BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000236
(1810 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
Length = 1871
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/1896 (29%), Positives = 919/1896 (48%), Gaps = 201/1896 (10%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
+++ GM++ G V EVNE +LVI LP GL+G + + D NE E L
Sbjct: 78 ESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLL 137
Query: 58 -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
LP +F G LV C+V L + GK+ + LSL + + LS E ++ GM+LT V
Sbjct: 138 HLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVS 195
Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
S+EDHGY++ G+ FLP E N G +K G L +V + VV L
Sbjct: 196 SLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSL 255
Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
S VS + + + +++ L+PG++V +VQ + G+ L+FLT+FTG VD HL
Sbjct: 256 SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDP 315
Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
T + N + V A IL V P +R V L+L P L P + + +G + D
Sbjct: 316 KKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDD 370
Query: 289 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
V + G + + AY +S +++ + + +K G+ + RI+ + +
Sbjct: 371 VPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQM 427
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+ LA L+ S E + D++PG VVKG V+ + S+G +V+ ++ L P H+++
Sbjct: 428 DELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLAD 487
Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
+ P KK+ +G E+ RVL ++K++ +T KKTL++SKL +++ YA+A L THG
Sbjct: 488 ILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHG 547
Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
+I +++ +GC V+FYN VQG P+ EL + +P +++ GQVVK +++ P+ R+
Sbjct: 548 FIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML 607
Query: 527 LSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
LSF + +P S+ + +G LV V T + + V V+ + +PT
Sbjct: 608 LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPT 666
Query: 577 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
HL+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P + S I
Sbjct: 667 SHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEI 726
Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
HP ++ G+V +I + G F++F L+G AP++ D S + GQ+V + + +V
Sbjct: 727 HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 786
Query: 695 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFII 749
+ E R+ LSL+ S C D + + LL + + LQ S + ++ +
Sbjct: 787 DEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTP 845
Query: 750 GSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 808
G ++ V E D VV S D+ + + AG VESG + IL+V +
Sbjct: 846 GMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLE 905
Query: 809 VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 868
V +SL + NR+A+K ++ E HQ AIV+ +++++ + SL E
Sbjct: 906 VHVSLHQDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVET 947
Query: 869 NHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 927
H ++ S N T +F ++ GQ V T+ T L + A T +
Sbjct: 948 GHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQ 1007
Query: 928 KRAK-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 970
K ++ KK + +G +V + IKP + + G G IH +
Sbjct: 1008 KDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASH 1067
Query: 971 VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKP 1017
+ DD + K+G+TVTAR+I DM K+F + ELS++P
Sbjct: 1068 ILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRP 1122
Query: 1018 SML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1070
S L T S E+ GQ VT ++ Y V +W + I+ ++ ++ +L
Sbjct: 1123 SELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1182
Query: 1071 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQ 1129
++ L+ ++F +G+A+ V+ + K LL L L P +
Sbjct: 1183 TSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHK---------------- 1226
Query: 1130 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1189
+ EG++ GR+ K+ G L F ++ + + Y E PL
Sbjct: 1227 --LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPL 1272
Query: 1190 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1249
+ + V+C +L + V + LSLR SS + + + V+ P + I+
Sbjct: 1273 EDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQ 1319
Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKL 1303
D+ +++GYV ++ G F L + V L+ S SP K+ P GKL
Sbjct: 1320 DIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKL 1376
Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
+ RVL + VE++ D+ + + LS G + + ++ E+
Sbjct: 1377 LTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEERDQKG 1431
Query: 1364 ENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
E N ++ ++ V+ + R G + + + E+ R+S
Sbjct: 1432 EKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKP 1487
Query: 1414 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQ 1473
K + + D+L E E EE + E + + ++ G + +
Sbjct: 1488 KKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGL 1543
Query: 1474 IESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRA 1533
++PPL + D E+ + + TI K ++ ++ EK++ E+E+
Sbjct: 1544 DSLTPALPPLAESSDSEEDEKPH-----------QATI--KKSKKERELEKQKAEKELSR 1590
Query: 1534 AEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1592
EE L++ P + D+F+RLV SSPNSS +W++YMAF L ++EKAR++AERAL+TI+
Sbjct: 1591 IEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTIS 1650
Query: 1593 IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1652
REE EKLN+WVA NLEN YG+ +E++ KVF+RA+QY +P KV L L +Y ++E+ +
Sbjct: 1651 FREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQ 1708
Query: 1653 LADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTA 1711
A EL +M+K+F+ VW++ LL++ Q V+QRAL LP +H+ I++ A
Sbjct: 1709 EAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFA 1768
Query: 1712 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1771
LEF+ G A+R +++FE LS YPKRTD+WS+Y+D I+ G +R +FER I LSL P
Sbjct: 1769 QLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAP 1828
Query: 1772 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
K+MKF FK+YL+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1829 KRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864
>sp|O74835|RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rrp5 PE=1 SV=1
Length = 1690
Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust.
Identities = 390/1393 (27%), Positives = 655/1393 (47%), Gaps = 198/1393 (14%)
Query: 484 VQGFAPRSEL------GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-----K 532
+ GFA S L G+ P P Y V + RI++ LSF +
Sbjct: 424 ISGFAHISRLSDKKVAGISPNSGP---YKVDSTHEARIINYSYVDNLYILSFQQSVLNQQ 480
Query: 533 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATV 588
R+ + +++G V G + + P +VV I++G + G +P+ H+AD E
Sbjct: 481 FLRIED---IEVGQFVDGTIAKLIPQGIVV-TISEGIN-GLVPSTHMADIALQFPERRFK 535
Query: 589 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 648
+ S +K ++L + +LL+ K SL+N+ L D P + G + I
Sbjct: 536 VGSSVKC-----RVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIF 590
Query: 649 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
E G V F + F P S+ + D + + VGQ++ I+ + E ++ + ++
Sbjct: 591 EDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQ 650
Query: 709 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 768
S DA L+ E GSV+ G V + + V+V
Sbjct: 651 ---SWDAK-----------------------RLERFENIKAGSVLSGIVLQKTEDSVIVD 684
Query: 769 FEEHSDVYGFITHHQLAGATVESGSVI-----------QAAILDVAKAERLVDLSLKTVF 817
+ V G IT QL + S + + +L +++L+ LSLK
Sbjct: 685 LGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSL 742
Query: 818 IDRFREANSNRQAQKKKRKREASKDLGV---HQTVNAIVEIVKENYLVLSLPEYNHSIGY 874
++ +E NR +E K G T VE + LV +P+ S Y
Sbjct: 743 VEAAKE---NRMPINITDLKEGIKYFGFVRNATTFGVFVEFC--DGLVALVPKAYISEEY 797
Query: 875 ASVSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSSTAGRLLLLLKAISET 922
V P + QSV +++ P + + + +++ +
Sbjct: 798 VPV--------PSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDI 849
Query: 923 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 980
+ + KK Y G + A +T K +L + HGR+ ++EV D+ +V+
Sbjct: 850 DNPVDETIKKTYDYVAGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPN 909
Query: 981 NLFSNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLL 1030
F G + R++ + + K K FL ELS++PS+L + K
Sbjct: 910 KPLKRFHKGDKIRVRVLGIHDSRNHKFLPISHRVSPKQFL-ELSVRPSILNMEPFSMK-- 966
Query: 1031 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1090
E G VTG+V V E ++++ + ++ ILD + EL Q+ F +GKA
Sbjct: 967 --EPQFKKGDEVTGFVNNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKA 1024
Query: 1091 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1150
+ +V +N E + + P Q G + T G + G+++ +
Sbjct: 1025 IKCYV--VNAEDSITLSAIGPLQ-GFENLT-------------PGSRLVGKVTNV--NEA 1066
Query: 1151 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
G ++Q+ H+ GRV ++ +D+ P + + V VL + R
Sbjct: 1067 GAILQLPGHMSGRVSRIDM-----------FDDYDILPETKFTRNNLVGVCVLSVDVPNR 1115
Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
+S+ NS S V+ K + ++DL I +G+V NV ++G F
Sbjct: 1116 KV------------ALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQGLF 1163
Query: 1271 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
+ + L A+V + L D +++ + F + +LV G ++ ++ SKR+E++LK S +
Sbjct: 1164 VTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQS--KIK 1221
Query: 1331 SQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETI 1388
SEI +++ VG + G + +V YG+ I I+ T N+VGLCH SE+++ V NI +
Sbjct: 1222 DSSEITKTFADIAVGSNLDGTVVKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKL 1281
Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKSSYFKN--------DADNLQMSSEEESDEAIEEV 1440
Y +G+KV+ +L VD EKRRI+LG+KSSYF + + ++++M SE++SD + EV
Sbjct: 1282 YSSGDKVRAHVLDVDSEKRRIALGLKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEV 1341
Query: 1441 GSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD--MDNGI 1498
GS + D++SE+ +L A E ++E+P NG
Sbjct: 1342 GSKD---------------DVQSEEVENLESAGDED-----------EEEEPSALQANGF 1375
Query: 1499 SQNQGHT--DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS 1556
G T D+ E + ++ K ++ + R +E + P T +FER + S
Sbjct: 1376 DWTDGSTVFDKLADDTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEIPSTAADFERQLLS 1435
Query: 1557 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1616
SPNSS +WI YMA+ L++ ++++AR + +RAL TIN REE+EKLN+W+A NLE YG
Sbjct: 1436 SPNSSLLWISYMAYHLNLNELQEAREVGKRALSTINYREEDEKLNVWMALLNLEVAYGT- 1494
Query: 1617 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRV 1676
E+++ +VF+ A YCD V+ L G+ + + LADE + M+K FK VW++
Sbjct: 1495 -EDSLKEVFKEACAYCDALIVYEKLCGILIKGGKVDLADEYMQLMLKNFKQVPSVWIQYA 1553
Query: 1677 QRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1735
LL + E +++R+L SLP+ +H+ I + AILEFKNG +RGR++FEG+LS YP
Sbjct: 1554 TFLLNNDKAEKAHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPERGRTIFEGLLSSYP 1613
Query: 1736 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1795
KR DLW++ +D E++ D ++R LF+R ++L+L KK KF FKK+L YEK++G++E E
Sbjct: 1614 KRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKWLAYEKNIGDDEGAE 1673
Query: 1796 YVKQKAMEYVEST 1808
VK++A+EYV +
Sbjct: 1674 QVKRRAIEYVSES 1686
Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 315/1291 (24%), Positives = 549/1291 (42%), Gaps = 157/1291 (12%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDNEIEAN--- 53
+NI+ G + G +A++N DL + LP L G + +D LD I DN E N
Sbjct: 104 KNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSI-DNHAEDNAAT 162
Query: 54 --EDNL-----LPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIWLSLRLSLLYKGLSLETV 105
ED L L ++ VGQ V V L ++ + GKR I LSL+ G + E
Sbjct: 163 EEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDA-NGSAPEAA 221
Query: 106 Q--EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSID 163
G ++ A V SIEDHG + G+ ++TGFL + ++ N V+ LL V+ D
Sbjct: 222 DFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKKHI--NDFPFVEGQSLLCSVISKED 279
Query: 164 RTRKVVYLSSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 222
R + +LS ++ TK L+ + S+ ++PG ++ V I E+GV+ ++
Sbjct: 280 R---IFHLS-----LTATSTKALEVMPSVQAILPGDYINVLVTDIKESGVIAKYMGVVDV 331
Query: 223 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVG-----LTLNPYLLHNR 274
T DI+H + + ++ + K V AR+LFV DP AV LT N + N
Sbjct: 332 TSDIYH-SSPVKGEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSFLPHVLTFN-FATPNT 389
Query: 275 APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYK 333
P + +G I + +KV V LG+ D+ +S A+++ +SD + YK
Sbjct: 390 PHPDQLDIGFIVNAAKVTYVSSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPNSGPYK 449
Query: 334 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 393
S RI+ + +++ L + S D++ G V G + + G +V
Sbjct: 450 VDSTHEARIINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVDGTIAKLIPQGIVVTI 509
Query: 394 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAI 451
G+ L P HM++ + P ++FKVG+ + RVL V KR+ +T KK+L+ + L +
Sbjct: 510 SEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNTDLPL 569
Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
+ Y +AT T G + +I + G V FYN V+ F P SE+ + + VGQ +
Sbjct: 570 IYDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTL 629
Query: 512 KCRIMSSIPASRRINLSFMMK---PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 568
I+S P +R++ + + R+ + +K GS++SG+V T ++V+V + K
Sbjct: 630 SVTIVSCDPENRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDK- 688
Query: 569 YSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQ 625
G I L D L + + + ++ + ++LVL ++S L LS K SL+ +A+
Sbjct: 689 -VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAK 747
Query: 626 Q--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 683
+ +P + + + G+V N G FV F L P++ + S Y
Sbjct: 748 ENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKAYISEEYVPVPSAVYKP 807
Query: 684 GQSVRSNILDVNSETGRITLSLKQSCCSSTDA-SFMQEHFLLEEKIAMLQSSKHNGSELK 742
QSV L V + +S K A FM+ + ++ + ++
Sbjct: 808 QQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPVDETIKKTYD----- 862
Query: 743 WVEGFIIGSVI-EGKVHESN-DFGV----VVSFEEHSDVYGFITHHQLAGATVESGSVIQ 796
+V G I +V+ K + N D V E D +G I G I+
Sbjct: 863 YVAGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPNKPLKRFHKGDKIR 922
Query: 797 AAILDV--------------AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 842
+L + ++ ++LS++ ++ E S ++ Q KK
Sbjct: 923 VRVLGIHDSRNHKFLPISHRVSPKQFLELSVRPSILN--MEPFSMKEPQFKKG------- 973
Query: 843 LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASV-SDYNTQKFPQKQFLNGQSVIATVM 901
+ + + KE V P N I + +D QK F G+++ V+
Sbjct: 974 ---DEVTGFVNNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKAIKCYVV 1030
Query: 902 ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIG 961
S T L AI + + GS + ++T + L+
Sbjct: 1031 NAEDSIT-------LSAIGPLQGFENLTP--------GSRLVGKVTNVNEAGAILQLPGH 1075
Query: 962 FHGRIHITEVNDDKSNVVENLFS-NFKIGQTVTA-----RIIAKSNKPDMKKSFLWELSI 1015
GR+ ++ DD + E F+ N +G V + R +A S + +S
Sbjct: 1076 MSGRVSRIDMFDDYDILPETKFTRNNLVGVCVLSVDVPNRKVALSARNSRTQS------- 1128
Query: 1016 KPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP 1075
+P + EI S + D+ G +V V N+ +TI +L A++ I
Sbjct: 1129 QPVEIKDKEINSVDDLKIGDICRG-----FVCNVANQGLFVTIGHNLIARVKI--GELFD 1181
Query: 1076 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IH 1133
+ +++++ FH+ + V G ++ I+ + K + + L+ Q I D S++ +TF I
Sbjct: 1182 TFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLK--QSKIKD-----SSEITKTFADIA 1234
Query: 1134 EGDIVGGRISKILSGVGGLVVQIG--PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1191
G + G + K+ G G++++I ++ G H +E+ + V +
Sbjct: 1235 VGSNLDGTVVKV--GDYGVLIRIDGTDNIVGLCHKSEIADAVV-----------LNISKL 1281
Query: 1192 YDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1222
Y G V+ VL++ R + L L+SS
Sbjct: 1282 YSSGDKVRAHVLDVDSEKR---RIALGLKSS 1309
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 194/908 (21%), Positives = 347/908 (38%), Gaps = 174/908 (19%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH 63
++I G + G +A++ + +V+ + G+ GL + D L F
Sbjct: 485 EDIEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTHMADIAL---------QFPERRFK 535
Query: 64 VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSL----ETVQEGMVLTAYVKSIE 119
VG V C VL + + ++++ L+L+ SLL L L E G + I
Sbjct: 536 VGSSVKCRVLSTN-----VLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIF 590
Query: 120 DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 179
+ G I+ F S FLP + ++E D + + +T V +S DP+
Sbjct: 591 EDGAIVEF-YNSVRAFLPVSEMSEAYIRDAREHF-------KVGQTLSVTIVSCDPENRK 642
Query: 180 KCV-----TKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 233
V + D K + + + G ++S V E+ V++ TG + + L +
Sbjct: 643 MRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDKVTGVITLGQLCD-- 700
Query: 234 PTTNWKNDYNQHKKVNAR-----------ILFVDPTSRAVGLTLNPYLLH----NRAPPS 278
D N+ KV + +L D + + + L+L L+ NR P
Sbjct: 701 ------GDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRMP-- 752
Query: 279 HVKVGDIYDQSK---VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 335
+ + D+ + K VR G+ ++ V A V + ++EE V YK
Sbjct: 753 -INITDLKEGIKYFGFVRNATTFGVFVEFCDGLV---ALVPKAYISEEYVPVPSAVYKPQ 808
Query: 336 SCVRVRIL--------GFRHLEGLATGILKASAF------------EGLVFTHSDVKPGM 375
V L F + LA KA F E + T+ D G
Sbjct: 809 QSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPVDETIKKTY-DYVAGK 867
Query: 376 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF--EIV---KPGKKFKVGAELVFRVLG 430
+ V + + V V + + + EIV KP K+F G ++ RVLG
Sbjct: 868 ITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPNKPLKRFHKGDKIRVRVLG 927
Query: 431 VKSKR----ITVTHK-------KTLVKSKLAILSSYAEATDRLI----THGWITKIEKHG 475
+ R + ++H+ + V+ + + ++ + G++ + K
Sbjct: 928 IHDSRNHKFLPISHRVSPKQFLELSVRPSILNMEPFSMKEPQFKKGDEVTGFVNNVSKEC 987
Query: 476 CFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSFMMK 532
+V V G P +L D E +S+ + +G+ +KC +++ A I LS +
Sbjct: 988 VWVSLTPSVNGRIPILDLTTDVK-ELNSLQKHFFLGKAIKCYVVN---AEDSITLS-AIG 1042
Query: 533 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 592
P + E +L LV V +V A++ G+ G + + D +
Sbjct: 1043 PLQGFE-NLTPGSRLVGKVTNVNEAGAILQL---PGHMSGRVSRIDMFDDYD-------- 1090
Query: 593 IKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV------ 639
I P +F + +L +D + + LSA+ S Q P + NSV
Sbjct: 1091 ILPETKFTRNNLVGVCVLSVDVPNRKVALSARNS---RTQSQPVEIKDKEINSVDDLKIG 1147
Query: 640 --VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
G+VCN+ G FV L + D D ++V Q V+ +I+ ++++
Sbjct: 1148 DICRGFVCNVANQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDND 1207
Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
+ RI +SLKQS D+S + + F +GS ++G V
Sbjct: 1208 SKRIEMSLKQSKIK--DSSEITKTF----------------------ADIAVGSNLDGTV 1243
Query: 758 HESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVD 810
+ D+GV++ + ++ G ++A A V SG ++A +LDV +R +
Sbjct: 1244 VKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIA 1303
Query: 811 LSLKTVFI 818
L LK+ +
Sbjct: 1304 LGLKSSYF 1311
>sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RRP5 PE=1 SV=1
Length = 1729
Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust.
Identities = 380/1314 (28%), Positives = 630/1314 (47%), Gaps = 193/1314 (14%)
Query: 565 IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 623
I G K ++P H++D + K G + ++ N N+ ++ K SL+N
Sbjct: 530 IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587
Query: 624 AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677
+LP +A +I N + GC + F G L+GF P S+ +
Sbjct: 588 DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647
Query: 678 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 737
+ +GQ+V +LDV+++ RI + C K++ Q+++
Sbjct: 648 EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686
Query: 738 GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 791
+ +E + G ++I V E V+V + + G I L+ + +E
Sbjct: 687 DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741
Query: 792 -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 846
G+ + ++D R+ ++SLK+ I ++A ++ +KD+ +H
Sbjct: 742 KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798
Query: 847 QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 901
+ +I + V N ++ L LP Y +S K F QSV TV
Sbjct: 799 AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847
Query: 902 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 951
L + + LL LKA S E K +GS+V+A+I +K
Sbjct: 848 LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907
Query: 952 LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 1002
+L + HGR+ I EV D + + SN+K + +II KS+K
Sbjct: 908 NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967
Query: 1003 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1060
+ K+ + ELS+KPS L E+ +K L E ++IGQ +TG+V LTIS
Sbjct: 968 ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024
Query: 1061 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
LKA++ +LD A S E + F +G A+ V SI++E F + I
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076
Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
VDI NM T I GD + GR+ KI +++ +G + G + F ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122
Query: 1180 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1235
+ E D ++ + VL + + +ELSLR + S S
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRPATAKTRSIKSH--- 1171
Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
EDL IV G VKNV KG F+ LSRK++A V +S LSD Y++ +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218
Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1348
K + + V G+V++ + S R+ +TL+ +SEIN S++ GD+
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269
Query: 1349 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1407
G IK V +G+F+ ++NT N+ GL H++E+++ +++ ++ G++VK +LK + EK+
Sbjct: 1270 GTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329
Query: 1408 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1467
+ISL +K+S+F +A +++S + ++++ + ++ ++ D D ES+ G
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTVDQLEKEDEDEVMADA--GFNDSDSESDIGD 1384
Query: 1468 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1524
+ D +P+ +G+S + G A +D+ +++
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429
Query: 1525 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1575
E ++ + + +E +++ AP + +FERL+ +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489
Query: 1576 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1635
++EKAR +AERAL+TIN REE EKLNIW+A NLEN +G EE + +VF RA QY D
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547
Query: 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1693
+H LLG+YE +E+ A EL KKF +W+ L+ +E + ++
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607
Query: 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1753
AL +LP+ HI+ + + A LEF G +RGRS+FEG++++ PKR DLW++Y+DQE++ D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKD 1667
Query: 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
+ LFER I+ + K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 287/1267 (22%), Positives = 544/1267 (42%), Gaps = 178/1267 (14%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------------------LARAADAL 42
+ + G L G ++ + ++DL I G+ G + DA
Sbjct: 114 KTLKNGSSLLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAA 173
Query: 43 D----PILDNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGK 84
D + D E E+++D N LP + FH+GQ + C V++ L+ K+ K
Sbjct: 174 DEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKK 233
Query: 85 RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 144
++I L++ S + + V+ + A VKSIEDHG L GLP FTGF+ + +
Sbjct: 234 KRIELTIEPSSVNIYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNF 292
Query: 145 SGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 203
+ PG + G + + DR+ + +++D S K + SID ++PG +V
Sbjct: 293 EKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLL 344
Query: 204 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 263
+SI +NG+ +G V++ HL+ TF + K+ + + RI+
Sbjct: 345 CESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFVIGSSIRCRII---------- 393
Query: 264 LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------S 310
L N+ S KV + + +++++ L + + P+ S
Sbjct: 394 -----ACLENK---SGDKVLILSNLPHILKLEDALRSTEGLDAFPIGYTFESCSIKGRDS 445
Query: 311 TPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 365
Y+ + D V V ++E S R+LG+ ++ + +
Sbjct: 446 EYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKY 501
Query: 366 FTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 423
+D+ G ++ ++ +V S G ++ F G KA P H+S+ +V P +KFK+G++
Sbjct: 502 LRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSK 561
Query: 424 LVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHG 475
+ RV+ V S+ + VT KK+LV ++L ++S+Y A + T I + +G
Sbjct: 562 VKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATIQVFKPNG 621
Query: 476 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
C + F+ G+ GF P SE+ P +GQ V +++ RRI + + +
Sbjct: 622 CIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQ 681
Query: 536 VSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVM 589
++ +++V ++++ V T ++V+V + G +G I HL+D +E
Sbjct: 682 AAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQ 740
Query: 590 KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGY 643
++ G E L++ D + +S K SLI A++ LP D ++ + +H Y
Sbjct: 741 LKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAY 800
Query: 644 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703
+ +I + G FV F G+ G S AVD + D+SK +Y+ QSV +L + + + L
Sbjct: 801 IKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLL 860
Query: 704 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESN 761
SLK +E+ + S +K + IGS+++ K+ + N
Sbjct: 861 SLKAPKVKEEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKSVKKN 908
Query: 762 DFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVD 810
V+++ H D Y IT + + + VI+ I+ DV K+ + +
Sbjct: 909 QLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLP 967
Query: 811 LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYN 869
++ K + + + K+ ++ +++ + Q + V N+L L++ P
Sbjct: 968 ITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLK 1027
Query: 870 HSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSK 928
I ++D N F + N +SV AL ++ R + AI ++ +
Sbjct: 1028 ARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN- 1081
Query: 929 RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 988
S+ VG + + +I + L G G IT+ +D S ++ F + KI
Sbjct: 1082 ----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KI 1136
Query: 989 GQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1046
+ +++ + NK ELS++P+ I S D+ G+ V G V
Sbjct: 1137 NNVIPTTVLSVDEQNKK-------IELSLRPATAKTRSIKS-----HEDLKQGEIVDGIV 1184
Query: 1047 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1106
V+++ + +SR ++A F+ S S L+E+++ + + V G V++ +++ + +
Sbjct: 1185 KNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-IS 1241
Query: 1107 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRV 1164
L LR + K + +D I GD+ G I + G+ V++ ++ G
Sbjct: 1242 LTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKSVTD--FGVFVKLDNTVNVTGLA 1294
Query: 1165 HFTELKN 1171
H TE+ +
Sbjct: 1295 HITEIAD 1301
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 13/212 (6%)
Query: 507 VGQVVKCRIMSSIPASRRINLSFMMKPTRV----SEDDLVKLGSLVSGVVDVVTPNAVVV 562
+ V+ ++S +++I LS + S +DL K G +V G+V V + V
Sbjct: 1136 INNVIPTTVLSVDEQNKKIELSLRPATAKTRSIKSHEDL-KQGEIVDGIVKNVNDKGIFV 1194
Query: 563 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP-GYEFDQLLVLDNESSNLLLSAKYSLI 621
Y+ K + +P L+D + K KP Y +++ D E S + L+ + S I
Sbjct: 1195 YLSRK--VEAFVPVSKLSDS--YLKEWKKFYKPMQYVLGKVVTCD-EDSRISLTLRESEI 1249
Query: 622 NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSK 679
N ++ S I V G + ++ + G FV+ +TG A ++ D + DLS
Sbjct: 1250 NGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSA 1309
Query: 680 TYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
+ VG V++ +L N E +I+LSLK S S
Sbjct: 1310 LFGVGDRVKAIVLKTNPEKKQISLSLKASHFS 1341
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 136/330 (41%), Gaps = 37/330 (11%)
Query: 101 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 153
SLE + G LT +V + + L P + +LA+N V P G
Sbjct: 996 SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054
Query: 154 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 213
LQ V SIDR V + K I++ + G + RV I E V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104
Query: 214 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 269
L TG I N F T K + K+N +L VD ++ + L+L P
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAF--EDKINNVIPTTVLSVDEQNKKIELSLRPA 1161
Query: 270 LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 327
R+ SH +K G+I D D+G+ + L A+V +S +++ +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216
Query: 328 LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 384
+K YK V +++ + + L+ S G ++ T+SD+K G V +G + +V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSV 1275
Query: 385 DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
FG V+ V + L H++E KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304
>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1
Length = 1874
Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust.
