNYSYLSLSLKPSLINRDLRVDNIYPGLILPATVTSQED 178

Query: 121 HGYILHFG-LPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV------YLSS 173
           HG  + F  +    GF+  +     S   VK  L     + S      V       ++  
Sbjct: 179 HGLSITFNSVSGLNGFIMYDEQGRES---VKSILKSSYPINSTVNVAVVTVNAERGFVKC 235

Query: 174 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI----LEN-------GVMLSFLTYFTG 222
               + K       G+  D L PG+++   V ++    LE        G  +  L     
Sbjct: 236 QWPWLYKTPIDTEAGLVFDTLKPGLLLKAEVLNVHNIVLEGSSKSVFAGYTVKCLGSINE 295

Query: 223 TVDIFHLQNTFPTTNWKNDYNQH-------KKVNARILFVDPTSRAVGLTLNPYLLHNRA 275
           T+   H   +F  TN  N+           + V  RI+ VD  ++ + +++   +L  + 
Sbjct: 296 TISSLH---SFAQTNISNEVEMEDFYSLVGETVECRIIQVDFENKKLHMSMQSQILKWKG 352

Query: 276 PPSHV--KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP--------AYVTISDVAE--- 322
           P       + +     K+ +      LL  IP T              Y  I DV +   
Sbjct: 353 PMGQAFKPINNKIINCKITQCFSSGFLLESIPPTGDDINNSDKRVLHCYCAIHDVLDDKS 412

Query: 323 --EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK 380
             EE      KY  GS    R++ F +   L    +K+S       T  ++    VVKGK
Sbjct: 413 LTEETIFSSSKYSVGSVHECRVIEFDYFTRLTRVSMKSSLISEEYVTPFELSASDVVKGK 472

Query: 381 VIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           +I + + GAIVQ    V    PL H+++  + K  +  KVG  L  RVL
Sbjct: 473 IINLVNSGAIVQISSLVFGKVPLGHLTQVPVTKLPEGLKVGRNLRLRVL 521


>gi|87306426|ref|ZP_01088573.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
 gi|87290605|gb|EAQ82492.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
          Length = 636

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 182/390 (46%), Gaps = 66/390 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKA 1090
            ++ IGQR  G V  + +  A + +   +   L I D ++     P+E+        I   
Sbjct: 216  ELEIGQRRKGVVKNIADFGAFVDLG-GIDGLLHITDMSWGRIGHPTEV------VKIDDE 268

Query: 1091 VTGHVLSINKEKKLLRLVLRPFQ----DGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
            V   +L+I+ E++ + L ++  Q    DG+  K               G  V G++  ++
Sbjct: 269  VEVQILNIDHERQKIALGMKQMQPSPWDGVEGKY------------PVGSKVRGQVVNVM 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
            S   G  V++   + G VH +E+           + +    P    + G  +   VL I+
Sbjct: 317  SY--GAFVKLEEGIEGLVHISEMS----------WTKRISHPSEVVNIGDEIDVVVLGIN 364

Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNVT 1265
            +  +     E+SL     GM  T S+             E I++  P   IV+G V+N+T
Sbjct: 365  KEKQ-----EISL-----GMKQTQSN-----------PWENIKERYPVESIVKGKVRNLT 403

Query: 1266 SKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
            + G F+ L   +D  + +S++S    +  P +    G+ V  +VL++E   +R+ + LK 
Sbjct: 404  NYGAFVELEEGIDGLLHVSDMSWTRKIGHPSEMLEKGQEVECKVLNIEEDRRRIALGLKQ 463

Query: 1325 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1384
             D    + S  +         +V G++ ++ ++G+F+ +E+  L GL H+SEL+++ V+N
Sbjct: 464  MDLDPWASSIPDKY---QPNQLVKGKVTKITNFGVFVGLED-GLEGLLHISELADEKVEN 519

Query: 1385 IETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             E + + G+ ++VKIL+VD ++R+I L  K
Sbjct: 520  PEDVVKVGDDIEVKILRVDTDERKIGLSRK 549



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 142/348 (40%), Gaps = 31/348 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G   KG V  +  FGA V   GG+  L  +  MS   I  P +  K+  E+  ++L +  
Sbjct: 220 GQRRKGVVKNIADFGAFVDL-GGIDGLLHITDMSWGRIGHPTEVVKIDDEVEVQILNIDH 278

Query: 434 KR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           +R  I +  K+        +   Y   +      G +  +  +G FV+   G++G    S
Sbjct: 279 ERQKIALGMKQMQPSPWDGVEGKYPVGSK---VRGQVVNVMSYGAFVKLEEGIEGLVHIS 335

Query: 492 ELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 546
           E+        PS + ++G  +   ++      + I+L   MK T+ +  + +K    + S
Sbjct: 336 EMSWTKRISHPSEVVNIGDEIDVVVLGINKEKQEISLG--MKQTQSNPWENIKERYPVES 393

Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFD- 600
           +V G V  +T     V +      +G     H++D      + H + M   ++ G E + 
Sbjct: 394 IVKGKVRNLTNYGAFVEL-----EEGIDGLLHVSDMSWTRKIGHPSEM---LEKGQEVEC 445

Query: 601 QLLVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           ++L ++ +   + L  K   L   A  +P       PN +V G V  I   G FV     
Sbjct: 446 KVLNIEEDRRRIALGLKQMDLDPWASSIPD---KYQPNQLVKGKVTKITNFGVFVGLEDG 502

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
           L G    S+  D +  +      VG  +   IL V+++  +I LS K+
Sbjct: 503 LEGLLHISELADEKVENPEDVVKVGDDIEVKILRVDTDERKIGLSRKR 550



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 159/410 (38%), Gaps = 70/410 (17%)

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLG 658
           ++L +D E  N+++S + SLI   +Q   D+    +       G V NI + G FV  LG
Sbjct: 183 EVLKIDEERRNIVVS-RRSLIEKKRQKDRDSLLQELEIGQRRKGVVKNIADFGAFVD-LG 240

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 718
            + G    +    G+    ++   +   V   IL+++ E  +I L +KQ           
Sbjct: 241 GIDGLLHITDMSWGRIGHPTEVVKIDDEVEVQILNIDHERQKIALGMKQ----------- 289

Query: 719 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------H 772
                       +Q S  +G E K    + +GS + G+V     +G  V  EE      H
Sbjct: 290 ------------MQPSPWDGVEGK----YPVGSKVRGQVVNVMSYGAFVKLEEGIEGLVH 333

Query: 773 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 832
                +          V  G  I   +L + K ++ + L +K        +  SN     
Sbjct: 334 ISEMSWTKRISHPSEVVNIGDEIDVVVLGINKEKQEISLGMK--------QTQSNPWENI 385

Query: 833 KKRKREASKDLG-VHQTVN--AIVEIVK--ENYLVLSLPEYNHSIGYASVSDYNTQKFPQ 887
           K+R    S   G V    N  A VE+ +  +  L +S   +   IG+           P 
Sbjct: 386 KERYPVESIVKGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKIGH-----------PS 434

Query: 888 KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEIT 947
           +    GQ V   V+ +       R+ L LK +     +SS   K    Y    LV+ ++T
Sbjct: 435 EMLEKGQEVECKVLNIEEDRR--RIALGLKQMDLDPWASSIPDK----YQPNQLVKGKVT 488

Query: 948 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 997
           +I    + +    G  G +HI+E+ D+K   VEN     K+G  +  +I+
Sbjct: 489 KITNFGVFVGLEDGLEGLLHISELADEK---VENPEDVVKVGDDIEVKIL 535



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 109/487 (22%), Positives = 192/487 (39%), Gaps = 83/487 (17%)

Query: 366 FTHSD-VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP--GKKFKVGA 422
           F H + V+   +V G ++ VD    ++   G  +   P     E +   P  G K KV  
Sbjct: 35  FEHEESVELNKIVDGTILRVDDEFVLIDVGGKSEGSIPRDEWDEEDEDPPKIGDKIKVLV 94

Query: 423 ELVFRVLGVKSK---RITVTHKKTL-VKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 478
           E +    G        IT++ +K   +      +SS  E     +  G + +  K G  V
Sbjct: 95  EDIEDEFGRTDDPHGMITLSKRKAQKIIEWDTTMSSIEEGN---VVEGTVVRKIKGGLLV 151

Query: 479 RFYNGVQGFAPRSELGLDPGCEPSSMY-HVGQVVKCRIMS------SIPASRRINLSFMM 531
               GV  F P S++ +     PS +  ++G+ V+C ++       +I  SRR   S + 
Sbjct: 152 DI--GVNVFLPASQVDI---RRPSDIADYIGKKVECEVLKIDEERRNIVVSRR---SLIE 203

Query: 532 KPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLE 584
           K  +   D L++   +G    GVV  +      V +   G   G +   H+ D     + 
Sbjct: 204 KKRQKDRDSLLQELEIGQRRKGVVKNIADFGAFVDL---GGIDGLL---HITDMSWGRIG 257

Query: 585 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVH 641
           H T    V+K   E + Q+L +D+E   + L  K       Q  P D     +P  S V 
Sbjct: 258 HPT---EVVKIDDEVEVQILNIDHERQKIALGMK-----QMQPSPWDGVEGKYPVGSKVR 309

Query: 642 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGR 700
           G V N++  G FV+    + G    S+    +R +  S+   +G  +   +L +N E   
Sbjct: 310 GQVVNVMSYGAFVKLEEGIEGLVHISEMSWTKRISHPSEVVNIGDEIDVVVLGINKEKQE 369

Query: 701 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 760
           I+L +KQ+   S     ++E + +E                         S+++GKV   
Sbjct: 370 ISLGMKQT--QSNPWENIKERYPVE-------------------------SIVKGKVRNL 402

Query: 761 NDFGVVVSFEEHSDVYGFITHHQLA------GATVESGSVIQAAILDVAKAERLVDLSLK 814
            ++G  V  EE  D    ++              +E G  ++  +L++ +  R + L LK
Sbjct: 403 TNYGAFVELEEGIDGLLHVSDMSWTRKIGHPSEMLEKGQEVECKVLNIEEDRRRIALGLK 462

Query: 815 TVFIDRF 821
            + +D +
Sbjct: 463 QMDLDPW 469


>gi|260101629|ref|ZP_05751866.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
 gi|417007625|ref|ZP_11945400.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
 gi|260084562|gb|EEW68682.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
 gi|328467366|gb|EGF38444.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
          Length = 403

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGGFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKIKVIGIDDDR 258

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +++K ++     Q+     ++L+ GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G V++GKV  + +FG  +   GGV  L  +  +S   + KP    K G ++  +V+G+  
Sbjct: 198 GDVIEGKVSRLTNFGGFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKIKVIGIDD 256

Query: 434 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 487
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S  D
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSSD 362



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGG 213

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            FI +   +  GL H+SE+S  HVD    + +AG+ VK+K++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKIKVIGIDDDRHRISLSIKQT 268



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 34/197 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD++ G++S+ L+  GG +   G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSR-LTNFGGFIDVGG--VDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++ +                  P    +   DL+  
Sbjct: 244  GQDVKIKVIGIDDD---RHRISLSIKQT-----------------EPSPFEQATADLNEG 283

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1315 SKRVEVTLKTSDSRTAS 1331
             +R+ +++K +DS  +S
Sbjct: 344  DRRISLSIKAADSNASS 360



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 133/320 (41%), Gaps = 36/320 (11%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           ++VK G KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKLGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVT 120

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 523
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 524 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGGFIDV---GGVDGLVHIS 227

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            ++   +H      V+K G +   +++ +D++   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKIKVIGIDDDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 697 ETGRITLSLK--QSCCSSTD 714
              RI+LS+K   S  SS+D
Sbjct: 343 SDRRISLSIKAADSNASSSD 362


>gi|345888062|ref|ZP_08839186.1| 30S ribosomal protein S1 [Bilophila sp. 4_1_30]
 gi|345041152|gb|EGW45343.1| 30S ribosomal protein S1 [Bilophila sp. 4_1_30]
          Length = 570

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 99/195 (50%), Gaps = 25/195 (12%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1314
            I++G +KN+T  G FI +   +D  + +S++S    +  P + F +G  V  +VL+V+  
Sbjct: 378  ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELFKVGDTVQAKVLTVDQE 437

Query: 1315 SKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
            S++  + +K  T D  T      N  +   VG +V G I  +  +GLF+ +E   + GL 
Sbjct: 438  SEKFTLGIKQLTEDPWT------NVPTAYPVGGLVKGTITNITDFGLFVEVEE-GIEGLV 490

Query: 1373 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1432
            HVSELS   V     +Y+ GE+++ KI+ V  E RR+ L +K           Q+  EEE
Sbjct: 491  HVSELSNKKVKTPAELYKEGEEIQAKIIHVSAEDRRLGLSIK-----------QLKDEEE 539

Query: 1433 SDEAIEEVGSYNRSS 1447
              +  E    Y+RS 
Sbjct: 540  RKKPRE----YSRSG 550



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 11/176 (6%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  + ++ L+   +V G  KN+T  G F+ L   LD  + ++++S   +  P +   +G+
Sbjct: 193  KRQDLLQTLAEGQVVTGKAKNITEYGVFVDLG-GLDGLLHITDMSWKRIRHPREMVTLGQ 251

Query: 1303 LVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
             +  +VLS +  +++V + LK    D      +     S  +      G++  +  YG F
Sbjct: 252  DLELKVLSFDKDNQKVSLGLKQLVPDPWQDITARFPEASRHN------GKVTNLVDYGAF 305

Query: 1361 ITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            + +E   + GL H+SE+S    + +   + R G++V+V IL VD EK+RISLGMK 
Sbjct: 306  VELE-PGVEGLVHISEMSWTRKLRHPSQMVRQGDEVEVVILGVDPEKKRISLGMKQ 360



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 191/468 (40%), Gaps = 84/468 (17%)

Query: 101 SLETVQE--GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 158
            LE VQE  G++    ++ I+  GY +  G      FLP       S +D++P   +  +
Sbjct: 109 QLEDVQEKNGVIKGRIMRRIKG-GYTVDLG--GVEAFLP------GSHVDLRPVPDMDAL 159

Query: 159 VRS--------IDRTRKVVYLSS----DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 206
           V          I+R R  V +S     + +  SK   +DL    +  L  G +V+ + ++
Sbjct: 160 VNQEYEFRVLKINRRRSNVIVSRRVLLEEERDSK--RQDL----LQTLAEGQVVTGKAKN 213

Query: 207 ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA------RILFVDPTSR 260
           I E GV +       G   + H+ +     +WK   +  + V        ++L  D  ++
Sbjct: 214 ITEYGVFVDL----GGLDGLLHITDM----SWKRIRHPREMVTLGQDLELKVLSFDKDNQ 265

Query: 261 AVGLTL-----NPYL-LHNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 311
            V L L     +P+  +  R P +   + KV ++ D    V ++ G+             
Sbjct: 266 KVSLGLKQLVPDPWQDITARFPEASRHNGKVTNLVDYGAFVELEPGV------------- 312

Query: 312 PAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFT 367
              V IS+++   ++R   +  ++G  V V ILG    +    L    +K + +E     
Sbjct: 313 EGLVHISEMSWTRKLRHPSQMVRQGDEVEVVILGVDPEKKRISLGMKQIKPNPWE---LV 369

Query: 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAE 423
                 G +++G +  +  FG  +    G+  L    H+S+    K    P + FKVG  
Sbjct: 370 GEKYPEGTILEGVIKNITEFGMFIGIEDGIDGLI---HVSDISWTKKIRHPNELFKVGDT 426

Query: 424 LVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 481
           +  +VL V  +S++ T+  K+        + ++Y       +  G IT I   G FV   
Sbjct: 427 VQAKVLTVDQESEKFTLGIKQLTEDPWTNVPTAYPVGG---LVKGTITNITDFGLFVEVE 483

Query: 482 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
            G++G    SEL       P+ +Y  G+ ++ +I+      RR+ LS 
Sbjct: 484 EGIEGLVHVSELSNKKVKTPAELYKEGEEIQAKIIHVSAEDRRLGLSI 531


>gi|31789463|gb|AAP58577.1| putative 30S ribosomal protein S1 [uncultured Acidobacteria
            bacterium]
          Length = 318

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 94/160 (58%), Gaps = 6/160 (3%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            V G V+N+T  G FI +   +D  V +S++S    ++ P +    G+ +   + S++  +
Sbjct: 58   VHGRVRNLTDFGAFIEIEDGVDGLVHVSDISWSRRIKHPSEVLKKGQEIDAVITSIDAEN 117

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ +++K  +     +     L+    GD+V G+I R  ++G F+ +++ NL GLCH+S
Sbjct: 118  RRLSLSIKDLEPNAWDRF----LTEHKPGDVVRGKIARFANFGAFVELDD-NLEGLCHIS 172

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            ELS++ V+  E + + G++++ KIL++D E ++I L  +S
Sbjct: 173  ELSDERVEKPEDVVQLGQEMEFKILRIDVESKKIGLSARS 212



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 35/216 (16%)

Query: 243 NQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNR---APPSHVKVGDIYDQSKVVR 293
           N    V   +L VDP +R + L +     NP+  LH R       H +V ++ D    + 
Sbjct: 14  NPGDTVEVEVLSVDPKARRISLGMKQIQDNPWQTLHERYQVGTRVHGRVRNLTDFGAFIE 73

Query: 294 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE------KKYKEGSCVRVRILGFRH 347
           ++ G+  L             V +SD++    R+++      KK +E   V   I     
Sbjct: 74  IEDGVDGL-------------VHVSDISWS--RRIKHPSEVLKKGQEIDAVITSIDAENR 118

Query: 348 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 407
              L+   L+ +A++  +  H   KPG VV+GK+    +FGA V+    ++ LC +  +S
Sbjct: 119 RLSLSIKDLEPNAWDRFLTEH---KPGDVVRGKIARFANFGAFVELDDNLEGLCHISELS 175

Query: 408 EFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHK 441
           +  + KP    ++G E+ F++L   V+SK+I ++ +
Sbjct: 176 DERVEKPEDVVQLGQEMEFKILRIDVESKKIGLSAR 211



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 14/129 (10%)

Query: 1291 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH----VGDI 1346
            V+ P K    G  V   VLSV+P ++R+ + +K        Q + N    LH    VG  
Sbjct: 6    VKHPSKLVNPGDTVEVEVLSVDPKARRISLGMK--------QIQDNPWQTLHERYQVGTR 57

Query: 1347 VIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKE 1405
            V G+++ +  +G FI IE+  + GL HVS++S    + +   + + G+++   I  +D E
Sbjct: 58   VHGRVRNLTDFGAFIEIED-GVDGLVHVSDISWSRRIKHPSEVLKKGQEIDAVITSIDAE 116

Query: 1406 KRRISLGMK 1414
             RR+SL +K
Sbjct: 117  NRRLSLSIK 125



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 501 PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVTP 557
           PS + + G  V+  ++S  P +RRI+L        P +   +   ++G+ V G V  +T 
Sbjct: 9   PSKLVNPGDTVEVEVLSVDPKARRISLGMKQIQDNPWQTLHE-RYQVGTRVHGRVRNLTD 67

Query: 558 NAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFDQLLV-LDNESSN 611
               + +       G     H++D      ++H +    V+K G E D ++  +D E+  
Sbjct: 68  FGAFIEI-----EDGVDGLVHVSDISWSRRIKHPS---EVLKKGQEIDAVITSIDAENRR 119

Query: 612 LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671
           L LS K    N+  +     +   P  VV G +      G FV     L G    S+  D
Sbjct: 120 LSLSIKDLEPNAWDRF---LTEHKPGDVVRGKIARFANFGAFVELDDNLEGLCHISELSD 176

Query: 672 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
            +         +GQ +   IL ++ E+ +I LS +
Sbjct: 177 ERVEKPEDVVQLGQEMEFKILRIDVESKKIGLSAR 211



 Score = 42.0 bits (97), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAEL-- 424
           H   + G  V G+V  +  FGA ++   GV  L  +  +S    +K P +  K G E+  
Sbjct: 49  HERYQVGTRVHGRVRNLTDFGAFIEIEDGVDGLVHVSDISWSRRIKHPSEVLKKGQEIDA 108

Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
           V   +  +++R++++ K     +    L+ +       +  G I +    G FV   + +
Sbjct: 109 VITSIDAENRRLSLSIKDLEPNAWDRFLTEHKPGD---VVRGKIARFANFGAFVELDDNL 165

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           +G    SEL  +   +P  +  +GQ ++ +I+     S++I LS
Sbjct: 166 EGLCHISELSDERVEKPEDVVQLGQEMEFKILRIDVESKKIGLS 209


>gi|383753845|ref|YP_005432748.1| putative 30S ribosomal protein S1 [Selenomonas ruminantium subsp.
            lactilytica TAM6421]
 gi|381365897|dbj|BAL82725.1| putative 30S ribosomal protein S1 [Selenomonas ruminantium subsp.
            lactilytica TAM6421]
          Length = 354

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 38/290 (13%)

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
            +M+  +  G+ V   I++++ G  GLV  +   L G +  ++++   V D          
Sbjct: 102  DMEAIMERGETVQATINQVVKG--GLVASVN-GLRGFIPASQMELHFVKD---------- 148

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
              LS Y  GQ V+C+++EI    +    + LS R  L+ + +              K  E
Sbjct: 149  --LSVY-AGQTVECEIIEIDVHKQ---RLVLSRRKLLEAVRAE-------------KEDE 189

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
                L P+ IV+G VK +   G FI +   +D    +S+L+   V+ P     +G+ +  
Sbjct: 190  VFSTLQPDTIVRGTVKRIVDYGAFIDIG-GVDGLAHISDLAWNRVKHPSDVLEVGQELDV 248

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
             V S++  +KR+ +++K     T     ++N      GDI+ G+I ++  +G F+ IE  
Sbjct: 249  YVKSIDQEAKRISLSVKD----TMRDPWLDNAEKYAEGDIIEGKIIKLTDFGAFMEIE-P 303

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
               GL  + EL+E  ++  +     G++VKVK+L++D +++RISL +  +
Sbjct: 304  GFDGLIPMGELAEKRIERADEAVHVGDEVKVKVLRIDTKRKRISLSITKA 353



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S ++P  +V+G V  +  +GA +   GGV  L  +  ++   +  P    +VG EL   V
Sbjct: 192 STLQPDTIVRGTVKRIVDYGAFIDI-GGVDGLAHISDLAWNRVKHPSDVLEVGQELDVYV 250

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
             +  ++KRI+++ K T+    L     YAE     I  G I K+   G F+    G  G
Sbjct: 251 KSIDQEAKRISLSVKDTMRDPWLDNAEKYAEGD---IIEGKIIKLTDFGAFMEIEPGFDG 307

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             P  EL            HVG  VK +++      +RI+LS 
Sbjct: 308 LIPMGELAEKRIERADEAVHVGDEVKVKVLRIDTKRKRISLSI 350



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
            G+ V   ++ ++   +R+ ++ +       ++ E    S L    IV G +KR+  YG F
Sbjct: 154  GQTVECEIIEIDVHKQRLVLSRRKLLEAVRAEKEDEVFSTLQPDTIVRGTVKRIVDYGAF 213

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1420
            I I   +  GL H+S+L+ + V +   +   G+++ V +  +D+E +RISL +K +    
Sbjct: 214  IDIGGVD--GLAHISDLAWNRVKHPSDVLEVGQELDVYVKSIDQEAKRISLSVKDTMRDP 271

Query: 1421 DADNLQMSSE 1430
              DN +  +E
Sbjct: 272  WLDNAEKYAE 281



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 109/242 (45%), Gaps = 19/242 (7%)

Query: 475 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMK 532
           G  V   NG++GF P S++ L    +  S+Y  GQ V+C I+      +R+ LS   +++
Sbjct: 123 GGLVASVNGLRGFIPASQMELH-FVKDLSVY-AGQTVECEIIEIDVHKQRLVLSRRKLLE 180

Query: 533 PTRVSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 587
             R  ++D V    +  ++V G V  +      + +   G   G      LA + ++H +
Sbjct: 181 AVRAEKEDEVFSTLQPDTIVRGTVKRIVDYGAFIDI---GGVDGLAHISDLAWNRVKHPS 237

Query: 588 VMKSVIKPGYEFDQLL-VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 646
               V++ G E D  +  +D E+  + LS K ++ +       +A       ++ G +  
Sbjct: 238 ---DVLEVGQELDVYVKSIDQEAKRISLSVKDTMRDP---WLDNAEKYAEGDIIEGKIIK 291

Query: 647 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           + + G F+       G  P  +  + +     +  +VG  V+  +L ++++  RI+LS+ 
Sbjct: 292 LTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHVGDEVKVKVLRIDTKRKRISLSIT 351

Query: 707 QS 708
           ++
Sbjct: 352 KA 353


>gi|312139898|ref|YP_004007234.1| 30S ribosomal protein s1 rpsa [Rhodococcus equi 103S]
 gi|311889237|emb|CBH48551.1| 30S ribosomal protein S1 RpsA [Rhodococcus equi 103S]
          Length = 490

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVGVGDDALVKVIDIDLERRRISLSLKQA 365



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 797
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVGVGDDALV 346

Query: 798 AILDVAKAERLVDLSLK 814
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 47.0 bits (110), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 318 EGLVHISELAERHVEVPDQVVGVGDDALVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 375

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 376 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|323340744|ref|ZP_08080996.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
 gi|335996765|ref|ZP_08562682.1| 30S ribosomal protein S1 [Lactobacillus ruminis SPM0211]
 gi|417974259|ref|ZP_12615080.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
 gi|323091867|gb|EFZ34487.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
 gi|335351835|gb|EGM53326.1| 30S ribosomal protein S1 [Lactobacillus ruminis SPM0211]
 gi|346329256|gb|EGX97554.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
          Length = 395

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 95/171 (55%), Gaps = 6/171 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +V+G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +VL+V+P  
Sbjct: 199  VVEGKVARLTNFGAFIDLG-GVDGLVHVSEISFERVGKPSDVLKVGQDVKVKVLAVDPEK 257

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +++K    +T  Q   N    +  GD++ G +KR+ S+G F+ +    + GL H+S
Sbjct: 258  DRISLSIK----QTLPQPWDNITEKVAEGDVLEGTVKRLTSFGAFVEV-FPGVEGLVHIS 312

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            ++S  H+     +  +GEKVKVK+L V+ E+ R++L +K+   K  A+  Q
Sbjct: 313  QISHKHIATPNEVLASGEKVKVKVLNVNAEEHRLALSIKALQEKPAAEKKQ 363



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 6/112 (5%)

Query: 1307 RVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
            +++ +EP   R+ ++ K      R A++  +  L  L VGD+V G++ R+ ++G FI + 
Sbjct: 160  KIVELEPSENRLILSHKEIVQQEREANKKAV--LDKLVVGDVVEGKVARLTNFGAFIDLG 217

Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              +  GL HVSE+S + V     + + G+ VKVK+L VD EK RISL +K +
Sbjct: 218  GVD--GLVHVSEISFERVGKPSDVLKVGQDVKVKVLAVDPEKDRISLSIKQT 267



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 14/162 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G  +K  V  V   G +V    GV+   P   +S+   V+   ++K G EL  +++ ++ 
Sbjct: 111 GETIKAPVTQVVKGGLVVD--AGVRGFIPASMVSDH-FVEDLNQYK-GQELELKIVELEP 166

Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLIT----HGWITKIEKHGCFVRFYNGVQGF 487
              R+ ++HK+ + + + A   +     D+L+      G + ++   G F+    GV G 
Sbjct: 167 SENRLILSHKEIVQQEREA---NKKAVLDKLVVGDVVEGKVARLTNFGAFIDL-GGVDGL 222

Query: 488 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
              SE+  +   +PS +  VGQ VK ++++  P   RI+LS 
Sbjct: 223 VHVSEISFERVGKPSDVLKVGQDVKVKVLAVDPEKDRISLSI 264



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 153/351 (43%), Gaps = 33/351 (9%)

Query: 371 VKPGMVVKGKVIAVDSFG-AIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           V+ G VVKG+++A D     IV   G GV+ + P   ++    V  G  +KVG EL   V
Sbjct: 19  VEVGDVVKGEILAFDDQKQVIVGIEGTGVEGVVPARELTSG--VDEGA-YKVGDELDLVV 75

Query: 429 LG-VKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
           +  + S +      ++ ++   +     +    EA + +     +T++ K G  V    G
Sbjct: 76  ISKIGSDKEGGSFLLSQRRLAARKVWDDIEKKFEAGETI--KAPVTQVVKGGLVVD--AG 131

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSE--- 538
           V+GF P S +  D   E  + Y  GQ ++ +I+   P+  R+ LS   +++  R +    
Sbjct: 132 VRGFIPASMVS-DHFVEDLNQYK-GQELELKIVELEPSENRLILSHKEIVQQEREANKKA 189

Query: 539 --DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 596
             D LV +G +V G V  +T     + +   G   G +    ++   E       V+K G
Sbjct: 190 VLDKLV-VGDVVEGKVARLTNFGAFIDL---GGVDGLVHVSEIS--FERVGKPSDVLKVG 243

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
            +   ++L +D E   + LS K +L    Q   +    +    V+ G V  +   G FV 
Sbjct: 244 QDVKVKVLAVDPEKDRISLSIKQTL---PQPWDNITEKVAEGDVLEGTVKRLTSFGAFVE 300

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
               + G    S+      A  ++    G+ V+  +L+VN+E  R+ LS+K
Sbjct: 301 VFPGVEGLVHISQISHKHIATPNEVLASGEKVKVKVLNVNAEEHRLALSIK 351


>gi|347534431|ref|YP_004841101.1| 30S ribosomal protein S1 [Lactobacillus sanfranciscensis TMW 1.1304]
 gi|345504487|gb|AEN99169.1| 40S ribosomal protein S1 [Lactobacillus sanfranciscensis TMW 1.1304]
          Length = 405

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 89/160 (55%), Gaps = 6/160 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            IV+G V  +T+ G F+ L   +D  V +S +S  +V  P     +G+ V  +VL++EP  
Sbjct: 204  IVEGKVARLTNFGAFVDLG-GIDGLVHVSEISYDHVSKPSDILKVGEDVKVKVLAIEPER 262

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +++K          E        VG I+ G +KR+  +G F+ +    + GL H+S
Sbjct: 263  NRISLSIKQLQPGPWDDIE----EKAAVGSILDGTVKRLVDFGAFVEVL-PGVEGLVHIS 317

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            ++S  H+D    + ++GEK++VK+L +D E+ R++L MK+
Sbjct: 318  QISHKHIDKPSDVLKSGEKIQVKVLSIDPEEHRLALSMKA 357



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +++ V P   R+ ++ +    +   ++    + +L VGDIV G++ R+ ++G F+ +   
Sbjct: 165  KIIEVVPEDNRLILSHRAVAEKDRKEAREKIMGSLKVGDIVEGKVARLTNFGAFVDLGGI 224

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            +  GL HVSE+S DHV     I + GE VKVK+L ++ E+ RISL +K
Sbjct: 225  D--GLVHVSEISYDHVSKPSDILKVGEDVKVKVLAIEPERNRISLSIK 270



 Score = 48.1 bits (113), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 110/245 (44%), Gaps = 31/245 (12%)

Query: 388 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 445
           G +V    GV+   P   +++   V    ++K GAEL  +++ V  +  R+ ++H+    
Sbjct: 128 GGLVVNADGVRGFIPASMITDH-FVSDLNQYK-GAELEVKIIEVVPEDNRLILSHRAVAE 185

Query: 446 KSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 497
           K +        EA +++        I  G + ++   G FV    G+ G    SE+  D 
Sbjct: 186 KDR-------KEAREKIMGSLKVGDIVEGKVARLTNFGAFVDL-GGIDGLVHVSEISYDH 237

Query: 498 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLGSLVSGVVDVV 555
             +PS +  VG+ VK ++++  P   RI+LS   ++P    + ++   +GS++ G V  +
Sbjct: 238 VSKPSDILKVGEDVKVKVLAIEPERNRISLSIKQLQPGPWDDIEEKAAVGSILDGTVKRL 297

Query: 556 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPGYEFD-QLLVLDNESSNL 612
                 V V+      G     H++  + H  + K   V+K G +   ++L +D E   L
Sbjct: 298 VDFGAFVEVLP-----GVEGLVHIS-QISHKHIDKPSDVLKSGEKIQVKVLSIDPEEHRL 351

Query: 613 LLSAK 617
            LS K
Sbjct: 352 ALSMK 356



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 150/383 (39%), Gaps = 61/383 (15%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 538
           GV+G  P  E+       P+  Y VG  VK  ++S I   +    S+++   R+      
Sbjct: 47  GVEGVIPSKEVSATMESNPTDKYKVGDTVKVVVVSKIGDDKE-GGSYLLSIRRLEALKVW 105

Query: 539 DDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
           D++ +       + V V  P    + V A G  +G IP   + DH     V       G 
Sbjct: 106 DEIKEKADKGENITVKVTRPVRGGLVVNADGV-RGFIPASMITDHF----VSDLNQYKGA 160

Query: 598 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVR 655
           E + +++ +  E + L+LS +       ++        +    +V G V  +   G FV 
Sbjct: 161 ELEVKIIEVVPEDNRLILSHRAVAEKDRKEAREKIMGSLKVGDIVEGKVARLTNFGAFVD 220

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
            LG + G    S+      +  S    VG+ V+  +L +  E  RI+LS+KQ      D 
Sbjct: 221 -LGGIDGLVHVSEISYDHVSKPSDILKVGEDVKVKVLAIEPERNRISLSIKQLQPGPWDD 279

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
                   +EEK A                   +GS+++G V    DFG  V  E    V
Sbjct: 280 --------IEEKAA-------------------VGSILDGTVKRLVDFGAFV--EVLPGV 310

Query: 776 YGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            G +   Q++   ++       SG  IQ  +L +   E  + LS+K +            
Sbjct: 311 EGLVHISQISHKHIDKPSDVLKSGEKIQVKVLSIDPEEHRLALSMKAL-----------E 359

Query: 829 QAQKKKRKREASKDLGVHQTVNA 851
           +A K++ K+   K++  + T NA
Sbjct: 360 EAPKEENKKAPKKNVDDNSTSNA 382


>gi|302787028|ref|XP_002975284.1| hypothetical protein SELMODRAFT_415445 [Selaginella moellendorffii]
 gi|300156858|gb|EFJ23485.1| hypothetical protein SELMODRAFT_415445 [Selaginella moellendorffii]
          Length = 180

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 63/96 (65%), Gaps = 5/96 (5%)

Query: 1327 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV----GLCHVSELSEDHV 1382
            + T SQ + N       G+IV G I  +E++G+FI++  +N+      LCHVSE+S D +
Sbjct: 4    AATTSQ-DSNGWKKFGAGEIVSGCIHNIEAFGIFISLAKSNVSVLQGCLCHVSEVSYDFI 62

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
             ++ T+ + G+ V+VKILKVD E +RISLGMK+SY 
Sbjct: 63   QDLSTLCKVGQWVQVKILKVDAETKRISLGMKASYL 98



 Score = 40.8 bits (94), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 25/30 (83%), Gaps = 1/30 (3%)

Query: 1533 AAEERLLEKD-APRTPDEFERLVRSSPNSS 1561
            AA+E+LL+KD  P T D+FERLV +SPNSS
Sbjct: 149  AAKEQLLQKDQPPETKDDFERLVAASPNSS 178


>gi|289550745|ref|YP_003471649.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis HKU09-01]
 gi|315658241|ref|ZP_07911113.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590]
 gi|385784373|ref|YP_005760546.1| putative 30S ribosomal protein S1 [Staphylococcus lugdunensis
            N920143]
 gi|418414047|ref|ZP_12987263.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis ACS-027-V-Sch2]
 gi|289180277|gb|ADC87522.1| SSU ribosomal protein S1p [Staphylococcus lugdunensis HKU09-01]
 gi|315496570|gb|EFU84893.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590]
 gi|339894629|emb|CCB53913.1| putative 30S ribosomal protein S1 [Staphylococcus lugdunensis
            N920143]
 gi|410877685|gb|EKS25577.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis ACS-027-V-Sch2]
          Length = 392

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 30/197 (15%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            ++ L+   +++G V  +T+ G FI +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 188  LDSLNAGDVIKGKVARLTNFGAFIDIG-GVDGLVHVSELSHEHVDSPEDVVSVGQEVEVK 246

Query: 1308 VLSVEPLSKRVEV----TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
            V SVE  S+R+ +    TL T   R   Q         H GD++ G + R+ ++G F+ +
Sbjct: 247  VKSVEKDSERISLSIKDTLPTPFERIKGQ--------FHEGDVIEGTVVRLAAFGAFVEV 298

Query: 1364 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS-------- 1415
                + GL H+SE+   H+ +       G++V VKIL VD++  RISL +K+        
Sbjct: 299  A-PGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVDEDNERISLSIKATLPNEDVI 357

Query: 1416 --------SYFKNDADN 1424
                    SY  ND+D+
Sbjct: 358  ESDEATTQSYIDNDSDD 374



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 94/170 (55%), Gaps = 10/170 (5%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
            E L+ + +++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLNNDEVIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIKI 156

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +V  +EP   RV ++ K  +       + + L +L+ GD++ G++ R+ ++G FI I   
Sbjct: 157  KVEELEPEKNRVILSRKAVEQAENEVKKASLLDSLNAGDVIKGKVARLTNFGAFIDIGGV 216

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  GL HVSELS +HVD+ E +   G++V+VK+  V+K+  RISL +K +
Sbjct: 217  D--GLVHVSELSHEHVDSPEDVVSVGQEVEVKVKSVEKDSERISLSIKDT 264



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 24/260 (9%)

Query: 288 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 341
           ++KV  V +G GL++D+      P++ +ST  ++    V + +  K++ +  E    RV 
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTD-FIEDFSVFDGQTIKIKVEELEPEKNRV- 168

Query: 342 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 401
           IL  + +E     + KAS  + L         G V+KGKV  + +FGA +   GGV  L 
Sbjct: 169 ILSRKAVEQAENEVKKASLLDSL-------NAGDVIKGKVARLTNFGAFIDI-GGVDGLV 220

Query: 402 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT 459
            +  +S   +  P     VG E+  +V  V+  S+RI+++ K TL      I   + E  
Sbjct: 221 HVSELSHEHVDSPEDVVSVGQEVEVKVKSVEKDSERISLSIKDTLPTPFERIKGQFHEGD 280

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
              +  G + ++   G FV    GVQG    SE+       PS     GQ V  +I+   
Sbjct: 281 ---VIEGTVVRLAAFGAFVEVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVD 337

Query: 520 PASRRINLSFMMKPTRVSED 539
             + RI+LS  +K T  +ED
Sbjct: 338 EDNERISLS--IKATLPNED 355



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +D+K G  + G+V  V+    +V   GG    + P+  +S   I  P +   VG  +   
Sbjct: 11  NDIKEGDKITGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIDNPNEVVSVGDSIEAY 70

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEVDEENESGAYILSKRQLETEKSYEYLQEKLNNDEVIEAKVTEVVKGGLVVDV--G 128

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
            +GF P S +  D   E  S++  GQ +K ++    P   R+ LS   K    +E+++ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIKIKVEELEPEKNRVILS--RKAVEQAENEVKK 184

Query: 544 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASLLDSLNAGDVIKGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVDSPEDVVSV 239

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
           G E + ++  ++ +S  + LS K +L    +++       H   V+ G V  +   G FV
Sbjct: 240 GQEVEVKVKSVEKDSERISLSIKDTLPTPFERI---KGQFHEGDVIEGTVVRLAAFGAFV 296

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
                + G    S+         S+    GQ V   IL V+ +  RI+LS+K + 
Sbjct: 297 EVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVDEDNERISLSIKATL 351



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
           G V++G V+ + +FGA V+   GV+ L  +  +    I  P +K + G ++  ++LGV  
Sbjct: 279 GDVIEGTVVRLAAFGAFVEVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVDE 338

Query: 432 KSKRITVTHKKTL-----VKSKLAILSSY 455
            ++RI+++ K TL     ++S  A   SY
Sbjct: 339 DNERISLSIKATLPNEDVIESDEATTQSY 367


>gi|386394604|ref|ZP_10079385.1| ribosomal protein S1 [Desulfovibrio sp. U5L]
 gi|385735482|gb|EIG55680.1| ribosomal protein S1 [Desulfovibrio sp. U5L]
          Length = 576

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 150/348 (43%), Gaps = 34/348 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G  V G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQTVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQ 266

Query: 434 --KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +++++  K+ +      I   Y E T RL   G +T +  +G FV    GV+G    S
Sbjct: 267 DKQKVSLGMKQLVADPWENIAGKYPEGT-RL--SGKVTNLVDYGAFVELEAGVEGLVHIS 323

Query: 492 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 546
           E+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V      G+
Sbjct: 324 EMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLG--MKQVRPNPWDIVAEKYPEGT 381

Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 600
           ++ G V  +T   + +     G   G     H++D     +  K V  PG  F       
Sbjct: 382 VLEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKSGDTVM 432

Query: 601 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 658
            ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGAMVKGTVTNITDFGLFVEVEE 488

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
            + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 489 GIEGLVHVSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 8/162 (4%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1314
            +++G VKN+T  G FI +   +D  + +S++S    V  P + F  G  V  +VL+V+  
Sbjct: 382  VLEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDTVMAKVLTVDKE 441

Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
            +++  + +K       S+     + + + VG +V G +  +  +GLF+ +E   + GL H
Sbjct: 442  NEKFTLGIKQ-----LSEDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEE-GIEGLVH 495

Query: 1374 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            VSE+S   V     +Y+ G++++ K++ V  ++RR+ L +KS
Sbjct: 496  VSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIKS 537



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 7/165 (4%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L     V G VKN+T  G F+ L   LD  + ++++S   ++ P++   +G  +  +VLS
Sbjct: 205  LEEGQTVTGRVKNITEYGVFVDLG-GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
             +   ++V + +K    +  +    N       G  + G++  +  YG F+ +E   + G
Sbjct: 264  FDQDKQKVSLGMK----QLVADPWENIAGKYPEGTRLSGKVTNLVDYGAFVELE-AGVEG 318

Query: 1371 LCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            L H+SE+S    + +   +   G++V+V +L VD +K+RISLGMK
Sbjct: 319  LVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMK 363



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 6/123 (4%)

Query: 1294 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQI 1351
            P+ +  +G+    RVL +      V V+ +    + R + + ++  L  L  G  V G++
Sbjct: 158  PDMDALVGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL--LKTLEEGQTVTGRV 215

Query: 1352 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
            K +  YG+F+ +    L GL H++++S   + + + +   G+++++K+L  D++K+++SL
Sbjct: 216  KNITEYGVFVDL--GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSL 273

Query: 1412 GMK 1414
            GMK
Sbjct: 274  GMK 276



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 152/391 (38%), Gaps = 83/391 (21%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--- 516
           D +IT   + +I+  G +     GV+ F P S + L P  +  ++  VGQ  + R++   
Sbjct: 121 DDVITGRIVRRIK--GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKIN 176

Query: 517 ---SSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV-------- 562
              S++  SRR+ L       R    DL+K    G  V+G V  +T   V V        
Sbjct: 177 RRRSNVIVSRRVLLEERRDSMR---KDLLKTLEEGQTVTGRVKNITEYGVFVDLGGLDGL 233

Query: 563 -YVIAKGYSKGTIPTE--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 619
            ++    + +   P E  HL D LE                ++L  D +   + L  K  
Sbjct: 234 MHITDMSWKRIKHPKELVHLGDELEL---------------KVLSFDQDKQKVSLGMKQL 278

Query: 620 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLS 678
           + +  + +   A      + + G V N+++ G FV     + G    S+    ++    S
Sbjct: 279 VADPWENI---AGKYPEGTRLSGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPS 335

Query: 679 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 738
           +  +VG  V   +L V+ +  RI+L +KQ   +  D        ++ EK           
Sbjct: 336 QMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWD--------IVAEK----------- 376

Query: 739 SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVE 790
                   +  G+V+EG V    +FG+ +  E+  D  G I    ++        G   +
Sbjct: 377 --------YPEGTVLEGSVKNITEFGIFIGIEDGID--GLIHVSDISWTKKVRHPGEMFK 426

Query: 791 SGSVIQAAILDVAKAERLVDLSLKTVFIDRF 821
           SG  + A +L V K      L +K +  D +
Sbjct: 427 SGDTVMAKVLTVDKENEKFTLGIKQLSEDPW 457



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 166/384 (43%), Gaps = 35/384 (9%)

Query: 64  VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG  +T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQTVTGRVKNITEYG 222

Query: 123 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV 178
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLG-----M 275

Query: 179 SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 238
            + V    + I+      G  +S +V ++++ G  +       G V I  +  T    + 
Sbjct: 276 KQLVADPWENIA-GKYPEGTRLSGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHP 334

Query: 239 KNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIYDQSKVV 292
               +   +V   +L VDP  + + L +     NP+ ++  + P   V  G + + ++  
Sbjct: 335 SQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTVLEGSVKNITE-- 392

Query: 293 RVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF-RHLEG 350
                 G+ + I          + +SD++  ++VR   + +K G  V  ++L   +  E 
Sbjct: 393 -----FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKSGDTVMAKVLTVDKENEK 444

Query: 351 LATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
              GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +  +S  
Sbjct: 445 FTLGIKQLS--EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRK 502

Query: 410 EIVKPGKKFKVGAELVFRVLGVKS 433
           ++  P + +K G E+  +V+ V +
Sbjct: 503 KVKTPAELYKEGDEIEAKVIHVSA 526



 Score = 47.4 bits (111), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 86/451 (19%), Positives = 175/451 (38%), Gaps = 80/451 (17%)

Query: 563 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 622
           Y +  G  +  +P  H+   L     M +++   +EF ++L ++   SN+++S +  L  
Sbjct: 136 YTVDLGGVEAFLPGSHV--DLRPVPDMDALVGQEFEF-RVLKINRRRSNVIVSRRVLLEE 192

Query: 623 SAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 681
               +  D    +     V G V NI E G FV  LG L G    +     +     +  
Sbjct: 193 RRDSMRKDLLKTLEEGQTVTGRVKNITEYGVFVD-LGGLDGLMHITDMSWKRIKHPKELV 251

Query: 682 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 741
           ++G  +   +L  + +  +++L +KQ                  E IA            
Sbjct: 252 HLGDELELKVLSFDQDKQKVSLGMKQLVADPW------------ENIAG----------- 288

Query: 742 KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGS 793
           K+ EG    + + GKV    D+G  V  E  + V G +   +++           V  G 
Sbjct: 289 KYPEG----TRLSGKVTNLVDYGAFVELE--AGVEGLVHISEMSWTRKLRHPSQMVHVGD 342

Query: 794 VIQAAILDVAKAERLVDLSLKTV-------FIDRFREANSNRQAQKKKRKREASKDLGVH 846
            ++  +L V   ++ + L +K V         +++ E      + K     E    +G+ 
Sbjct: 343 EVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTVLEGSVKNIT--EFGIFIGIE 400

Query: 847 QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSS 906
             ++ ++ +                   + +S     + P + F +G +V+A V+ +   
Sbjct: 401 DGIDGLIHV-------------------SDISWTKKVRHPGEMFKSGDTVMAKVLTVDKE 441

Query: 907 STAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 966
           +   +  L +K +SE   +     +   +Y VG++V+  +T I    L ++   G  G +
Sbjct: 442 NE--KFTLGIKQLSEDPWT-----RVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLV 494

Query: 967 HITEVNDDKSNVVENLFSNFKIGQTVTARII 997
           H++E++  K      L   +K G  + A++I
Sbjct: 495 HVSEISRKKVKTPAEL---YKEGDEIEAKVI 522


>gi|357398732|ref|YP_004910657.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
            46488]
 gi|386354772|ref|YP_006053018.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
            46488]
 gi|337765141|emb|CCB73850.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
            46488]
 gi|365805280|gb|AEW93496.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
            46488]
          Length = 498

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 187/416 (44%), Gaps = 66/416 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 375



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|377567693|ref|ZP_09796900.1| 30S ribosomal protein S1 [Gordonia terrae NBRC 100016]
 gi|377535091|dbj|GAB42065.1| 30S ribosomal protein S1 [Gordonia terrae NBRC 100016]
          Length = 491

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IG+   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  V-DEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 160/410 (39%), Gaps = 50/410 (12%)

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           + S ++ V    T      AI S+     D  I  G I K+++    +      +G  P 
Sbjct: 6   ITSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPS 65

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSL 547
            EL +    +P+ + +VG  V+  +++      R+ LS      +    + ++L +    
Sbjct: 66  RELSIKHDVDPNEVVNVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEA 125

Query: 548 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 606
           V G V  V    +++ +  +G+   ++        +E   V       G E + +++ LD
Sbjct: 126 VKGTVIEVVKGGLILDIGLRGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELD 177

Query: 607 NESSNLLLSAKYSLINSAQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 665
              +N++LS +  L  +  ++ S+  H +    V  G V +I+  G FV  LG + G   
Sbjct: 178 KNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVH 236

Query: 666 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 725
            S+         S+   VG  V   +LDV+ +  R++LSLK +        F + H    
Sbjct: 237 VSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH---- 291

Query: 726 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 785
                                  IG ++ GKV +   FG  V  +E   + G +   +LA
Sbjct: 292 ----------------------AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELA 327

Query: 786 GATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 828
              VE        G      ++D+    R + LSLK    D   E + ++
Sbjct: 328 ERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407


>gi|385812293|ref|YP_005848684.1| 30S ribosomal protein S1 [Lactobacillus fermentum CECT 5716]
 gi|299783190|gb|ADJ41188.1| 30S ribosomal protein S1 [Lactobacillus fermentum CECT 5716]
          Length = 410

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 91/160 (56%), Gaps = 6/160 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +V+G V  +T+ G FI L   +D  V +S +S  +V+ P     +G+ V  +VL+V+P  
Sbjct: 203  VVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPER 261

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ +++K +        E        VG ++ G +KR+ S+G F+ +    + GL H+S
Sbjct: 262  ERISLSIKQTLPGPWDDIE----EKAAVGTVLTGTVKRLTSFGAFVEV-FPGVEGLVHIS 316

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            ++S  H+     +  AG++VKVK+L VD E++R+ L +K+
Sbjct: 317  QISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKA 356



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 1284 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1343
            S ++D YVE    +F  G+ +  +++ +EP   R+ ++ K        ++     S L  
Sbjct: 143  SMITDHYVEDL-NQFK-GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELVA 200

Query: 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1403
            GD+V G++ R+ ++G FI +   +  GL HVSE+S DHVD    +   G++VKVK+L VD
Sbjct: 201  GDVVEGKVARMTNFGAFIDLGGVD--GLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVD 258

Query: 1404 KEKRRISLGMKSS 1416
             E+ RISL +K +
Sbjct: 259  PERERISLSIKQT 271



 Score = 68.6 bits (166), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
           I++A   E      S++  G VV+GKV  + +FGA +   GGV  L  +  +S   + KP
Sbjct: 182 IVQAQHEEAAKKIFSELVAGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKP 240

Query: 415 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
               +VG E+  +VL V  + +RI+++ K+TL      I    A  T   +  G + ++ 
Sbjct: 241 ADVLEVGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAAVGT---VLTGTVKRLT 297

Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             G FV  + GV+G    S++       P+ +   GQ VK ++++  P  +R+ LS 
Sbjct: 298 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSI 354



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 140/355 (39%), Gaps = 63/355 (17%)

Query: 482 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 538
           +GV+G  P ++L   P    + +  VG  +   ++S I  S + N S+++   R+     
Sbjct: 46  SGVEGVVPANQLSTKPVDNINDVVKVGDELDLVVISKI-GSDKENGSYLLSHRRLEAMKV 104

Query: 539 --------DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 590
                   DD    G  ++  V       +VV    +G+   ++ T+H  + L       
Sbjct: 105 WNEIQKKFDD----GETITATVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK--- 157

Query: 591 SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNII 648
                G E +  ++    S N L+ +   ++ +  +  +    S +    VV G V  + 
Sbjct: 158 -----GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELVAGDVVEGKVARMT 212

Query: 649 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
             G F+  LG + G    S+         +    VGQ V+  +L+V+ E  RI+LS+KQ+
Sbjct: 213 NFGAFID-LGGVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPERERISLSIKQT 271

Query: 709 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 768
                D         +EEK A                   +G+V+ G V     FG  V 
Sbjct: 272 LPGPWDD--------IEEKAA-------------------VGTVLTGTVKRLTSFGAFV- 303

Query: 769 FEEHSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 816
            E    V G      I+H  +A     +E+G  ++  +L+V    + + LS+K +
Sbjct: 304 -EVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKAL 357



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 34/197 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD+V G+++++ +   G  + +G  + G VH +E+           YD     P    + 
Sbjct: 201  GDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEIS----------YDHVD-KPADVLEV 246

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KVL +         + LS++ +L G               P   +E  E  +  
Sbjct: 247  GQEVKVKVLNVDPERE---RISLSIKQTLPG---------------PWDDIE--EKAAVG 286

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+V+P 
Sbjct: 287  TVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPE 346

Query: 1315 SKRVEVTLKTSDSRTAS 1331
             +R+ +++K  +   A 
Sbjct: 347  RQRLGLSIKALEEAPAG 363


>gi|429761209|ref|ZP_19293640.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes
            hadrus DSM 3319]
 gi|429184350|gb|EKY25370.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes
            hadrus DSM 3319]
          Length = 632

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 96/173 (55%), Gaps = 8/173 (4%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  E  E +   M V+G VKNVT  G FI L    D  + +S +S G VE+P+K F IG 
Sbjct: 458  KQKELFEKIEAGMKVEGVVKNVTDFGAFIDLG-GADGLLHISEMSWGRVENPKKVFNIGD 516

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             V   VL  +   +++ ++LK  +     ++E        VG +V G++ R+  +G F+ 
Sbjct: 517  KVT--VLIKDIQGEKIALSLKFPEENPWLKAE----EKYKVGSVVTGKVARMTDFGAFVE 570

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            +E + +  L HVS+++++H+D    +   G++++ K++   K+ ++ISL MK+
Sbjct: 571  LE-SGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSMKA 622



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 16/240 (6%)

Query: 294 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE 349
           +D GL +L  I    V  PA + +SD  E +++K E     G  +   I  F    R + 
Sbjct: 393 LDGGLSVL--IEEARVFIPASL-VSDSYERDLKKYE-----GQEIEFVISEFNPRKRRVI 444

Query: 350 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
           G    +L A+  E        ++ GM V+G V  V  FGA +   GG   L  +  MS  
Sbjct: 445 GDRKQLLVAAKKEKQKELFEKIEAGMKVEGVVKNVTDFGAFIDL-GGADGLLHISEMSWG 503

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
            +  P K F +G ++   +  ++ ++I ++ K       L     Y   +   +  G + 
Sbjct: 504 RVENPKKVFNIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAEEKYKVGS---VVTGKVA 560

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++   G FV   +G+      S++  +   +PS +  VGQ ++ +++      ++I+LS 
Sbjct: 561 RMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSM 620



 Score = 43.9 bits (102), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 35/182 (19%)

Query: 640 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
           V G V N+ + G F+  LG   G    S+   G+  +  K + +G  V   I D+  E  
Sbjct: 472 VEGVVKNVTDFGAFID-LGGADGLLHISEMSWGRVENPKKVFNIGDKVTVLIKDIQGE-- 528

Query: 700 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 759
           +I LSLK          F +E+                   LK  E + +GSV+ GKV  
Sbjct: 529 KIALSLK----------FPEEN-----------------PWLKAEEKYKVGSVVTGKVAR 561

Query: 760 SNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
             DFG  V  E   D    ++     H       +  G  I+A ++D  K ++ + LS+K
Sbjct: 562 MTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSMK 621

Query: 815 TV 816
            +
Sbjct: 622 AL 623


>gi|421074415|ref|ZP_15535447.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
            fermentans JBW45]
 gi|392527456|gb|EIW50550.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
            fermentans JBW45]
          Length = 655

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 101/184 (54%), Gaps = 8/184 (4%)

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E    L+   IV G V+ +   G FI +   +D  V +S+LS   V+SP++   +G  V 
Sbjct: 456  ETFSKLAVGQIVSGTVRRIVDFGAFIDIG-GIDGLVHISDLSWHRVKSPQEIVALGDQVK 514

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
              +L ++  +K++ ++LK           ++ +    VG IV G++ ++  +G FI +  
Sbjct: 515  VLILKIDNEAKKISLSLK----EVGRDPWLDLIEQYSVGAIVKGKVTKITKFGAFIEL-V 569

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1425
              + GL H+SELS++ V+ +E +   G++V VKIL++ KE +RISL +  S  + DA+ +
Sbjct: 570  PGIEGLVHMSELSDERVNKVEDVVAVGQEVTVKILEISKENKRISLSI--SKAQQDAERV 627

Query: 1426 QMSS 1429
            +  S
Sbjct: 628  EYQS 631



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           T S +  G +V G V  +  FGA +   GG+  L  +  +S   +  P +   +G ++  
Sbjct: 457 TFSKLAVGQIVSGTVRRIVDFGAFIDI-GGIDGLVHISDLSWHRVKSPQEIVALGDQVKV 515

Query: 427 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
            +L +  ++K+I+++ K+      L ++  Y+      I  G +TKI K G F+    G+
Sbjct: 516 LILKIDNEAKKISLSLKEVGRDPWLDLIEQYSVGA---IVKGKVTKITKFGAFIELVPGI 572

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           +G    SEL  +   +   +  VGQ V  +I+     ++RI+LS 
Sbjct: 573 EGLVHMSELSDERVNKVEDVVAVGQEVTVKILEISKENKRISLSI 617



 Score = 47.4 bits (111), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 116/259 (44%), Gaps = 36/259 (13%)

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-----GSVIQAAILDVAKAER 807
            +E KV E  + G+ VS      ++GF+   Q+    VE      G  +    ++V + ++
Sbjct: 380  VEAKVLEVVNGGLKVSV---LGIHGFVPASQVELRFVEDLSPFKGQTLTFQPIEVDRIKK 436

Query: 808  LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 867
             V LS K +            Q Q++  + E    L V Q V+  V  + +    + +  
Sbjct: 437  RVILSRKVIL-----------QEQRRILEEETFSKLAVGQIVSGTVRRIVDFGAFIDIGG 485

Query: 868  YNHSIGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 925
             +   G   +SD  ++  K PQ+    G  V   V+ L   + A ++ L LK     E  
Sbjct: 486  ID---GLVHISDLSWHRVKSPQEIVALGDQV--KVLILKIDNEAKKISLSLK-----EVG 535

Query: 926  SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 985
                      Y VG++V+ ++T+I      ++   G  G +H++E++D++ N VE++ + 
Sbjct: 536  RDPWLDLIEQYSVGAIVKGKVTKITKFGAFIELVPGIEGLVHMSELSDERVNKVEDVVA- 594

Query: 986  FKIGQTVTARI--IAKSNK 1002
              +GQ VT +I  I+K NK
Sbjct: 595  --VGQEVTVKILEISKENK 611



 Score = 41.6 bits (96), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSED 539
           G+ GF P S++ L    E  S +  GQ +  + +      +R+ LS    + +  R+ E+
Sbjct: 398 GIHGFVPASQVELRF-VEDLSPFK-GQTLTFQPIEVDRIKKRVILSRKVILQEQRRILEE 455

Query: 540 DL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 596
           +    + +G +VSG V  +      + +   G   G +    L+ H       + ++  G
Sbjct: 456 ETFSKLAVGQIVSGTVRRIVDFGAFIDI---GGIDGLVHISDLSWH--RVKSPQEIVALG 510

Query: 597 YEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
            +   L++ +DNE+  + LS K    +    L    S     ++V G V  I + G F+ 
Sbjct: 511 DQVKVLILKIDNEAKKISLSLKEVGRDPWLDLIEQYS---VGAIVKGKVTKITKFGAFIE 567