Identities = 395/1398 (28%), Positives = 652/1398 (46%), Gaps = 159/1398 (11%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
+++ GM++ G V EVNE +L I LP GL+G + + D + NE A E+ L
Sbjct: 78 ESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQDLV 137
Query: 58 -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
LP +F G LV C+V LD K K+ + LSL + + LS ET++ GM+LT V
Sbjct: 138 GLPELFSPGMLVRCVVSSLDTTKG--SKKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVS 195
Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
S+EDHGY++ G+ FLP E N G +K G L ++ + +R VV L
Sbjct: 196 SLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGVVTL 255
Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
S VS + + + +++ L+PG++V +VQ + G+ L FL++F+G VD HL
Sbjct: 256 SIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDP 315
Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
T + N ++V A +L V P +RAV L+L P L P + + ++G + D
Sbjct: 316 KKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAVLDD 370
Query: 289 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
V G + T AY + ++ + + +K G+ + RI+ + +
Sbjct: 371 VPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDYSQM 427
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+ LA L+ S E + D+KPG +VKGKV+ + G +V+ ++ L P H+++
Sbjct: 428 DELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD 487
Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
I P KK+ VG E+ RVL K+K++ +T KKTLV+SKL ++ Y +A L THG
Sbjct: 488 ILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHG 547
Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
+I +++ +GC V+FYN VQG PR EL + +P S+++ GQVVK +++ P+ R+
Sbjct: 548 FILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERML 607
Query: 527 LSFMM--KPTRVSEDDLVKLGSLVSG--VVDV----VTPNAVVVYVIAKGYSKGTIPTEH 578
LSF + P + E K VS + DV T + + V V+ G +PT H
Sbjct: 608 LSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIP-GFLPTAH 666
Query: 579 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 636
L+DH+ + ++ ++ G ++L L +LL K +L+++ + Q P S IHP
Sbjct: 667 LSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEIHP 726
Query: 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 696
++ G+V NI + G FV+F L+G AP++ D S + GQ+V + + +V+
Sbjct: 727 GMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDE 786
Query: 697 ETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSV 752
E R+ LSL+ S C+ D + LEE+ + + S L + + G
Sbjct: 787 EKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMA 846
Query: 753 IEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLV 809
++ +V E + G V+ F E V G + + + AG +E G +A IL+V + V
Sbjct: 847 LDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKLEV 904
Query: 810 DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
+SL + NR+A+K K+ + + AIV+ ++E++ V SL E
Sbjct: 905 HVSLCHDLV--------NRKAKKLKKGSD----------LQAIVQHLEESFAVASLVETG 946
Query: 870 HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 928
H ++ S N T +F ++ GQ V T+ T LLL ++ + T
Sbjct: 947 HLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVTG--LLLAIEGPAAKRTMRQT 1004
Query: 929 RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 969
R KK + +G +V + IKP + + G G IH +
Sbjct: 1005 RKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHAS 1064
Query: 970 EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKP 1017
+ DD V + + K+G+ VTAR+I DMK FL ELS++P
Sbjct: 1065 HILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRP 1120
Query: 1018 SML------TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFIL 1069
S L T++ L + GQ VT ++ Y + +W + I+ ++ ++ +L
Sbjct: 1121 SELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKKYNMVKKWLEVEIAPDIRGRIPLL 1180
Query: 1070 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK--LLRLVLRPFQDGISDKTVDISNDN 1127
++ L+ ++F IG+A+ V+ + K L ++ P +
Sbjct: 1181 LTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHK-------------- 1226
Query: 1128 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1187
+ +G++ GR+ K+ + GL V +GRV + VSD S F
Sbjct: 1227 ----LKKGEVAMGRVVKV-TPKEGLTVSFP---FGRVGRVSM--FHVSDSYSETHLEDFV 1276
Query: 1188 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1247
P Q V+C VL + V + LSLRS S TN S D +
Sbjct: 1277 P------QQVVRCYVLSAATPV-----LTLSLRS-----SRTNPETKSKITDP---EINS 1317
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLV 1304
IEDL +++G+VK+V G + L + ++S + +P ++ P GKL+
Sbjct: 1318 IEDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLL 1377
Query: 1305 AGRVLSVEPLSKRVEVTL 1322
+VL + VE++L
Sbjct: 1378 TAKVLRLNHQESLVELSL 1395
Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/328 (44%), Positives = 220/328 (67%), Gaps = 6/328 (1%)
Query: 1484 EVNLDDEQPDMDNGISQNQGHTDEA--KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1541
+V LD P + + DE + +K ++ ++ EK++ E+E+ EE L++
Sbjct: 1542 DVGLDTLTPALPPHGDSSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRIEEALMDP 1601
Query: 1542 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1600
P + ++F+RLV SSP+SS +W++YMAF L ++EKAR++AERAL+TI+ REE EKL
Sbjct: 1602 GRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL 1661
Query: 1601 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1660
N+WVA NLEN YG+ +E++ KVF+RA+QY +P KV L L +Y ++E+ + A EL +
Sbjct: 1662 NVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNR 1719
Query: 1661 MIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1719
M+K+F+ VW++ LL++ + E V+QRAL LP+ +H+ I++ A LEF+ G
Sbjct: 1720 MLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGD 1779
Query: 1720 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1779
A+R R++FE LS YPKRTD+WS+Y+D I+ G R +FER I LSL PK+MKF FK
Sbjct: 1780 AERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFFK 1839
Query: 1780 KYLEYEKSVGEEERIEYVKQKAMEYVES 1807
+YL+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1840 RYLDYEKQHGSEKDVQAVKAKALEYVEA 1867
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)
Query: 1250 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1309
D+ P +V+G V + G + + +++ V +L+D +++PEK++ +G V RVL
Sbjct: 449 DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508
Query: 1310 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1366
+P +K++ +TLK +T +S++ ++ + G G I RV+ YG + N
Sbjct: 509 LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 563
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
++ GL ELS ++V + E+++ G+ VKV +L + K R+ L +
Sbjct: 564 DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 611
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 131/614 (21%), Positives = 237/614 (38%), Gaps = 122/614 (19%)
Query: 784 LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 843
L+ T++ G ++ + + LVD+ + R ++AQ+ R++ L
Sbjct: 179 LSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGA-----RAFLPLQKAQEYIRQKNKGAKL 233
Query: 844 GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 903
V Q +N ++E VK + V++L SIG++ VS A +
Sbjct: 234 KVGQYLNCLIEEVKGSRGVVTL-----SIGHSEVS-------------------AAIATE 269
Query: 904 PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 963
S T LL G +V+A++ ++ PL L LKF F
Sbjct: 270 EQSWTLNSLL------------------------PGLVVKAQVQKVTPLGLTLKFLSFFS 305
Query: 964 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1023
G + ++ K+ FSN Q V A ++ ++ LS++P L
Sbjct: 306 GLVDFMHLDPKKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPG 353
Query: 1024 EIGSKLLFEECDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQE 1080
++LL ++ + V G+ + L T++ + L ++P
Sbjct: 354 RPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA--- 410
Query: 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1140
F G ++ ++ +L L LR I + +D I G +V G
Sbjct: 411 ----FKPGNTHKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKG 458
Query: 1141 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1200
++ I G+VV++G + G V L +I + +P Y G DE VKC
Sbjct: 459 KVLTIKPH--GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVG--------DE---VKC 505
Query: 1201 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1260
+VL + ++L+ +L V++ + +D P + G+
Sbjct: 506 RVLLCDPKAKKLM---MTLKKTL--------------VESKLPAITCYDDAKPGLQTHGF 548
Query: 1261 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1320
+ V GC + + V LS YV PE F G++V VL+ EP +R+ +
Sbjct: 549 ILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLL 608
Query: 1321 TLK-TSDSRT----ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
+ + SD + SQ + +S + D+ + +++ + GL + + N+ G +
Sbjct: 609 SFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKV--LEKTKD-GLKVAVLPHNIPGFLPTA 665
Query: 1376 ELSEDHVDNIETIY 1389
LS DHV N +Y
Sbjct: 666 HLS-DHVTNGPLLY 678
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 169/402 (42%), Gaps = 69/402 (17%)
Query: 939 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 998
G+LV+ ++ IKP + +K G G + + D +++N + +G V R++
Sbjct: 453 GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508
Query: 999 KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1054
L + K M+T+ + + SKL C D G + G++ +V +
Sbjct: 509 -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 557
Query: 1055 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--NKEKKLL--RLV 1108
++ ++ + L + Y P + F+ G+ V VL+ +KE+ LL RL+
Sbjct: 558 IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613
Query: 1109 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS--KILSGV-GGLVVQIGPH-LYGRV 1164
P Q+G Q+ + + G+++ K+L GL V + PH + G +
Sbjct: 614 SDPKQEG-----------EGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFL 662
Query: 1165 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1224
L + + PL + L D V C L +S R + +L S+++
Sbjct: 663 PTAHLSDHVTNGPL------LYHWLQTGDTLHRVLC--LSVSEE-RVLLCRKPALVSAVE 713
Query: 1225 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1284
G G++ + ++ P M++ G+VKN+ G F+ L +
Sbjct: 714 G----------------GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKA 757
Query: 1285 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
LSD +V S F G+ V +V +V+ +R+ ++L+ SD
Sbjct: 758 ILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 799
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
+ S +H G ++IG +K ++ YG+F+ + L GL + LS+ V + + G+ V
Sbjct: 719 KSFSEIHPGMLLIGFVKNIKDYGVFVQFP-SGLSGLAPKAILSDKFVTSTSDHFVEGQTV 777
Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
K+ VD+EK+R+ L ++ S
Sbjct: 778 VAKVTNVDEEKQRMLLSLRLS 798
>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2
Length = 1862
Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust.
Identities = 392/1411 (27%), Positives = 659/1411 (46%), Gaps = 164/1411 (11%)
Query: 4 QNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL---- 57
+++ GM++ G V EV+E +LV+ LP GL+G + + D NE A E+ L
Sbjct: 78 ESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLL 137
Query: 58 -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 116
LP +F G LV C+V LD E GK+ + LS+ + K LS + ++ GM+LT V
Sbjct: 138 RLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVS 195
Query: 117 SIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYL 171
S+EDHGY++ G+ FL E N G K G L VV + VV L
Sbjct: 196 SLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSL 255
Query: 172 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 231
S + VS + + +++ L+PG++V +VQ + + G+ L+FLT+F G VD HL+
Sbjct: 256 SVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE- 314
Query: 232 TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQ 288
Y+ ++ V A IL V P +R V L+L P LH P + + ++G + D
Sbjct: 315 ----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDD 370
Query: 289 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348
V + G + + + AY +S +++ + + +K GS + RI+ + +
Sbjct: 371 VPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQM 427
Query: 349 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 408
+ LA L+ S + D+K G VVKG V+A+ FG +V+ +K L P H+++
Sbjct: 428 DELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD 487
Query: 409 FEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 466
+ P KK+ G E+ RVL ++K++ +T KKTLV SKL++++ Y A L THG
Sbjct: 488 IMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHG 547
Query: 467 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 526
I +++ +GC V+FYN VQG P+ EL +P ++++ GQVVK ++S P+ R+
Sbjct: 548 VIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERML 607
Query: 527 LSF-MMKPTRVSEDDL---------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 576
LSF ++ +R + + V++G LV V T + V ++ + +PT
Sbjct: 608 LSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPT 666
Query: 577 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 634
HL+DH + ++ ++ G ++L L ++LL K +L+++ + Q P S I
Sbjct: 667 PHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEI 726
Query: 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694
P ++ G+V I E G FV+F L+G +P++ D S+ + GQ+V + + +V
Sbjct: 727 QPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNV 786
Query: 695 NSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIG 750
+ R+ LSL+ S CS S SF+ LEE + S + ++ + G
Sbjct: 787 DESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPG 846
Query: 751 SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 809
V++ VHE D VV S + D+ + + AG VE G + +L V + V
Sbjct: 847 MVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEV 906
Query: 810 DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 869
+SL ++R K ++ R++S+ HQ IV+ ++E++ V SL E
Sbjct: 907 HVSLHQDLVNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETG 948
Query: 870 HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS-------- 920
H + ++ +S N T F ++ GQ V T+ T L+L ++ +
Sbjct: 949 HLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTRMPV 1006
Query: 921 --ETETSSSK--------------------RAKKKSSYDVGSLVQAEITEIKPLELRLKF 958
++ET K ++KK+ S +G V I +K + +
Sbjct: 1007 QRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSLAIGDKVTGTIKAVKATHVVVTL 1066
Query: 959 GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF--- 1009
GF G IH + + DD V + + K G+ VTAR+I K++K P F
Sbjct: 1067 ADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLT 1125
Query: 1010 LWELSIKPSMLTVS----EIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHL 1062
+ ELS++PS L S S+ E+ GQ VT + Y V +W + I +
Sbjct: 1126 ILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDI 1185
Query: 1063 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTV 1121
+ ++ +L ++ L+ ++F +G+A+ V+ + + L L ++ P++
Sbjct: 1186 RGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR-------- 1237
Query: 1122 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1181
+ EG++ GR+ K++ GL V G+V L + Y
Sbjct: 1238 ----------LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSD--------SY 1278
Query: 1182 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1241
E PL + + V+C +L + V + LSLRSS + N ++ P
Sbjct: 1279 SEA---PLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR------IEDP 1324
Query: 1242 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE---- 1297
+ IED+ +++GYVK V I L + S++S+ PEKE
Sbjct: 1325 --EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNG 1380
Query: 1298 -FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1327
P GKLV +VL V P+ +E++L SD+
Sbjct: 1381 CLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411
Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)
Query: 1525 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1583
++ E+E+ EE L++ P + D+F+RLV SSPNSS +W++YMAF L ++EKAR++
Sbjct: 1573 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1632
Query: 1584 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1643
AERAL+TI+ REE EKLN+WVA NLEN YG+ +E++ KVF+RA+QY +P KV L L
Sbjct: 1633 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1690
Query: 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1702
+Y ++E+ K A EL +M+K+F+ VW++ +L + Q G V+QRAL LP +
Sbjct: 1691 IYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1750
Query: 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762
H+ I + A LEF+ G +R +++FE LS YPKRTD+WS+Y+D I+ G +R +FE
Sbjct: 1751 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1810
Query: 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807
R I LSL PK+MKF FK+YL+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1811 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1855
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)
Query: 1089 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1143
+ V +L ++ +++RL LRP IS + + + + G G I
Sbjct: 325 QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384
Query: 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
++ GV Y RV +SD ++ F P S + KC+++
Sbjct: 385 RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422
Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
+ S+ LSLR S+ + P + D+ +V+G V
Sbjct: 423 DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462
Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323
+ G + + ++ V +L+D +++PEK++ G V RVL +P +K++ +TLK
Sbjct: 463 IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522
Query: 1324 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1383
+ T+ S I G G I RV+ YG + N ++ GL ELS H+
Sbjct: 523 KTLV-TSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580
Query: 1384 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ ET++ G+ VKV +L + K R+ L +
Sbjct: 581 DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 31/158 (19%)
Query: 79 KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF--GLPSFT--- 133
K +I KRK S++ ++ LSLE++ EGM + VK + + ++ GL F
Sbjct: 56 KLKIEKRKSIKSIKEK--FEILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVT 113
Query: 134 ----GFLPRNN--LAENSGID--------VKPGLLLQGVVRSIDRT---RKVVYLSSDPD 176
+ + N +A+ ++ PG+L++ VV S+D T +K V LS +P
Sbjct: 114 EVCDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLDVTESGKKSVKLSVNPK 173
Query: 177 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 214
V+K +S D L PGM+++ V S+ ++G ++
Sbjct: 174 RVNKV-------LSADALRPGMLLTGTVSSLEDHGYLV 204
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
+LS + G ++IG +K ++ YG+F+ + L GL + +S+ V + G+ V
Sbjct: 721 KSLSEIQPGMLLIGFVKCIKEYGVFVQFP-SGLSGLSPKTIMSDKFVTTPSEHFVEGQTV 779
Query: 1396 KVKILKVDKEKRRISLGMKSS 1416
K+ VD+ K+R+ L ++ S
Sbjct: 780 VAKVTNVDESKQRMLLSLRLS 800
>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3
SV=1
Length = 481
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)
Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
++ + V++IGS F D +I G V G + KVD + LL I +
Sbjct: 5 TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64
Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
A+ + +P+E+ +G V VL+ KE K RL+L + +
Sbjct: 65 ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111
Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
+ ++ + + V G + +++ G GL++ IG + E++ + P G +
Sbjct: 112 AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168
Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
++ K++E+ + +V LS R+ L+ S S+
Sbjct: 169 --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202
Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
+ +L I +G V ++ + G F+ L +D V +S LS +++ P + +G
Sbjct: 203 ----LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257
Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
V VL V+ +RV ++LK + + + + H +G IV G++ ++ +G F+
Sbjct: 258 VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312
Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+E + GL H+SEL+E HV+ + + G+ VK++ +D E+RRISL +K +
Sbjct: 313 VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)
Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
G +V+G ++ VD ++ + + P +S V P + VG E+ VL +
Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95
Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
K R+ ++ K+ + + + E + + G + ++ K G + G++GF P S
Sbjct: 96 KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151
Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
E+ +P ++G+ ++ +I+ +++ SRR L R + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207
Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
G++ GVV + V + G G + L+ H++H + V++ G E +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261
Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
+L +D + + LS K + + + + H +V G V ++ G FVR +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317
Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
G S+ + + VG ++D++ E RI+LSLKQ+ T E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371
Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
F K M S G+ + +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)
Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
D I G I K+++ + +G P EL + +P+ + VG V+ +++
Sbjct: 34 NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93
Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
R+ LS + + + L + V G V V +++ + +G+ ++
Sbjct: 94 EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152
Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
+E V G E + +++ LD +N++LS + L + ++ S+ ++
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNN 205
Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
+ ++ G V +I+ G FV LG + G S+ S+ VG V +LD
Sbjct: 206 LQKGTIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264
Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
V+ + R++LSLK + F + H IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297
Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
GKV + FG V EE + G + +LA VE G ++D+
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355
Query: 807 RLVDLSLK 814
R + LSLK
Sbjct: 356 RRISLSLK 363
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 115/267 (43%), Gaps = 45/267 (16%)
Query: 1067 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1119
ILD + P+ L E +R + +IGK + ++ ++K + + L R + + +
Sbjct: 138 LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 197
Query: 1120 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1179
+N+Q +G I G +S I++ G V +G + G VH +EL + P
Sbjct: 198 VRSEFLNNLQ----KGTIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250
Query: 1180 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1239
G DE V +VL++ V LSL+++ +
Sbjct: 251 VVQVG--------DE---VTVEVLDVDMDRE---RVSLSLKATQE--------------- 281
Query: 1240 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1299
P +H + + IV G V + G F+ + ++ V +S L++ +VE P++
Sbjct: 282 DPWRHFARTHAI--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVA 339
Query: 1300 IGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
+G +V+ ++ +R+ ++LK ++
Sbjct: 340 VGDDAMVKVIDIDLERRRISLSLKQAN 366
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 431
G +V GKV + FGA V+ G++ L + ++E + P + VG + + +V+ +
Sbjct: 294 GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDL 353
Query: 432 KSKRITVTHKKT-------LVKSKLAILSSYAEATDRLITHG-------WITKIEKH 474
+ +RI+++ K+ +K + SY E + + G W+ EK
Sbjct: 354 ERRRISLSLKQANEDYTEEFDPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGFEKQ 410
>sp|O84100|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=rpsA PE=3 SV=1
Length = 569
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)
Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
++IG+R G V + + L + + L I D ++ PSE+ E + +
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271
Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
+LS++KEK + L L+ P++D ++ G V G+I K+L
Sbjct: 272 --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316
Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
G ++I + G +H +E+ KNI DP ++G V+ VL
Sbjct: 317 PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361
Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
I + ++SL G+ T + P ++E E + V +KN
Sbjct: 362 SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401
Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
+T+ G F+ L ++ + +S++S V P + F G V +LSV+ SK++ + +
Sbjct: 402 LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461
Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
K + E+ VG + G + ++ ++G F+ ++N + GL HVSELSE
Sbjct: 462 KQLTPNPWDEIEVM----FPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516
Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1434
IE + G+KV K++K+D + +++SL +K + + D + EE SD
Sbjct: 517 AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)
Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
EG IV G+I++ + G GL+V IG + P S D + L Y
Sbjct: 133 EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175
Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
G+ + K+L+I+ R +V +S R L+ + ++L IE ++
Sbjct: 176 VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219
Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
+G VKN+T G F+ L +D + +++++ + P + + + + +LSV+
Sbjct: 220 GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278
Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
RV + LK + E G V G+I ++ YG FI IE + GL H
Sbjct: 279 EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333
Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
VSE+S ++ VD E + + G++V+V +L + K++ +ISLG+K + N DN++
Sbjct: 334 VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)
Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 394
G V V +L + EG + LK + G+ V ++ + ++GA V+
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412
Query: 395 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 451
G++ L + MS + V P + FK G + +L V +SK+IT+ K+ I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472
Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
+ +D G +TKI G FV NG++G SEL P + + +G V
Sbjct: 473 EVMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529
Query: 512 KCRIMSSIPASRRINLSF 529
+++ P ++++LS
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 425
S+V PG ++KG V+ + +V G+K+ +P MSEF + + VGAE+ +
Sbjct: 47 SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101
Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
+ + K + K T + IL+ E + I G IT+ K G V G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156
Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 539
F P S++ D + +VG+V + +I+ I RR ++ +++ R+S+
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213
Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
+ + +G G+V +T V ++ G T+ + H + M E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264
Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
+Q +L +D E + L K N + + P V G + ++ G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321
Query: 654 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
+ + G S+ + D ++ G V +L + + G+I+L LKQ+ +
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381
Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
D +EEK + IG + ++ ++G V E
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414
Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
H +I + G+ ++A IL V K + + L +K + + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 81/378 (21%), Positives = 136/378 (35%), Gaps = 66/378 (17%)
Query: 642 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 701
G V NI + G F+ G + G + + S+ + Q + IL V+ E GR+
Sbjct: 225 GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRV 283
Query: 702 TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 761
L LKQ +EH E+ E K + G + GK+ +
Sbjct: 284 ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRVRGKIVKLL 316
Query: 762 DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 815
+G + EE H ++ + V G ++ +L + K E + L LK
Sbjct: 317 PYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLK- 375
Query: 816 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 875
+ E +G+ T I + V P I +
Sbjct: 376 ------------QTKHNPWDNIEEKYPIGLRVTAE-IKNLTNYGAFVELEPGIEGLIHIS 422
Query: 876 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSS---TAGRLLLLLKAISETETSSSKRAKK 932
+S P + F G +V A ++++ S T G L E E
Sbjct: 423 DMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEVM------- 475
Query: 933 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 992
+ VGS + +T+I ++ G G IH++E+++ +E++ S IG V
Sbjct: 476 ---FPVGSDISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLS---IGDKV 529
Query: 993 TARIIAKSNKPDMKKSFL 1010
+A++I PD KK L
Sbjct: 530 SAKVIKLD--PDHKKVSL 545
>sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN) GN=rpsA
PE=3 SV=2
Length = 481
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)
Query: 1014 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1063
++ + V+++GS F D +I G V G + KVD + LL I +
Sbjct: 5 AVPSPQIAVNDVGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64
Query: 1064 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1123
A+ + +P+E+ +G V VL+ KE K RL+L + +
Sbjct: 65 ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111
Query: 1124 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1183
+ ++ + + V G + +++ G GL++ IG + E++ + P G +
Sbjct: 112 AWGTIEALKEKDEAVKGIVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168
Query: 1184 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
++ K++E+ + +V LS R+ L+ S S+
Sbjct: 169 --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202
Query: 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
+ L I +G V ++ + G F+ L +D V +S LS +++ P + +G
Sbjct: 203 ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGNE 257
Query: 1304 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1362
V VL V+ +RV ++LK + + + + H +G IV G++ ++ +G F+
Sbjct: 258 VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312
Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+E + GL H+SEL+E HV+ + + G+ VK++ +D E+RRISL +K +
Sbjct: 313 VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/381 (21%), Positives = 150/381 (39%), Gaps = 53/381 (13%)
Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
D I G I K+++ + +G P EL + +P+ + VG V+ +++
Sbjct: 34 NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93
Query: 519 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 575
R+ LS + + + L + V G+V V +++ + +G+ ++
Sbjct: 94 EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGLILDIGLRGFLPASL- 152
Query: 576 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 633
+E V G E + +++ LD +N++LS + L + ++ S+ +
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205
Query: 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693
+ ++ G V +I+ G FV LG + G S+ S+ VG V +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLD 264
Query: 694 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 753
V+ + R++LSLK + F + H IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297
Query: 754 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 806
GKV + FG V EE + G + +LA VE G ++D+
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355
Query: 807 RLVDLSLKTV---FIDRFREA 824
R + LSLK +I+ F A
Sbjct: 356 RRISLSLKQANEDYIEEFDPA 376
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 83/397 (20%), Positives = 166/397 (41%), Gaps = 48/397 (12%)
Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
G +V+G ++ VD ++ + + P +S V P + VG E+ VL +
Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95
Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
K R+ ++ K+ + + + E + + G + ++ K G + G++GF P S
Sbjct: 96 KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGIVIEVVKGGLILDI--GLRGFLPAS 151
Query: 492 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
E+ +P ++G+ ++ +I+ +++ SRR L R + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207
Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
G++ GVV + V + G G + L+ H++H + V++ G E +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGNEVTVE 261
Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 660
+L +D + + LS K + + + + H +V G V ++ G FVR +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317
Query: 661 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 720
G S+ + + VG ++D++ E RI+LSLKQ+ + +++E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA-----NEDYIEE 372
Query: 721 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 747
K M S G+ + +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDPDSNEWLEGF 407
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 1239 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1298
+ P +H + + IV G V + G F+ + ++ V +S L++ +VE P++
Sbjct: 281 EDPWRHFARTHAI--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVV 338
Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSD 1326
+G +V+ ++ +R+ ++LK ++
Sbjct: 339 AVGDDAMVKVIDIDLERRRISLSLKQAN 366
>sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rpsA PE=3 SV=1
Length = 392
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+E L+ +++G V +T+ G F+ + +D V +S LS +V+SPE +G+ V +
Sbjct: 188 LESLNAGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVDSPEDVVSVGQEVDVK 246
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
V SVE ++R+ +++K D+ I H D++ G++ R+ ++G F+ I
Sbjct: 247 VKSVEKDAERISLSIK--DTLPTPFESIK--GQFHEDDVIEGKVVRLANFGAFVEIA-PG 301
Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
+ GL H+SE++ +H+ G++V VKIL +D+E RISL +K++ K D
Sbjct: 302 VQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKED 355
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 93/170 (54%), Gaps = 10/170 (5%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
E L + I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNDEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
+V ++P + RV ++ K + + + L +L+ GD++ G++ R+ ++G F+ I
Sbjct: 157 KVEELDPENNRVILSRKAVEQAENDVKKASLLESLNAGDVIKGKVARLTNFGAFVDIGGV 216
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ GL HVSELS +HVD+ E + G++V VK+ V+K+ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDT 264
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 119/261 (45%), Gaps = 26/261 (9%)
Query: 288 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 340
++KV V +G GL++D+ P++ +ST S + +R K+E+ E + V
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168
Query: 341 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
IL + +E + KAS E L G V+KGKV + +FGA V GGV L
Sbjct: 169 -ILSRKAVEQAENDVKKASLLESL-------NAGDVIKGKVARLTNFGAFVDI-GGVDGL 219
Query: 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 458
+ +S + P VG E+ +V V+ ++RI+++ K TL +I + E
Sbjct: 220 VHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHED 279
Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
+ G + ++ G FV GVQG SE+ + P GQ V +I+
Sbjct: 280 D---VIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGI 336
Query: 519 IPASRRINLSFMMKPTRVSED 539
+ RI+LS +K T ED
Sbjct: 337 DEENERISLS--IKATLPKED 355
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 150/367 (40%), Gaps = 33/367 (8%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAY 70
Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
V ++ + L K +L SY ++L I +T++ K G V G
Sbjct: 71 VTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDV--G 128
Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
+GF P S + D E S++ GQ ++ ++ P + R+ LS K +E+D+ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQAENDVKK 184
Query: 544 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
G ++ G V +T V + G G + L+ EH + V+
Sbjct: 185 ASLLESLNAGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVDSPEDVVSV 239
Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
G E D ++ ++ ++ + LS K +L + + H + V+ G V + G FV
Sbjct: 240 GQEVDVKVKSVEKDAERISLSIKDTLPTPFESI---KGQFHEDDVIEGKVVRLANFGAFV 296
Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL-----KQSC 709
+ G S+ + GQ V IL ++ E RI+LS+ K+
Sbjct: 297 EIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKEDV 356
Query: 710 CSSTDAS 716
S DA+
Sbjct: 357 VESDDAT 363
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 88/396 (22%), Positives = 162/396 (40%), Gaps = 80/396 (20%)
Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 157
+ ++EG +T V+ +ED ++H F G +P + L+ EN VK G ++
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEA 69
Query: 158 VV------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL-- 193
V R ++ + YL D + VT+ +KG + +D+
Sbjct: 70 YVTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDVGQ 129
Query: 194 --LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 251
VP ++ST + + F G ++ P N R
Sbjct: 130 RGFVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------R 167
Query: 252 ILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 311
++ + +AV N + + + GD+ + KV R+ G +DI
Sbjct: 168 VIL---SRKAVEQAEND--VKKASLLESLNAGDVI-KGKVARL-TNFGAFVDIGGVD--- 217
Query: 312 PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL--VF 366
V +S+++ E V E G V V++ + E ++ I + FE + F
Sbjct: 218 -GLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQF 276
Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
DV ++GKV+ + +FGA V+ GV+ L + ++ I PG+K + G ++
Sbjct: 277 HEDDV-----IEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNV 331
Query: 427 RVLGV--KSKRITVTHKKTL-----VKSKLAILSSY 455
++LG+ +++RI+++ K TL V+S A SY
Sbjct: 332 KILGIDEENERISLSIKATLPKEDVVESDDATTQSY 367
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 117/290 (40%), Gaps = 55/290 (18%)
Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
+K G V+G V V VVV+ I G G IP L+ H H V+K G E +
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKQGDEIEA 69
Query: 602 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 652
+ +D E+ S Y L S +QL ++ S+ + + ++ V +++ G
Sbjct: 70 YVTKIEVDEEND----SGVYIL--SKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGL 123
Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
V R GF P S D S + GQ++R + +++ E R+ LS K +
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQAE 179
Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 772
D +K ++L+S G VI+GKV +FG V
Sbjct: 180 NDV----------KKASLLES-------------LNAGDVIKGKVARLTNFGAFVDI--- 213
Query: 773 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
V G + +L+ V+S DV + VD+ +K+V D R
Sbjct: 214 GGVDGLVHVSELSHEHVDSPE-------DVVSVGQEVDVKVKSVEKDAER 256
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
++++ GD V G++++VE + + I G+ +S+LS H++N + + G++++
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEA 69
Query: 1398 KILK--VDKE---------KRRISLGMKSSYFKNDADNLQM 1427
+ K VD+E KR++ Y + DN ++
Sbjct: 70 YVTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEI 110
>sp|Q9Z8M3|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1
Length = 580
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 73/401 (18%)
Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
+SIG+ G V + + L + + L I D ++ PSE+ E + +
Sbjct: 217 ISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271
Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
+LS++KEK + L L+ P++D ++ G V G+I K+L
Sbjct: 272 --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVLGKIVKLL 316
Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
G ++I + G +H +E+ KNI DP ++G V+ VL
Sbjct: 317 PY--GAFIEIEEGIEGLIHISEMSWVKNIV-------------DPSEVVNKGDEVEAIVL 361
Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
I + ++SL G+ T + P ++E E + V +KN
Sbjct: 362 SIQKD-----EGKISL-----GLKQTERN--------PWDNIE--EKYPIGLHVNAEIKN 401
Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
+T+ G F+ L ++ + +S++S V P + F G V +LSV+ SK++ + +
Sbjct: 402 LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGV 461
Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
K S ++ E + G ++ G + ++ ++G F+ ++N + GL HVSELS+
Sbjct: 462 KQLSSNPWNEIE----AMFPAGTVISGVVTKITAFGAFVELQN-GIEGLIHVSELSDKPF 516
Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1423
IE I GE V K++K+D + +++SL +K N D
Sbjct: 517 AKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNAYD 557
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 141/296 (47%), Gaps = 43/296 (14%)
Query: 1133 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1192
EG IV G+I++ + G GL+V IG + P S D + L Y
Sbjct: 132 EEGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY 175
Query: 1193 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252
G+ + K+L+I+ R ++ +S R L+ + ++L IE +S
Sbjct: 176 -VGKVCEFKILKINVERR---NIVVSRRELLEAERISKKAEL-------------IEQIS 218
Query: 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1312
+G VKN+T G F+ L +D + +++++ + P + + + + +LSV+
Sbjct: 219 IGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVD 277
Query: 1313 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
RV + LK + E G V+G+I ++ YG FI IE + GL
Sbjct: 278 KEKGRVALGLKQKEHNPWEDIE----KKYPPGKRVLGKIVKLLPYGAFIEIEE-GIEGLI 332
Query: 1373 HVSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
H+SE+S ++ VD E + + G++V+ +L + K++ +ISLG+K + +N DN++
Sbjct: 333 HISEMSWVKNIVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTE-RNPWDNIE 386
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 431
G+ V ++ + ++GA V+ G++ L + MS + V P + FK G + +L V
Sbjct: 392 GLHVNAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVD 451
Query: 432 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
+SK+IT+ K+ I + + T + G +TKI G FV NG++G
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEAMFPAGT---VISGVVTKITAFGAFVELQNGIEGLIHV 508
Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 528
SEL P + + +G+ V +++ P ++++LS
Sbjct: 509 SELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLS 546
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 72/350 (20%), Positives = 140/350 (40%), Gaps = 32/350 (9%)
Query: 378 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 435
KG V + FG + G + L + M+ I P + ++ EL +L V + R
Sbjct: 224 KGVVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGR 282
Query: 436 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 495
+ + K+ I Y L G I K+ +G F+ G++G SE+
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPGKRVL---GKIVKLLPYGAFIEIEEGIEGLIHISEMSW 339
Query: 496 DPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 550
+PS + + G V+ ++S +I+L +K T + D ++ +G V+
Sbjct: 340 VKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTERNPWDNIEEKYPIGLHVNA 397
Query: 551 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 603
+ +T +V + +G I H+ + +K V P F + +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGNSVEAVIL 448
Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 663
+D ES + L K N ++ + +V+ G V I G FV + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI---EAMFPAGTVISGVVTKITAFGAFVELQNGIEGL 505
Query: 664 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
S+ D A + +G++V + ++ ++ + +++LS+K+ +
Sbjct: 506 IHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNA 555
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 95/477 (19%), Positives = 192/477 (40%), Gaps = 70/477 (14%)
Query: 367 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 426
+ ++++PG ++KG V+ ++ +V G+K+ +P MSEF + + +GAE+
Sbjct: 45 SDNEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLVLGAEVEV 99
Query: 427 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
+ + + ++ ++ +K + + + ++ E I G IT+ K G V G+
Sbjct: 100 YLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GM 155
Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED--- 539
+ F P S++ D + +VG+V + +I+ R I +S +++ R+S+
Sbjct: 156 EAFLPGSQI--DNKKIKNLDDYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAEL 213
Query: 540 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
+ + +G GVV +T V ++ G T+ + H + M E
Sbjct: 214 IEQISIGEYRKGVVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264
Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
+Q +L +D E + L K N + + P V G + ++ G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVLGKIVKLLPYGAF 321
Query: 654 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
+ + G S+ + D S+ G V + +L + + G+I+L LKQ+ +
Sbjct: 322 IEIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNP 381
Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 771
D +EEK + IG + ++ ++G V E
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVNAEIKNLTNYGAFVELEPG 414
Query: 772 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
H +I + G+ ++A IL V K + + L +K + + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNE 471
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 127/586 (21%), Positives = 233/586 (39%), Gaps = 93/586 (15%)
Query: 539 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598
D+ ++ G+++ G V + + VVV V K S+G IP D E + G E
Sbjct: 46 DNEIQPGAILKGTVVDINKDFVVVDVGLK--SEGVIPMSEFIDSSEGLVL-------GAE 96
Query: 599 FDQLL-VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 657
+ L ++E ++LS + + +Q +H S+V G + ++ G V
Sbjct: 97 VEVYLDQAEDEEGKVVLSREKA--TRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI- 153
Query: 658 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 717
+ F P S+ + + +L YVG+ IL +N E I +S ++
Sbjct: 154 -GMEAFLPGSQIDNKKIKNLDD--YVGKVCEFKILKINVERRNIVVSRRE---------- 200
Query: 718 MQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------E 771
L E+I+ +EL +E IG +G V DFGV + +
Sbjct: 201 ----LLEAERIS-------KKAEL--IEQISIGEYRKGVVKNITDFGVFLDLDGIDGLLH 247
Query: 772 HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 831
+D+ H VE ++ IL V K + V L LK +E N +
Sbjct: 248 ITDMTWKRIRH--PSEMVELNQELEVIILSVDKEKGRVALGLKQ------KEHNPWEDIE 299
Query: 832 KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYNTQKF---PQ 887
KK + + + IV+++ + E I G +S+ + K P
Sbjct: 300 KKYPPGK--------RVLGKIVKLLPYGAFI----EIEEGIEGLIHISEMSWVKNIVDPS 347
Query: 888 KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEIT 947
+ G V A V+++ G++ L LK +TE + ++K Y +G V AEI
Sbjct: 348 EVVNKGDEVEAIVLSI--QKDEGKISLGLK---QTERNPWDNIEEK--YPIGLHVNAEIK 400
Query: 948 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK 1007
+ ++ G G IHI++++ K V + FK G +V A I++ +
Sbjct: 401 NLTNYGAFVELEPGIEGLIHISDMSWIKK--VSHPSELFKKGNSVEAVILSVDKES---- 454
Query: 1008 SFLWELSIKPSMLTVSEIGSKLLFE-ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1066
K L V ++ S E E G ++G V K+ A + + ++ +
Sbjct: 455 --------KKITLGVKQLSSNPWNEIEAMFPAGTVISGVVTKITAFGAFVELQNGIEGLI 506
Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1112
+ + + +P + + IG+ V+ V+ ++ + K + L ++ +
Sbjct: 507 HVSELSDKP--FAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEY 550
>sp|O06000|RS1H_BACC1 30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC
10987) GN=BCE_1625 PE=3 SV=1
Length = 382
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1295
+++ K E I L +V+G V+ +T G F+ + +D V +S +S VE P
Sbjct: 171 VELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQPS 229
Query: 1296 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1355
+ G+ V +VLSV+ ++R+ +++K + N + GDI G +KR+
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NIAGEVKAGDIREGIVKRLV 285
Query: 1356 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
++G F+ I + GL HVS+++ HV N + G++VKVK+L+V ++RISL +K
Sbjct: 286 TFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKE 344
Query: 1416 SYFKNDADNLQMSSEEESDEA 1436
++ +N+ E +D A
Sbjct: 345 AFEENNVTEDYSQYEPNADSA 365
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 1301 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1360
GK +A +++ ++ RV ++ K + +S+L GD+V G ++R+ +G F
Sbjct: 146 GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAF 205
Query: 1361 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ + + GL H+S++S + V+ + G+KVKVK+L VD + +RISL +K++
Sbjct: 206 VNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
S +K G VV+G V + FGA V GGV L + +S + +P + + G ++ +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242
Query: 429 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
L V ++RI+++ K ++ +A D I G + ++ G FV GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENIAGEVKAGD--IREGIVKRLVTFGAFVEILPGVEG 299
Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 539
S++ P+ + +GQ VK +++ A +RI+LS + V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAFEENNVTED 354
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 127/294 (43%), Gaps = 46/294 (15%)
Query: 1067 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1126
FI S E +++F + GK + ++ +++EK R++L + + +D
Sbjct: 127 FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180
Query: 1127 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1186
+ + EGD+V G + ++ G V +G + G VH +++ + V P ++GQ
Sbjct: 181 EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237
Query: 1187 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1246
VK KVL + + T LS PG
Sbjct: 238 -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266
Query: 1247 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1306
++ I +G VK + + G F+ + ++ V +S +++ +V++P + +G+ V
Sbjct: 267 IAGEVKAGDIREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
Query: 1307 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1354
+VL V KR+ +++K + + SQ E N + + + DI+ Q+K++
Sbjct: 327 KVLEVHVAEKRISLSIKEAFEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 142/367 (38%), Gaps = 52/367 (14%)
Query: 463 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 518
+ G +TK+E+ V G P SEL + S + + Q+++ +I+ +
Sbjct: 20 VVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQILELKIIKLEEND 79
Query: 519 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578
+ S+R + + + + G + V + +VV + +G+ ++ H
Sbjct: 80 LVLSKR---AVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVVDLGVRGFIPASLVEVH 136
Query: 579 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 637
+ +K ++ LD E + ++LS K + +A S +
Sbjct: 137 YVEDFTDYKGKTLAVK-------IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEG 189
Query: 638 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 697
VV G V + + G FV +G + G S+ + S+ GQ V+ +L V+++
Sbjct: 190 DVVEGTVQRLTDFGAFVN-VGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDAD 248
Query: 698 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 757
T RI+LS+K + E IA E+K G + EG V
Sbjct: 249 TQRISLSIKAAQPGPW------------ENIA---------GEVKA------GDIREGIV 281
Query: 758 HESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVD 810
FG V V G + Q+A V E G ++ +L+V AE+ +
Sbjct: 282 KRLVTFGAFVEI--LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRIS 339
Query: 811 LSLKTVF 817
LS+K F
Sbjct: 340 LSIKEAF 346
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 148/355 (41%), Gaps = 29/355 (8%)
Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
V +++ G VV G V V+ +V + P+ ++ I K ++ L
Sbjct: 9 VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQIL 68
Query: 425 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 484
+++ ++ + ++ K V ++ A + + T + + I G V GV
Sbjct: 69 ELKIIKLEENDLVLS--KRAVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124
Query: 485 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 538
+GF P S + + E + Y G+ + +I+ R+ LS + +
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182
Query: 539 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 596
+K G +V G V +T V V G G + H++ + H V + V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235
Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 653
+ ++L +D ++ + LS I +AQ P + A + + G V ++ G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENIAGEVKAGDIREGIVKRLVTFGAF 290
Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
V L + G S+ + + ++ +GQ V+ +L+V+ RI+LS+K++
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEA 345
>sp|Q49XT0|RS1_STAS1 30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA
PE=3 SV=1
Length = 393
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 22/223 (9%)
Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
EGQ +K KV E+ V LS R +++ + + D E +E L+
Sbjct: 150 EGQVLKLKVEELDPA---NNRVILS-RKAVEALENAEKKD------------ELLESLNE 193
Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
+++G V +T+ G F+ + +D V +S LS +V+SPE IG+ V ++ SV+
Sbjct: 194 GDVIEGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDK 252
Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
S+R+ +++K D+ + I + GD++ G + R+ ++G F+ I+ + GL H
Sbjct: 253 DSERISLSIK--DTLPSPFESIK--GEFNEGDVIEGTVVRLANFGAFVEIK-PGVQGLVH 307
Query: 1374 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+SE+S H+ + G+ V VK+L VD E RISL +K++
Sbjct: 308 ISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKAT 350
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1308
E L N ++ V V G + + ++ V S +S ++E +F G+++ +V
Sbjct: 103 EQLDNNQTIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIEDF-SDFE-GQVLKLKV 158
Query: 1309 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1368
++P + RV ++ K ++ ++ + L +L+ GD++ G++ R+ ++G F+ I +
Sbjct: 159 EELDPANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGVD- 217
Query: 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
GL HVSELS +HV + E + GE V VKI VDK+ RISL +K +
Sbjct: 218 -GLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDT 264
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 22/250 (8%)
Query: 288 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 341
++KV V +G GL++D+ P++ +ST SD E +V KL+ + + + RV
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDF-EGQVLKLKVEELDPANNRV- 168
Query: 342 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 401
IL + +E L K E L G V++GKV + +FGA V GGV L