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            +  + G    S+  D +   +     VGQ V   IL+++ E  RI+LS+ ++
Sbjct: 568 LVPGIEGLVHMSELSDERVNKVEDVVAVGQEVTVKILEISKENKRISLSISKA 620


>gi|167766699|ref|ZP_02438752.1| hypothetical protein CLOSS21_01205 [Clostridium sp. SS2/1]
 gi|167711636|gb|EDS22215.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
            SS2/1]
 gi|291558359|emb|CBL37159.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
            DMAPP forming) [butyrate-producing bacterium SSC/2]
          Length = 632

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 96/173 (55%), Gaps = 8/173 (4%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  E  E +   M V+G VKNVT  G FI L    D  + +S +S G VE+P+K F IG 
Sbjct: 458  KQKELFEKIEAGMKVEGVVKNVTDFGAFIDLG-GADGLLHISEMSWGRVENPKKVFNIGD 516

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             V   VL  +   +++ ++LK  +     ++E        VG +V G++ R+  +G F+ 
Sbjct: 517  KVT--VLIKDIQGEKIALSLKFPEENPWLKAE----EKYKVGSVVTGKVARMTDFGAFVE 570

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            +E + +  L HVS+++++H+D    +   G++++ K++   K+ ++ISL MK+
Sbjct: 571  LE-SGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSMKA 622



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 16/240 (6%)

Query: 294 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE 349
           +D GL +L  I    V  PA + +SD  E +++K E     G  +   I  F    R + 
Sbjct: 393 LDGGLSVL--IEEARVFIPASL-VSDSYERDLKKYE-----GQEIEFVISEFNPRKRRVI 444

Query: 350 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
           G    +L A+  E        ++ GM V+G V  V  FGA +   GG   L  +  MS  
Sbjct: 445 GDRKQLLVAAKKEKQKELFEKIEAGMKVEGVVKNVTDFGAFIDL-GGADGLLHISEMSWG 503

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
            +  P K F +G ++   +  ++ ++I ++ K       L     Y   +   +  G + 
Sbjct: 504 RVENPKKVFNIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAEEKYKVGS---VVTGKVA 560

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++   G FV   +G+      S++  +   +PS +  VGQ ++ +++      ++I+LS 
Sbjct: 561 RMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSM 620



 Score = 43.9 bits (102), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 35/182 (19%)

Query: 640 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
           V G V N+ + G F+  LG   G    S+   G+  +  K + +G  V   I D+  E  
Sbjct: 472 VEGVVKNVTDFGAFID-LGGADGLLHISEMSWGRVENPKKVFNIGDKVTVLIKDIQGE-- 528

Query: 700 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 759
           +I LSLK          F +E+                   LK  E + +GSV+ GKV  
Sbjct: 529 KIALSLK----------FPEEN-----------------PWLKAEEKYKVGSVVTGKVAR 561

Query: 760 SNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
             DFG  V  E   D    ++     H       +  G  I+A ++D  K ++ + LS+K
Sbjct: 562 MTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSMK 621

Query: 815 TV 816
            +
Sbjct: 622 AL 623


>gi|70726436|ref|YP_253350.1| 30S ribosomal protein S1 [Staphylococcus haemolyticus JCSC1435]
 gi|84029458|sp|Q4L6I1.1|RS1_STAHJ RecName: Full=30S ribosomal protein S1
 gi|68447160|dbj|BAE04744.1| 30S ribosomal protein S1 [Staphylococcus haemolyticus JCSC1435]
          Length = 392

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 6/174 (3%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +E L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 188  LESLNAGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVDSPEDVVSVGQEVDVK 246

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            V SVE  ++R+ +++K  D+       I      H  D++ G++ R+ ++G F+ I    
Sbjct: 247  VKSVEKDAERISLSIK--DTLPTPFESIK--GQFHEDDVIEGKVVRLANFGAFVEIA-PG 301

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            + GL H+SE++ +H+         G++V VKIL +D+E  RISL +K++  K D
Sbjct: 302  VQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKED 355



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 93/170 (54%), Gaps = 10/170 (5%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
            E L  + I++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLDNDEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +V  ++P + RV ++ K  +       + + L +L+ GD++ G++ R+ ++G F+ I   
Sbjct: 157  KVEELDPENNRVILSRKAVEQAENDVKKASLLESLNAGDVIKGKVARLTNFGAFVDIGGV 216

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  GL HVSELS +HVD+ E +   G++V VK+  V+K+  RISL +K +
Sbjct: 217  D--GLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDT 264



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 119/261 (45%), Gaps = 26/261 (9%)

Query: 288 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 340
           ++KV  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 341 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
            IL  + +E     + KAS  E L         G V+KGKV  + +FGA V   GGV  L
Sbjct: 169 -ILSRKAVEQAENDVKKASLLESL-------NAGDVIKGKVARLTNFGAFVDI-GGVDGL 219

Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 458
             +  +S   +  P     VG E+  +V  V+  ++RI+++ K TL     +I   + E 
Sbjct: 220 VHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHED 279

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
               +  G + ++   G FV    GVQG    SE+  +    P      GQ V  +I+  
Sbjct: 280 D---VIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGI 336

Query: 519 IPASRRINLSFMMKPTRVSED 539
              + RI+LS  +K T   ED
Sbjct: 337 DEENERISLS--IKATLPKED 355



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 150/367 (40%), Gaps = 33/367 (8%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAY 70

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
           V  ++      +    L K +L    SY    ++L    I    +T++ K G  V    G
Sbjct: 71  VTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDV--G 128

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQAENDVKK 184

Query: 544 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
                    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 185 ASLLESLNAGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVDSPEDVVSV 239

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
           G E D ++  ++ ++  + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 240 GQEVDVKVKSVEKDAERISLSIKDTLPTPFESI---KGQFHEDDVIEGKVVRLANFGAFV 296

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL-----KQSC 709
                + G    S+          +    GQ V   IL ++ E  RI+LS+     K+  
Sbjct: 297 EIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKEDV 356

Query: 710 CSSTDAS 716
             S DA+
Sbjct: 357 VESDDAT 363



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 162/396 (40%), Gaps = 80/396 (20%)

Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 157
           +  ++EG  +T  V+ +ED   ++H     F G +P + L+    EN    VK G  ++ 
Sbjct: 10  INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEA 69

Query: 158 VV------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL-- 193
            V                  R ++  +   YL    D    +   VT+ +KG + +D+  
Sbjct: 70  YVTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDVGQ 129

Query: 194 --LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 251
              VP  ++ST           +   + F G      ++   P  N             R
Sbjct: 130 RGFVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------R 167

Query: 252 ILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 311
           ++    + +AV    N   +   +    +  GD+  + KV R+    G  +DI       
Sbjct: 168 VIL---SRKAVEQAEND--VKKASLLESLNAGDVI-KGKVARL-TNFGAFVDIGGVD--- 217

Query: 312 PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL--VF 366
              V +S+++ E V   E     G  V V++    +  E ++  I     + FE +   F
Sbjct: 218 -GLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQF 276

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
              DV     ++GKV+ + +FGA V+   GV+ L  +  ++   I  PG+K + G ++  
Sbjct: 277 HEDDV-----IEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNV 331

Query: 427 RVLGV--KSKRITVTHKKTL-----VKSKLAILSSY 455
           ++LG+  +++RI+++ K TL     V+S  A   SY
Sbjct: 332 KILGIDEENERISLSIKATLPKEDVVESDDATTQSY 367



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 117/290 (40%), Gaps = 55/290 (18%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKQGDEIEA 69

Query: 602 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 652
            +    +D E+     S  Y L  S +QL ++ S+      +  + ++   V  +++ G 
Sbjct: 70  YVTKIEVDEEND----SGVYIL--SKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGL 123

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    + 
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQAE 179

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 772
            D           +K ++L+S                G VI+GKV    +FG  V     
Sbjct: 180 NDV----------KKASLLES-------------LNAGDVIKGKVARLTNFGAFVDI--- 213

Query: 773 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
             V G +   +L+   V+S         DV    + VD+ +K+V  D  R
Sbjct: 214 GGVDGLVHVSELSHEHVDSPE-------DVVSVGQEVDVKVKSVEKDAER 256


>gi|336054211|ref|YP_004562498.1| 30S ribosomal protein S1 [Lactobacillus kefiranofaciens ZW3]
 gi|333957588|gb|AEG40396.1| 30S ribosomal protein S1 [Lactobacillus kefiranofaciens ZW3]
          Length = 403

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +++G V  +T+ G F+ +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFVDVG-GVDGLVHISEISYKHVDKPSDVLKAGQEVKVKVIGIDNDR 258

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
             R+ +++K  +     Q+     +NL+ GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQIEPSPFEQA----TANLNEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            E+S  HVD    + + G++VKVK+L +D   +RISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQEVKVKVLNIDPSDKRISLSIKAA 354



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G V++GKV  + +FGA V   GGV  L  +  +S   + KP    K G E+  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFVDV-GGVDGLVHISEISYKHVDKPSDVLKAGQEVKVKVIGIDN 256

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAP 489
            R    H+ +L   ++   S + +AT  L    +  G +  +   G FV   +G+QG   
Sbjct: 257 DR----HRISLSIKQIE-PSPFEQATANLNEGDVFEGEVKSLTNFGAFVEVADGIQGLVH 311

Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
            SE+      +PS +  VGQ VK ++++  P+ +RI+LS        S  D
Sbjct: 312 VSEISNKHVDKPSDVLKVGQEVKVKVLNIDPSDKRISLSIKAADPNASSSD 362



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 34/197 (17%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD++ G++S++ +   G  V +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFVDVG-GVDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++                    P    +   +L+  
Sbjct: 244  GQEVKVKVIGIDND---RHRISLSIKQI-----------------EPSPFEQATANLNEG 283

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQEVKVKVLNIDPS 343

Query: 1315 SKRVEVTLKTSDSRTAS 1331
             KR+ +++K +D   +S
Sbjct: 344  DKRISLSIKAADPNASS 360



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 133/323 (41%), Gaps = 42/323 (13%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA---ILSSYAEATDRLITHG 466
           ++VKPG KFK    LV R  G   +        T +K + A   +   Y E        G
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDYEEGN---AIEG 117

Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIP 520
            +T   + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P
Sbjct: 118 TVTSSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDP 167

Query: 521 ASRRINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 574
              R+ LS   +++  R    D V     +G ++ G V  +T     V V   G   G +
Sbjct: 168 NKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFVDV---GGVDGLV 224

Query: 575 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 633
               ++   +H      V+K G E   +++ +DN+   + LS K    +  +Q     ++
Sbjct: 225 HISEIS--YKHVDKPSDVLKAGQEVKVKVIGIDNDRHRISLSIKQIEPSPFEQA---TAN 279

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           ++   V  G V ++   G FV     + G    S+  +      S    VGQ V+  +L+
Sbjct: 280 LNEGDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQEVKVKVLN 339

Query: 694 VNSETGRITLSLKQS--CCSSTD 714
           ++    RI+LS+K +    SS+D
Sbjct: 340 IDPSDKRISLSIKAADPNASSSD 362


>gi|213965205|ref|ZP_03393402.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
 gi|213952057|gb|EEB63442.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
          Length = 487

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 170/383 (44%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD +  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDEIDAL 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++      + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEQLKENDEPVTGTVIEVVKG--GLIL 138

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG---------------QEIEAKIIELDKNRN---N 180

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLEVDLNRERVSLSLKAT-----QEDP 281

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+  H+D  + I    E
Sbjct: 282  WRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELASRHIDVPDQIVSVDE 340

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +V VK++ +D E+RRISL +K +
Sbjct: 341  QVMVKVIDIDLERRRISLSLKQA 363



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 8/183 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVT 257

Query: 426 FRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLEVDLNRERVSLSLKATQEDPWRVFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-DLV 542
           ++G    SEL       P  +  V + V  +++      RRI+LS        +E+ D  
Sbjct: 315 IEGLVHISELASRHIDVPDQIVSVDEQVMVKVIDIDLERRRISLSLKQADEDFTEEFDPT 374

Query: 543 KLG 545
           K G
Sbjct: 375 KYG 377



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 164/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEQLKE-NDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D     + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLEVDLNRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+          +   V + V   ++D++ E  RI+LSLKQ+     D  F +
Sbjct: 315 IEGLVHISELASRHIDVPDQIVSVDEQVMVKVIDIDLERRRISLSLKQA-----DEDFTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPTKYGMGDSYDEQGNYIFPEGFDPETNEWMEGF 405


>gi|395237266|ref|ZP_10415353.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
 gi|423350857|ref|ZP_17328509.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
 gi|394487499|emb|CCI83441.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
 gi|404387158|gb|EJZ82283.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
          Length = 481

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 184/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS   F    D +I     G  V G V K+D++  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEDFLAAVDETIKYFNDGDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P E+ E      +G  V   VL+  KE K  RL+L   +        DI     +
Sbjct: 69   KHDVDPDEVVE------LGDEVDALVLT--KEDKDGRLILSKKRAQYERAWGDI-----E 115

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                  + V G + +++ G  GL++ IG   +      E++ +   +P  G +       
Sbjct: 116  RLKENDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLEPYIGAE------- 166

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 167  --------LEAKIIELDKHRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVNVGDEVTVEVL 261

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ + +  +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGSFVRV-DEGI 315

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL++ HVD  + I   GE++ VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVDVPDQIVTVGEELMVKVIDIDLERRRISLSLKQA 363



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 7/176 (3%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVNVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGSFVRVDEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
           ++G    SEL       P  +  VG+ +  +++      RRI+LS        +E+
Sbjct: 315 IEGLVHISELAQRHVDVPDQIVTVGEELMVKVIDIDLERRRISLSLKQADDDFTEE 370



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 164/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ +D    ++      + + P   +S    V P +  ++G E+   VL  + 
Sbjct: 34  GDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVELGDEVDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KDGRLILSKKRAQYERAWGDIERLKE-NDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      EP    ++G  ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGAELEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVNVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGSFVRVDEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+          +   VG+ +   ++D++ E  RI+LSLKQ+     D  F +
Sbjct: 315 IEGLVHISELAQRHVDVPDQIVTVGEELMVKVIDIDLERRRISLSLKQA-----DDDFTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W+EG+
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGY 405


>gi|116629547|ref|YP_814719.1| 30S ribosomal protein S1 [Lactobacillus gasseri ATCC 33323]
 gi|238852697|ref|ZP_04643107.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4]
 gi|282852070|ref|ZP_06261428.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1]
 gi|311110810|ref|ZP_07712207.1| ribosomal protein S1 [Lactobacillus gasseri MV-22]
 gi|420147301|ref|ZP_14654577.1| 30S ribosomal protein S1 [Lactobacillus gasseri CECT 5714]
 gi|116095129|gb|ABJ60281.1| SSU ribosomal protein S1P [Lactobacillus gasseri ATCC 33323]
 gi|238834843|gb|EEQ27070.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4]
 gi|282556830|gb|EFB62434.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1]
 gi|311065964|gb|EFQ46304.1| ribosomal protein S1 [Lactobacillus gasseri MV-22]
 gi|398401302|gb|EJN54804.1| 30S ribosomal protein S1 [Lactobacillus gasseri CECT 5714]
          Length = 399

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 10/175 (5%)

Query: 1246 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +V+ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHVDKPSDVLKAG 244

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G F+
Sbjct: 245  QDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFV 300

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             + +  + GL HVSE++  HVD    + + G+ VKVK+L VD   RRISL +K +
Sbjct: 301  EVAD-GIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 416
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   + KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHVDKPSD 239

Query: 417 KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 470
             K G ++  +V+G+   R  I+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDRHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 471 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           +   G FV   +G+QG    SE+      +PS +  VGQ VK +++S  P+ RRI+LS 
Sbjct: 293 LTSFGAFVEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSI 351



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 10/175 (5%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            K LEK+        V+G V      G  + + +R      L+SN    YV S  K + IG
Sbjct: 103  KELEKV--FEEGKTVEGTVTGAVRGGLLVDVGTRGFLPASLISNR---YV-SDLKPY-IG 155

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            K +  ++  ++P   R+ ++ K    +   ++  N  S L VGD V G++ R+  +G F+
Sbjct: 156  KKMNLKITEIDPNKNRLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFGAFV 215

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             +   +  GL H+SE+S  HVD    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 216  DVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQT 268



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 38/245 (15%)

Query: 1086 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1145
            +IGK +   +  I+  K   RL+L   +  + +K  + + +N+ + +  GD V G++S+ 
Sbjct: 153  YIGKKMNLKITEIDPNKN--RLILS--RKDLIEKEREEAFENVASQLVVGDTVEGKVSR- 207

Query: 1146 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1205
            L+G G  V   G  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  LTGFGAFVDVGG--VDGLVHISEISYKHVDKP--------SDVLKA---GQDVKVKVIGI 254

Query: 1206 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1265
                     + LS++ +L                 P    E  E L    I++G VK +T
Sbjct: 255  DDD---RHRISLSIKQTL-----------------PSPFEEATEGLHEGDIIEGEVKTLT 294

Query: 1266 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325
            S G F+ ++  +   V +S +++ +V+ P     +G+ V  +VLSV+P  +R+ +++K +
Sbjct: 295  SFGAFVEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354

Query: 1326 DSRTA 1330
            D   A
Sbjct: 355  DPNAA 359



 Score = 45.4 bits (106), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGDKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 523
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 524 RINLS---FMMKPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R+ LS    + K    + +++     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             ++ G V  +   G FV     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFVEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDP 342

Query: 697 ETGRITLSLKQS 708
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354


>gi|94987197|ref|YP_595130.1| 30S ribosomal protein S1 [Lawsonia intracellularis PHE/MN1-00]
 gi|442556035|ref|YP_007365860.1| 30S ribosomal protein S1 [Lawsonia intracellularis N343]
 gi|94731446|emb|CAJ54809.1| ribosomal protein S1 [Lawsonia intracellularis PHE/MN1-00]
 gi|441493482|gb|AGC50176.1| 30S ribosomal protein S1 [Lawsonia intracellularis N343]
          Length = 574

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 6/160 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1314
            I++G VKN+T  G FI +   +D  + +S++S    V  P + F +G  V  +VL+V+  
Sbjct: 381  ILEGVVKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNELFKVGDTVQAKVLTVDQE 440

Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
            +++  + +K       S    N  S   VG IV G I  +  +GLF+ +E   + GL HV
Sbjct: 441  NEKFTLGIKQLTEDPWS----NAPSVYPVGGIVKGIITNITDFGLFVEVEE-GIEGLVHV 495

Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            SELS   + +   IY+ GE+++ KI+ V  E+RR+ L +K
Sbjct: 496  SELSSKKIKSPSEIYKDGEEIQAKIIHVSAEERRLGLSIK 535



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 11/175 (6%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  + ++ +S   +V G VKNVT  G F+ L   LD  + ++++S   +  P +   +G+
Sbjct: 196  KRQDLLQTISEGQVVVGKVKNVTEYGVFVDLG-GLDGLLHITDMSWKRIRHPREMVNLGQ 254

Query: 1303 LVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
             +  +VLS +  +++V + LK    D            S+ HVG     ++  +  YG+F
Sbjct: 255  ELELKVLSFDKENQKVSLGLKQLVPDPWQDITERFPETSH-HVG-----KVTNLVDYGVF 308

Query: 1361 ITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + +E + + GL H+SE+S    + +   +   G++V+V IL +D++K+RISLGMK
Sbjct: 309  VELE-SGVEGLVHISEMSWTRKLRHPSQMVHQGDEVEVVILGIDQDKKRISLGMK 362



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 146/352 (41%), Gaps = 43/352 (12%)

Query: 197 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA------ 250
           G +V  +V+++ E GV +       G   + H+ +     +WK   +  + VN       
Sbjct: 207 GQVVVGKVKNVTEYGVFVDL----GGLDGLLHITDM----SWKRIRHPREMVNLGQELEL 258

Query: 251 RILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 304
           ++L  D  ++ V L L     +P+  +  R P +   VG + +      VD G+ + L+ 
Sbjct: 259 KVLSFDKENQKVSLGLKQLVPDPWQDITERFPETSHHVGKVTN-----LVDYGVFVELE- 312

Query: 305 PSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGFRHLE---GLATGILKASA 360
                     V IS+++   ++R   +   +G  V V ILG    +    L    +K + 
Sbjct: 313 ----SGVEGLVHISEMSWTRKLRHPSQMVHQGDEVEVVILGIDQDKKRISLGMKQVKPNP 368

Query: 361 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFK 419
           +E           G +++G V  +  FG  +    G+  L  +  +S  + V+ P + FK
Sbjct: 369 WE---LVGEKYPEGTILEGVVKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNELFK 425

Query: 420 VGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 477
           VG  +  +VL V  ++++ T+  K+          S Y       I  G IT I   G F
Sbjct: 426 VGDTVQAKVLTVDQENEKFTLGIKQLTEDPWSNAPSVYPVGG---IVKGIITNITDFGLF 482

Query: 478 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           V    G++G    SEL       PS +Y  G+ ++ +I+      RR+ LS 
Sbjct: 483 VEVEEGIEGLVHVSELSSKKIKSPSEIYKDGEEIQAKIIHVSAEERRLGLSI 534



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 93/173 (53%), Gaps = 10/173 (5%)

Query: 1245 LEKIEDLS-PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
             +++EDL   N I++G +     KG + +  R ++A +  S++    V  P+ +  + + 
Sbjct: 110  FDQLEDLQEKNGIIKGRIVRRI-KGGYTIDLRGVEAFLPGSHVDLRPV--PDMDMLVNQE 166

Query: 1304 VAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
               RVL +      V V+ +    + R + + ++  L  +  G +V+G++K V  YG+F+
Sbjct: 167  YEFRVLKINRRRSNVIVSRRVLLEEERDSKRQDL--LQTISEGQVVVGKVKNVTEYGVFV 224

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
             +    L GL H++++S   + +   +   G+++++K+L  DKE +++SLG+K
Sbjct: 225  DL--GGLDGLLHITDMSWKRIRHPREMVNLGQELELKVLSFDKENQKVSLGLK 275


>gi|406838677|ref|ZP_11098271.1| 30S ribosomal protein S1 [Lactobacillus vini DSM 20605]
          Length = 405

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 111/213 (52%), Gaps = 10/213 (4%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  E +  L+   +V+G V  +T+ G F+ L   +D  V +S ++   V+ P     +G+
Sbjct: 190  KKAETLAKLAAGDVVEGKVARLTNFGAFVDLG-GVDGLVHVSEIAFERVDKPSDVLKVGQ 248

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             V  +VLSV+P  +RV +++K    +T  Q        +  GD++ G +KR+ S+G F+ 
Sbjct: 249  EVKVKVLSVDPDKERVSLSIK----QTLPQPWDQVSEKIAEGDVIEGTVKRLTSFGAFVE 304

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
            +    + GL H+S++S  H+     +  +GEK+KVK+L V  E+ R+ L +K+   K  A
Sbjct: 305  V-LPGVEGLVHISQISHKHIATPNEVLTSGEKIKVKVLSVHPEQHRLGLSIKALEEKPVA 363

Query: 1423 DNLQMSSEEESDEAI----EEVGSYNRSSLLEN 1451
               +  + +++D ++    EE   +    L+ N
Sbjct: 364  GETKKLAAKKTDSSVANAPEESTGFTLGDLVGN 396



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 79/135 (58%), Gaps = 8/135 (5%)

Query: 1284 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNL 1341
            S + D YVE    +F  G+ +  +++ +EP   R+ ++ K      R A ++E   L+ L
Sbjct: 143  SMIEDHYVEDL-NQFK-GQTLELKIIEIEPSENRLILSHKEIVKAEREAKKAE--TLAKL 198

Query: 1342 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1401
              GD+V G++ R+ ++G F+ +   +  GL HVSE++ + VD    + + G++VKVK+L 
Sbjct: 199  AAGDVVEGKVARLTNFGAFVDLGGVD--GLVHVSEIAFERVDKPSDVLKVGQEVKVKVLS 256

Query: 1402 VDKEKRRISLGMKSS 1416
            VD +K R+SL +K +
Sbjct: 257  VDPDKERVSLSIKQT 271



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE--FEIV-KPGKKFKVGAE 423
           T + +  G VV+GKV  + +FGA V   GGV  L    H+SE  FE V KP    KVG E
Sbjct: 194 TLAKLAAGDVVEGKVARLTNFGAFVDL-GGVDGLV---HVSEIAFERVDKPSDVLKVGQE 249

Query: 424 LVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 481
           +  +VL V    +R++++ K+TL +    +    AE     +  G + ++   G FV   
Sbjct: 250 VKVKVLSVDPDKERVSLSIKQTLPQPWDQVSEKIAEGD---VIEGTVKRLTSFGAFVEVL 306

Query: 482 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
            GV+G    S++       P+ +   G+ +K +++S  P   R+ LS 
Sbjct: 307 PGVEGLVHISQISHKHIATPNEVLTSGEKIKVKVLSVHPEQHRLGLSI 354



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 142/353 (40%), Gaps = 59/353 (16%)

Query: 482 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 538
            GV+G  P  EL + PG + +    VG V    ++S I  S +   S+++   R+     
Sbjct: 46  TGVEGVVPFKELSVKPGEDVTKQIKVGDVFDLVVISKI-GSDKEGGSYLLSQRRLEARKV 104

Query: 539 -DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVI 593
            D++ K    G  +S  V  V    +VV    +G+    IP   + DH +E     K   
Sbjct: 105 WDEIEKKYEAGETISAPVTQVVKGGLVVDAGVRGF----IPASMIEDHYVEDLNQFK--- 157

Query: 594 KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL--PSDASHIHPNSVVHGYVCNIIETG 651
             G   +  ++    S N L+ +   ++ + ++       + +    VV G V  +   G
Sbjct: 158 --GQTLELKIIEIEPSENRLILSHKEIVKAEREAKKAETLAKLAAGDVVEGKVARLTNFG 215

Query: 652 CFVRFLGRLTGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710
            FV  LG + G    S+ +  +R D  S    VGQ V+  +L V+ +  R++LS+KQ+  
Sbjct: 216 AFVD-LGGVDGLVHVSE-IAFERVDKPSDVLKVGQEVKVKVLSVDPDKERVSLSIKQTLP 273

Query: 711 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 770
              D         + EKIA                    G VIEG V     FG  V  E
Sbjct: 274 QPWDQ--------VSEKIAE-------------------GDVIEGTVKRLTSFGAFV--E 304

Query: 771 EHSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 816
               V G      I+H  +A     + SG  I+  +L V   +  + LS+K +
Sbjct: 305 VLPGVEGLVHISQISHKHIATPNEVLTSGEKIKVKVLSVHPEQHRLGLSIKAL 357



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 18/180 (10%)

Query: 396 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILS 453
           GV+   P   M E   V+   +FK G  L  +++ ++    R+ ++HK+ +   + A   
Sbjct: 135 GVRGFIP-ASMIEDHYVEDLNQFK-GQTLELKIIEIEPSENRLILSHKEIVKAEREA--- 189

Query: 454 SYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
             AE   +L    +  G + ++   G FV    GV G    SE+  +   +PS +  VGQ
Sbjct: 190 KKAETLAKLAAGDVVEGKVARLTNFGAFVDL-GGVDGLVHVSEIAFERVDKPSDVLKVGQ 248

Query: 510 VVKCRIMSSIPASRRINLSF---MMKP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI 565
            VK +++S  P   R++LS    + +P  +VSE   +  G ++ G V  +T     V V+
Sbjct: 249 EVKVKVLSVDPDKERVSLSIKQTLPQPWDQVSEK--IAEGDVIEGTVKRLTSFGAFVEVL 306


>gi|227889870|ref|ZP_04007675.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200]
 gi|227849734|gb|EEJ59820.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200]
          Length = 400

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 10/175 (5%)

Query: 1246 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +++ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHIDKPSDVLKAG 244

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G FI
Sbjct: 245  QDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFI 300

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             + +  + GL HVSE++  HVD    + + G+ VKVK+L VD   RRISL +K +
Sbjct: 301  EVAD-GIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDPSDRRISLSIKQA 354



 Score = 77.4 bits (189), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 17/179 (9%)

Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 416
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   I KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHIDKPSD 239

Query: 417 KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 470
             K G ++  +V+G+   R  I+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDRHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 471 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           +   G F+   +G+QG    SE+      +PS +  VGQ VK +++   P+ RRI+LS 
Sbjct: 293 LTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDPSDRRISLSI 351



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 10/175 (5%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            K LEK+        V+G V      G  + + +R      L+SN    YV S  K + IG
Sbjct: 103  KELEKV--FEEGKTVEGTVTGAVRGGLLVDVGTRGFLPASLISNR---YV-SDLKPY-IG 155

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            K +  ++  ++P   R+ ++ K    +   ++  N  S L VGD V G++ R+  +G F+
Sbjct: 156  KKMNLKITEIDPNKNRLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFV 215

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             +   +  GL H+SE+S  H+D    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 216  DVGGVD--GLVHISEISYKHIDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQT 268



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 52/235 (22%)

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD V G++S+ L+G G  V   G  + G VH +E+    +  P         D L     
Sbjct: 198  GDTVEGKVSR-LTGFGAFVDVGG--VDGLVHISEISYKHIDKP--------SDVLKA--- 243

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK KV+ I         + LS++ +L                 P    E  E L   
Sbjct: 244  GQDVKVKVIGIDDD---RHRISLSIKQTL-----------------PSPFEEATEGLHEG 283

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
             I++G VK +TS G FI ++  +   V +S +++ +V+ P     +G+ V  +VL V+P 
Sbjct: 284  DIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDPS 343

Query: 1315 SKRVEVTLKTSDSRTASQSEIN-----------------NLSNLHVGDIVIGQIK 1352
             +R+ +++K +D   A++SE N                 N +   +GDI+  Q+K
Sbjct: 344  DRRISLSIKQADP-NAAKSENNSRPRRRQDSVADKYMNDNDNGFALGDIIGDQLK 397



 Score = 43.9 bits (102), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGDKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 523
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 524 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577
           R+ LS   +++  R    + V     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 636
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHIDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
             ++ G V  +   G F+     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDP 342

Query: 697 ETGRITLSLKQS 708
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354


>gi|392955741|ref|ZP_10321271.1| 30S ribosomal protein S1 [Bacillus macauensis ZFHKF-1]
 gi|391877983|gb|EIT86573.1| 30S ribosomal protein S1 [Bacillus macauensis ZFHKF-1]
          Length = 381

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 100/185 (54%), Gaps = 6/185 (3%)

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
             K   ++  L P  ++ G V+ +T+ G F+ L   +D  V +S LS   VE P +    G
Sbjct: 177  AKKQNRLSALEPGQVITGTVRRMTNFGAFVDLG-GIDGLVHISQLSYQRVEHPSEVVEEG 235

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
            + VA +VLSV+  + RV +++K  D +    + +   + +  G IV G +KR+ ++G F+
Sbjct: 236  QEVAVKVLSVDRDNDRVSLSIK--DVQPGPWASLP--ATIASGAIVTGTVKRLTTFGAFV 291

Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
             +   N+ GL H+SE+S  H+     +   GE V VKIL++    +R+SL MK+     +
Sbjct: 292  EVA-PNVEGLVHISEMSSRHIGKPSEVVSVGETVTVKILELTVADKRMSLSMKAVEEAEN 350

Query: 1422 ADNLQ 1426
            A +++
Sbjct: 351  AADIK 355



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S ++PG V+ G V  + +FGA V   GG+  L  +  +S   +  P +  + G E+  +V
Sbjct: 184 SALEPGQVITGTVRRMTNFGAFVDL-GGIDGLVHISQLSYQRVEHPSEVVEEGQEVAVKV 242

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   + R++++ K        ++ ++ A      I  G + ++   G FV     V+G
Sbjct: 243 LSVDRDNDRVSLSIKDVQPGPWASLPATIASGA---IVTGTVKRLTTFGAFVEVAPNVEG 299

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SE+      +PS +  VG+ V  +I+    A +R++LS 
Sbjct: 300 LVHISEMSSRHIGKPSEVVSVGETVTVKILELTVADKRMSLSM 342



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 153/360 (42%), Gaps = 20/360 (5%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G + +G V+ ++   AI+       A+ P+  +S   +       +VG  +  +VL +  
Sbjct: 18  GEITEGTVLKIEDKLAILDVKYKQDAILPINEVSNVAVDHVSDVLQVGDRVTVKVLAMSD 77

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
           +++TV+ K     S  + L +  E+ +  +    +  + K G       GV+GF P S +
Sbjct: 78  EQLTVSKKAVDSVSSWSELHAKLESQE--VFSVTVLDVVKGGLVADV--GVRGFIPASMV 133

Query: 494 GLDPGCEPSSMYHVGQVVKCRIM----SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 549
                 + SS  +    VK   +    + +  S RI L       + +    ++ G +++
Sbjct: 134 DTAFIDDFSSFKNKTLTVKVVELDQEKNRVILSHRIVLEEEEAAKKQNRLSALEPGQVIT 193

Query: 550 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDN 607
           G V  +T     V +   G   G +    L+   +EH +    V++ G E   ++L +D 
Sbjct: 194 GTVRRMTNFGAFVDL---GGIDGLVHISQLSYQRVEHPS---EVVEEGQEVAVKVLSVDR 247

Query: 608 ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 667
           ++  + LS K         LP   + I   ++V G V  +   G FV     + G    S
Sbjct: 248 DNDRVSLSIKDVQPGPWASLP---ATIASGAIVTGTVKRLTTFGAFVEVAPNVEGLVHIS 304

Query: 668 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 727
           +         S+   VG++V   IL++     R++LS+K +   + +A+ ++E+F  EEK
Sbjct: 305 EMSSRHIGKPSEVVSVGETVTVKILELTVADKRMSLSMK-AVEEAENAADIKENFPKEEK 363


>gi|390939813|ref|YP_006403550.1| 30S ribosomal protein S1 [Sulfurospirillum barnesii SES-3]
 gi|390192920|gb|AFL67975.1| ribosomal protein S1 [Sulfurospirillum barnesii SES-3]
          Length = 558

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 103/478 (21%), Positives = 212/478 (44%), Gaps = 72/478 (15%)

Query: 940  SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA- 998
            +L+   +  IK   + +  G    GR++ +EV D+  N+        K+G  +   I   
Sbjct: 37   ALINGVVVAIKEDVILVDVGKKSEGRLNASEVTDENGNIT------CKVGDVIPVVITGF 90

Query: 999  KSNKPDMK-KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1057
            ++ +P +  K  L +  IK  +   +E        E DV+   ++TG      N+   + 
Sbjct: 91   RNERPAVSHKKALRKDRIKAFIAEYNE--------EEDVAFDVKITGK-----NKGGFIA 137

Query: 1058 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS 1117
             ++    + F+  S     ++        +GK +   ++ I++  + + +  + + D   
Sbjct: 138  ENKD-GIEFFLPRSQAAVKDMNSL-----MGKTLKVKIIKIDEATESIIISRKKYLDDDR 191

Query: 1118 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP 1177
             K  +I    +Q  I   ++V G I KI +   G+ V +G  + G VH++E+        
Sbjct: 192  KKRKEI----VQELIDRDEVVDGTIKKITTY--GMFVDVGG-IDGLVHYSEI-------- 236

Query: 1178 LSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1237
               Y +G  +P + Y EG+ +  K ++  +  R   H+ LS+++++              
Sbjct: 237  --SY-KGPVNPGTLYKEGEVIPVKAIKYDKDKR---HLSLSIKAAM-------------- 276

Query: 1238 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEK 1296
               P    E  ++L     +Q  + N+   G F+ L   ++  + +S +S D  ++ P  
Sbjct: 277  ---PDPWDEIKDELETGDSIQVTISNIEPYGAFVDLGNDIEGFLHISEISWDKNIKHPRD 333

Query: 1297 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1356
                G++V   V+ ++   +R+ V+LK   ++   +          VGDIV G+I  + +
Sbjct: 334  YIEEGQVVDVEVIEIDAKERRLRVSLKNVLAKPFDEFR----KKFKVGDIVKGEITTITA 389

Query: 1357 YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            +G F+ I    + GL H  + S D  +  + ++  G++V+VKI+K+D+E  ++SL  K
Sbjct: 390  FGAFVKI--GGIEGLLHNEDASWDRNNKCKELFAVGDEVEVKIVKIDEEAEKVSLSKK 445



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 109/518 (21%), Positives = 196/518 (37%), Gaps = 84/518 (16%)

Query: 333 KEGSCVRVRILGFR-------HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 385
           K G  + V I GFR       H + L    +KA  F        DV   + + GK    +
Sbjct: 78  KVGDVIPVVITGFRNERPAVSHKKALRKDRIKA--FIAEYNEEEDVAFDVKITGK----N 131

Query: 386 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKT 443
             G I +   G++   P    +    VK      +G  L  +++ +   ++ I ++ KK 
Sbjct: 132 KGGFIAENKDGIEFFLPRSQAA----VKDMNSL-MGKTLKVKIIKIDEATESIIISRKKY 186

Query: 444 LVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 502
           L   +        E  DR  +  G I KI  +G FV    G+ G    SE+       P 
Sbjct: 187 LDDDRKKRKEIVQELIDRDEVVDGTIKKITTYGMFVDV-GGIDGLVHYSEISYKGPVNPG 245

Query: 503 SMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNA 559
           ++Y  G+V+  + +      R ++LS    M  P    +D+L + G  +   +  + P  
Sbjct: 246 TLYKEGEVIPVKAIKYDKDKRHLSLSIKAAMPDPWDEIKDEL-ETGDSIQVTISNIEPYG 304

Query: 560 VVV----------YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 609
             V          ++    + K     +H  D++E   V+           +++ +D + 
Sbjct: 305 AFVDLGNDIEGFLHISEISWDKNI---KHPRDYIEEGQVVDV---------EVIEIDAKE 352

Query: 610 SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669
             L +S K  L   A+             +V G +  I   G FV+ +G + G      A
Sbjct: 353 RRLRVSLKNVL---AKPFDEFRKKFKVGDIVKGEITTITAFGAFVK-IGGIEGLLHNEDA 408

Query: 670 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 729
              +     + + VG  V   I+ ++ E  +++LS K+                LE+   
Sbjct: 409 SWDRNNKCKELFAVGDEVEVKIVKIDEEAEKVSLSKKE----------------LEDSPI 452

Query: 730 MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH---QLAG 786
              +  H             G ++ GK+ +  +FG+ V  EE+ D    I      Q+  
Sbjct: 453 QKYAKTHEN-----------GDIVHGKIRDIKEFGIFVELEENVD--ALIRKEDLGQVNE 499

Query: 787 ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 824
           A ++ G  I+AAI  +   +  + LS++ +   + REA
Sbjct: 500 ADLKIGDEIEAAITFIDDKKNRIRLSVRRLSKLKEREA 537



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 68/119 (57%), Gaps = 6/119 (5%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1357
            +GK +  +++ ++  ++ + ++ K    D R   +  +  L  +   ++V G IK++ +Y
Sbjct: 161  MGKTLKVKIIKIDEATESIIISRKKYLDDDRKKRKEIVQEL--IDRDEVVDGTIKKITTY 218

Query: 1358 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            G+F+ +   +  GL H SE+S     N  T+Y+ GE + VK +K DK+KR +SL +K++
Sbjct: 219  GMFVDVGGID--GLVHYSEISYKGPVNPGTLYKEGEVIPVKAIKYDKDKRHLSLSIKAA 275



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 130/292 (44%), Gaps = 48/292 (16%)

Query: 1126 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
            D ++  +  GD +   IS I     G  V +G  + G +H +E+           +D+  
Sbjct: 281  DEIKDELETGDSIQVTISNIEPY--GAFVDLGNDIEGFLHISEI----------SWDKNI 328

Query: 1186 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1245
              P    +EGQ V  +V+EI    R        LR SL  +       L+   D   K  
Sbjct: 329  KHPRDYIEEGQVVDVEVIEIDAKER-------RLRVSLKNV-------LAKPFDEFRKKF 374

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE-KE-FPIGKL 1303
             K+ D     IV+G +  +T+ G F+ +      + LL N    +  + + KE F +G  
Sbjct: 375  -KVGD-----IVKGEITTITAFGAFVKIG---GIEGLLHNEDASWDRNNKCKELFAVGDE 425

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFIT 1362
            V  +++ ++  +++V ++      +    S I   +  H  GDIV G+I+ ++ +G+F+ 
Sbjct: 426  VEVKIVKIDEEAEKVSLS-----KKELEDSPIQKYAKTHENGDIVHGKIRDIKEFGIFVE 480

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            +E  N+  L    +L + +    E   + G++++  I  +D +K RI L ++
Sbjct: 481  LEE-NVDALIRKEDLGQVN----EADLKIGDEIEAAITFIDDKKNRIRLSVR 527


>gi|404215347|ref|YP_006669542.1| Ribosomal protein S1 [Gordonia sp. KTR9]
 gi|403646146|gb|AFR49386.1| Ribosomal protein S1 [Gordonia sp. KTR9]
          Length = 492

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IG+   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  V-DEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 160/410 (39%), Gaps = 50/410 (12%)

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           + S ++ V    T      AI S+     D  I  G I K+++    +      +G  P 
Sbjct: 6   ITSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPS 65

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSL 547
            EL +    +P+ + +VG  V+  +++      R+ LS      +    + ++L +    
Sbjct: 66  RELSIKHDVDPNEVVNVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEA 125

Query: 548 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 606
           V G V  V    +++ +  +G+   ++        +E   V       G E + +++ LD
Sbjct: 126 VKGTVIEVVKGGLILDIGLRGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELD 177

Query: 607 NESSNLLLSAKYSLINSAQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 665
              +N++LS +  L  +  ++ S+  H +    V  G V +I+  G FV  LG + G   
Sbjct: 178 KNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVH 236

Query: 666 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 725
            S+         S+   VG  V   +LDV+ +  R++LSLK +        F + H    
Sbjct: 237 VSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH---- 291

Query: 726 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 785
                                  IG ++ GKV +   FG  V  +E   + G +   +LA
Sbjct: 292 ----------------------AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELA 327

Query: 786 GATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 828
              VE        G      ++D+    R + LSLK    D   E + ++
Sbjct: 328 ERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407


>gi|227529193|ref|ZP_03959242.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
 gi|227350918|gb|EEJ41209.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
          Length = 410

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 6/165 (3%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L P  +V+G V  +T+ G FI L   +D  V +S +S  +V+ P      G+ V  +VL+
Sbjct: 199  LQPGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPSDVLEAGQEVKVKVLN 257

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
            V+P  +R+ +++K +        E         G ++ G +KR+ S+G F+ +    + G
Sbjct: 258  VDPERERISLSIKQTLPGPWDDIE----EKAPEGSVLTGTVKRLTSFGAFVEV-FPGVEG 312

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            L H+S++S  H+     + + G++VKVK+L VD E +R+ L MK+
Sbjct: 313  LVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEHQRLGLSMKA 357



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 4/136 (2%)

Query: 1281 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1340
            V  S ++D YVE    +F  G+ +  +++ +EP   R+ ++ K        ++     + 
Sbjct: 141  VPASMITDHYVEDL-NQFK-GQELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKEIFAK 198

Query: 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
            L  GD+V G++ R+ ++G FI +   +  GL HVSE+S DHVD    +  AG++VKVK+L
Sbjct: 199  LQPGDVVEGKVARMTNFGAFIDLGGVD--GLVHVSEISYDHVDKPSDVLEAGQEVKVKVL 256

Query: 1401 KVDKEKRRISLGMKSS 1416
             VD E+ RISL +K +
Sbjct: 257  NVDPERERISLSIKQT 272



 Score = 68.2 bits (165), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
           I++A   E      + ++PG VV+GKV  + +FGA +   GGV  L  +  +S   + KP
Sbjct: 183 IVQAQHEEAAKEIFAKLQPGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKP 241

Query: 415 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
               + G E+  +VL V  + +RI+++ K+TL      I     E +   +  G + ++ 
Sbjct: 242 SDVLEAGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAPEGS---VLTGTVKRLT 298

Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             G FV  + GV+G    S++       P+ +   GQ VK ++++  P  +R+ LS 
Sbjct: 299 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEHQRLGLSM 355



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 137/350 (39%), Gaps = 55/350 (15%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 538
           GV+G  P  EL   P  + +    VG  +   ++S I  + + N S+++   R+      
Sbjct: 48  GVEGVVPAKELSTKPVEDINDAVKVGDELDLVVISKI-GNDKENGSYLLSHRRLEARKVW 106

Query: 539 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
           DD+ K    G  ++  V       +VV    +G+   ++ T+H  + L            
Sbjct: 107 DDVQKKFDAGEHITAKVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK-------- 158

Query: 596 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 653
           G E +  ++    S N L+ +   ++ +  +  +    + + P  VV G V  +   G F
Sbjct: 159 GQELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKEIFAKLQPGDVVEGKVARMTNFGAF 218

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
           +  LG + G    S+         S     GQ V+  +L+V+ E  RI+LS+KQ+     
Sbjct: 219 ID-LGGVDGLVHVSEISYDHVDKPSDVLEAGQEVKVKVLNVDPERERISLSIKQTLPGPW 277

Query: 714 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 773
           D         +EEK                      GSV+ G V     FG  V  E   
Sbjct: 278 DD--------IEEKAPE-------------------GSVLTGTVKRLTSFGAFV--EVFP 308

Query: 774 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 816
            V G      I+H  +A     ++ G  ++  +L+V    + + LS+K +
Sbjct: 309 GVEGLVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEHQRLGLSMKAL 358



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 150/351 (42%), Gaps = 30/351 (8%)

Query: 371 VKPGMVVKGKVIAVDS-FGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           VK G VVKG+V+A+D    AIV     GV+ + P   +S   +       KVG EL   V
Sbjct: 21  VKVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKVGDELDLVV 80

Query: 429 LGV-----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
           +       ++    ++H++   +     +    +A + +     +T+  K G  V    G
Sbjct: 81  ISKIGNDKENGSYLLSHRRLEARKVWDDVQKKFDAGEHITAK--VTQAVKGGLVVDA--G 136

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSED 539
           V+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS       +    +++
Sbjct: 137 VRGFVPASMI-TDHYVEDLNQFK-GQELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKE 194

Query: 540 DLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 596
              KL  G +V G V  +T     + +   G   G +    ++ DH++  +    V++ G
Sbjct: 195 IFAKLQPGDVVEGKVARMTNFGAFIDL---GGVDGLVHVSEISYDHVDKPS---DVLEAG 248

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
            E   ++L +D E   + LS K +L      +   A      SV+ G V  +   G FV 
Sbjct: 249 QEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAPE---GSVLTGTVKRLTSFGAFVE 305

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
               + G    S+      A  +     GQ V+  +L+V+ E  R+ LS+K
Sbjct: 306 VFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEHQRLGLSMK 356



 Score = 44.7 bits (104), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 38/207 (18%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            +  GD+V G+++++ +   G  + +G  + G VH +E+    V  P         D L  
Sbjct: 199  LQPGDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEISYDHVDKP--------SDVLEA 247

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
               GQ VK KVL +         + LS++ +L                 PG   + IE+ 
Sbjct: 248  ---GQEVKVKVLNVDPERE---RISLSIKQTL-----------------PGP-WDDIEEK 283

Query: 1252 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            +P   ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+
Sbjct: 284  APEGSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVLN 343

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINN 1337
            V+P  +R+ +++K  + R   + E NN
Sbjct: 344  VDPEHQRLGLSMKALEER--PKDEENN 368


>gi|229096089|ref|ZP_04227062.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
 gi|229102201|ref|ZP_04232910.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
 gi|229115045|ref|ZP_04244455.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
 gi|407703968|ref|YP_006827553.1| histidinol-phosphate aminotransferase 1 [Bacillus thuringiensis MC28]
 gi|423380597|ref|ZP_17357881.1| ribosomal protein S1 [Bacillus cereus BAG1O-2]
 gi|423443629|ref|ZP_17420535.1| ribosomal protein S1 [Bacillus cereus BAG4X2-1]
 gi|423446117|ref|ZP_17422996.1| ribosomal protein S1 [Bacillus cereus BAG5O-1]
 gi|423466720|ref|ZP_17443488.1| ribosomal protein S1 [Bacillus cereus BAG6O-1]
 gi|423536117|ref|ZP_17512535.1| ribosomal protein S1 [Bacillus cereus HuB2-9]
 gi|423538639|ref|ZP_17515030.1| ribosomal protein S1 [Bacillus cereus HuB4-10]
 gi|423544877|ref|ZP_17521235.1| ribosomal protein S1 [Bacillus cereus HuB5-5]
 gi|423618255|ref|ZP_17594089.1| ribosomal protein S1 [Bacillus cereus VD115]
 gi|228668185|gb|EEL23617.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
 gi|228681102|gb|EEL35270.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
 gi|228687049|gb|EEL40954.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
 gi|401133210|gb|EJQ40843.1| ribosomal protein S1 [Bacillus cereus BAG5O-1]
 gi|401177223|gb|EJQ84415.1| ribosomal protein S1 [Bacillus cereus HuB4-10]
 gi|401183052|gb|EJQ90169.1| ribosomal protein S1 [Bacillus cereus HuB5-5]
 gi|401253986|gb|EJR60222.1| ribosomal protein S1 [Bacillus cereus VD115]
 gi|401631349|gb|EJS49146.1| ribosomal protein S1 [Bacillus cereus BAG1O-2]
 gi|402412715|gb|EJV45068.1| ribosomal protein S1 [Bacillus cereus BAG4X2-1]
 gi|402415430|gb|EJV47754.1| ribosomal protein S1 [Bacillus cereus BAG6O-1]
 gi|402461542|gb|EJV93255.1| ribosomal protein S1 [Bacillus cereus HuB2-9]
          Length = 382

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     S Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFSDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 41.2 bits (95), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 29/356 (8%)

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 538
           +GF P S + +    E  S Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFSDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 539 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 596
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDIVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 653
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
           V  L  + G    S+  +    + ++   +GQ V+  +L+V+    RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAL 346


>gi|403727272|ref|ZP_10947560.1| 30S ribosomal protein S1 [Gordonia rhizosphera NBRC 16068]
 gi|403204008|dbj|GAB91891.1| 30S ribosomal protein S1 [Gordonia rhizosphera NBRC 16068]
          Length = 489

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TIASPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +  + GL H+SEL+E HV+  + +    +   VK++ +D E+RRISL +K +
Sbjct: 313  V-DEGIEGLVHISELAERHVEVPDQVVSVSDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-------QA 797
               IG ++ GKV +   FG  V  +E   + G +   +LA   VE    +         
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELAERHVEVPDQVVSVSDDAMV 346

Query: 798 AILDVAKAERLVDLSLKTVFIDRFREANSNR 828
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 159/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   V       ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVSDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407


>gi|441516244|ref|ZP_20997994.1| 30S ribosomal protein S1 [Gordonia hirsuta DSM 44140 = NBRC 16056]
 gi|441456830|dbj|GAC55955.1| 30S ribosomal protein S1 [Gordonia hirsuta DSM 44140 = NBRC 16056]
          Length = 491

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 182/414 (43%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +PSE+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++      + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKERDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          V+ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------VEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNKLGKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +    +   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVSVNDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 450 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 509
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS +  VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGD 84

Query: 510 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 566
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKERDEAVKGTVIEVVKGGLILDIGL 144

Query: 567 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 626 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
           ++ S+  + +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLNKLGKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 255

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 744
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 745 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-------QA 797
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE    +         
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVSVNDDAMV 346

Query: 798 AILDVAKAERLVDLSLK 814
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 45.4 bits (106), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 147/354 (41%), Gaps = 31/354 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKERDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ V+ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNKLG 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            G    S+  +       +   V       ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVNDDAMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|315636540|ref|ZP_07891776.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
 gi|384156568|ref|YP_005539383.1| 30S ribosomal protein S1 [Arcobacter butzleri ED-1]
 gi|315479189|gb|EFU69886.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
 gi|345470122|dbj|BAK71573.1| 30S ribosomal protein S1 [Arcobacter butzleri ED-1]
          Length = 550

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 173/363 (47%), Gaps = 51/363 (14%)

Query: 1058 ISRHLKAQLFILDSA----YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1113
            +S   K    I D+A    + P      + +  IGK V   V+ +NK +  + +V R   
Sbjct: 120  VSVKQKGGFVIEDAAGCEYFMPMAQSYLKTQGAIGKTVKAKVIKVNKAQNSI-IVSRK-- 176

Query: 1114 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1173
              + +++ +I ++ +   + + + + G I KI S   G+ V +G  + G V++ E+    
Sbjct: 177  -KLIEESKNIKDNKVAEILEKKEAINGTIKKITSY--GMFVDLGG-IDGLVNYNEI---- 228

Query: 1174 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1233
                   Y +G  +P + Y+EG  V   VL   +  +   H+ LS++++L          
Sbjct: 229  ------SY-KGPVNPANYYNEGDEVSVVVLAYDKAKQ---HLSLSIKAALS--------- 269

Query: 1234 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVE 1292
                   P K ++   ++   + V   V N  S G F+ L   ++  + +S +S +  ++
Sbjct: 270  ------NPWKEIKDQLEVGDTITVT--VSNFESYGAFVDLGNDIEGLLHISEISWNKNLK 321

Query: 1293 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQI 1351
            +P++   IG  +   V+ +    KR+ V+LK    +  ++       N H VGD++ G+I
Sbjct: 322  NPKELLTIGDEINVEVIELNVEQKRLRVSLKNLQEKPFTK-----FVNEHKVGDVIKGKI 376

Query: 1352 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
              +  +G F+ I + +  GL H  E S +     +T+++ G++V+V+I+K+DKEK  ISL
Sbjct: 377  ATLTDFGAFVNIGDVD--GLLHNEEASWESNAKCKTLFKKGDEVEVRIIKIDKEKENISL 434

Query: 1412 GMK 1414
             +K
Sbjct: 435  SIK 437



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 109/514 (21%), Positives = 216/514 (42%), Gaps = 73/514 (14%)

Query: 331 KYKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 388
           KY  G  + V ++G +      +   +L+   F+  V TH +    + ++GK+++V   G
Sbjct: 67  KYNVGDVIPVMLMGNKGERPNISHKKVLQKEKFDNFVKTHGEDFEDVTIEGKIVSVKQKG 126

Query: 389 A-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV 445
             +++   G +   P   M++  +   G    +G  +  +V+ V   +  I V+ KK + 
Sbjct: 127 GFVIEDAAGCEYFMP---MAQSYLKTQG---AIGKTVKAKVIKVNKAQNSIIVSRKKLIE 180

Query: 446 KSKLAILSSYAEATDRL-ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 504
           +SK    +  AE  ++    +G I KI  +G FV    G+ G    +E+       P++ 
Sbjct: 181 ESKNIKDNKVAEILEKKEAINGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVNPANY 239

Query: 505 YHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 561
           Y+ G  V   +++   A + ++LS    +  P +  +D L ++G  ++  V V    +  
Sbjct: 240 YNEGDEVSVVVLAYDKAKQHLSLSIKAALSNPWKEIKDQL-EVGDTIT--VTVSNFESYG 296

Query: 562 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNESSNLLL 614
            +V      +G +       H+   +  K++  P      G E + +++ L+ E   L +
Sbjct: 297 AFVDLGNDIEGLL-------HISEISWNKNLKNPKELLTIGDEINVEVIELNVEQKRLRV 349

Query: 615 SAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 672
           S K     + Q+ P +   + H    V+ G +  + + G FV  +G + G     +A   
Sbjct: 350 SLK-----NLQEKPFTKFVNEHKVGDVIKGKIATLTDFGAFVN-IGDVDGLLHNEEASWE 403

Query: 673 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 732
             A     +  G  V   I+ ++ E   I+LS+K    S + A   Q+ + L        
Sbjct: 404 SNAKCKTLFKKGDEVEVRIIKIDKEKENISLSIKD--ISDSPAKRFQDAYKL-------- 453

Query: 733 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ---LAGATV 789
                            G +++G V +  DFG+ +  E + D  G I +     L    V
Sbjct: 454 -----------------GDIVKGPVKDIKDFGIFIKLENNLD--GLIRNEDFGPLKADEV 494

Query: 790 ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
           ++G  I+A I+++   +  V LS++ +   + RE
Sbjct: 495 KNGDEIEAVIINIDTKKNRVRLSVRRLEQQQERE 528


>gi|227488118|ref|ZP_03918434.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
            51867]
 gi|227541514|ref|ZP_03971563.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
            51866]
 gi|227091980|gb|EEI27292.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
            51867]
 gi|227182670|gb|EEI63642.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
            51866]
          Length = 482

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 128/268 (47%), Gaps = 39/268 (14%)

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
            GGL++ IG   +      E++ +   +P  G               Q ++ K++E+ +  
Sbjct: 134  GGLILDIGLRGFLPASLVEMRRVRDLEPYIG---------------QEIEAKIIELDKNR 178

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
                +V LS R+ L+   S   S+              +  L    + +G V ++ + G 
Sbjct: 179  N---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGA 222

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +    
Sbjct: 223  FVDLG-GVDGLVHVSELSWKHIDHPSEVVSVGDEVTVEVLDVDLDRERVSLSLKAT---- 277

Query: 1330 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
              +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +
Sbjct: 278  -QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQV 335

Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKSS 1416
               G+++ VK++ +D E+RRISL +K +
Sbjct: 336  VSVGQEIMVKVIDIDLERRRISLSLKQA 363



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVSVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++G    SEL       P  +  VGQ +  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVSVGQEIMVKVIDIDLERRRISLSL 360



 Score = 41.6 bits (96), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 139/338 (41%), Gaps = 48/338 (14%)

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLLLSKKRAQYERAWGTIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H + + SV   G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVSV---GDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+          +   VGQ +   ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVSVGQEIMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W+EG+
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGY 405


>gi|239636851|ref|ZP_04677850.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
 gi|239597525|gb|EEQ80023.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
          Length = 392

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 101/192 (52%), Gaps = 22/192 (11%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            ++ L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE+   +G  V  +
Sbjct: 188  LDSLNAGDVIEGKVARLTNFGAFVDIG-GVDGLVHVSELSHQHVQSPEEVVFVGDKVNVK 246

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            V SVE  ++R+ +++K  D+     ++I      H  D++ G + R+ ++G F+ I    
Sbjct: 247  VKSVEKDTERISLSIK--DTLPTPFAQIK--GQFHENDVIEGTVVRLANFGAFVEIA-PG 301

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS------------ 1415
            + GL H+SE+   H+     +   G++V VKIL +D+E  R+SL +K+            
Sbjct: 302  VQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDVVESDA 361

Query: 1416 ----SYFKNDAD 1423
                SY  NDAD
Sbjct: 362  STTQSYLNNDAD 373



 Score = 68.9 bits (167), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 90/168 (53%), Gaps = 6/168 (3%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            E L  N +++  V  V   G  + + ++    V  S +S  ++E    +F  G+ +  +V
Sbjct: 103  EKLDNNEVIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIEDF-SDFE-GQTIKIKV 158

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
              ++P + RV ++ K  +       + + L +L+ GD++ G++ R+ ++G F+ I   + 
Sbjct: 159  EELDPENNRVILSRKAVEQAENEVKKASLLDSLNAGDVIEGKVARLTNFGAFVDIGGVD- 217

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL HVSELS  HV + E +   G+KV VK+  V+K+  RISL +K +
Sbjct: 218  -GLVHVSELSHQHVQSPEEVVFVGDKVNVKVKSVEKDTERISLSIKDT 264



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 121/261 (46%), Gaps = 26/261 (9%)

Query: 288 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 340
           ++KV  V +G GL++D+      P++ +ST      SD   + ++ K+E+   E + V  
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDFEGQTIKIKVEELDPENNRV-- 168

Query: 341 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
            IL  + +E     + KAS  + L         G V++GKV  + +FGA V   GGV  L
Sbjct: 169 -ILSRKAVEQAENEVKKASLLDSL-------NAGDVIEGKVARLTNFGAFVDI-GGVDGL 219

Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 458
             +  +S   +  P +   VG ++  +V  V+  ++RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHQHVQSPEEVVFVGDKVNVKVKSVEKDTERISLSIKDTLPTPFAQIKGQFHEN 279

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
               +  G + ++   G FV    GVQG    SE+       P  +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGI 336

Query: 519 IPASRRINLSFMMKPTRVSED 539
              + R++LS  +K T  +ED
Sbjct: 337 DEENERVSLS--IKATLPNED 355



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 153/372 (41%), Gaps = 32/372 (8%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I KP +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAY 70

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDSGAYILSKRQLETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDV--G 128

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
            +GF P S +  D   E  S +  GQ +K ++    P + R+ LS   K    +E+++ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQTIKIKVEELDPENNRVILS--RKAVEQAENEVKK 184

Query: 544 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
                    G ++ G V  +T     V +   G   G +    L+   +H    + V+  
Sbjct: 185 ASLLDSLNAGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--QHVQSPEEVVFV 239

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
           G + + ++  ++ ++  + LS K +L     Q+       H N V+ G V  +   G FV
Sbjct: 240 GDKVNVKVKSVEKDTERISLSIKDTLPTPFAQI---KGQFHENDVIEGTVVRLANFGAFV 296

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 711
                + G    S+          +    GQ V   IL ++ E  R++LS+K +  +   
Sbjct: 297 EIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDV 356

Query: 712 -STDASFMQEHF 722
             +DAS  Q + 
Sbjct: 357 VESDASTTQSYL 368


>gi|312869066|ref|ZP_07729240.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
 gi|417885402|ref|ZP_12529556.1| 30S ribosomal protein S1 [Lactobacillus oris F0423]
 gi|311095312|gb|EFQ53582.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
 gi|341595324|gb|EGS37973.1| 30S ribosomal protein S1 [Lactobacillus oris F0423]
          Length = 413

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 91/166 (54%), Gaps = 6/166 (3%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            +L P  +V+G V  +T+ G F+ L   +D  V +S +S  +V+ P      G+ V  +VL
Sbjct: 198  ELQPGDVVEGKVARMTNFGAFVDLG-GVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKVL 256

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            SV+P  +R+ +++K +        E         G  + G +KR+ S+G F+ +    + 
Sbjct: 257  SVDPDRERISLSIKQTLPGPWDDIE----EKAPAGSTLTGTVKRLTSFGAFVEV-FPGVE 311

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            GL H+S++S  H+     + + G++V+VK+L VD E++R+ L MK+
Sbjct: 312  GLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSMKA 357



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 1281 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1340
            V  S ++D YVE    +F  G+ +  +++ +EP   R+ ++ K        Q+     + 
Sbjct: 141  VPASMITDHYVEDL-NQFK-GQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEKIFAE 198

Query: 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
            L  GD+V G++ R+ ++G F+ +   +  GL HVSE+S DHVD    +  AG+ VKVK+L
Sbjct: 199  LQPGDVVEGKVARMTNFGAFVDLGGVD--GLVHVSEISYDHVDKPSDVLSAGQDVKVKVL 256

Query: 1401 KVDKEKRRISLGMKSS 1416
             VD ++ RISL +K +
Sbjct: 257  SVDPDRERISLSIKQT 272



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 6/177 (3%)

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
           I+KA   +      ++++PG VV+GKV  + +FGA V   GGV  L  +  +S   + KP
Sbjct: 183 IVKAEHEQAAEKIFAELQPGDVVEGKVARMTNFGAFVDL-GGVDGLVHVSEISYDHVDKP 241

Query: 415 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
                 G ++  +VL V    +RI+++ K+TL       +   A A   L   G + ++ 
Sbjct: 242 SDVLSAGQDVKVKVLSVDPDRERISLSIKQTL-PGPWDDIEEKAPAGSTLT--GTVKRLT 298

Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             G FV  + GV+G    S++       P+ +   GQ V+ ++++  P  +R+ LS 
Sbjct: 299 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSM 355



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 136/350 (38%), Gaps = 55/350 (15%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 538
           GV+G  P  EL   P  + +    VG  +   ++S I  + + N S+++   R+      
Sbjct: 48  GVEGVVPAKELSTKPVEDINDAVKVGDELDLVVISKI-GNDKENGSYLLSHRRLEARKVW 106

Query: 539 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
           DD+ K    G  ++  V       +VV    +G+   ++ T+H  + L            
Sbjct: 107 DDIQKKFDDGETITAKVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK-------- 158

Query: 596 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 653
           G E +  ++    S N L+ +   ++ +  +  ++   + + P  VV G V  +   G F
Sbjct: 159 GQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEKIFAELQPGDVVEGKVARMTNFGAF 218

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
           V  LG + G    S+         S     GQ V+  +L V+ +  RI+LS+KQ+     
Sbjct: 219 VD-LGGVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSVDPDRERISLSIKQTLPGPW 277

Query: 714 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 773
           D         +EEK                      GS + G V     FG  V  E   
Sbjct: 278 DD--------IEEKAPA-------------------GSTLTGTVKRLTSFGAFV--EVFP 308

Query: 774 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 816
            V G      I+H  +A     ++ G  +Q  +L+V    + + LS+K +
Sbjct: 309 GVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSMKAL 358



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            +  GD+V G+++++ +   G  V +G  + G VH +E+    V  P         D LS 
Sbjct: 199  LQPGDVVEGKVARMTNF--GAFVDLG-GVDGLVHVSEISYDHVDKP--------SDVLSA 247

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
               GQ VK KVL +         + LS++ +L                 PG   + IE+ 
Sbjct: 248  ---GQDVKVKVLSVDPDRE---RISLSIKQTL-----------------PGP-WDDIEEK 283

Query: 1252 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            +P    + G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+
Sbjct: 284  APAGSTLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLN 343

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEIN 1336
            V+P  +R+ +++K  + R   +   N
Sbjct: 344  VDPERQRLGLSMKALEERPKGEDSDN 369



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 147/351 (41%), Gaps = 30/351 (8%)

Query: 371 VKPGMVVKGKVIAVDS-FGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           VK G VVKG+V+A+D    AIV     GV+ + P   +S   +       KVG EL   V
Sbjct: 21  VKVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKVGDELDLVV 80

Query: 429 LGV-----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
           +       ++    ++H++   +     +    +  + +     +T+  K G  V    G
Sbjct: 81  ISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDDGETITAK--VTQAVKGGLVVDA--G 136

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSED 539
           V+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS       +  + +E 
Sbjct: 137 VRGFVPASMI-TDHYVEDLNQFK-GQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEK 194

Query: 540 DLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 596
              +L  G +V G V  +T     V +   G   G +    ++ DH++  +    V+  G
Sbjct: 195 IFAELQPGDVVEGKVARMTNFGAFVDL---GGVDGLVHVSEISYDHVDKPS---DVLSAG 248

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
            +   ++L +D +   + LS K +L      +   A      S + G V  +   G FV 
Sbjct: 249 QDVKVKVLSVDPDRERISLSIKQTLPGPWDDIEEKAP---AGSTLTGTVKRLTSFGAFVE 305

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
               + G    S+      A  +     GQ V+  +L+V+ E  R+ LS+K
Sbjct: 306 VFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSMK 356


>gi|75763037|ref|ZP_00742826.1| SSU ribosomal protein S1P [Bacillus thuringiensis serovar israelensis
            ATCC 35646]
 gi|74489469|gb|EAO52896.1| SSU ribosomal protein S1P [Bacillus thuringiensis serovar israelensis
            ATCC 35646]
          Length = 313

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 6/186 (3%)

Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
             +++   K  E I  L    +V+G V+ +T  G F+ +   +D  V +S +S   VE P 
Sbjct: 102  VELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQPS 160

Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1355
            +    G+ V  +VLSV+  ++R+ +++K +          N    +  GDI  G +KR+ 
Sbjct: 161  EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVAGEIKAGDIREGVVKRLV 216

Query: 1356 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            ++G F+ I    + GL HVS+++  HV N   +   G++VKVK+L+V   ++RISL +K 
Sbjct: 217  TFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKE 275

Query: 1416 SYFKND 1421
            +  +N+
Sbjct: 276  ALEENN 281



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
            GK +A +++ ++    RV ++ K          +   +S+L  GD+V G ++R+  +G F
Sbjct: 77   GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAF 136

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +   +  GL H+S++S + V+    +   G+KVKVK+L VD + +RISL +K++
Sbjct: 137  VNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAA 190



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 115 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 173

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   ++RI+++ K          ++   +A D  I  G + ++   G FV    GV+G
Sbjct: 174 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKAGD--IREGVVKRLVTFGAFVEILPGVEG 230

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 539
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V ED
Sbjct: 231 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEALEENNVIED 285



 Score = 45.1 bits (105), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 126/294 (42%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 58   FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 111

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 112  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 168

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +                     + T    LS     PG    
Sbjct: 169  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 197

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 198  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 257

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K +          SQ E N + +   + DI+  Q+K++
Sbjct: 258  KVLEVHAAEKRISLSIKEALEENNVIEDYSQYEPNADSATFQLSDIIGEQLKKL 311


>gi|357634293|ref|ZP_09132171.1| ribosomal protein S1 [Desulfovibrio sp. FW1012B]
 gi|357582847|gb|EHJ48180.1| ribosomal protein S1 [Desulfovibrio sp. FW1012B]
          Length = 576

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 150/348 (43%), Gaps = 34/348 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G  V G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQTVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQ 266

Query: 434 --KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +++++  K+ +      I   Y E T RL   G +T +  +G FV    GV+G    S
Sbjct: 267 DKQKVSLGMKQLVADPWENIAGKYPEDT-RL--SGKVTNLVDYGAFVELEAGVEGLVHIS 323

Query: 492 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 546
           E+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V      G+
Sbjct: 324 EMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLG--MKQVRPNPWDIVAEKYPEGT 381

Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 600
           ++ G V  +T   + +     G   G     H++D     +  K V  PG  F       
Sbjct: 382 VLEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKSGDTVM 432

Query: 601 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 658
            ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGAMVKGTVTNITDFGLFVEVEE 488

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
            + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 489 GIEGLVHVSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 72.4 bits (176), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 8/162 (4%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1314
            +++G VKN+T  G FI +   +D  + +S++S    V  P + F  G  V  +VL+V+  
Sbjct: 382  VLEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDTVMAKVLTVDKE 441

Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
            +++  + +K       S+     + + + VG +V G +  +  +GLF+ +E   + GL H
Sbjct: 442  NEKFTLGIKQ-----LSEDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEE-GIEGLVH 495

Query: 1374 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            VSE+S   V     +Y+ G++++ K++ V  ++RR+ L +KS
Sbjct: 496  VSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIKS 537



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 9/166 (5%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L     V G VKN+T  G F+ L   LD  + ++++S   ++ P++   +G  +  +VLS
Sbjct: 205  LEEGQTVTGRVKNITEYGVFVDLG-GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI-GQIKRVESYGLFITIENTNLV 1369
             +   ++V + +K      A   E  N++  +  D  + G++  +  YG F+ +E   + 
Sbjct: 264  FDQDKQKVSLGMK---QLVADPWE--NIAGKYPEDTRLSGKVTNLVDYGAFVELE-AGVE 317

Query: 1370 GLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            GL H+SE+S    + +   +   G++V+V +L VD +K+RISLGMK
Sbjct: 318  GLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMK 363



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 6/123 (4%)

Query: 1294 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQI 1351
            P+ +  +G+    RVL +      V V+ +    + R + + ++  L  L  G  V G++
Sbjct: 158  PDMDALVGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL--LKTLEEGQTVTGRV 215

Query: 1352 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
            K +  YG+F+ +    L GL H++++S   + + + +   G+++++K+L  D++K+++SL
Sbjct: 216  KNITEYGVFVDL--GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSL 273

Query: 1412 GMK 1414
            GMK
Sbjct: 274  GMK 276



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 151/389 (38%), Gaps = 79/389 (20%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--- 516
           D +IT   + +I+  G +     GV+ F P S + L P  +  ++  VGQ  + R++   
Sbjct: 121 DDVITGRIVRRIK--GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKIN 176

Query: 517 ---SSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV-------- 562
              S++  SRR+ L       R    DL+K    G  V+G V  +T   V V        
Sbjct: 177 RRRSNVIVSRRVLLEERRDSMR---KDLLKTLEEGQTVTGRVKNITEYGVFVDLGGLDGL 233

Query: 563 -YVIAKGYSKGTIPTE--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 619
            ++    + +   P E  HL D LE                ++L  D +   + L  K  
Sbjct: 234 MHITDMSWKRIKHPKELVHLGDELEL---------------KVLSFDQDKQKVSLGMKQL 278

Query: 620 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLS 678
           + +  + +   A     ++ + G V N+++ G FV     + G    S+    ++    S
Sbjct: 279 VADPWENI---AGKYPEDTRLSGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPS 335

Query: 679 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 738
           +  +VG  V   +L V+ +  RI+L +KQ   +  D        ++ EK           
Sbjct: 336 QMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWD--------IVAEK----------- 376

Query: 739 SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESG 792
                   +  G+V+EG V    +FG+ +  E+      H     +    +  G   +SG
Sbjct: 377 --------YPEGTVLEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSG 428

Query: 793 SVIQAAILDVAKAERLVDLSLKTVFIDRF 821
             + A +L V K      L +K +  D +
Sbjct: 429 DTVMAKVLTVDKENEKFTLGIKQLSEDPW 457



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 168/390 (43%), Gaps = 47/390 (12%)

Query: 64  VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG  +T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQTVTGRVKNITEYG 222

Query: 123 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLS-----S 173
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLGMKQLVA 280

Query: 174 DP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 232
           DP + ++    +D +            +S +V ++++ G  +       G V I  +  T
Sbjct: 281 DPWENIAGKYPEDTR------------LSGKVTNLVDYGAFVELEAGVEGLVHISEMSWT 328

Query: 233 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIY 286
               +     +   +V   +L VDP  + + L +     NP+ ++  + P   V  G + 
Sbjct: 329 RKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTVLEGSVK 388

Query: 287 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF 345
           + ++        G+ + I          + +SD++  ++VR   + +K G  V  ++L  
Sbjct: 389 NITE-------FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKSGDTVMAKVLTV 438

Query: 346 -RHLEGLATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPL 403
            +  E    GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +
Sbjct: 439 DKENEKFTLGIKQLS--EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHV 496

Query: 404 PHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
             +S  ++  P + +K G E+  +V+ V +
Sbjct: 497 SEISRKKVKTPAELYKEGDEIEAKVIHVSA 526



 Score = 44.7 bits (104), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 85/451 (18%), Positives = 174/451 (38%), Gaps = 80/451 (17%)

Query: 563 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 622
           Y +  G  +  +P  H+   L     M +++   +EF ++L ++   SN+++S +  L  
Sbjct: 136 YTVDLGGVEAFLPGSHV--DLRPVPDMDALVGQEFEF-RVLKINRRRSNVIVSRRVLLEE 192

Query: 623 SAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 681
               +  D    +     V G V NI E G FV  LG L G    +     +     +  
Sbjct: 193 RRDSMRKDLLKTLEEGQTVTGRVKNITEYGVFVD-LGGLDGLMHITDMSWKRIKHPKELV 251

Query: 682 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 741
           ++G  +   +L  + +  +++L +KQ                  E IA            
Sbjct: 252 HLGDELELKVLSFDQDKQKVSLGMKQLVADPW------------ENIAG----------- 288

Query: 742 KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGS 793
           K+ E     + + GKV    D+G  V  E  + V G +   +++           V  G 
Sbjct: 289 KYPED----TRLSGKVTNLVDYGAFVELE--AGVEGLVHISEMSWTRKLRHPSQMVHVGD 342

Query: 794 VIQAAILDVAKAERLVDLSLKTV-------FIDRFREANSNRQAQKKKRKREASKDLGVH 846
            ++  +L V   ++ + L +K V         +++ E      + K     E    +G+ 
Sbjct: 343 EVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTVLEGSVKNIT--EFGIFIGIE 400

Query: 847 QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSS 906
             ++ ++ +                   + +S     + P + F +G +V+A V+ +   
Sbjct: 401 DGIDGLIHV-------------------SDISWTKKVRHPGEMFKSGDTVMAKVLTVDKE 441

Query: 907 STAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 966
           +   +  L +K +SE   +     +   +Y VG++V+  +T I    L ++   G  G +
Sbjct: 442 NE--KFTLGIKQLSEDPWT-----RVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLV 494

Query: 967 HITEVNDDKSNVVENLFSNFKIGQTVTARII 997
           H++E++  K      L   +K G  + A++I
Sbjct: 495 HVSEISRKKVKTPAEL---YKEGDEIEAKVI 522


>gi|239908954|ref|YP_002955696.1| 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
 gi|239798821|dbj|BAH77810.1| 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
          Length = 576

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 150/348 (43%), Gaps = 34/348 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G  V G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQTVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQ 266

Query: 434 --KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +++++  K+ +      I   Y E T R+   G +T +  +G FV    GV+G    S
Sbjct: 267 DKQKVSLGMKQLIADPWENIAGKYPEDT-RM--SGKVTNLVDYGAFVELEPGVEGLVHIS 323

Query: 492 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 546
           E+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V      G+
Sbjct: 324 EMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLG--MKQVRPNPWDIVAEKYPEGT 381

Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 600
           ++ G V  +T   + +     G   G     H++D     +  K V  PG  F       
Sbjct: 382 ILEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKSGDIVM 432

Query: 601 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 658
            ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGAMVKGTVTNITDFGLFVEVEE 488

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
            + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 489 GIEGLVHVSEISRKKVKTPAEIYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 63/385 (16%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1094
            GQ VTG V  +  E+ +      L   + I D +++    P EL       H+G  +   
Sbjct: 208  GQTVTGRVKNI-TEYGVFVDLGGLDGLMHITDMSWKRIKHPKEL------VHLGDELELK 260

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VLS +++K+ + L ++     I+D       +N+     E   + G+++ ++    G  V
Sbjct: 261  VLSFDQDKQKVSLGMKQL---IADPW-----ENIAGKYPEDTRMSGKVTNLVDY--GAFV 310

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
            ++ P + G VH +E+           +      P      G  V+  VL +    +    
Sbjct: 311  ELEPGVEGLVHISEMS----------WTRKLRHPSQMVHVGDEVEVVVLSVDPDKK---- 356

Query: 1215 VELSLRSSLDGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
                 R SL GM     N  D+              E      I++G VKN+T  G FI 
Sbjct: 357  -----RISL-GMKQVRPNPWDIVA------------EKYPEGTILEGSVKNITEFGIFIG 398

Query: 1273 LSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
            +   +D  + +S++S    V  P + F  G +V  +VL+V+  +++  + +K       S
Sbjct: 399  IEDGIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVDKENEKFTLGIKQ-----LS 453

Query: 1332 QSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1390
            +     + + + VG +V G +  +  +GLF+ +E   + GL HVSE+S   V     IY+
Sbjct: 454  EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEE-GIEGLVHVSEISRKKVKTPAEIYK 512

Query: 1391 AGEKVKVKILKVDKEKRRISLGMKS 1415
             G++++ K++ V  ++RR+ L +KS
Sbjct: 513  EGDEIEAKVIHVSADERRLGLSIKS 537



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 9/166 (5%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L     V G VKN+T  G F+ L   LD  + ++++S   ++ P++   +G  +  +VLS
Sbjct: 205  LEEGQTVTGRVKNITEYGVFVDLG-GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI-GQIKRVESYGLFITIENTNLV 1369
             +   ++V + +K      A   E  N++  +  D  + G++  +  YG F+ +E   + 
Sbjct: 264  FDQDKQKVSLGMK---QLIADPWE--NIAGKYPEDTRMSGKVTNLVDYGAFVELE-PGVE 317

Query: 1370 GLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            GL H+SE+S    + +   +   G++V+V +L VD +K+RISLGMK
Sbjct: 318  GLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMK 363



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 6/123 (4%)

Query: 1294 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQI 1351
            P+ +  +G+    RVL +      V V+ +    + R + + ++  L  L  G  V G++
Sbjct: 158  PDMDALVGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL--LKTLEEGQTVTGRV 215

Query: 1352 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
            K +  YG+F+ +    L GL H++++S   + + + +   G+++++K+L  D++K+++SL
Sbjct: 216  KNITEYGVFVDL--GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSL 273

Query: 1412 GMK 1414
            GMK
Sbjct: 274  GMK 276



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 141/374 (37%), Gaps = 77/374 (20%)

Query: 475 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 528
           G +     GV+ F P S + L P  +  ++  VGQ  + R++      S++  SRR+ L 
Sbjct: 134 GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKINRRRSNVIVSRRVLLE 191

Query: 529 FMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPT 576
                 R    DL+K    G  V+G V  +T   V V         ++    + +   P 
Sbjct: 192 ERRDSMR---KDLLKTLEEGQTVTGRVKNITEYGVFVDLGGLDGLMHITDMSWKRIKHPK 248

Query: 577 E--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 634
           E  HL D LE                ++L  D +   + L  K  + +  + +   A   
Sbjct: 249 ELVHLGDELEL---------------KVLSFDQDKQKVSLGMKQLIADPWENI---AGKY 290

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILD 693
             ++ + G V N+++ G FV     + G    S+    ++    S+  +VG  V   +L 
Sbjct: 291 PEDTRMSGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLS 350

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  RI+L +KQ   +  D                              E +  G+++
Sbjct: 351 VDPDKKRISLGMKQVRPNPWDIV---------------------------AEKYPEGTIL 383

Query: 754 EGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 807
           EG V    +FG+ +  E+      H     +    +  G   +SG ++ A +L V K   
Sbjct: 384 EGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVDKENE 443

Query: 808 LVDLSLKTVFIDRF 821
              L +K +  D +
Sbjct: 444 KFTLGIKQLSEDPW 457



 Score = 48.1 bits (113), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 168/390 (43%), Gaps = 47/390 (12%)

Query: 64  VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG  +T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQTVTGRVKNITEYG 222

Query: 123 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLS-----S 173
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLGMKQLIA 280

Query: 174 DP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 232
           DP + ++    +D +            +S +V ++++ G  +       G V I  +  T
Sbjct: 281 DPWENIAGKYPEDTR------------MSGKVTNLVDYGAFVELEPGVEGLVHISEMSWT 328

Query: 233 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIY 286
               +     +   +V   +L VDP  + + L +     NP+ ++  + P   +  G + 
Sbjct: 329 RKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTILEGSVK 388

Query: 287 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF 345
           + ++        G+ + I          + +SD++  ++VR   + +K G  V  ++L  
Sbjct: 389 NITE-------FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTV 438

Query: 346 -RHLEGLATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPL 403
            +  E    GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +
Sbjct: 439 DKENEKFTLGIKQLS--EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHV 496

Query: 404 PHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
             +S  ++  P + +K G E+  +V+ V +
Sbjct: 497 SEISRKKVKTPAEIYKEGDEIEAKVIHVSA 526


>gi|423454947|ref|ZP_17431800.1| ribosomal protein S1 [Bacillus cereus BAG5X1-1]
 gi|423472523|ref|ZP_17449266.1| ribosomal protein S1 [Bacillus cereus BAG6O-2]
 gi|401135226|gb|EJQ42829.1| ribosomal protein S1 [Bacillus cereus BAG5X1-1]
 gi|402428055|gb|EJV60153.1| ribosomal protein S1 [Bacillus cereus BAG6O-2]
          Length = 382

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 177/394 (44%), Gaps = 64/394 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENN 350



 Score = 44.3 bits (103), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 127/294 (43%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|296272028|ref|YP_003654659.1| RNA binding S1 domain-containing protein [Arcobacter nitrofigilis DSM
            7299]
 gi|296096203|gb|ADG92153.1| RNA binding S1 domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 550

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 210/481 (43%), Gaps = 78/481 (16%)

Query: 940  SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA- 998
            S+V   I EI    + +  G    GR+HI+E+              +K+G T+   +   
Sbjct: 29   SVVDGVIVEISGENVSVDVGQKVEGRLHISEITIGGE-------VKYKVGDTIPVILTGI 81

Query: 999  KSNKPDMK-KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDN--EWAL 1055
            +  KP +  K  L +      +   +E    +  E   +SI  R  G++ + DN  E+ +
Sbjct: 82   RGEKPSISHKKVLQKEKFDAFVKEHTEDLEDVTIEGKIISIKPR-GGFIIEDDNGCEYFM 140

Query: 1056 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1115
                 +LKAQ                     +GK V   VL IN+ +  + +  +     
Sbjct: 141  PMAQSYLKAQ-------------------GALGKKVKAKVLKINEAQNSIIVSRKKL--- 178

Query: 1116 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1175
            I +  ++  +  +  F+    ++ G I KI S   G+ V +G  + G V++ E+      
Sbjct: 179  IEESKIE-KDAKVAQFLENDGLINGTIKKITSY--GMFVDLGG-IDGLVNYNEISY---- 230

Query: 1176 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1235
                   +G  +P + Y EG  V  KVL   +  +   H+ LS++++L            
Sbjct: 231  -------KGPVNPSNYYAEGDEVTVKVLSYDKAKQ---HLSLSVKAALS----------- 269

Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESP 1294
                 P + +    D+   + V   + N  S G F+ L   ++  + +S +S +  +++P
Sbjct: 270  ----NPWEEIRDELDVGDTITVT--ISNFESYGAFVNLGNDIEGLLHISEISWNKNLKNP 323

Query: 1295 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKR 1353
            +    +G  V   V+ ++   KR+ V+LK    +  ++      +  H VGDIV G++  
Sbjct: 324  KDLLTLGDEVNVEVIELDVDKKRLRVSLKNLQEKPFAK-----FTKEHKVGDIVTGKVAT 378

Query: 1354 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
            +  +G F+T+ + +  GL H  E S +     + +Y+ G++++VKI+K+DKEK  ISL +
Sbjct: 379  LTEFGAFVTLGDVD--GLLHNEEASWEGNAKCKNLYKKGDELEVKIIKIDKEKENISLSI 436

Query: 1414 K 1414
            K
Sbjct: 437  K 437



 Score = 74.3 bits (181), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 117/516 (22%), Positives = 212/516 (41%), Gaps = 73/516 (14%)

Query: 329 EKKYKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 386
           E KYK G  + V + G R  +   +   +L+   F+  V  H++    + ++GK+I++  
Sbjct: 65  EVKYKVGDTIPVILTGIRGEKPSISHKKVLQKEKFDAFVKEHTEDLEDVTIEGKIISIKP 124

Query: 387 FGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKT 443
            G  I++   G +   P+           GKK K       +VL +   +  I V+ KK 
Sbjct: 125 RGGFIIEDDNGCEYFMPMAQSYLKAQGALGKKVKA------KVLKINEAQNSIIVSRKKL 178

Query: 444 LVKSKLAILSSYAE--ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 501
           + +SK+   +  A+    D LI +G I KI  +G FV    G+ G    +E+       P
Sbjct: 179 IEESKIEKDAKVAQFLENDGLI-NGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVNP 236

Query: 502 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLGSLVSGVVDVVTPNA 559
           S+ Y  G  V  +++S   A + ++LS     +   E+  D + +G  ++  V +    +
Sbjct: 237 SNYYAEGDEVTVKVLSYDKAKQHLSLSVKAALSNPWEEIRDELDVGDTIT--VTISNFES 294

Query: 560 VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNESSNL 612
              +V      +G +       H+   +  K++  P      G E + +++ LD +   L
Sbjct: 295 YGAFVNLGNDIEGLL-------HISEISWNKNLKNPKDLLTLGDEVNVEVIELDVDKKRL 347

Query: 613 LLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 670
            +S K     + Q+ P +  +  H    +V G V  + E G FV  LG + G     +A 
Sbjct: 348 RVSLK-----NLQEKPFAKFTKEHKVGDIVTGKVATLTEFGAFVT-LGDVDGLLHNEEAS 401

Query: 671 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 730
               A     Y  G  +   I+ ++ E   I+LS+K     S    F   H         
Sbjct: 402 WEGNAKCKNLYKKGDELEVKIIKIDKEKENISLSIK-DITDSPAKKFQATHK-------- 452

Query: 731 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT-- 788
                             IG +++G + +  DFG+ +  E++ D  G + +   A  T  
Sbjct: 453 ------------------IGDIVKGTIKDLKDFGLFIKLEDNLD--GLVRNEDFAPTTAD 492

Query: 789 -VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
            +E G  I+A ++++      V LS+K +   + RE
Sbjct: 493 NIEIGKEIEAVVVNIDTNRNRVRLSIKRLEQQQERE 528



 Score = 49.3 bits (116), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            +H E +ED++    ++G + ++  +G FI+     +       ++  Y+++   +  +GK
Sbjct: 105  EHTEDLEDVT----IEGKIISIKPRGGFIIEDD--NGCEYFMPMAQSYLKA---QGALGK 155

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             V  +VL +      + V+ K     +  + +      L    ++ G IK++ SYG+F+ 
Sbjct: 156  KVKAKVLKINEAQNSIIVSRKKLIEESKIEKDAKVAQFLENDGLINGTIKKITSYGMFVD 215

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +   +  GL + +E+S     N    Y  G++V VK+L  DK K+ +SL +K++
Sbjct: 216  LGGID--GLVNYNEISYKGPVNPSNYYAEGDEVTVKVLSYDKAKQHLSLSVKAA 267



 Score = 47.4 bits (111), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 14/161 (8%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--FPIGKLVAGRVLSVEP 1313
            IV G V  +T  G F+ L    D   LL N    +  + + +  +  G  +  +++ ++ 
Sbjct: 371  IVTGKVATLTEFGAFVTLG---DVDGLLHNEEASWEGNAKCKNLYKKGDELEVKIIKIDK 427

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
              + + +++K      A + +  +     +GDIV G IK ++ +GLFI +E+ NL GL  
Sbjct: 428  EKENISLSIKDITDSPAKKFQATH----KIGDIVKGTIKDLKDFGLFIKLED-NLDGLVR 482

Query: 1374 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              + +    DNIE     G++++  ++ +D  + R+ L +K
Sbjct: 483  NEDFAPTTADNIEI----GKEIEAVVVNIDTNRNRVRLSIK 519



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 89/439 (20%), Positives = 179/439 (40%), Gaps = 82/439 (18%)

Query: 405 HMSEFEIVKPGK-KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL-AILSSYAEATDRL 462
           H+SE  I   G+ K+KVG  +   + G++ ++ +++HKK L K K  A +  + E  + +
Sbjct: 56  HISEITI--GGEVKYKVGDTIPVILTGIRGEKPSISHKKVLQKEKFDAFVKEHTEDLEDV 113

Query: 463 ITHGWITKIEKHGCF-VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----- 516
              G I  I+  G F +   NG + F P ++  L       +   +G+ VK +++     
Sbjct: 114 TIEGKIISIKPRGGFIIEDDNGCEYFMPMAQSYL------KAQGALGKKVKAKVLKINEA 167

Query: 517 -SSIPASRR--INLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 573
            +SI  SR+  I  S + K  +V++   ++   L++G +  +T   + V +   G   G 
Sbjct: 168 QNSIIVSRKKLIEESKIEKDAKVAQ--FLENDGLINGTIKKITSYGMFVDL---GGIDGL 222

Query: 574 IPTEHLADHLEHATVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQ 626
           +    ++         K  + P   + +       +L  D    +L LS K +L N  ++
Sbjct: 223 VNYNEIS--------YKGPVNPSNYYAEGDEVTVKVLSYDKAKQHLSLSVKAALSNPWEE 274

Query: 627 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQ 685
           +  +   +     +   + N    G FV     + G    S+ + +    +      +G 
Sbjct: 275 IRDE---LDVGDTITVTISNFESYGAFVNLGNDIEGLLHISEISWNKNLKNPKDLLTLGD 331

Query: 686 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 745
            V   +++++ +  R+ +SLK +      A F +EH                        
Sbjct: 332 EVNVEVIELDVDKKRLRVSLK-NLQEKPFAKFTKEHK----------------------- 367

Query: 746 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG--------ATVESGSVIQA 797
              +G ++ GKV    +FG  V+     DV G + H++ A            + G  ++ 
Sbjct: 368 ---VGDIVTGKVATLTEFGAFVTL---GDVDGLL-HNEEASWEGNAKCKNLYKKGDELEV 420

Query: 798 AILDVAKAERLVDLSLKTV 816
            I+ + K +  + LS+K +
Sbjct: 421 KIIKIDKEKENISLSIKDI 439


>gi|156348524|ref|XP_001621880.1| hypothetical protein NEMVEDRAFT_v1g143336 [Nematostella vectensis]
 gi|156208203|gb|EDO29780.1| predicted protein [Nematostella vectensis]
          Length = 135

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 10/129 (7%)

Query: 376 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA--------ELVFR 427
           +++G +I ++ FG +V     +K L    H+++  +  P KK   G             +
Sbjct: 7   ILQGTIITLEKFGMLVSVSDHIKGLVTNMHLADIILKHPEKKLTEGKVVNKRLINPFTLQ 66

Query: 428 VLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
           VL V    +R+ +THKKT+V S L +++ Y++A     +HG+IT + ++GC V FYN V+
Sbjct: 67  VLTVDPGQRRLHLTHKKTMVSSILQVITQYSDAKPGTTSHGFITSVREYGCLVTFYNNVK 126

Query: 486 GFAPRSELG 494
           G  P+ +LG
Sbjct: 127 GLVPKDQLG 135



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 13/108 (12%)

Query: 571 KGTIPTEHLADHL---------EHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 620
           KG +   HLAD +         E   V K +I P   F  Q+L +D     L L+ K ++
Sbjct: 29  KGLVTNMHLADIILKHPEKKLTEGKVVNKRLINP---FTLQVLTVDPGQRRLHLTHKKTM 85

Query: 621 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
           ++S  Q+ +  S   P +  HG++ ++ E GC V F   + G  P+ +
Sbjct: 86  VSSILQVITQYSDAKPGTTSHGFITSVREYGCLVTFYNNVKGLVPKDQ 133


>gi|302546255|ref|ZP_07298597.1| ribosomal protein S1 [Streptomyces hygroscopicus ATCC 53653]
 gi|302463873|gb|EFL26966.1| ribosomal protein S1 [Streptomyces himastatinicus ATCC 53653]
          Length = 502

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|384208505|ref|YP_005594225.1| 30S ribosomal protein S1 [Brachyspira intermedia PWS/A]
 gi|343386155|gb|AEM21645.1| 30S ribosomal protein S1 [Brachyspira intermedia PWS/A]
          Length = 568

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 148/339 (43%), Gaps = 17/339 (5%)

Query: 376 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSK 434
           ++ GKV  ++ FGA V+   G      +P+MS  +++ P      G E +F+VL + K  
Sbjct: 208 IINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFKVLHIDKEN 267

Query: 435 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 494
           R      K L +             D  +  G +T ++K G FV+  +G++G    S+L 
Sbjct: 268 RKVDLGIKQLDEDPWGKFVEQYHIDD--VIQGEVTNVKKFGAFVKVADGIEGLVHVSDLS 325

Query: 495 LDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSG 550
            +     P+     G  ++C+I+    A R++ L        P    E D   + S V  
Sbjct: 326 WNSHVNNPNDFVKKGAFLECKILDMNAAERKLTLGLKQVKENPWDTVEKDF-PVKSAVKC 384

Query: 551 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDNES 609
            V  +  N   V+ +  G  +G        D   +   MK  +K G E + +++ +D + 
Sbjct: 385 KVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVNMKDYVKEGEEVNMVIMSIDRDK 441

Query: 610 SNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668
             + LS K++  +S  +L   A   HP  S+V G V  I+++G  +     L G+   S+
Sbjct: 442 QRIKLSYKHTK-DSPWRLFEKA---HPQGSIVDGTVKAIVDSGAIISLEDDLEGYMHVSQ 497

Query: 669 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
               + + L +   VG++    + +VN    RI+LS ++
Sbjct: 498 VEIPKGSTLEEVLKVGETYPFVVREVNQSKRRISLSRRE 536



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 92/168 (54%), Gaps = 6/168 (3%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            + +L  N I+ G VKN+   G F+ ++   D  + + N+S   V +P+     G+    +
Sbjct: 200  LNNLQENDIINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFK 259

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            VL ++  +++V++ +K  D     +     +   H+ D++ G++  V+ +G F+ + +  
Sbjct: 260  VLHIDKENRKVDLGIKQLDEDPWGKF----VEQYHIDDVIQGEVTNVKKFGAFVKVAD-G 314

Query: 1368 LVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 315  IEGLVHVSDLSWNSHVNNPNDFVKKGAFLECKILDMNAAERKLTLGLK 362



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 138/300 (46%), Gaps = 49/300 (16%)

Query: 1125 NDNMQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            N  ++TF++   E DI+ G++  I     G  V+I P   G   F  + N+     ++  
Sbjct: 193  NAGIETFLNNLQENDIINGKVKNIEKF--GAFVEITPGFDG---FLAIPNMSWDKVIN-- 245

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
                  P S   +G+    KVL I +  R    V+L ++                D D  
Sbjct: 246  ------PKSIISKGEERMFKVLHIDKENR---KVDLGIKQ--------------LDEDPW 282

Query: 1242 GKHLEK--IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEF 1298
            GK +E+  I+D     ++QG V NV   G F+ ++  ++  V +S+LS + +V +P    
Sbjct: 283  GKFVEQYHIDD-----VIQGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPNDFV 337

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESY 1357
              G  +  ++L +    +++ + LK          E     +  V   V  ++KR+ +++
Sbjct: 338  KKGAFLECKILDMNAAERKLTLGLKQVKENPWDTVE----KDFPVKSAVKCKVKRIIKNF 393

Query: 1358 GLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             +F  + N  L G+C +S+    +++ N++   + GE+V + I+ +D++K+RI L  K +
Sbjct: 394  AVF-ELPN-GLEGICDISDFDWRNNIVNMKDYVKEGEEVNMVIMSIDRDKQRIKLSYKHT 451



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 116/575 (20%), Positives = 217/575 (37%), Gaps = 88/575 (15%)

Query: 437 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITK-----IEKHGCFVRFYNGVQGFAPRS 491
           T+   K L   ++    +  E+ +  ++ G I K      +    F+ F +  +G   RS
Sbjct: 9   TMEDNKNLSNDEIEFRKALEESDNTFLSRGKIVKGKVVQFDDTDVFIDFDSKSEGKIKRS 68

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---DDLVKLGSLV 548
           E   +P         +G+ ++  I+S       + LS      R S+   D+ VK  + +
Sbjct: 69  EFDKEP--------TIGEEIEA-IVSGEDDKGYVILSKSEIDKRKSQELIDNAVKNNTAI 119

Query: 549 SGVV-DVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFDQLLVL 605
           +GVV +VV  ++ V      G+    +  +       ++ A  +K     G EF +  V+
Sbjct: 120 TGVVKEVVRSDSKVA-----GFKVSIMGHQAFCPFSQIDLAKGIKESDYIGKEF-EFRVI 173

Query: 606 DNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
                ++++S +  L+   Q   + +  +++  N +++G V NI + G FV       GF
Sbjct: 174 KKNGRDVVVSRRV-LLEETQNAGIETFLNNLQENDIINGKVKNIEKFGAFVEITPGFDGF 232

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 723
                    +  +       G+     +L ++ E  ++ L +KQ               L
Sbjct: 233 LAIPNMSWDKVINPKSIISKGEERMFKVLHIDKENRKVDLGIKQ---------------L 277

Query: 724 LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYG 777
            E+               K+VE + I  VI+G+V     FG  V   +      H     
Sbjct: 278 DEDPWG------------KFVEQYHIDDVIQGEVTNVKKFGAFVKVADGIEGLVHVSDLS 325

Query: 778 FITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 837
           + +H       V+ G+ ++  ILD+  AER + L LK V               K+    
Sbjct: 326 WNSHVNNPNDFVKKGAFLECKILDMNAAERKLTLGLKQV---------------KENPWD 370

Query: 838 EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN-GQSV 896
              KD  V   V   V+ + +N+ V  LP     I   S  D+       K ++  G+ V
Sbjct: 371 TVEKDFPVKSAVKCKVKRIIKNFAVFELPNGLEGICDISDFDWRNNIVNMKDYVKEGEEV 430

Query: 897 IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL 956
              +M++       +L       S   T  S     + ++  GS+V   +  I      +
Sbjct: 431 NMVIMSIDRDKQRIKL-------SYKHTKDSPWRLFEKAHPQGSIVDGTVKAIVDSGAII 483

Query: 957 KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 991
                  G +H+++V   K + +E +    K+G+T
Sbjct: 484 SLEDDLEGYMHVSQVEIPKGSTLEEV---LKVGET 515



 Score = 45.1 bits (105), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 142/357 (39%), Gaps = 54/357 (15%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +VKGKV+  D     + F    +        SEF+     K+  +G E+   V G   
Sbjct: 38  GKIVKGKVVQFDDTDVFIDFDSKSEGKI---KRSEFD-----KEPTIGEEIEAIVSGEDD 89

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN----GVQGFAP 489
           K   +  K  + K K   L   A   +  IT G + ++ +    V  +     G Q F P
Sbjct: 90  KGYVILSKSEIDKRKSQELIDNAVKNNTAIT-GVVKEVVRSDSKVAGFKVSIMGHQAFCP 148

Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLG 545
            S++ L  G + S   ++G+  + R++      +  SRR+ L         +  + ++  
Sbjct: 149 FSQIDLAKGIKESD--YIGKEFEFRVIKKNGRDVVVSRRVLLEETQNAGIETFLNNLQEN 206

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLV 604
            +++G V  +      V  I  G+  G +   +++   +     KS+I  G E   ++L 
Sbjct: 207 DIINGKVKNIEKFGAFVE-ITPGFD-GFLAIPNMS--WDKVINPKSIISKGEERMFKVLH 262

Query: 605 LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           +D E+  + L  K        QL  D         H + V+ G V N+ + G FV+    
Sbjct: 263 IDKENRKVDLGIK--------QLDEDPWGKFVEQYHIDDVIQGEVTNVKKFGAFVKVADG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 707
           + G    S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 315 IEGLVHVS--------DLSWNSHVNNPNDFVKKGAFLECKILDMNAAERKLTLGLKQ 363


>gi|345014360|ref|YP_004816714.1| RNA binding S1 domain-containing protein [Streptomyces violaceusniger
            Tu 4113]
 gi|344040709|gb|AEM86434.1| RNA binding S1 domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 504

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 187/416 (44%), Gaps = 66/416 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-G 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANEAFGAD 375



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|163939412|ref|YP_001644296.1| 30S ribosomal protein S1 [Bacillus weihenstephanensis KBAB4]
 gi|229132404|ref|ZP_04261258.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
 gi|423366663|ref|ZP_17344096.1| ribosomal protein S1 [Bacillus cereus VD142]
 gi|423524601|ref|ZP_17501074.1| ribosomal protein S1 [Bacillus cereus HuA4-10]
 gi|423667281|ref|ZP_17642310.1| ribosomal protein S1 [Bacillus cereus VDM034]
 gi|163861609|gb|ABY42668.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4]
 gi|228651110|gb|EEL07091.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
 gi|401087142|gb|EJP95351.1| ribosomal protein S1 [Bacillus cereus VD142]
 gi|401170444|gb|EJQ77685.1| ribosomal protein S1 [Bacillus cereus HuA4-10]
 gi|401304032|gb|EJS09590.1| ribosomal protein S1 [Bacillus cereus VDM034]
          Length = 382

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 44.3 bits (103), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|325971203|ref|YP_004247394.1| RNA binding S1 domain-containing protein [Sphaerochaeta globus str.
            Buddy]
 gi|324026441|gb|ADY13200.1| RNA binding S1 domain protein [Sphaerochaeta globus str. Buddy]
          Length = 571

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 171/379 (45%), Gaps = 58/379 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
            GQ V G V +V+NE+  + +    + ++             EF     +G+ V   V+ I
Sbjct: 32   GQLVAGTVVQVNNEYVFVDVGYKSEGRI----------SRDEFASIPEVGEEV--KVVII 79

Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
            NKE K  ++V+   +    ++T     D ++        + G+  K++ G  G  V +G 
Sbjct: 80   NKEGKGGQIVVSKKRADFKERT-----DELKAASENRSPILGKFEKVIKG--GFEVDLGG 132

Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
               G    ++   + V +P +      +  +  +  G  +K  V               +
Sbjct: 133  EYKGFCPLSKADVVRVEEPETLIGVTDYFIIDKFHGGTKLKSVV---------------N 177

Query: 1219 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
             R  LD     N     + V        +I D     +V+G VK+ TS G FI L    D
Sbjct: 178  RREYLDQKIKENKEKFFSTV--------QIGD-----VVEGVVKSFTSFGAFIDLG-GFD 223

Query: 1279 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEIN 1336
              + ++++S G+V  P+     G++V  R+++++P ++++ ++LK    D  T  + + N
Sbjct: 224  GLLHINDMSWGHVTRPKDFVKKGQVVQLRLINIDPETQKINLSLKHMQEDPWTTFEQKYN 283

Query: 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKV 1395
                  VGD +   + ++ ++G FI IE   + GL H+SELS    V+N + +   G+ V
Sbjct: 284  ------VGDTIKAPVTKITTFGAFIEIE-PGIEGLAHISELSWTKRVNNPKEVLDVGDVV 336

Query: 1396 KVKILKVDKEKRRISLGMK 1414
            + K+L  D +K+R+SLG+K
Sbjct: 337  EAKVLGYDLDKKRVSLGLK 355



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 150/358 (41%), Gaps = 29/358 (8%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S V+ G VV+G V +  SFGA +   GG   L  +  MS   + +P    K G  +  R+
Sbjct: 195 STVQIGDVVEGVVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQVVQLRL 253

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           + +  ++++I ++ K  + +             D +     +TKI   G F+    G++G
Sbjct: 254 INIDPETQKINLSLKH-MQEDPWTTFEQKYNVGDTI--KAPVTKITTFGAFIEIEPGIEG 310

Query: 487 FAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 542
            A  SEL        P  +  VG VV+ +++      +R++L        P     D   
Sbjct: 311 LAHISELSWTKRVNNPKEVLDVGDVVEAKVLGYDLDKKRVSLGLKQLEENPWDTIVDRYP 370

Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 602
              +L   VV +    A V         +G     H+ D +     +K++     E D +
Sbjct: 371 VGMTLSKPVVKITNSGAFV------NLEEGIDGFLHI-DDISWTKKVKNMASFCAEGDVI 423

Query: 603 LVLDN----ESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFL 657
            V+      E+  + L  K    N  Q L     H +P  S + G + N+ + G FV+ +
Sbjct: 424 EVVVIRVEPENRRIRLGVKQLEGNPWQTL----RHDYPKFSTISGVITNVTDFGVFVKVI 479

Query: 658 GRLTGFAPRSKAV--DGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           G + G   +   V  D +  D + K + VG+ + + +++ N  T +++LS+K+    S
Sbjct: 480 GDIEGLISKYNLVGPDEEYTDEILKKFVVGEPITAMVVECNPTTQKLSLSVKEMVKRS 537


>gi|423676686|ref|ZP_17651625.1| ribosomal protein S1 [Bacillus cereus VDM062]
 gi|401307807|gb|EJS13232.1| ribosomal protein S1 [Bacillus cereus VDM062]
          Length = 382

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNTDSA 365



 Score = 44.3 bits (103), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 130/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEINNLS-NLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N  S    + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNTDSATFQLSDIIGEQLKKL 380


>gi|50954808|ref|YP_062096.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951290|gb|AAT88991.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 480

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 181/412 (43%), Gaps = 66/412 (16%)

Query: 1017 PSMLTVSEIGSKLLFEECD------VSIGQRVTGYVYKVDNEWALLTISRH----LKAQL 1066
            P  + V++IGS   F           + G  + G V K+D +  LL +       + ++ 
Sbjct: 10   PKQVAVNDIGSAEDFLAAVEKTLKFFNDGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRE 69

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
              +    +PSE+        +G  V   VL   KE K  RL+L   +        D+   
Sbjct: 70   LSIKHDIDPSEV------VDVGDTVEALVL--QKEDKEGRLILSKKRAQYERAWGDVEK- 120

Query: 1127 NMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1185
                 I + D +V G + +++ G  GL+V IG   +      EL+ +    P  G     
Sbjct: 121  -----IKDADGVVTGTVIEVVKG--GLIVDIGLRGFLPASLIELRRVRDLTPYLG----- 168

Query: 1186 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1245
                      Q ++ K+LE+ +      +V LS R+ L+   S + +             
Sbjct: 169  ----------QEIEAKILELDKNRN---NVVLSRRALLEQTQSESRTTF----------- 204

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
              + +L    + +G V ++ + G F+ L   +D  V +S LS  ++E   +   +G+ V 
Sbjct: 205  --LNNLYKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIEHASEVVEVGQEVT 261

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1364
              +L V+   +RV ++LK +      +      +  H +G +  G++ ++  +G F+ + 
Sbjct: 262  VEILEVDLDRERVSLSLKAT-----QEDPWQVFARTHAIGQVAPGKVTKLVPFGAFVRVA 316

Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  + GL H+SELS  HV+  E +   GE+V VK++ +D E+RRISL +K +
Sbjct: 317  D-GIEGLVHISELSGKHVELAEQVVSVGEEVFVKVIDIDLERRRISLSLKQA 367



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 148/362 (40%), Gaps = 40/362 (11%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  +  G + KI++    +      +G  P  EL +    +PS +  VG  V+  ++   
Sbjct: 37  DGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDIDPSEVVDVGDTVEALVLQKE 96

Query: 520 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS        +  D+ K+     +V+G V  V    ++V +  +G+    +P 
Sbjct: 97  DKEGRLILSKKRAQYERAWGDVEKIKDADGVVTGTVIEVVKGGLIVDIGLRGF----LP- 151

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SH 633
              A  +E   V       G E + ++L LD   +N++LS + +L+   Q        ++
Sbjct: 152 ---ASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLS-RRALLEQTQSESRTTFLNN 207

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           ++   V  G V +I+  G FV  LG + G    S+         S+   VGQ V   IL+
Sbjct: 208 LYKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILE 266

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI-IGSV 752
           V+ +  R++LSLK +        F + H       A+ Q +    ++L     F+ +   
Sbjct: 267 VDLDRERVSLSLKATQEDPWQV-FARTH-------AIGQVAPGKVTKLVPFGAFVRVADG 318

Query: 753 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
           IEG VH S   G                H +LA   V  G  +   ++D+    R + LS
Sbjct: 319 IEGLVHISELSG---------------KHVELAEQVVSVGEEVFVKVIDIDLERRRISLS 363

Query: 813 LK 814
           LK
Sbjct: 364 LK 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 156/349 (44%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +++G V+ +D    ++      + + P   +S    + P +   VG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDIDPSEVVDVGDTVEALVLQKED 97

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +A D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVEKIKDA-DGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R +  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRTTFLNNLY 209

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    V  G V  ++  G FVR    +
Sbjct: 264 ILEVDLDRERVSLSLKATQEDPWQVF----ARTHAIGQVAPGKVTKLVPFGAFVRVADGI 319

Query: 661 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+ + G+  +L+ +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGEEVFVKVIDIDLERRRISLSLKQA 367


>gi|331269557|ref|YP_004396049.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/ribosomal protein
            S1-like protein [Clostridium botulinum BKT015925]
 gi|329126107|gb|AEB76052.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
            protein S1-like protein [Clostridium botulinum BKT015925]
          Length = 634

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 197/430 (45%), Gaps = 63/430 (14%)

Query: 996  IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE---CDVSIGQRVTGYVYKVDNE 1052
            + A ++ PD     + E  +K S  T SE+  +L + E     V+IG  V G +  ++ +
Sbjct: 258  VTAGASTPDW---IIKEAILKMSEHTNSELNEQLAYMEQNDIQVAIGDTVKGQIISLNEK 314

Query: 1053 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
             A + I  + K  +  L  A    ++   +  F++G  V   V+S+      +  VL   
Sbjct: 315  EAFVNIG-YKKDGIIPLKEATRDEDVL-IKDLFNVGDEVEAKVISLKNSDDCI--VLSKI 370

Query: 1113 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1172
            +    +   +I N     F ++G+I    IS   S  GG++        GR      K +
Sbjct: 371  EIEREEAFKEIEN----AFNNKGEIT---ISIKESVNGGII--------GR-----YKGV 410

Query: 1173 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV----ELSLRSSLDGMSS 1228
             V  P S  +    D LS Y  GQ ++ K++E     +GT  V    EL +++       
Sbjct: 411  RVFVPASHVELFHVDDLSTYI-GQDMQVKIIEFKVNRKGTKIVASRRELLVKAQAQKKEG 469

Query: 1229 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1288
              +S                  L  + +V+G ++ +TS G F+ ++  +D  + +S +S 
Sbjct: 470  AWNS------------------LEKDQVVEGEIRRLTSFGAFVDVN-GIDGLLHVSEISW 510

Query: 1289 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDI 1346
            G VE PE    IG+ V   +L ++  +K++ +++K  T D  T  + +        +G I
Sbjct: 511  GRVEKPEDVLKIGEKVKVCILDIDKENKKLSLSIKKLTEDPWTNIEEK------YPIGSI 564

Query: 1347 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1406
            V+G++ R   +G F+ +E   + GL HVSE+S   ++    + +  E+VK KIL V+K+ 
Sbjct: 565  VLGKVVRFADFGAFVQLE-PGVDGLVHVSEISYKRINKPSDVLKVDEEVKAKILSVNKDG 623

Query: 1407 RRISLGMKSS 1416
            +R+SL +K +
Sbjct: 624  KRLSLSIKEA 633



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 16/205 (7%)

Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG--------MVVKGKVIAVDS 386
           G  ++V+I+ F+ +    T I+ AS  E LV   +  K G         VV+G++  + S
Sbjct: 432 GQDMQVKIIEFK-VNRKGTKIV-ASRRELLVKAQAQKKEGAWNSLEKDQVVEGEIRRLTS 489

Query: 387 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 444
           FGA V    G+  L  +  +S   + KP    K+G ++   +L +  ++K+++++ KK  
Sbjct: 490 FGAFVDV-NGIDGLLHVSEISWGRVEKPEDVLKIGEKVKVCILDIDKENKKLSLSIKKLT 548

Query: 445 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 504
                 I   Y   +   I  G + +    G FV+   GV G    SE+      +PS +
Sbjct: 549 EDPWTNIEEKYPIGS---IVLGKVVRFADFGAFVQLEPGVDGLVHVSEISYKRINKPSDV 605

Query: 505 YHVGQVVKCRIMSSIPASRRINLSF 529
             V + VK +I+S     +R++LS 
Sbjct: 606 LKVDEEVKAKILSVNKDGKRLSLSI 630


>gi|296125740|ref|YP_003632992.1| RNA binding S1 domain-containing protein [Brachyspira murdochii DSM
           12563]
 gi|296017556|gb|ADG70793.1| RNA binding S1 domain protein [Brachyspira murdochii DSM 12563]
          Length = 554

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 155/347 (44%), Gaps = 19/347 (5%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           +++K   ++ GKV  ++ FGA ++   G      +P+MS  +++ P      G E +F+V
Sbjct: 187 NNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFKV 246

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L +  ++K++ +  K+         +  Y       +  G +T ++K G FV+  +G++G
Sbjct: 247 LHIDKENKKVDLGIKQLDEDPWGKFVEQYHIGD---VIQGEVTNVKKFGAFVKVADGIEG 303

Query: 487 FAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 542
               S+L  +     PS     G  ++C+I+    A R++ L        P    E D  
Sbjct: 304 LVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQVKENPWDTVEKDF- 362

Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 602
            + S V   V  +  N   V+ +  G  +G        D   +   MK  IK G + + +
Sbjct: 363 PVKSAVKCKVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVNMKDYIKEGEDVNMV 419

Query: 603 LV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRL 660
           ++ +D +   + LS K++   S  +L   A   HP  S+V G V  I+++G  V     L
Sbjct: 420 IMSIDRDKQRIKLSYKHTK-ESPWRLFEKA---HPQGSIVDGTVKAIVDSGAIVALEDDL 475

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            G+   S+    + + L +   VG++    + +VN    RI+LS ++
Sbjct: 476 EGYMHVSQVEIPKGSTLEEVVKVGETYPFVVREVNQSKRRISLSRRE 522



 Score = 76.3 bits (186), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 93/168 (55%), Gaps = 6/168 (3%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            + +L  N I+ G VKN+   G FI ++   D  + + N+S   V +P+     G+    +
Sbjct: 186  LNNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFK 245

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            VL ++  +K+V++ +K  D     +     +   H+GD++ G++  V+ +G F+ + +  
Sbjct: 246  VLHIDKENKKVDLGIKQLDEDPWGKF----VEQYHIGDVIQGEVTNVKKFGAFVKVAD-G 300

Query: 1368 LVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  IEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLK 348



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 110/540 (20%), Positives = 203/540 (37%), Gaps = 80/540 (14%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP--GCEPSSMYHVGQVVKCRIMSSIP 520
           I  G + + +    F+ F +  +G   R+E   +P  G E  ++          I+S   
Sbjct: 31  IIKGKVVQFDDTDVFIDFESKSEGKIKRNEFDKEPIIGEEIEAIVSGEDDKGYVILSKSE 90

Query: 521 ASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 580
             +R +   +        D+ VK  S V+GVV  V      V ++     +   P   + 
Sbjct: 91  IDKRKSQELI--------DNAVKNNSTVTGVVKEVIKGGFKVSIMG---HQAFCPFSQI- 138

Query: 581 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNS 638
              + A  +K     G E+ +  V+     ++++S + +L+   Q   + S  +++  N 
Sbjct: 139 ---DIARGIKETDYIGNEY-EFRVIKKNGRDVVVSRR-ALLEETQNASIESFLNNLKEND 193

Query: 639 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 698
           +++G V NI + G F+       GF         +  +       G+     +L ++ E 
Sbjct: 194 IINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFKVLHIDKEN 253

Query: 699 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 758
            ++ L +KQ               L E+               K+VE + IG VI+G+V 
Sbjct: 254 KKVDLGIKQ---------------LDEDPWG------------KFVEQYHIGDVIQGEVT 286

Query: 759 ESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
               FG  V   +      H     + +H       V+ G+ ++  ILD+  AER + L 
Sbjct: 287 NVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLG 346

Query: 813 LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 872
           LK V               K+       KD  V   V   V+ + +N+ V  LP     I
Sbjct: 347 LKQV---------------KENPWDTVEKDFPVKSAVKCKVKRIIKNFAVFELPNGLEGI 391

Query: 873 GYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 931
              S  D+       K ++  G+ V   +M++       R+ L  K   E+     ++A 
Sbjct: 392 CDISDFDWRNNIVNMKDYIKEGEDVNMVIMSIDRDKQ--RIKLSYKHTKESPWRLFEKAH 449

Query: 932 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 991
            +     GS+V   +  I      +       G +H+++V   K + +E +    K+G+T
Sbjct: 450 PQ-----GSIVDGTVKAIVDSGAIVALEDDLEGYMHVSQVEIPKGSTLEEV---VKVGET 501



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 137/300 (45%), Gaps = 49/300 (16%)

Query: 1125 NDNMQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            N ++++F++   E DI+ G++  I     G  ++I P   G   F  + N+     +   
Sbjct: 179  NASIESFLNNLKENDIINGKVKNIEKF--GAFIEITPGFDG---FLAIPNMSWDKVI--- 230

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
                 +P S   +G+    KVL I +  +    V+L ++                D D  
Sbjct: 231  -----NPKSIISKGEERMFKVLHIDKENK---KVDLGIKQ--------------LDEDPW 268

Query: 1242 GKHLEK--IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEF 1298
            GK +E+  I D     ++QG V NV   G F+ ++  ++  V +S+LS + +V +P    
Sbjct: 269  GKFVEQYHIGD-----VIQGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFV 323

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESY 1357
              G  +  ++L +    +++ + LK          E     +  V   V  ++KR+ +++
Sbjct: 324  KKGAFLECKILDMNAAERKLTLGLKQVKENPWDTVE----KDFPVKSAVKCKVKRIIKNF 379