Sbjct: 169 ILSRKAVEALENAEKKDELLESL-------NEGDVIEGKVARLTNFGAFVDI-GGVDGLV 220
Query: 402 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT 459
+ +S + P +G + ++ V S+RI+++ K TL +I + E
Sbjct: 221 HVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGEFNEGD 280
Query: 460 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 519
+ G + ++ G FV GVQG SE+ PS GQVV +++
Sbjct: 281 ---VIEGTVVRLANFGAFVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVD 337
Query: 520 PASRRINLSF 529
+ RI+LS
Sbjct: 338 VENERISLSI 347
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 156/386 (40%), Gaps = 37/386 (9%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
+D+K G V G+V ++ IV G + P+ +S I P KVG E+
Sbjct: 11 NDIKEGDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAY 70
Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
V V+ T L K +L SY ++L +T++ K G V G
Sbjct: 71 VTKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV--G 128
Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 538
+GF P S + D E S + GQV+K ++ PA+ R+ LS K E
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQVLKLKVEELDPANNRVILS--RKAVEALENAEKK 184
Query: 539 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
D+L++ G ++ G V +T V + G G + L+ EH + V+
Sbjct: 185 DELLESLNEGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVKSPEDVVSI 239
Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
G + ++ +D +S + LS K +L + + + + + V+ G V + G FV
Sbjct: 240 GETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGE---FNEGDVIEGTVVRLANFGAFV 296
Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
+ G S+ S+ GQ V +L V+ E RI+LS+K + +
Sbjct: 297 EIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNEN- 355
Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSE 740
++E QS NGS+
Sbjct: 356 --------VIESDSETTQSYLDNGSD 373
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 16/189 (8%)
Query: 283 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 342
GD+ + KV R+ G +DI V +S+++ E V+ E G V V+I
Sbjct: 194 GDVI-EGKVARL-TNFGAFVDIGGVD----GLVHVSELSHEHVKSPEDVVSIGETVNVKI 247
Query: 343 LGF-RHLEGLATGILKA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 399
+ E ++ I S FE + + G V++G V+ + +FGA V+ GV+
Sbjct: 248 KSVDKDSERISLSIKDTLPSPFESI---KGEFNEGDVIEGTVVRLANFGAFVEIKPGVQG 304
Query: 400 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAE 457
L + +S I P + + G + +VLG V+++RI+++ K TL ++ S +E
Sbjct: 305 LVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNEN--VIESDSE 362
Query: 458 ATDRLITHG 466
T + +G
Sbjct: 363 TTQSYLDNG 371
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 36/66 (54%)
Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
++++ GD V G+++ +E + + + G+ +S+LS H+DN + G+++
Sbjct: 10 INDIKEGDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKVGDEIGA 69
Query: 1398 KILKVD 1403
+ KV+
Sbjct: 70 YVTKVE 75
>sp|P38016|RS1_CHLMU 30S ribosomal protein S1 OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=rpsA PE=3 SV=2
Length = 570
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 100/411 (24%), Positives = 183/411 (44%), Gaps = 75/411 (18%)
Query: 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1091
++IG+R G V + + L + + L I D ++ PSE+ E + +
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271
Query: 1092 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
+LS++KEK + L L+ P++D ++ G V G+I K+L
Sbjct: 272 --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316
Query: 1147 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1203
G ++I + G +H +E+ KNI DP ++G V+ VL
Sbjct: 317 PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361
Query: 1204 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1263
I + ++SL G+ T + P ++E E + V +KN
Sbjct: 362 SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLRVTAEIKN 401
Query: 1264 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322
+T+ G F+ L ++ + +S++S V P + F G V +LSV+ SK++ + +
Sbjct: 402 LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461
Query: 1323 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
K + E + VG + G + ++ ++G F+ ++N + GL HVS+LS+
Sbjct: 462 KQLTPNPWDEIE----AMFPVGSDISGIVTKITAFGAFVELQN-GIEGLIHVSKLSDKPF 516
Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1433
IE I G+KV K++K+D + +++SL +K F + +EEE+
Sbjct: 517 AKIEDILSIGDKVSAKVIKLDPDHKKVSLSIKE--FLAHGGHAGQDAEEET 565
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)
Query: 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1193
EG IV G+I++ + G GL+V IG + P S D + L Y
Sbjct: 133 EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175
Query: 1194 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1253
G+ + K+L+I+ R +V +S R L+ + ++L IE ++
Sbjct: 176 VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219
Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1313
+G VKN+T G F+ L +D + +++++ + P + + + + +LSV+
Sbjct: 220 GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278
Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1373
RV + LK + E G V G+I ++ YG FI IE + GL H
Sbjct: 279 EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333
Query: 1374 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1426
VSE+S ++ VD E + + G++V+V +L + K++ +ISLG+K + N DN++
Sbjct: 334 VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTEH-NPWDNIE 386
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 6/198 (3%)
Query: 335 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 394
G V V +L + EG + LK + G+ V ++ + ++GA V+
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412
Query: 395 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 451
G++ L + MS + V P + FK G + +L V +SK+IT+ K+ I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472
Query: 452 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 511
+ + +D G +TKI G FV NG++G S+L P + + +G V
Sbjct: 473 EAMFPVGSD---ISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILSIGDKV 529
Query: 512 KCRIMSSIPASRRINLSF 529
+++ P ++++LS
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 96/476 (20%), Positives = 190/476 (39%), Gaps = 72/476 (15%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
S+V+PG ++KG V+ + +V G+K+ +P MSEF + + VGAE+ +
Sbjct: 47 SEVQPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLSVGAEVEVYL 101
Query: 429 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
+ + ++ ++ +K + + + ++ E I G IT+ K G V G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GMEA 157
Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED---- 539
F P S++ D + +VG+V + +I+ I RR ++ +++ R+S+
Sbjct: 158 FLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAELI 214
Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 599
+ + +G G+V +T V ++ G T+ + H + M E
Sbjct: 215 EQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VEL 265
Query: 600 DQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
+Q +L +D E + L K N + + P V G + ++ G F+
Sbjct: 266 NQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAFI 322
Query: 655 RFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
+ G S+ + D ++ G V +L + + G+I+L LKQ+ +
Sbjct: 323 EIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPW 382
Query: 714 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE-- 771
D +EEK + IG + ++ ++G V E
Sbjct: 383 DN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPGI 415
Query: 772 ----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
H +I + G+ ++A IL V K + + L +K + + + E
Sbjct: 416 EGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 145/375 (38%), Gaps = 60/375 (16%)
Query: 642 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 701
G V NI + G F+ G + G + + S+ + Q + IL V+ E GR+
Sbjct: 225 GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRV 283
Query: 702 TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 761
L LKQ +EH E+ E K + G + GK+ +
Sbjct: 284 ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRVRGKIVKLL 316
Query: 762 DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 815
+G + EE H ++ + V G ++ +L + K E + L LK
Sbjct: 317 PYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQ 376
Query: 816 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 875
E N ++K +G+ T I + V P I +
Sbjct: 377 T------EHNPWDNIEEKY-------PIGLRVTAE-IKNLTNYGAFVELEPGIEGLIHIS 422
Query: 876 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 935
+S P + F G +V A ++++ S ++ L +K ++ + + ++
Sbjct: 423 DMSWIKKVSHPSELFKKGNTVEAVILSVDKESK--KITLGVKQLT-----PNPWDEIEAM 475
Query: 936 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 995
+ VGS + +T+I ++ G G IH+++++D +E++ S IG V+A+
Sbjct: 476 FPVGSDISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILS---IGDKVSAK 532
Query: 996 IIAKSNKPDMKKSFL 1010
+I PD KK L
Sbjct: 533 VIKLD--PDHKKVSL 545
>sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=rpsA PE=3 SV=1
Length = 559
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 183/408 (44%), Gaps = 67/408 (16%)
Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1094
GQ+V G V + + A + + + L I D A++ PSE+ ++G +
Sbjct: 192 GQQVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRIKHPSEI------VNVGDEIDVK 244
Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
VL ++E+ + L L+ + D V I + EG V R++ + G
Sbjct: 245 VLKFDRERNRVSLGLKQLGE---DPWVAI-----KARYPEGTRVMARVTNLTDY--GCFA 294
Query: 1155 QIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210
++ + G VH +E+ KNI S + DE V+ +VL+I R
Sbjct: 295 ELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDE--------------VEVQVLDIDEERR 340
Query: 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1270
+ L ++ S D S+ + + + G +K++T G F
Sbjct: 341 ---RISLGIKQC----KSNPWEDFSSQFNKGDR-------------ISGTIKSITDFGIF 380
Query: 1271 IMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1329
I L +D V LS++S V E + F G + +LSV+P +R+ + +K +
Sbjct: 381 IGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERERISLGIKQLEDDP 440
Query: 1330 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1388
S N ++LH G IV G +K V++ G I++ ++ G+ SE+S D V++ +
Sbjct: 441 FS-----NYASLHEKGSIVRGTVKEVDAKGAVISL-GDDIEGILKASEISRDRVEDARNV 494
Query: 1389 YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1436
+ GE+V+ KI+ +D++ R ISL +KS ++ D ++ ++E + A
Sbjct: 495 LKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKELRKQEVESA 542
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 89/171 (52%), Gaps = 13/171 (7%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+E L V+G VKN+T G F+ L +D + +++++ ++ P + +G + +
Sbjct: 186 LESLQEGQQVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRIKHPSEIVNVGDEIDVK 244
Query: 1308 VLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
VL + RV + LK D A ++ G V+ ++ + YG F +E
Sbjct: 245 VLKFDRERNRVSLGLKQLGEDPWVAIKARYPE------GTRVMARVTNLTDYGCFAELEE 298
Query: 1366 TNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ GL HVSE+ + NI + + G++V+V++L +D+E+RRISLG+K
Sbjct: 299 -GVEGLVHVSEMDWTN-KNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIK 347
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 157/364 (43%), Gaps = 39/364 (10%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
D++PG ++ G V+ +D G V G+K+ +P + +F + KVG E+ +
Sbjct: 17 DMQPGAIITGIVVDID--GDWVTVHAGLKSEGVIP-VEQFYNEQGELTIKVGDEVHVALD 73
Query: 430 GVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
V+ T ++ +++ I+ A A D ++ K++ G F NG++ F
Sbjct: 74 AVEDGFGETKLSREKAKRAESWIVLEAAFAADEVVKGVINGKVK--GGFTVDVNGIRAFL 131
Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLV 542
P S + + P + + + G+ ++ +++ +++ SRR L R + + +
Sbjct: 132 PGSLVDVRPVRDTTHLE--GKELEFKVIKLDQKRNNVVVSRRSVLEAENSAEREALLESL 189
Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD- 600
+ G V G+V +T V + G G + +A ++H + ++ G E D
Sbjct: 190 QEGQQVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRIKHPS---EIVNVGDEIDV 243
Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVR 655
++L D E + + L K QL D + + V V N+ + GCF
Sbjct: 244 KVLKFDRERNRVSLGLK--------QLGEDPWVAIKARYPEGTRVMARVTNLTDYGCFAE 295
Query: 656 FLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
+ G S+ +D ++ SK VG V +LD++ E RI+L +KQ C S+
Sbjct: 296 LEEGVEGLVHVSE-MDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQ-CKSNP 353
Query: 714 DASF 717
F
Sbjct: 354 WEDF 357
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 4/178 (2%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG-KKFKVGAELVFR 427
S G + G + ++ FG + GG+ L L +S E+ + ++FK G EL
Sbjct: 359 SQFNKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETV 418
Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQG 486
+L V +R ++ ++ S+YA ++ I G + +++ G + + ++G
Sbjct: 419 ILSVDPERERISLGIKQLEDDP--FSNYASLHEKGSIVRGTVKEVDAKGAVISLGDDIEG 476
Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL 544
SE+ D + ++ G+ V+ +I+S SR I+LS K +D + +L
Sbjct: 477 ILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKEL 534
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 142/368 (38%), Gaps = 61/368 (16%)
Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 149
LE++QEG + VK++ D+G + G G L ++A N G IDV
Sbjct: 186 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 243
Query: 150 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 203
K V DR R V L DP ++I P G V R
Sbjct: 244 K--------VLKFDRERNRVSLGLKQLGEDP------------WVAIKARYPEGTRVMAR 283
Query: 204 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 263
V ++ + G G V + + T + +V ++L +D R +
Sbjct: 284 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRIS 343
Query: 264 LTL-----NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS 318
L + NP+ S GD + D G+ + LD + + ++ +
Sbjct: 344 LGIKQCKSNPW----EDFSSQFNKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWN 399
Query: 319 DVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKPGM 375
+V EE VR ++K+G + IL E ++ GI L+ F H + G
Sbjct: 400 EVGEEAVR----RFKKGDELETVILSVDPERERISLGIKQLEDDPFSNYASLH---EKGS 452
Query: 376 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 433
+V+G V VD+ GA++ ++ + +S + K G E+ +++ + KS
Sbjct: 453 IVRGTVKEVDAKGAVISLGDDIEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKS 512
Query: 434 KRITVTHK 441
+ I+++ K
Sbjct: 513 RVISLSVK 520
>sp|Q9ZKF6|RS1_HELPJ 30S ribosomal protein S1 OS=Helicobacter pylori (strain J99) GN=rpsA
PE=3 SV=1
Length = 552
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 151/339 (44%), Gaps = 63/339 (18%)
Query: 1086 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1145
HIGK + ++ ++KE + + + F + + ++IS + ++
Sbjct: 155 HIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISKELLEA--------------- 199
Query: 1146 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1197
V G+V QI P + G VH++E+ + +G +P Y EG
Sbjct: 200 TEPVLGVVRQITPFGIFVKFKGIDGLVHYSEISH-----------KGPVNPEKYYKEGDE 248
Query: 1198 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMI 1256
V K + R + LS++++ ++ P E+I+D L P
Sbjct: 249 VYVKAIAYDEEKR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYA 287
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
++ V N+ G F+ + ++ + +S +S D V P +G+ + +++ ++P +
Sbjct: 288 IKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKN 347
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
+R+ V+LK +R E S VGDIV G++ + +G F+ + + GL H
Sbjct: 348 RRLRVSLKQLTNRPFDVFE----SKHQVGDIVEGKVATLTDFGAFLNLGGVD--GLLHNH 401
Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ D + Y+ G+ +KVKILK++K+ ++ISL K
Sbjct: 402 DAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 440
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 159/400 (39%), Gaps = 62/400 (15%)
Query: 432 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
K + +V++KK + + K+ A + E + I G I K G V GV+ F R
Sbjct: 86 KGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 144
Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 544
S L + H+G+ +K I+ + IN+S F + R E +L++
Sbjct: 145 SHSSL-----KNDANHIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISKELLEA 199
Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 602
V GVV +TP + V KG H ++ V + K G E + +
Sbjct: 200 TEPVLGVVRQITPFGIFVKF------KGIDGLVHYSEISHKGPVNPEKYYKEGDEVYVKA 253
Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
+ D E L LS K ++ + +++ + P + V NI G FV + G
Sbjct: 254 IAYDEEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEG 310
Query: 663 FAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 721
F S+ + D + S VGQ + I+D++ + R+ +SLKQ D
Sbjct: 311 FLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFD------- 363
Query: 722 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 781
+ SKH +G ++EGKV DFG ++ V G + +
Sbjct: 364 ---------VFESKHQ-----------VGDIVEGKVATLTDFGAFLNL---GGVDGLLHN 400
Query: 782 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
H + + G VI+ IL + K ++ + LS K
Sbjct: 401 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 440
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 88/203 (43%), Gaps = 7/203 (3%)
Query: 329 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 388
EK YKEG V V+ + + + + +KA+ + +KPG +K V ++ +G
Sbjct: 240 EKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYG 299
Query: 389 AIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 445
V ++ + +S + + P VG E+ +++ + K++R+ V+ K+ L
Sbjct: 300 VFVDIGNDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQ-LT 358
Query: 446 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 505
+ S + D I G + + G F+ GV G + D + Y
Sbjct: 359 NRPFDVFESKHQVGD--IVEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHY 415
Query: 506 HVGQVVKCRIMSSIPASRRINLS 528
+G V+K +I+ ++I+LS
Sbjct: 416 KIGDVIKVKILKINKKDKKISLS 438
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 19/177 (10%)
Query: 1247 KIEDLSPN---MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
KIE+L N I++G + +KG +I+ S+ ++ LS + IGK
Sbjct: 106 KIEELGENYENAIIEGKIVG-KNKGGYIVESQGVEY-----FLSRSHSSLKNDANHIGKR 159
Query: 1304 VAGRVLSVEPLSKRVEVTLK----TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
+ ++ V+ + + ++ K +D R Q EI+ L + V+G ++++ +G+
Sbjct: 160 IKACIIRVDKENHSINISRKRFFEVNDKR---QLEISK-ELLEATEPVLGVVRQITPFGI 215
Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
F+ + + GL H SE+S N E Y+ G++V VK + D+EKRR+SL +K++
Sbjct: 216 FVKFKGID--GLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIKAT 270
>sp|Q7A5J0|RS1_STAAN 30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315)
GN=rpsA PE=1 SV=1
Length = 391
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIHGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNED 355
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
E L N I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
+V ++P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGV 216
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ GL HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 544 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIHGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 89/400 (22%), Positives = 166/400 (41%), Gaps = 90/400 (22%)
Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 159
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 160 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 193
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 194 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 253
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 254 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 309
+ +AV N LL + + GD+ KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVI-HGKVARLTQ-FGAFIDIGGVD- 217
Query: 310 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 364
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 425 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 457
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
++++ GD V G++++VE + + I G+ +S+LS H+D+ + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEA 69
Query: 1398 KILKV--DKE---------KRRISLGMKSSYFKNDADNLQM 1427
+ KV D+E +R++ SY + DN ++
Sbjct: 70 YVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEI 110
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
IG+ V + SI+++ + + L ++ T+ +N++ HE D++ G + ++
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIK--------DTLPTPFENIKGQFHENDVIEGVVVRLA 290
Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
+ G V+I P + G VH +E+ + + P G+ + GQ V K+L I
Sbjct: 291 NF--GAFVEIAPGVQGLVHISEIAHKHIGTP------GEV-----LEPGQQVNVKILGID 337
Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
V LS++++L N + +D T +LE E+ +P +
Sbjct: 338 EE---NERVSLSIKATL-----PNEDVVESDPSTTKAYLENEEEDNPTI 378
>sp|Q99U14|RS1_STAAM 30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=rpsA PE=1 SV=1
Length = 391
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIHGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNED 355
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
E L N I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
+V ++P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGV 216
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ GL HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 544 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIHGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 89/400 (22%), Positives = 166/400 (41%), Gaps = 90/400 (22%)
Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 159
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 160 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 193
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 194 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 253
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 254 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 309
+ +AV N LL + + GD+ KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVI-HGKVARLTQ-FGAFIDIGGVD- 217
Query: 310 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 364
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 425 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 457
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
++++ GD V G++++VE + + I G+ +S+LS H+D+ + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEA 69
Query: 1398 KILKV--DKE---------KRRISLGMKSSYFKNDADNLQM 1427
+ KV D+E +R++ SY + DN ++
Sbjct: 70 YVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEI 110
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
IG+ V + SI+++ + + L ++ T+ +N++ HE D++ G + ++
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIK--------DTLPTPFENIKGQFHENDVIEGVVVRLA 290
Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
+ G V+I P + G VH +E+ + + P G+ + GQ V K+L I
Sbjct: 291 NF--GAFVEIAPGVQGLVHISEIAHKHIGTP------GEV-----LEPGQQVNVKILGID 337
Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
V LS++++L N + +D T +LE E+ +P +
Sbjct: 338 EE---NERVSLSIKATL-----PNEDVVESDPSTTKAYLENEEEDNPTI 378
>sp|Q8NWM8|RS1_STAAW 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2)
GN=rpsA PE=3 SV=1
Length = 391
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNED 355
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
E L N I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
+V ++P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGV 216
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ GL HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 544 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)
Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 159
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 160 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 193
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 194 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 253
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 254 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 309
+ +AV N LL + + GD+ D KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217
Query: 310 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 364
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 425 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 457
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 112/303 (36%), Gaps = 67/303 (22%)
Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 596
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 597 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 646
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 647 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 707 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 766
DA +K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDA----------KKDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210
Query: 767 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 819
+ V G + H Q V G ++ I + + + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267
Query: 820 RFR 822
F
Sbjct: 268 PFE 270
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
++++ GD V G++++VE + + I G+ +S+LS H+D+ + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEA 69
Query: 1398 KILKV--DKE---------KRRISLGMKSSYFKNDADNLQM 1427
+ KV D+E +R++ SY + DN ++
Sbjct: 70 YVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEI 110
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
IG+ V + SI+++ + + L ++ T+ +N++ HE D++ G + ++
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIK--------DTLPTPFENIKGQFHENDVIEGVVVRLA 290
Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
+ G V+I P + G VH +E+ + + P G+ + GQ V K+L I
Sbjct: 291 NF--GAFVEIAPGVQGLVHISEIAHKHIGTP------GEV-----LEPGQQVNVKILGID 337
Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
V LS++++L N + +D T +LE E+ +P +
Sbjct: 338 EE---NERVSLSIKATL-----PNEDVVESDPSTTKAYLENEEEDNPTI 378
>sp|Q6G987|RS1_STAAS 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476)
GN=rpsA PE=3 SV=1
Length = 391
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNED 355
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
E L N I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
+V ++P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGV 216
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ GL HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 544 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)
Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 159
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 160 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 193
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 194 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 253
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 254 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 309