Query: 1358 GLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             +F  + N  L G+C +S+    +++ N++   + GE V + I+ +D++K+RI L  K +
Sbjct: 380  AVF-ELPN-GLEGICDISDFDWRNNIVNMKDYIKEGEDVNMVIMSIDRDKQRIKLSYKHT 437



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 140/353 (39%), Gaps = 51/353 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G ++KGKV+  D     + F    +        +EF+     K+  +G E+   V G   
Sbjct: 29  GKIIKGKVVQFDDTDVFIDFESKSEGKI---KRNEFD-----KEPIIGEEIEAIVSGEDD 80

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
           K   +  K  + K K   L   A   +  +T G + ++ K G  V    G Q F P S++
Sbjct: 81  KGYVILSKSEIDKRKSQELIDNAVKNNSTVT-GVVKEVIKGGFKVSIM-GHQAFCPFSQI 138

Query: 494 GLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 549
            +  G + +   ++G   + R++      +  SRR  L      +  S  + +K   +++
Sbjct: 139 DIARGIKETD--YIGNEYEFRVIKKNGRDVVVSRRALLEETQNASIESFLNNLKENDIIN 196

Query: 550 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLVLDNE 608
           G V  +      +  I  G+  G +   +++   +     KS+I  G E   ++L +D E
Sbjct: 197 GKVKNIEKFGAFIE-ITPGFD-GFLAIPNMS--WDKVINPKSIISKGEERMFKVLHIDKE 252

Query: 609 SSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
           +  + L  K        QL  D         H   V+ G V N+ + G FV+    + G 
Sbjct: 253 NKKVDLGIK--------QLDEDPWGKFVEQYHIGDVIQGEVTNVKKFGAFVKVADGIEGL 304

Query: 664 APRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 707
              S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 305 VHVS--------DLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQ 349



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 135/322 (41%), Gaps = 48/322 (14%)

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL I+KE K + L ++   +    K V+          H GD++ G ++ +     G  V
Sbjct: 246  VLHIDKENKKVDLGIKQLDEDPWGKFVEQ--------YHIGDVIQGEVTNVKKF--GAFV 295

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
            ++   + G VH ++L           ++    +P     +G F++CK+L+++   R    
Sbjct: 296  KVADGIEGLVHVSDL----------SWNSHVNNPSDFVKKGAFLECKILDMNAAER---- 341

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
             +L+L     G+            + P   +EK  D      V+  VK +        L 
Sbjct: 342  -KLTL-----GLKQVK--------ENPWDTVEK--DFPVKSAVKCKVKRIIKNFAVFELP 385

Query: 1275 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
              L+    +S+      + + +     G+ V   ++S++   +R++++ K +      +S
Sbjct: 386  NGLEGICDISDFDWRNNIVNMKDYIKEGEDVNMVIMSIDRDKQRIKLSYKHT-----KES 440

Query: 1334 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
                    H  G IV G +K +   G  + +E+ +L G  HVS++       +E + + G
Sbjct: 441  PWRLFEKAHPQGSIVDGTVKAIVDSGAIVALED-DLEGYMHVSQVEIPKGSTLEEVVKVG 499

Query: 1393 EKVKVKILKVDKEKRRISLGMK 1414
            E     + +V++ KRRISL  +
Sbjct: 500  ETYPFVVREVNQSKRRISLSRR 521


>gi|357010264|ref|ZP_09075263.1| RNA binding S1 domain-containing protein [Paenibacillus elgii B69]
          Length = 405

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 180/378 (47%), Gaps = 48/378 (12%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
            G  VTG V KVD + A++ +       + + +      +L   +    +G+ +   VL+I
Sbjct: 31   GDIVTGKVIKVDADQAVVDVGYKYDGIVSVRE--LSSVQLDNAEEIVQVGQEIELKVLTI 88

Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1158
            +  K+ L L  R      S+K    S + +   +    I+  ++++++ G  GLVV +G 
Sbjct: 89   DDNKEKLVLSKRAID---SEK----SWEKLAADMENKTILEAKVAEVVKG--GLVVDVG- 138

Query: 1159 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1218
             L G V  + ++   V D             S Y +G+ ++ +V E+ R       V LS
Sbjct: 139  -LRGFVPASMVERTFVED------------FSDY-KGRTLRLRVKEMDRE---KNKVILS 181

Query: 1219 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1278
             +  LD        +L T      K  E I  LS    + G V+ +T  G F+ +   +D
Sbjct: 182  QKDVLD-------EELET------KKQETISKLSVGQELMGTVQRLTQFGAFVDIG-GVD 227

Query: 1279 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1338
              V +S ++  +VE   +    G  V  +VL ++P ++R+ +++K +  +      + N 
Sbjct: 228  GLVHISEMAWHHVEHASEVVKEGDQVRVQVLKLDPANERISLSIKAT--QPGPWESVKN- 284

Query: 1339 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1398
              +++GDIV G +KR+  +G FI +    + GL H+S+++  H+     + + G++V+VK
Sbjct: 285  -KINIGDIVTGTVKRLVQFGAFIEV-APGVEGLVHISQIAHRHIATPFEVLKEGQEVQVK 342

Query: 1399 ILKVDKEKRRISLGMKSS 1416
            +L ++  ++RISL +K +
Sbjct: 343  VLDMNPGEKRISLSIKET 360



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 156/354 (44%), Gaps = 37/354 (10%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K G +V GKVI VD+  A+V        +  +  +S  ++    +  +VG E+  +VL 
Sbjct: 28  IKKGDIVTGKVIKVDADQAVVDVGYKYDGIVSVRELSSVQLDNAEEIVQVGQEIELKVLT 87

Query: 431 VKSKRITVTHKKTLVKSKLAILSS------YAEATDRLITHGWITKIEKHGCFVRFYNGV 484
           +        +K+ LV SK AI S        A+  ++ I    + ++ K G  V    G+
Sbjct: 88  IDD------NKEKLVLSKRAIDSEKSWEKLAADMENKTILEAKVAEVVKGGLVVDV--GL 139

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRI------MSSIPASRRINLSFMMKPTRVSE 538
           +GF P S +      E  S Y  G+ ++ R+       + +  S++  L   ++  +   
Sbjct: 140 RGFVPAS-MVERTFVEDFSDYK-GRTLRLRVKEMDREKNKVILSQKDVLDEELETKKQET 197

Query: 539 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGY 597
              + +G  + G V  +T     V +   G   G +    +A  H+EHA+    V+K G 
Sbjct: 198 ISKLSVGQELMGTVQRLTQFGAFVDI---GGVDGLVHISEMAWHHVEHAS---EVVKEGD 251

Query: 598 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFV 654
           +   Q+L LD  +  + LS     I + Q  P ++  + I+   +V G V  +++ G F+
Sbjct: 252 QVRVQVLKLDPANERISLS-----IKATQPGPWESVKNKINIGDIVTGTVKRLVQFGAFI 306

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
                + G    S+      A   +    GQ V+  +LD+N    RI+LS+K++
Sbjct: 307 EVAPGVEGLVHISQIAHRHIATPFEVLKEGQEVQVKVLDMNPGEKRISLSIKET 360



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 1327 SRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
            S   SQ E + N++ +  GDIV G++ +V++    + +      G+  V ELS   +DN 
Sbjct: 13   SAEVSQEESMANVTIIKKGDIVTGKVIKVDADQAVVDV-GYKYDGIVSVRELSSVQLDNA 71

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            E I + G+++++K+L +D  K ++ L  ++
Sbjct: 72   EEIVQVGQEIELKVLTIDDNKEKLVLSKRA 101



 Score = 40.8 bits (94), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 313 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 372
             V IS++A   V    +  KEG  VRV++L         +  +KA+         + + 
Sbjct: 228 GLVHISEMAWHHVEHASEVVKEGDQVRVQVLKLDPANERISLSIKATQPGPWESVKNKIN 287

Query: 373 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 432
            G +V G V  +  FGA ++   GV+ L  +  ++   I  P +  K G E+  +VL + 
Sbjct: 288 IGDIVTGTVKRLVQFGAFIEVAPGVEGLVHISQIAHRHIATPFEVLKEGQEVQVKVLDMN 347

Query: 433 --SKRITVTHKKT 443
              KRI+++ K+T
Sbjct: 348 PGEKRISLSIKET 360


>gi|302528116|ref|ZP_07280458.1| ribosomal protein S1 [Streptomyces sp. AA4]
 gi|302437011|gb|EFL08827.1| ribosomal protein S1 [Streptomyces sp. AA4]
          Length = 497

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 184/408 (45%), Gaps = 64/408 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 18   VAVNDIGSEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 77

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 78   KHDVDPAEV------VAVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 124

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                + + V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 125  ELKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 175

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 176  --------LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF-------------LN 211

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
             L+   + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 212  ALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 270

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1368
             V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 271  DVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GI 324

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL H+SEL+E HV+  E + +    V VK++ +D E+RRISL +K +
Sbjct: 325  EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQA 372



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 52/369 (14%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 41  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQK 100

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 101 EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP 156

Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 157 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 212

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 213 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 271

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 272 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 304

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSVIQAAILDVAKA 805
            GKV +   FG  V  EE   + G +   +LA   VE        +G V+   ++D+   
Sbjct: 305 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEIPEQVVQVNGDVM-VKVIDIDLE 361

Query: 806 ERLVDLSLK 814
            R + LSLK
Sbjct: 362 RRRISLSLK 370



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 148/353 (41%), Gaps = 31/353 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKED 102

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
            G    S+  +       +   V   V   ++D++ E  RI+LSLKQ+    T
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQANEGVT 377


>gi|268316851|ref|YP_003290570.1| 30S ribosomal protein S1 [Rhodothermus marinus DSM 4252]
 gi|262334385|gb|ACY48182.1| ribosomal protein S1 [Rhodothermus marinus DSM 4252]
          Length = 720

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 7/166 (4%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            + P  +++G VKN+T  G FI L   +D  + +++LS G V  P +   +G+ +   VL 
Sbjct: 289  MEPGQVLEGTVKNITDFGVFIDLG-GVDGLLHITDLSWGRVSHPSELVQLGQKLNVVVLD 347

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
             +   +R+ + LK            N       GD+V G++  +  YG F+ +E   + G
Sbjct: 348  YDKERQRISLGLKQLQPHPWE----NIDEKYKEGDVVEGKVVSITDYGAFVELEK-GIEG 402

Query: 1371 LCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            L H+SE+S  DH+ +       G+ VKVKIL +D+E R+ISLGMK 
Sbjct: 403  LVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQ 448



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 96/166 (57%), Gaps = 15/166 (9%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1314
            +V+G V ++T  G F+ L + ++  V +S +S   +++ P ++  +G+LV  ++L+++  
Sbjct: 379  VVEGKVVSITDYGAFVELEKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDRE 438

Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLH----VGDIVIGQIKRVESYGLFITIENTNLVG 1370
             +++ + +K        Q E N    L      G ++ G+++++ ++G+F+ IE   + G
Sbjct: 439  GRKISLGMK--------QLEPNPWEGLSKRYPPGTVLRGKVRKITNFGVFVEIE-PGIDG 489

Query: 1371 LCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            L H+S+LS    + +   + + GE++ V +L+VD+E RRISLG K 
Sbjct: 490  LVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDEENRRISLGHKQ 535



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 17/159 (10%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IGK +  +++ + P ++ V V+ +    +   +     LS +  G ++ G +K +  +G+
Sbjct: 248  IGKRMEFKIVKINPANENVVVSHRALLEKELQKQREEILSKMEPGQVLEGTVKNITDFGV 307

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
            FI +   +  GL H+++LS   V +   + + G+K+ V +L  DKE++RISLG+K     
Sbjct: 308  FIDLGGVD--GLLHITDLSWGRVSHPSELVQLGQKLNVVVLDYDKERQRISLGLK----- 360

Query: 1420 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQD 1458
                 LQ    E  DE       Y    ++E   V++ D
Sbjct: 361  ----QLQPHPWENIDE------KYKEGDVVEGKVVSITD 389



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 146/350 (41%), Gaps = 34/350 (9%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S ++PG V++G V  +  FG  +   GGV  L  +  +S   +  P +  ++G +L   V
Sbjct: 287 SKMEPGQVLEGTVKNITDFGVFIDL-GGVDGLLHITDLSWGRVSHPSELVQLGQKLNVVV 345

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L    + +RI++  K+        I   Y E     +  G +  I  +G FV    G++G
Sbjct: 346 LDYDKERQRISLGLKQLQPHPWENIDEKYKEGD---VVEGKVVSITDYGAFVELEKGIEG 402

Query: 487 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL 544
               SE+   D    PS    +GQ+VK +I++     R+I+L    ++P     + L K 
Sbjct: 403 LVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQLEPN--PWEGLSKR 460

Query: 545 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPG 596
              G+++ G V  +T   V V +       G     H++D      ++H +    V+K G
Sbjct: 461 YPPGTVLRGKVRKITNFGVFVEI-----EPGIDGLVHISDLSWTRRIQHPS---EVVKEG 512

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH-GYVCNIIETGCFV 654
            E D  +L +D E+  + L  K    N      +D + ++     H   V  I + G  V
Sbjct: 513 EELDVVVLEVDEENRRISLGHKQVQTNPW----NDFATVYAEGTDHKARVVRIEDNGLVV 568

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
                +  F P  +       +  + Y+VG  +   ++  ++    I +S
Sbjct: 569 ELPLGVEAFVPAGEL--KHSKNFQEFYHVGDELELRVVRFSAADREIVMS 616



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 44/238 (18%)

Query: 593 IKPGYEFD---------QLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVVHG 642
           ++P  +FD         +++ ++  + N+++S +  L    Q Q     S + P  V+ G
Sbjct: 238 VRPVRDFDAYIGKRMEFKIVKINPANENVVVSHRALLEKELQKQREEILSKMEPGQVLEG 297

Query: 643 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 702
            V NI + G F+  LG + G    +    G+ +  S+   +GQ +   +LD + E  RI+
Sbjct: 298 TVKNITDFGVFID-LGGVDGLLHITDLSWGRVSHPSELVQLGQKLNVVVLDYDKERQRIS 356

Query: 703 LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 762
           L LKQ                       LQ       + K+ E    G V+EGKV    D
Sbjct: 357 LGLKQ-----------------------LQPHPWENIDEKYKE----GDVVEGKVVSITD 389

Query: 763 FGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
           +G  V  E+      H     +  H +     V  G +++  IL++ +  R + L +K
Sbjct: 390 YGAFVELEKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMK 447



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 144/339 (42%), Gaps = 56/339 (16%)

Query: 1075 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1134
            PSEL        +G+ +   VL  +KE++ + L L+  Q            +N+     E
Sbjct: 331  PSEL------VQLGQKLNVVVLDYDKERQRISLGLKQLQPH--------PWENIDEKYKE 376

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD+V G++  I     G  V++   + G VH +E+     +D +         P      
Sbjct: 377  GDVVEGKVVSITDY--GAFVELEKGIEGLVHISEM---SWTDHIK-------HPSQKVSL 424

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK K+L I R  R     ++SL     GM     +        P + L K     P 
Sbjct: 425  GQLVKVKILNIDREGR-----KISL-----GMKQLEPN--------PWEGLSK--RYPPG 464

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEP 1313
             +++G V+ +T+ G F+ +   +D  V +S+LS    ++ P +    G+ +   VL V+ 
Sbjct: 465  TVLRGKVRKITNFGVFVEIEPGIDGLVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDE 524

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLC 1372
             ++R+ +  K   +     +  N+ + ++  G     ++ R+E  GL + +    +    
Sbjct: 525  ENRRISLGHKQVQT-----NPWNDFATVYAEGTDHKARVVRIEDNGLVVEL-PLGVEAFV 578

Query: 1373 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
               EL   H  N +  Y  G+++++++++     R I +
Sbjct: 579  PAGELK--HSKNFQEFYHVGDELELRVVRFSAADREIVM 615



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 95/467 (20%), Positives = 188/467 (40%), Gaps = 64/467 (13%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           + + V  G +VKG+++AV     I+        +       + EI KPG + +V    V 
Sbjct: 117 SFTTVNEGEIVKGRILAVGEKEVIIDIGFKSTGIVSRNEFGDAEI-KPGDEVEV---FVE 172

Query: 427 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           R+   + + +    K   V+    +  +Y    +  +  G I +  K G     ++G++ 
Sbjct: 173 RLEDAQGQLVLSKLKADRVRRWERVEDAY---YNEKVIEGTIVRRVKGGMIAEIFDGLEA 229

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSEDDLV 542
           F P S++ + P  +  +  ++G+ ++ +I+   PA+  + +S       +  +  E+ L 
Sbjct: 230 FLPGSQIDVRPVRDFDA--YIGKRMEFKIVKINPANENVVVSHRALLEKELQKQREEILS 287

Query: 543 KL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPG 596
           K+  G ++ G V  +T   V + +   G   G +   H+ D     + H +    +++ G
Sbjct: 288 KMEPGQVLEGTVKNITDFGVFIDL---GGVDGLL---HITDLSWGRVSHPS---ELVQLG 338

Query: 597 YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
            + + ++VLD +     +S     +        D  +     VV G V +I + G FV  
Sbjct: 339 QKLN-VVVLDYDKERQRISLGLKQLQPHPWENIDEKYKE-GDVVEGKVVSITDYGAFVEL 396

Query: 657 LGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
              + G    S+ +        S+   +GQ V+  IL+++ E  +I+L +KQ        
Sbjct: 397 EKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQ-------- 448

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE---- 771
                          L+ +   G   +    +  G+V+ GKV +  +FGV V  E     
Sbjct: 449 ---------------LEPNPWEGLSKR----YPPGTVLRGKVRKITNFGVFVEIEPGIDG 489

Query: 772 --HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 816
             H     +    Q     V+ G  +   +L+V +  R + L  K V
Sbjct: 490 LVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDEENRRISLGHKQV 536


>gi|423625417|ref|ZP_17601195.1| ribosomal protein S1 [Bacillus cereus VD148]
 gi|401255097|gb|EJR61322.1| ribosomal protein S1 [Bacillus cereus VD148]
          Length = 382

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQGKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     S Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFSDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 29/356 (8%)

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQGKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 538
           +GF P S + +    E  S Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFSDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 539 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 596
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDIVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 653
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
           V  L  + G    S+  +    + ++   +GQ V+  +L+V+    RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAL 346


>gi|410465315|ref|ZP_11318650.1| ribosomal protein S1 [Desulfovibrio magneticus str. Maddingley
           MBC34]
 gi|409981573|gb|EKO38122.1| ribosomal protein S1 [Desulfovibrio magneticus str. Maddingley
           MBC34]
          Length = 576

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 150/348 (43%), Gaps = 34/348 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G  V G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQTVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQ 266

Query: 434 --KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
             +++++  K+ +      I   Y E T R+   G +T +  +G FV    GV+G    S
Sbjct: 267 DKQKVSLGMKQLIADPWENIAGKYPEDT-RM--SGKVTNLVDYGAFVELEPGVEGLVHIS 323

Query: 492 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 546
           E+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V      G+
Sbjct: 324 EMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLG--MKQVRPNPWDIVAEKYPEGT 381

Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 600
           ++ G V  +T   + +     G   G     H++D     +  K V  PG  F       
Sbjct: 382 ILEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKSGDIVM 432

Query: 601 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 658
            ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGAMVKGTVTNITDFGLFVEVEE 488

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
            + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 489 GIEGLVHVSEISRKKVKTPAEIYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 63/385 (16%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1094
            GQ VTG V  +  E+ +      L   + I D +++    P EL       H+G  +   
Sbjct: 208  GQTVTGRVKNI-TEYGVFVDLGGLDGLMHITDMSWKRIKHPKEL------VHLGDELELK 260

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VLS +++K+ + L ++     I+D       +N+     E   + G+++ ++    G  V
Sbjct: 261  VLSFDQDKQKVSLGMKQL---IADPW-----ENIAGKYPEDTRMSGKVTNLVDY--GAFV 310

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
            ++ P + G VH +E+           +      P      G  V+  VL +    +    
Sbjct: 311  ELEPGVEGLVHISEMS----------WTRKLRHPSQMVHVGDEVEVVVLSVDPDKK---- 356

Query: 1215 VELSLRSSLDGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1272
                 R SL GM     N  D+              E      I++G VKN+T  G FI 
Sbjct: 357  -----RISL-GMKQVRPNPWDIVA------------EKYPEGTILEGSVKNITEFGIFIG 398

Query: 1273 LSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
            +   +D  + +S++S    V  P + F  G +V  +VL+V+  +++  + +K       S
Sbjct: 399  IEDGIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVDKENEKFTLGIKQ-----LS 453

Query: 1332 QSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1390
            +     + + + VG +V G +  +  +GLF+ +E   + GL HVSE+S   V     IY+
Sbjct: 454  EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEE-GIEGLVHVSEISRKKVKTPAEIYK 512

Query: 1391 AGEKVKVKILKVDKEKRRISLGMKS 1415
             G++++ K++ V  ++RR+ L +KS
Sbjct: 513  EGDEIEAKVIHVSADERRLGLSIKS 537



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 9/166 (5%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L     V G VKN+T  G F+ L   LD  + ++++S   ++ P++   +G  +  +VLS
Sbjct: 205  LEEGQTVTGRVKNITEYGVFVDLG-GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI-GQIKRVESYGLFITIENTNLV 1369
             +   ++V + +K      A   E  N++  +  D  + G++  +  YG F+ +E   + 
Sbjct: 264  FDQDKQKVSLGMK---QLIADPWE--NIAGKYPEDTRMSGKVTNLVDYGAFVELE-PGVE 317

Query: 1370 GLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            GL H+SE+S    + +   +   G++V+V +L VD +K+RISLGMK
Sbjct: 318  GLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMK 363



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 6/123 (4%)

Query: 1294 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQI 1351
            P+ +  +G+    RVL +      V V+ +    + R + + ++  L  L  G  V G++
Sbjct: 158  PDMDALVGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL--LKTLEEGQTVTGRV 215

Query: 1352 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
            K +  YG+F+ +    L GL H++++S   + + + +   G+++++K+L  D++K+++SL
Sbjct: 216  KNITEYGVFVDL--GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSL 273

Query: 1412 GMK 1414
            GMK
Sbjct: 274  GMK 276



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 140/369 (37%), Gaps = 81/369 (21%)

Query: 475 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 528
           G +     GV+ F P S + L P  +  ++  VGQ  + R++      S++  SRR+ L 
Sbjct: 134 GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKINRRRSNVIVSRRVLLE 191

Query: 529 FMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPT 576
                 R    DL+K    G  V+G V  +T   V V         ++    + +   P 
Sbjct: 192 ERRDSMR---KDLLKTLEEGQTVTGRVKNITEYGVFVDLGGLDGLMHITDMSWKRIKHPK 248

Query: 577 E--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 634
           E  HL D LE                ++L  D +   + L  K  + +  + +   A   
Sbjct: 249 ELVHLGDELEL---------------KVLSFDQDKQKVSLGMKQLIADPWENI---AGKY 290

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILD 693
             ++ + G V N+++ G FV     + G    S+    ++    S+  +VG  V   +L 
Sbjct: 291 PEDTRMSGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLS 350

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
           V+ +  RI+L +KQ   +  D                              E +  G+++
Sbjct: 351 VDPDKKRISLGMKQVRPNPWDIV---------------------------AEKYPEGTIL 383

Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGSVIQAAILDVAKA 805
           EG V    +FG+ +  E+  D  G I    ++        G   +SG ++ A +L V K 
Sbjct: 384 EGSVKNITEFGIFIGIEDGID--GLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVDKE 441

Query: 806 ERLVDLSLK 814
                L +K
Sbjct: 442 NEKFTLGIK 450



 Score = 47.8 bits (112), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 168/390 (43%), Gaps = 47/390 (12%)

Query: 64  VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 122
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG  +T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQTVTGRVKNITEYG 222

Query: 123 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLS-----S 173
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLGMKQLIA 280

Query: 174 DP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 232
           DP + ++    +D +            +S +V ++++ G  +       G V I  +  T
Sbjct: 281 DPWENIAGKYPEDTR------------MSGKVTNLVDYGAFVELEPGVEGLVHISEMSWT 328

Query: 233 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIY 286
               +     +   +V   +L VDP  + + L +     NP+ ++  + P   +  G + 
Sbjct: 329 RKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTILEGSVK 388

Query: 287 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF 345
           + ++        G+ + I          + +SD++  ++VR   + +K G  V  ++L  
Sbjct: 389 NITE-------FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTV 438

Query: 346 -RHLEGLATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPL 403
            +  E    GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +
Sbjct: 439 DKENEKFTLGIKQLS--EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHV 496

Query: 404 PHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
             +S  ++  P + +K G E+  +V+ V +
Sbjct: 497 SEISRKKVKTPAEIYKEGDEIEAKVIHVSA 526


>gi|363899147|ref|ZP_09325658.1| hypothetical protein HMPREF9625_00318 [Oribacterium sp. ACB1]
 gi|395209528|ref|ZP_10398622.1| S1 RNA binding domain protein [Oribacterium sp. ACB8]
 gi|361959477|gb|EHL12764.1| hypothetical protein HMPREF9625_00318 [Oribacterium sp. ACB1]
 gi|394705159|gb|EJF12688.1| S1 RNA binding domain protein [Oribacterium sp. ACB8]
          Length = 368

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 183/395 (46%), Gaps = 76/395 (19%)

Query: 1078 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1134
            L+E  +  H G+ VTG V+S+  ++  L +  +   DGI  ++ D S DN   + T +  
Sbjct: 10   LEESLKSVHAGEIVTGTVISVKPDEIALNIGYK--SDGIMTRS-DYSADNQLDLTTVVKV 66

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD +  ++ K+  G G +V+     L  +    EL+                     ++E
Sbjct: 67   GDEIECKVKKVNDGEGQVVLSHRDALQSKAS-EELRK-------------------AFEE 106

Query: 1195 GQFVKCKVLEISRTVRGTFHVELS-----LRSSLDGMSSTNSSDLS----TDVD------ 1239
               +  KV+++   V+G  +VE+      + +SL  +S +   DL+     D+       
Sbjct: 107  NAILTGKVVQV---VKGGLNVEVDGARIFVPASL--VSDSFERDLNKYQGQDIQFVITEF 161

Query: 1240 TPGK------------------HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1281
             P K                  H +   +L+   +  G VKN+T  G FI L    D  +
Sbjct: 162  NPAKRRIIGDRKQIMSAQKKEQHDKLFSELAEGDVRTGVVKNLTDFGAFIDLG-GADGLL 220

Query: 1282 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1341
             +S +S G +E+P+K F  G+ V   VL  E   +R+ +T K  +      +E    S  
Sbjct: 221  HISEMSWGRIENPKKLFKPGQEV--EVLVKEISGERIALTRKFPNENPWKDAE----SKY 274

Query: 1342 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1401
             VG+IV G++ R+  +G FI + +  +  L HVS++S+DHV+    +   G++++ +++ 
Sbjct: 275  AVGEIVKGKVARMTDFGAFIEL-DKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVD 333

Query: 1402 VDKEKRRISLGMKSSYFKNDAD----NLQMSSEEE 1432
            +D +  +ISL +K+   +++ D    ++  +SEEE
Sbjct: 334  LDVDNHKISLSIKALLPEDEQDTADVDVAAASEEE 368



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 104/244 (42%), Gaps = 15/244 (6%)

Query: 290 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---- 345
           KVV+V +G GL +++    +  PA + +SD  E ++ K +     G  ++  I  F    
Sbjct: 113 KVVQVVKG-GLNVEVDGARIFVPASL-VSDSFERDLNKYQ-----GQDIQFVITEFNPAK 165

Query: 346 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 405
           R + G    I+ A   E      S++  G V  G V  +  FGA +   GG   L  +  
Sbjct: 166 RRIIGDRKQIMSAQKKEQHDKLFSELAEGDVRTGVVKNLTDFGAFIDL-GGADGLLHISE 224

Query: 406 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 465
           MS   I  P K FK G E+   V  +  +RI +T K           S YA      I  
Sbjct: 225 MSWGRIENPKKLFKPGQEVEVLVKEISGERIALTRKFPNENPWKDAESKYAVGE---IVK 281

Query: 466 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 525
           G + ++   G F+    G+      S++  D   +PS +   GQ ++ R++     + +I
Sbjct: 282 GKVARMTDFGAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHKI 341

Query: 526 NLSF 529
           +LS 
Sbjct: 342 SLSI 345



 Score = 42.0 bits (97), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 153/359 (42%), Gaps = 37/359 (10%)

Query: 101 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGLLLQ 156
           SL++V  G ++T  V S++     L+ G  S  G + R++ + ++ +D    VK G  ++
Sbjct: 13  SLKSVHAGEIVTGTVISVKPDEIALNIGYKS-DGIMTRSDYSADNQLDLTTVVKVGDEIE 71

Query: 157 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 216
             V+ ++     V LS      SK   +  K    + ++ G +V           V+   
Sbjct: 72  CKVKKVNDGEGQVVLSHRDALQSKASEELRKAFEENAILTGKVVQ----------VVKGG 121

Query: 217 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD--PTSRAVGLTLNPYLLHNR 274
           L        IF +  +  + +++ D N+++  + + +  +  P  R + +     ++  +
Sbjct: 122 LNVEVDGARIF-VPASLVSDSFERDLNKYQGQDIQFVITEFNPAKRRI-IGDRKQIMSAQ 179

Query: 275 APPSHVKV------GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 328
               H K+      GD+  ++ VV+     G  +D+          + IS+++   +   
Sbjct: 180 KKEQHDKLFSELAEGDV--RTGVVKNLTDFGAFIDLGGAD----GLLHISEMSWGRIENP 233

Query: 329 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG-LVFTHSDVKPGMVVKGKVIAVDSF 387
           +K +K G  V V +   + + G    + +    E       S    G +VKGKV  +  F
Sbjct: 234 KKLFKPGQEVEVLV---KEISGERIALTRKFPNENPWKDAESKYAVGEIVKGKVARMTDF 290

Query: 388 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSKRITVTHKKTL 444
           GA ++   G+ AL  +  +S+  + KP    + G E+  RV  L V + +I+++ K  L
Sbjct: 291 GAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHKISLSIKALL 349


>gi|345303197|ref|YP_004825099.1| 30S ribosomal protein S1 [Rhodothermus marinus SG0.5JP17-172]
 gi|345112430|gb|AEN73262.1| ribosomal protein S1 [Rhodothermus marinus SG0.5JP17-172]
          Length = 709

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 7/166 (4%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            + P  +++G VKN+T  G FI L   +D  + +++LS G V  P +   +G+ +   VL 
Sbjct: 274  MEPGQVLEGTVKNITDFGVFIDLG-GVDGLLHITDLSWGRVSHPSELVQLGQKLNVVVLD 332

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
             +   +R+ + LK            N       GD+V G++  +  YG F+ +E   + G
Sbjct: 333  YDKERQRISLGLKQLQPHPWE----NIDEKYKEGDVVEGKVVSITDYGAFVELEK-GIEG 387

Query: 1371 LCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            L H+SE+S  DH+ +       G+ VKVKIL +D+E R+ISLGMK 
Sbjct: 388  LVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQ 433



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 96/166 (57%), Gaps = 15/166 (9%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1314
            +V+G V ++T  G F+ L + ++  V +S +S   +++ P ++  +G+LV  ++L+++  
Sbjct: 364  VVEGKVVSITDYGAFVELEKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDRE 423

Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLH----VGDIVIGQIKRVESYGLFITIENTNLVG 1370
             +++ + +K        Q E N    L      G ++ G+++++ ++G+F+ IE   + G
Sbjct: 424  GRKISLGMK--------QLEPNPWEGLSKRYPPGTVLRGKVRKITNFGVFVEIE-PGIDG 474

Query: 1371 LCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            L H+S+LS    + +   + + GE++ V +L+VD+E RRISLG K 
Sbjct: 475  LVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDEENRRISLGHKQ 520



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 17/159 (10%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            IGK +  +++ + P ++ V V+ +    +   +     LS +  G ++ G +K +  +G+
Sbjct: 233  IGKRMEFKIVKINPANENVVVSHRALLEKELQKQREEILSKMEPGQVLEGTVKNITDFGV 292

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419
            FI +   +  GL H+++LS   V +   + + G+K+ V +L  DKE++RISLG+K     
Sbjct: 293  FIDLGGVD--GLLHITDLSWGRVSHPSELVQLGQKLNVVVLDYDKERQRISLGLK----- 345

Query: 1420 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQD 1458
                 LQ    E  DE       Y    ++E   V++ D
Sbjct: 346  ----QLQPHPWENIDE------KYKEGDVVEGKVVSITD 374



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 146/350 (41%), Gaps = 34/350 (9%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S ++PG V++G V  +  FG  +   GGV  L  +  +S   +  P +  ++G +L   V
Sbjct: 272 SKMEPGQVLEGTVKNITDFGVFIDL-GGVDGLLHITDLSWGRVSHPSELVQLGQKLNVVV 330

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L    + +RI++  K+        I   Y E     +  G +  I  +G FV    G++G
Sbjct: 331 LDYDKERQRISLGLKQLQPHPWENIDEKYKEGD---VVEGKVVSITDYGAFVELEKGIEG 387

Query: 487 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL 544
               SE+   D    PS    +GQ+VK +I++     R+I+L    ++P     + L K 
Sbjct: 388 LVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQLEPN--PWEGLSKR 445

Query: 545 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPG 596
              G+++ G V  +T   V V +       G     H++D      ++H +    V+K G
Sbjct: 446 YPPGTVLRGKVRKITNFGVFVEI-----EPGIDGLVHISDLSWTRRIQHPS---EVVKEG 497

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH-GYVCNIIETGCFV 654
            E D  +L +D E+  + L  K    N      +D + ++     H   V  I + G  V
Sbjct: 498 EELDVVVLEVDEENRRISLGHKQVQTNPW----NDFATVYAEGTDHKARVVRIEDNGLVV 553

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
                +  F P  +       +  + Y+VG  +   ++  ++    I +S
Sbjct: 554 ELPLGVEAFVPAGEL--KHSKNFQEFYHVGDELELRVVRFSAADREIVMS 601



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 44/240 (18%)

Query: 593 IKPGYEFD---------QLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVVHG 642
           ++P  +FD         +++ ++  + N+++S +  L    Q Q     S + P  V+ G
Sbjct: 223 VRPVRDFDAYIGKRMEFKIVKINPANENVVVSHRALLEKELQKQREEILSKMEPGQVLEG 282

Query: 643 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 702
            V NI + G F+  LG + G    +    G+ +  S+   +GQ +   +LD + E  RI+
Sbjct: 283 TVKNITDFGVFID-LGGVDGLLHITDLSWGRVSHPSELVQLGQKLNVVVLDYDKERQRIS 341

Query: 703 LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 762
           L LKQ                       LQ       + K+ E    G V+EGKV    D
Sbjct: 342 LGLKQ-----------------------LQPHPWENIDEKYKE----GDVVEGKVVSITD 374

Query: 763 FGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 816
           +G  V  E+      H     +  H +     V  G +++  IL++ +  R + L +K +
Sbjct: 375 YGAFVELEKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQL 434



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 144/339 (42%), Gaps = 56/339 (16%)

Query: 1075 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1134
            PSEL        +G+ +   VL  +KE++ + L L+  Q            +N+     E
Sbjct: 316  PSEL------VQLGQKLNVVVLDYDKERQRISLGLKQLQPH--------PWENIDEKYKE 361

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD+V G++  I     G  V++   + G VH +E+     +D +         P      
Sbjct: 362  GDVVEGKVVSITDY--GAFVELEKGIEGLVHISEM---SWTDHIK-------HPSQKVSL 409

Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
            GQ VK K+L I R  R     ++SL     GM     +        P + L K     P 
Sbjct: 410  GQLVKVKILNIDREGR-----KISL-----GMKQLEPN--------PWEGLSK--RYPPG 449

Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEP 1313
             +++G V+ +T+ G F+ +   +D  V +S+LS    ++ P +    G+ +   VL V+ 
Sbjct: 450  TVLRGKVRKITNFGVFVEIEPGIDGLVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDE 509

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLC 1372
             ++R+ +  K   +     +  N+ + ++  G     ++ R+E  GL + +    +    
Sbjct: 510  ENRRISLGHKQVQT-----NPWNDFATVYAEGTDHKARVVRIEDNGLVVEL-PLGVEAFV 563

Query: 1373 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
               EL   H  N +  Y  G+++++++++     R I +
Sbjct: 564  PAGELK--HSKNFQEFYHVGDELELRVVRFSAADREIVM 600



 Score = 47.8 bits (112), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 95/467 (20%), Positives = 188/467 (40%), Gaps = 64/467 (13%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           + + V  G +VKG+++AV     I+        +       + EI KPG + +V    V 
Sbjct: 102 SFTTVNEGEIVKGRILAVGEKEVIIDIGFKSTGIVSRNEFGDAEI-KPGDEVEV---FVE 157

Query: 427 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           R+   + + +    K   V+    +  +Y    +  +  G I +  K G     ++G++ 
Sbjct: 158 RLEDAQGQLVLSKLKADRVRRWERVEDAY---YNEKVIEGTIVRRVKGGMIAEIFDGLEA 214

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSEDDLV 542
           F P S++ + P  +  +  ++G+ ++ +I+   PA+  + +S       +  +  E+ L 
Sbjct: 215 FLPGSQIDVRPVRDFDA--YIGKRMEFKIVKINPANENVVVSHRALLEKELQKQREEILS 272

Query: 543 KL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPG 596
           K+  G ++ G V  +T   V + +   G   G +   H+ D     + H +    +++ G
Sbjct: 273 KMEPGQVLEGTVKNITDFGVFIDL---GGVDGLL---HITDLSWGRVSHPS---ELVQLG 323

Query: 597 YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
            + + ++VLD +     +S     +        D  +     VV G V +I + G FV  
Sbjct: 324 QKLN-VVVLDYDKERQRISLGLKQLQPHPWENIDEKYKE-GDVVEGKVVSITDYGAFVEL 381

Query: 657 LGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
              + G    S+ +        S+   +GQ V+  IL+++ E  +I+L +KQ        
Sbjct: 382 EKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQ-------- 433

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE---- 771
                          L+ +   G   +    +  G+V+ GKV +  +FGV V  E     
Sbjct: 434 ---------------LEPNPWEGLSKR----YPPGTVLRGKVRKITNFGVFVEIEPGIDG 474

Query: 772 --HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 816
             H     +    Q     V+ G  +   +L+V +  R + L  K V
Sbjct: 475 LVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDEENRRISLGHKQV 521


>gi|319943161|ref|ZP_08017444.1| 30S ribosomal protein S1 [Lautropia mirabilis ATCC 51599]
 gi|319743703|gb|EFV96107.1| 30S ribosomal protein S1 [Lautropia mirabilis ATCC 51599]
          Length = 583

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 183/423 (43%), Gaps = 73/423 (17%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1094
            G  V G V  + +  A + +   +   L I D A+     P+E+        +G+ +T  
Sbjct: 215  GAVVQGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPTEV------LQVGQEITAK 267

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISN---DNMQTFIHEGDIVGGRISKILSGVGG 1151
            VL  ++EK  + L ++   +   D  V IS     N + F        G+++ I     G
Sbjct: 268  VLKFDQEKNRVSLGIKQLGE---DPWVGISRRYPQNTRMF--------GKVTNITDY--G 314

Query: 1152 LVVQIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
              V+I P + G VH +E+    KN+  S  +S  DE              V+  VLEI  
Sbjct: 315  AFVEIEPGIEGLVHVSEMDWTNKNVNPSKVVSLGDE--------------VEVMVLEIDE 360

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
              R         R SL GM  T+++        P +     E+   N  V+G +K++T  
Sbjct: 361  DRR---------RISL-GMKQTHAN--------PWQEFS--ENHRRNDRVKGSIKSITDF 400

Query: 1268 GCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
            G FI L   +D  V LS+LS +   E   ++F  G  V   VL ++   +R+ + +K  +
Sbjct: 401  GVFIGLPGGIDGLVHLSDLSWNKSGEEAVRDFKKGDEVEAVVLGIDVERERISLGIKQLE 460

Query: 1327 SRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
                      N ++ H  G +V G +  V++ G  I IE   + G    SE+S D V++ 
Sbjct: 461  G-----DPFTNFASTHDKGSVVTGTVTSVDARGATIQIE-PEVEGYLRASEISRDRVEDA 514

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNR 1445
             T    G  V+  I+ +D++ R I+L +K+    + AD +Q  +E  +      +G+  R
Sbjct: 515  RTHLSEGATVESMIINIDRKNRSIALSIKARENADTADAMQRMAESSAVSGTTNLGALLR 574

Query: 1446 SSL 1448
            + L
Sbjct: 575  AKL 577



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 93/172 (54%), Gaps = 9/172 (5%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            +E L+   +VQG VKN+T  G F+ L   +D  + +++++   V  P +   +G+ +  +
Sbjct: 209  LETLTEGAVVQGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPTEVLQVGQEITAK 267

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI-VIGQIKRVESYGLFITIENT 1366
            VL  +    RV + +K        +     +S  +  +  + G++  +  YG F+ IE  
Sbjct: 268  VLKFDQEKNRVSLGIK-----QLGEDPWVGISRRYPQNTRMFGKVTNITDYGAFVEIE-P 321

Query: 1367 NLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1417
             + GL HVSE+   + + N   +   G++V+V +L++D+++RRISLGMK ++
Sbjct: 322  GIEGLVHVSEMDWTNKNVNPSKVVSLGDEVEVMVLEIDEDRRRISLGMKQTH 373



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 122/540 (22%), Positives = 218/540 (40%), Gaps = 108/540 (20%)

Query: 65  GQLVSCIVLQLDDD------KKEIGKR-KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 117
           G  VS  +  L+D        ++  KR   W+ L L+L    L   TV      T  VK 
Sbjct: 88  GDFVSVAIDSLEDGFGETRLSRDRAKRLAAWVQLELALESGDLVTGTV------TGKVKG 141

Query: 118 IEDHGYILHFGLPSFT----GFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDRT 165
                     GL   T     FLP       S ID +P        G  L+  V  +DR 
Sbjct: 142 ----------GLTVMTNGIRAFLP------GSLIDTRPVKDTTPYEGKTLEFKVIKLDRR 185

Query: 166 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 225
           R  V LS     V +    + +   ++ L  G +V   V++I + G  +       G +D
Sbjct: 186 RNNVVLSRR--AVIELSQGEERAKLLETLTEGAVVQGVVKNITDYGAFVDL-----GGID 238

Query: 226 -IFHLQNTFPTTNWKNDYNQH------KKVNARILFVDPTSRAVGLTL-----NPYLLHN 273
            + H+ +      W+   +        +++ A++L  D     V L +     +P++  +
Sbjct: 239 GLLHITDMA----WRRVRHPTEVLQVGQEITAKVLKFDQEKNRVSLGIKQLGEDPWVGIS 294

Query: 274 RAPPSHV----KVGDIYDQSKVVRVDRGL-GLL----LDIPSTPVSTPAYVTISDVAEEE 324
           R  P +     KV +I D    V ++ G+ GL+    +D  +  V+    V++ D  E  
Sbjct: 295 RRYPQNTRMFGKVTNITDYGAFVEIEPGIEGLVHVSEMDWTNKNVNPSKVVSLGDEVEVM 354

Query: 325 VRKLEKKYKEGSCVRVRI-LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 383
           V ++++        R RI LG +           A+ ++     H   +    VKG + +
Sbjct: 355 VLEIDED-------RRRISLGMKQTH--------ANPWQEFSENH---RRNDRVKGSIKS 396

Query: 384 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVLG--VKSKRIT 437
           +  FG  +  PGG+  L    H+S+    K G    + FK G E+   VLG  V+ +RI+
Sbjct: 397 ITDFGVFIGLPGGIDGLV---HLSDLSWNKSGEEAVRDFKKGDEVEAVVLGIDVERERIS 453

Query: 438 VTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 496
           +  K+     +    +++A   D+  +  G +T ++  G  ++    V+G+   SE+  D
Sbjct: 454 LGIKQL----EGDPFTNFASTHDKGSVVTGTVTSVDARGATIQIEPEVEGYLRASEISRD 509

Query: 497 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG--SLVSGVVDV 554
              +  +    G  V+  I++    +R I LS   +    + D + ++   S VSG  ++
Sbjct: 510 RVEDARTHLSEGATVESMIINIDRKNRSIALSIKARENADTADAMQRMAESSAVSGTTNL 569


>gi|227872165|ref|ZP_03990534.1| possible ribosomal protein S1 [Oribacterium sinus F0268]
 gi|227841994|gb|EEJ52255.1| possible ribosomal protein S1 [Oribacterium sinus F0268]
          Length = 367

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 179/394 (45%), Gaps = 72/394 (18%)

Query: 1078 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1134
            L+E  +  H G+ VTG V+S+  ++  L +  +   DGI  ++ D S DN   + T +  
Sbjct: 10   LEESLKSVHAGEIVTGTVISVKPDEIALNIGYK--SDGIMTRS-DYSADNQLDLTTVVSV 66

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD +  ++ K+  G G +V+     L  +    EL+                     ++E
Sbjct: 67   GDEIECKVKKVNDGEGQVVLSHRDALQSKAS-EELRK-------------------AFEE 106

Query: 1195 GQFVKCKVLEISRTVRGTFHVELS-----LRSSLDGMSSTNSSDLS----TDVD------ 1239
               +  KV+++   V+G  +VE+      + +SL  +S +   DL+     D+       
Sbjct: 107  NAILTGKVVQV---VKGGLNVEVDGARIFVPASL--VSDSFERDLNKYQGQDIQFVITEF 161

Query: 1240 TPGK------------------HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1281
             P K                  H +   +L    I  G VKN+T  G FI L    D  +
Sbjct: 162  NPAKRRIIGDRKQIMSAMKKEQHDKLFSELKEGDIRTGVVKNLTDFGAFIDLG-GADGLL 220

Query: 1282 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1341
             +S +S G +E+P+K F  G+ V   VL  E   +R+ +T K  +      +E    S  
Sbjct: 221  HISEMSWGRIENPKKLFKPGQEV--EVLVKEISGERIALTRKFPNENPWKDAE----SKY 274

Query: 1342 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1401
             VG+IV G++ R+  +G FI + +  +  L HVS++S+DHV+    +   G++++ +++ 
Sbjct: 275  AVGEIVTGRVARMTDFGAFIEL-DKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVD 333

Query: 1402 VDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
            +D +  +ISL +K+   + + D   +  E  S+E
Sbjct: 334  LDVDNHKISLSIKALLPEEEGDVADVDVEAASEE 367



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 106/245 (43%), Gaps = 17/245 (6%)

Query: 290 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK-----YKEGSCVRVRILG 344
           KVV+V +G GL +++    +  PA + +SD  E ++ K + +       E +  + RI+G
Sbjct: 113 KVVQVVKG-GLNVEVDGARIFVPASL-VSDSFERDLNKYQGQDIQFVITEFNPAKRRIIG 170

Query: 345 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
            R        I+ A   E      S++K G +  G V  +  FGA +   GG   L  + 
Sbjct: 171 DRKQ------IMSAMKKEQHDKLFSELKEGDIRTGVVKNLTDFGAFIDL-GGADGLLHIS 223

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            MS   I  P K FK G E+   V  +  +RI +T K           S YA      I 
Sbjct: 224 EMSWGRIENPKKLFKPGQEVEVLVKEISGERIALTRKFPNENPWKDAESKYAVGE---IV 280

Query: 465 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            G + ++   G F+    G+      S++  D   +PS +   GQ ++ R++     + +
Sbjct: 281 TGRVARMTDFGAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHK 340

Query: 525 INLSF 529
           I+LS 
Sbjct: 341 ISLSI 345


>gi|440702750|ref|ZP_20883876.1| 30S ribosomal protein S1 [Streptomyces turgidiscabies Car8]
 gi|440275576|gb|ELP63980.1| 30S ribosomal protein S1 [Streptomyces turgidiscabies Car8]
          Length = 501

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 187/417 (44%), Gaps = 66/417 (15%)

Query: 1012 ELSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH---- 1061
            E++     + V++IG +  F    D +I     G  V G + KVD +  LL I       
Sbjct: 6    EITATTPQVAVNDIGDEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGV 65

Query: 1062 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1121
            + ++   +    +P+E+        +G  +   VL   KE K  RL+L   +        
Sbjct: 66   IPSRELSIKHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQY 112

Query: 1122 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            + +   ++    E  IV G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGK 170

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDT 1240
            +               ++ K++E+ +      +V LS R+ L+   S    + L+T    
Sbjct: 171  E---------------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT---- 208

Query: 1241 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1300
                      L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +
Sbjct: 209  ----------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEV 257

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGL 1359
            G+ V   VL V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G 
Sbjct: 258  GQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGA 312

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            F+ ++   + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 313  FVRVDE-GIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKEE-DGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|374990744|ref|YP_004966239.1| 30S ribosomal protein S1 [Streptomyces bingchenggensis BCW-1]
 gi|297161396|gb|ADI11108.1| 30S ribosomal protein S1 [Streptomyces bingchenggensis BCW-1]
          Length = 500

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-G 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|336426345|ref|ZP_08606355.1| hypothetical protein HMPREF0994_02361 [Lachnospiraceae bacterium
            3_1_57FAA_CT1]
 gi|336010780|gb|EGN40760.1| hypothetical protein HMPREF0994_02361 [Lachnospiraceae bacterium
            3_1_57FAA_CT1]
          Length = 390

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 94/170 (55%), Gaps = 8/170 (4%)

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E +E +    +V+G VKNVT  G FI L    D  + +S +S G VE P+K F +G  V 
Sbjct: 186  ELLERIHEGDVVEGTVKNVTDFGAFIDLG-GADGLLHISEMSWGRVEHPKKVFKVGDQVT 244

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
             ++  +     ++ +++K  D+        N      VG++V G++ R+  +G F+ +E 
Sbjct: 245  VQIKEIN--GNKIALSMKFDDANPWK----NAAEKYAVGNVVTGKVARMTDFGAFVELE- 297

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
              +  L HVS+++++HVD    + + GE++  K++  ++E ++ISL +K+
Sbjct: 298  PGIDALLHVSQIAKEHVDKPSDVLKTGEEINAKVVDFNEEDKKISLSIKA 347



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 4/159 (2%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +  G VV+G V  V  FGA +   GG   L  +  MS   +  P K FKVG ++  ++  
Sbjct: 191 IHEGDVVEGTVKNVTDFGAFIDL-GGADGLLHISEMSWGRVEHPKKVFKVGDQVTVQIKE 249

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           +   +I ++ K             YA      +  G + ++   G FV    G+      
Sbjct: 250 INGNKIALSMKFDDANPWKNAAEKYAVGN---VVTGKVARMTDFGAFVELEPGIDALLHV 306

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           S++  +   +PS +   G+ +  +++      ++I+LS 
Sbjct: 307 SQIAKEHVDKPSDVLKTGEEINAKVVDFNEEDKKISLSI 345



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 41/192 (21%)

Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
           IH   VV G V N+ + G F+  LG   G    S+   G+     K + VG  V   I +
Sbjct: 191 IHEGDVVEGTVKNVTDFGAFID-LGGADGLLHISEMSWGRVEHPKKVFKVGDQVTVQIKE 249

Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIG 750
           +N    +I LS+K    +                               W    E + +G
Sbjct: 250 ING--NKIALSMKFDDANP------------------------------WKNAAEKYAVG 277

Query: 751 SVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKA 805
           +V+ GKV    DFG  V  E   D    ++     H       +++G  I A ++D  + 
Sbjct: 278 NVVTGKVARMTDFGAFVELEPGIDALLHVSQIAKEHVDKPSDVLKTGEEINAKVVDFNEE 337

Query: 806 ERLVDLSLKTVF 817
           ++ + LS+K + 
Sbjct: 338 DKKISLSIKAML 349


>gi|374579676|ref|ZP_09652770.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
            [Desulfosporosinus youngiae DSM 17734]
 gi|374415758|gb|EHQ88193.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
            [Desulfosporosinus youngiae DSM 17734]
          Length = 659

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 100/442 (22%), Positives = 196/442 (44%), Gaps = 54/442 (12%)

Query: 994  ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC-DVSIGQRVTGYVYKVDNE 1052
            A + A ++ PD     + E+  K + +   E+      + C ++  G RVTG V K+  E
Sbjct: 252  AGLTAGASTPDW---IIEEVYKKMTEMNEQEMDMSAWVDSCPELHQGTRVTGTVVKITRE 308

Query: 1053 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
               + I    K +  I  +    ++    +    IG  +T  VL +  E+    L  R  
Sbjct: 309  EIFVDIG--WKCEGVIPINELSATKKTSPEDTVAIGDQITAVVLRVENEEGHTVLSKRKA 366

Query: 1113 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1172
             +       + + + ++      + +   + +++ G  GLVV +G  L G V        
Sbjct: 367  DE-------EGAKERLEKIAESKEEIQAEVVEVVKG--GLVVDVG--LRGFV-------- 407

Query: 1173 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1232
                P S    G  + L+ +  GQ ++ ++++     R    V LS +  L+   +   +
Sbjct: 408  ----PASQIQPGYVEDLNQF-LGQTLRLRMIDYDPAKR---KVVLSQKVILEEERAIKRT 459

Query: 1233 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1292
             L             +E L    +V G V+ +   G FI +   +D  + +S+++   ++
Sbjct: 460  QL-------------LETLKEGDVVSGTVRRMADFGAFIDIG-GIDGLLHISDMAYTRIK 505

Query: 1293 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1352
             P +   IG  V  +VL +EP S +V + LK        Q+ +N      VG IV G++ 
Sbjct: 506  HPSEILTIGDEVEVQVLKLEPQSGKVSLGLKQLKESPWEQASVN----FPVGSIVNGKVV 561

Query: 1353 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1412
            R+ S+G F+ +    + GL H+S+L++  V+ +E + + G+ V VK++    E++R+SL 
Sbjct: 562  RITSFGAFVGL-GEGVDGLVHISQLADHRVNKVEDVVKVGDMVSVKVMDCKPEEKRMSLS 620

Query: 1413 MKSSYFKNDA--DNLQMSSEEE 1432
            ++ +   ++   DN  ++S+ E
Sbjct: 621  IREAIADSNKEIDNQALASQSE 642



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 152/356 (42%), Gaps = 39/356 (10%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G  V G V+ +      V      + + P+  +S  +   P     +G ++   VL V++
Sbjct: 295 GTRVTGTVVKITREEIFVDIGWKCEGVIPINELSATKKTSPEDTVAIGDQITAVVLRVEN 354

Query: 434 KR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           +     ++ +K   +     L   AE+ + +     + ++ K G  V    G++GF P S
Sbjct: 355 EEGHTVLSKRKADEEGAKERLEKIAESKEEI--QAEVVEVVKGGLVVDV--GLRGFVPAS 410

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPTRVSEDDLVK 543
           ++   PG        +GQ ++ R++   PA R++ LS          +K T++ E   +K
Sbjct: 411 QI--QPGYVEDLNQFLGQTLRLRMIDYDPAKRKVVLSQKVILEEERAIKRTQLLE--TLK 466

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEF 599
            G +VSG V  +      + +   G   G +   H++D     ++H +    ++  G E 
Sbjct: 467 EGDVVSGTVRRMADFGAFIDI---GGIDGLL---HISDMAYTRIKHPS---EILTIGDEV 517

Query: 600 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH--PNSVVHGYVCNIIETGCFVRF 656
           + Q+L L+ +S  + L  K       ++ P + + ++    S+V+G V  I   G FV  
Sbjct: 518 EVQVLKLEPQSGKVSLGLK-----QLKESPWEQASVNFPVGSIVNGKVVRITSFGAFVGL 572

Query: 657 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
              + G    S+  D +   +     VG  V   ++D   E  R++LS++++   S
Sbjct: 573 GEGVDGLVHISQLADHRVNKVEDVVKVGDMVSVKVMDCKPEEKRMSLSIREAIADS 628



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 154/385 (40%), Gaps = 63/385 (16%)

Query: 633  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 692
             +H  + V G V  I     FV    +  G  P ++    ++     T  +G  + + +L
Sbjct: 291  ELHQGTRVTGTVVKITREEIFVDIGWKCEGVIPINELSATKKTSPEDTVAIGDQITAVVL 350

Query: 693  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 752
             V +E G   LS +++     D    +E     EKIA    SK                 
Sbjct: 351  RVENEEGHTVLSKRKA-----DEEGAKERL---EKIA---ESKEE--------------- 384

Query: 753  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-----GSVIQAAILDVAKAER 807
            I+ +V E    G+VV       + GF+   Q+    VE      G  ++  ++D   A+R
Sbjct: 385  IQAEVVEVVKGGLVVDV----GLRGFVPASQIQPGYVEDLNQFLGQTLRLRMIDYDPAKR 440

Query: 808  LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 867
             V LS K +            +A K+ +  E  K+  V   V+  V  + +    + +  
Sbjct: 441  KVVLSQKVIL--------EEERAIKRTQLLETLKEGDV---VSGTVRRMADFGAFIDIGG 489

Query: 868  YNHSIGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 925
             +   G   +SD  Y   K P +    G  V   V+ L   S  G++ L LK + E    
Sbjct: 490  ID---GLLHISDMAYTRIKHPSEILTIGDEVEVQVLKLEPQS--GKVSLGLKQLKE---- 540

Query: 926  SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 985
             S   +   ++ VGS+V  ++  I      +  G G  G +HI+++ D + N VE++   
Sbjct: 541  -SPWEQASVNFPVGSIVNGKVVRITSFGAFVGLGEGVDGLVHISQLADHRVNKVEDV--- 596

Query: 986  FKIGQTVTARIIAKSNKPDMKKSFL 1010
             K+G  V+ +++    KP+ K+  L
Sbjct: 597  VKVGDMVSVKVM--DCKPEEKRMSL 619



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 12/99 (12%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            IV G V  +TS G F+ L   +D  V +S L+D  V   E    +G +V+ +V+  +P  
Sbjct: 555  IVNGKVVRITSFGAFVGLGEGVDGLVHISQLADHRVNKVEDVVKVGDMVSVKVMDCKPEE 614

Query: 1316 KRVEVTLKTS---------DSRTASQSEINNLSNLHVGD 1345
            KR+ ++++ +         +   ASQSEI  ++   +GD
Sbjct: 615  KRMSLSIREAIADSNKEIDNQALASQSEIKPVT---IGD 650



 Score = 43.9 bits (102), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 21/219 (9%)

Query: 241 DYNQH--KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVR 293
           D NQ   + +  R++  DP  R V L+    L   RA         +K GD+   S  VR
Sbjct: 419 DLNQFLGQTLRLRMIDYDPAKRKVVLSQKVILEEERAIKRTQLLETLKEGDVV--SGTVR 476

Query: 294 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG--- 350
                G  +DI          + ISD+A   ++   +    G  V V++L      G   
Sbjct: 477 RMADFGAFIDIGGID----GLLHISDMAYTRIKHPSEILTIGDEVEVQVLKLEPQSGKVS 532

Query: 351 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 410
           L    LK S +E       +   G +V GKV+ + SFGA V    GV  L  +  +++  
Sbjct: 533 LGLKQLKESPWEQ---ASVNFPVGSIVNGKVVRITSFGAFVGLGEGVDGLVHISQLADHR 589

Query: 411 IVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKS 447
           + K     KVG  +  +V+  K   KR++++ ++ +  S
Sbjct: 590 VNKVEDVVKVGDMVSVKVMDCKPEEKRMSLSIREAIADS 628


>gi|440776925|ref|ZP_20955754.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            S5]
 gi|436722913|gb|ELP46799.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            S5]
          Length = 435

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 126/268 (47%), Gaps = 39/268 (14%)

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
            GGL++ IG   +      E++ +    P  G +               ++ K++E+ +  
Sbjct: 91   GGLILDIGLRGFLPASLVEMRRVRDLQPYIGKE---------------IEAKIIELDKN- 134

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
                +V LS R+ L+   S   S+              +  L    I +G V ++ + G 
Sbjct: 135  --RNNVVLSRRAWLEQTQSEVRSEF-------------LNQLQKGAIRKGVVSSIVNFGA 179

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +    
Sbjct: 180  FVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKAT---- 234

Query: 1330 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
              +    + +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +
Sbjct: 235  -QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQV 292

Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKSS 1416
               G+   VK++ +D E+RRISL +K +
Sbjct: 293  VAVGDDAMVKVIDIDLERRRISLSLKQA 320



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 161 LQKGAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 219

Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++A      I  G +TK+   G FVR   G++G  
Sbjct: 220 VDMDRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLV 276

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL       P  +  VG     +++      RRI+LS 
Sbjct: 277 HISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSL 317



 Score = 44.3 bits (103), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 138/346 (39%), Gaps = 58/346 (16%)

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDL 541
           +G  P  EL +    +P+ +  VG  V+  +++      R+ LS      +    + + L
Sbjct: 15  EGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEAL 74

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKP--GY 597
            +    V G V  V    +++ +  +G+   ++              M+ V  ++P  G 
Sbjct: 75  KEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL------------VEMRRVRDLQPYIGK 122

Query: 598 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVR 655
           E + +++ LD   +N++LS +  L  +  ++ S+  + +   ++  G V +I+  G FV 
Sbjct: 123 EIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVD 182

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
            LG + G    S+         S+   VG  V   +LDV+ +  R++LSLK +       
Sbjct: 183 -LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLK-ATQEDPWR 240

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
            F + H                           IG ++ GKV +   FG  V  EE   +
Sbjct: 241 HFARTH--------------------------AIGQIVPGKVTKLVPFGAFVRVEE--GI 272

Query: 776 YGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLK 814
            G +   +LA   VE        G      ++D+    R + LSLK
Sbjct: 273 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLK 318



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 140/330 (42%), Gaps = 31/330 (9%)

Query: 398 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSY 455
           + + P   +S    V P +   VG E+   VL  + K  R+ ++ K+   +     + + 
Sbjct: 15  EGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEAL 74

Query: 456 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS--ELGLDPGCEPSSMYHVGQVVKC 513
            E  + +   G + ++ K G  +    G++GF P S  E+      +P    ++G+ ++ 
Sbjct: 75  KEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPASLVEMRRVRDLQP----YIGKEIEA 126

Query: 514 RIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAK 567
           +I+      +++  SRR  L       R    + ++ G++  GVV  +      V +   
Sbjct: 127 KIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDL--- 183

Query: 568 GYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 625
           G   G +    L+  H++H +    V++ G E   ++L +D +   + LS K +  +  +
Sbjct: 184 GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWR 240

Query: 626 QLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 684
                 +  H    +V G V  ++  G FVR    + G    S+  +       +   VG
Sbjct: 241 HF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVG 296

Query: 685 QSVRSNILDVNSETGRITLSLKQSCCSSTD 714
                 ++D++ E  RI+LSLKQ+    T+
Sbjct: 297 DDAMVKVIDIDLERRRISLSLKQANEDYTE 326


>gi|331002422|ref|ZP_08325940.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330410238|gb|EGG89672.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 368

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 179/394 (45%), Gaps = 72/394 (18%)

Query: 1078 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1134
            L E  +  H G+ V G V+ + +++ +L +  +   DGI  ++ + SNDN   ++T ++ 
Sbjct: 10   LDESFKTLHTGEVVNGKVIDVKEDQIILNVGFKS--DGIITRS-EYSNDNSLDLRTVVNV 66

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD +  ++ KI  G G +++      Y R+                 D G       ++ 
Sbjct: 67   GDDMEAKVLKINDGEGQVLLS-----YKRL---------------AQDRGNKKLEDAFNN 106

Query: 1195 GQFVKCKVLEISRTVRGTFHV-----ELSLRSSLDGMSSTNSSDLSTDVDTP-------- 1241
             + +  KV+++   V G   V      + + +SL  +S T   DLS   DT         
Sbjct: 107  HEVLTGKVIQV---VEGGLSVVVEDARVFIPASL--VSDTFERDLSKYKDTEIEFVITEF 161

Query: 1242 ----------------GKHLEK----IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1281
                             K  E+     E ++P  +++G VKNVT  G F+ L    D  +
Sbjct: 162  NPKRRRIIGDRKQLLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVDLG-GADGLL 220

Query: 1282 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1341
             +S +S G VE+P+K F  G+ V   +  +    +++ +++K  D      +E       
Sbjct: 221  HISEMSWGRVENPKKVFKSGETVTAFIKDIS--GEKIALSMKFPDQNPWLDAE----EKF 274

Query: 1342 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1401
              G++V G++ R+  +G F+ I N  +  L HVS++S DHV+    + + G++V+  I++
Sbjct: 275  ARGNVVKGRVARMTDFGAFVEISN-GVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVE 333

Query: 1402 VDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
             ++  ++ISL +K+    N+    + +   ES+E
Sbjct: 334  FNEADKKISLSIKALTQANEELEKENARNSESEE 367



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 17/244 (6%)

Query: 290 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSCVRVRILG 344
           KV++V  G GL + +    V  PA + +SD  E ++ K     +E    E +  R RI+G
Sbjct: 113 KVIQVVEG-GLSVVVEDARVFIPASL-VSDTFERDLSKYKDTEIEFVITEFNPKRRRIIG 170

Query: 345 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 404
            R        +L A   E        + PG V++G V  V  FGA V   GG   L  + 
Sbjct: 171 DRKQ------LLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVDL-GGADGLLHIS 223

Query: 405 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464
            MS   +  P K FK G  +   +  +  ++I ++ K       L     +A      + 
Sbjct: 224 EMSWGRVENPKKVFKSGETVTAFIKDISGEKIALSMKFPDQNPWLDAEEKFARGN---VV 280

Query: 465 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524
            G + ++   G FV   NGV      S++  D   +PS +  VG  V+  I+    A ++
Sbjct: 281 KGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKK 340

Query: 525 INLS 528
           I+LS
Sbjct: 341 ISLS 344



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 138/342 (40%), Gaps = 49/342 (14%)

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDDL 541
           G   RSE   D   +  ++ +VG  ++ +++       ++ LS+      +  +  ED  
Sbjct: 45  GIITRSEYSNDNSLDLRTVVNVGDDMEAKVLKINDGEGQVLLSYKRLAQDRGNKKLEDAF 104

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
                L   V+ VV     VV   A+ +    IP   ++D  E    +        EF  
Sbjct: 105 NNHEVLTGKVIQVVEGGLSVVVEDARVF----IPASLVSDTFERD--LSKYKDTEIEF-- 156

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           ++   N     ++  +  L+ + ++    A    I P  V+ G V N+ + G FV  LG 
Sbjct: 157 VITEFNPKRRRIIGDRKQLLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVD-LGG 215

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
             G    S+   G+  +  K +  G++V + I D++ E  +I LS+K          F  
Sbjct: 216 ADGLLHISEMSWGRVENPKKVFKSGETVTAFIKDISGE--KIALSMK----------FPD 263

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
           ++  L+ +                 E F  G+V++G+V    DFG  V      D    +
Sbjct: 264 QNPWLDAE-----------------EKFARGNVVKGRVARMTDFGAFVEISNGVDALLHV 306

Query: 780 T-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 816
           +     H +     ++ G  ++A I++  +A++ + LS+K +
Sbjct: 307 SQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKKISLSIKAL 348


>gi|78355554|ref|YP_387003.1| 30S ribosomal protein S1 [Desulfovibrio alaskensis G20]
 gi|78217959|gb|ABB37308.1| ribosomal protein S1 [Desulfovibrio alaskensis G20]
          Length = 574

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 157/349 (44%), Gaps = 34/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G +V GK   +  +G  V   GG+  L  +  MS   I  P +   +G EL  ++L    
Sbjct: 205 GQIVTGKAKNITEYGVFVDL-GGLDGLLHITDMSWKRIRHPKELVSLGQELELKILSFDR 263

Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
            S+++++  K+ +      I S Y E   RL  +G +T +  +G FV    GV+G    S
Sbjct: 264 DSQKVSLGMKQLVNDPWADITSKYPENA-RL--NGKVTNLVDYGAFVELEPGVEGLVHIS 320

Query: 492 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL----GS 546
           E+        PS M  VG  V+  I+   P  +RI+L   MK  + +  ++V      G+
Sbjct: 321 EMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLG--MKQVKPNPWEVVAEKYPEGT 378

Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 600
           ++ GV+  +T   + +     G   G     H++D     +  K +  P   ++      
Sbjct: 379 ILEGVIKNITEFGMFI-----GIEDGIDGLIHVSD----ISWTKKIRHPNELYNVGDTVQ 429

Query: 601 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 658
            ++L +D ES    L  K    +   ++P++    +P  ++V+G V NI + G FV    
Sbjct: 430 AKVLTVDQESEKFTLGVKQLTEDPWSKVPAN----YPVGTLVNGVVTNITDFGLFVEVEE 485

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
            + G    S+    +    S+ +  G ++++ ++ V++E  R+ LS+KQ
Sbjct: 486 GIEGLVHVSEISQKKVKSPSEMFKEGVTIQAKVIHVSAEERRLGLSIKQ 534



 Score = 73.2 bits (178), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 88/160 (55%), Gaps = 6/160 (3%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1314
            I++G +KN+T  G FI +   +D  + +S++S    +  P + + +G  V  +VL+V+  
Sbjct: 379  ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELYNVGDTVQAKVLTVDQE 438

Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
            S++  + +K       S+      +N  VG +V G +  +  +GLF+ +E   + GL HV
Sbjct: 439  SEKFTLGVKQLTEDPWSKVP----ANYPVGTLVNGVVTNITDFGLFVEVEE-GIEGLVHV 493

Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            SE+S+  V +   +++ G  ++ K++ V  E+RR+ L +K
Sbjct: 494  SEISQKKVKSPSEMFKEGVTIQAKVIHVSAEERRLGLSIK 533



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 11/175 (6%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  + ++ L    IV G  KN+T  G F+ L   LD  + ++++S   +  P++   +G+
Sbjct: 194  KRQDLLKTLEEGQIVTGKAKNITEYGVFVDLG-GLDGLLHITDMSWKRIRHPKELVSLGQ 252

Query: 1303 LVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
             +  ++LS +  S++V + +K   +D      S+    + L+      G++  +  YG F
Sbjct: 253  ELELKILSFDRDSQKVSLGMKQLVNDPWADITSKYPENARLN------GKVTNLVDYGAF 306

Query: 1361 ITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + +E   + GL H+SE+S    + +   + R G++V+V IL VD +K+RISLGMK
Sbjct: 307  VELE-PGVEGLVHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLGMK 360



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 140/615 (22%), Positives = 240/615 (39%), Gaps = 110/615 (17%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQF----PGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
            D++ G +VKG+V+ VD    +V       G + A       SEF+  +     KVG  +
Sbjct: 29  GDLEEGSIVKGEVVRVDGDYVLVDVNFKSEGQIAA-------SEFKDAEGNLAIKVGDTV 81

Query: 425 VFRVLGVKSKRITVT-----HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 479
              V        T+T      K+  V  KL  +   +E T    T G I +  K G  V 
Sbjct: 82  DVFVARKNEMEGTITLSFEKAKRMQVFDKLEEVQE-SEGT----TCGRIIRRIKGGYTVD 136

Query: 480 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKP 533
              GV+ F P S + L P  +  ++  V Q    R++      S++  SRR+ L      
Sbjct: 137 L-GGVEAFLPGSHVDLRPVPDMDAL--VNQEFDFRVLKINRRRSNVIVSRRVLLEEERDS 193

Query: 534 TRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHA 586
            R    DL+K    G +V+G    +T   V V +   G   G +   H+ D     + H 
Sbjct: 194 KR---QDLLKTLEEGQIVTGKAKNITEYGVFVDL---GGLDGLL---HITDMSWKRIRHP 244

Query: 587 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYV 644
              K ++  G E + ++L  D +S  + L  K  L+N      +D +  +P N+ ++G V
Sbjct: 245 ---KELVSLGQELELKILSFDRDSQKVSLGMK-QLVNDPW---ADITSKYPENARLNGKV 297

Query: 645 CNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITL 703
            N+++ G FV     + G    S+    ++    S+   VG  V   IL V+ +  RI+L
Sbjct: 298 TNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISL 357

Query: 704 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 763
            +KQ                           K N  E+   E +  G+++EG +    +F
Sbjct: 358 GMKQ--------------------------VKPNPWEVV-AEKYPEGTILEGVIKNITEF 390

Query: 764 GVVVSFEEHSDVYGFITHHQLAGAT--------VESGSVIQAAILDVAKAERLVDLSLKT 815
           G+ +  E+  D  G I    ++              G  +QA +L V +      L +K 
Sbjct: 391 GMFIGIEDGID--GLIHVSDISWTKKIRHPNELYNVGDTVQAKVLTVDQESEKFTLGVKQ 448

Query: 816 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 875
           +  D + +  +N                 V   VN +V  + +  L + + E    + + 
Sbjct: 449 LTEDPWSKVPANYP---------------VGTLVNGVVTNITDFGLFVEVEEGIEGLVHV 493

Query: 876 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 935
           S       K P + F  G ++ A V+ +  S+   RL L +K I + E     +  +   
Sbjct: 494 SEISQKKVKSPSEMFKEGVTIQAKVIHV--SAEERRLGLSIKQIKDDEERRRPKEFRSGP 551

Query: 936 YDVGSLVQAEITEIK 950
            + G     +I ++K
Sbjct: 552 AEAGGQTLGDILKLK 566



 Score = 44.3 bits (103), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 89/445 (20%), Positives = 176/445 (39%), Gaps = 68/445 (15%)

Query: 563 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 622
           Y +  G  +  +P  H+   L     M +++   ++F ++L ++   SN+++S +  L  
Sbjct: 133 YTVDLGGVEAFLPGSHV--DLRPVPDMDALVNQEFDF-RVLKINRRRSNVIVSRRVLLEE 189

Query: 623 SAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 681
                  D    +    +V G   NI E G FV  LG L G    +     +     +  
Sbjct: 190 ERDSKRQDLLKTLEEGQIVTGKAKNITEYGVFVD-LGGLDGLLHITDMSWKRIRHPKELV 248

Query: 682 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 741
            +GQ +   IL  + ++ +++L +KQ               L+ +  A + S     + L
Sbjct: 249 SLGQELELKILSFDRDSQKVSLGMKQ---------------LVNDPWADITSKYPENARL 293

Query: 742 KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGS 793
                        GKV    D+G  V  E    V G +   +++           V  G 
Sbjct: 294 N------------GKVTNLVDYGAFVELE--PGVEGLVHISEMSWTRKLRHPSQMVRVGD 339

Query: 794 VIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 853
            ++  IL V   ++ + L +K V          N      ++  E +        +  ++
Sbjct: 340 EVEVVILGVDPDKKRISLGMKQV--------KPNPWEVVAEKYPEGT-------ILEGVI 384

Query: 854 EIVKENYLVLSLPE-YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 912
           + + E  + + + +  +  I  + +S     + P + +  G +V A V+ +   S   + 
Sbjct: 385 KNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELYNVGDTVQAKVLTVDQESE--KF 442

Query: 913 LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 972
            L +K ++E   S     K  ++Y VG+LV   +T I    L ++   G  G +H++E++
Sbjct: 443 TLGVKQLTEDPWS-----KVPANYPVGTLVNGVVTNITDFGLFVEVEEGIEGLVHVSEIS 497

Query: 973 DDKSNVVENLFSNFKIGQTVTARII 997
             K   V++    FK G T+ A++I
Sbjct: 498 QKK---VKSPSEMFKEGVTIQAKVI 519


>gi|229166441|ref|ZP_04294197.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
 gi|228617015|gb|EEK74084.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
          Length = 382

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVNVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 130/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       V  KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VNVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|15618235|ref|NP_224520.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae CWL029]
 gi|15835850|ref|NP_300374.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae J138]
 gi|16752723|ref|NP_444990.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae AR39]
 gi|33241660|ref|NP_876601.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae TW-183]
 gi|6707741|sp|Q9Z8M3.1|RS1_CHLPN RecName: Full=30S ribosomal protein S1
 gi|4376592|gb|AAD18464.1| S1 Ribosomal Protein [Chlamydophila pneumoniae CWL029]
 gi|7189364|gb|AAF38281.1| ribosomal protein S1 [Chlamydophila pneumoniae AR39]
 gi|8978689|dbj|BAA98525.1| S1 ribosomal protein [Chlamydophila pneumoniae J138]
 gi|33236169|gb|AAP98258.1| ribosomal protein S1 [Chlamydophila pneumoniae TW-183]
          Length = 580

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 73/401 (18%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            +SIG+   G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVLGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHISEMSWVKNIV-------------DPSEVVNKGDEVEAIVL 361

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTERN--------PWDNIE--EKYPIGLHVNAEIKN 401

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGV 461

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K   S   ++ E    +    G ++ G + ++ ++G F+ ++N  + GL HVSELS+   
Sbjct: 462  KQLSSNPWNEIE----AMFPAGTVISGVVTKITAFGAFVELQN-GIEGLIHVSELSDKPF 516

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
              IE I   GE V  K++K+D + +++SL +K     N  D
Sbjct: 517  AKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNAYD 557



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 141/296 (47%), Gaps = 43/296 (14%)

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
             EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y
Sbjct: 132  EEGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY 175

Query: 1193 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
              G+  + K+L+I+   R   ++ +S R  L+    +  ++L             IE +S
Sbjct: 176  -VGKVCEFKILKINVERR---NIVVSRRELLEAERISKKAEL-------------IEQIS 218

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
                 +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+
Sbjct: 219  IGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVD 277

Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
                RV + LK  +       E         G  V+G+I ++  YG FI IE   + GL 
Sbjct: 278  KEKGRVALGLKQKEHNPWEDIE----KKYPPGKRVLGKIVKLLPYGAFIEIEE-GIEGLI 332

Query: 1373 HVSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            H+SE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +  +N  DN++
Sbjct: 333  HISEMSWVKNIVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTE-RNPWDNIE 386



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 431
           G+ V  ++  + ++GA V+   G++ L  +  MS  + V  P + FK G  +   +L V 
Sbjct: 392 GLHVNAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVD 451

Query: 432 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
            +SK+IT+  K+        I + +   T   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEAMFPAGT---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           SEL   P  +   +  +G+ V  +++   P  ++++LS
Sbjct: 509 SELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLS 546



 Score = 45.1 bits (105), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 140/350 (40%), Gaps = 32/350 (9%)

Query: 378 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 435
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGVVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGR 282

Query: 436 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 495
           + +  K+        I   Y      L   G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPGKRVL---GKIVKLLPYGAFIEIEEGIEGLIHISEMSW 339

Query: 496 DPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 550
                +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V+ 
Sbjct: 340 VKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTERNPWDNIEEKYPIGLHVNA 397

Query: 551 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 603
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGNSVEAVIL 448

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D ES  + L  K    N   ++    +     +V+ G V  I   G FV     + G 
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI---EAMFPAGTVISGVVTKITAFGAFVELQNGIEGL 505

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
              S+  D   A +     +G++V + ++ ++ +  +++LS+K+    + 
Sbjct: 506 IHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNA 555



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 95/477 (19%), Positives = 192/477 (40%), Gaps = 70/477 (14%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           + ++++PG ++KG V+ ++    +V    G+K+   +P MSEF  +   +   +GAE+  
Sbjct: 45  SDNEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLVLGAEVEV 99

Query: 427 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
            +   + +  ++ ++ +K   + +   + ++ E     I  G IT+  K G  V    G+
Sbjct: 100 YLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GM 155

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED--- 539
           + F P S++  D     +   +VG+V + +I+      R I +S   +++  R+S+    
Sbjct: 156 EAFLPGSQI--DNKKIKNLDDYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAEL 213

Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
            + + +G    GVV  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQISIGEYRKGVVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVLGKIVKLLPYGAF 321

Query: 654 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           +     + G    S+    +   D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNP 381

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVNAEIKNLTNYGAFVELEPG 414

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNE 471


>gi|315652055|ref|ZP_07905056.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
            [Lachnoanaerobaculum saburreum DSM 3986]
 gi|315485702|gb|EFU76083.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
            [Lachnoanaerobaculum saburreum DSM 3986]
          Length = 368

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 166/355 (46%), Gaps = 34/355 (9%)

Query: 1078 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1134
            L E  +  H G+ V G V+ + +++ +L +  +   DGI  ++ + SNDN   ++T +H 
Sbjct: 10   LDESFKTLHTGEVVNGKVIDVKEDQIILNVGFK--SDGIITRS-EYSNDNNLDLRTVVHV 66

Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
            GD +  ++ KI  G G +++        R       N  + D  +  +      +   D 
Sbjct: 67   GDEMEAKVLKINDGEGQVLLSYKKLAQDR------GNKKLEDAFNNKEVLTGKVVQVVDG 120

Query: 1195 GQFV---KCKVLEISRTVRGTFHVELSLRSSLD---GMSSTNSSDLSTDVDTPGKHLEKI 1248
            G  V     +V   +  V  TF  +LS     D    ++  N        D     L K 
Sbjct: 121  GLSVVVDDARVFIPASLVSDTFERDLSKYKDTDIEFVITEFNPRRRRIIGDRKQLLLAKK 180

Query: 1249 ED--------LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1300
            E+        ++P  +++G VKNVT  G F+ L    D  + +S +S G VE+P+K F  
Sbjct: 181  EEQKKALFDKITPGDVIEGTVKNVTDFGAFVDLG-GADGLLHISEMSWGRVENPKKVFKS 239

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
            G+ V   +  +    +++ +++K  D      +E         G++V G++ R+  +G F
Sbjct: 240  GEKVTAFIKDIS--GEKIALSMKFPDQNPWLDAE----EKFARGNVVKGRVARMTDFGAF 293

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            + I N  +  L HVS++S DHV+    + + G++V+  I++ ++ +++ISL +K+
Sbjct: 294  VEISN-GVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPEKKISLSIKA 347



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 106/245 (43%), Gaps = 19/245 (7%)

Query: 290 KVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSCVRVRIL 343
           KVV+V D GL +++D     V  PA + +SD  E ++ K     +E    E +  R RI+
Sbjct: 113 KVVQVVDGGLSVVVD--DARVFIPASL-VSDTFERDLSKYKDTDIEFVITEFNPRRRRII 169

Query: 344 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 403
           G R        +L A   E        + PG V++G V  V  FGA V   GG   L  +
Sbjct: 170 GDRKQ------LLLAKKEEQKKALFDKITPGDVIEGTVKNVTDFGAFVDL-GGADGLLHI 222

Query: 404 PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 463
             MS   +  P K FK G ++   +  +  ++I ++ K       L     +A      +
Sbjct: 223 SEMSWGRVENPKKVFKSGEKVTAFIKDISGEKIALSMKFPDQNPWLDAEEKFARGN---V 279

Query: 464 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 523
             G + ++   G FV   NGV      S++  D   +PS +  VG  V+  I+      +
Sbjct: 280 VKGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPEK 339

Query: 524 RINLS 528
           +I+LS
Sbjct: 340 KISLS 344



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 139/346 (40%), Gaps = 57/346 (16%)

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDDL 541
           G   RSE   D   +  ++ HVG  ++ +++       ++ LS+      +  +  ED  
Sbjct: 45  GIITRSEYSNDNNLDLRTVVHVGDEMEAKVLKINDGEGQVLLSYKKLAQDRGNKKLEDAF 104

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH------ATVMKSVIKP 595
                L   VV VV     VV   A+ +    IP   ++D  E        T ++ VI  
Sbjct: 105 NNKEVLTGKVVQVVDGGLSVVVDDARVF----IPASLVSDTFERDLSKYKDTDIEFVITE 160

Query: 596 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
                + ++ D +   LLL+ K       +Q  +    I P  V+ G V N+ + G FV 
Sbjct: 161 FNPRRRRIIGDRKQ--LLLAKK------EEQKKALFDKITPGDVIEGTVKNVTDFGAFVD 212

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
            LG   G    S+   G+  +  K +  G+ V + I D++ E  +I LS+K         
Sbjct: 213 -LGGADGLLHISEMSWGRVENPKKVFKSGEKVTAFIKDISGE--KIALSMK--------- 260

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
            F  ++  L+ +                 E F  G+V++G+V    DFG  V      D 
Sbjct: 261 -FPDQNPWLDAE-----------------EKFARGNVVKGRVARMTDFGAFVEISNGVDA 302

Query: 776 YGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 816
              ++     H +     ++ G  ++A I++  + E+ + LS+K +
Sbjct: 303 LLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPEKKISLSIKAL 348


>gi|166031925|ref|ZP_02234754.1| hypothetical protein DORFOR_01626 [Dorea formicigenerans ATCC 27755]
 gi|346306186|ref|ZP_08848348.1| hypothetical protein HMPREF9457_00057 [Dorea formicigenerans
            4_6_53AFAA]
 gi|166028378|gb|EDR47135.1| putative ribosomal protein S1 [Dorea formicigenerans ATCC 27755]
 gi|345905907|gb|EGX75642.1| hypothetical protein HMPREF9457_00057 [Dorea formicigenerans
            4_6_53AFAA]
          Length = 359

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 103/192 (53%), Gaps = 17/192 (8%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  E  E L     V+G VKNVT  G FI L   +D  + +S +S G VE+P+K F +G 
Sbjct: 183  KQKELFEKLHVGDTVEGVVKNVTDFGAFIDLG-GVDGLLHISEMSWGRVENPKKVFKVGD 241

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             +  +VL  +    ++ ++LK  +S   +    N   +  VG ++ G++ R+  +G F+ 
Sbjct: 242  EL--KVLVKDIHDTKIALSLKFPESNPWA----NAAEDYAVGTVITGKVARMTDFGAFVE 295

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1422
            +    +  L HVS++S+ HVD    + + GE+V  KI+ +++ +++ISL MK+       
Sbjct: 296  LA-PGVDALLHVSQISKAHVDKPSDVLKVGEEVTAKIVDLNEAEKKISLSMKA------- 347

Query: 1423 DNLQMSSEEESD 1434
              L+ + EE +D
Sbjct: 348  --LEAADEETAD 357



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 16/238 (6%)

Query: 297 GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK-----YKEGSCVRVRILGFRHLEGL 351
           G GL + +    V  PA + +SD  E+++ K + +       E +  R R++G R     
Sbjct: 119 GGGLSVVVDEARVFIPASL-VSDTYEKDLSKYQDQEIEFVISEFNPRRNRVIGDRR---- 173

Query: 352 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 411
              +L A   E        +  G  V+G V  V  FGA +   GGV  L  +  MS   +
Sbjct: 174 --QLLVAEKAEKQKELFEKLHVGDTVEGVVKNVTDFGAFIDL-GGVDGLLHISEMSWGRV 230

Query: 412 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 471
             P K FKVG EL   V  +   +I ++ K             YA  T   +  G + ++
Sbjct: 231 ENPKKVFKVGDELKVLVKDIHDTKIALSLKFPESNPWANAAEDYAVGT---VITGKVARM 287

Query: 472 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
              G FV    GV      S++      +PS +  VG+ V  +I+    A ++I+LS 
Sbjct: 288 TDFGAFVELAPGVDALLHVSQISKAHVDKPSDVLKVGEEVTAKIVDLNEAEKKISLSM 345



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV- 428
           D   G V+ GKV  +  FGA V+   GV AL  +  +S+  + KP    KVG E+  ++ 
Sbjct: 273 DYAVGTVITGKVARMTDFGAFVELAPGVDALLHVSQISKAHVDKPSDVLKVGEEVTAKIV 332

Query: 429 -LGVKSKRITVTHK 441
            L    K+I+++ K
Sbjct: 333 DLNEAEKKISLSMK 346


>gi|317497528|ref|ZP_07955847.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Lachnospiraceae
            bacterium 5_1_63FAA]
 gi|316895211|gb|EFV17374.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Lachnospiraceae
            bacterium 5_1_63FAA]
          Length = 632

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 96/173 (55%), Gaps = 8/173 (4%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  E  E +   M V+G VKNVT  G FI L    D  + +S +S G VE+P+K F IG 
Sbjct: 458  KQKELFEKIEVGMKVEGVVKNVTDFGAFIDLG-GADGLLHISEMSWGRVENPKKVFNIGD 516

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             V   VL  +   +++ ++LK  +     ++E        VG +V G++ R+  +G F+ 
Sbjct: 517  KVT--VLIKDIQGEKIALSLKFPEENPWLKAE----EKYKVGSVVTGKVARMTDFGAFVE 570

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            +E + +  L HVS+++++H+D    +   G++++ K++   K+ ++ISL MK+
Sbjct: 571  LE-SGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSMKA 622



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 16/240 (6%)

Query: 294 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE 349
           +D GL +L  I    V  PA + +SD  E +++K E     G  +   I  F    R + 
Sbjct: 393 LDGGLSVL--IEEARVFIPASL-VSDSYERDLKKYE-----GQEIEFVISEFNPRKRRVI 444

Query: 350 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 409
           G    +L A+  E        ++ GM V+G V  V  FGA +   GG   L  +  MS  
Sbjct: 445 GDRKQLLVAAKKEKQKELFEKIEVGMKVEGVVKNVTDFGAFIDL-GGADGLLHISEMSWG 503

Query: 410 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 469
            +  P K F +G ++   +  ++ ++I ++ K       L     Y   +   +  G + 
Sbjct: 504 RVENPKKVFNIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAEEKYKVGS---VVTGKVA 560

Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           ++   G FV   +G+      S++  +   +PS +  VGQ ++ +++      ++I+LS 
Sbjct: 561 RMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSM 620



 Score = 44.3 bits (103), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 35/182 (19%)

Query: 640 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 699
           V G V N+ + G F+  LG   G    S+   G+  +  K + +G  V   I D+  E  
Sbjct: 472 VEGVVKNVTDFGAFID-LGGADGLLHISEMSWGRVENPKKVFNIGDKVTVLIKDIQGE-- 528

Query: 700 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 759
           +I LSLK          F +E+                   LK  E + +GSV+ GKV  
Sbjct: 529 KIALSLK----------FPEEN-----------------PWLKAEEKYKVGSVVTGKVAR 561

Query: 760 SNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
             DFG  V  E   D    ++     H       +  G  I+A ++D  K ++ + LS+K
Sbjct: 562 MTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSMK 621

Query: 815 TV 816
            +
Sbjct: 622 AL 623


>gi|84515230|ref|ZP_01002592.1| 30S ribosomal protein S1 [Loktanella vestfoldensis SKA53]
 gi|84510513|gb|EAQ06968.1| 30S ribosomal protein S1 [Loktanella vestfoldensis SKA53]
          Length = 552

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 173/416 (41%), Gaps = 70/416 (16%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1094
            GQ V G V  +    A + +   +   L + D A+     PSE+        IG+ +   
Sbjct: 191  GQEVDGVVKNITEYGAFVDLG-GVDGLLHVTDMAWRRVNHPSEI------LAIGETIKVQ 243

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            V+ INKE   + L ++  Q+           D ++     G +  GR++ I     G  V
Sbjct: 244  VIKINKETHRISLGMKQLQED--------PWDAVEAKFSLGSVHQGRVTNITDY--GAFV 293

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
            ++   + G VH +E+           + +    P       Q V+  VLEI    R    
Sbjct: 294  ELEAGVEGLVHVSEMS----------WTKKNVHPGKIVSTSQEVEVMVLEIDSAKR---- 339

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
                 R SL G+  T  +      +T   H E  E       V+G VKN+T  G FI L 
Sbjct: 340  -----RVSL-GLKQTQRNPWEVFAET---HPEGTE-------VEGEVKNITEFGLFIGLE 383

Query: 1275 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
              +D  V LS+L+ DG  E    +F  G +V  +V  V+   +R+ +++K  DS   + +
Sbjct: 384  GDIDGMVHLSDLTWDGRGEDVIGDFRKGDMVKAKVAEVDVEKERISLSIKALDSDPFADA 443

Query: 1334 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  +  G I+  ++ ++E  G  I +E   +      S+LS D  +     + AG+
Sbjct: 444  ----IGGVKRGSIITVEVTKIEDGG--IEVEYEGMKSFIRRSDLSRDRAEQRPERFGAGD 497

Query: 1394 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1449
            KV V++  +D + R++ L +K+                E  EA+E+ GS +  + L
Sbjct: 498  KVDVRVTNIDSKTRKLGLSIKAREIA------------EEKEAVEQFGSSDSGASL 541



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 34/215 (15%)

Query: 1258 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR------VLSV 1311
            QG V N+T  G F+ L   ++  V +S +S       +K    GK+V+        VL +
Sbjct: 280  QGRVTNITDYGAFVELEAGVEGLVHVSEMS-----WTKKNVHPGKIVSTSQEVEVMVLEI 334

Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVG 1370
            +   +RV + LK +      ++     +  H  G  V G++K +  +GLFI +E  ++ G
Sbjct: 335  DSAKRRVSLGLKQT-----QRNPWEVFAETHPEGTEVEGEVKNITEFGLFIGLEG-DIDG 388

Query: 1371 LCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1429
            + H+S+L+ D   +++   +R G+ VK K+ +VD EK RISL +K+              
Sbjct: 389  MVHLSDLTWDGRGEDVIGDFRKGDMVKAKVAEVDVEKERISLSIKAL------------- 435

Query: 1430 EEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1464
              +SD   + +G   R S++      ++D  +E E
Sbjct: 436  --DSDPFADAIGGVKRGSIITVEVTKIEDGGIEVE 468



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 9/176 (5%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            +  E I +L+    V G VKN+T  G F+ L   +D  + +++++   V  P +   IG+
Sbjct: 180  QRAEVIGNLTEGQEVDGVVKNITEYGAFVDLG-GVDGLLHVTDMAWRRVNHPSEILAIGE 238

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             +  +V+ +   + R+ + +K          E    +   +G +  G++  +  YG F+ 
Sbjct: 239  TIKVQVIKINKETHRISLGMKQLQEDPWDAVE----AKFSLGSVHQGRVTNITDYGAFVE 294

Query: 1363 IENTNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL HVSE+S     N+    I    ++V+V +L++D  KRR+SLG+K +
Sbjct: 295  LE-AGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLGLKQT 348



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%)

Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
            +SR   ++E+  + NL  G  V G +K +  YG F+ +   +  GL HV++++   V++ 
Sbjct: 175  ESRAEQRAEV--IGNLTEGQEVDGVVKNITEYGAFVDLGGVD--GLLHVTDMAWRRVNHP 230

Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              I   GE +KV+++K++KE  RISLGMK
Sbjct: 231  SEILAIGETIKVQVIKINKETHRISLGMK 259



 Score = 57.4 bits (137), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 149/349 (42%), Gaps = 49/349 (14%)

Query: 377 VKGKVIAVDSFGAIVQFPGG------VKALCPLPHMSE-FEIVKPGKKFKVGAELVFRVL 429
           VKG    VD  GA+   PG       V+   PL +M + F+I+K  ++         R  
Sbjct: 115 VKGG-FTVDLGGAVAFLPGSQVDVRPVRDAGPLMNMKQPFQILKMDRR---------RGN 164

Query: 430 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 489
            V S+R  +   +   + +  ++ +  E  +     G +  I ++G FV    GV G   
Sbjct: 165 IVVSRRAILEESRA--EQRAEVIGNLTEGQE---VDGVVKNITEYGAFVDL-GGVDGLLH 218

Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LG 545
            +++       PS +  +G+ +K +++     + RI+L   MK  +    D V+    LG
Sbjct: 219 VTDMAWRRVNHPSEILAIGETIKVQVIKINKETHRISLG--MKQLQEDPWDAVEAKFSLG 276

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG-----YEFD 600
           S+  G V  +T     V + A          E L  H+   +  K  + PG      +  
Sbjct: 277 SVHQGRVTNITDYGAFVELEA--------GVEGLV-HVSEMSWTKKNVHPGKIVSTSQEV 327

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSV-VHGYVCNIIETGCFVRFLG 658
           +++VL+ +S+   +S     +   Q+ P +  +  HP    V G V NI E G F+   G
Sbjct: 328 EVMVLEIDSAKRRVSLG---LKQTQRNPWEVFAETHPEGTEVEGEVKNITEFGLFIGLEG 384

Query: 659 RLTGFAPRSKAV-DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
            + G    S    DG+  D+   +  G  V++ + +V+ E  RI+LS+K
Sbjct: 385 DIDGMVHLSDLTWDGRGEDVIGDFRKGDMVKAKVAEVDVEKERISLSIK 433



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 39/223 (17%)

Query: 601 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           Q+L +D    N+++S +  L  S A+Q      ++     V G V NI E G FV  LG 
Sbjct: 154 QILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLTEGQEVDGVVKNITEYGAFVD-LGG 212

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    +     +    S+   +G++++  ++ +N ET RI+L +KQ            
Sbjct: 213 VDGLLHVTDMAWRRVNHPSEILAIGETIKVQVIKINKETHRISLGMKQ------------ 260

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 779
                      LQ    +  E K    F +GSV +G+V    D+G  V  E  + V G +
Sbjct: 261 -----------LQEDPWDAVEAK----FSLGSVHQGRVTNITDYGAFVELE--AGVEGLV 303

Query: 780 THHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLK 814
              +++        G  V +   ++  +L++  A+R V L LK
Sbjct: 304 HVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLGLK 346



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 97/471 (20%), Positives = 192/471 (40%), Gaps = 37/471 (7%)

Query: 94  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-NSGIDVKPG 152
           +LL +   ++T  EG V+   V +IE    I+  G     G +     A      D+K G
Sbjct: 6   ALLNESFEMDTPAEGSVVKGKVIAIEAGQAIIDVGY-KMEGRIDLKEFANPGEAPDIKVG 64

Query: 153 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS--ILEN 210
             ++  +R ++  R    +S +     +   +  K  + +  V G +   RV+    ++ 
Sbjct: 65  DTVEVFLRQVENARGEAVISREMARREEAWDRLEKAYADEERVDGAIFG-RVKGGFTVDL 123

Query: 211 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 270
           G  ++FL      VD+  +++  P  N K  +        +IL +D     + ++    L
Sbjct: 124 GGAVAFLP--GSQVDVRPVRDAGPLMNMKQPF--------QILKMDRRRGNIVVSRRAIL 173

Query: 271 LHNRAPPSHVKVGDIYDQSKVVRVDRGL---GLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
             +RA      +G++ +  +V  V + +   G  +D+          + ++D+A   V  
Sbjct: 174 EESRAEQRAEVIGNLTEGQEVDGVVKNITEYGAFVDLGGVD----GLLHVTDMAWRRVNH 229

Query: 328 LEKKYKEGSCVRVRILGFR---HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 384
             +    G  ++V+++      H   L    L+   ++ +    +    G V +G+V  +
Sbjct: 230 PSEILAIGETIKVQVIKINKETHRISLGMKQLQEDPWDAV---EAKFSLGSVHQGRVTNI 286

Query: 385 DSFGAIVQFPGGVKALCPLPHMSEFEI-VKPGKKFKVGAELVFRVLGVKS--KRITVTHK 441
             +GA V+   GV+ L  +  MS  +  V PGK      E+   VL + S  +R+++  K
Sbjct: 287 TDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLGLK 346

Query: 442 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP-GCE 500
           +T          ++ E T+     G +  I + G F+     + G    S+L  D  G +
Sbjct: 347 QTQRNPWEVFAETHPEGTE---VEGEVKNITEFGLFIGLEGDIDGMVHLSDLTWDGRGED 403

Query: 501 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--VKLGSLVS 549
               +  G +VK ++        RI+LS     +    D +  VK GS+++
Sbjct: 404 VIGDFRKGDMVKAKVAEVDVEKERISLSIKALDSDPFADAIGGVKRGSIIT 454



 Score = 47.0 bits (110), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 110/488 (22%), Positives = 183/488 (37%), Gaps = 72/488 (14%)

Query: 361 FEGLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK- 416
           FE L+   F       G VVKGKVIA+++  AI+     ++    L      E   PG+ 
Sbjct: 4   FEALLNESFEMDTPAEGSVVKGKVIAIEAGQAIIDVGYKMEGRIDLK-----EFANPGEA 58

Query: 417 -KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 475
              KVG  +   +  V++ R      + + + + A         D     G I    K G
Sbjct: 59  PDIKVGDTVEVFLRQVENARGEAVISREMARREEAWDRLEKAYADEERVDGAIFGRVK-G 117

Query: 476 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMM 531
            F     G   F P S++ + P  +   + ++ Q  +     R   +I  SRR  L    
Sbjct: 118 GFTVDLGGAVAFLPGSQVDVRPVRDAGPLMNMKQPFQILKMDRRRGNIVVSRRAILEESR 177

Query: 532 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHAT 587
              R      +  G  V GVV  +T     V +   G   G +    +A    +H     
Sbjct: 178 AEQRAEVIGNLTEGQEVDGVVKNITEYGAFVDL---GGVDGLLHVTDMAWRRVNHPSEIL 234

Query: 588 VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVC 645
            +   IK      Q++ ++ E+  + L  K       Q+ P DA  +     SV  G V 
Sbjct: 235 AIGETIKV-----QVIKINKETHRISLGMK-----QLQEDPWDAVEAKFSLGSVHQGRVT 284

Query: 646 NIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
           NI + G FV     + G    S+ +   +     K     Q V   +L+++S   R++L 
Sbjct: 285 NITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLG 344

Query: 705 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 764
           LKQ+  +  +  F + H                G+E            +EG+V    +FG
Sbjct: 345 LKQTQRNPWEV-FAETH--------------PEGTE------------VEGEVKNITEFG 377

Query: 765 VVVSFEEHSDVYGFITHHQLA----GATV----ESGSVIQAAILDVAKAERLVDLSLKTV 816
           + +  E   D+ G +    L     G  V      G +++A + +V   +  + LS+K +
Sbjct: 378 LFIGLE--GDIDGMVHLSDLTWDGRGEDVIGDFRKGDMVKAKVAEVDVEKERISLSIKAL 435

Query: 817 FIDRFREA 824
             D F +A
Sbjct: 436 DSDPFADA 443


>gi|417643269|ref|ZP_12293329.1| 30S ribosomal protein S1 [Staphylococcus warneri VCU121]
 gi|445059617|ref|YP_007385021.1| 30S ribosomal protein S1 [Staphylococcus warneri SG1]
 gi|330686048|gb|EGG97671.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU121]
 gi|443425674|gb|AGC90577.1| 30S ribosomal protein S1 [Staphylococcus warneri SG1]
          Length = 392

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 22/192 (11%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            ++ L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE+   +G  V  +
Sbjct: 188  LDSLNAGDVIEGTVARLTNFGAFVDIG-GVDGLVHVSELSHQHVQSPEEVVSVGDKVNVK 246

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            V SVE  ++R+ +++K  D+     ++I      H  D++ G + R+ ++G F+ I    
Sbjct: 247  VKSVEKDTERISLSIK--DTLPTPFAQIK--GQFHENDVIEGTVVRLANFGAFVEIA-PG 301

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS------------ 1415
            + GL H+SE+   H+     +   G++V VKIL +D+E  R+SL +K+            
Sbjct: 302  VQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDVVESDA 361

Query: 1416 ----SYFKNDAD 1423
                SY  ND D
Sbjct: 362  STTQSYLNNDTD 373



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 89/168 (52%), Gaps = 6/168 (3%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
            E L  N +++  V  V   G  + + ++    V  S +S  ++E    +F  G+ +  +V
Sbjct: 103  EKLDNNEVIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIEDF-SDFE-GQTIKIKV 158

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
              ++P + RV ++ K  +       + + L +L+ GD++ G + R+ ++G F+ I   + 
Sbjct: 159  EELDPENNRVILSRKAVEQAENEVKKASLLDSLNAGDVIEGTVARLTNFGAFVDIGGVD- 217

Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             GL HVSELS  HV + E +   G+KV VK+  V+K+  RISL +K +
Sbjct: 218  -GLVHVSELSHQHVQSPEEVVSVGDKVNVKVKSVEKDTERISLSIKDT 264



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 26/261 (9%)

Query: 288 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 340
           ++KV  V +G GL++D+      P++ +ST      SD   + ++ K+E+   E + V  
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDFEGQTIKIKVEELDPENNRV-- 168

Query: 341 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
            IL  + +E     + KAS  + L         G V++G V  + +FGA V   GGV  L
Sbjct: 169 -ILSRKAVEQAENEVKKASLLDSL-------NAGDVIEGTVARLTNFGAFVDI-GGVDGL 219

Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 458
             +  +S   +  P +   VG ++  +V  V+  ++RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHQHVQSPEEVVSVGDKVNVKVKSVEKDTERISLSIKDTLPTPFAQIKGQFHEN 279

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
               +  G + ++   G FV    GVQG    SE+       P  +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGI 336

Query: 519 IPASRRINLSFMMKPTRVSED 539
              + R++LS  +K T  +ED
Sbjct: 337 DEENERVSLS--IKATLPNED 355



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 153/372 (41%), Gaps = 32/372 (8%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I KP +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAY 70

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDSGAYILSKRQLETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDV--G 128

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
            +GF P S +  D   E  S +  GQ +K ++    P + R+ LS   K    +E+++ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQTIKIKVEELDPENNRVILS--RKAVEQAENEVKK 184

Query: 544 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
                    G ++ G V  +T     V +   G   G +    L+   +H    + V+  
Sbjct: 185 ASLLDSLNAGDVIEGTVARLTNFGAFVDI---GGVDGLVHVSELSH--QHVQSPEEVVSV 239

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
           G + + ++  ++ ++  + LS K +L     Q+       H N V+ G V  +   G FV
Sbjct: 240 GDKVNVKVKSVEKDTERISLSIKDTLPTPFAQI---KGQFHENDVIEGTVVRLANFGAFV 296

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 711
                + G    S+          +    GQ V   IL ++ E  R++LS+K +  +   
Sbjct: 297 EIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDV 356

Query: 712 -STDASFMQEHF 722
             +DAS  Q + 
Sbjct: 357 VESDASTTQSYL 368


>gi|42780699|ref|NP_977946.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
 gi|3122814|sp|O06000.1|RS1H_BACC1 RecName: Full=30S ribosomal protein S1 homolog
 gi|2094771|emb|CAA70584.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
 gi|42736619|gb|AAS40554.1| ribosomal protein S1 [Bacillus cereus ATCC 10987]
          Length = 382

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 105/201 (52%), Gaps = 6/201 (2%)

Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
             +++   K  E I  L    +V+G V+ +T  G F+ +   +D  V +S +S   VE P 
Sbjct: 171  VELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQPS 229

Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1355
            +    G+ V  +VLSV+  ++R+ +++K +          N    +  GDI  G +KR+ 
Sbjct: 230  EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NIAGEVKAGDIREGIVKRLV 285

Query: 1356 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            ++G F+ I    + GL HVS+++  HV N   +   G++VKVK+L+V   ++RISL +K 
Sbjct: 286  TFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKE 344

Query: 1416 SYFKNDADNLQMSSEEESDEA 1436
            ++ +N+        E  +D A
Sbjct: 345  AFEENNVTEDYSQYEPNADSA 365



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
            GK +A +++ ++    RV ++ K          +   +S+L  GD+V G ++R+  +G F
Sbjct: 146  GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAF 205

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +   +  GL H+S++S + V+    +   G+KVKVK+L VD + +RISL +K++
Sbjct: 206  VNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAA 259



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   ++RI+++ K          ++   +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENIAGEVKAGD--IREGIVKRLVTFGAFVEILPGVEG 299

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 539
               S++       P+ +  +GQ VK +++    A +RI+LS     +   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAFEENNVTED 354



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 127/294 (43%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  IAGEVKAGDIREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEAFEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|317486319|ref|ZP_07945150.1| ribosomal protein S1 [Bilophila wadsworthia 3_1_6]
 gi|316922430|gb|EFV43685.1| ribosomal protein S1 [Bilophila wadsworthia 3_1_6]
          Length = 570

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 99/195 (50%), Gaps = 25/195 (12%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1314
            I++G +KN+T  G FI +   +D  + +S++S    +  P + F +G  V  +VL+V+  
Sbjct: 378  ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELFKVGDTVQAKVLTVDQE 437

Query: 1315 SKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
            S++  + +K  T D  T      N  +   VG +V G I  +  +GLF+ +E   + GL 
Sbjct: 438  SEKFTLGIKQLTEDPWT------NVPTAYPVGGLVKGIITNITDFGLFVEVEE-GIEGLV 490

Query: 1373 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1432
            HVSELS   V     +Y+ GE+++ KI+ V  E RR+ L +K           Q+  EEE
Sbjct: 491  HVSELSNKKVKTPAELYKEGEEIQAKIIHVSAEDRRLGLSIK-----------QLKDEEE 539

Query: 1433 SDEAIEEVGSYNRSS 1447
              +  E    Y+RS 
Sbjct: 540  RKKPRE----YSRSG 550



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 11/176 (6%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  + ++ L+   +V G  KN+T  G F+ L   LD  + ++++S   +  P +   +G+
Sbjct: 193  KRQDLLQTLAEGQVVTGKAKNITEYGVFVDLG-GLDGLLHITDMSWKRIRHPREMVTLGQ 251

Query: 1303 LVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
             +  +VLS +  +++V + LK    D      +     S  +      G++  +  YG F
Sbjct: 252  DLELKVLSFDKDNQKVSLGLKQLVPDPWQDITARFPEASRHN------GKVTNLVDYGAF 305

Query: 1361 ITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            + +E   + GL H+SE+S    + +   + R G++V+V IL VD EK+RISLGMK 
Sbjct: 306  VELE-PGVEGLVHISEMSWTRKLRHPSQMVRQGDEVEVVILGVDPEKKRISLGMKQ 360



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 191/468 (40%), Gaps = 84/468 (17%)

Query: 101 SLETVQE--GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 158
            LE VQE  G++    ++ I+  GY +  G      FLP       S +D++P   +  +
Sbjct: 109 QLEDVQEKNGVIKGRIMRRIKG-GYTVDLG--GVEAFLP------GSHVDLRPVPDMDAL 159

Query: 159 VRS--------IDRTRKVVYLSS----DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 206
           V          I+R R  V +S     + +  SK   +DL    +  L  G +V+ + ++
Sbjct: 160 VNQEYEFRVLKINRRRSNVIVSRRVLLEEERDSK--RQDL----LQTLAEGQVVTGKAKN 213

Query: 207 ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA------RILFVDPTSR 260
           I E GV +       G   + H+ +     +WK   +  + V        ++L  D  ++
Sbjct: 214 ITEYGVFVDL----GGLDGLLHITDM----SWKRIRHPREMVTLGQDLELKVLSFDKDNQ 265

Query: 261 AVGLTL-----NPYL-LHNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 311
            V L L     +P+  +  R P +   + KV ++ D    V ++ G+             
Sbjct: 266 KVSLGLKQLVPDPWQDITARFPEASRHNGKVTNLVDYGAFVELEPGV------------- 312

Query: 312 PAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFT 367
              V IS+++   ++R   +  ++G  V V ILG    +    L    +K + +E     
Sbjct: 313 EGLVHISEMSWTRKLRHPSQMVRQGDEVEVVILGVDPEKKRISLGMKQIKPNPWE---LV 369

Query: 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAE 423
                 G +++G +  +  FG  +    G+  L    H+S+    K    P + FKVG  
Sbjct: 370 GEKYPEGTILEGVIKNITEFGMFIGIEDGIDGLI---HVSDISWTKKIRHPNELFKVGDT 426

Query: 424 LVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 481
           +  +VL V  +S++ T+  K+        + ++Y       +  G IT I   G FV   
Sbjct: 427 VQAKVLTVDQESEKFTLGIKQLTEDPWTNVPTAYPVGG---LVKGIITNITDFGLFVEVE 483

Query: 482 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
            G++G    SEL       P+ +Y  G+ ++ +I+      RR+ LS 
Sbjct: 484 EGIEGLVHVSELSNKKVKTPAELYKEGEEIQAKIIHVSAEDRRLGLSI 531


>gi|336325470|ref|YP_004605436.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
 gi|336101452|gb|AEI09272.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
          Length = 488

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 172/383 (44%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVE------VGDEIDAL 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 138

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG---------------QEIEAKIIELDKHRN---N 180

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+
Sbjct: 282  WRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVGVGQ 340

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
               VK++ +D E+RRISL +K +
Sbjct: 341  DAMVKVIDIDLERRRISLSLKQA 363



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 166/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+  +       +   VGQ     ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|228907229|ref|ZP_04071090.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
 gi|228852450|gb|EEM97243.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
          Length = 382

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 178/394 (45%), Gaps = 64/394 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIIELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++            ++D+  K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-----------LELDSQKK--EAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHAAEKRISLSIKEALEENN 350



 Score = 41.6 bits (96), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 149/356 (41%), Gaps = 29/356 (8%)

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 538
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIIELDREKNRVILSHKAVVELELDSQKKEA 182

Query: 539 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 596
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 653
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
           V  L  + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAL 346


>gi|453051391|gb|EME98899.1| 30S ribosomal protein S1 [Streptomyces mobaraensis NBRC 13819 = DSM
            40847]
          Length = 501

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 187/416 (44%), Gaps = 66/416 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VSVGDQVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 375



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG ++   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDQVEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|331697654|ref|YP_004333893.1| RNA binding S1 domain-containing protein [Pseudonocardia
            dioxanivorans CB1190]
 gi|326952343|gb|AEA26040.1| RNA binding S1 domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 487

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 131/269 (48%), Gaps = 41/269 (15%)

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
            GGL++ IG   +      E++ +    P  G               + ++ K++E+ +  
Sbjct: 139  GGLILDIGLRGFLPASLVEMRRVRDLQPYVG---------------RKIEAKIIELDKN- 182

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
                +V LS R+ L+   S   S+              +  L+   + +G V +V + G 
Sbjct: 183  --RNNVVLSRRAWLEQTQSEVRSEF-------------LNQLARGQVRKGVVSSVVNFGA 227

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK      
Sbjct: 228  FVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLK------ 280

Query: 1330 ASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
            A+Q +   L +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E 
Sbjct: 281  ATQEDPWRLYARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQ 339

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + + G+   VK++ +D ++RRISL +K +
Sbjct: 340  VVQVGDDAMVKVIDIDLDRRRISLSLKQA 368



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 152/359 (42%), Gaps = 34/359 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +  +VG  +   VL  + 
Sbjct: 39  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVEVGEFVEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     + +  EA + +   G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEALKEADEPV--EGTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 155 LVEMRRVRDLQP----YVGRKIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLA 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  V      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 RGQVRKGVVSSVVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 265 VLDVDLDRERVSLSLK-----ATQEDPWRLYARTHAIGQIVPGKVTKLVPFGAFVRVEEG 319

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 717
           + G    S+  +       +   VG      ++D++ +  RI+LSLKQ+    T D  F
Sbjct: 320 IEGLVHISELAERHVEIPEQVVQVGDDAMVKVIDIDLDRRRISLSLKQANEGMTVDTEF 378


>gi|255324624|ref|ZP_05365741.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
 gi|311740509|ref|ZP_07714336.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
            33035]
 gi|255298530|gb|EET77830.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
 gi|311304029|gb|EFQ80105.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
            33035]
          Length = 486

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +     P E+ E      +G  V   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVE------VGDEVDAL 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELQAKEEPVTGTVIEVVKG--GLIL 138

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +   +P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG---------------QELEAKIIELDKQRN---N 180

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAYLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 282  WRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVTVGQ 340

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +V VK++ +D E+RRISL +K +
Sbjct: 341  EVMVKVIDIDLERRRISLSVKQA 363



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           ++G    SEL       P  +  VGQ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLS 359



 Score = 49.3 bits (116), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEVDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEEL-QAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAYLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+          +   VGQ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLSVKQA-----DEDYTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDPETNEWKEGF 405


>gi|423610022|ref|ZP_17585883.1| ribosomal protein S1 [Bacillus cereus VD107]
 gi|401249339|gb|EJR55645.1| ribosomal protein S1 [Bacillus cereus VD107]
          Length = 382

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 182/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ I        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNIG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTEY-KGKALAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++            ++D+  K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-----------QELDSKKK--EAISSLKEGDIVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N  S +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVASEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPSE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++V VK+L+V   ++RISL +K +  +N+        E  SD A
Sbjct: 317  VLEMGQEVTVKVLEVHVAEKRISLSIKEALEENNVIEDYSQYEPNSDSA 365



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 132/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GKA+   ++ +++EK   R++L      + ++ +D    
Sbjct: 127  FIPASLVEVHYVEDFTE--YKGKALAVKIVELDREKN--RVILS--HKAVVEQELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VASEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPSEVLEMGQEVTV 326

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEINNLS-NLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K +          SQ E N+ S    + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVIEDYSQYEPNSDSATFQLSDIIGEQLKKL 380



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 150/360 (41%), Gaps = 37/360 (10%)

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMNSKELQVGDVVTGSVTKVEEKQVLVNIGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEDDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--- 541
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS       V E +L   
Sbjct: 125 RGFIPASLVEVHY-VEDFTEYK-GKALAVKIVELDREKNRVILSH----KAVVEQELDSK 178

Query: 542 -------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SV 592
                  +K G +V G V  +T     V V   G   G +   H++  + H  V +   V
Sbjct: 179 KKEAISSLKEGDIVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEV 231

Query: 593 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIE 649
           ++ G +   ++L +D ++  + LS     I +AQ  P +  AS I    +  G V  ++ 
Sbjct: 232 LEQGQKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVASEIKAGDIREGVVKRLVT 286

Query: 650 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
            G FV  L  + G    S+  +    + S+   +GQ V   +L+V+    RI+LS+K++ 
Sbjct: 287 FGAFVEILPGVEGLVHVSQIANRHVKNPSEVLEMGQEVTVKVLEVHVAEKRISLSIKEAL 346


>gi|218896527|ref|YP_002444938.1| 30S ribosomal protein S1 [Bacillus cereus G9842]
 gi|228900178|ref|ZP_04064410.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
 gi|402561411|ref|YP_006604135.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-771]
 gi|423361556|ref|ZP_17339058.1| ribosomal protein S1 [Bacillus cereus VD022]
 gi|423564107|ref|ZP_17540383.1| ribosomal protein S1 [Bacillus cereus MSX-A1]
 gi|434374536|ref|YP_006609180.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-789]
 gi|218545661|gb|ACK98055.1| ribosomal protein S1 [Bacillus cereus G9842]
 gi|228859448|gb|EEN03876.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
 gi|401079367|gb|EJP87665.1| ribosomal protein S1 [Bacillus cereus VD022]
 gi|401197598|gb|EJR04527.1| ribosomal protein S1 [Bacillus cereus MSX-A1]
 gi|401790063|gb|AFQ16102.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-771]
 gi|401873093|gb|AFQ25260.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-789]
          Length = 382

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHAAEKRISLSIKEALEENN 350



 Score = 43.9 bits (102), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 130/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K +          SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHAAEKRISLSIKEALEENNVIEDYSQYEPNADSATFQLSDIIGEQLKKL 380



 Score = 41.2 bits (95), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 149/356 (41%), Gaps = 29/356 (8%)

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 538
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 539 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 596
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 653
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
           V  L  + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAL 346


>gi|228964572|ref|ZP_04125681.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
            T04001]
 gi|228795106|gb|EEM42603.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
            T04001]
          Length = 393

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 6/179 (3%)

Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
            K  E I  L    +V+G V+ +T  G F+ +   +D  V +S +S   VE P +    G+
Sbjct: 178  KKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQ 236

Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
             V  +VLSV+  ++R+ +++K +          N    +  GDI  G +KR+ ++G F+ 
Sbjct: 237  KVKVKVLSVDADTQRISLSIKAAQPGPWE----NVAGEIKAGDIREGVVKRLVTFGAFVE 292

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            I    + GL HVS+++  HV N   +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 293  I-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEALEENN 350



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
            GK +A +++ ++    RV ++ K          +   +S+L  GD+V G ++R+  +G F
Sbjct: 146  GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAF 205