+ +AV N LL + + GD+ D KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217
Query: 310 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 364
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 425 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 457
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 112/303 (36%), Gaps = 67/303 (22%)
Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 596
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 597 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 646
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 647 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 707 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 766
DA +K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDA----------KKDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210
Query: 767 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 819
+ V G + H Q V G ++ I + + + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267
Query: 820 RFR 822
F
Sbjct: 268 PFE 270
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
++++ GD V G++++VE + + I G+ +S+LS H+D+ + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEA 69
Query: 1398 KILKV--DKE---------KRRISLGMKSSYFKNDADNLQM 1427
+ KV D+E +R++ SY + DN ++
Sbjct: 70 YVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEI 110
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
IG+ V + SI+++ + + L ++ T+ +N++ HE D++ G + ++
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIK--------DTLPTPFENIKGQFHENDVIEGVVVRLA 290
Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
+ G V+I P + G VH +E+ + + P G+ + GQ V K+L I
Sbjct: 291 NF--GAFVEIAPGVQGLVHISEIAHKHIGTP------GEV-----LEPGQQVNVKILGID 337
Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
V LS++++L N + +D T +LE E+ +P +
Sbjct: 338 EE---NERVSLSIKATL-----PNEDVVESDPSTTKAYLENEEEDNPTI 378
>sp|Q5HFU7|RS1_STAAC 30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL)
GN=rpsA PE=3 SV=1
Length = 391
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNED 355
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
E L N I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
+V ++P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGV 216
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ GL HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 544 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)
Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 159
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 160 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 193
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 194 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 253
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 254 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 309
+ +AV N LL + + GD+ D KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217
Query: 310 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 364
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 425 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 457
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 112/303 (36%), Gaps = 67/303 (22%)
Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 596
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 597 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 646
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 647 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 707 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 766
DA +K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDA----------KKDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210
Query: 767 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 819
+ V G + H Q V G ++ I + + + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267
Query: 820 RFR 822
F
Sbjct: 268 PFE 270
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
++++ GD V G++++VE + + I G+ +S+LS H+D+ + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEA 69
Query: 1398 KILKV--DKE---------KRRISLGMKSSYFKNDADNLQM 1427
+ KV D+E +R++ SY + DN ++
Sbjct: 70 YVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEI 110
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 1087 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1146
IG+ V + SI+++ + + L ++ T+ +N++ HE D++ G + ++
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIK--------DTLPTPFENIKGQFHENDVIEGVVVRLA 290
Query: 1147 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1206
+ G V+I P + G VH +E+ + + P G+ + GQ V K+L I
Sbjct: 291 NF--GAFVEIAPGVQGLVHISEIAHKHIGTP------GEV-----LEPGQQVNVKILGID 337
Query: 1207 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1255
V LS++++L N + +D T +LE E+ +P +
Sbjct: 338 EE---NERVSLSIKATL-----PNEDVVESDPSTTKAYLENEEEDNPTI 378
>sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ispH PE=3 SV=1
Length = 642
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 170/357 (47%), Gaps = 37/357 (10%)
Query: 1078 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT-VDISNDNMQTFIHEGD 1136
+ E + + ++G +VTG ++ +++++ L + + +DG+ K+ +D +++ GD
Sbjct: 299 IAENEGKIYVGASVTGEIIQVSEKEVFLNINYK--RDGVIPKSEIDDDGKDLKELFTVGD 356
Query: 1137 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK---------NICVSDPLSGYDEGQFD 1187
+ +I K+ +V+ + L + E+K N+ V + + G +
Sbjct: 357 KIVAKIIKLKDADNYVVLSV-KELQREQGYKEIKEAFENKTTLNVVVKEDVKGGIIASYK 415
Query: 1188 PLSGYDEGQFVKC-KVLEISRTVRGTFHV---ELSLRSSLDGMSSTNSSDLSTDVDTPGK 1243
+ + V+ V + + +F V E S + + ++ + LS K
Sbjct: 416 GIRIFIPASHVELFHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLS-------K 468
Query: 1244 HLEKIED-----LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1298
EK+E+ L +V+G VK +T G F+ + +D + +S +S G VE P
Sbjct: 469 EKEKVEETVWNKLEEGQVVEGEVKRLTDFGAFVEI-EGVDGLLHVSEISWGRVEKPADVL 527
Query: 1299 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESY 1357
IG + VLSV+ +K++ +++K +++ NN+ + VG +V+G++ R +
Sbjct: 528 KIGDKIKVYVLSVDKENKKLSLSVKK-----LTENPWNNVEEKYPVGSVVLGKVIRFADF 582
Query: 1358 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
G F+ +E + GL H+SE+S + GE++K KIL+V E+++I L ++
Sbjct: 583 GAFVKLE-PGVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSIR 638
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 6/161 (3%)
Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
++ G VV+G+V + FGA V+ GV L + +S + KP K+G ++ VL
Sbjct: 481 LEEGQVVEGEVKRLTDFGAFVEIE-GVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLS 539
Query: 431 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
V ++K+++++ KK + Y + + G + + G FV+ GV G
Sbjct: 540 VDKENKKLSLSVKKLTENPWNNVEEKYPVGS---VVLGKVIRFADFGAFVKLEPGVDGLV 596
Query: 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
SE+ +PS +VG+ +K +I+ ++I LS
Sbjct: 597 HISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSI 637
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 150/363 (41%), Gaps = 48/363 (13%)
Query: 466 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 525
G I ++ + F+ G P+SE+ D G + ++ VG + +I+ A +
Sbjct: 314 GEIIQVSEKEVFLNINYKRDGVIPKSEID-DDGKDLKELFTVGDKIVAKIIKLKDADNYV 372
Query: 526 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT---IPTEHLADH 582
LS + + R +K ++VV V +IA KG IP H+
Sbjct: 373 VLS-VKELQREQGYKEIKEAFENKTTLNVVVKEDVKGGIIAS--YKGIRIFIPASHV--E 427
Query: 583 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVV 640
L H +K I ++ + + +++++ +L++ ++ + + + VV
Sbjct: 428 LFHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLSKEKEKVEETVWNKLEEGQVV 487
Query: 641 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 700
G V + + G FV G + G S+ G+ + +G ++ +L V+ E +
Sbjct: 488 EGEVKRLTDFGAFVEIEG-VDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKK 546
Query: 701 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 760
++LS+K+ L + N E E + +GSV+ GKV
Sbjct: 547 LSLSVKK-----------------------LTENPWNNVE----EKYPVGSVVLGKVIRF 579
Query: 761 NDFGVVVSFEEHSDVYGF-----ITHHQLAGAT--VESGSVIQAAILDVAKAERLVDLSL 813
DFG V E D G I+H ++A + + G I+A IL+V+ E+ + LS+
Sbjct: 580 ADFGAFVKLEPGVD--GLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSI 637
Query: 814 KTV 816
+ V
Sbjct: 638 REV 640
>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus subtilis (strain 168)
GN=ypfD PE=1 SV=1
Length = 382
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 95/172 (55%), Gaps = 6/172 (3%)
Query: 1243 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1302
K E ++ L ++ G V+ +T G F+ + +D V +S LS +VE P G+
Sbjct: 177 KKQELLQSLEVGSVLDGKVQRLTDFGAFVDIG-GIDGLVHISQLSHSHVEKPSDVVEEGQ 235
Query: 1303 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1362
V +VLSV+ ++R+ +++K D+ ++I + GD++ G ++R+ S+G F+
Sbjct: 236 EVKVKVLSVDRDNERISLSIK--DTLPGPWNQIGE--KVKPGDVLEGTVQRLVSFGAFVE 291
Query: 1363 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
I + GL H+S++S H+ + G+ VKVK+L V++ + RISL M+
Sbjct: 292 I-LPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMR 342
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 1328 RTASQSEINN-----LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
R +SE N L +L VG ++ G+++R+ +G F+ I + GL H+S+LS HV
Sbjct: 167 RAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGID--GLVHISQLSHSHV 224
Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ + G++VKVK+L VD++ RISL +K +
Sbjct: 225 EKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDT 258
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 6/158 (3%)
Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 432
G V+ GKV + FGA V GG+ L + +S + KP + G E+ +VL V
Sbjct: 188 GSVLDGKVQRLTDFGAFVDI-GGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDR 246
Query: 433 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
++RI+++ K TL + + D L G + ++ G FV GV+G S
Sbjct: 247 DNERISLSIKDTL-PGPWNQIGEKVKPGDVL--EGTVQRLVSFGAFVEILPGVEGLVHIS 303
Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
++ P + GQ VK +++ RI+LS
Sbjct: 304 QISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSM 341
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 146/345 (42%), Gaps = 28/345 (8%)
Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVK--ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
G VVKG V V+ V+ VK + P+ +S + K KV EL +V V
Sbjct: 16 GDVVKGIVTKVEDKHVDVEIIN-VKQSGIIPISELSSLHVEKASDVVKVDDELDLKVTKV 74
Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
+ + ++ + L E + + + + K G V GV+GF P S
Sbjct: 75 EDDALILSKRAVDADRAWEDLEKKFETKE--VFEAEVKDVVKGGLVVDI--GVRGFIPAS 130
Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDD----LVKLG 545
L E + Y G+ + ++ R+ LS +++ + ++ +++G
Sbjct: 131 -LVEAHFVEDFTDYK-GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVG 188
Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPGYEFD-QL 602
S++ G V +T V + G G + H++ L H+ V K V++ G E ++
Sbjct: 189 SVLDGKVQRLTDFGAFVDI---GGIDGLV---HIS-QLSHSHVEKPSDVVEEGQEVKVKV 241
Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
L +D ++ + LS K +L Q+ + P V+ G V ++ G FV L + G
Sbjct: 242 LSVDRDNERISLSIKDTLPGPWNQI---GEKVKPGDVLEGTVQRLVSFGAFVEILPGVEG 298
Query: 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
S+ + + GQ+V+ +LDVN RI+LS+++
Sbjct: 299 LVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRE 343
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 119/280 (42%), Gaps = 45/280 (16%)
Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQ 601
++G +V G+V V V V +I S G IP L+ H+E A+ V+K E D
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQS-GIIPISELSSLHVEKAS---DVVKVDDELD- 68
Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 661
L V E L+LS + +++ + V V ++++ G V R
Sbjct: 69 LKVTKVEDDALILSKRA--VDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDIGVR-- 124
Query: 662 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 721
GF P S D T Y G+++ +++++ + R+ LS ++ S A+ QE
Sbjct: 125 GFIPASLVEAHFVEDF--TDYKGKTLSLLVVELDRDKNRVILS-HRAVVESEQANKKQE- 180
Query: 722 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 781
+LQS + +GSV++GKV DFG +F + + G +
Sbjct: 181 --------LLQSLE-------------VGSVLDGKVQRLTDFG---AFVDIGGIDGLVHI 216
Query: 782 HQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLK 814
QL+ + VE G ++ +L V + + LS+K
Sbjct: 217 SQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIK 256
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 85/189 (44%), Gaps = 34/189 (17%)
Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
G ++ G++ ++ G V IG + G VH ++L + V P +EGQ
Sbjct: 188 GSVLDGKVQRLTDF--GAFVDIGG-IDGLVHISQLSHSHVEKPSDVVEEGQE-------- 236
Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
VK KVL + R + LS++ +L PG + E + P
Sbjct: 237 ---VKVKVLSVDRD---NERISLSIKDTL-----------------PGPWNQIGEKVKPG 273
Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
+++G V+ + S G F+ + ++ V +S +S+ ++ +P + G+ V +VL V
Sbjct: 274 DVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNEN 333
Query: 1315 SKRVEVTLK 1323
+R+ ++++
Sbjct: 334 EERISLSMR 342
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 280 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 339
++VG + D KV R+ G +DI V IS ++ V K +EG V+
Sbjct: 185 LEVGSVLD-GKVQRL-TDFGAFVDIGGID----GLVHISQLSHSHVEKPSDVVEEGQEVK 238
Query: 340 VRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 398
V++L R E ++ I K + VKPG V++G V + SFGA V+ GV+
Sbjct: 239 VKVLSVDRDNERISLSI-KDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVE 297
Query: 399 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 442
L + +S I P + + G + +VL V +RI+++ ++
Sbjct: 298 GLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRE 343
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 1343 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1402
VGD+V G + +VE + + I N G+ +SELS HV+ + + +++ +K+ KV
Sbjct: 15 VGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVVKVDDELDLKVTKV 74
Query: 1403 DKE 1405
+ +
Sbjct: 75 EDD 77
>sp|P56008|RS1_HELPY 30S ribosomal protein S1 OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=rpsA PE=3 SV=1
Length = 556
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 151/339 (44%), Gaps = 63/339 (18%)
Query: 1086 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1145
HIGK V ++ ++KE + + + F + + +++S + ++
Sbjct: 159 HIGKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA--------------- 203
Query: 1146 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1197
V G+V QI P + G VH++E+ + +G +P Y EG
Sbjct: 204 TEPVLGVVRQITPFGIFVEAKGIEGLVHYSEISH-----------KGPVNPEKYYKEGDE 252
Query: 1198 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMI 1256
V K + R + LS++++ ++ P E+I+D L P
Sbjct: 253 VYVKAIAYDAEKR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYA 291
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1315
++ V N+ G F+ + ++ + +S +S D V P +G+ + +++ ++P +
Sbjct: 292 IKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKN 351
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
+R+ V+LK +R E S VGD++ G++ + +G F+ + + GL H
Sbjct: 352 RRLRVSLKQLTNRPFDVFE----SKHQVGDVLEGKVATLTDFGAFLNLGGVD--GLLHNH 405
Query: 1376 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ D + Y+ G+ +KVKILK++K+ ++ISL K
Sbjct: 406 DAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 444
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 99/400 (24%), Positives = 162/400 (40%), Gaps = 62/400 (15%)
Query: 432 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490
K + +V++KK + + K+ A + E + I G I K G V GV+ F R
Sbjct: 90 KGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 148
Query: 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 544
S L + H+G+ VK I+ + IN+S F + R E +L++
Sbjct: 149 SHSSL-----KNDANHIGKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA 203
Query: 545 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 602
V GVV +TP + +V AKG +G + H ++ V + K G E + +
Sbjct: 204 TEPVLGVVRQITPFGI--FVEAKGI-EGLV---HYSEISHKGPVNPEKYYKEGDEVYVKA 257
Query: 603 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 662
+ D E L LS K ++ + +++ + P + V NI G FV + G
Sbjct: 258 IAYDAEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEG 314
Query: 663 FAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 721
F S+ + Y VGQ + I+D++ + R+ +SLKQ D
Sbjct: 315 FLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFD------- 367
Query: 722 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 781
+ SKH +G V+EGKV DFG ++ V G + +
Sbjct: 368 ---------VFESKHQ-----------VGDVLEGKVATLTDFGAFLNL---GGVDGLLHN 404
Query: 782 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 814
H + + G VI+ IL + K ++ + LS K
Sbjct: 405 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 444
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 129/298 (43%), Gaps = 38/298 (12%)
Query: 377 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSK 434
V G V + FG V+ G++ L +S V P K +K G E+ + + + +
Sbjct: 207 VLGVVRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKR 265
Query: 435 RITVTHKKTLVKSKLAILSSYAEATDRLITHGW-----ITKIEKHGCFVRFYNGVQGFAP 489
R++++ K T I + E D+L G+ ++ IE +G FV N ++GF
Sbjct: 266 RLSLSIKAT-------IEDPWEEIQDKL-KPGYAIKVVVSNIEHYGVFVDIGNDIEGFLH 317
Query: 490 RSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLG 545
SE+ D P++ VGQ + +I+ P +RR+ +S +P V E ++G
Sbjct: 318 VSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKH-QVG 376
Query: 546 SLVSGVVDVVTP-----NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 600
++ G V +T N V + + + DH + V+K
Sbjct: 377 DVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKV--------- 427
Query: 601 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 658
++L ++ + + LSAK+ + + ++ A +SV+ G V +I + G F+ G
Sbjct: 428 KILKINKKDKKISLSAKHLVTSPTEEF---AQKHKTDSVIQGKVVSIKDFGVFINADG 482
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 19/177 (10%)
Query: 1247 KIEDLSPN---MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1303
KIE+L N I++G + +KG +I+ S+ ++ LS + IGK
Sbjct: 110 KIEELGENYENAIIEGKIVG-KNKGGYIVESQGVEY-----FLSRSHSSLKNDANHIGKR 163
Query: 1304 VAGRVLSVEPLSKRVEVTLK----TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1359
V ++ V+ + + ++ K +D R S+ L + V+G ++++ +G+
Sbjct: 164 VKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK----ELLEATEPVLGVVRQITPFGI 219
Query: 1360 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
F+ E + GL H SE+S N E Y+ G++V VK + D EKRR+SL +K++
Sbjct: 220 FV--EAKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIKAT 274
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 26/249 (10%)
Query: 192 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 251
D L PG + V +I GV + G + + + ++ N + ++++ +
Sbjct: 284 DKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVK 343
Query: 252 ILFVDPTSRAVGLTLNPYLLHNR---APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 308
I+ +DP +R + ++L L NR S +VGD+ + D G L L
Sbjct: 344 IIDIDPKNRRLRVSLKQ--LTNRPFDVFESKHQVGDVLEGKVATLTDFGAFLNLG----- 396
Query: 309 VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE---GLATGILKASAFEGLV 365
+ D ++ +K + YK G ++V+IL + L+ L S E
Sbjct: 397 -GVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSPTEEFA 455
Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAE 423
H K V++GKV+++ FG + G + + + E + P KK K+G E
Sbjct: 456 QKH---KTDSVIQGKVVSIKDFGVFINADG-------IDVLIKNEDLNPLKKDEIKIGQE 505
Query: 424 LVFRVLGVK 432
+ V+ ++
Sbjct: 506 ITCVVVAIE 514
>sp|Q6GGT5|RS1_STAAR 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252)
GN=rpsA PE=3 SV=1
Length = 391
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 93/174 (53%), Gaps = 6/174 (3%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
+ S++ ++R+ +++K T N H D + G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDDIEGVVVRLANFGAFVEIA-PG 301
Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1421
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNED 355
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
E L N I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
+V ++P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGV 216
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ GL HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 28/355 (7%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 544 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 596 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
G + ++ +D ++ + LS K +L + + H N + G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDDIEGVVVRLANFGAFV 296
Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 112/303 (36%), Gaps = 67/303 (22%)
Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 596
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 597 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 646
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 647 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 707 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 766
DA +K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDA----------KKDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210
Query: 767 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 819
+ V G + H Q V G ++ I + + + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267
Query: 820 RFR 822
F
Sbjct: 268 PFE 270
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 167/401 (41%), Gaps = 90/401 (22%)
Query: 105 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 159
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 160 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 193
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 194 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 253
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 254 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 309
+ +AV N LL + + GD+ D KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217
Query: 310 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 364
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424
F +D G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDDIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 425 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEA 458
++LG+ +++R++++ K TL V+S + +Y E+
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLES 370
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
++++ GD V G++++VE + + I G+ +S+LS H+D+ + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEA 69
Query: 1398 KILKV--DKE---------KRRISLGMKSSYFKNDADNLQM 1427
+ KV D+E +R++ SY + DN ++
Sbjct: 70 YVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEI 110
>sp|Q5HP69|RS1_STAEQ 30S ribosomal protein S1 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=rpsA PE=3 SV=1
Length = 392
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 106/193 (54%), Gaps = 11/193 (5%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
++ L+ ++ G V +T+ G FI + +D V +S LS +V++PE+ +G+ V +
Sbjct: 188 LDSLNEGDVIDGKVARLTNFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSVGEAVKVK 246
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
V SVE S+R+ +++K T N H D++ G + R+ ++G F+ I +
Sbjct: 247 VKSVEKDSERISLSIKD----TLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEIA-PS 301
Query: 1368 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK-----NDA 1422
+ GL H+SE+ H+ + + G++V VKIL +D++ RISL +K++ K +DA
Sbjct: 302 VQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENVIESDA 361
Query: 1423 DNLQMSSEEESDE 1435
Q E+++DE
Sbjct: 362 STTQSYLEDDNDE 374
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 32/372 (8%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 427
+D+K G V G+V V+ +V GG + P+ +S I P + KVG E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70
Query: 428 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 483
V ++ T L K +L SY ++L + +T++ K G V G
Sbjct: 71 VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGLVVDV--G 128
Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 543
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184
Query: 544 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 595
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239
Query: 596 G-YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 654
G ++ ++ +S + LS K +L + + H + V+ G V + G FV
Sbjct: 240 GEAVKVKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 296
Query: 655 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 711
+ G S+ ++ GQ V IL ++ + RI+LS+K +
Sbjct: 297 EIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENV 356
Query: 712 -STDASFMQEHF 722
+DAS Q +
Sbjct: 357 IESDASTTQSYL 368
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 91/170 (53%), Gaps = 10/170 (5%)
Query: 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1306
E L + +++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNDEVIEAEVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
+V ++P + RV ++ K + + + L +L+ GD++ G++ R+ ++G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGV 216
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ GL HVSELS +HV E + GE VKVK+ V+K+ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDT 264
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 24/251 (9%)
Query: 288 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 340
+++V V +G GL++D+ P++ +ST S + +R K+E+ E + V
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168
Query: 341 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400
IL + +E L KAS + L G V+ GKV + +FGA + GGV L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219
Query: 401 CPLPHMSEFEIVKPGKKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 458
+ +S + P + VG ++ + + S+RI+++ K TL I + E
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279
Query: 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518
+ G + ++ G FV VQG SE+ P+ + GQ V +I+
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336
Query: 519 IPASRRINLSF 529
+ RI+LS
Sbjct: 337 DEDNERISLSI 347
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 94/237 (39%), Gaps = 45/237 (18%)
Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 601
+K G V+G V V VVV+ I G G IP L+ H H V+K G E +
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEVEA 69
Query: 602 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 652
+ D E+ + Y L S +QL ++ S+ + + V+ V +++ G
Sbjct: 70 YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGL 123
Query: 653 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179
Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769
DA +K ++L S G VI+GKV +FG +
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFGAFIDI 213
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