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +   +  GL H+S++S + V+    +   G+KVKVK+L VD + +RISL +K++
Sbjct: 206  VNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAA 259



 Score = 43.9 bits (102), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 130/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K +          SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHAAEKRISLSIKEALEENNVIEDYSQYEPNADSATFQLSDIIGEQLKKL 380



 Score = 40.8 bits (94), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 149/356 (41%), Gaps = 29/356 (8%)

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 538
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 539 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 596
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 653
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
           V  L  + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAL 346


>gi|229029277|ref|ZP_04185367.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
 gi|228732025|gb|EEL82917.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
          Length = 382

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 172/394 (43%), Gaps = 64/394 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                              +S     +L  D     K  E I  L    +V+G V+ +T  
Sbjct: 159  EKNRVI------------LSHKAVVELELD----SKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    L  GDI  G +KR+ ++G F+ +    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGELKAGDIREGVVKRLVTFGAFVEV-LPGVEGLVHVSQIANRHVKNPSE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   ++RI+++ K          ++   +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGELKAGD--IREGVVKRLVTFGAFVEVLPGVEG 299

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               S++       PS +  +GQ VK +++    A +RI+LS 
Sbjct: 300 LVHVSQIANRHVKNPSEVLEMGQEVKVKVLEVHVAEKRISLSI 342



 Score = 43.9 bits (102), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 126/294 (42%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               +L    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGELKAGDIREGVVKRLVTFGAFVEVLPGVEGLVHVSQIANRHVKNPSEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K +          SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVIEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|239616621|ref|YP_002939943.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505452|gb|ACR78939.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 572

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 193/479 (40%), Gaps = 52/479 (10%)

Query: 322 EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE-GLVFTHSDVKPGMVVKGK 380
           E E+ K  K+Y  G  + V+I+     EG +    K   F   L    +  K G  V G 
Sbjct: 59  ESELVKPLKEYNIGDKIEVQIMKVDEDEGRSVVSEKRIYFRTALKKVENAYKSGEPVTGT 118

Query: 381 VIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTH 440
           ++     G  V+    V A  P         ++ G+    G E  F+V+  + K+     
Sbjct: 119 ILGETKGGYNVKLLNVVPAFLPGSQSG----IRRGRPIPEG-EQEFKVINFRKKKRGTNI 173

Query: 441 KKTLVKSKLAILSSYAEATDRLIT-HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 499
             +L   K   + +Y EA +   T  G I  I+  G FVR  N V G  P SE+  DP  
Sbjct: 174 VVSLTAFKEEKVKAYFEALETGSTVEGTIESIKDFGAFVRLTNEVVGLIPASEVSWDPSQ 233

Query: 500 EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVT 556
           +   + +VG  V  +++   P  ++I+LS       P    E+    +GS+V GVV  + 
Sbjct: 234 KVHDVLNVGDKVTVKVIDVDPEKKKISLSLKQLQEDPWNTVEEKY-PVGSVVEGVVKSIV 292

Query: 557 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV----LDNESSNL 612
           P    V +I  G       +E    ++     +K +I+ G   D++ V    +D E   L
Sbjct: 293 PFGFFV-MIEPGVEGLVHISEVFWGNVRRD--LKELIREG---DRVKVKIKDIDKEKRTL 346

Query: 613 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 672
            LS + +L +    +           +V G V  ++ TG  V     ++GF P S+    
Sbjct: 347 SLSYREALGDPWDNI---EEKYKVGEIVDGKVVKVLPTGAIVELEEYVSGFVPVSEMSWN 403

Query: 673 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 732
               +         V++ IL ++ E  R+ LSLKQ    +T+  + + H           
Sbjct: 404 FVDRVEDVVKESSEVKTKILSIDKENRRMRLSLKQ----ATEDPWQKVH----------- 448

Query: 733 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 791
                 +ELK      +G  +EGK+      G VV  + +  V  F+   Q+A   VE+
Sbjct: 449 ------TELK------VGDYVEGKITRLIKSGAVVMVDGYG-VEAFLPASQVAMKRVEN 494



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 176/424 (41%), Gaps = 56/424 (13%)

Query: 1018 SMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSE 1077
            S+    E   K  FE  +   G  V G +  + +  A + ++  +   +   + +++PS 
Sbjct: 176  SLTAFKEEKVKAYFEALET--GSTVEGTIESIKDFGAFVRLTNEVVGLIPASEVSWDPS- 232

Query: 1078 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1137
             Q+     ++G  VT  V+ ++ EKK + L L+  Q+       D  N   + +   G +
Sbjct: 233  -QKVHDVLNVGDKVTVKVIDVDPEKKKISLSLKQLQE-------DPWNTVEEKY-PVGSV 283

Query: 1138 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1197
            V G +  I+    G  V I P + G VH +E+    V   L               EG  
Sbjct: 284  VEGVVKSIVPF--GFFVMIEPGVEGLVHISEVFWGNVRRDLKEL----------IREGDR 331

Query: 1198 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1257
            VK K+ +I +  R    + LS R +L                 P  ++E  E      IV
Sbjct: 332  VKVKIKDIDKEKR---TLSLSYREALG---------------DPWDNIE--EKYKVGEIV 371

Query: 1258 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1317
             G V  V   G  + L   +   V +S +S  +V+  E        V  ++LS++  ++R
Sbjct: 372  DGKVVKVLPTGAIVELEEYVSGFVPVSEMSWNFVDRVEDVVKESSEVKTKILSIDKENRR 431

Query: 1318 VEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            + ++LK  T D      +E      L VGD V G+I R+   G  + ++   +      S
Sbjct: 432  MRLSLKQATEDPWQKVHTE------LKVGDYVEGKITRLIKSGAVVMVDGYGVEAFLPAS 485

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKV----DKEKRRISLGMKSSYFKNDADNLQMSSEE 1431
            +++   V+N+E   + GE  + KI+++    +K+ R + + +K      + +  Q + EE
Sbjct: 486  QVAMKRVENLEDAIKIGEHRRFKIIRLVYDPEKDVRNMVVSIKQLLLDKEKEETQKALEE 545

Query: 1432 ESDE 1435
             S E
Sbjct: 546  LSGE 549



 Score = 40.8 bits (94), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 131/308 (42%), Gaps = 60/308 (19%)

Query: 61  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQE----GMVLTAYVK 116
           + +VG  V+  V+ +D +KK+I       SL L  L +     TV+E    G V+   VK
Sbjct: 238 VLNVGDKVTVKVIDVDPEKKKI-------SLSLKQLQED-PWNTVEEKYPVGSVVEGVVK 289

Query: 117 SIEDHGYILHFGLPSFTGFLP---------RNNLAENSGIDVKPGLLLQGVVRSIDRTRK 167
           SI   G+ +    P   G +          R +L E     ++ G  ++  ++ ID+ ++
Sbjct: 290 SIVPFGFFVMIE-PGVEGLVHISEVFWGNVRRDLKEL----IREGDRVKVKIKDIDKEKR 344

Query: 168 VVYLS-----SDP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 221
            + LS      DP D + +                G +V  +V  +L  G ++    Y +
Sbjct: 345 TLSLSYREALGDPWDNIEEKYK------------VGEIVDGKVVKVLPTGAIVELEEYVS 392

Query: 222 GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAP 276
           G V +  +   F     ++   +  +V  +IL +D  +R + L+L     +P+    +  
Sbjct: 393 GFVPVSEMSWNF-VDRVEDVVKESSEVKTKILSIDKENRRMRLSLKQATEDPW----QKV 447

Query: 277 PSHVKVGDIYDQSKVVR-VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 335
            + +KVGD Y + K+ R +  G  +++D         A++  S VA + V  LE   K G
Sbjct: 448 HTELKVGD-YVEGKITRLIKSGAVVMVD----GYGVEAFLPASQVAMKRVENLEDAIKIG 502

Query: 336 SCVRVRIL 343
              R +I+
Sbjct: 503 EHRRFKII 510


>gi|334136644|ref|ZP_08510104.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
 gi|333605843|gb|EGL17197.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
          Length = 418

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 180/383 (46%), Gaps = 52/383 (13%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            V  G  V G + KV+ + A++ I       + + +      +++   +    G+ +   +
Sbjct: 27   VKKGDIVKGKIIKVEQDQAIVDIGYKYDGTIPLRE--LSSVQIENADQAVQEGQEIELKI 84

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLV 1153
            ++I+  K+  +LVL       S ++VD     + +Q  + E  I+   +++++ G  GLV
Sbjct: 85   VTIDDNKE--KLVL-------SKRSVDSEKAWETLQQKLDEKVIIEAVVAEVVKG--GLV 133

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V +G  + G V            P S  +    +  S Y +G+ ++ +V EI R      
Sbjct: 134  VDVG--VRGFV------------PASMVERSFVEDFSDY-KGRTLRLRVKEIDRE---KN 175

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
             V LS +  LD        D+ + ++  GK            + +G V+ +T  G F+ +
Sbjct: 176  KVILSQKDVLDEEYEAQKKDIISKIEV-GK------------VYEGTVQRLTQFGAFVDI 222

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  V +S ++  +VE P +    G  V+ +VL V+P   +V ++LK +      ++
Sbjct: 223  G-GIDGLVHISEMAWHHVEHPSEIVKEGDKVSVQVLKVDPEKDKVSLSLKATQEGPWEKA 281

Query: 1334 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
            E         G+I+ G +KR+  +G F+ I    + GL H+S+++  H+   + + + G+
Sbjct: 282  E----KTFTTGEIITGTVKRLAGFGAFVEI-APGVEGLVHISQIAHRHIATPQEVLKEGQ 336

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +VKVK+L V+  ++R+SL +K +
Sbjct: 337  EVKVKVLDVNAAEKRVSLSIKET 359



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 25/348 (7%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           VK G +VKGK+I V+   AIV          PL  +S  +I    +  + G E+  +++ 
Sbjct: 27  VKKGDIVKGKIIKVEQDQAIVDIGYKYDGTIPLRELSSVQIENADQAVQEGQEIELKIVT 86

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           +   +  +   K  V S+ A  +   +  +++I    + ++ K G  V    GV+GF P 
Sbjct: 87  IDDNKEKLVLSKRSVDSEKAWETLQQKLDEKVIIEAVVAEVVKGGLVVDV--GVRGFVPA 144

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDL---VKL 544
           S +      E  S Y  G+ ++ R+        ++ LS    + +     + D+   +++
Sbjct: 145 S-MVERSFVEDFSDYK-GRTLRLRVKEIDREKNKVILSQKDVLDEEYEAQKKDIISKIEV 202

Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QL 602
           G +  G V  +T     V +   G   G +    +A  H+EH +    ++K G +   Q+
Sbjct: 203 GKVYEGTVQRLTQFGAFVDI---GGIDGLVHISEMAWHHVEHPS---EIVKEGDKVSVQV 256

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETGCFVRFLGRL 660
           L +D E   + LS K     + Q+ P + +        ++ G V  +   G FV     +
Sbjct: 257 LKVDPEKDKVSLSLK-----ATQEGPWEKAEKTFTTGEIITGTVKRLAGFGAFVEIAPGV 311

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+      A   +    GQ V+  +LDVN+   R++LS+K++
Sbjct: 312 EGLVHISQIAHRHIATPQEVLKEGQEVKVKVLDVNAAEKRVSLSIKET 359


>gi|229058232|ref|ZP_04196620.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
 gi|423509417|ref|ZP_17485948.1| ribosomal protein S1 [Bacillus cereus HuA2-1]
 gi|423594474|ref|ZP_17570505.1| ribosomal protein S1 [Bacillus cereus VD048]
 gi|228720096|gb|EEL71680.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
 gi|401224271|gb|EJR30829.1| ribosomal protein S1 [Bacillus cereus VD048]
 gi|402456708|gb|EJV88481.1| ribosomal protein S1 [Bacillus cereus HuA2-1]
          Length = 382

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|256371862|ref|YP_003109686.1| RNA binding S1 domain-containing protein [Acidimicrobium ferrooxidans
            DSM 10331]
 gi|256008446|gb|ACU54013.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 427

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 170/395 (43%), Gaps = 71/395 (17%)

Query: 1031 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1090
            F+E D+     V+G V KVD +  LL I    K++  I         L+E   R  +  A
Sbjct: 49   FDEGDI-----VSGLVVKVDKDEVLLDIG--YKSEGVI--------PLRELSIRKDVSPA 93

Query: 1091 VTGHV------LSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRI 1142
                V      L + KE +  RLVL       S K          ++       +V G +
Sbjct: 94   DVVSVGDRIDALVLQKEDREGRLVL-------SKKRAQFEKAWKEIEAIKARDGVVRGEV 146

Query: 1143 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1202
             +++ G  GL+V IG   +      +L+ +    P  G D               ++ K+
Sbjct: 147  IEVVKG--GLIVDIGLRGFLPASHVDLRRVRDLAPFVGQD---------------IEAKI 189

Query: 1203 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1262
            +E+ R   G  +V LS R+ L+           T +              P  + +G V 
Sbjct: 190  IELDR---GRNNVVLSRRAYLEENQRDQRERFLTSI-------------RPGEVRKGVVS 233

Query: 1263 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            ++   G F+ L   +D  V +S LS  +V+ P     +G  V   VL V+   +R+ ++L
Sbjct: 234  SIVHFGVFVDLG-GMDGLVHVSELSWNHVDHPSSVVSVGDEVQVLVLEVDQEHERISLSL 292

Query: 1323 KTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1381
            K +      +      ++ H +G++V G++ ++  +G F+ +    + GL H+SE++  H
Sbjct: 293  KAT-----QRDPWQEFASAHKIGELVYGRVTKIVPFGCFVQV-APGIEGLVHISEMALHH 346

Query: 1382 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            VD  E +   GE++ VKI+ +D  +RRISL ++ +
Sbjct: 347  VDLPEQVVSVGEELWVKIIDLDPGRRRISLSIRQA 381



 Score = 63.2 bits (152), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           + ++PG V KG V ++  FG  V   GG+  L  +  +S   +  P     VG E+   V
Sbjct: 220 TSIRPGEVRKGVVSSIVHFGVFVDL-GGMDGLVHVSELSWNHVDHPSSVVSVGDEVQVLV 278

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V  + +RI+++ K T         S++       + +G +TKI   GCFV+   G++G
Sbjct: 279 LEVDQEHERISLSLKATQRDPWQEFASAHKIGE---LVYGRVTKIVPFGCFVQVAPGIEG 335

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SE+ L     P  +  VG+ +  +I+   P  RRI+LS 
Sbjct: 336 LVHISEMALHHVDLPEQVVSVGEELWVKIIDLDPGRRRISLSI 378



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 160/361 (44%), Gaps = 29/361 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + PL  +S  + V P     VG  +   VL  + 
Sbjct: 52  GDIVSGLVVKVDKDEVLLDIGYKSEGVIPLRELSIRKDVSPADVVSVGDRIDALVLQKED 111

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           +  R+ ++ K+   +     + +  +A D ++  G + ++ K G  V    G++GF P S
Sbjct: 112 REGRLVLSKKRAQFEKAWKEIEAI-KARDGVV-RGEVIEVVKGGLIVDI--GLRGFLPAS 167

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
            + L    + +    VGQ ++ +I+      +++  SRR  L    +  R      ++ G
Sbjct: 168 HVDLRRVRDLAPF--VGQDIEAKIIELDRGRNNVVLSRRAYLEENQRDQRERFLTSIRPG 225

Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQLLV 604
            +  GVV  +    V V +   G   G +    L+ +H++H +   SV+  G E  Q+LV
Sbjct: 226 EVRKGVVSSIVHFGVFVDL---GGMDGLVHVSELSWNHVDHPS---SVVSVGDEV-QVLV 278

Query: 605 L--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
           L  D E   + LS K +  +  Q+    AS      +V+G V  I+  GCFV+    + G
Sbjct: 279 LEVDQEHERISLSLKATQRDPWQEF---ASAHKIGELVYGRVTKIVPFGCFVQVAPGIEG 335

Query: 663 FAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 721
               S+       DL  +   VG+ +   I+D++    RI+LS++Q+      A   +E 
Sbjct: 336 LVHISEMA-LHHVDLPEQVVSVGEELWVKIIDLDPGRRRISLSIRQALEGGELAPEYREA 394

Query: 722 F 722
           F
Sbjct: 395 F 395


>gi|341821259|emb|CCC57612.1| ribosomal protein S1 [Weissella thailandensis fsh4-2]
          Length = 405

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 140/283 (49%), Gaps = 44/283 (15%)

Query: 1136 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1195
            DIV   +++ + G  GLVV +   + G V  + ++N  V D            L+ Y +G
Sbjct: 114  DIVEAPVTQAVKG--GLVVDV-EGVRGFVPASMIENRFVQD------------LNQY-KG 157

Query: 1196 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
            Q ++ K++EI+        + LS R  L+   S   + +              ++LS   
Sbjct: 158  QTIRAKIIEINAA---DSRLILSRREVLNEERSAALARI-------------FDELSVGD 201

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            +++G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  
Sbjct: 202  VIEGKVARMTNFGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPER 260

Query: 1316 KRVEVTLKTSDS---RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
            +R+ +++K +      TA++           G ++ G +KRV  +G F+ +    + GL 
Sbjct: 261  ERISLSIKATQPGPWDTAAE-------KAPAGTVLEGTVKRVVDFGAFVEV-FPGVEGLV 312

Query: 1373 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            HVS++S  H+ N   +  AG+KV+VK+L V+ E++R+SL +K+
Sbjct: 313  HVSQISHKHIANPSDVLTAGDKVQVKVLDVNPERQRLSLSIKA 355



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
            G+ +  +++ +     R+ ++ +   ++ R+A+ + I     L VGD++ G++ R+ ++G
Sbjct: 157  GQTIRAKIIEINAADSRLILSRREVLNEERSAALARI--FDELSVGDVIEGKVARMTNFG 214

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             FI +   +  GL HVSE+S + V     +   GE+VKVK+L +D E+ RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPERERISLSIKAT 270



 Score = 60.8 bits (146), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
           G V++GKV  + +FGA +   GGV  L  +  +S   + +P     VG E+  +VLG+  
Sbjct: 200 GDVIEGKVARMTNFGAFIDL-GGVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDP 258

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           + +RI+++ K T    +     + AE A    +  G + ++   G FV  + GV+G    
Sbjct: 259 ERERISLSIKAT----QPGPWDTAAEKAPAGTVLEGTVKRVVDFGAFVEVFPGVEGLVHV 314

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           S++       PS +   G  V+ +++   P  +R++LS 
Sbjct: 315 SQISHKHIANPSDVLTAGDKVQVKVLDVNPERQRLSLSI 353



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 27/352 (7%)

Query: 369 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMS---EFEIVKPGKKFKVGAE 423
           ++VK G VVKG+V+A+D +   IV   G GV+ + PL  ++   + ++    K   V   
Sbjct: 16  AEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDADVNDLVKVGDVLDL 75

Query: 424 LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
           +V   +G   +  +    K  ++++ A     ++ +   I    +T+  K G  V    G
Sbjct: 76  VVVSTIGSDKEGGSYLLSKRRLEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDV-EG 134

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSE--- 538
           V+GF P S +  +   +  + Y  GQ ++ +I+    A  R+ LS   ++   R +    
Sbjct: 135 VRGFVPASMIE-NRFVQDLNQYK-GQTIRAKIIEINAADSRLILSRREVLNEERSAALAR 192

Query: 539 -DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
             D + +G ++ G V  +T     + +   G   G +    ++   E  +    V+  G 
Sbjct: 193 IFDELSVGDVIEGKVARMTNFGAFIDL---GGVDGLVHVSEISH--ERVSQPSDVLSVGE 247

Query: 598 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFV 654
           E   ++L LD E   + LS     I + Q  P D  A      +V+ G V  +++ G FV
Sbjct: 248 EVKVKVLGLDPERERISLS-----IKATQPGPWDTAAEKAPAGTVLEGTVKRVVDFGAFV 302

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
                + G    S+      A+ S     G  V+  +LDVN E  R++LS+K
Sbjct: 303 EVFPGVEGLVHVSQISHKHIANPSDVLTAGDKVQVKVLDVNPERQRLSLSIK 354



 Score = 45.8 bits (107), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 30/230 (13%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT--VMKSVIKPGYEF 599
           VK+G +V G V  +  N  V+  I     +G IP   L    +     ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDADVNDLVKVGDVLDLVV 77

Query: 600 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
              +  D E  + LLS +   + + +     AS    + +V   V   ++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDVEG- 134

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS ++            
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRE------------ 180

Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
              L EE+ A L          +  +   +G VIEGKV    +FG  +  
Sbjct: 181 --VLNEERSAALA---------RIFDELSVGDVIEGKVARMTNFGAFIDL 219


>gi|229010903|ref|ZP_04168099.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
 gi|423486714|ref|ZP_17463396.1| ribosomal protein S1 [Bacillus cereus BtB2-4]
 gi|423492438|ref|ZP_17469082.1| ribosomal protein S1 [Bacillus cereus CER057]
 gi|423500771|ref|ZP_17477388.1| ribosomal protein S1 [Bacillus cereus CER074]
 gi|423516257|ref|ZP_17492738.1| ribosomal protein S1 [Bacillus cereus HuA2-4]
 gi|423601062|ref|ZP_17577062.1| ribosomal protein S1 [Bacillus cereus VD078]
 gi|423663521|ref|ZP_17638690.1| ribosomal protein S1 [Bacillus cereus VDM022]
 gi|228750303|gb|EEM00133.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
 gi|401155057|gb|EJQ62471.1| ribosomal protein S1 [Bacillus cereus CER074]
 gi|401155922|gb|EJQ63329.1| ribosomal protein S1 [Bacillus cereus CER057]
 gi|401165163|gb|EJQ72482.1| ribosomal protein S1 [Bacillus cereus HuA2-4]
 gi|401231608|gb|EJR38111.1| ribosomal protein S1 [Bacillus cereus VD078]
 gi|401295421|gb|EJS01045.1| ribosomal protein S1 [Bacillus cereus VDM022]
 gi|402438591|gb|EJV70600.1| ribosomal protein S1 [Bacillus cereus BtB2-4]
          Length = 382

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVIVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 44.3 bits (103), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|424780259|ref|ZP_18207139.1| SSU ribosomal protein S1p [Catellicoccus marimammalium M35/04/3]
 gi|422843217|gb|EKU27658.1| SSU ribosomal protein S1p [Catellicoccus marimammalium M35/04/3]
          Length = 394

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 96/170 (56%), Gaps = 8/170 (4%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            ++++L  + ++ G V  +T  G F+ L   +D  V +S ++  +V  P  E  +G  V  
Sbjct: 195  RLQELVADEVLTGKVARLTDFGAFVDLG-GVDGLVHVSEIAHHHVAKPSDELKVGDEVTV 253

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIEN 1365
            ++LSV+P   RV +++K +      +     L++ + VGD++ G +KR+  +G F+ I  
Sbjct: 254  KILSVDPEEGRVSLSMKAT-----QKGPWEKLADEVAVGDVLEGVVKRLTDFGAFVEI-F 307

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
              + GL H+S++S  H+     + + G++VKVK+L ++  +RRI L +K+
Sbjct: 308  PGVEGLVHISQISHKHIATPHEVLKPGQEVKVKVLDMNPAERRIGLSLKA 357



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 6/156 (3%)

Query: 376 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK- 434
           V+ GKV  +  FGA V   GGV  L  +  ++   + KP  + KVG E+  ++L V  + 
Sbjct: 204 VLTGKVARLTDFGAFVDL-GGVDGLVHVSEIAHHHVAKPSDELKVGDEVTVKILSVDPEE 262

Query: 435 -RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
            R++++ K T  K     L+      D L   G + ++   G FV  + GV+G    S++
Sbjct: 263 GRVSLSMKATQ-KGPWEKLADEVAVGDVL--EGVVKRLTDFGAFVEIFPGVEGLVHISQI 319

Query: 494 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
                  P  +   GQ VK +++   PA RRI LS 
Sbjct: 320 SHKHIATPHEVLKPGQEVKVKVLDMNPAERRIGLSL 355



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 10/170 (5%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP--IGKLVAG 1306
            E    N IV+G V +V   G  + L  +    V  S ++D Y+    K+F    G+++  
Sbjct: 111  EKFKNNEIVEGKVTDVVRGGLVVDLGVR--GFVPASMITDHYI----KDFSEYKGRVLPL 164

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +++ +EP   R+ ++     +    ++    L  L   +++ G++ R+  +G F+ +   
Sbjct: 165  KIMEIEPSENRLILSHVAVMNEEKEEARQKRLQELVADEVLTGKVARLTDFGAFVDLGGV 224

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  GL HVSE++  HV       + G++V VKIL VD E+ R+SL MK++
Sbjct: 225  D--GLVHVSEIAHHHVAKPSDELKVGDEVTVKILSVDPEEGRVSLSMKAT 272



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 146/351 (41%), Gaps = 58/351 (16%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR------- 535
           GV+G  P  EL   P  +   +  VG V+   ++S+I  S + N ++++   R       
Sbjct: 49  GVEGVIPSRELSTLPFEKIEDIVKVGDVLDLVVISTI--SDKENGNYLLSKRRLDAKKAW 106

Query: 536 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
           V  ++  K   +V G V  V    +VV +  +G+   ++ T+H   +++  +  K  + P
Sbjct: 107 VDIEEKFKNNEIVEGKVTDVVRGGLVVDLGVRGFVPASMITDH---YIKDFSEYKGRVLP 163

Query: 596 GYEFDQLLVLDNE-SSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGC 652
                 L +++ E S N L+ +  +++N  ++         +  + V+ G V  + + G 
Sbjct: 164 ------LKIMEIEPSENRLILSHVAVMNEEKEEARQKRLQELVADEVLTGKVARLTDFGA 217

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           FV  LG + G    S+      A  S    VG  V   IL V+ E GR++LS+K +    
Sbjct: 218 FVD-LGGVDGLVHVSEIAHHHVAKPSDELKVGDEVTVKILSVDPEEGRVSLSMKAT---- 272

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 772
                                    G   K  +   +G V+EG V    DFG  V     
Sbjct: 273 -----------------------QKGPWEKLADEVAVGDVLEGVVKRLTDFGAFVEI--F 307

Query: 773 SDVYGF-----ITHHQLAGA--TVESGSVIQAAILDVAKAERLVDLSLKTV 816
             V G      I+H  +A     ++ G  ++  +LD+  AER + LSLK +
Sbjct: 308 PGVEGLVHISQISHKHIATPHEVLKPGQEVKVKVLDMNPAERRIGLSLKAL 358



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 145/350 (41%), Gaps = 27/350 (7%)

Query: 370 DVKPGMVVKGKVIAV-DSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +V  G  VKG+V+++ D    IV   G GV+ + P   +S     K     KVG  L   
Sbjct: 21  EVSVGDTVKGEVLSIQDGKQVIVGIEGAGVEGVIPSRELSTLPFEKIEDIVKVGDVLDLV 80

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
           V+   S +    +   L K +L    ++ +  ++     I  G +T + + G  V    G
Sbjct: 81  VISTISDKENGNY--LLSKRRLDAKKAWVDIEEKFKNNEIVEGKVTDVVRGGLVVDL--G 136

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
           V+GF P S +  D   +  S Y  G+V+  +IM   P+  R+ LS +       E+   K
Sbjct: 137 VRGFVPASMI-TDHYIKDFSEYK-GRVLPLKIMEIEPSENRLILSHVAVMNEEKEEARQK 194

Query: 544 -LGSLV-----SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
            L  LV     +G V  +T     V +   G   G +    +A H  H       +K G 
Sbjct: 195 RLQELVADEVLTGKVARLTDFGAFVDL---GGVDGLVHVSEIAHH--HVAKPSDELKVGD 249

Query: 598 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656
           E   ++L +D E   + LS K +     ++L   A  +    V+ G V  + + G FV  
Sbjct: 250 EVTVKILSVDPEEGRVSLSMKATQKGPWEKL---ADEVAVGDVLEGVVKRLTDFGAFVEI 306

Query: 657 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
              + G    S+      A   +    GQ V+  +LD+N    RI LSLK
Sbjct: 307 FPGVEGLVHISQISHKHIATPHEVLKPGQEVKVKVLDMNPAERRIGLSLK 356



 Score = 44.3 bits (103), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 139/339 (41%), Gaps = 47/339 (13%)

Query: 285 IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 344
           I D  +V+    G G+   IPS  +ST  +  I D+            K G  + + ++ 
Sbjct: 35  IQDGKQVIVGIEGAGVEGVIPSRELSTLPFEKIEDIV-----------KVGDVLDLVVIS 83

Query: 345 FRHLEGLATGIL---KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 401
               +     +L   +  A +  V      K   +V+GKV  V   G +V    GV+   
Sbjct: 84  TISDKENGNYLLSKRRLDAKKAWVDIEEKFKNNEIVEGKVTDVVRGGLVVDL--GVRGFV 141

Query: 402 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE---- 457
           P   +++  I    K F   +E   RVL +K   I  +  + L+ S +A+++   E    
Sbjct: 142 PASMITDHYI----KDF---SEYKGRVLPLKIMEIEPSENR-LILSHVAVMNEEKEEARQ 193

Query: 458 ------ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
                   D ++T G + ++   G FV    GV G    SE+      +PS    VG  V
Sbjct: 194 KRLQELVADEVLT-GKVARLTDFGAFVDL-GGVDGLVHVSEIAHHHVAKPSDELKVGDEV 251

Query: 512 KCRIMSSIPASRRINLSFMMKPTRVSE----DDLVKLGSLVSGVVDVVTPNAVVVYVIAK 567
             +I+S  P   R++LS  MK T+        D V +G ++ GVV  +T     V +   
Sbjct: 252 TVKILSVDPEEGRVSLS--MKATQKGPWEKLADEVAVGDVLEGVVKRLTDFGAFVEIFPG 309

Query: 568 GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD 606
              +G +    ++   +H      V+KPG E  ++ VLD
Sbjct: 310 --VEGLVHISQISH--KHIATPHEVLKPGQEV-KVKVLD 343


>gi|228951974|ref|ZP_04114071.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
            str. T03a001]
 gi|423504811|ref|ZP_17481402.1| ribosomal protein S1 [Bacillus cereus HD73]
 gi|449088385|ref|YP_007420826.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
            str. HD73]
 gi|228807699|gb|EEM54221.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
            str. T03a001]
 gi|402455333|gb|EJV87116.1| ribosomal protein S1 [Bacillus cereus HD73]
 gi|449022142|gb|AGE77305.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
            str. HD73]
          Length = 382

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVQVAEKRISLSIKEALEENN 350



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   ++RI+++ K          ++   +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 539
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVQVAEKRISLSIKEALEENNVTED 354



 Score = 44.7 bits (104), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 132/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V+   KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVQVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|297195006|ref|ZP_06912404.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721927|gb|EDY65835.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 500

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|219848105|ref|YP_002462538.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans DSM
            9485]
 gi|219542364|gb|ACL24102.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
          Length = 500

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%)

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
            +++DL P M ++G V ++   G F+ +    D  V +S +SD  +++P +   IG  V  
Sbjct: 96   RLKDLQPGMELEGKVTSIALYGIFVDVGVGRDGLVHISEMSDRRIDTPSELVQIGDTVKV 155

Query: 1307 RVLSVEPLSKRVEVTL----KTSDSRTASQSEI------------NNLSNLHVGDIVIGQ 1350
             V SV+  ++R+ +T+    +    R + QS+               L++L VG+IV G 
Sbjct: 156  WVKSVDLDARRISLTMLNPSRGEKPRRSRQSQPAQPQPRRQEVDREKLASLKVGEIVEGV 215

Query: 1351 IKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1410
            I     +G F  I      GL H+SELSE  V+  E   + GE+ + K+L++D E  RIS
Sbjct: 216  ITGFAPFGAFADI-GVGKDGLIHISELSEGRVEKPEDAVKVGERYQFKVLEIDGEGTRIS 274

Query: 1411 LGMKSS 1416
            L ++ +
Sbjct: 275  LSLRRA 280



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 40/225 (17%)

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            EK+  L    IV+G +      G F  +    D  + +S LS+G VE PE    +G+   
Sbjct: 201  EKLASLKVGEIVEGVITGFAPFGAFADIGVGKDGLIHISELSEGRVEKPEDAVKVGERYQ 260

Query: 1306 GRVLSVE-------------PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1352
             +VL ++               ++R                    +  L  G I+ G + 
Sbjct: 261  FKVLEIDGEGTRISLSLRRAQRTQR--------------------MQQLEPGQIIEGTVS 300

Query: 1353 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1412
             + ++G F+ I      GL H+S L+   V  +E + + G+KVKVK+L VD + +RISL 
Sbjct: 301  GIATFGAFVDI-GVGRDGLVHISALAPHRVAKVEDVVKVGDKVKVKVLGVDPQSKRISLT 359

Query: 1413 MKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQ 1457
            M+      + +    ++ +E+ E  EEV    R + LE  + A Q
Sbjct: 360  MRL-----EEEQPATTAGDEAAEPAEEVTPTRRGN-LERFAAAAQ 398


>gi|227833197|ref|YP_002834904.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
 gi|262184183|ref|ZP_06043604.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
 gi|227454213|gb|ACP32966.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
          Length = 486

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 128/268 (47%), Gaps = 39/268 (14%)

Query: 1150 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1209
            GGL++ IG   +      E++ +   +P  G               Q ++ K++E+ +  
Sbjct: 134  GGLILDIGLRGFLPASLVEMRRVRDLEPYIG---------------QELEAKIIELDKQR 178

Query: 1210 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1269
                +V LS R+ L+   S   S+              +  L    + +G V ++ + G 
Sbjct: 179  N---NVVLSRRAYLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGA 222

Query: 1270 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +    
Sbjct: 223  FVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT---- 277

Query: 1330 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
              +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +
Sbjct: 278  -QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQV 335

Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKSS 1416
               G++V VK++ +D E+RRISL +K +
Sbjct: 336  VNVGQEVMVKVIDIDLERRRISLSVKQA 363



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           ++G    SEL       P  + +VGQ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGQEVMVKVIDIDLERRRISLS 359



 Score = 49.3 bits (116), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 151/355 (42%), Gaps = 33/355 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +     A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAVEEL-HAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAYLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
           + G    S+          +   VGQ V   ++D++ E  RI+LS+KQ+    TD
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGQEVMVKVIDIDLERRRISLSVKQADEDYTD 369


>gi|408790528|ref|ZP_11202146.1| SSU ribosomal protein S1p [Lactobacillus florum 2F]
 gi|408520075|gb|EKK20169.1| SSU ribosomal protein S1p [Lactobacillus florum 2F]
          Length = 405

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 94/170 (55%), Gaps = 6/170 (3%)

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E + +L+   +V+G V  +T+ G FI L   +D  V +S +S  +V        +G+ V 
Sbjct: 193  EIMNNLAAGDVVEGTVARLTNFGAFIDLG-GIDGLVHISEISYDHVNKAADVLSVGEKVK 251

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
             +VLSVEP   R+ +++K          E        VG ++ G +KR+  +G F+ +  
Sbjct: 252  VKVLSVEPERDRISLSIKQLQPGPWDDIE----EKAPVGSVLDGTVKRLVDFGAFVEV-F 306

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
              + GL H+S++S +H+D    + ++G+K++VK+L +D E+ R++L +K+
Sbjct: 307  AGVEGLVHISQISHEHIDKPSDVLKSGQKIQVKVLSIDPEEHRLALSIKA 356



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +++ V P   R+ ++ +    +   Q+    ++NL  GD+V G + R+ ++G FI +   
Sbjct: 164  KIIEVVPEENRLILSHRAIAEKNRKQAREEIMNNLAAGDVVEGTVARLTNFGAFIDLGGI 223

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            +  GL H+SE+S DHV+    +   GEKVKVK+L V+ E+ RISL +K
Sbjct: 224  D--GLVHISEISYDHVNKAADVLSVGEKVKVKVLSVEPERDRISLSIK 269



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 141/348 (40%), Gaps = 50/348 (14%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 538
           GV+G  P  E+  DP   PS  Y VG  +K  ++S I   +  N S+++   R+      
Sbjct: 46  GVEGVVPSKEVSADPDENPSDKYSVGDQIKVVVVSKIGDDKE-NGSYLLSVRRLEALKIW 104

Query: 539 DDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
           D++    S    + V V  P    + V A G  +G IP   + DH     V       G 
Sbjct: 105 DEIKDKESKDENITVKVTRPVKGGLVVNADGV-RGFIPASMITDHF----VSDLNQYKGQ 159

Query: 598 EFD-QLLVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
           E + +++ +  E + L+LS +  +  N  Q      +++    VV G V  +   G F+ 
Sbjct: 160 ELEVKIIEVVPEENRLILSHRAIAEKNRKQAREEIMNNLAAGDVVEGTVARLTNFGAFID 219

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
            LG + G    S+         +    VG+ V+  +L V  E  RI+LS+KQ      D 
Sbjct: 220 -LGGIDGLVHISEISYDHVNKAADVLSVGEKVKVKVLSVEPERDRISLSIKQLQPGPWDD 278

Query: 716 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 775
                   +EEK                     +GSV++G V    DFG  V  E  + V
Sbjct: 279 --------IEEKAP-------------------VGSVLDGTVKRLVDFGAFV--EVFAGV 309

Query: 776 YGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTV 816
            G +   Q++   ++       SG  IQ  +L +   E  + LS+K +
Sbjct: 310 EGLVHISQISHEHIDKPSDVLKSGQKIQVKVLSIDPEEHRLALSIKAL 357



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G VV+G V  + +FGA +   GG+  L  +  +S   + K      VG ++  +VL V+ 
Sbjct: 201 GDVVEGTVARLTNFGAFIDL-GGIDGLVHISEISYDHVNKAADVLSVGEKVKVKVLSVEP 259

Query: 434 KRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 492
           +R  ++   K L       +   A     L   G + ++   G FV  + GV+G    S+
Sbjct: 260 ERDRISLSIKQLQPGPWDDIEEKAPVGSVL--DGTVKRLVDFGAFVEVFAGVEGLVHISQ 317

Query: 493 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           +  +   +PS +   GQ ++ +++S  P   R+ LS 
Sbjct: 318 ISHEHIDKPSDVLKSGQKIQVKVLSIDPEEHRLALSI 354



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 149/353 (42%), Gaps = 31/353 (8%)

Query: 370 DVKPGMVVKGKVIAVDSFGA-IVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAEL-VF 426
           +VK G VV G+V+AVD+    IV   G GV+ + P   +S      P  K+ VG ++ V 
Sbjct: 18  EVKIGDVVNGEVLAVDNDQQLIVGIEGAGVEGVVPSKEVSADPDENPSDKYSVGDQIKVV 77

Query: 427 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT-KIEK--HGCFVRFYNG 483
            V  +   +   ++   L   +L  L  + E  D+      IT K+ +   G  V   +G
Sbjct: 78  VVSKIGDDKENGSY--LLSVRRLEALKIWDEIKDKESKDENITVKVTRPVKGGLVVNADG 135

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM------KPTRVS 537
           V+GF P S +  D      + Y  GQ ++ +I+  +P   R+ LS         K  R  
Sbjct: 136 VRGFIPASMI-TDHFVSDLNQYK-GQELEVKIIEVVPEENRLILSHRAIAEKNRKQAREE 193

Query: 538 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 596
             + +  G +V G V  +T     + +   G   G +    ++ DH+  A  + SV   G
Sbjct: 194 IMNNLAAGDVVEGTVARLTNFGAFIDL---GGIDGLVHISEISYDHVNKAADVLSV---G 247

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCF 653
            +   ++L ++ E   + LS     I   Q  P  D     P  SV+ G V  +++ G F
Sbjct: 248 EKVKVKVLSVEPERDRISLS-----IKQLQPGPWDDIEEKAPVGSVLDGTVKRLVDFGAF 302

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           V     + G    S+         S     GQ ++  +L ++ E  R+ LS+K
Sbjct: 303 VEVFAGVEGLVHISQISHEHIDKPSDVLKSGQKIQVKVLSIDPEEHRLALSIK 355


>gi|333990445|ref|YP_004523059.1| 30S ribosomal protein S1 [Mycobacterium sp. JDM601]
 gi|333486413|gb|AEF35805.1| ribosomal protein S1 RpsA [Mycobacterium sp. JDM601]
          Length = 479

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGRE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D ++RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAEQHVEVPDQVVAVGDDAMVKVIDIDLDRRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 152/386 (39%), Gaps = 58/386 (15%)

Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
            D  I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLTK 93

Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 576 TEHLADHLEHATVMKSV--IKP--GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD 630
                        M+ V  ++P  G E + +++ LD   +N++LS +  L  +  ++ S+
Sbjct: 153 -----------VEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSE 201

Query: 631 -ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 689
             + +   +V  G V +I+  G FV  LG + G    S+         S+   VG  V  
Sbjct: 202 FLNQLQKGAVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTV 260

Query: 690 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 749
            +LDV+ +  R++LSLK +        F + H                           I
Sbjct: 261 EVLDVDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AI 293

Query: 750 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDV 802
           G ++ GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+
Sbjct: 294 GQIVPGKVTKLVPFGAFVRVEE--GIEGLVHISELAEQHVEVPDQVVAVGDDAMVKVIDI 351

Query: 803 AKAERLVDLSLKTVFIDRFREANSNR 828
               R + LSLK    D   E + ++
Sbjct: 352 DLDRRRISLSLKQANEDYTEEFDPSK 377



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            G    S+  +       +   VG      ++D++ +  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAEQHVEVPDQVVAVGDDAMVKVIDIDLDRRRISLSLKQANEDYTEE----- 372

Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWIEGF 407


>gi|261406030|ref|YP_003242271.1| RNA-binding S1 domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261282493|gb|ACX64464.1| RNA binding S1 domain protein [Paenibacillus sp. Y412MC10]
          Length = 405

 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 171/383 (44%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1098
            G  V G + K+++  A ++I       + + +      +L        +G+ V   V+SI
Sbjct: 26   GDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRE--LSSVQLDNASDAVQVGQEVECKVVSI 83

Query: 1099 NKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1156
            N +K+ L L         S + +D  N  D ++    + D+    ++ ++ G  GLV  +
Sbjct: 84   NDDKESLVL---------SKRAIDTENSWDELEKHFADQDVFEVTVADVVKG--GLVADV 132

Query: 1157 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1216
            G   +               P S  +    +  S Y +G+ ++ KV E+ R       V 
Sbjct: 133  GARGF--------------IPASMVERHFVEDFSDY-KGRTLRVKVKELDRE---NNKVI 174

Query: 1217 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1276
            LS +  L+     N   +             + +L    +++G V+ +T  G F+ +   
Sbjct: 175  LSQKDVLEEEFEANKQKV-------------MSELQDGQVLEGTVQRLTQFGAFVDVG-G 220

Query: 1277 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS---RTASQS 1333
            +D  V +S ++  +V+ P      G  V  +VL V+P   ++ +++K +      TA + 
Sbjct: 221  VDGLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGE- 279

Query: 1334 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                    + GDIV G +KR+ ++G F+ +    + GL H+S++S  H+   + + + G+
Sbjct: 280  ------QFNTGDIVTGVVKRLVTFGAFVELA-PGVEGLVHISQISHKHIGTPQEVLKEGQ 332

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +V+VK+L ++  ++RISL +K +
Sbjct: 333  EVQVKVLDINTSEQRISLSIKET 355



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 134/361 (37%), Gaps = 50/361 (13%)

Query: 466 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 525
           G I K+E +  +V       G  P  EL        S    VGQ V+C+++S       +
Sbjct: 31  GTIVKLEDNQAYVSIGYKYDGVIPVRELSSVQLDNASDAVQVGQEVECKVVSINDDKESL 90

Query: 526 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 585
            LS     T  S D+L K  +    V +V   + V   ++A   ++G IP   +  H   
Sbjct: 91  VLSKRAIDTENSWDELEKHFAD-QDVFEVTVADVVKGGLVADVGARGFIPASMVERHFVE 149

Query: 586 ATVMKSVIKPGYEFDQLLV----LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVV 640
                      Y+   L V    LD E++ ++LS K  L    +       S +    V+
Sbjct: 150 DF-------SDYKGRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQKVMSELQDGQVL 202

Query: 641 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 700
            G V  + + G FV  +G + G    S+         S     G  VR  +L V+ E G+
Sbjct: 203 EGTVQRLTQFGAFVD-VGGVDGLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPEKGK 261

Query: 701 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 760
           I+LS+K +     + +  Q                           F  G ++ G V   
Sbjct: 262 ISLSIKAAAPGPWETAGEQ---------------------------FNTGDIVTGVVKRL 294

Query: 761 NDFGVVVSFEEHSDVYGF-----ITHHQLAGA--TVESGSVIQAAILDVAKAERLVDLSL 813
             FG  V       V G      I+H  +      ++ G  +Q  +LD+  +E+ + LS+
Sbjct: 295 VTFGAFVEL--APGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRISLSI 352

Query: 814 K 814
           K
Sbjct: 353 K 353



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S+++ G V++G V  +  FGA V   GGV  L  +  ++   + KP      G ++  +V
Sbjct: 194 SELQDGQVLEGTVQRLTQFGAFVDV-GGVDGLVHVSEIAWSHVDKPSDVLSEGDQVRVKV 252

Query: 429 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH----GCFVRFYNGV 484
           L V  ++  ++     +  K A    +  A ++  T   +T + K     G FV    GV
Sbjct: 253 LKVDPEKGKIS-----LSIKAAAPGPWETAGEQFNTGDIVTGVVKRLVTFGAFVELAPGV 307

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           +G    S++       P  +   GQ V+ +++    + +RI+LS 
Sbjct: 308 EGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRISLSI 352



 Score = 45.8 bits (107), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 313 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 372
             V +S++A   V K      EG  VRV++L     +G  +  +KA+A            
Sbjct: 223 GLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGEQFN 282

Query: 373 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 432
            G +V G V  + +FGA V+   GV+ L  +  +S   I  P +  K G E+  +VL + 
Sbjct: 283 TGDIVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDIN 342

Query: 433 S--KRITVTHKKT 443
           +  +RI+++ K+T
Sbjct: 343 TSEQRISLSIKET 355


>gi|332686551|ref|YP_004456325.1| 30S ribosomal protein S1 [Melissococcus plutonius ATCC 35311]
 gi|332370560|dbj|BAK21516.1| SSU ribosomal protein S1p [Melissococcus plutonius ATCC 35311]
          Length = 408

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 108/214 (50%), Gaps = 8/214 (3%)

Query: 1239 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1298
            D   K +E ++ L    IV+G +  +T  G FI L   +D  V +S ++  +V+ P    
Sbjct: 191  DKAAKKVEIMDHLHAGDIVEGKIARLTDFGAFIDLG-GIDGLVHVSEIAHNHVDKPSDTL 249

Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1358
             IG+ V  ++LS+ P   R+ +++K     T   +  N      VG I+ G +KR+ S+G
Sbjct: 250  TIGEDVNVKILSINPDEGRISLSIK----ETLPGAWTNIEEKAPVGSILEGTVKRLTSFG 305

Query: 1359 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418
             F+ +    + GL H+S++S  H+     +   G+ ++VK+L+V  E  R++L +K+   
Sbjct: 306  AFVEV-FPGVEGLVHISQISHKHIATPHEVLHEGDDIQVKVLEVHPEDHRLALSIKA--L 362

Query: 1419 KNDADNLQMSSEEESDEAIEEVGSYNRSSLLENS 1452
            +   D+ + S   ES E  EE   +    ++ +S
Sbjct: 363  ETKPDSQRESKNVESYELPEENTGFTMGDIIGDS 396



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 7/172 (4%)

Query: 1246 EKIE-DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1304
            E+IE D     I++  V ++   G  + +  +    V  S + D +V S   E+  GK +
Sbjct: 111  EEIEADFKEERIIEAPVTDIVKGGLVVDVGVR--GFVPASMVEDHFV-SDFSEYK-GKTL 166

Query: 1305 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1364
            A +++ +EP   R+ ++ K       +  ++  + +LH GDIV G+I R+  +G FI + 
Sbjct: 167  AVKIIEIEPSENRLILSHKAVVENDKAAKKVEIMDHLHAGDIVEGKIARLTDFGAFIDLG 226

Query: 1365 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
              +  GL HVSE++ +HVD        GE V VKIL ++ ++ RISL +K +
Sbjct: 227  GID--GLVHVSEIAHNHVDKPSDTLTIGEDVNVKILSINPDEGRISLSIKET 276



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 155/383 (40%), Gaps = 58/383 (15%)

Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFY-NGVQGFAPRSELGLDPGCEPSSMYHVGQV 510
           ++S  E T   I  G +  IE     V     G++G  P  EL        +    +G  
Sbjct: 20  INSVQEVTIGDIVKGEVLAIEDKQIIVGIEGTGIEGIVPAKELSTSYVENINDFVKIGDK 79

Query: 511 VKCRIMSSIPASRRINLSFMMKPTRVS--------EDDLVKLGSLVSGVVDVVTPNAVVV 562
           +   ++SSI   +  N ++++   R+         E D  +   + + V D+V    +VV
Sbjct: 80  LDLVVISSIGKDKE-NGNYLLSKRRLDAKKVWEEIEADFKEERIIEAPVTDIVK-GGLVV 137

Query: 563 YVIAKGYSKGTIPTEH-LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 621
            V  +G+   ++  +H ++D  E+     +V        +++ ++   + L+LS K  + 
Sbjct: 138 DVGVRGFVPASMVEDHFVSDFSEYKGKTLAV--------KIIEIEPSENRLILSHKAVVE 189

Query: 622 NS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 680
           N  A +      H+H   +V G +  + + G F+  LG + G    S+         S T
Sbjct: 190 NDKAAKKVEIMDHLHAGDIVEGKIARLTDFGAFID-LGGIDGLVHVSEIAHNHVDKPSDT 248

Query: 681 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 740
             +G+ V   IL +N + GRI+LS+K++   +           +EEK             
Sbjct: 249 LTIGEDVNVKILSINPDEGRISLSIKETLPGAWTN--------IEEKAP----------- 289

Query: 741 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF-----ITHHQLAGA--TVESGS 793
                   +GS++EG V     FG  V  E    V G      I+H  +A     +  G 
Sbjct: 290 --------VGSILEGTVKRLTSFGAFV--EVFPGVEGLVHISQISHKHIATPHEVLHEGD 339

Query: 794 VIQAAILDVAKAERLVDLSLKTV 816
            IQ  +L+V   +  + LS+K +
Sbjct: 340 DIQVKVLEVHPEDHRLALSIKAL 362



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+GK+  +  FGA +   GG+  L  +  ++   + KP     +G ++  ++L +  
Sbjct: 206 GDIVEGKIARLTDFGAFIDL-GGIDGLVHVSEIAHNHVDKPSDTLTIGEDVNVKILSINP 264

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
              RI+++ K+TL  +   I       +   I  G + ++   G FV  + GV+G    S
Sbjct: 265 DEGRISLSIKETLPGAWTNIEEKAPVGS---ILEGTVKRLTSFGAFVEVFPGVEGLVHIS 321

Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
           ++       P  + H G  ++ +++   P   R+ LS     T+
Sbjct: 322 QISHKHIATPHEVLHEGDDIQVKVLEVHPEDHRLALSIKALETK 365



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 187/437 (42%), Gaps = 78/437 (17%)

Query: 938  VGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 996
            +G +V+ E+  I+  ++ +   G G  G +   E++   ++ VEN+    KIG  +   +
Sbjct: 28   IGDIVKGEVLAIEDKQIIVGIEGTGIEGIVPAKELS---TSYVENINDFVKIGDKLDLVV 84

Query: 997  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1056
            I+   K     ++L         L+   + +K ++EE +    +         D     L
Sbjct: 85   ISSIGKDKENGNYL---------LSKRRLDAKKVWEEIEADFKEERIIEAPVTDIVKGGL 135

Query: 1057 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1116
             +   ++   F+  S  E   + +F    + GK +   ++ I   +   RL+L       
Sbjct: 136  VVDVGVRG--FVPASMVEDHFVSDFSE--YKGKTLAVKIIEIEPSEN--RLIL------- 182

Query: 1117 SDKTVDISND------NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1170
            S K V + ND       +   +H GDIV G+I++ L+  G  +   G  + G VH +E+ 
Sbjct: 183  SHKAV-VENDKAAKKVEIMDHLHAGDIVEGKIAR-LTDFGAFIDLGG--IDGLVHVSEIA 238

Query: 1171 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1230
            +  V  P         D L+    G+ V  K+L I+        + LS++ +L G + TN
Sbjct: 239  HNHVDKP--------SDTLT---IGEDVNVKILSINPD---EGRISLSIKETLPG-AWTN 283

Query: 1231 SSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1289
                             IE+ +P   I++G VK +TS G F+ +   ++  V +S +S  
Sbjct: 284  -----------------IEEKAPVGSILEGTVKRLTSFGAFVEVFPGVEGLVHISQISHK 326

Query: 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL---------SN 1340
            ++ +P +    G  +  +VL V P   R+ +++K  +++  SQ E  N+         + 
Sbjct: 327  HIATPHEVLHEGDDIQVKVLEVHPEDHRLALSIKALETKPDSQRESKNVESYELPEENTG 386

Query: 1341 LHVGDIVIGQIKRVESY 1357
              +GDI+   +K  E +
Sbjct: 387  FTMGDIIGDSLKEQEDH 403



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 144/359 (40%), Gaps = 23/359 (6%)

Query: 359 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKK 417
           +  E  + +  +V  G +VKG+V+A++    IV   G G++ + P   +S   +      
Sbjct: 14  ATMEEAINSVQEVTIGDIVKGEVLAIEDKQIIVGIEGTGIEGIVPAKELSTSYVENINDF 73

Query: 418 FKVGAEL---VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 474
            K+G +L   V   +G   +       K  + +K       A+  +  I    +T I K 
Sbjct: 74  VKIGDKLDLVVISSIGKDKENGNYLLSKRRLDAKKVWEEIEADFKEERIIEAPVTDIVKG 133

Query: 475 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--- 531
           G  V    GV+GF P S +  D      S Y  G+ +  +I+   P+  R+ LS      
Sbjct: 134 GLVVDV--GVRGFVPAS-MVEDHFVSDFSEYK-GKTLAVKIIEIEPSENRLILSHKAVVE 189

Query: 532 ---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 588
                 +V   D +  G +V G +  +T     + +   G   G +    +A +  H   
Sbjct: 190 NDKAAKKVEIMDHLHAGDIVEGKIARLTDFGAFIDL---GGIDGLVHVSEIAHN--HVDK 244

Query: 589 MKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 647
               +  G + + ++L ++ +   + LS K +L  +   +   A      S++ G V  +
Sbjct: 245 PSDTLTIGEDVNVKILSINPDEGRISLSIKETLPGAWTNIEEKAP---VGSILEGTVKRL 301

Query: 648 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
              G FV     + G    S+      A   +  + G  ++  +L+V+ E  R+ LS+K
Sbjct: 302 TSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDDIQVKVLEVHPEDHRLALSIK 360



 Score = 43.9 bits (102), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 1323 KTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1381
            K   S  A+  E IN++  + +GDIV G++  +E   + + IE T + G+    ELS  +
Sbjct: 7    KQEKSENATMEEAINSVQEVTIGDIVKGEVLAIEDKQIIVGIEGTGIEGIVPAKELSTSY 66

Query: 1382 VDNIETIYRAGEKVKVKIL 1400
            V+NI    + G+K+ + ++
Sbjct: 67   VENINDFVKIGDKLDLVVI 85


>gi|408829074|ref|ZP_11213964.1| 30S ribosomal protein S1 [Streptomyces somaliensis DSM 40738]
          Length = 499

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|423637751|ref|ZP_17613404.1| ribosomal protein S1 [Bacillus cereus VD156]
 gi|401273012|gb|EJR79000.1| ribosomal protein S1 [Bacillus cereus VD156]
          Length = 382

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G IKR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVIKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   ++RI+++ K          ++   +A D  I  G I ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKAGD--IREGVIKRLVTFGAFVEILPGVEG 299

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 539
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G +K + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVIKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|297571464|ref|YP_003697238.1| RNA binding S1 domain-containing protein [Arcanobacterium
            haemolyticum DSM 20595]
 gi|296931811|gb|ADH92619.1| RNA binding S1 domain protein [Arcanobacterium haemolyticum DSM
            20595]
          Length = 489

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 139/287 (48%), Gaps = 42/287 (14%)

Query: 1132 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1190
            I E D +V G + +++ G  GL++ IG   +      E++ +    P  G +        
Sbjct: 118  IKEADGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE-------- 167

Query: 1191 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1250
                   ++ K++E+ +      +V LS RS L+    T S   ST ++T          
Sbjct: 168  -------IEAKIIELDKNRN---NVVLSRRSWLE---QTQSEVRSTFLNT---------- 204

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L    +  G + ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL 
Sbjct: 205  LQKGQVRDGVISSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGTPVTVEVLE 263

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLV 1369
            V+   +RV ++LK +      +      +  H +  +V G++ ++  +G F+ +E+  + 
Sbjct: 264  VDMDRERVSLSLKAT-----QEDPWQTFARTHAISQVVPGKVTKLVPFGAFVRVED-GIE 317

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            GL H+SEL++ HVD  E + + G+ V VK++ +D ++RRISL +K +
Sbjct: 318  GLVHISELAQRHVDLPEQVVKVGDDVFVKVIDIDLDRRRISLSLKQA 364



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           ++ G V  G + ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   VL 
Sbjct: 205 LQKGQVRDGVISSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGTPVTVEVLE 263

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
           V    +R++++ K T          ++A +    +  G +TK+   G FVR  +G++G  
Sbjct: 264 VDMDRERVSLSLKATQEDPWQTFARTHAISQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 320

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 321 HISELAQRHVDLPEQVVKVGDDVFVKVIDIDLDRRRISLSL 361



 Score = 40.4 bits (93), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 128/288 (44%), Gaps = 29/288 (10%)

Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +   A +    EA D ++T G + ++ K G  +    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWAKIEEIKEA-DGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 150

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 151 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRSWLEQTQSEVRSTFLNTLQ 206

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 602
            G +  GV+  +      V +   G   G +    L+  H++H + +  V  P     ++
Sbjct: 207 KGQVRDGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGTPVTV--EV 261

Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS-VVHGYVCNIIETGCFVRFLGRLT 661
           L +D +   + LS K +  +  Q      +  H  S VV G V  ++  G FVR    + 
Sbjct: 262 LEVDMDRERVSLSLKATQEDPWQTF----ARTHAISQVVPGKVTKLVPFGAFVRVEDGIE 317

Query: 662 GFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+    +  DL  +   VG  V   ++D++ +  RI+LSLKQ+
Sbjct: 318 GLVHISELAQ-RHVDLPEQVVKVGDDVFVKVIDIDLDRRRISLSLKQA 364


>gi|227505035|ref|ZP_03935084.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
 gi|227198399|gb|EEI78447.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
          Length = 486

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 175/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAVEELHAKEEPVTGTVIEVVKG--GLIL 138

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +   +P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG---------------QELEAKIIELDKQRN---N 180

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAFLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 282  WRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVTVGQ 340

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +V VK++ +D E+RRISL +K +
Sbjct: 341  EVMVKVIDIDLERRRISLSVKQA 363



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           ++G    SEL       P  +  VGQ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLS 359



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +     A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAVEEL-HAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+          +   VGQ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLSVKQA-----DEDYTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W+EG+
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDPETNEWLEGY 405


>gi|408532678|emb|CCK30852.1| 30S ribosomal protein S1 [Streptomyces davawensis JCM 4913]
          Length = 498

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 187/416 (44%), Gaps = 66/416 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 375



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|196039027|ref|ZP_03106334.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
 gi|196030172|gb|EDX68772.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
          Length = 382

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 177/394 (44%), Gaps = 64/394 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGETLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVGGEVKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 539
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354



 Score = 41.2 bits (95), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 103/229 (44%), Gaps = 40/229 (17%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ      
Sbjct: 186  LKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK----- 237