++++ GD V G++++VE + + I G+ +S+LS H++N + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEA 69
Query: 1398 KILKV--DKE---------KRRISLGMKSSYFKNDADN 1424
+ K+ D+E KR++ Y + DN
Sbjct: 70 YVTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLDN 107
>sp|P50889|RS1_LEULA 30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2
Length = 429
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 6/165 (3%)
Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
LS +V+G V +T G F+ L +D V +S +S V++P G V ++L+
Sbjct: 228 LSVGEVVEGTVARLTDFGAFVDLG-GVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILA 286
Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
++ R+ +++K + ++ + G ++ G +KRV+ +G F+ I + G
Sbjct: 287 LDTEKGRISLSIKATQRGPWDEAA----DQIAAGSVLEGTVKRVKDFGAFVEIL-PGIEG 341
Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
L HVS++S ++N + ++G+KV+VK+L + + RISL MK+
Sbjct: 342 LVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKA 386
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
K + +V+ ++P + R+ ++ K ++ + S L VG++V G + R+ +G F+
Sbjct: 189 KDIKAQVIEIDPANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFV 248
Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ + GL HVSE+S D V N + G+KV VKIL +D EK RISL +K++
Sbjct: 249 DLGGVD--GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKAT 301
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 118/266 (44%), Gaps = 29/266 (10%)
Query: 283 GDIYDQSKVVRVDRGLGLLLDIPST----PVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 338
GD D +KV+ RG GL++D+ P S A +SD+ + + + ++ + E
Sbjct: 144 GDTVD-AKVINAVRG-GLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPA 201
Query: 339 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 398
R++ R A + +A VF+ V G VV+G V + FGA V GGV
Sbjct: 202 NARLILSRK----AVAAQELAAQLAEVFSKLSV--GEVVEGTVARLTDFGAFVDL-GGVD 254
Query: 399 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYA 456
L + +S + P G ++ ++L + ++ RI+++ K T +
Sbjct: 255 GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQ-------RGPWD 307
Query: 457 EATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 512
EA D++ + G + +++ G FV G++G S++ PS + G V+
Sbjct: 308 EAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQ 367
Query: 513 CRIMSSIPASRRINLSFMM---KPTR 535
+++ PA RI+LS KP R
Sbjct: 368 VKVLDIKPAEERISLSMKALEEKPER 393
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 149/351 (42%), Gaps = 32/351 (9%)
Query: 371 VKPGMVVKGKVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG----AELV 425
+K G VV G+++A+D+ A+V G + + P S+ + + K+G A ++
Sbjct: 52 IKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDRNINLADELKIGDTIEAVVI 111
Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 485
V K + KK L K S+AE + I + G + NGV+
Sbjct: 112 SNVTSDKEGVAYLLSKKRLDARKAWENLSFAEGD--TVDAKVINAV--RGGLIVDVNGVR 167
Query: 486 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---- 541
GF P S + + + + + +K +++ PA+ R+ LS + L
Sbjct: 168 GFVPASMVAERFVSDLNQFKN--KDIKAQVIEIDPANARLILSRKAVAAQELAAQLAEVF 225
Query: 542 --VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
+ +G +V G V +T V + G G + ++ D +++ V+ G +
Sbjct: 226 SKLSVGEVVEGTVARLTDFGAFVDL---GGVDGLVHVSEISHDRVKNPA---DVLTKGDK 279
Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVR 655
D ++L LD E + LS I + Q+ P D A I SV+ G V + + G FV
Sbjct: 280 VDVKILALDTEKGRISLS-----IKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVE 334
Query: 656 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
L + G S+ + + + S+ G V+ +LD+ RI+LS+K
Sbjct: 335 ILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMK 385
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 135/355 (38%), Gaps = 52/355 (14%)
Query: 476 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 535
V G +G P E D + +G ++ ++S++ + + +++++ R
Sbjct: 71 AVVGLSTGEEGVVPAREYSDDRNINLADELKIGDTIEAVVISNVTSDKE-GVAYLLSKKR 129
Query: 536 VSEDDLVKLGSLVSG-VVDVVTPNAVVVYVIA-----KGYSKGTIPTEHLADHLEHATVM 589
+ + S G VD NAV +I +G+ ++ E L
Sbjct: 130 LDARKAWENLSFAEGDTVDAKVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQ--FK 187
Query: 590 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNII 648
IK Q++ +D ++ L+LS K ++ S + VV G V +
Sbjct: 188 NKDIKA-----QVIEIDPANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLT 242
Query: 649 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
+ G FV LG + G S+ + + + G V IL +++E GRI+LS+K +
Sbjct: 243 DFGAFVD-LGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKAT 301
Query: 709 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 768
D + Q GSV+EG V DFG V
Sbjct: 302 QRGPWDEAADQ---------------------------IAAGSVLEGTVKRVKDFGAFV- 333
Query: 769 FEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTV 816
E + G + Q++ +E SG +Q +LD+ AE + LS+K +
Sbjct: 334 -EILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKAL 387
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 94/433 (21%), Positives = 185/433 (42%), Gaps = 67/433 (15%)
Query: 922 TETSSSKRAKKKSSYD---VGSLVQAEITEI-KPLELRLKFGIGFHGRIHITEVNDDKSN 977
+ET++ A +S+ D VG +V E+ I + + G G + E +DD+ N
Sbjct: 35 SETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDR-N 93
Query: 978 VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1037
+ NL KIG T+ A +I SN K+ + LS K L + L F E D
Sbjct: 94 I--NLADELKIGDTIEAVVI--SNVTSDKEGVAYLLSKK--RLDARKAWENLSFAEGDTV 147
Query: 1038 IGQRVT----GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1093
+ + G + V+ + S + A+ F+ S+L +F+ K +
Sbjct: 148 DAKVINAVRGGLIVDVNGVRGFVPAS--MVAERFV-------SDLNQFKN-----KDIKA 193
Query: 1094 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1153
V+ I+ RL+L + ++ + + + + + G++V G ++++ G
Sbjct: 194 QVIEIDPANA--RLILS--RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDF--GAF 247
Query: 1154 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213
V +G + G VH +E+ + V +P D L+ +G V K+L + T +G
Sbjct: 248 VDLG-GVDGLVHVSEISHDRVKNPA--------DVLT---KGDKVDVKILALD-TEKG-- 292
Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
+ LS++++ G E + ++ +++G VK V G F+ +
Sbjct: 293 RISLSIKAT-----------------QRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI 335
Query: 1274 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1333
++ V +S +S+ +E+P + G V +VL ++P +R+ +++K + + +
Sbjct: 336 LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPERED 395
Query: 1334 EINNLSNLHVGDI 1346
N + DI
Sbjct: 396 RRGNDGSASRADI 408
>sp|Q83E09|RS1_COXBU 30S ribosomal protein S1 OS=Coxiella burnetii (strain RSA 493 / Nine
Mile phase I) GN=rpsA PE=1 SV=1
Length = 551
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 96/180 (53%), Gaps = 9/180 (5%)
Query: 1237 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1296
+ +T + ++E+L ++G +KN+T G F+ L +D + +++++ G V+ P
Sbjct: 171 EAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLG-GVDGLLHITDMAWGRVKHPSD 229
Query: 1297 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1356
+G V +VL + KRV + +K ++ E V V G++ +
Sbjct: 230 LLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIE----RRYPVNSRVFGKVTNITD 285
Query: 1357 YGLFITIENTNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1414
YG F+ +E + GL H SEL + NI + ++GE+V+V +L++D+E+RRISLG+K
Sbjct: 286 YGCFVKLEE-GVEGLVHTSELDWTN-KNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIK 343
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 1289 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1348
GY+E E +F I K+ R V +S+R + +TS R A L L G +
Sbjct: 141 GYLEDKEIDFKIIKMDQRRNNVV--VSRRAVMEAETSAERQA------RLEELQEGQEIK 192
Query: 1349 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1408
G IK + YG F+ + + GL H+++++ V + + G++V VK+LK D++K+R
Sbjct: 193 GVIKNITDYGAFVDLGGVD--GLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKR 250
Query: 1409 ISLGMK 1414
+SLGMK
Sbjct: 251 VSLGMK 256
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 114/485 (23%), Positives = 194/485 (40%), Gaps = 85/485 (17%)
Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
T +D++PG +VK V+ V IV G+K+ +P SEF +P VG E
Sbjct: 13 LTETDLRPGALVKATVVEVRPDRVIVN--AGLKSEGIIP-ASEFRNEEP----HVGDEF- 64
Query: 426 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK---IEK-HGCFVRFY 481
F V+ T L + K +++E ++ G + K IE+ G F
Sbjct: 65 FVVIEASDNGFGETR---LSREKARRAKAWSE-LEKAYKAGEMVKGVIIERVKGGFTVDL 120
Query: 482 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTR 535
N V+ F P S + + P +P Y + + +I+ +++ SRR + R
Sbjct: 121 NSVRAFLPGSLVDVKPVRDPG--YLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAER 178
Query: 536 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 594
+ + ++ G + GV+ +T V + G G + +A ++H + + +V
Sbjct: 179 QARLEELQEGQEIKGVIKNITDYGAFVDL---GGVDGLLHITDMAWGRVKHPSDLLNV-- 233
Query: 595 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNII 648
G E ++L D + + L K QL D +P NS V G V NI
Sbjct: 234 -GDEVHVKVLKFDRDKKRVSLGMK--------QLADDPWAKIERRYPVNSRVFGKVTNIT 284
Query: 649 ETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLK 706
+ GCFV+ + G S+ +D ++ SK G+ V +L+++ E RI+L +K
Sbjct: 285 DYGCFVKLEEGVEGLVHTSE-LDWTNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIK 343
Query: 707 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 766
Q C + F ++H E+ I GKV DFG+
Sbjct: 344 Q-CKRNPWQEFAEKHEKDEK--------------------------ITGKVRSITDFGMF 376
Query: 767 VSFEEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFI 818
+ E D+ G + ++ + G +QA IL + + L +K +
Sbjct: 377 IGLE--GDIDGLVHLSDISWTESGEEAIRNYKKGDEVQAVILGIDPERERISLGIKQLEG 434
Query: 819 DRFRE 823
D F E
Sbjct: 435 DPFME 439
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/385 (21%), Positives = 159/385 (41%), Gaps = 63/385 (16%)
Query: 1039 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAVTGH 1094
GQ + G + + + A + + + L I D A+ PS+L ++G V
Sbjct: 188 GQEIKGVIKNITDYGAFVDLG-GVDGLLHITDMAWGRVKHPSDL------LNVGDEVHVK 240
Query: 1095 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1154
VL +++KK + L ++ D K N + F G+++ I G V
Sbjct: 241 VLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVF--------GKVTNITDY--GCFV 290
Query: 1155 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG-TF 1213
++ + G VH +EL + P G+ V+ VLEI R +
Sbjct: 291 KLEEGVEGLVHTSELD----------WTNKNIHPSKVVQSGEEVEVMVLEIDEERRRISL 340
Query: 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1273
++ R+ + + D EKI G V+++T G FI L
Sbjct: 341 GIKQCKRNPWQEFAEKHEKD------------EKI---------TGKVRSITDFGMFIGL 379
Query: 1274 SRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330
+D V LS++S + ES E + + G V +L ++P +R+ + +K +
Sbjct: 380 EGDIDGLVHLSDIS--WTESGEEAIRNYKKGDEVQAVILGIDPERERISLGIK----QLE 433
Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1390
+ + + ++ ++K VES + + + ++G +++ + D V ++
Sbjct: 434 GDPFMEFVESYDKDAVIQAKVKEVESKQAVLELAD-QVLGQMRLADYTYDRVKDLTQELN 492
Query: 1391 AGEKVKVKILKVDKEKRRISLGMKS 1415
G++V VKI+ VD++ R I++ K+
Sbjct: 493 VGDEVAVKIVNVDRKNRLINVSHKA 517
>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsA PE=1 SV=1
Length = 561
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+E+L +++G VKN+T G F+ L +D + +++L+ V+ P + +G+ V +
Sbjct: 187 LENLQEGSVIKGIVKNITDYGAFVDLG-GIDGLLHITDLAWRRVKHPSEVLEVGQEVEAK 245
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1366
VL + +RV + +K + + L+ + G + G++ + YG F+ IE
Sbjct: 246 VLKFDQEKQRVSLGMKQ-----LGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQ- 299
Query: 1367 NLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ GL HVSE+ + + + + + G++V+V IL++D+ +RRISLGMK
Sbjct: 300 GIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMK 348
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1349
+ E E EF + KL R V +S+R + + R A L NL G ++ G
Sbjct: 147 HFEGKEIEFKVIKLDKKRNNVV--VSRRAVLEATLGEERKAL------LENLQEGSVIKG 198
Query: 1350 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
+K + YG F+ + + GL H+++L+ V + + G++V+ K+LK D+EK+R+
Sbjct: 199 IVKNITDYGAFVDLGGID--GLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRV 256
Query: 1410 SLGMK 1414
SLGMK
Sbjct: 257 SLGMK 261
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 9/159 (5%)
Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1316
G V N+T G F+ + + ++ V +S + ++ V P K +G V +L ++ +
Sbjct: 283 GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVH-PSKVVQLGDEVEVMILEIDEGRR 341
Query: 1317 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1376
R+ + +K + + N+ + GD + G +K + +G+F+ + + GL H+S+
Sbjct: 342 RISLGMKQCQANPWEEFAANH----NKGDKISGAVKSITDFGVFVGLPG-GIDGLVHLSD 396
Query: 1377 LS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
LS + + Y+ GE+V+ +L +D EK RISLG+K
Sbjct: 397 LSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIK 435
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 160/373 (42%), Gaps = 41/373 (10%)
Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
FT ++ PG V+ +V+A+D V G+K+ L ++EF+ + + KVG +
Sbjct: 14 FTLQEMNPGEVITAEVVAIDQ--NFVTVNAGLKSES-LIDVAEFKNAQGEIEVKVGDFVT 70
Query: 426 FRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
+ V++ ++ +K + L E D I G I K G V +
Sbjct: 71 VTIESVENGFGETKLSREKAKRAADWIALEEAMENGD--ILSGIINGKVKGGLTV-MISS 127
Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVS 537
++ F P S + + P + S + G+ ++ +++ +++ SRR L + R +
Sbjct: 128 IRAFLPGSLVDVRPVKDTS--HFEGKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKA 185
Query: 538 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 596
+ ++ GS++ G+V +T V + G G + LA ++H + V++ G
Sbjct: 186 LLENLQEGSVIKGIVKNITDYGAFVDL---GGIDGLLHITDLAWRRVKHPS---EVLEVG 239
Query: 597 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCNIIET 650
E + ++L D E + L K QL D + +P + G V N+ +
Sbjct: 240 QEVEAKVLKFDQEKQRVSLGMK--------QLGEDPWSGLTRRYPQGTRLFGKVSNLTDY 291
Query: 651 GCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQS 708
G FV + G S+ +D ++ SK +G V IL+++ RI+L +KQ
Sbjct: 292 GAFVEIEQGIEGLVHVSE-MDWTNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQ- 349
Query: 709 CCSSTDASFMQEH 721
C ++ F H
Sbjct: 350 CQANPWEEFAANH 362
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 159/408 (38%), Gaps = 54/408 (13%)
Query: 65 GQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 123
G+ + V++LD + + R+ L L K L LE +QEG V+ VK+I D+G
Sbjct: 150 GKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKAL-LENLQEGSVIKGIVKNITDYGA 208
Query: 124 ILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 179
+ G G L +LA ++ ++ G ++ V D+ ++ V L
Sbjct: 209 FVDLG--GIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGM------ 260
Query: 180 KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 239
K + +D G + +V ++ + G + G V + + T +
Sbjct: 261 KQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPS 320
Query: 240 NDYNQHKKVNARILFVDPTSRAVGLTL-----NPY----LLHNRAPPSHVKVGDIYDQSK 290
+V IL +D R + L + NP+ HN+ V I D
Sbjct: 321 KVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITD--- 377
Query: 291 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-----EEEVRKLEKKYKEGSCVRVRILGF 345
G+ + +P V +SD++ EE VRK YK+G V +L
Sbjct: 378 -------FGVFVGLPG---GIDGLVHLSDLSWTESGEEAVRK----YKKGEEVEAVVLAI 423
Query: 346 R-HLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 402
E ++ GI L+ F + + G +VKG V +VD+ GA++ V+ P
Sbjct: 424 DVEKERISLGIKQLEGDPFGNFISVND---KGSLVKGSVKSVDAKGAVIALSDEVEGYLP 480
Query: 403 LPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA 450
+ + K K G E+ ++ V K ++ K VK+K A
Sbjct: 481 ASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKNRSI---KLSVKAKDA 525
>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsA PE=1 SV=1
Length = 400
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 6/165 (3%)
Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
L+ +V G V +TS G FI L +D V L+ LS SP+ +G+ + ++L
Sbjct: 191 LAVGDVVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILD 249
Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
+ RV ++LK + E L GD+V G +KR+ +G F+ + + G
Sbjct: 250 LNEEEGRVSLSLKATVPGPWDGVE----QKLAKGDVVEGTVKRLTDFGAFVEV-LPGIDG 304
Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415
L HVS++S ++N + + G++V+VK+L+V+ + R+SL +K+
Sbjct: 305 LVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKA 349
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 153/366 (41%), Gaps = 41/366 (11%)
Query: 361 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 413
FE L+ + S V+ G VV +V+ VD+ A V G GV+ + L ++ + VK
Sbjct: 4 FEDLLNSVSQVETGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADINDFVK 63
Query: 414 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
G+ V LV R V+G + +T K ++++ A + + G T+
Sbjct: 64 VGEVLDV---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118
Query: 473 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 531
K G V F GV+GF P S L D ++ VGQ +I R LS +
Sbjct: 119 KGGLSVEF-EGVRGFIPASML--DTRFVRNAERFVGQEFDTKIKEVNAKENRFILSRREV 175
Query: 532 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-- 589
+ G L G DVVT +A+ S G D L H T +
Sbjct: 176 VEAATAAARAEVFGKLAVG--DVVTGK------VARITSFGAFIDLGGVDGLVHLTELSH 227
Query: 590 ------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVV 640
KSV+ G E + ++L L+ E + LS K ++ P D + VV
Sbjct: 228 ERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATVPG-----PWDGVEQKLAKGDVV 282
Query: 641 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 700
G V + + G FV L + G S+ + + + VGQ V+ +L+VN++ R
Sbjct: 283 EGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAER 342
Query: 701 ITLSLK 706
++LS+K
Sbjct: 343 VSLSIK 348
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 96/198 (48%), Gaps = 34/198 (17%)
Query: 1135 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194
GD+V G++++I S G + +G + G VH TEL + E P S
Sbjct: 194 GDVVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVTV 239
Query: 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1254
G+ ++ K+L+++ V LSL++++ G P +E + L+
Sbjct: 240 GEEIEVKILDLNEE---EGRVSLSLKATVPG---------------PWDGVE--QKLAKG 279
Query: 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
+V+G VK +T G F+ + +D V +S +S +E+P++ +G+ V +VL V
Sbjct: 280 DVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNAD 339
Query: 1315 SKRVEVTLKTSDSRTASQ 1332
++RV +++K + R A +
Sbjct: 340 AERVSLSIKALEERPAQE 357
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 6/169 (3%)
Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
G VV GKV + SFGA + GGV L L +S V P VG E+ ++L +
Sbjct: 194 GDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNE 252
Query: 434 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
+ R++++ K T+ + A+ + G + ++ G FV G+ G S
Sbjct: 253 EEGRVSLSLKATVPGPWDGVEQKLAKGD---VVEGTVKRLTDFGAFVEVLPGIDGLVHVS 309
Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 540
++ P VGQ V+ +++ + R++LS R ++++
Sbjct: 310 QISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERPAQEE 358
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 144/373 (38%), Gaps = 64/373 (17%)
Query: 482 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 541
GV+G EL D + + VG+V+ ++ + +++++ R+
Sbjct: 39 TGVEGVLTLRELTNDRDADINDFVKVGEVLDVLVLRQVVGKDTDTVTYLVSKKRLEARK- 97
Query: 542 VKLGSLVSGVVDVVTPNAVVVYVIAKGYS------KGTIPTEHLADHLEHATVMKSVIKP 595
LV +VVT + G S +G IP A L+ V +
Sbjct: 98 -AWDKLVGREEEVVTVKGT--RAVKGGLSVEFEGVRGFIP----ASMLDTRFVRNAERFV 150
Query: 596 GYEFDQLLVLDNESSN-LLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 653
G EFD + N N +LS + + + ++ + VV G V I G F
Sbjct: 151 GQEFDTKIKEVNAKENRFILSRREVVEAATAAARAEVFGKLAVGDVVTGKVARITSFGAF 210
Query: 654 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 713
+ LG + G ++ + VG+ + ILD+N E GR++LSLK +
Sbjct: 211 ID-LGGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATVPGPW 269
Query: 714 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 773
D +E+K+A G V+EG V DFG V E
Sbjct: 270 DG--------VEQKLAK-------------------GDVVEGTVKRLTDFGAFV--EVLP 300
Query: 774 DVYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVFIDRFREAN 825
+ G + Q++ +E+ G +Q +L+V A AER V LS+K A
Sbjct: 301 GIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAER-VSLSIK---------AL 350
Query: 826 SNRQAQKKKRKRE 838
R AQ++ +K E
Sbjct: 351 EERPAQEEGQKEE 363
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
L VGD+V G++ R+ S+G FI + + GL H++ELS + + +++ GE+++V
Sbjct: 188 FGKLAVGDVVTGKVARITSFGAFIDLGGVD--GLVHLTELSHERNVSPKSVVTVGEEIEV 245
Query: 1398 KILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEESDEAIEEVGSYNR--------SSL 1448
KIL +++E+ R+SL +K++ D +++ + + ++ + + L
Sbjct: 246 KILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGL 305
Query: 1449 LENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQ 1491
+ S ++ + ++ E +L + Q V LEVN D E+
Sbjct: 306 VHVSQISHKRIENPKE---ALKVGQ---EVQVKVLEVNADAER 342
>sp|Q9ZD28|RS1_RICPR 30S ribosomal protein S1 OS=Rickettsia prowazekii (strain Madrid E)
GN=rpsA PE=3 SV=1
Length = 568
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 156/362 (43%), Gaps = 24/362 (6%)
Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
IL+ S E S +K G+V++G V + +GA + G V L L +S + P
Sbjct: 186 ILEESRSEARDEMLSKIKEGIVLEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHP 244
Query: 415 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
+ + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKK---MTGKVTNFA 301
Query: 473 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531
+G F+ +G++G SE+ L P M +GQ V+ ++ R++LS
Sbjct: 302 DYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSI-- 359
Query: 532 KPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 585
+ E+ L+K +G+++ + +T + +V+ G I ++
Sbjct: 360 --KQCQENPLIKFAENNPIGTIIKAPIRNITDFGI--FVVLGNNMDGMIHEGDISWEDNG 415
Query: 586 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 644
++KS K G E + ++L ++ E + L K L N Q++ + +++V V
Sbjct: 416 TDLLKSY-KKGDEIECKVLAINFEKEQVSLGIKQLLPNPYQKI---SDEYKKSTIVKAVV 471
Query: 645 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
I + G V ++TGF R + D + + + V + + + ++ + TGR+ LS
Sbjct: 472 TEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFKVHEEIDAKVVSIEKSTGRVLLS 531
Query: 705 LK 706
+K
Sbjct: 532 IK 533
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 136/612 (22%), Positives = 248/612 (40%), Gaps = 107/612 (17%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
S +K VVKG+VI + + IV G+K +P + + G +V E ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLSLPEVGDVVEVFIE---KI 88
Query: 429 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 542
F P S++ + P +P+S+ ++ Q K + + +I SRR+ L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKI 202
Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 598
K G ++ GVV +T + + G G + HL D + H + + E
Sbjct: 203 KEGIVLEGVVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249
Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 651
F+Q ++ D ++ + L K N P DA + G V N + G
Sbjct: 250 FNQKVKVMVIKFDEKTKRISLGIKQLDSN-----PWDAIKEEFPVGKKMTGKVTNFADYG 304
Query: 652 CFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710
F+ L G S+ + + K +GQ V +L+V++E R++LS+KQ C
Sbjct: 305 VFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQ-C- 362
Query: 711 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 770
QE+ L +K+ E IG++I+ + DFG+ V
Sbjct: 363 --------QENPL-----------------IKFAENNPIGTIIKAPIRNITDFGIFVVLG 397
Query: 771 EHSDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
+ D G I ++ + + G I+ +L + + V L +K + + ++
Sbjct: 398 NNMD--GMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLLPNPYQ 455
Query: 823 EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 882
+ + + V A+V +K++ LV+ L N G+ + +
Sbjct: 456 KISDEYKKS---------------TIVKAVVTEIKDDGLVVLL--NNKVTGFIKRVELSD 498
Query: 883 QKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDV 938
+K QK F + + A V+++ S+ GR+LL +KA I+E + + + ++ ++
Sbjct: 499 EKDEQKPEMFKVHEEIDAKVVSIEKST--GRVLLSIKAHKIAERQKTLKEYGSSDNTTNM 556
Query: 939 GSLVQAEITEIK 950
G ++ + E K
Sbjct: 557 GDILANVLEEKK 568
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1315
G V N G F+ L L+ V S +S +++S P K IG+ V VL V+
Sbjct: 295 GKVTNFADYGVFLELKDGLEGLVHSSEIS--WLKSNQNPRKMLTIGQEVEFIVLEVDTEK 352
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
RV +++K + NN +G I+ I+ + +G+F+ + N N+ G+ H
Sbjct: 353 HRVSLSIKQCQENPLIKFAENN----PIGTIIKAPIRNITDFGIFVVLGN-NMDGMIHEG 407
Query: 1376 ELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
++S ED+ ++ Y+ G++++ K+L ++ EK ++SLG+K
Sbjct: 408 DISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIK 447
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
+SR+ ++ E+ LS + G ++ G +K + YG FI + + + GL H++++S V++
Sbjct: 189 ESRSEARDEM--LSKIKEGIVLEGVVKNITDYGAFIDLGSVD--GLLHLTDISWGRVNHP 244
Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ +KVKV ++K D++ +RISLG+K
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIK 273
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 121/287 (42%), Gaps = 41/287 (14%)
Query: 1038 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1097
+G+++TG V + L + L+ + + ++ S Q ++ IG+ V VL
Sbjct: 289 VGKKMTGKVTNFADYGVFLELKDGLEGLVHSSEISWLKSN-QNPRKMLTIGQEVEFIVLE 347
Query: 1098 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1157
++ EK + L ++ Q+ + + + +N G I+ I I G+ V +G
Sbjct: 348 VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PIGTIIKAPIRNITDF--GIFVVLG 397
Query: 1158 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1217
++ G +H ++ +++ D L Y +G ++CKVL I+ V L
Sbjct: 398 NNMDGMIHEGDI----------SWEDNGTDLLKSYKKGDEIECKVLAINFEKE---QVSL 444
Query: 1218 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
++ L P + + ++ + IV+ V + G ++L+ K+
Sbjct: 445 GIKQLL-----------------PNPYQKISDEYKKSTIVKAVVTEIKDDGLVVLLNNKV 487
Query: 1278 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
+ LSD E + F + + + +V+S+E + RV +++K
Sbjct: 488 TGFIKRVELSDEKDEQKPEMFKVHEEIDAKVVSIEKSTGRVLLSIKA 534
>sp|Q895G2|ISPH_CLOTE 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
tetani (strain Massachusetts / E88) GN=ispH PE=3 SV=1
Length = 635
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1310
L + I +G V+ +T G F+ ++ +D + +S +S G VE P +G + +
Sbjct: 473 LEKDTIKEGEVRRLTDFGAFVNIN-GVDGLLHVSEISWGRVEKPSDMLKVGDKIKVYIKD 531
Query: 1311 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370
++ K++ +++K E+ VG+IV+G + R S+G F+ +E + G
Sbjct: 532 IDKDKKKLALSIKDLTKDPWKDVEVK----YPVGNIVLGTVVRFASFGAFVELE-PGVDG 586
Query: 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
L H+S++S VD +E GE+VK KI++VD EKR+I L +K
Sbjct: 587 LIHISQISHKRVDRVEDELSIGEQVKAKIVEVDGEKRKIGLSIK 630
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 1331 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1390
S+ E S+L I G+++R+ +G F+ I + GL HVSE+S V+ + +