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
                  VK KVL +      T  + LS++++                  PG       ++
Sbjct: 238  ------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWENVGGEV 271

Query: 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1311
                I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  +VL V
Sbjct: 272  KAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEV 331

Query: 1312 EPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
                KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 332  HVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|302550706|ref|ZP_07303048.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736]
 gi|302468324|gb|EFL31417.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736]
          Length = 497

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|423392104|ref|ZP_17369330.1| ribosomal protein S1 [Bacillus cereus BAG1X1-3]
 gi|401637937|gb|EJS55690.1| ribosomal protein S1 [Bacillus cereus BAG1X1-3]
          Length = 382

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEENDLVLSKRAVDAEKAWVELQEKFNSGYVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 43.9 bits (102), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 127/294 (43%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|384449426|ref|YP_005662028.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae LPCoLN]
 gi|269303190|gb|ACZ33290.1| ribosomal protein S1 [Chlamydophila pneumoniae LPCoLN]
          Length = 580

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 73/401 (18%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            +SIG+   G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVLGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPSEVVNKGDEVEAIVL 361

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVNAEIKN 401

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGV 461

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K   S   ++ E    +    G ++ G + ++ ++G F+ ++N  + GL HVSELS+   
Sbjct: 462  KQLSSNPWNEIE----AMFPAGTVISGVVTKITAFGAFVELQN-GIEGLIHVSELSDKPF 516

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
              IE I   GE V  K++K+D + +++SL +K     N  D
Sbjct: 517  AKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNAYD 557



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 140/296 (47%), Gaps = 43/296 (14%)

Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
             EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y
Sbjct: 132  EEGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY 175

Query: 1193 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
              G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE +S
Sbjct: 176  -VGKVCEFKILKINVERR---NVVVSRRELLEAERISKKAEL-------------IEQIS 218

Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
                 +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+
Sbjct: 219  IGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVD 277

Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
                RV + LK  +       E         G  V+G+I ++  YG FI IE   + GL 
Sbjct: 278  KEKGRVALGLKQKEHNPWEDIE----KKYPPGKRVLGKIVKLLPYGAFIEIEE-GIEGLI 332

Query: 1373 HVSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            HVSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 333  HVSEMSWVKNIVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 431
           G+ V  ++  + ++GA V+   G++ L  +  MS  + V  P + FK G  +   +L V 
Sbjct: 392 GLHVNAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVD 451

Query: 432 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
            +SK+IT+  K+        I + +   T   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEAMFPAGT---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           SEL   P  +   +  +G+ V  +++   P  ++++LS
Sbjct: 509 SELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLS 546



 Score = 45.1 bits (105), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 140/350 (40%), Gaps = 32/350 (9%)

Query: 378 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 435
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGVVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGR 282

Query: 436 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 495
           + +  K+        I   Y      L   G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPGKRVL---GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 496 DPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 550
                +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V+ 
Sbjct: 340 VKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVNA 397

Query: 551 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 603
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGNSVEAVIL 448

Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
            +D ES  + L  K    N   ++    +     +V+ G V  I   G FV     + G 
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI---EAMFPAGTVISGVVTKITAFGAFVELQNGIEGL 505

Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
              S+  D   A +     +G++V + ++ ++ +  +++LS+K+    + 
Sbjct: 506 IHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNA 555



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 95/478 (19%), Positives = 193/478 (40%), Gaps = 72/478 (15%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           + ++++PG ++KG V+ ++    +V    G+K+   +P MSEF  +   +   +GAE+  
Sbjct: 45  SDNEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLVLGAEVEV 99

Query: 427 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
            +   + +  ++ ++ +K   + +   + ++ E     I  G IT+  K G  V    G+
Sbjct: 100 YLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GM 155

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED-- 539
           + F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+   
Sbjct: 156 EAFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVERRNVVVSRRELLEAERISKKAE 212

Query: 540 --DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 597
             + + +G    GVV  +T   V  ++   G       T+     + H + M        
Sbjct: 213 LIEQISIGEYRKGVVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------V 263

Query: 598 EFDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 652
           E +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G 
Sbjct: 264 ELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVLGKIVKLLPYGA 320

Query: 653 FVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           F+     + G    S+    +   D S+    G  V + +L +  + G+I+L LKQ+  +
Sbjct: 321 FIEIEEGIEGLIHVSEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHN 380

Query: 712 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 771
             D         +EEK                   + IG  +  ++    ++G  V  E 
Sbjct: 381 PWDN--------IEEK-------------------YPIGLHVNAEIKNLTNYGAFVELEP 413

Query: 772 ------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                 H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 414 GIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNE 471


>gi|418619939|ref|ZP_13182750.1| 30S ribosomal protein S1 [Staphylococcus hominis VCU122]
 gi|374823502|gb|EHR87497.1| 30S ribosomal protein S1 [Staphylococcus hominis VCU122]
          Length = 393

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 96/174 (55%), Gaps = 6/174 (3%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            ++ L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 189  LDSLNEGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVQSPEDVVSVGQEVDVK 247

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            V SVE  ++R+ +++K     T      N     H  D++ G++ R+ ++G F+ I    
Sbjct: 248  VKSVEKDTERISLSIKD----TLPTPFENIKGKFHENDVIEGKVIRLANFGAFVEIA-PG 302

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            + GL H+SE++  H+     +   G++V VKIL +D+E  RISL +K++    D
Sbjct: 303  VQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDEENERISLSIKATLPNED 356



 Score = 68.6 bits (166), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +D+K G  V GKV  V+    +V   G     + P+  +S   I  P +    G E+   
Sbjct: 12  NDIKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAY 71

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 72  VTKIEIDEANESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDV--G 129

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 130 QRGFVPASLISTD-FIEDFSVFE-GQTIRLKVEELDPENNRVILS--RKAVEQAENDVKK 185

Query: 544 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
                    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 186 ASLLDSLNEGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVQSPEDVVSV 240

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
           G E D ++  ++ ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 241 GQEVDVKVKSVEKDTERISLSIKDTLPTPFENI---KGKFHENDVIEGKVIRLANFGAFV 297

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
                + G    S+         S+    GQ V   IL ++ E  RI+LS+K + 
Sbjct: 298 EIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDEENERISLSIKATL 352



 Score = 44.7 bits (104), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 116/292 (39%), Gaps = 59/292 (20%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
           +K G  V+G V  V    VVV++    Y+ G IP   L+ H  H      +I  G E + 
Sbjct: 14  IKEGDKVTGKVQQVEDKQVVVHIDGAKYN-GIIPISQLSTH--HIENPSEIISEGDEIEA 70

Query: 602 LLV---LD--NESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIET 650
            +    +D  NES   +LS +        QL ++ S+      +  + V+   V  +++ 
Sbjct: 71  YVTKIEIDEANESGAYILSKR--------QLETEKSYEYLQEKLDNDEVIEAKVTEVVKG 122

Query: 651 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710
           G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    
Sbjct: 123 GLVVDVGQR--GFVPASLISTDFIEDFS--VFEGQTIRLKVEELDPENNRVILSRKAVEQ 178

Query: 711 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 770
           +  D           +K ++L S                G VI+GKV    +FG  V   
Sbjct: 179 AENDV----------KKASLLDSLNE-------------GDVIKGKVARLTNFGAFVDI- 214

Query: 771 EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
               V G +   +L+   V+S         DV    + VD+ +K+V  D  R
Sbjct: 215 --GGVDGLVHVSELSHEHVQSPE-------DVVSVGQEVDVKVKSVEKDTER 257



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 162/393 (41%), Gaps = 80/393 (20%)

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 159
           ++EG  +T  V+ +ED   ++H     + G +P + L+    EN    +  G  ++  V 
Sbjct: 14  IKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAYVT 73

Query: 160 -----------------RSIDRTRKVVYLSS--DPDTVSKC-VTKDLKG-ISIDL----L 194
                            R ++  +   YL    D D V +  VT+ +KG + +D+     
Sbjct: 74  KIEIDEANESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDVGQRGF 133

Query: 195 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 254
           VP  ++ST           +   + F G      ++   P  N             R++ 
Sbjct: 134 VPASLISTD---------FIEDFSVFEGQTIRLKVEELDPENN-------------RVIL 171

Query: 255 VDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 314
              + +AV    N   +   +    +  GD+  + KV R+    G  +DI          
Sbjct: 172 ---SRKAVEQAEND--VKKASLLDSLNEGDVI-KGKVARL-TNFGAFVDIGGVD----GL 220

Query: 315 VTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLV--FTHS 369
           V +S+++ E V+  E     G  V V++    +  E ++  I     + FE +   F  +
Sbjct: 221 VHVSELSHEHVQSPEDVVSVGQEVDVKVKSVEKDTERISLSIKDTLPTPFENIKGKFHEN 280

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           DV     ++GKVI + +FGA V+   GV+ L  +  ++   I  P +  + G ++  ++L
Sbjct: 281 DV-----IEGKVIRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKIL 335

Query: 430 GV--KSKRITVTHKKTL-----VKSKLAILSSY 455
           G+  +++RI+++ K TL     ++S  A   SY
Sbjct: 336 GIDEENERISLSIKATLPNEDVIESDEATTQSY 368


>gi|228984676|ref|ZP_04144849.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar tochigiensis
            BGSC 4Y1]
 gi|228775070|gb|EEM23463.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar tochigiensis
            BGSC 4Y1]
          Length = 382

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 130/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K +          SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVIEDYSQYEPNADSATFQLSDIIGEQLKKL 380



 Score = 40.4 bits (93), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 29/356 (8%)

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
             +V+ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKVIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 538
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 539 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 596
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 653
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
           V  L  + G    S+  +    + ++   +GQ V+  +L+V+    RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAL 346


>gi|453378894|dbj|GAC86206.1| 30S ribosomal protein S1 [Gordonia paraffinivorans NBRC 108238]
          Length = 483

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 183/414 (44%), Gaps = 64/414 (15%)

Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
            +I    + V++IG+   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  V-DEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 158/410 (38%), Gaps = 50/410 (12%)

Query: 431 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
           + S ++ V    T      AI S+     D  I  G I K+++    +      +G  P 
Sbjct: 6   ISSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPS 65

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSL 547
            EL +    +P  +  VG  V+  +++      R+ LS      +    + ++L +    
Sbjct: 66  RELSIKHDVDPHEVVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEA 125

Query: 548 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 606
           V G V  V    +++ +  +G+   ++        +E   V       G E + +++ LD
Sbjct: 126 VKGTVIEVVKGGLILDIGLRGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELD 177

Query: 607 NESSNLLLSAKYSLINSAQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 665
              +N++LS +  L  +  ++ S+  H +    V  G V +I+  G FV  LG + G   
Sbjct: 178 KNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVH 236

Query: 666 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 725
            S+         S+   VG  V   +LDV+ +  R++LSLK +        F + H    
Sbjct: 237 VSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH---- 291

Query: 726 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 785
                                  IG ++ GKV +   FG  V  +E   + G +   +LA
Sbjct: 292 ----------------------AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELA 327

Query: 786 GATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 828
              VE        G      ++D+    R + LSLK    D   E + ++
Sbjct: 328 ERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 31/354 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLTKED 95

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|403238099|ref|ZP_10916685.1| 30S ribosomal protein S1 [Bacillus sp. 10403023]
          Length = 378

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 104/186 (55%), Gaps = 6/186 (3%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            ++ L    +++G V+ +T  G F+ +   +D  V +S LS  +V  P      G+++  +
Sbjct: 182  LDSLQVGAVLEGTVQRLTDFGAFVDIG-GIDGLVHISQLSHEHVSKPSDVVEEGQVIKVK 240

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            VLSV+  ++R+ +++K     T      N    + VGD+V G++KR+ S+G F+ +    
Sbjct: 241  VLSVDRDNERISLSVK----ETLPGPWENIAEKISVGDVVDGKVKRLVSFGAFVEV-LPG 295

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1427
            + GL H+S++S  H+     + + G++V+VK+L++++ ++RISL MK      + D  Q 
Sbjct: 296  VEGLVHISQISSKHIGTPHEVLKEGQEVQVKVLELNESEKRISLSMKELEVNVEEDYSQY 355

Query: 1428 SSEEES 1433
              ++E+
Sbjct: 356  QQQDET 361



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 44/65 (67%)

Query: 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
            L VGD++ G++ +VE   +F+++EN+ L G+  +SELS  HV+    +   GE++++ + 
Sbjct: 13   LQVGDVITGKVTKVEEKQVFVSVENSKLDGIIPISELSSLHVEKASDVVSEGEELELSVT 72

Query: 1401 KVDKE 1405
            KV++E
Sbjct: 73   KVEEE 77



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 10/170 (5%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
           G V++G V  +  FGA V   GG+  L  +  +S   + KP    + G  +  +VL V  
Sbjct: 188 GAVLEGTVQRLTDFGAFVDI-GGIDGLVHISQLSHEHVSKPSDVVEEGQVIKVKVLSVDR 246

Query: 433 -SKRITVTHKKTLVK--SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 489
            ++RI+++ K+TL      +A   S  +  D     G + ++   G FV    GV+G   
Sbjct: 247 DNERISLSVKETLPGPWENIAEKISVGDVVD-----GKVKRLVSFGAFVEVLPGVEGLVH 301

Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
            S++       P  +   GQ V+ +++    + +RI+LS       V ED
Sbjct: 302 ISQISSKHIGTPHEVLKEGQEVQVKVLELNESEKRISLSMKELEVNVEED 351



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 143/359 (39%), Gaps = 44/359 (12%)

Query: 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
           + +++ G V+ GKV  V+     V      +  + P+  +S   + K       G EL  
Sbjct: 10  YKELQVGDVITGKVTKVEEKQVFVSVENSKLDGIIPISELSSLHVEKASDVVSEGEELEL 69

Query: 427 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFV 478
            V        T   ++ L+ SK A+L+S  +A D L        +    +  + K G  V
Sbjct: 70  SV--------TKVEEEALILSKKAVLAS--KAWDDLEQKFNTGEVFEAVVKDVVKGGLVV 119

Query: 479 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 538
               GV+GF P S L  +   E  S Y      K   +  +   R  N   +     V E
Sbjct: 120 DL--GVRGFIPAS-LVENYYVEDFSDYKD----KALTVKVVELDREKNRVILSHRAVVEE 172

Query: 539 D---------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 589
           +         D +++G+++ G V  +T     V +   G   G +    L+   EH +  
Sbjct: 173 EQKNKKQHVLDSLQVGAVLEGTVQRLTDFGAFVDI---GGIDGLVHISQLSH--EHVSKP 227

Query: 590 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 648
             V++ G     ++L +D ++  + LS K +L    + +   A  I    VV G V  ++
Sbjct: 228 SDVVEEGQVIKVKVLSVDRDNERISLSVKETLPGPWENI---AEKISVGDVVDGKVKRLV 284

Query: 649 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
             G FV  L  + G    S+          +    GQ V+  +L++N    RI+LS+K+
Sbjct: 285 SFGAFVEVLPGVEGLVHISQISSKHIGTPHEVLKEGQEVQVKVLELNESEKRISLSMKE 343



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 111/281 (39%), Gaps = 45/281 (16%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 600
           +++G +++G V  V    V V V       G IP   L+  H+E A+    V+  G E  
Sbjct: 13  LQVGDVITGKVTKVEEKQVFVSV-ENSKLDGIIPISELSSLHVEKAS---DVVSEGEEL- 67

Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 660
           +L V   E   L+LS K  L + A          +   V    V ++++ G  V    R 
Sbjct: 68  ELSVTKVEEEALILSKKAVLASKA--WDDLEQKFNTGEVFEAVVKDVVKGGLVVDLGVR- 124

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
            GF P S   +    D S   Y  +++   +++++ E  R+ LS         +    ++
Sbjct: 125 -GFIPASLVENYYVEDFSD--YKDKALTVKVVELDREKNRVILS--HRAVVEEEQKNKKQ 179

Query: 721 HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 780
           H L                     +   +G+V+EG V    DFG   +F +   + G + 
Sbjct: 180 HVL---------------------DSLQVGAVLEGTVQRLTDFG---AFVDIGGIDGLVH 215

Query: 781 HHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLK 814
             QL+          VE G VI+  +L V +    + LS+K
Sbjct: 216 ISQLSHEHVSKPSDVVEEGQVIKVKVLSVDRDNERISLSVK 256



 Score = 40.8 bits (94), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 8/135 (5%)

Query: 313 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLVFTHS 369
             V IS ++ E V K     +EG  ++V++L   R  E ++  + +     +E +     
Sbjct: 212 GLVHISQLSHEHVSKPSDVVEEGQVIKVKVLSVDRDNERISLSVKETLPGPWENIA---E 268

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
            +  G VV GKV  + SFGA V+   GV+ L  +  +S   I  P +  K G E+  +VL
Sbjct: 269 KISVGDVVDGKVKRLVSFGAFVEVLPGVEGLVHISQISSKHIGTPHEVLKEGQEVQVKVL 328

Query: 430 GVK--SKRITVTHKK 442
            +    KRI+++ K+
Sbjct: 329 ELNESEKRISLSMKE 343


>gi|228476148|ref|ZP_04060856.1| 30S ribosomal protein S1 homolog [Staphylococcus hominis SK119]
 gi|228269971|gb|EEK11451.1| 30S ribosomal protein S1 homolog [Staphylococcus hominis SK119]
          Length = 393

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 96/174 (55%), Gaps = 6/174 (3%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            ++ L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 189  LDSLNEGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVQSPEDVVSVGQEVDVK 247

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            V SVE  ++R+ +++K     T      N     H  D++ G++ R+ ++G F+ I    
Sbjct: 248  VKSVEKDTERISLSIKD----TLPTPFENIKGKFHENDVIEGKVIRLANFGAFVEIA-PG 302

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            + GL H+SE++  H+     +   G++V VKIL +D+E  RISL +K++    D
Sbjct: 303  VQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDEENERISLSIKATLPNED 356



 Score = 68.2 bits (165), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
           +D+K G  V GKV  V+    +V   G     + P+  +S   I  P +    G E+   
Sbjct: 12  NDIKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAY 71

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 72  VTKIEIDEENESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDV--G 129

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 130 QRGFVPASLISTD-FIEDFSVFE-GQTIRLKVEELDPENNRVILS--RKAVEQAENDVKK 185

Query: 544 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
                    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 186 ASLLDSLNEGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVQSPEDVVSV 240

Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
           G E D ++  ++ ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 241 GQEVDVKVKSVEKDTERISLSIKDTLPTPFENI---KGKFHENDVIEGKVIRLANFGAFV 297

Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
                + G    S+         S+    GQ V   IL ++ E  RI+LS+K + 
Sbjct: 298 EIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDEENERISLSIKATL 352



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 92/170 (54%), Gaps = 10/170 (5%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
            E L  + +++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 104  EKLDNDEVIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFEGQTIRL 157

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
            +V  ++P + RV ++ K  +       + + L +L+ GD++ G++ R+ ++G F+ I   
Sbjct: 158  KVEELDPENNRVILSRKAVEQAENDVKKASLLDSLNEGDVIKGKVARLTNFGAFVDIGGV 217

Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            +  GL HVSELS +HV + E +   G++V VK+  V+K+  RISL +K +
Sbjct: 218  D--GLVHVSELSHEHVQSPEDVVSVGQEVDVKVKSVEKDTERISLSIKDT 265



 Score = 45.8 bits (107), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 116/290 (40%), Gaps = 55/290 (18%)

Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
           +K G  V+G V  V    VVV++    Y+ G IP   L+ H  H      +I  G E + 
Sbjct: 14  IKEGDKVTGKVQQVEDKQVVVHIDGAKYN-GIIPISQLSTH--HIENPSEIISEGDEIEA 70

Query: 602 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 652
            +    +D E+     S  Y L  S +QL ++ S+      +  + V+   V  +++ G 
Sbjct: 71  YVTKIEIDEENE----SGAYIL--SKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGL 124

Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    + 
Sbjct: 125 VVDVGQR--GFVPASLISTDFIEDFS--VFEGQTIRLKVEELDPENNRVILSRKAVEQAE 180

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 772
            D           +K ++L S                G VI+GKV    +FG  V     
Sbjct: 181 NDV----------KKASLLDSLNE-------------GDVIKGKVARLTNFGAFVDI--- 214

Query: 773 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
             V G +   +L+   V+S         DV    + VD+ +K+V  D  R
Sbjct: 215 GGVDGLVHVSELSHEHVQSPE-------DVVSVGQEVDVKVKSVEKDTER 257



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 162/393 (41%), Gaps = 80/393 (20%)

Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 159
           ++EG  +T  V+ +ED   ++H     + G +P + L+    EN    +  G  ++  V 
Sbjct: 14  IKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAYVT 73

Query: 160 -----------------RSIDRTRKVVYLSS--DPDTVSKC-VTKDLKG-ISIDL----L 194
                            R ++  +   YL    D D V +  VT+ +KG + +D+     
Sbjct: 74  KIEIDEENESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDVGQRGF 133

Query: 195 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 254
           VP  ++ST           +   + F G      ++   P  N             R++ 
Sbjct: 134 VPASLISTD---------FIEDFSVFEGQTIRLKVEELDPENN-------------RVIL 171

Query: 255 VDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 314
              + +AV    N   +   +    +  GD+  + KV R+    G  +DI          
Sbjct: 172 ---SRKAVEQAEND--VKKASLLDSLNEGDVI-KGKVARL-TNFGAFVDIGGVD----GL 220

Query: 315 VTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLV--FTHS 369
           V +S+++ E V+  E     G  V V++    +  E ++  I     + FE +   F  +
Sbjct: 221 VHVSELSHEHVQSPEDVVSVGQEVDVKVKSVEKDTERISLSIKDTLPTPFENIKGKFHEN 280

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           DV     ++GKVI + +FGA V+   GV+ L  +  ++   I  P +  + G ++  ++L
Sbjct: 281 DV-----IEGKVIRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKIL 335

Query: 430 GV--KSKRITVTHKKTL-----VKSKLAILSSY 455
           G+  +++RI+++ K TL     ++S  A   SY
Sbjct: 336 GIDEENERISLSIKATLPNEDVIESDEATTQSY 368


>gi|408677342|ref|YP_006877169.1| SSU ribosomal protein S1p [Streptomyces venezuelae ATCC 10712]
 gi|328881671|emb|CCA54910.1| SSU ribosomal protein S1p [Streptomyces venezuelae ATCC 10712]
          Length = 503

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 16   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 75

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 76   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 122

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 123  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 173

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 174  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 210

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 211  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 267

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 268  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 321

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 322  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 370



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 41  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 100

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 157 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 212

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 323

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 324 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 373


>gi|302561209|ref|ZP_07313551.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000]
 gi|302478827|gb|EFL41920.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000]
          Length = 497

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|291440269|ref|ZP_06579659.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
 gi|291343164|gb|EFE70120.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
          Length = 497

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|445064615|ref|ZP_21376633.1| 30S ribosomal protein S1 [Brachyspira hampsonii 30599]
 gi|444504009|gb|ELV04753.1| 30S ribosomal protein S1 [Brachyspira hampsonii 30599]
          Length = 554

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 151/340 (44%), Gaps = 19/340 (5%)

Query: 376 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 433
           ++ GKV  ++ FGA V+   G      +P+MS  ++V P      G E +F+VL +  ++
Sbjct: 194 IINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVVNPKSIISKGEERMFKVLHIDKEN 253

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
           K++ +  K+         +  Y       +  G +T ++K G FV+  +G++G    S+L
Sbjct: 254 KKVDLGIKQLDEDPWGKFVEQYQIGD---VIQGEVTNVKKFGAFVKVADGIEGLVHVSDL 310

Query: 494 GLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVS 549
             +     P+     G  ++C+I+    A R++ L        P    E D   + S V 
Sbjct: 311 SWNSHVNNPADFVKKGAFLECKILDMNAAERKLTLGLKQVKENPWDTVEKDF-PVKSAVK 369

Query: 550 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDNE 608
             V  +  N   V+ +  G  +G        D   +   MK  +K G E + +++ +D +
Sbjct: 370 CKVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVNMKDYVKEGEEANMVIMSIDRD 426

Query: 609 SSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTGFAPRS 667
              + LS K++  +S  +L   A   HP  S+V G V  I+++G  +     L G+   S
Sbjct: 427 KQRIKLSYKHTK-DSPWRLFEKA---HPQGSIVDGTVKAIVDSGAIIALEDDLEGYMHIS 482

Query: 668 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
           +    + + L     VG++    + +VN    RI+LS ++
Sbjct: 483 QVEIPKGSTLEDVLKVGETYPFVVREVNKSKRRISLSRRE 522



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 92/168 (54%), Gaps = 6/168 (3%)

Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
            + +L  N I+ G VKN+   G F+ ++   D  + + N+S   V +P+     G+    +
Sbjct: 186  LNNLQENDIINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVVNPKSIISKGEERMFK 245

Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
            VL ++  +K+V++ +K  D     +     +    +GD++ G++  V+ +G F+ + +  
Sbjct: 246  VLHIDKENKKVDLGIKQLDEDPWGKF----VEQYQIGDVIQGEVTNVKKFGAFVKVAD-G 300

Query: 1368 LVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  IEGLVHVSDLSWNSHVNNPADFVKKGAFLECKILDMNAAERKLTLGLK 348



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 111/540 (20%), Positives = 198/540 (36%), Gaps = 80/540 (14%)

Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP--GCEPSSMYHVGQVVKCRIMSSIP 520
           I  G + + +    F+ F +  +G   RSE   +P  G E  ++          I+S   
Sbjct: 31  IVKGKVVQFDDTDVFIDFDSKSEGKIKRSEFDKEPIIGEEIEAIVSGEDDKGYVILSKSE 90

Query: 521 ASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 580
             +R +   +        D+ VK  + V+GVV  V      V ++     +   P   + 
Sbjct: 91  IDKRKSQELI--------DNAVKNNTSVTGVVKEVVKGGFKVSIMG---HQAFCPFSQI- 138

Query: 581 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNS 638
             L         I   YEF    V+     ++++S +  L+  AQ   + +  +++  N 
Sbjct: 139 -DLARGIKESDYIGKEYEF---RVIKKNGRDVVVSRRV-LLEEAQNAGIETFLNNLQEND 193

Query: 639 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 698
           +++G V NI + G FV       GF         +  +       G+     +L ++ E 
Sbjct: 194 IINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVVNPKSIISKGEERMFKVLHIDKEN 253

Query: 699 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 758
            ++ L +KQ               L E+               K+VE + IG VI+G+V 
Sbjct: 254 KKVDLGIKQ---------------LDEDPWG------------KFVEQYQIGDVIQGEVT 286

Query: 759 ESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 812
               FG  V   +      H     + +H       V+ G+ ++  ILD+  AER + L 
Sbjct: 287 NVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPADFVKKGAFLECKILDMNAAERKLTLG 346

Query: 813 LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 872
           LK V               K+       KD  V   V   V+ + +N+ V  LP     I
Sbjct: 347 LKQV---------------KENPWDTVEKDFPVKSAVKCKVKRIIKNFAVFELPNGLEGI 391

Query: 873 GYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 931
              S  D+       K ++  G+     +M++       +L       S   T  S    
Sbjct: 392 CDISDFDWRNNIVNMKDYVKEGEEANMVIMSIDRDKQRIKL-------SYKHTKDSPWRL 444

Query: 932 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 991
            + ++  GS+V   +  I      +       G +HI++V   K + +E++    K+G+T
Sbjct: 445 FEKAHPQGSIVDGTVKAIVDSGAIIALEDDLEGYMHISQVEIPKGSTLEDV---LKVGET 501



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 135/298 (45%), Gaps = 45/298 (15%)

Query: 1125 NDNMQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
            N  ++TF++   E DI+ G++  I     G  V+I P   G +    +    V +P S  
Sbjct: 179  NAGIETFLNNLQENDIINGKVKNIEKF--GAFVEITPGFDGFLAIPNMSWDKVVNPKSII 236

Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
             +G+        E  F   KVL I +  +    V+L ++                D D  
Sbjct: 237  SKGE--------ERMF---KVLHIDKENK---KVDLGIKQ--------------LDEDPW 268

Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPI 1300
            GK +E+ +      ++QG V NV   G F+ ++  ++  V +S+LS + +V +P      
Sbjct: 269  GKFVEQYQ---IGDVIQGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPADFVKK 325

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESYGL 1359
            G  +  ++L +    +++ + LK          E     +  V   V  ++KR+ +++ +
Sbjct: 326  GAFLECKILDMNAAERKLTLGLKQVKENPWDTVE----KDFPVKSAVKCKVKRIIKNFAV 381

Query: 1360 FITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            F  + N  L G+C +S+    +++ N++   + GE+  + I+ +D++K+RI L  K +
Sbjct: 382  F-ELPN-GLEGICDISDFDWRNNIVNMKDYVKEGEEANMVIMSIDRDKQRIKLSYKHT 437



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 140/353 (39%), Gaps = 51/353 (14%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +VKGKV+  D     + F    +        SEF+     K+  +G E+   V G   
Sbjct: 29  GKIVKGKVVQFDDTDVFIDFDSKSEGKI---KRSEFD-----KEPIIGEEIEAIVSGEDD 80

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
           K   +  K  + K K   L   A   +  +T G + ++ K G  V    G Q F P S++
Sbjct: 81  KGYVILSKSEIDKRKSQELIDNAVKNNTSVT-GVVKEVVKGGFKVSIM-GHQAFCPFSQI 138

Query: 494 GLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 549
            L  G + S   ++G+  + R++      +  SRR+ L         +  + ++   +++
Sbjct: 139 DLARGIKESD--YIGKEYEFRVIKKNGRDVVVSRRVLLEEAQNAGIETFLNNLQENDIIN 196

Query: 550 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLVLDNE 608
           G V  +      V  I  G+  G +   +++   +     KS+I  G E   ++L +D E
Sbjct: 197 GKVKNIEKFGAFVE-ITPGFD-GFLAIPNMS--WDKVVNPKSIISKGEERMFKVLHIDKE 252

Query: 609 SSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
           +  + L  K        QL  D             V+ G V N+ + G FV+    + G 
Sbjct: 253 NKKVDLGIK--------QLDEDPWGKFVEQYQIGDVIQGEVTNVKKFGAFVKVADGIEGL 304

Query: 664 APRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 707
              S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 305 VHVS--------DLSWNSHVNNPADFVKKGAFLECKILDMNAAERKLTLGLKQ 349



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 138/332 (41%), Gaps = 74/332 (22%)

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGG 1151
            VL I+KE K + L ++   +           D    F+ +   GD++ G ++ +     G
Sbjct: 246  VLHIDKENKKVDLGIKQLDE-----------DPWGKFVEQYQIGDVIQGEVTNVKKF--G 292

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
              V++   + G VH ++L           ++    +P     +G F++CK+L+++   R 
Sbjct: 293  AFVKVADGIEGLVHVSDL----------SWNSHVNNPADFVKKGAFLECKILDMNAAER- 341

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
                +L+L     G+            + P   +EK  D      V+  VK +       
Sbjct: 342  ----KLTL-----GLKQVK--------ENPWDTVEK--DFPVKSAVKCKVKRIIKNFAVF 382

Query: 1272 MLSRKLDAKVLLS---------NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
             L   L+    +S         N+ D YV+  E+   +       ++S++   +R++++ 
Sbjct: 383  ELPNGLEGICDISDFDWRNNIVNMKD-YVKEGEEANMV-------IMSIDRDKQRIKLSY 434

Query: 1323 K-TSDS--RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1379
            K T DS  R   ++          G IV G +K +   G  I +E+ +L G  H+S++  
Sbjct: 435  KHTKDSPWRLFEKAHPQ-------GSIVDGTVKAIVDSGAIIALED-DLEGYMHISQVEI 486

Query: 1380 DHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411
                 +E + + GE     + +V+K KRRISL
Sbjct: 487  PKGSTLEDVLKVGETYPFVVREVNKSKRRISL 518


>gi|402815226|ref|ZP_10864819.1| putative 30S ribosomal protein S1 [Paenibacillus alvei DSM 29]
 gi|402507597|gb|EJW18119.1| putative 30S ribosomal protein S1 [Paenibacillus alvei DSM 29]
          Length = 404

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 175/389 (44%), Gaps = 70/389 (17%)

Query: 1039 GQRVTGYVYKVDNEWALLTIS---------RHLKAQLFILDSAYEPSELQEFQRRFHIGK 1089
            G  V G + K+D+  A+++I          R L A    +D+A +  E         +G+
Sbjct: 28   GDTVKGTIVKIDDNQAVVSIGYKYDGIIPVRELTA--VSVDNAADVVE---------VGQ 76

Query: 1090 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILS 1147
             V   V+SI+ EK+  RLVL       S + VD     D+MQ      D+    ++ ++ 
Sbjct: 77   EVECKVVSIDDEKE--RLVL-------SKRQVDSEQAWDDMQKHFEAQDVFEVTVADVVK 127

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            G  G+V  +G   +               P S  +    +  S Y +G+ ++ KV EI R
Sbjct: 128  G--GVVADVGVRAF--------------IPASMVERHFVEDFSDY-KGRTLRVKVKEIDR 170

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                     LS +  L+     N              +  +E L+    ++G V+ +T  
Sbjct: 171  ENNKLI---LSQKDVLEAEFEANK-------------IRVMEGLTEGQELEGTVQRLTQF 214

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S L+  +VE P      G+ V  +VL V+P + ++ +++K +  
Sbjct: 215  GAFVDVG-GVDGLVHVSELAWNHVEKPSDVVSEGQKVKVKVLKVDPANGKISLSIKATQP 273

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                Q+     SN+  GDI+ G++KR+  +G F+ +    + GL H+S+++  HV     
Sbjct: 274  GPWEQAS----SNIKTGDILTGEVKRLVDFGAFVEVA-PGVEGLVHISQIAHRHVATPYE 328

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + + G+ V+VK+L     ++R+SL +K +
Sbjct: 329  VLKQGQTVQVKVLDFSPAEKRVSLSIKET 357



 Score = 48.5 bits (114), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 1327 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
            + TASQ  + N+ +L  GD V G I +++     ++I      G+  V EL+   VDN  
Sbjct: 11   AETASQEALENIVSLKKGDTVKGTIVKIDDNQAVVSI-GYKYDGIIPVRELTAVSVDNAA 69

Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
             +   G++V+ K++ +D EK R+ L  +    +   D++Q
Sbjct: 70   DVVEVGQEVECKVVSIDDEKERLVLSKRQVDSEQAWDDMQ 109


>gi|295839505|ref|ZP_06826438.1| ribosomal protein S1 [Streptomyces sp. SPB74]
 gi|197699395|gb|EDY46328.1| ribosomal protein S1 [Streptomyces sp. SPB74]
          Length = 504

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|294628772|ref|ZP_06707332.1| ribosomal protein S1 [Streptomyces sp. e14]
 gi|292832105|gb|EFF90454.1| ribosomal protein S1 [Streptomyces sp. e14]
          Length = 496

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|332982232|ref|YP_004463673.1| hydroxymethylbutenyl pyrophosphate reductase [Mahella australiensis
            50-1 BON]
 gi|332699910|gb|AEE96851.1| hydroxymethylbutenyl pyrophosphate reductase [Mahella australiensis
            50-1 BON]
          Length = 718

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 113/211 (53%), Gaps = 22/211 (10%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
            + G VKNVT  G F+ +   +D  + + +LS G ++ P +    G  V   VLS +  +K
Sbjct: 516  ITGKVKNVTDFGAFVDIG-GVDGLIHIGDLSWGRIKHPSEVVKPGDTVDVIVLSADKENK 574

Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
            ++ + LK    +   Q     +    VGDIV G++  + S+G F+ +E   L GL H+S+
Sbjct: 575  KLSLGLK----QLQPQPWDYAMDKYKVGDIVRGKVVSITSFGAFVELE-PGLEGLVHISQ 629

Query: 1377 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            ++   ++ +E + + G++V+VKI+ V  E+ RISL +K +  + D+DN   +SEE+  +A
Sbjct: 630  VANKRINKVEDVLKVGDEVQVKIMDVRPEEHRISLSIKEA--QGDSDN---NSEEKWSKA 684

Query: 1437 IEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1467
                   +R     ++SV+ QD      DGG
Sbjct: 685  -----KADREEKNHSTSVSHQD------DGG 704



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 144/361 (39%), Gaps = 39/361 (10%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V GKV +V     IV   G    + P   M   E V P + F +  ++  +V     
Sbjct: 338 GQMVSGKVASVSDSEIIVSLGGKQDGVIPREEMGLDEGVSPSEVFHIDDDIEAQV----- 392

Query: 434 KRITVTHKKTLVKSKLAIL--SSYAEATDRLITHGWITKIEKH---GCFVRFYNGVQGFA 488
           K+     +  L+ S+  +L   ++A   D   T   IT + K    G  +   NG+  F 
Sbjct: 393 KKTARNEEDNLILSRKPLLLRKAWAAIEDAYNTGNNITGVVKEVIKGGILLDVNGIDVFV 452

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL------V 542
           P S +  D   +  ++  VG+ ++ +I+   P  RR   S      +            +
Sbjct: 453 PASHVS-DRYVKDLNVL-VGKEMEVKIIEITPKRRRAVGSHKAVIEQEKWQKEEEAWANI 510

Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 598
           + G  ++G V  VT     V +   G   G I   H+ D     ++H +    V+KPG  
Sbjct: 511 REGLRITGKVKNVTDFGAFVDI---GGVDGLI---HIGDLSWGRIKHPS---EVVKPGDT 561

Query: 599 FDQL-LVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFVR 655
            D + L  D E+  L L  K       Q  P D +        +V G V +I   G FV 
Sbjct: 562 VDVIVLSADKENKKLSLGLK-----QLQPQPWDYAMDKYKVGDIVRGKVVSITSFGAFVE 616

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 715
               L G    S+  + +   +     VG  V+  I+DV  E  RI+LS+K++   S + 
Sbjct: 617 LEPGLEGLVHISQVANKRINKVEDVLKVGDEVQVKIMDVRPEEHRISLSIKEAQGDSDNN 676

Query: 716 S 716
           S
Sbjct: 677 S 677



 Score = 40.8 bits (94), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 372 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
           K G +V+GKV+++ SFGA V+   G++ L  +  ++   I K     KVG E+  +++ V
Sbjct: 596 KVGDIVRGKVVSITSFGAFVELEPGLEGLVHISQVANKRINKVEDVLKVGDEVQVKIMDV 655

Query: 432 KSK--RITVTHKKT 443
           + +  RI+++ K+ 
Sbjct: 656 RPEEHRISLSIKEA 669


>gi|148543994|ref|YP_001271364.1| 30S ribosomal protein S1 [Lactobacillus reuteri DSM 20016]
 gi|184153388|ref|YP_001841729.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
 gi|194467922|ref|ZP_03073908.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227364907|ref|ZP_03848952.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
 gi|227543421|ref|ZP_03973470.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
 gi|325682468|ref|ZP_08161985.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
 gi|338204370|ref|YP_004650515.1| 30S ribosomal protein S1 [Lactobacillus reuteri SD2112]
 gi|148531028|gb|ABQ83027.1| SSU ribosomal protein S1P [Lactobacillus reuteri DSM 20016]
 gi|183224732|dbj|BAG25249.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
 gi|194452775|gb|EDX41673.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227070054|gb|EEI08432.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
 gi|227186600|gb|EEI66671.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
 gi|324978307|gb|EGC15257.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
 gi|336449610|gb|AEI58225.1| 30S ribosomal protein S1 [Lactobacillus reuteri SD2112]
          Length = 416

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 91/166 (54%), Gaps = 6/166 (3%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            +L P  +V+G V  +T+ G FI L   +D  V +S +S  +V+ P      G+ V  +VL
Sbjct: 198  ELQPGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKVL 256

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            SV+P  +R+ +++K +        E        V  ++ G +KR+ S+G F+ +    + 
Sbjct: 257  SVDPERERISLSIKQTLPGPWDDIE----EKAPVDSVLTGTVKRLTSFGAFVEV-FPGVE 311

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            GL H+S++S  H+     + + G++V+VK++ VD E +R+ L MK+
Sbjct: 312  GLVHISQISHKHIATPADVLKPGQEVQVKVINVDPEHQRLGLSMKA 357



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 1281 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1340
            V  S ++D YVE    +F  G+ +  +++ +EP   R+ ++ K        ++     + 
Sbjct: 141  VPASMITDHYVEDL-NQFK-GQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAE 198

Query: 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1400
            L  GD+V G++ R+ ++G FI +   +  GL HVSE+S DHVD    +  AG+ VKVK+L
Sbjct: 199  LQPGDVVEGKVARMTNFGAFIDLGGVD--GLVHVSEISYDHVDKPSDVLTAGQDVKVKVL 256

Query: 1401 KVDKEKRRISLGMKSS 1416
             VD E+ RISL +K +
Sbjct: 257  SVDPERERISLSIKQT 272



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           ++++PG VV+GKV  + +FGA +   GGV  L  +  +S   + KP      G ++  +V
Sbjct: 197 AELQPGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKV 255

Query: 429 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V  + +RI+++ K+TL      I        D ++T G + ++   G FV  + GV+G
Sbjct: 256 LSVDPERERISLSIKQTLPGPWDDI--EEKAPVDSVLT-GTVKRLTSFGAFVEVFPGVEG 312

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               S++       P+ +   GQ V+ ++++  P  +R+ LS 
Sbjct: 313 LVHISQISHKHIATPADVLKPGQEVQVKVINVDPEHQRLGLSM 355



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 137/350 (39%), Gaps = 55/350 (15%)

Query: 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 538
           GV+G  P  EL   P  + +    VG  +   ++S I  + + N S+++   R+      
Sbjct: 48  GVEGVVPAKELSTKPVEDINDAVKVGDELDLVVISKI-GNDKENGSYLLSHRRLEARKVW 106

Query: 539 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
           DD+ K    G  ++  V       +VV    +G+   ++ T+H  + L            
Sbjct: 107 DDIQKKFDEGEHITAKVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK-------- 158

Query: 596 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 653
           G E +  +V    S N L+ +   +I +  +  ++   + + P  VV G V  +   G F
Sbjct: 159 GQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAELQPGDVVEGKVARMTNFGAF 218

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
           +  LG + G    S+         S     GQ V+  +L V+ E  RI+LS+KQ+     
Sbjct: 219 ID-LGGVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKVLSVDPERERISLSIKQTLPGPW 277

Query: 714 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 773
           D         +EEK                     + SV+ G V     FG  V  E   
Sbjct: 278 DD--------IEEKAP-------------------VDSVLTGTVKRLTSFGAFV--EVFP 308

Query: 774 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 816
            V G      I+H  +A     ++ G  +Q  +++V    + + LS+K +
Sbjct: 309 GVEGLVHISQISHKHIATPADVLKPGQEVQVKVINVDPEHQRLGLSMKAL 358



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 149/351 (42%), Gaps = 30/351 (8%)

Query: 371 VKPGMVVKGKVIAVDS-FGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           VK G VVKG+V+A+D    AIV     GV+ + P   +S   +       KVG EL   V
Sbjct: 21  VKVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKVGDELDLVV 80

Query: 429 LGV-----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
           +       ++    ++H++   +     +    +  + +     +T+  K G  V    G
Sbjct: 81  ISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDEGEHITAK--VTQAVKGGLVVDA--G 136

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSED 539
           V+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS       +  + +E 
Sbjct: 137 VRGFVPASMI-TDHYVEDLNQFK-GQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEK 194

Query: 540 DLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 596
              +L  G +V G V  +T     + +   G   G +    ++ DH++  +    V+  G
Sbjct: 195 VFAELQPGDVVEGKVARMTNFGAFIDL---GGVDGLVHVSEISYDHVDKPS---DVLTAG 248

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 655
            +   ++L +D E   + LS K +L      +   A     +SV+ G V  +   G FV 
Sbjct: 249 QDVKVKVLSVDPERERISLSIKQTLPGPWDDIEEKAP---VDSVLTGTVKRLTSFGAFVE 305

Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
               + G    S+      A  +     GQ V+  +++V+ E  R+ LS+K
Sbjct: 306 VFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVINVDPEHQRLGLSMK 356



 Score = 45.1 bits (105), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 36/198 (18%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            +  GD+V G+++++ +   G  + +G  + G VH +E+    V  P         D L+ 
Sbjct: 199  LQPGDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEISYDHVDKP--------SDVLTA 247

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
               GQ VK KVL +         + LS++ +L                 PG   + IE+ 
Sbjct: 248  ---GQDVKVKVLSVDPERE---RISLSIKQTL-----------------PGP-WDDIEEK 283

Query: 1252 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            +P + ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +V++
Sbjct: 284  APVDSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVIN 343

Query: 1311 VEPLSKRVEVTLKTSDSR 1328
            V+P  +R+ +++K  + R
Sbjct: 344  VDPEHQRLGLSMKALEER 361


>gi|229084599|ref|ZP_04216869.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44]
 gi|228698749|gb|EEL51464.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44]
          Length = 382

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 174/388 (44%), Gaps = 54/388 (13%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1095
            + +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    V
Sbjct: 15   LQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SDV 61

Query: 1096 LSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGLV 1153
            + +++  +L  + L      +S + VD       +Q     G++    +  I++G  GLV
Sbjct: 62   VGLDQTLELKVIKLEDDDLVLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNG--GLV 119

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V +G   +      EL  +              +  + Y +G+ +  K++E+ R      
Sbjct: 120  VDLGVRGFIPASLVELHYV--------------EDFTDY-KGKTLAVKIVELDRE---KN 161

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
             V LS ++ ++    +   D              I  L    +V+G V+ +T  G F+ +
Sbjct: 162  RVILSHKAVVEQELESKKKD-------------AISSLKEGDVVEGTVQRLTDFGAFVNV 208

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  V +S +S   VE P      G+ V  +VLSV+  ++R+ +++K +        
Sbjct: 209  G-GVDGLVHISQISHDRVEQPADVLTQGQSVKVKVLSVDADTQRISLSIKAAQPGPWE-- 265

Query: 1334 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
              N  + +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G+
Sbjct: 266  --NVAAEVKPGDIREGLVKRIVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQ 322

Query: 1394 KVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +VKVK+L+V   ++RISL +K +  +N+
Sbjct: 323  EVKVKVLEVHAAEKRISLSIKEAIEENN 350



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 144/350 (41%), Gaps = 35/350 (10%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G VV G V  V+    +V        + P+  ++   I K      +   L  +V+ ++ 
Sbjct: 18  GDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVGLDQTLELKVIKLED 77

Query: 434 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493
             + ++  K  V ++ A +    + T   +    +  I   G  V    GV+GF P S +
Sbjct: 78  DDLVLS--KRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDL--GVRGFIPASLV 133

Query: 494 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----------VK 543
            L    E  + Y  G+ +  +I+       R+ LS       V E +L          +K
Sbjct: 134 ELHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKA----VVEQELESKKKDAISSLK 187

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +V G V  +T     V V   G   G +    ++ D +E       V+  G     +
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNV---GGVDGLVHISQISHDRVEQPA---DVLTQGQSVKVK 241

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
           +L +D ++  + LS     I +AQ  P +  A+ + P  +  G V  I+  G FV  L  
Sbjct: 242 VLSVDADTQRISLS-----IKAAQPGPWENVAAEVKPGDIREGLVKRIVTFGAFVEILPG 296

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
           + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++ 
Sbjct: 297 VEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAI 346



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 315 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 374
           V IS ++ + V +      +G  V+V++L         +  +KA+         ++VKPG
Sbjct: 215 VHISQISHDRVEQPADVLTQGQSVKVKVLSVDADTQRISLSIKAAQPGPWENVAAEVKPG 274

Query: 375 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS- 433
            + +G V  + +FGA V+   GV+ L  +  ++   +  P +  ++G E+  +VL V + 
Sbjct: 275 DIREGLVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAA 334

Query: 434 -KRITVTHKKTL 444
            KRI+++ K+ +
Sbjct: 335 EKRISLSIKEAI 346


>gi|260578011|ref|ZP_05845934.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
 gi|258603838|gb|EEW17092.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
          Length = 488

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 171/383 (44%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVE------VGDEIDAL 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++      + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEELKKNEEPVTGTVIEVVKG--GLIL 138

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG---------------QEIEAKIIELDKHRN---N 180

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSQLSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+
Sbjct: 282  WRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVGVGQ 340

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
               VK++ +D E+RRISL +K +
Sbjct: 341  DAMVKVIDIDLERRRISLSLKQA 363



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +  + +   G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEELKKNEEPVT--GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSQLSWKHIDHPS---EVVAVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+  +       +   VGQ     ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W+EG+
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGY 405


>gi|418474377|ref|ZP_13043878.1| 30S ribosomal protein S1 [Streptomyces coelicoflavus ZG0656]
 gi|371545016|gb|EHN73675.1| 30S ribosomal protein S1 [Streptomyces coelicoflavus ZG0656]
          Length = 504

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|310658769|ref|YP_003936490.1| 30S ribosomal protein S1 [[Clostridium] sticklandii]
 gi|308825547|emb|CBH21585.1| 30S ribosomal protein S1 [[Clostridium] sticklandii]
          Length = 358

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 95/168 (56%), Gaps = 6/168 (3%)

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E +E +    + +G +K++   G F+ +       V +S +S    E  ++++ IG+ + 
Sbjct: 181  EVVEKIKEGEVFEGVIKDIKDYGIFVDIGG-FTGLVHISEISWDRSEKIKEQYKIGEKIN 239

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
             +V+S +  S+R+ +++K+     AS      +SN  VGDIV G++K ++ YG FI +  
Sbjct: 240  VQVISFDQASERLSLSIKS----LASHPWDEFISNNKVGDIVTGEVKNIKEYGAFINLHP 295

Query: 1366 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
            T + G  H+S LS D + N   I + G+KV+VKI+ +++E ++I L +
Sbjct: 296  T-VDGFVHISNLSSDFIKNPNEILKVGQKVEVKIISIEQENKKIELSL 342



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 2/116 (1%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            +GK     ++ ++P  +R+  + K    +     +   +  +  G++  G IK ++ YG+
Sbjct: 145  LGKTFEVEIIDIDPKKRRLIFSRKNILLKQQEALKTEVVEKIKEGEVFEGVIKDIKDYGI 204

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            F+ I      GL H+SE+S D  + I+  Y+ GEK+ V+++  D+   R+SL +KS
Sbjct: 205  FVDI--GGFTGLVHISEISWDRSEKIKEQYKIGEKINVQVISFDQASERLSLSIKS 258



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 6/172 (3%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
           +K G V +G +  +  +G  V   GG   L  +  +S     K  +++K+G ++  +V+ 
Sbjct: 186 IKEGEVFEGVIKDIKDYGIFVDI-GGFTGLVHISEISWDRSEKIKEQYKIGEKINVQVIS 244

Query: 431 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
               S+R++++ K +L         S  +  D  I  G +  I+++G F+  +  V GF 
Sbjct: 245 FDQASERLSLSIK-SLASHPWDEFISNNKVGD--IVTGEVKNIKEYGAFINLHPTVDGFV 301

Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
             S L  D    P+ +  VGQ V+ +I+S    +++I LS +++   V+E++
Sbjct: 302 HISNLSSDFIKNPNEILKVGQKVEVKIISIEQENKKIELSLILEDKEVAEEE 353



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 46/77 (59%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            IV G VKN+   G FI L   +D  V +SNLS  ++++P +   +G+ V  +++S+E  +
Sbjct: 276  IVTGEVKNIKEYGAFINLHPTVDGFVHISNLSSDFIKNPNEILKVGQKVEVKIISIEQEN 335

Query: 1316 KRVEVTLKTSDSRTASQ 1332
            K++E++L   D   A +
Sbjct: 336  KKIELSLILEDKEVAEE 352



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 120/282 (42%), Gaps = 41/282 (14%)

Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 599
           D VK+G ++   V  V  NA  +  + K   +G +P  H+        V+KS +   +E 
Sbjct: 94  DEVKVGDVLQ--VKAVEFNAKGLICVYKTALRGFMPLSHIELKFIGEDVLKSYLGKTFEV 151

Query: 600 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLG 658
            +++ +D +   L+ S K  L+   + L ++    I    V  G + +I + G FV  +G
Sbjct: 152 -EIIDIDPKKRRLIFSRKNILLKQQEALKTEVVEKIKEGEVFEGVIKDIKDYGIFVD-IG 209

Query: 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 718
             TG    S+    +   + + Y +G+ +   ++  +  + R++LS+K      + AS  
Sbjct: 210 GFTGLVHISEISWDRSEKIKEQYKIGEKINVQVISFDQASERLSLSIK------SLASHP 263

Query: 719 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 778
            + F+   K                     +G ++ G+V    ++G  ++   H  V GF
Sbjct: 264 WDEFISNNK---------------------VGDIVTGEVKNIKEYGAFINL--HPTVDGF 300

Query: 779 ITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSL 813
           +    L+   +++       G  ++  I+ + +  + ++LSL
Sbjct: 301 VHISNLSSDFIKNPNEILKVGQKVEVKIISIEQENKKIELSL 342



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           +VK G V++ K +  ++ G I  +   ++   PL H+    I +   K  +G      ++
Sbjct: 95  EVKVGDVLQVKAVEFNAKGLICVYKTALRGFMPLSHIELKFIGEDVLKSYLGKTFEVEII 154

Query: 430 GV--KSKRITVTHKKTLVKSKLAILSSYAEAT-DRLITHGWITKIEKHGCFVRFYNGVQG 486
            +  K +R+  + K  L+K + A+ +   E   +  +  G I  I+ +G FV    G  G
Sbjct: 155 DIDPKKRRLIFSRKNILLKQQEALKTEVVEKIKEGEVFEGVIKDIKDYGIFVDI-GGFTG 213

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV---K 543
               SE+  D   +    Y +G+ +  +++S   AS R++LS     +    D+ +   K
Sbjct: 214 LVHISEISWDRSEKIKEQYKIGEKINVQVISFDQASERLSLSIKSLASH-PWDEFISNNK 272

Query: 544 LGSLVSGVV 552
           +G +V+G V
Sbjct: 273 VGDIVTGEV 281



 Score = 45.1 bits (105), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 65/338 (19%), Positives = 142/338 (42%), Gaps = 26/338 (7%)

Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSI 162
           + V +G ++   V   +D  + +     +  G LP++ + ++  I V   + +Q  V  I
Sbjct: 17  QEVYKGSIVKGRVMIEKDDSFYIDLNYKT-DGILPKDQVIDSETIKVGDEIEVQ--VVKI 73

Query: 163 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 222
           D+    + LS       K           D +  G ++  +       G++  + T   G
Sbjct: 74  DKNTGDILLSKKRVDEFKV---------WDEVKVGDVLQVKAVEFNAKGLICVYKTALRG 124

Query: 223 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP-----P 277
            + + H++  F   +    Y   K     I+ +DP  R +  +    LL  +        
Sbjct: 125 FMPLSHIELKFIGEDVLKSY-LGKTFEVEIIDIDPKKRRLIFSRKNILLKQQEALKTEVV 183

Query: 278 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 337
             +K G++++   V++  +  G+ +DI          V IS+++ +   K++++YK G  
Sbjct: 184 EKIKEGEVFEG--VIKDIKDYGIFVDIGGFT----GLVHISEISWDRSEKIKEQYKIGEK 237

Query: 338 VRVRILGFRHL-EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 396
           + V+++ F    E L+  I   ++     F  S+ K G +V G+V  +  +GA +     
Sbjct: 238 INVQVISFDQASERLSLSIKSLASHPWDEFI-SNNKVGDIVTGEVKNIKEYGAFINLHPT 296

Query: 397 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 434
           V     + ++S   I  P +  KVG ++  +++ ++ +
Sbjct: 297 VDGFVHISNLSSDFIKNPNEILKVGQKVEVKIISIEQE 334


>gi|227501804|ref|ZP_03931853.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
 gi|306835982|ref|ZP_07468974.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
 gi|227077829|gb|EEI15792.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
 gi|304568148|gb|EFM43721.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
          Length = 487

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +     P E+ E      +G  V   
Sbjct: 34   GDIVGGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVE------VGDEVDAL 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELQAKEEPVTGTVIEVVKG--GLIL 138

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +   +P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG---------------QELEAKIIELDKQRN---N 180

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAYLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 282  WRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVTVGQ 340

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
            +V VK++ +D E+RRISL +K +
Sbjct: 341  EVMVKVIDIDLERRRISLSVKQA 363



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 7/176 (3%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 426 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 539
           ++G    SEL       P  +  VGQ V  +++      RRI+LS        SE+
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLSVKQADEDYSEE 370



 Score = 47.8 bits (112), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 164/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVGGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEVDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEEL-QAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAYLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+          +   VGQ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLSVKQA-----DEDYSE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDPDTNEWKEGF 405


>gi|206970547|ref|ZP_03231499.1| ribosomal protein S1 [Bacillus cereus AH1134]
 gi|206734183|gb|EDZ51353.1| ribosomal protein S1 [Bacillus cereus AH1134]
          Length = 382

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 180/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGCVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 43.9 bits (102), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 127/294 (43%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|455646857|gb|EMF25877.1| 30S ribosomal protein S1 [Streptomyces gancidicus BKS 13-15]
          Length = 497

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|302035807|ref|YP_003796129.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii]
 gi|300603871|emb|CBK40203.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii]
          Length = 571

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 108/199 (54%), Gaps = 8/199 (4%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            ++G VK++T  G F+ L   +D  + +S++S   +++ P + F  G+ V   V+ ++   
Sbjct: 375  IEGKVKSLTDFGAFVGLEEGIDGLIHISDMSWTKHIKHPSELFKKGQKVDAVVIRIDKEK 434

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            +R+ +  K   SR   + +I N     VGD + G++ ++  +GLFI ++  ++ GL H+S
Sbjct: 435  ERLSLGYKQL-SRDPWEEQIPN--KYRVGDSITGKVSKIADFGLFIELDG-DVEGLIHIS 490

Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
            E+  D    +E  ++ G+ V  KI+KVD+++R+I+L ++      D+D  Q+     S  
Sbjct: 491  EVGLDANVRMEEKFKPGDDVTAKIIKVDRDERKIALSLRDHQM--DSDRRQVDEFHASQG 548

Query: 1436 AIEE-VGSYNRSSLLENSS 1453
             I++ +G   + S   N S
Sbjct: 549  GIDQTLGRAAKQSRKRNQS 567



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 7/167 (4%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            L    ++QG VKN+T  G FI L   +D  + ++++S G V  P + F +   V   VL 
Sbjct: 197  LKEGQLIQGTVKNITDYGAFIDLG-GIDGLLHITDMSWGRVGHPSELFQVSDKVEVTVLK 255

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
             +  + R+ + LK    + ++       +   VG  V G++  +  YG F+ +E   + G
Sbjct: 256  YDRETGRISLGLK----QKSADPWTGVAAKYPVGTRVRGRVVSLTDYGAFVELE-PGVEG 310

Query: 1371 LCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            L HVSE+S  H V +   +   G++V+  +L +D   R+ISLGMK +
Sbjct: 311  LVHVSEMSWTHEVRHPSRVVSVGDQVEAAVLNIDPGSRKISLGMKQT 357



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 2/115 (1%)

Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
            +GK    +++ +      V V+ +     T  +     LS L  G ++ G +K +  YG 
Sbjct: 156  VGKTFPLKIIKINHRRGNVVVSRRVLLEETRDRRRQTTLSTLKEGQLIQGTVKNITDYGA 215

Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            FI +   +  GL H++++S   V +   +++  +KV+V +LK D+E  RISLG+K
Sbjct: 216  FIDLGGID--GLLHITDMSWGRVGHPSELFQVSDKVEVTVLKYDRETGRISLGLK 268



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 101/487 (20%), Positives = 184/487 (37%), Gaps = 79/487 (16%)

Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL-V 425
           T  + + G + +G V+A+     +V      + + P    S  E+ +     KVG  L V
Sbjct: 24  TFRNFEEGTITEGMVVAIGKDKVVVDIGYKSEGMIPADQFSHEELAQ----LKVGDRLQV 79