Sbjct: 463 SKVEEETWSSLEKDTIKEGEVRRLTDFGAFVNINGVD--GLLHVSEISWGRVEKPSDMLK 520
Query: 1391 AGEKVKV 1397
G+K+KV
Sbjct: 521 VGDKIKV 527
>sp|Q68WL4|RS1_RICTY 30S ribosomal protein S1 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpsA PE=3 SV=1
Length = 568
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 154/362 (42%), Gaps = 24/362 (6%)
Query: 355 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414
IL+ S E S +K GM+++G V + +GA + G V L L +S + P
Sbjct: 186 ILEESRSEARDEMLSKIKEGMILEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHP 244
Query: 415 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 472
+ + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKK---MTGKVTNFA 301
Query: 473 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531
+G F+ +G++G SE+ L P M +GQ V+ ++ R++LS
Sbjct: 302 DYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSI-- 359
Query: 532 KPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 585
+ E+ L+K +G+++ + +T + +V+ G I ++
Sbjct: 360 --KQCQENPLIKFAENNPIGTIIKAPIRNITDFGI--FVVLGNNMDGMIHEGDISWEDNG 415
Query: 586 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 644
++KS K G E + ++L ++ E + L K N Q++ + ++V V
Sbjct: 416 TDLLKSY-KKGDEIECKVLAINFEKEQVSLGIKQLSPNPYQKI---SDEYKKGTIVKAVV 471
Query: 645 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704
I + G V ++TGF R + D + + + V + + + ++ + TGR+ LS
Sbjct: 472 TEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFQVDEEIDAKVVSIEKSTGRVLLS 531
Query: 705 LK 706
+K
Sbjct: 532 VK 533
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1315
G V N G F+ L L+ V S +S +++S P K IG+ V VL V+
Sbjct: 295 GKVTNFADYGVFLELKDGLEGLVHSSEIS--WLKSNQNPRKMLTIGQEVEFIVLEVDTEK 352
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
RV +++K + NN +G I+ I+ + +G+F+ + N N+ G+ H
Sbjct: 353 HRVSLSIKQCQENPLIKFAENN----PIGTIIKAPIRNITDFGIFVVLGN-NMDGMIHEG 407
Query: 1376 ELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
++S ED+ ++ Y+ G++++ K+L ++ EK ++SLG+K
Sbjct: 408 DISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIK 447
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 136/612 (22%), Positives = 248/612 (40%), Gaps = 107/612 (17%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
S +K VVKG+VI + + IV G+K +P + + G +V E ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLSLPEVGDVVEVFIE---KI 88
Query: 429 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 542
F P S++ + P +P+S+ ++ Q K + + +I SRR+ L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKI 202
Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 598
K G ++ GVV +T + + G G + HL D + H + + E
Sbjct: 203 KEGMILEGVVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249
Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 651
F+Q ++ D ++ + L K N P DA + G V N + G
Sbjct: 250 FNQKVKVMVIKFDEKTKRISLGIKQLDSN-----PWDAIKEEFPVGKKMTGKVTNFADYG 304
Query: 652 CFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710
F+ L G S+ + + K +GQ V +L+V++E R++LS+KQ C
Sbjct: 305 VFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQ-C- 362
Query: 711 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 770
QE+ L +K+ E IG++I+ + DFG+ V
Sbjct: 363 --------QENPL-----------------IKFAENNPIGTIIKAPIRNITDFGIFVVLG 397
Query: 771 EHSDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 822
+ D G I ++ + + G I+ +L + + V L +K + + ++
Sbjct: 398 NNMD--GMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLSPNPYQ 455
Query: 823 EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 882
+ + + V A+V +K++ LV+ L N G+ + +
Sbjct: 456 KISDEYKK---------------GTIVKAVVTEIKDDGLVVLL--NNKVTGFIKRVELSD 498
Query: 883 QKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDV 938
+K QK F + + A V+++ S+ GR+LL +KA I+E + + + ++ ++
Sbjct: 499 EKDEQKPEMFQVDEEIDAKVVSIEKST--GRVLLSVKAHKIAERQKTLKEYGSSDNTTNM 556
Query: 939 GSLVQAEITEIK 950
G ++ + E K
Sbjct: 557 GDILANVLEEKK 568
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
+SR+ ++ E+ LS + G I+ G +K + YG FI + + + GL H++++S V++
Sbjct: 189 ESRSEARDEM--LSKIKEGMILEGVVKNITDYGAFIDLGSVD--GLLHLTDISWGRVNHP 244
Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ +KVKV ++K D++ +RISLG+K
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIK 273
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 56/287 (19%), Positives = 120/287 (41%), Gaps = 41/287 (14%)
Query: 1038 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1097
+G+++TG V + L + L+ + + ++ S Q ++ IG+ V VL
Sbjct: 289 VGKKMTGKVTNFADYGVFLELKDGLEGLVHSSEISWLKSN-QNPRKMLTIGQEVEFIVLE 347
Query: 1098 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1157
++ EK + L ++ Q+ + + + +N G I+ I I G+ V +G
Sbjct: 348 VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PIGTIIKAPIRNITDF--GIFVVLG 397
Query: 1158 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1217
++ G +H ++ +++ D L Y +G ++CKVL I+ V L
Sbjct: 398 NNMDGMIHEGDI----------SWEDNGTDLLKSYKKGDEIECKVLAINFEKE---QVSL 444
Query: 1218 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
++ +P + + ++ IV+ V + G ++L+ K+
Sbjct: 445 GIKQL-----------------SPNPYQKISDEYKKGTIVKAVVTEIKDDGLVVLLNNKV 487
Query: 1278 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
+ LSD E + F + + + +V+S+E + RV +++K
Sbjct: 488 TGFIKRVELSDEKDEQKPEMFQVDEEIDAKVVSIEKSTGRVLLSVKA 534
>sp|Q4ULF1|RS1_RICFE 30S ribosomal protein S1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rpsA PE=3 SV=1
Length = 568
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 76/363 (20%), Positives = 153/363 (42%), Gaps = 24/363 (6%)
Query: 354 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 413
IL+ S E S +K GMV++G V + +GA + G V L L +S +
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243
Query: 414 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 471
P + + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKK---MTGKVTNF 300
Query: 472 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 530
+G F+ +G++G SE+ L P +GQ V+ ++ R++LS
Sbjct: 301 ADYGVFIELRDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSI- 359
Query: 531 MKPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 584
+ E+ L+K +G+++ + +T + +V G I ++ +
Sbjct: 360 ---KQCQENPLIKFAENNPVGTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDK 414
Query: 585 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 643
++KS K G E + ++L ++ E + L K N Q++ + ++V
Sbjct: 415 GTDLLKSY-KKGDEIECKVLAINIEKEQVSLGVKQLSPNPYQEI---SDEYKKGTIVKAL 470
Query: 644 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703
+ + + G V ++ GF R++ D + + + + + + + ++ + TGRI L
Sbjct: 471 ITEVKDDGLEVLLNNKVAGFIKRTELSDEKDEQKPEMFKIDEEIEAKVVSIEKSTGRILL 530
Query: 704 SLK 706
S+K
Sbjct: 531 SVK 533
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1315
G V N G FI L L+ V S +S +++S P K IG+ V VL V+
Sbjct: 295 GKVTNFADYGVFIELRDGLEGLVHSSEIS--WLKSNQNPRKTLTIGQEVEFVVLEVDTEK 352
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
RV +++K + NN VG I+ I+ + +G+F+ + N N+ G+ H
Sbjct: 353 HRVSLSIKQCQENPLIKFAENN----PVGTIIKAPIRNITDFGIFVALGN-NMDGMIHEG 407
Query: 1376 ELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
++S ED ++ Y+ G++++ K+L ++ EK ++SLG+K
Sbjct: 408 DISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGVK 447
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 130/602 (21%), Positives = 245/602 (40%), Gaps = 103/602 (17%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
S +K VVKG+VI + + IV G+K +P + + G +V + ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDMVIVDV--GLKNEGRIPKSEFLALPEVGDVVEV---FIEKI 88
Query: 429 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 542
F P S++ + P +P+S+ ++ Q K + + +I SRR L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLDNIVVSRRAILEESRSEARDEMLSKI 202
Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 598
K G ++ G V +T + + G G + HL D + H + + E
Sbjct: 203 KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249
Query: 599 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 653
F+Q ++ D ++ + L K N + + + + G V N + G F
Sbjct: 250 FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEE---FPVGKKMTGKVTNFADYGVF 306
Query: 654 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 712
+ L G S+ + + KT +GQ V +L+V++E R++LS+KQ C
Sbjct: 307 IELRDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362
Query: 713 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 772
QE+ L +K+ E +G++I+ + DFG+ V+ +
Sbjct: 363 ------QENPL-----------------IKFAENNPVGTIIKAPIRNITDFGIFVALGNN 399
Query: 773 SDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 824
D G I ++ + + G I+ +L + + V L +K + + +
Sbjct: 400 MD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGVKQLSPNPY--- 454
Query: 825 NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 884
+E S + V A++ VK++ L + L N G+ ++ + +K
Sbjct: 455 ------------QEISDEYKKGTIVKALITEVKDDGLEVLL--NNKVAGFIKRTELSDEK 500
Query: 885 FPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGS 940
QK F + + A V+++ S+ GR+LL +KA I+E + + + ++ ++G
Sbjct: 501 DEQKPEMFKIDEEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGD 558
Query: 941 LV 942
++
Sbjct: 559 IL 560
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
+SR+ ++ E+ LS + G ++ G +K + YG FI + + + GL H++++S V++
Sbjct: 189 ESRSEARDEM--LSKIKEGMVLEGTVKNITDYGAFIDLGSVD--GLLHLTDISWGRVNHP 244
Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ +KVKV ++K D++ +RISLG+K
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIK 273
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 121/287 (42%), Gaps = 41/287 (14%)
Query: 1038 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1097
+G+++TG V + + + L+ + + ++ S Q ++ IG+ V VL
Sbjct: 289 VGKKMTGKVTNFADYGVFIELRDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347
Query: 1098 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1157
++ EK + L ++ Q+ + + + +N G I+ I I G+ V +G
Sbjct: 348 VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PVGTIIKAPIRNITDF--GIFVALG 397
Query: 1158 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1217
++ G +H +S D+G D L Y +G ++CKVL I+ V L
Sbjct: 398 NNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDEIECKVLAINIEKE---QVSL 444
Query: 1218 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1277
++ +P + E ++ IV+ + V G ++L+ K+
Sbjct: 445 GVKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDDGLEVLLNNKV 487
Query: 1278 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
+ + LSD E + F I + + +V+S+E + R+ +++K
Sbjct: 488 AGFIKRTELSDEKDEQKPEMFKIDEEIEAKVVSIEKSTGRILLSVKA 534
>sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1A PE=3 SV=1
Length = 328
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397
++ L V +V+G ++ ++ YG FI I + GL H+SE+S DH+D +++ +++KV
Sbjct: 190 MNGLEVAQVVVGSVRGIKPYGAFIDIGGVS--GLLHISEISHDHIDTPHSVFNVNDEIKV 247
Query: 1398 KILKVDKEKRRISLGMK 1414
I+ +D E+ RISL K
Sbjct: 248 MIIDLDAERGRISLSTK 264
>sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1
PE=1 SV=1
Length = 411
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 1336 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1395
++ + L +G +V G ++ ++ YG FI I N GL HVS++S D V +I T+ + G+ +
Sbjct: 253 DSQAQLGIGSVVTGTVQSLKPYGAFIDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTL 310
Query: 1396 KVKILKVDKEKRRISLGMK 1414
KV IL D+E+ R+SL K
Sbjct: 311 KVMILSHDRERGRVSLSTK 329
>sp|Q92HM4|RS1_RICCN 30S ribosomal protein S1 OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=rpsA PE=3 SV=1
Length = 568
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1315
G V N G FI L L+ V S +S +++S P K IG+ V VL V+
Sbjct: 295 GKVTNFADYGVFIELKDGLEGLVHSSEIS--WLKSNQNPRKTLTIGQEVEFVVLEVDTEK 352
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1375
RV +++K ++ NN VG I+ I+ + +G+F+ + N N+ G+ H
Sbjct: 353 HRVSLSIKQCQENPLTKFAENN----PVGTIIKAPIRNITDFGIFVALGN-NMDGMIHEG 407
Query: 1376 ELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
++S ED ++ Y+ G++++ K+L ++ EK ++SLG+K
Sbjct: 408 DISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIK 447
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 153/361 (42%), Gaps = 20/361 (5%)
Query: 354 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 413
IL+ S E S +K GMV++G V + +GA + G V L L +S +
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243
Query: 414 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 471
P + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 244 PSEVLDFNQKVKVMVIKFDEKNKRISLGIKQLDSNPWEAIKEEFPVGKQ---MTGKVTNF 300
Query: 472 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 530
+G F+ +G++G SE+ L P +GQ V+ ++ R++LS
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIK 360
Query: 531 M---KP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 586
P T+ +E++ V G+++ + +T + +V G I ++ +
Sbjct: 361 QCQENPLTKFAENNPV--GTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDKGT 416
Query: 587 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 645
++KS K G E + ++L ++ E + L K N Q++ + ++V +
Sbjct: 417 DLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI---SDEYKKGTIVKALIT 472
Query: 646 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
+ + G V ++ GF R++ D + + + + + + + ++ + TGRI LS+
Sbjct: 473 EVKDEGLEVLLNDKVAGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSV 532
Query: 706 K 706
K
Sbjct: 533 K 533
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 131/601 (21%), Positives = 245/601 (40%), Gaps = 101/601 (16%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
S +K VVKG+VI + + IV G+K +P + + G +V + ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDIIIVDV--GLKNEGRIPKSEFLALPEVGDVVEV---FIEKI 88
Query: 429 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 542
F P S++ + P +P+S+ ++ Q K + + +I SRR L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202
Query: 543 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 598
K G ++ G V +T + + G G + HL D + H + + +
Sbjct: 203 KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LD 249
Query: 599 FDQ---LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 653
F+Q ++V+ + N +S ++S P +A + G V N + G F
Sbjct: 250 FNQKVKVMVIKFDEKNKRISLGIKQLDSN---PWEAIKEEFPVGKQMTGKVTNFADYGVF 306
Query: 654 VRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
+ L G S + +++ + KT +GQ V +L+V++E R++LS+KQ C
Sbjct: 307 IELKDGLEGLV-HSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C-- 362
Query: 712 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 771
QE+ L K+ E +G++I+ + DFG+ V+
Sbjct: 363 -------QENPL-----------------TKFAENNPVGTIIKAPIRNITDFGIFVALGN 398
Query: 772 HSDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
+ D G I ++ + + G I+ +L + + V L +K + + ++E
Sbjct: 399 NMD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQE 456
Query: 824 ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 883
+ +K K L I E+ E VL + I +SD +
Sbjct: 457 ISDEY------KKGTIVKAL--------ITEVKDEGLEVLLNDKVAGFIKRTELSDEKDE 502
Query: 884 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGSL 941
+ P+ F + + A V+++ S+ GR+LL +KA I+E + + + ++ ++G +
Sbjct: 503 QKPE-MFQIDKEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGDI 559
Query: 942 V 942
+
Sbjct: 560 L 560
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
+SR+ ++ E+ LS + G ++ G +K + YG FI + + + GL H++++S V++
Sbjct: 189 ESRSEARDEM--LSKIKEGMVLEGTVKNITDYGAFIDLGSVD--GLLHLTDISWGRVNHP 244
Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ +KVKV ++K D++ +RISLG+K
Sbjct: 245 SEVLDFNQKVKVMVIKFDEKNKRISLGIK 273
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 121/289 (41%), Gaps = 45/289 (15%)
Query: 1038 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1097
+G+++TG V + + + L+ + + ++ S Q ++ IG+ V VL
Sbjct: 289 VGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347
Query: 1098 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQ 1155
++ EK + L ++ Q+ N T E + VG I + + G+ V
Sbjct: 348 VDTEKHRVSLSIKQCQE------------NPLTKFAENNPVGTIIKAPIRNITDFGIFVA 395
Query: 1156 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1215
+G ++ G +H +S D+G D L Y +G ++CKVL I+ V
Sbjct: 396 LGNNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDEIECKVLAINIEKE---QV 442
Query: 1216 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1275
L ++ +P + E ++ IV+ + V +G ++L+
Sbjct: 443 SLGIKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDEGLEVLLND 485
Query: 1276 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324
K+ + + LSD E + F I K + +V+S+E + R+ +++K
Sbjct: 486 KVAGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSVKA 534
>sp|Q48082|RS1_HAEIN 30S ribosomal protein S1 OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=rpsA PE=3 SV=1
Length = 549
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 13/166 (7%)
Query: 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSV 1311
N + G V N+T GCF+ + ++ V +S + ++ + P K +G V VL +
Sbjct: 277 NSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIH-PSKVVSLGDTVEVMVLEI 335
Query: 1312 EPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVG 1370
+ +R+ + LK + +Q ++ H GD V G+IK + +G+FI +E + G
Sbjct: 336 DEERRRISLGLKQCKANPWTQ-----FADTHNKGDKVTGKIKSITDFGIFIGLEG-GIDG 389
Query: 1371 LCHVSELSEDHVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMK 1414
L H+S++S + E + Y+ G++V +L VD K RISLG+K
Sbjct: 390 LVHLSDISW-SISGEEAVRQYKKGDEVSAVVLAVDAVKERISLGIK 434
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 11/170 (6%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+E+L V+G VKN+T G F+ L +D + +++++ V+ P + +G V +
Sbjct: 186 LENLVEGSEVKGVVKNLTEYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEVTVK 244
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1366
VL + RV + LK Q ++ H V + G++ + YG F+ I +
Sbjct: 245 VLKFDKDRTRVSLGLKQ-----LGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFVEILD- 298
Query: 1367 NLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ GL HVSE+ + NI + G+ V+V +L++D+E+RRISLG+K
Sbjct: 299 GVEGLVHVSEMDWTN-KNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLK 347
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 374 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 433
G VKG V + +GA V GGV L + M+ + P + VG E+ +VL
Sbjct: 192 GSEVKGVVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDK 250
Query: 434 KRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 492
R V+ K L + A ++ +L G +T + +GCFV +GV+G SE
Sbjct: 251 DRTRVSLGLKQLGQDPWAAIAENHPVNSKLT--GKVTNLTDYGCFVEILDGVEGLVHVSE 308
Query: 493 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
+ + PS + +G V+ ++ RRI+L
Sbjct: 309 MDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGL 346
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 1295 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1354
E + +GK + +V+ ++ V V+ + SQ L NL G V G +K +
Sbjct: 143 EADHLLGKELEFKVIKLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNL 202
Query: 1355 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
YG F+ + + GL H+++++ V + I G++V VK+LK DK++ R+SLG+K
Sbjct: 203 TEYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLK 260
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 148/365 (40%), Gaps = 59/365 (16%)
Query: 475 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 528
G F NGV+ F P S + P E + +G+ ++ +++ +++ SRR +
Sbjct: 118 GGFTVELNGVRAFLPGSLVDTRPAREADHL--LGKELEFKVIKLDQKRNNVVVSRRAVIE 175
Query: 529 FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 587
R + + GS V GVV +T V + G G + +A ++H +
Sbjct: 176 SENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDL---GGVDGLLHITDMAWKRVKHPS 232
Query: 588 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVC 645
++ G E ++L D + + + L K Q + + HP NS + G V
Sbjct: 233 ---EIVNVGDEVTVKVLKFDKDRTRVSLGLK----QLGQDPWAAIAENHPVNSKLTGKVT 285
Query: 646 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITL 703
N+ + GCFV L + G S+ +D ++ SK +G +V +L+++ E RI+L
Sbjct: 286 NLTDYGCFVEILDGVEGLVHVSE-MDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISL 344
Query: 704 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 763
LKQ C ++ F + HN G + GK+ DF
Sbjct: 345 GLKQ-CKANPWTQF---------------ADTHNK-----------GDKVTGKIKSITDF 377
Query: 764 GVVVSFE-------EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 816
G+ + E SD+ I+ + A + G + A +L V + + L +K +
Sbjct: 378 GIFIGLEGGIDGLVHLSDISWSISGEE-AVRQYKKGDEVSAVVLAVDAVKERISLGIKQL 436
Query: 817 FIDRF 821
D F
Sbjct: 437 EEDPF 441
>sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1
PE=3 SV=2
Length = 263
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 68/113 (60%), Gaps = 9/113 (7%)
Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
K + ++L+VE S + ++ + + AS SNL VG+I+ G I ++ YGLFI
Sbjct: 157 KFIKLKLLNVEEKSNNLILSHRRALISQAS-------SNLIVGNIIEGIINQITPYGLFI 209
Query: 1362 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ NL GL H+SE++ +++ I + ++ G+ +K I+ VDK++ R+SL MK
Sbjct: 210 KV--GNLKGLVHISEINIKNLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMK 260
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 23/155 (14%)
Query: 564 VIAKGYSKGT-----------IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 612
V+ KG++KG +P HL + + IK +LL ++ +S+NL
Sbjct: 119 VMIKGFNKGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKL-----KLLNVEEKSNNL 173
Query: 613 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 672
+LS + +LI+ A +S++ +++ G + I G F++ +G L G S+
Sbjct: 174 ILSHRRALISQA------SSNLIVGNIIEGIINQITPYGLFIK-VGNLKGLVHISEINIK 226
Query: 673 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707
+S + +G ++++ I+ V+ + GR++LS+K
Sbjct: 227 NLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMKH 261
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 926 SSKRA---KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 982
S +RA + S+ VG++++ I +I P L +K G G +HI+E+N +E +
Sbjct: 176 SHRRALISQASSNLIVGNIIEGIINQITPYGLFIKVG-NLKGLVHISEINIKN---LEQI 231
Query: 983 FSNFKIGQTVTARII 997
S FKIG T+ A II
Sbjct: 232 SSQFKIGDTIKAVII 246
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/254 (19%), Positives = 116/254 (45%), Gaps = 20/254 (7%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
D+ G +V G + + + G +V + A P+ +S + + + F +L
Sbjct: 23 DLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNNFTSLNINDTREFFLL 82
Query: 430 --GVKSKRITVTHKKT-LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 486
++SK++ ++ ++ +++ I AE + + + I K G + G+ G
Sbjct: 83 DYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDS---LLNVMIKGFNKGGMIINL-EGISG 138
Query: 487 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGS 546
F P S LG + S ++ + +K ++++ S + LS + +L+ +G+
Sbjct: 139 FVPNSHLG---NFQKSEQFN-NKFIKLKLLNVEEKSNNLILSHRRALISQASSNLI-VGN 193
Query: 547 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV- 604
++ G+++ +TP + + V G KG + H+++ ++++ + S K G +++
Sbjct: 194 IIEGIINQITPYGLFIKV---GNLKGLV---HISEINIKNLEQISSQFKIGDTIKAVIIH 247
Query: 605 LDNESSNLLLSAKY 618
+D + L LS K+
Sbjct: 248 VDKKQGRLSLSMKH 261
>sp|P51345|RR1_PORPU 30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1
PE=3 SV=1
Length = 263
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 1339 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1398
SNL VG+I+ G I ++ YGLFI + NL GL H+SE++ V+ I + ++ G+ +K
Sbjct: 187 SNLIVGNIIEGVINQITPYGLFI--KAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAV 244
Query: 1399 ILKVDKEKRRISLGMK 1414
I+ VDK++ R+SL MK
Sbjct: 245 IIHVDKKQGRLSLSMK 260
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 572 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 631
G +P HL + ++ + IK +LL ++ +S+NL+LS + +LI A +
Sbjct: 138 GFVPNSHLNNFSKNTSSTNKFIKL-----KLLNVEEKSNNLILSHRRALIAQA------S 186
Query: 632 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 691
S++ +++ G + I G F++ G L G S+ Q + + +G ++++ I
Sbjct: 187 SNLIVGNIIEGVINQITPYGLFIK-AGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVI 245
Query: 692 LDVNSETGRITLSLKQ 707
+ V+ + GR++LS+K
Sbjct: 246 IHVDKKQGRLSLSMKH 261
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 930 AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 989
A+ S+ VG++++ I +I P L +K G G +HI+E+N + VE + S FKIG
Sbjct: 183 AQASSNLIVGNIIEGVINQITPYGLFIKAG-NLKGLVHISEINVKQ---VERIPSQFKIG 238
Query: 990 QTVTARII 997
T+ A II
Sbjct: 239 DTIKAVII 246
>sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1
Length = 557
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1315
V+G +K++T G FI L +D V LS++S E +E+ G +A VL V+
Sbjct: 367 VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
+R+ + +K ++ NN L+ G IV G++ V++ G + + + + G
Sbjct: 427 ERISLGVKQ-----LAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRA 480
Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1432
SE S D V++ + G++V+ K VD++ R ISL +++ ++ D + +++E
Sbjct: 481 SEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQE 538
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 245 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 299
Query: 1368 LVGLCHVSELSEDHVDNI--ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1349
++E E EF + KL R V +S+R + + S R L NL G V G
Sbjct: 146 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESENSAERDQL------LENLQEGMEVKG 197
Query: 1350 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255
Query: 1410 SLGMK 1414
SLG+K
Sbjct: 256 SLGLK 260
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 157
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 158 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 211
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 212 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 266
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 267 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 323 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 439
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 415
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 416 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 469
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 530 MMK 532
K
Sbjct: 520 RAK 522
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 186/473 (39%), Gaps = 69/473 (14%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 430 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 489
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
S + + P +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRP--VRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 656
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 657 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 775 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 821