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
           +      +    V  K+   K K+          ++ I    I++I K G  V    GV+
Sbjct: 80  YLEECEDADGNLVLSKEKADKMKIWEELETLHKEEKSIEGKIISRI-KGGMMVDI--GVK 136

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 539
            F P S++ L P  +   +  VG+    +I+       ++  SRR+ L       R +  
Sbjct: 137 AFLPGSQIDLHPVRDLDGL--VGKTFPLKIIKINHRRGNVVVSRRVLLEETRDRRRQTTL 194

Query: 540 DLVKLGSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPTE--HLADHLEHATV 588
             +K G L+ G V  +T     +         ++    + +   P+E   ++D +E  TV
Sbjct: 195 STLKEGQLIQGTVKNITDYGAFIDLGGIDGLLHITDMSWGRVGHPSELFQVSDKVE-VTV 253

Query: 589 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 648
           +K               D E+  + L  K     SA      A+     + V G V ++ 
Sbjct: 254 LK--------------YDRETGRISLGLKQ---KSADPWTGVAAKYPVGTRVRGRVVSLT 296

Query: 649 ETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
           + G FV     + G    S+ +   +    S+   VG  V + +L+++  + +I+L +KQ
Sbjct: 297 DYGAFVELEPGVEGLVHVSEMSWTHEVRHPSRVVSVGDQVEAAVLNIDPGSRKISLGMKQ 356

Query: 708 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 767
           +  +  D        ++E K                   +  G+ IEGKV    DFG  V
Sbjct: 357 TAPNPWD--------MIEAK-------------------YPAGTRIEGKVKSLTDFGAFV 389

Query: 768 SFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 821
             EE      H     +  H +      + G  + A ++ + K +  + L  K +  D +
Sbjct: 390 GLEEGIDGLIHISDMSWTKHIKHPSELFKKGQKVDAVVIRIDKEKERLSLGYKQLSRDPW 449

Query: 822 REANSNR 828
            E   N+
Sbjct: 450 EEQIPNK 456



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 114/261 (43%), Gaps = 15/261 (5%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVK 432
           G  V+G+V+++  +GA V+   GV+ L  +  MS   E+  P +   VG ++   VL + 
Sbjct: 285 GTRVRGRVVSLTDYGAFVELEPGVEGLVHVSEMSWTHEVRHPSRVVSVGDQVEAAVLNID 344

Query: 433 --SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
             S++I++  K+T       I + Y   T      G +  +   G FV    G+ G    
Sbjct: 345 PGSRKISLGMKQTAPNPWDMIEAKYPAGTR---IEGKVKSLTDFGAFVGLEEGIDGLIHI 401

Query: 491 SELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---VKLGS 546
           S++      + PS ++  GQ V   ++       R++L +        E+ +    ++G 
Sbjct: 402 SDMSWTKHIKHPSELFKKGQKVDAVVIRIDKEKERLSLGYKQLSRDPWEEQIPNKYRVGD 461

Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVL 605
            ++G V  +      +++   G  +G I    +   L+    M+   KPG +   +++ +
Sbjct: 462 SITGKVSKIADFG--LFIELDGDVEGLIHISEVG--LDANVRMEEKFKPGDDVTAKIIKV 517

Query: 606 DNESSNLLLSAKYSLINSAQQ 626
           D +   + LS +   ++S ++
Sbjct: 518 DRDERKIALSLRDHQMDSDRR 538


>gi|281413894|ref|ZP_06245636.1| 30S ribosomal protein S1 [Micrococcus luteus NCTC 2665]
          Length = 413

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 151/327 (46%), Gaps = 48/327 (14%)

Query: 1092 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1151
            T   L + KE K  RL+L   +        DI     +    E  +V G + +++ G  G
Sbjct: 12   TVEALVLTKEDKEGRLILSKKRAQYERAWGDI-----EKIKEEDGVVEGTVIEVVKG--G 64

Query: 1152 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211
            L++ IG   +      E++ +    P  G               Q ++ K++E+ +    
Sbjct: 65   LILDIGLRGFLPASLVEMRRVRDLAPYIG---------------QKLEAKIIELDKNRN- 108

Query: 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1271
              +V LS R+ L+   S   S+              +  L    +  G V ++ + G F+
Sbjct: 109  --NVVLSRRAWLEQTQSEVRSNF-------------LHKLEKGQVRNGTVSSIVNFGAFV 153

Query: 1272 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331
             L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK      A+
Sbjct: 154  DLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLK------AT 206

Query: 1332 QSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
            Q +   L +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+  H+D  E + 
Sbjct: 207  QEDPWQLFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELASRHIDTAEQVV 265

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKSS 1416
               +++ VK++ +D E+RRISL +K +
Sbjct: 266  SVNDELFVKVIDIDLERRRISLSLKQA 292



 Score = 48.5 bits (114), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 3/164 (1%)

Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
           F H  ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+ 
Sbjct: 129 FLHK-LEKGQVRNGTVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 186

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
             VL V   R  V+      +     L +   A  +++  G +TK+   G FVR  +G++
Sbjct: 187 VEVLEVDMDRERVSLSLKATQEDPWQLFARTHALGQVVP-GKVTKLVPFGAFVRVEDGIE 245

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
           G    SEL          +  V   +  +++      RRI+LS 
Sbjct: 246 GLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSL 289



 Score = 42.4 bits (98), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 135/328 (41%), Gaps = 50/328 (15%)

Query: 499 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVV 555
            +P  +  VG  V+  +++      R+ LS        +  D+ K+     +V G V  V
Sbjct: 1   MDPDEVVAVGDTVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKEEDGVVEGTVIEV 60

Query: 556 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 614
               +++ +  +G+    +P    A  +E   V       G + + +++ LD   +N++L
Sbjct: 61  VKGGLILDIGLRGF----LP----ASLVEMRRVRDLAPYIGQKLEAKIIELDKNRNNVVL 112

Query: 615 SAKYSLINSAQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 673
           S +  L  +  ++ S+  H +    V +G V +I+  G FV  LG + G    S+     
Sbjct: 113 SRRAWLEQTQSEVRSNFLHKLEKGQVRNGTVSSIVNFGAFVD-LGGVDGLVHVSELSWKH 171

Query: 674 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS 733
               S+   VGQ V   +L+V+ +  R++LSLK +                +E    L +
Sbjct: 172 IDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLKAT----------------QEDPWQLFA 215

Query: 734 SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGS 793
             H            +G V+ GKV +   FG  V  E+   + G +   +LA   +++  
Sbjct: 216 RTH-----------ALGQVVPGKVTKLVPFGAFVRVEDG--IEGLVHISELASRHIDTAE 262

Query: 794 VIQAA-------ILDVAKAERLVDLSLK 814
            + +        ++D+    R + LSLK
Sbjct: 263 QVVSVNDELFVKVIDIDLERRRISLSLK 290


>gi|229155163|ref|ZP_04283275.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
 gi|228628290|gb|EEK85005.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
          Length = 382

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 180/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEIGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 45.1 bits (105), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   IG+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380



 Score = 41.2 bits (95), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 29/356 (8%)

Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
             +V+ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKVIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 538
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 539 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 596
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 653
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
           V  L  + G    S+  +    + ++   +GQ V+  +L+V+    RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKVKVLEVHVAEKRISLSIKEAL 346


>gi|386839556|ref|YP_006244614.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus subsp.
            jinggangensis 5008]
 gi|374099857|gb|AEY88741.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus subsp.
            jinggangensis 5008]
 gi|451792849|gb|AGF62898.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus subsp.
            jinggangensis TL01]
          Length = 496

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 187/416 (44%), Gaps = 66/416 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 375



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|329940857|ref|ZP_08290137.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045]
 gi|329300151|gb|EGG44049.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045]
          Length = 499

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|148270479|ref|YP_001244939.1| RNA-binding S1 domain-containing protein [Thermotoga petrophila
           RKU-1]
 gi|147736023|gb|ABQ47363.1| RNA binding S1 domain protein [Thermotoga petrophila RKU-1]
          Length = 543

 Score = 80.5 bits (197), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 112/531 (21%), Positives = 222/531 (41%), Gaps = 57/531 (10%)

Query: 320 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 379
           V E E+ K   +YK G  + ++IL   + E       +    + L     D +    VK 
Sbjct: 49  VPENELIKSLDEYKVGENLTLQILNLNYEERSILSERRPVLRKTLEELRKDYEEKKPVKA 108

Query: 380 KVIAVDSFGAIVQFPGGVKALCPLPH--MSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 437
           ++++    G  V   G V A  P  H  +   + + P K+ +V   ++  ++  K     
Sbjct: 109 RIVSQTKGGYNVLLKGVVSAFLPGSHSLLRRNDPI-PEKEIEV---IILEMVQTKRGSRI 164

Query: 438 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 497
           V  ++ L   K+    S  +  D  I  G +  I   G  V    G++GF P+SEL  D 
Sbjct: 165 VVSRRALQDRKIEEFFSEKKVGD--IIEGTVKGISNAGVEVEISEGIRGFIPKSELSYDN 222

Query: 498 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSLVSGVVDVV 555
              P  +   GQ +  +I+      + + LS   +M        +   +G +V G  +V+
Sbjct: 223 RISPEDVVKPGQNITAKIIELDERKKNVILSLKRLMPDPWEKVKEKYPVGKVVGG--EVI 280

Query: 556 TPNAVVVYVIAKGYSKGTIPTEHL-----ADHLEHATVMKSVIKPGYEFDQLLVLDNESS 610
           + ++   +V  +   +G +P   +       +LE    +  ++K      +++ +D E+ 
Sbjct: 281 SIHSFGFFVRLEPGVEGLVPRSEVFWGNARKNLEEVVSVGDLVKV-----EVINVDKENR 335

Query: 611 NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 670
            L LS + +  +  + +       + N+VV G V  II+ G FV     + GF P S+  
Sbjct: 336 KLTLSYRKAKGDPWENI---EDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEIS 392

Query: 671 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 730
             +  +  +   +G+ V+  IL ++ E  +ITLS++++  +  + +              
Sbjct: 393 WKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIRRTQENPWERAL------------- 439

Query: 731 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 790
                    ELK        S++ G +    + GV+V  E++ DV GF+ ++ L  +  E
Sbjct: 440 --------KELK------PDSIVRGTIERIVNSGVIVKVEKY-DVEGFVPNNHLV-SEPE 483

Query: 791 SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK 841
           +G ++   +L +   E       + +  ++  E   N +  KK  ++E+S+
Sbjct: 484 TGKILNLVVLRIDPDEV---FGGRMILSEKRYEERKNIEEYKKMVEKESSQ 531



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 125/518 (24%), Positives = 212/518 (40%), Gaps = 69/518 (13%)

Query: 103 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRS 161
           E  + G ++T  V   ED G ++ FG  S  GF+P N L ++     V   L LQ  + +
Sbjct: 17  EEFRRGQIVTGVVIGKEDGGVVVDFGGKS-EGFVPENELIKSLDEYKVGENLTLQ--ILN 73

Query: 162 IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRV--QSILENGVMLSFLTY 219
           ++   + + LS     + K + +  K       V   +VS      ++L  GV+ +FL  
Sbjct: 74  LNYEERSI-LSERRPVLRKTLEELRKDYEEKKPVKARIVSQTKGGYNVLLKGVVSAFLP- 131

Query: 220 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-- 277
             G+  +    +  P           K++   IL +  T R   + ++   L +R     
Sbjct: 132 --GSHSLLRRNDPIP----------EKEIEVIILEMVQTKRGSRIVVSRRALQDRKIEEF 179

Query: 278 -SHVKVGDIYD------QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 330
            S  KVGDI +       +  V V+   G+   IP + +S    ++  DV          
Sbjct: 180 FSEKKVGDIIEGTVKGISNAGVEVEISEGIRGFIPKSELSYDNRISPEDVV--------- 230

Query: 331 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 390
             K G  +  +I+     +      LK    +           G VV G+VI++ SFG  
Sbjct: 231 --KPGQNITAKIIELDERKKNVILSLKRLMPDPWEKVKEKYPVGKVVGGEVISIHSFGFF 288

Query: 391 VQFPGGVKALCPLPHM-------SEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 441
           V+   GV+ L P   +       +  E+V  G   KV       V+ V  +++++T++++
Sbjct: 289 VRLEPGVEGLVPRSEVFWGNARKNLEEVVSVGDLVKV------EVINVDKENRKLTLSYR 342

Query: 442 KTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 497
           K       A    +    DR     +  G +T I K G FV    GV+GF P SE+    
Sbjct: 343 K-------AKGDPWENIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKR 395

Query: 498 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--VKLGSLVSGVVDVV 555
             EP  +  +G+ VK +I+     +R+I LS         E  L  +K  S+V G ++ +
Sbjct: 396 IDEPGEILKIGEKVKVKILKIDKENRKITLSIRRTQENPWERALKELKPDSIVRGTIERI 455

Query: 556 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI 593
             + V+V V  K   +G +P  HL    E   ++  V+
Sbjct: 456 VNSGVIVKV-EKYDVEGFVPNNHLVSEPETGKILNLVV 492



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 139/300 (46%), Gaps = 46/300 (15%)

Query: 1123 ISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
            + +  ++ F  E   GDI+ G +  I +   G+ V+I   + G +  +EL          
Sbjct: 171  LQDRKIEEFFSEKKVGDIIEGTVKGISNA--GVEVEISEGIRGFIPKSEL---------- 218

Query: 1180 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1239
             YD  +  P      GQ +  K++E+    +   +V LSL+             L  D  
Sbjct: 219  SYD-NRISPEDVVKPGQNITAKIIELDERKK---NVILSLKR------------LMPD-- 260

Query: 1240 TPGKHLEKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKE 1297
                  EK+++  P   +V G V ++ S G F+ L   ++  V  S +  G   ++ E+ 
Sbjct: 261  ----PWEKVKEKYPVGKVVGGEVISIHSFGFFVRLEPGVEGLVPRSEVFWGNARKNLEEV 316

Query: 1298 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVES 1356
              +G LV   V++V+  ++++     T   R A      N+ + + V ++V G++  +  
Sbjct: 317  VSVGDLVKVEVINVDKENRKL-----TLSYRKAKGDPWENIEDRYNVNNVVTGKVTGIIK 371

Query: 1357 YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
             G F+ +E   + G   VSE+S   +D    I + GEKVKVKILK+DKE R+I+L ++ +
Sbjct: 372  QGAFVELEE-GVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIRRT 430



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 1256 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            I++G VK +++ G  + +S  +   +  S LS     SPE     G+ +  +++ ++   
Sbjct: 188  IIEGTVKGISNAGVEVEISEGIRGFIPKSELSYDNRISPEDVVKPGQNITAKIIELDERK 247

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
            K V ++LK    R              VG +V G++  + S+G F+ +E   + GL   S
Sbjct: 248  KNVILSLK----RLMPDPWEKVKEKYPVGKVVGGEVISIHSFGFFVRLE-PGVEGLVPRS 302

Query: 1376 ELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
            E+   +   N+E +   G+ VKV+++ VDKE R+++L    SY K   D
Sbjct: 303  EVFWGNARKNLEEVVSVGDLVKVEVINVDKENRKLTL----SYRKAKGD 347


>gi|365860826|ref|ZP_09400618.1| 30S ribosomal protein S1 [Streptomyces sp. W007]
 gi|364009736|gb|EHM30684.1| 30S ribosomal protein S1 [Streptomyces sp. W007]
          Length = 506

 Score = 80.5 bits (197), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------LEAKIIELDKNRN---N 185

Query: 1215 VELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
            V LS R+ L+   S    + L+T              L    +  G V ++ + G F+ L
Sbjct: 186  VVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDL 231

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q 
Sbjct: 232  G-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ- 289

Query: 1334 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
                 +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  
Sbjct: 290  ----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVN 344

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            +++ VK++ +D E+RRISL +K +
Sbjct: 345  DEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|357414015|ref|YP_004925751.1| RNA binding S1 domain-containing protein [Streptomyces flavogriseus
            ATCC 33331]
 gi|320011384|gb|ADW06234.1| RNA binding S1 domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 503

 Score = 80.5 bits (197), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------LEAKIIELDKNRN---N 185

Query: 1215 VELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
            V LS R+ L+   S    + L+T              L    +  G V ++ + G F+ L
Sbjct: 186  VVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDL 231

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q 
Sbjct: 232  G-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ- 289

Query: 1334 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
                 +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  
Sbjct: 290  ----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVN 344

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            +++ VK++ +D E+RRISL +K +
Sbjct: 345  DEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|291450767|ref|ZP_06590157.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
 gi|359144624|ref|ZP_09178558.1| 30S ribosomal protein S1 [Streptomyces sp. S4]
 gi|421738888|ref|ZP_16177225.1| ribosomal protein S1 [Streptomyces sp. SM8]
 gi|291353716|gb|EFE80618.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
 gi|406692679|gb|EKC96363.1| ribosomal protein S1 [Streptomyces sp. SM8]
          Length = 504

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|300787975|ref|YP_003768266.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei U32]
 gi|384151397|ref|YP_005534213.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
 gi|399539858|ref|YP_006552520.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
 gi|299797489|gb|ADJ47864.1| small subunit ribosomal protein S1 [Amycolatopsis mediterranei U32]
 gi|340529551|gb|AEK44756.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
 gi|398320628|gb|AFO79575.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
          Length = 499

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 172/383 (44%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 43   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VTVGDEVEAL 96

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 97   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEPVKGTVIEVVKG--GLIL 147

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 148  DIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKNRN---N 189

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L+   + +G V ++ + G F+ L 
Sbjct: 190  VVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG 236

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q  
Sbjct: 237  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-- 293

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + +   
Sbjct: 294  ---FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVNG 349

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
             V VK++ +D E+RRISL +K +
Sbjct: 350  DVMVKVIDIDLERRRISLSLKQA 372



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 148/368 (40%), Gaps = 52/368 (14%)

Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
           D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++   
Sbjct: 42  DGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKE 101

Query: 520 PASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
               R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P 
Sbjct: 102 DKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP- 156

Query: 577 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 634
              A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +
Sbjct: 157 ---ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNAL 213

Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV
Sbjct: 214 AKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDV 272

Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 754
           + +  R++LSLK +        F + H                           IG ++ 
Sbjct: 273 DMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVP 305

Query: 755 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSVIQAAILDVAKAE 806
           GKV +   FG  V  EE   + G +   +LA   VE        +G V+   ++D+    
Sbjct: 306 GKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEIPEQVVQVNGDVM-VKVIDIDLER 362

Query: 807 RLVDLSLK 814
           R + LSLK
Sbjct: 363 RRISLSLK 370



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 150/358 (41%), Gaps = 32/358 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKED 102

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 717
            G    S+  +       +   V   V   ++D++ E  RI+LSLKQ+    T D  F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQANEGVTPDTEF 382


>gi|254384227|ref|ZP_04999571.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1]
 gi|194343116|gb|EDX24082.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1]
          Length = 503

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------LEAKIIELDKNRN---N 185

Query: 1215 VELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
            V LS R+ L+   S    + L+T              L    +  G V ++ + G F+ L
Sbjct: 186  VVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDL 231

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q 
Sbjct: 232  G-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ- 289

Query: 1334 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
                 +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  
Sbjct: 290  ----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVN 344

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            +++ VK++ +D E+RRISL +K +
Sbjct: 345  DEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|218234210|ref|YP_002366278.1| 30S ribosomal protein S1 [Bacillus cereus B4264]
 gi|228920308|ref|ZP_04083655.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|228957873|ref|ZP_04119613.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
            str. T13001]
 gi|229043342|ref|ZP_04191060.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
 gi|229069150|ref|ZP_04202441.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
 gi|229078780|ref|ZP_04211333.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
 gi|229109053|ref|ZP_04238653.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
 gi|229144196|ref|ZP_04272610.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
 gi|229149795|ref|ZP_04278024.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
 gi|229178005|ref|ZP_04305377.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
 gi|365162295|ref|ZP_09358425.1| ribosomal protein S1 [Bacillus sp. 7_6_55CFAA_CT2]
 gi|423414716|ref|ZP_17391836.1| ribosomal protein S1 [Bacillus cereus BAG3O-2]
 gi|423423673|ref|ZP_17400704.1| ribosomal protein S1 [Bacillus cereus BAG3X2-2]
 gi|423429502|ref|ZP_17406506.1| ribosomal protein S1 [Bacillus cereus BAG4O-1]
 gi|423435084|ref|ZP_17412065.1| ribosomal protein S1 [Bacillus cereus BAG4X12-1]
 gi|423579790|ref|ZP_17555901.1| ribosomal protein S1 [Bacillus cereus VD014]
 gi|423588020|ref|ZP_17564107.1| ribosomal protein S1 [Bacillus cereus VD045]
 gi|423629542|ref|ZP_17605290.1| ribosomal protein S1 [Bacillus cereus VD154]
 gi|423643358|ref|ZP_17618976.1| ribosomal protein S1 [Bacillus cereus VD166]
 gi|423654378|ref|ZP_17629677.1| ribosomal protein S1 [Bacillus cereus VD200]
 gi|218162167|gb|ACK62159.1| ribosomal protein S1 [Bacillus cereus B4264]
 gi|228605493|gb|EEK62942.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
 gi|228633659|gb|EEK90259.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
 gi|228639204|gb|EEK95620.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
 gi|228674331|gb|EEL29575.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
 gi|228704462|gb|EEL56895.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
 gi|228713902|gb|EEL65786.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
 gi|228725990|gb|EEL77229.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
 gi|228801789|gb|EEM48666.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
            str. T13001]
 gi|228839331|gb|EEM84625.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|363618608|gb|EHL69952.1| ribosomal protein S1 [Bacillus sp. 7_6_55CFAA_CT2]
 gi|401097636|gb|EJQ05658.1| ribosomal protein S1 [Bacillus cereus BAG3O-2]
 gi|401115363|gb|EJQ23216.1| ribosomal protein S1 [Bacillus cereus BAG3X2-2]
 gi|401121808|gb|EJQ29597.1| ribosomal protein S1 [Bacillus cereus BAG4O-1]
 gi|401125322|gb|EJQ33082.1| ribosomal protein S1 [Bacillus cereus BAG4X12-1]
 gi|401217245|gb|EJR23939.1| ribosomal protein S1 [Bacillus cereus VD014]
 gi|401227757|gb|EJR34286.1| ribosomal protein S1 [Bacillus cereus VD045]
 gi|401267409|gb|EJR73469.1| ribosomal protein S1 [Bacillus cereus VD154]
 gi|401275362|gb|EJR81329.1| ribosomal protein S1 [Bacillus cereus VD166]
 gi|401295889|gb|EJS01512.1| ribosomal protein S1 [Bacillus cereus VD200]
          Length = 382

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 43.9 bits (102), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|29832775|ref|NP_827409.1| 30S ribosomal protein S1 [Streptomyces avermitilis MA-4680]
 gi|29609895|dbj|BAC73944.1| putative ribosomal protein S1 [Streptomyces avermitilis MA-4680]
          Length = 501

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|161986623|ref|YP_250600.2| 30S ribosomal protein S1 [Corynebacterium jeikeium K411]
          Length = 488

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 171/383 (44%), Gaps = 58/383 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVE------VGDEIDAL 87

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
            VL+  KE K  RL+L   +        + +   ++      + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEELKKNEEPVTGTVIEVVKG--GLIL 138

Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1214
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG---------------QEIEAKIIELDKHRN---N 180

Query: 1215 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1334
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSQLSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1335 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1393
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+
Sbjct: 282  WRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVGVGQ 340

Query: 1394 KVKVKILKVDKEKRRISLGMKSS 1416
               VK++ +D E+RRISL +K +
Sbjct: 341  DAMVKVIDIDLERRRISLSLKQA 363



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVLTKED 93

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    +  + +   G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEELKKNEEPVT--GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSQLSWKHIDHPS---EVVAVGDEVTVE 259

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 659
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
           + G    S+  +       +   VGQ     ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 720 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
           E      K  M  S    G+ +          +W+EG+
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGY 405


>gi|383643400|ref|ZP_09955806.1| 30S ribosomal protein S1 [Streptomyces chartreusis NRRL 12338]
          Length = 498

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|30261593|ref|NP_843970.1| 30S ribosomal protein S1 [Bacillus anthracis str. Ames]
 gi|47526793|ref|YP_018142.1| 30S ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184425|ref|YP_027677.1| 30S ribosomal protein S1 [Bacillus anthracis str. Sterne]
 gi|49477253|ref|YP_035714.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar konkukian
            str. 97-27]
 gi|65318864|ref|ZP_00391823.1| COG0539: Ribosomal protein S1 [Bacillus anthracis str. A2012]
 gi|118477052|ref|YP_894203.1| 30S ribosomal protein S1 [Bacillus thuringiensis str. Al Hakam]
 gi|165869571|ref|ZP_02214230.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
 gi|167633256|ref|ZP_02391581.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
 gi|167639190|ref|ZP_02397463.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
 gi|170686252|ref|ZP_02877474.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
 gi|170706479|ref|ZP_02896939.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
 gi|177650520|ref|ZP_02933487.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
 gi|190568598|ref|ZP_03021503.1| ribosomal protein S1 [Bacillus anthracis str. Tsiankovskii-I]
 gi|196033526|ref|ZP_03100938.1| ribosomal protein S1 [Bacillus cereus W]
 gi|196046631|ref|ZP_03113855.1| ribosomal protein S1 [Bacillus cereus 03BB108]
 gi|218902709|ref|YP_002450543.1| 30S ribosomal protein S1 [Bacillus cereus AH820]
 gi|225863461|ref|YP_002748839.1| ribosomal protein S1 [Bacillus cereus 03BB102]
 gi|227815655|ref|YP_002815664.1| 30S ribosomal protein S1 [Bacillus anthracis str. CDC 684]
 gi|228914171|ref|ZP_04077789.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
            BGSC 4CC1]
 gi|228926628|ref|ZP_04089697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|228932883|ref|ZP_04095750.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228945197|ref|ZP_04107553.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
            BGSC 4AJ1]
 gi|229090559|ref|ZP_04221794.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
 gi|229121140|ref|ZP_04250377.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
 gi|229183792|ref|ZP_04311009.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
 gi|229604611|ref|YP_002866001.1| 30S ribosomal protein S1 [Bacillus anthracis str. A0248]
 gi|254683085|ref|ZP_05146946.1| 30S ribosomal protein S1 [Bacillus anthracis str. CNEVA-9066]
 gi|254733536|ref|ZP_05191257.1| 30S ribosomal protein S1 [Bacillus anthracis str. Western North
            America USA6153]
 gi|254740845|ref|ZP_05198533.1| 30S ribosomal protein S1 [Bacillus anthracis str. Kruger B]
 gi|254755083|ref|ZP_05207117.1| 30S ribosomal protein S1 [Bacillus anthracis str. Vollum]
 gi|254759620|ref|ZP_05211644.1| 30S ribosomal protein S1 [Bacillus anthracis str. Australia 94]
 gi|301053136|ref|YP_003791347.1| 30S ribosomal protein S1 [Bacillus cereus biovar anthracis str. CI]
 gi|376265440|ref|YP_005118152.1| 30S ribosomal protein S1 [Bacillus cereus F837/76]
 gi|386735301|ref|YP_006208482.1| 30S ribosomal protein S1 [Bacillus anthracis str. H9401]
 gi|421638607|ref|ZP_16079202.1| 30S ribosomal protein S1 [Bacillus anthracis str. BF1]
 gi|423552668|ref|ZP_17528995.1| ribosomal protein S1 [Bacillus cereus ISP3191]
 gi|30255447|gb|AAP25456.1| ribosomal protein S1 [Bacillus anthracis str. Ames]
 gi|47501941|gb|AAT30617.1| ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178352|gb|AAT53728.1| ribosomal protein S1 [Bacillus anthracis str. Sterne]
 gi|49328809|gb|AAT59455.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus
            thuringiensis serovar konkukian str. 97-27]
 gi|118416277|gb|ABK84696.1| SSU ribosomal protein S1P [Bacillus thuringiensis str. Al Hakam]
 gi|164715011|gb|EDR20529.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
 gi|167512980|gb|EDR88353.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
 gi|167531294|gb|EDR93972.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
 gi|170128577|gb|EDS97444.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
 gi|170669949|gb|EDT20690.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
 gi|172083664|gb|EDT68724.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
 gi|190560198|gb|EDV14178.1| ribosomal protein S1 [Bacillus anthracis str. Tsiankovskii-I]
 gi|195993960|gb|EDX57916.1| ribosomal protein S1 [Bacillus cereus W]
 gi|196022564|gb|EDX61247.1| ribosomal protein S1 [Bacillus cereus 03BB108]
 gi|218535461|gb|ACK87859.1| ribosomal protein S1 [Bacillus cereus AH820]
 gi|225787178|gb|ACO27395.1| ribosomal protein S1 [Bacillus cereus 03BB102]
 gi|227004701|gb|ACP14444.1| ribosomal protein S1 [Bacillus anthracis str. CDC 684]
 gi|228599641|gb|EEK57244.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
 gi|228662259|gb|EEL17862.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
 gi|228692762|gb|EEL46486.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
 gi|228814432|gb|EEM60697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
            BGSC 4AJ1]
 gi|228826804|gb|EEM72571.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228833004|gb|EEM78572.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|228845504|gb|EEM90537.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
            BGSC 4CC1]
 gi|229269019|gb|ACQ50656.1| ribosomal protein S1 [Bacillus anthracis str. A0248]
 gi|300375305|gb|ADK04209.1| 30S ribosomal protein S1 [Bacillus cereus biovar anthracis str. CI]
 gi|364511240|gb|AEW54639.1| SSU ribosomal protein S1p [Bacillus cereus F837/76]
 gi|384385153|gb|AFH82814.1| 30S ribosomal protein S1 [Bacillus anthracis str. H9401]
 gi|401186610|gb|EJQ93698.1| ribosomal protein S1 [Bacillus cereus ISP3191]
 gi|403394134|gb|EJY91375.1| 30S ribosomal protein S1 [Bacillus anthracis str. BF1]
          Length = 382

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVGGEVKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 539
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|429740622|ref|ZP_19274304.1| 30S ribosomal protein S1 [Porphyromonas catoniae F0037]
 gi|429160612|gb|EKY03070.1| 30S ribosomal protein S1 [Porphyromonas catoniae F0037]
          Length = 597

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 7/170 (4%)

Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
            E I  L    +++G VKN+TS G FI L   +D  V +++LS G V  P +   + + + 
Sbjct: 206  EIIGKLEKGQVLEGVVKNITSYGAFIDLG-GIDGLVHITDLSWGRVSHPSEVVALDQTLN 264

Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
              +L  +   KR+ + LK          +    +NL VGD V G++  +  YG FI +  
Sbjct: 265  VVILEFDEAKKRIALGLKQLQPHPWDSLD----ANLKVGDKVKGKVVVLADYGAFIEV-A 319

Query: 1366 TNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
              + GL H+SE+S   H+ + + I + G++V+  IL +D+E+R++SLG+K
Sbjct: 320  PGVEGLVHISEMSWTQHIRSAQDILKVGDEVEAVILSLDREERKMSLGLK 369



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 37/182 (20%)

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFI--------MLSRKLDAKVLLSNLSDGYVESPEKEFPI 1300
            E L  + +V+GYVK  T  G  +        +   ++D + +     D YV+    EF I
Sbjct: 122  EALEKDEVVRGYVKCRTKGGMIVDIFGIEAFLPGSQIDVRPIRD--YDAYVDKT-MEFKI 178

Query: 1301 GKL--------VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1352
             K+        V+ +VL        +E  L+      A ++EI  +  L  G ++ G +K
Sbjct: 179  VKINQDFKNVVVSHKVL--------IEAELE------AQKAEI--IGKLEKGQVLEGVVK 222

Query: 1353 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1412
             + SYG FI +   +  GL H+++LS   V +   +    + + V IL+ D+ K+RI+LG
Sbjct: 223  NITSYGAFIDLGGID--GLVHITDLSWGRVSHPSEVVALDQTLNVVILEFDEAKKRIALG 280

Query: 1413 MK 1414
            +K
Sbjct: 281  LK 282



 Score = 47.8 bits (112), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 9/161 (5%)

Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
            V+G V  +   G FI ++  ++  V +S +S   ++ S +    +G  V   +LS++   
Sbjct: 302  VKGKVVVLADYGAFIEVAPGVEGLVHISEMSWTQHIRSAQDILKVGDEVEAVILSLDREE 361

Query: 1316 KRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
            +++ + LK        +    N+     +G     +++   ++G+F+ IE   + GL H+
Sbjct: 362  RKMSLGLKQ-----LKEDPWENIDKRFPIGSRHTAKVRNFTNFGVFVEIEE-GIDGLVHI 415

Query: 1375 SELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
            S+LS    + +       G  +++ +L++DKE RR+SLG K
Sbjct: 416  SDLSWTKKIKHPNEFTEVGAPLEIVVLEIDKENRRLSLGHK 456


>gi|302518440|ref|ZP_07270782.1| ribosomal protein S1 [Streptomyces sp. SPB78]
 gi|318056317|ref|ZP_07975040.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actG]
 gi|318076495|ref|ZP_07983827.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actF]
 gi|302427335|gb|EFK99150.1| ribosomal protein S1 [Streptomyces sp. SPB78]
          Length = 504

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|199598703|ref|ZP_03212117.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus HN001]
 gi|229552180|ref|ZP_04440905.1| ribosomal protein S1 [Lactobacillus rhamnosus LMS2-1]
 gi|258508384|ref|YP_003171135.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG]
 gi|258539595|ref|YP_003174094.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus Lc 705]
 gi|385828053|ref|YP_005865825.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG]
 gi|385835243|ref|YP_005873017.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus ATCC 8530]
 gi|418070603|ref|ZP_12707878.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus R0011]
 gi|421768971|ref|ZP_16205680.1| SSU ribosomal protein S1p [Lactobacillus rhamnosus LRHMDP2]
 gi|421771234|ref|ZP_16207894.1| SSU ribosomal protein S1p [Lactobacillus rhamnosus LRHMDP3]
 gi|423078075|ref|ZP_17066762.1| putative ribosomal protein S1 [Lactobacillus rhamnosus ATCC 21052]
 gi|199590391|gb|EDY98483.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus HN001]
 gi|229314482|gb|EEN80455.1| ribosomal protein S1 [Lactobacillus rhamnosus LMS2-1]
 gi|257148311|emb|CAR87284.1| SSU/30S ribosomal protein S1P [Lactobacillus rhamnosus GG]
 gi|257151271|emb|CAR90243.1| SSU/30S ribosomal protein S1P [Lactobacillus rhamnosus Lc 705]
 gi|259649698|dbj|BAI41860.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus GG]
 gi|355394734|gb|AER64164.1| 30S ribosomal protein S1-like protein [Lactobacillus rhamnosus ATCC
            8530]
 gi|357540023|gb|EHJ24040.1| 30S ribosomal protein S1 [Lactobacillus rhamnosus R0011]
 gi|357552455|gb|EHJ34228.1| putative ribosomal protein S1 [Lactobacillus rhamnosus ATCC 21052]
 gi|411185367|gb|EKS52495.1| SSU ribosomal protein S1p [Lactobacillus rhamnosus LRHMDP2]
 gi|411185820|gb|EKS52946.1| SSU ribosomal protein S1p [Lactobacillus rhamnosus LRHMDP3]
          Length = 436

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 92/165 (55%), Gaps = 6/165 (3%)

Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            + P  +V+G V  +T+ G F+ L   +D  V +S +S  +V+ P     +G+ +  +VL+
Sbjct: 200  IQPGDVVEGKVARLTNFGAFVDLG-GVDGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLN 258

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
            V+P   R+ +++K     T  Q   +       G ++ G +KR+ ++G F+ +    + G
Sbjct: 259  VDPDRNRISLSIKA----TLPQPWDDIEEKAPAGSVLTGTVKRLTTFGAFVEV-FPGVEG 313

Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
            L H+S++S +HV     + + G++VKVK+L VD +  R++L +K+
Sbjct: 314  LVHISQISHEHVATPADVLKEGQEVKVKVLSVDPDAHRLALSIKA 358



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
           I++AS  E      + ++PG VV+GKV  + +FGA V   GGV  L  +  +S   + KP
Sbjct: 184 IVEASKAEARKEIFAKIQPGDVVEGKVARLTNFGAFVDL-GGVDGLVHVSEISFDHVDKP 242

Query: 415 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
               KVG E+  +VL V     RI+++ K TL +    I       +   +  G + ++ 
Sbjct: 243 SDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAPAGS---VLTGTVKRLT 299

Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
             G FV  + GV+G    S++  +    P+ +   GQ VK +++S  P + R+ LS 
Sbjct: 300 TFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVKVKVLSVDPDAHRLALSI 356



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 71/116 (61%), Gaps = 2/116 (1%)

Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
            GK +  +++ +EP   R+ ++ +     + +++     + +  GD+V G++ R+ ++G F
Sbjct: 160  GKELEFKIIEIEPSENRLILSHRAIVEASKAEARKEIFAKIQPGDVVEGKVARLTNFGAF 219

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +   +  GL HVSE+S DHVD    + + G+++KVK+L VD ++ RISL +K++
Sbjct: 220  VDLGGVD--GLVHVSEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRNRISLSIKAT 273



 Score = 45.8 bits (107), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 149/366 (40%), Gaps = 30/366 (8%)

Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
           VK G  VK  V+AV+    IV   G GV+ + P+  +S   I       KVG +L   VL
Sbjct: 23  VKIGDTVKADVLAVEDKQLIVGIEGTGVEGVVPIKELSTQPIDDIHDVAKVGDKLDLVVL 82

Query: 430 GVKSK-----RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
               K     +  ++ ++   +     + +  EA + +     +T + K G  V    GV
Sbjct: 83  STVGKDKENGQFLLSKRRLEAQKVWKEIQAKYEAGETITAP--VTSVVKGGLVVNA--GV 138

Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDD 540
           +GF P S +  D   E  + Y  G+ ++ +I+   P+  R+ LS             ++ 
Sbjct: 139 RGFVPAS-MVEDHFVEDLNQYK-GKELEFKIIEIEPSENRLILSHRAIVEASKAEARKEI 196

Query: 541 LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
             K+  G +V G V  +T     V +   G   G +    ++   +H      V+K G E
Sbjct: 197 FAKIQPGDVVEGKVARLTNFGAFVDL---GGVDGLVHVSEIS--FDHVDKPSDVLKVGQE 251

Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 657
              ++L +D + + + LS K +L      +   A      SV+ G V  +   G FV   
Sbjct: 252 IKVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAP---AGSVLTGTVKRLTTFGAFVEVF 308

Query: 658 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTD 714
             + G    S+      A  +     GQ V+  +L V+ +  R+ LS+K        S+D
Sbjct: 309 PGVEGLVHISQISHEHVATPADVLKEGQEVKVKVLSVDPDAHRLALSIKALQDRPAGSSD 368

Query: 715 ASFMQE 720
           AS   E
Sbjct: 369 ASEGHE 374



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 36/204 (17%)

Query: 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
            I  GD+V G+++++ +   G  V +G  + G VH +E+    V  P         D L  
Sbjct: 200  IQPGDVVEGKVARLTNF--GAFVDLG-GVDGLVHVSEISFDHVDKP--------SDVLK- 247

Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1251
               GQ +K KVL +         + LS++++L                   +  + IE+ 
Sbjct: 248  --VGQEIKVKVLNVDPDRN---RISLSIKATLP------------------QPWDDIEEK 284

Query: 1252 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
            +P   ++ G VK +T+ G F+ +   ++  V +S +S  +V +P      G+ V  +VLS
Sbjct: 285  APAGSVLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVKVKVLS 344

Query: 1311 VEPLSKRVEVTLKTSDSRTASQSE 1334
            V+P + R+ +++K    R A  S+
Sbjct: 345  VDPDAHRLALSIKALQDRPAGSSD 368


>gi|89898347|ref|YP_515457.1| 30S ribosomal protein S1 [Chlamydophila felis Fe/C-56]
 gi|89331719|dbj|BAE81312.1| 30S ribosomal protein S1 [Chlamydophila felis Fe/C-56]
          Length = 581

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 181/408 (44%), Gaps = 75/408 (18%)

Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVSGKIVKLL 316

Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
                G  ++I   + G +H +E+   KN+              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNVV-------------DPSEVVNKGDEVEAIVL 361

Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVHAEIKN 401

Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSTVEAVILSVDKESKKITLGV 461

Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
            K   S   ++ E         G  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLSSNPWNEIE----KMFPTGSNISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1430
              IE I   G+ V  K++K+D + +++SL +K   +  D  N Q  ++
Sbjct: 517  SKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE--YLADKQNDQTDAD 562



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVSGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 431
           G+ V  ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+ +   +L V 
Sbjct: 392 GLHVHAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSTVEAVILSVD 451

Query: 432 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
            +SK+IT+  K+        I   +   ++     G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEKMFPTGSN---ISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 190/477 (39%), Gaps = 74/477 (15%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 425
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQAEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 539
            F P S+  +D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQ--IDNKKIKNLDDYVGKVCEFKIL-KINIDRRNVVVSRRELLEAERISKKAEL 213

Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
            + + +G    GVV  +T     V++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGVVKNITDFG--VFLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVSGKIVKLLPYGAF 321

Query: 654 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVHAEIKNLTNYGAFVELEPG 414

Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
                H     +I          + GS ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSTVEAVILSVDKESKKITLGVKQLSSNPWNE 471


>gi|443628333|ref|ZP_21112687.1| putative 30S ribosomal protein S1 [Streptomyces viridochromogenes
            Tue57]
 gi|443338157|gb|ELS52445.1| putative 30S ribosomal protein S1 [Streptomyces viridochromogenes
            Tue57]
          Length = 498

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 187/416 (44%), Gaps = 66/416 (15%)

Query: 1020 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1069
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1129
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1248
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1367
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 375



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|51244751|ref|YP_064635.1| 30S ribosomal protein S1 [Desulfotalea psychrophila LSv54]
 gi|50875788|emb|CAG35628.1| probable 30S ribosomal protein S1 [Desulfotalea psychrophila LSv54]
          Length = 570

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 158/356 (44%), Gaps = 38/356 (10%)

Query: 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
            S ++ G ++KG +  +  +G  +   GG+  LC +  +S   +  P K +KVG EL  +
Sbjct: 192 RSKLEEGQIIKGAITNITDYGLFIDM-GGMDGLCHITDLSWGRVSHPAKLYKVGEELEVK 250

Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH----GWITKIEKHGCFVRFYNG 483
           VL     +    H +  +  K      +A   DR        G +  I  +G FV    G
Sbjct: 251 VL-----KYDKEHDRVSLGVKQLRDDPWATVVDRYPVSQQATGKVVSITDYGVFVELEEG 305

Query: 484 VQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 542
           V+G    SE+        PS M  VG  ++  +++    ++RI+L   MK  + +  DLV
Sbjct: 306 VEGLIHVSEMTWSKKPRHPSKMVAVGDEIEVMVLNIETETKRISLG--MKQLQPNPWDLV 363

Query: 543 K----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVI 593
                +GS++ G +  +T   V +     G  +G     H++D      ++H T   +  
Sbjct: 364 TENYPVGSIIEGKIKNITDFGVFI-----GIEEGIDGLIHVSDLSWTERIKHPTEKYA-- 416

Query: 594 KPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIET 650
               E  Q +VL  D E+    L  K  + +  Q+    A + +P+ +VV G + N+ + 
Sbjct: 417 --KGEMIQAVVLKIDKENERFSLGVKQLIPDPWQE----AYNNYPSGTVVEGEITNVTDF 470

Query: 651 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           G FV+    + G    S+    +       Y VG ++++ +++V+++  +I LS+K
Sbjct: 471 GVFVKLEEGIEGLVHVSEISKDKIKTPVGMYQVGDTLKAIVINVSAKDRKIGLSVK 526



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 168/386 (43%), Gaps = 69/386 (17%)

Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
            IG+++   VL  NK++  + +  R   +   +K      + M++ + EG I+ G I+ I 
Sbjct: 154  IGESLEFKVLKFNKKRNNVVISRRAILEEARNKL----REEMRSKLEEGQIIKGAITNIT 209

Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FD----------- 1187
                GL + +G  + G  H T+L    VS P   Y  G+        +D           
Sbjct: 210  DY--GLFIDMG-GMDGLCHITDLSWGRVSHPAKLYKVGEELEVKVLKYDKEHDRVSLGVK 266

Query: 1188 --------------PLSGYDEGQFVKCK----VLEISRTVRGTFHV-ELSLRSSLDGMSS 1228
                          P+S    G+ V        +E+   V G  HV E++        S 
Sbjct: 267  QLRDDPWATVVDRYPVSQQATGKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSK 326

Query: 1229 TNSSD-----LSTDVDTPGKHLE-KIEDLSPN------------MIVQGYVKNVTSKGCF 1270
              +       +  +++T  K +   ++ L PN             I++G +KN+T  G F
Sbjct: 327  MVAVGDEIEVMVLNIETETKRISLGMKQLQPNPWDLVTENYPVGSIIEGKIKNITDFGVF 386

Query: 1271 IMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
            I +   +D  + +S+LS    ++ P +++  G+++   VL ++  ++R  + +K      
Sbjct: 387  IGIEEGIDGLIHVSDLSWTERIKHPTEKYAKGEMIQAVVLKIDKENERFSLGVKQLIPDP 446

Query: 1330 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1389
              ++     +N   G +V G+I  V  +G+F+ +E   + GL HVSE+S+D +     +Y
Sbjct: 447  WQEA----YNNYPSGTVVEGEITNVTDFGVFVKLEE-GIEGLVHVSEISKDKIKTPVGMY 501

Query: 1390 RAGEKVKVKILKVDKEKRRISLGMKS 1415
            + G+ +K  ++ V  + R+I L +K+
Sbjct: 502  QVGDTLKAIVINVSAKDRKIGLSVKT 527



 Score = 48.9 bits (115), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 78/408 (19%), Positives = 165/408 (40%), Gaps = 57/408 (13%)

Query: 917  KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 976
            +AI E E  +  R + +S  + G +++  IT I    L +  G G  G  HIT+++  + 
Sbjct: 177  RAILE-EARNKLREEMRSKLEEGQIIKGAITNITDYGLFIDMG-GMDGLCHITDLSWGRV 234

Query: 977  NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV 1036
            +    L+   K+G+ +  +++    + D     + +L   P    V              
Sbjct: 235  SHPAKLY---KVGEELEVKVLKYDKEHDRVSLGVKQLRDDPWATVVDR-----------Y 280

Query: 1037 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1096
             + Q+ TG V  + +    + +   ++  + + +  +   + +   +   +G  +   VL
Sbjct: 281  PVSQQATGKVVSITDYGVFVELEEGVEGLIHVSEMTW-SKKPRHPSKMVAVGDEIEVMVL 339

Query: 1097 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1156
            +I  E K + L ++  Q        D+  +N       G I+ G+I  I     G+ + I
Sbjct: 340  NIETETKRISLGMKQLQP----NPWDLVTENYPV----GSIIEGKIKNITDF--GVFIGI 389

Query: 1157 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1216
               + G +H ++L           + E    P   Y +G+ ++  VL+I +         
Sbjct: 390  EEGIDGLIHVSDLS----------WTERIKHPTEKYAKGEMIQAVVLKIDKE-------- 431

Query: 1217 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1276
             + R SL G+              P    E   +     +V+G + NVT  G F+ L   
Sbjct: 432  -NERFSL-GVKQL----------IPDPWQEAYNNYPSGTVVEGEITNVTDFGVFVKLEEG 479

Query: 1277 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
            ++  V +S +S   +++P   + +G  +   V++V    +++ +++KT
Sbjct: 480  IEGLVHVSEISKDKIKTPVGMYQVGDTLKAIVINVSAKDRKIGLSVKT 527


>gi|228938709|ref|ZP_04101313.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
            ATCC 10792]
 gi|228971591|ref|ZP_04132214.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228978201|ref|ZP_04138578.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|384185506|ref|YP_005571402.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar chinensis
            CT-43]
 gi|410673799|ref|YP_006926170.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|423382992|ref|ZP_17360248.1| ribosomal protein S1 [Bacillus cereus BAG1X1-2]
 gi|423530548|ref|ZP_17506993.1| ribosomal protein S1 [Bacillus cereus HuB1-1]
 gi|452197822|ref|YP_007477903.1| SSU ribosomal protein S1p [Bacillus thuringiensis serovar
            thuringiensis str. IS5056]
 gi|228781218|gb|EEM29419.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|228788114|gb|EEM36070.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228820950|gb|EEM66971.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
            ATCC 10792]
 gi|326939215|gb|AEA15111.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar chinensis
            CT-43]
 gi|401643852|gb|EJS61546.1| ribosomal protein S1 [Bacillus cereus BAG1X1-2]
 gi|402447063|gb|EJV78921.1| ribosomal protein S1 [Bacillus cereus HuB1-1]
 gi|409172928|gb|AFV17233.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|452103215|gb|AGG00155.1| SSU ribosomal protein S1p [Bacillus thuringiensis serovar
            thuringiensis str. IS5056]
          Length = 382

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 130/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K +          SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVIEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|423647524|ref|ZP_17623094.1| ribosomal protein S1 [Bacillus cereus VD169]
 gi|401285478|gb|EJR91317.1| ribosomal protein S1 [Bacillus cereus VD169]
          Length = 382

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFVPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 122/273 (44%), Gaps = 44/273 (16%)

Query: 1088 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1147
            GK +   ++ +++EK   R++L      + +  +D       + + EGD+V G + ++  
Sbjct: 146  GKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTD 201

Query: 1148 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
               G  V +G  + G VH +++ +  V  P    ++GQ            VK KVL +  
Sbjct: 202  F--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK-----------VKVKVLSVDA 247

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                T  + LS++++                  PG       ++    I +G VK + + 
Sbjct: 248  D---TQRISLSIKAA-----------------QPGPWENVAGEIKAGDIREGVVKRLVTF 287

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK---- 1323
            G F+ +   ++  V +S +++ +V++P +   +G+ V  +VL V    KR+ +++K    
Sbjct: 288  GAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALE 347

Query: 1324 -TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
              + +   SQ E N + +   + DI+  Q+K++
Sbjct: 348  ENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|257867659|ref|ZP_05647312.1| ribosomal protein S1 [Enterococcus casseliflavus EC30]
 gi|257873988|ref|ZP_05653641.1| ribosomal protein S1 [Enterococcus casseliflavus EC10]
 gi|257876567|ref|ZP_05656220.1| ribosomal protein S1 [Enterococcus casseliflavus EC20]
 gi|325571138|ref|ZP_08146710.1| 30S ribosomal protein S1 [Enterococcus casseliflavus ATCC 12755]
 gi|420263971|ref|ZP_14766606.1| ribosomal protein S1 [Enterococcus sp. C1]
 gi|257801742|gb|EEV30645.1| ribosomal protein S1 [Enterococcus casseliflavus EC30]
 gi|257808152|gb|EEV36974.1| ribosomal protein S1 [Enterococcus casseliflavus EC10]
 gi|257810733|gb|EEV39553.1| ribosomal protein S1 [Enterococcus casseliflavus EC20]
 gi|325156223|gb|EGC68409.1| 30S ribosomal protein S1 [Enterococcus casseliflavus ATCC 12755]
 gi|394768870|gb|EJF48747.1| ribosomal protein S1 [Enterococcus sp. C1]
          Length = 404

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 99/183 (54%), Gaps = 6/183 (3%)

Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
            DL     V+G V  +T  G F+ L   +D  V +S +S G+V  P     +G  V  R+L
Sbjct: 202  DLYEGQEVEGKVARLTDFGAFVDLG-GIDGLVHVSEISHGHVGKPSDVLSVGDTVNVRIL 260

Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1369
            SV+   +RV +++K  D+     + I   +   VG ++ G +KR+ S+G F+ +    + 
Sbjct: 261  SVDADKERVSLSIK--DTLPGPWTNIEEQAA--VGSVLTGTVKRLTSFGAFVEV-FPGVE 315

Query: 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1429
            GL H+S++S  H+     + + G++V+VK+L+V+  + RI+L +K+     + +  Q  S
Sbjct: 316  GLIHISQISHKHIATPHEVLQEGDEVQVKVLEVNPSEHRIALSIKALEKAENTNETQEVS 375

Query: 1430 EEE 1432
            E++
Sbjct: 376  EDD 378



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 9/176 (5%)

Query: 1243 KHLEKIE-DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1301
            K  E IE D     I++  V NV   G  + +  +    V  S + D +V   + E   G
Sbjct: 108  KVWEDIEKDFQEGKIIEAPVTNVVKGGLVVDVGVR--GFVPASMVEDHFV--ADFEDYKG 163

Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
            K +  +++ +EP   R+ ++ K   ++  A Q E   L++L+ G  V G++ R+  +G F
Sbjct: 164  KTLTFKIVEIEPSENRLILSHKAVVEAEKAKQKEAL-LADLYEGQEVEGKVARLTDFGAF 222

Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
            + +   +  GL HVSE+S  HV     +   G+ V V+IL VD +K R+SL +K +
Sbjct: 223  VDLGGID--GLVHVSEISHGHVGKPSDVLSVGDTVNVRILSVDADKERVSLSIKDT 276



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 14/182 (7%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           +D+  G  V+GKV  +  FGA V   GG+  L  +  +S   + KP     VG  +  R+
Sbjct: 201 ADLYEGQEVEGKVARLTDFGAFVDL-GGIDGLVHVSEISHGHVGKPSDVLSVGDTVNVRI 259

Query: 429 LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V +  +R++++ K TL      I    A  +   +  G + ++   G FV  + GV+G
Sbjct: 260 LSVDADKERVSLSIKDTLPGPWTNIEEQAAVGS---VLTGTVKRLTSFGAFVEVFPGVEG 316

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSE 538
               S++       P  +   G  V+ +++   P+  RI LS           +   VSE
Sbjct: 317 LIHISQISHKHIATPHEVLQEGDEVQVKVLEVNPSEHRIALSIKALEKAENTNETQEVSE 376

Query: 539 DD 540
           DD
Sbjct: 377 DD 378



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 146/360 (40%), Gaps = 27/360 (7%)

Query: 360 AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKF 418
           + E  +    +VK G +VKG+V+A++   AIV   G GV+ + P   +S   +    +  
Sbjct: 15  SMEAALDNFQEVKVGDIVKGEVLAIEDKQAIVGIEGAGVEGVVPAKELSTLPVEDINEAV 74

Query: 419 KVGAEL---VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 475
           KVG  L   V   +G   +  +    K  + +K        +  +  I    +T + K G
Sbjct: 75  KVGDVLELVVISAIGKDKENGSYLLSKRRLDAKKVWEDIEKDFQEGKIIEAPVTNVVKGG 134

Query: 476 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---- 531
             V    GV+GF P S +  D        Y  G+ +  +I+   P+  R+ LS       
Sbjct: 135 LVVDV--GVRGFVPAS-MVEDHFVADFEDYK-GKTLTFKIVEIEPSENRLILSHKAVVEA 190

Query: 532 KPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 589
           +  +  E  L  L  G  V G V  +T     V +   G   G +   H+++ + H  V 
Sbjct: 191 EKAKQKEALLADLYEGQEVEGKVARLTDFGAFVDL---GGIDGLV---HVSE-ISHGHVG 243

Query: 590 K--SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 646
           K   V+  G   + ++L +D +   + LS K +L      +   A+     SV+ G V  
Sbjct: 244 KPSDVLSVGDTVNVRILSVDADKERVSLSIKDTLPGPWTNIEEQAA---VGSVLTGTVKR 300

Query: 647 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
           +   G FV     + G    S+      A   +    G  V+  +L+VN    RI LS+K
Sbjct: 301 LTSFGAFVEVFPGVEGLIHISQISHKHIATPHEVLQEGDEVQVKVLEVNPSEHRIALSIK 360


>gi|229016854|ref|ZP_04173782.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
 gi|229023060|ref|ZP_04179574.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
 gi|423420453|ref|ZP_17397542.1| ribosomal protein S1 [Bacillus cereus BAG3X2-1]
 gi|228738206|gb|EEL88688.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
 gi|228744415|gb|EEL94489.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
 gi|401102362|gb|EJQ10349.1| ribosomal protein S1 [Bacillus cereus BAG3X2-1]
          Length = 382

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1035 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1152
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFNSGYVFDVTVKDIVNG--GL 118

Query: 1153 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1208 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1267
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1268 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1328 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1388 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 43.9 bits (102), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|148272934|ref|YP_001222495.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
 gi|170782356|ref|YP_001710689.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
            sepedonicus]
 gi|147830864|emb|CAN01808.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
 gi|169156925|emb|CAQ02093.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
            sepedonicus]
          Length = 484

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 170/384 (44%), Gaps = 60/384 (15%)

Query: 1039 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094
            G  + G V K+D +  L+ +       + ++   +    +P+E+        +G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLIDVGYKTEGVIPSRELSIKHDVDPTEV------VKVGDTVEAL 91

Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1153
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVEK------IKESDGVVTGTVIEVVKG--GLI 141

Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
            V IG   +      EL+ +    P  G               Q ++ K+LE+ +      
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG---------------QEIEAKILELDKNRN--- 183

Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
            +V LS R+ L+   S + S               + +L    + +G V ++ + G F+ L
Sbjct: 184  NVVLSRRALLEQTQSESRSTF-------------LNNLQKGQVRKGVVSSIVNFGAFVDL 230

Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
               +D  V +S LS  ++E   +   +G+ V   +L V+   +RV ++LK +      + 
Sbjct: 231  G-GVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKAT-----QED 284

Query: 1334 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1392
                 +  H +G +  G++ ++  +G F+ +    + GL H+SELS  HV+  E +   G
Sbjct: 285  PWQVFARTHAIGQVAPGKVTKLVPFGAFVRVAE-GIEGLVHISELSGKHVELAEQVVSVG 343

Query: 1393 EKVKVKILKVDKEKRRISLGMKSS 1416
            ++V VK++ +D E+RRISL +K +
Sbjct: 344  DEVFVKVIDIDLERRRISLSLKQA 367



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 157/349 (44%), Gaps = 33/349 (9%)

Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
           G +++G V+ +D    ++      + + P   +S    V P +  KVG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLIDVGYKTEGVIPSRELSIKHDVDPTEVVKVGDTVEALVLQKED 97

Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
           K  R+ ++ K+   +     +    E +D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVEKIKE-SDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R +  + ++
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRSTFLNNLQ 209

Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
            G +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
           +L +D +   + LS K +  +  Q      +  H    V  G V  ++  G FVR    +
Sbjct: 264 ILEVDLDRERVSLSLKATQEDPWQVF----ARTHAIGQVAPGKVTKLVPFGAFVRVAEGI 319

Query: 661 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 708
            G    S+ + G+  +L+ +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGDEVFVKVIDIDLERRRISLSLKQA 367



 Score = 47.8 bits (112), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
           ++++ G V KG V ++ +FGA V   GGV  L  +  +S   I    +  +VG E+   +
Sbjct: 206 NNLQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEI 264

Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
           L V    +R++++ K T          ++A      +  G +TK+   G FVR   G++G
Sbjct: 265 LEVDLDRERVSLSLKATQEDPWQVFARTHAIGQ---VAPGKVTKLVPFGAFVRVAEGIEG 321

Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
               SEL          +  VG  V  +++      RRI+LS 
Sbjct: 322 LVHISELSGKHVELAEQVVSVGDEVFVKVIDIDLERRRISLSL 364


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.317    0.134    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,851,661,615
Number of Sequences: 23463169
Number of extensions: 1118690466
Number of successful extensions: 3911363
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7140
Number of HSP's successfully gapped in prelim test: 9187
Number of HSP's that attempted gapping in prelim test: 3776892
Number of HSP's gapped (non-prelim): 94437
length of query: 1810
length of database: 8,064,228,071
effective HSP length: 157
effective length of query: 1653
effective length of database: 8,675,477,834
effective search space: 14340564859602
effective search space used: 14340564859602
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 85 (37.4 bits)