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA
PE=1 SV=1
Length = 557
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1315
V+G +K++T G FI L +D V LS++S E +E+ G +A VL V+
Sbjct: 367 VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
+R+ + +K ++ NN L+ G IV G++ V++ G + + + + G
Sbjct: 427 ERISLGVKQ-----LAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRA 480
Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1432
SE S D V++ + G++V+ K VD++ R ISL +++ ++ D + +++E
Sbjct: 481 SEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQE 538
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 245 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 299
Query: 1368 LVGLCHVSELSEDHVDNI--ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1349
++E E EF + KL R V +S+R + + S R L NL G V G
Sbjct: 146 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESENSAERDQL------LENLQEGMEVKG 197
Query: 1350 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255
Query: 1410 SLGMK 1414
SLG+K
Sbjct: 256 SLGLK 260
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 157
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 158 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 211
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 212 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 266
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 267 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 323 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 439
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 415
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 416 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 469
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 530 MMK 532
K
Sbjct: 520 RAK 522
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 186/473 (39%), Gaps = 69/473 (14%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 430 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 489
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
S + + P +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRP--VRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 656
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 657 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 775 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 821
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=rpsA PE=3 SV=1
Length = 557
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1315
V+G +K++T G FI L +D V LS++S E +E+ G +A VL V+
Sbjct: 367 VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
+R+ + +K ++ NN L+ G IV G++ V++ G + + + + G
Sbjct: 427 ERISLGVKQ-----LAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRA 480
Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1432
SE S D V++ + G++V+ K VD++ R ISL +++ ++ D + +++E
Sbjct: 481 SEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQE 538
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 245 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 299
Query: 1368 LVGLCHVSELSEDHVDNI--ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1349
++E E EF + KL R V +S+R + + S R L NL G V G
Sbjct: 146 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESENSAERDQL------LENLQEGMEVKG 197
Query: 1350 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255
Query: 1410 SLGMK 1414
SLG+K
Sbjct: 256 SLGLK 260
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 157
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 158 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 211
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 212 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 266
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 267 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 323 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 439
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 415
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 416 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 469
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 530 MMK 532
K
Sbjct: 520 RAK 522
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 186/473 (39%), Gaps = 69/473 (14%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 430 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 489
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
S + + P +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRP--VRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 656
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 657 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 775 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 821
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3
SV=1
Length = 557
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1315
V+G +K++T G FI L +D V LS++S E +E+ G +A VL V+
Sbjct: 367 VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
+R+ + +K ++ NN L+ G IV G++ V++ G + + + + G
Sbjct: 427 ERISLGVKQ-----LAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRA 480
Query: 1375 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1432
SE S D V++ + G++V+ K VD++ R ISL +++ ++ D + +++E
Sbjct: 481 SEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQE 538
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 245 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 299
Query: 1368 LVGLCHVSELSEDHVDNI--ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1349
++E E EF + KL R V +S+R + + S R L NL G V G
Sbjct: 146 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESENSAERDQL------LENLQEGMEVKG 197
Query: 1350 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255
Query: 1410 SLGMK 1414
SLG+K
Sbjct: 256 SLGLK 260
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 157
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 158 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 211
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 212 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 266
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 267 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 323 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 383 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 439
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 415
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 416 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 469
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 470 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 530 MMK 532
K
Sbjct: 520 RAK 522
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 186/473 (39%), Gaps = 69/473 (14%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 430 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 489
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 490 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 543
S + + P +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRP--VRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 544 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 601
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 602 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 656
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 657 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 714
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 715 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 774
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 775 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 821
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|Q6NDP1|RS1_RHOPA 30S ribosomal protein S1 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rpsA PE=1 SV=1
Length = 565
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 7/172 (4%)
Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
E +++L ++ G VKN+T G F+ L +D + +++++ V P + IG+ V
Sbjct: 193 ELVQNLEEGQVIDGVVKNITDYGAFVDLG-GIDGLLHVTDIAWRRVNHPTEVLTIGQTVK 251
Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
+++ + + R+ + +K E N G++ + YG F+ +E
Sbjct: 252 VKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNAR----FTGRVTNITDYGAFVELE- 306
Query: 1366 TNLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ GL HVSE+S + + I ++V+V++L+VD KRRISLG+K +
Sbjct: 307 PGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQT 358
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 1307 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
++L ++ + V+ +T T ++ + NL G ++ G +K + YG F+ +
Sbjct: 164 QILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDLGGI 223
Query: 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ GL HV++++ V++ + G+ VKVKI+K++ E RISLGMK
Sbjct: 224 D--GLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMK 269
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/356 (21%), Positives = 147/356 (41%), Gaps = 42/356 (11%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
+++ G V+ G V + +GA V GG+ L + ++ + P + +G + +++
Sbjct: 197 NLEEGQVIDGVVKNITDYGAFVDL-GGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKII 255
Query: 430 GV--KSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFYNGV 484
+ ++ RI++ K+ L I + Y A T R +T I +G FV G+
Sbjct: 256 KINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGR------VTNITDYGAFVELEPGI 309
Query: 485 QGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDD 540
+G SE+ P + Q V+ +++ RRI+L M P V +
Sbjct: 310 EGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEK 369
Query: 541 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI---------PTEHLADHLEHATVMKS 591
+GS V G +V +++ G G + P E + D+ + ++K+
Sbjct: 370 H-PVGSTVEG--EVKNKTEFGLFLGLDGDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKA 426
Query: 592 VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 651
V+ L +D E + L K L P D + +VV V ++ E+G
Sbjct: 427 VV---------LDVDVEKERISLGVK-QLEGDPFAEPGD---VKKGAVVTCEVLDVKESG 473
Query: 652 CFVRFLGR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
V+ +G F RS+ + S + VG+ V + ++ + + ++ +S+K
Sbjct: 474 IDVQIVGTDFNTFIKRSELARDRNDQRSDRFAVGEKVDARVIQFDKKARKVQVSIK 529
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 132/312 (42%), Gaps = 52/312 (16%)
Query: 1140 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1199
GR++ I G V++ P + G +H +E+ + + P Q V+
Sbjct: 291 GRVTNITDY--GAFVELEPGIEGLIHVSEMS----------WTKKNMHPGKIVSTSQEVE 338
Query: 1200 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1259
+VLE+ R + L L+ ++ P + +E V+G
Sbjct: 339 VQVLEVDSVKR---RISLGLKQTMR---------------NPWEVF--VEKHPVGSTVEG 378
Query: 1260 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE--KEFPIGKLVAGRVLSVEPLSKR 1317
VKN T G F+ L +D V LS+L D + + F G +V VL V+ +R
Sbjct: 379 EVKNKTEFGLFLGLDGDVDGMVHLSDL-DWKLPGEQVIDNFKKGDMVKAVVLDVDVEKER 437
Query: 1318 VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1377
+ + +K + ++ ++ G +V ++ V+ G+ + I T+ SEL
Sbjct: 438 ISLGVKQLEGDPFAEP-----GDVKKGAVVTCEVLDVKESGIDVQIVGTDFNTFIKRSEL 492
Query: 1378 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAI 1437
+ D D + GEKV ++++ DK+ R++ + +K+ L+++ E+ EAI
Sbjct: 493 ARDRNDQRSDRFAVGEKVDARVIQFDKKARKVQVSIKA---------LEVAEEK---EAI 540
Query: 1438 EEVGSYNRSSLL 1449
+ GS + + L
Sbjct: 541 AQYGSSDSGATL 552
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 103/485 (21%), Positives = 188/485 (38%), Gaps = 81/485 (16%)
Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK--KFKVG-- 421
F +++ V+KGKV+A++ A++ + PL E PG+ + KVG
Sbjct: 22 FAGGNLQESSVIKGKVVAIEKDMAVIDVGLKTEGRVPLR-----EFAGPGRDNEIKVGDT 76
Query: 422 AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 481
E+ + ++ K + L + +++ + + G F
Sbjct: 77 VEVFLDRIENALGEAVLSRDKARREESWGKLEKAFQNNEKVFG---VIFNQVKGGFTVDL 133
Query: 482 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVS 537
+G F PRS++ + P + + + + Q + R +I SRR L R
Sbjct: 134 DGAVAFLPRSQVDIRPIRDVAPLMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQE 193
Query: 538 EDDLVKLGSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPTEHLADHLEHATV 588
++ G ++ GVV +T V +V + + PTE L TV
Sbjct: 194 LVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLT---IGQTV 250
Query: 589 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNI 647
+IK +++E+ + L K L + Q + + +P N+ G V NI
Sbjct: 251 KVKIIK----------INHETHRISLGMKQLLDDPWQGIEAK----YPLNARFTGRVTNI 296
Query: 648 IETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706
+ G FV + G S+ + + K Q V +L+V+S RI+L LK
Sbjct: 297 TDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLK 356
Query: 707 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 766
Q+ + + F+++H +GS +EG+V +FG+
Sbjct: 357 QTMRNPWEV-FVEKH--------------------------PVGSTVEGEVKNKTEFGLF 389
Query: 767 VSFEEHSDVYGFI----THHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFI 818
+ + DV G + +L G V + G +++A +LDV + + L +K +
Sbjct: 390 LGLD--GDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERISLGVKQLEG 447
Query: 819 DRFRE 823
D F E
Sbjct: 448 DPFAE 452
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 95/446 (21%), Positives = 171/446 (38%), Gaps = 83/446 (18%)
Query: 601 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
Q+L +D N+++S + L + A+Q ++ V+ G V NI + G FV LG
Sbjct: 164 QILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVD-LGG 222
Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
+ G + + ++ +GQ+V+ I+ +N ET RI+L +KQ
Sbjct: 223 IDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQ------------ 270
Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 773
L G E K + + + G+V D+G V E H
Sbjct: 271 -----------LLDDPWQGIEAK----YPLNARFTGRVTNITDYGAFVELEPGIEGLIHV 315
Query: 774 DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT-------VFIDRFREANS 826
+ + G V + ++ +L+V +R + L LK VF+++
Sbjct: 316 SEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKHP---- 371
Query: 827 NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 886
V TV V+ E L L L G +SD + K P
Sbjct: 372 ------------------VGSTVEGEVKNKTEFGLFLGLD--GDVDGMVHLSDLD-WKLP 410
Query: 887 QKQ----FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLV 942
+Q F G V A V+ + R+ L +K + + KK G++V
Sbjct: 411 GEQVIDNFKKGDMVKAVVLDVDVEKE--RISLGVKQLEGDPFAEPGDVKK------GAVV 462
Query: 943 QAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 1001
E+ ++K + ++ G F+ I +E+ D+++ + F+ +G+ V AR+I
Sbjct: 463 TCEVLDVKESGIDVQIVGTDFNTFIKRSELARDRNDQRSDRFA---VGEKVDARVIQFDK 519
Query: 1002 KPDMKKSFLWELSIKPSMLTVSEIGS 1027
K + + L + +++ GS
Sbjct: 520 KARKVQVSIKALEVAEEKEAIAQYGS 545
>sp|P14128|RS1_PROSP 30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3
SV=1
Length = 378
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 15/162 (9%)
Query: 1259 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1315
G V N+T GCF+ + ++ V +S + + P K +G +V VL ++
Sbjct: 177 GRVTNLTDYGCFVEIEEGVEGLVHVSEMD--WTNKNIHPSKVVNVGDVVEVMVLDIDEER 234
Query: 1316 KRVEVTLKTSDSRTASQ-SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
+R+ + LK S Q +E +N GD V G+IK + +G+FI +E + GL H+
Sbjct: 235 RRISLGLKQCKSNPWQQFAETHNK-----GDRVEGKIKSITDFGIFIGLEG-GIDGLVHL 288
Query: 1375 SELSEDHVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMK 1414
S++S + V E + Y+ G+++ +L+VD E+ RISLG+K
Sbjct: 289 SDISWN-VAGEEAVREYKKGDEIAAVVLQVDAERERISLGVK 329
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 81 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 139
Query: 1308 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1367
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 140 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 194
Query: 1368 LVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 195 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 242
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1349
++E E EF + KL R V +S+R + ++S R L NL G V G
Sbjct: 41 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESESSAERDQL------LENLQEGMEVKG 92
Query: 1350 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 93 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 150
Query: 1410 SLGMK 1414
SLG+K
Sbjct: 151 SLGLK 155
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 7/163 (4%)
Query: 370 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 429
+++ GM VKG V + +GA V GGV L + M+ + P + VG E+ +VL
Sbjct: 83 NLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 141
Query: 430 GVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 487
+R +++ K+ +AI Y E T G +T + +GCFV GV+G
Sbjct: 142 KFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTK---LTGRVTNLTDYGCFVEIEEGVEGL 198
Query: 488 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
SE+ + PS + +VG VV+ ++ RRI+L
Sbjct: 199 VHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGL 241
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 121/317 (38%), Gaps = 45/317 (14%)
Query: 102 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 157
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 81 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 138
Query: 158 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 211
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 139 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 186
Query: 212 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 266
+ G V + + T + N V +L +D R + L L
Sbjct: 187 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 246
Query: 267 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 322
NP+ HN+ K+ I D + ++ G+ L+ + +VA
Sbjct: 247 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGGIDGLVHLSDIS---------WNVAG 297
Query: 323 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 382
EE + KK E + V +++ R L L F + + K G +V GKV
Sbjct: 298 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL---AATKKGAIVTGKVT 354
Query: 383 AVDSFGAIVQFPGGVKA 399
AVD+ GA V+ GV+
Sbjct: 355 AVDAKGATVELTLGVEG 371
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 17/143 (11%)
Query: 357 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 415
K++ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 245 KSNPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLEGGIDGLV---HLSDISWNVAGE 298
Query: 416 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 469
+++K G E+ VL V ++R + +L +LA ++Y AT + I G +T
Sbjct: 299 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNYLAATKKGAIVTGKVT 354
Query: 470 KIEKHGCFVRFYNGVQGFAPRSE 492
++ G V GV+G+ SE
Sbjct: 355 AVDAKGATVELTLGVEGYLRASE 377
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1315
V+G +K++T G FI L +D V LS++S E +E+ G +A VL V+
Sbjct: 262 VEGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 321
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1363
+R+ + +K + A N L+ G IV G++ V++ G + +
Sbjct: 322 ERISLGVK----QLAEDPFNNYLAATKKGAIVTGKVTAVDAKGATVEL 365
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 36/188 (19%)
Query: 642 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETG 699
G V N+ + GCFV + G S+ +D ++ SK VG V +LD++ E
Sbjct: 177 GRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR 235
Query: 700 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 759
RI+L LKQ C S+ F + H G +EGK+
Sbjct: 236 RISLGLKQ-CKSNPWQQFAETHNK--------------------------GDRVEGKIKS 268
Query: 760 SNDFGVVVSFEEHSD--VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSL 813
DFG+ + E D V+ +AG + G I A +L V + L +
Sbjct: 269 ITDFGIFIGLEGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGV 328
Query: 814 KTVFIDRF 821
K + D F
Sbjct: 329 KQLAEDPF 336
>sp|Q89AJ3|RS1_BUCBP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rpsA PE=3 SV=2
Length = 566
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 11/170 (6%)
Query: 1248 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1307
+E L +IV G VKN+T G F+ L +D + +++++ V+ P + IG V +
Sbjct: 186 LETLQEGLIVSGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNIGDEVKIK 244
Query: 1308 VLSVEPLSKRVEVTLKT-SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1366
+L + RV + LK SD SE + G++ + YG F+ IE
Sbjct: 245 ILKFDREKIRVSLGLKQLSDDPWTKISE-----RYPEKTKITGRVTNLTDYGCFVEIEE- 298
Query: 1367 NLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ GL HVSE+ + NI + + VKV IL +D+E+RRISLG+K
Sbjct: 299 GVEGLVHVSEMDWTN-KNIHPSKMVQVNSVVKVMILDIDEERRRISLGLK 347
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 371 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 430
++ G++V G V + +GA V GGV L + M+ + P + +G E+ ++L
Sbjct: 189 LQEGLIVSGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILK 247
Query: 431 VKSKRITVTHK-KTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 488
++I V+ K L +S Y E T IT G +T + +GCFV GV+G
Sbjct: 248 FDREKIRVSLGLKQLSDDPWTKISERYPEKTK--IT-GRVTNLTDYGCFVEIEEGVEGLV 304
Query: 489 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 529
SE+ + PS M V VVK I+ RRI+L
Sbjct: 305 HVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGL 346
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 88/162 (54%), Gaps = 11/162 (6%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPL 1314
+ G V N+T GCF+ + ++ V +S + ++ + P K + +V +L ++
Sbjct: 280 ITGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKMVQVNSVVKVMILDIDEE 338
Query: 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1374
+R+ + LK + + + G V+G+IK + +G+FI +E + + GL H+
Sbjct: 339 RRRISLGLKQCKNNPWMEFS----KKYNKGSHVVGKIKSITDFGIFIGLEGS-IDGLVHL 393
Query: 1375 SELSEDHVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMK 1414
S++S + + E++ Y+ GE+V +L+VD ++ RISLG+K
Sbjct: 394 SDISWN-ISGEESVKKYKKGEEVLAVVLQVDPDRERISLGIK 434
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 1328 RTASQSEINN-----LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1382
R +SE N L L G IV G +K + YG F+ + + GL H+++++ V
Sbjct: 171 RAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRV 228
Query: 1383 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ I G++VK+KILK D+EK R+SLG+K
Sbjct: 229 KHPSEIVNIGDEVKIKILKFDREKIRVSLGLK 260
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 113/531 (21%), Positives = 213/531 (40%), Gaps = 87/531 (16%)
Query: 372 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431
+PG +++G V+A+ +V +K+ +P + +F+ + + KVG ++ + +
Sbjct: 19 RPGSIIQGTVVAITKDTILVD--AKLKSESKIP-IDQFKNSQGELEVKVGDQIDVALDAI 75
Query: 432 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491
+ + K A L+ D G I K G V + ++ F P S
Sbjct: 76 EDGFGETLLSREKAKRHEAWLTLEQAYKDSKTVVGLINGKVKGGFTVELED-IRAFLPGS 134
Query: 492 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 545
+ + P E +M+ G+ ++ +++ +++ SRR + R + ++ G
Sbjct: 135 LVDIRPVRE--TMHLEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEG 192
Query: 546 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 603
+VSG+V +T V + G G + +A ++H + ++ G E ++L
Sbjct: 193 LIVSGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNIGDEVKIKIL 246
Query: 604 VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCNIIETGCFVRFLG 658
D E + L K QL D S +P + G V N+ + GCFV
Sbjct: 247 KFDREKIRVSLGLK--------QLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIEE 298
Query: 659 RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 716
+ G S+ +D ++ SK V V+ ILD++ E RI+L LKQ C ++
Sbjct: 299 GVEGLVHVSE-MDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQ-CKNNPWME 356
Query: 717 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------ 770
F S K+N GS + GK+ DFG+ + E
Sbjct: 357 F---------------SKKYNK-----------GSHVVGKIKSITDFGIFIGLEGSIDGL 390
Query: 771 -EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 829
SD+ I+ + + + G + A +L V + L +K + D F + S+ +
Sbjct: 391 VHLSDISWNISGEE-SVKKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPFAKYVSSHK 449
Query: 830 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY-NHSIGYASVSD 879
V+ ++ + N +V+SL E+ + I + ++SD
Sbjct: 450 K---------------GSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLNISD 485
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 8/161 (4%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1315
V G +K++T G FI L +D V LS++S E K++ G+ V VL V+P
Sbjct: 367 VVGKIKSITDFGIFIGLEGSIDGLVHLSDISWNISGEESVKKYKKGEEVLAVVLQVDPDR 426
Query: 1316 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN--TNLVGLCH 1373
+R+ + +K ++ +S+ G +V G IK++++ + +++ L+ +
Sbjct: 427 ERISLGIKQLQEDPFAKY----VSSHKKGSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLN 482
Query: 1374 VS-ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413
+S E+ H + + GE V+VK+ +DK++R I L +
Sbjct: 483 ISDEIMNVHDNKPWNKAKIGEIVEVKLNSIDKKERIIYLSI 523
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 159/392 (40%), Gaps = 80/392 (20%)
Query: 98 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSGI 147
+ L LET+QEG++++ VK++ D+G + G G L ++A N G
Sbjct: 182 RNLLLETLQEGLIVSGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNIGD 239
Query: 148 DVKPGLLLQGVVRSIDRTRKVV-----YLSSDPDT-VSKCVTKDLKGISIDLLVPGMMVS 201
+VK +L DR + V LS DP T +S+ + K ++
Sbjct: 240 EVKIKIL------KFDREKIRVSLGLKQLSDDPWTKISERYPEKTK------------IT 281
Query: 202 TRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA 261
RV ++ + G + G V + + T + + V IL +D R
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRR 341
Query: 262 VGLTL-----NPYLLHNRA--PPSHV--KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 312
+ L L NP++ ++ SHV K+ I D G+ + + S
Sbjct: 342 ISLGLKQCKNNPWMEFSKKYNKGSHVVGKIKSITD----------FGIFIGLEG---SID 388
Query: 313 AYVTISDVA-----EEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGL 364
V +SD++ EE V KKYK+G V +L E ++ GI L+ F
Sbjct: 389 GLVHLSDISWNISGEESV----KKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPFAKY 444
Query: 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV-----KPGKKFK 419
V +H K G +V G + +D+ +V + L ++S+ EI+ KP K K
Sbjct: 445 VSSH---KKGSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLNISD-EIMNVHDNKPWNKAK 500
Query: 420 VGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 451
+G E+V L K+ + + L K +L I
Sbjct: 501 IG-EIVEVKLNSIDKKERIIYLSILEKQELKI 531
>sp|Q527H0|CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1
Length = 691
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 129/300 (43%), Gaps = 56/300 (18%)
Query: 1531 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1590
++ A+ L +K+ R+ FER + N +WI+Y+ L ++ AR++ +RA+
Sbjct: 76 LQYAQWELEQKEYARSRSVFERALNLHANKVTLWIRYVEAELKSRNINFARNLLDRAVTH 135
Query: 1591 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1650
+ + +W Y +E GN P V +VF+R +++ + A + L +R +
Sbjct: 136 LPRVD-----KLWYKYVWVEEMLGNIP--GVRQVFERWMEWQPDEAAWSAFIKLEQRYGE 188
Query: 1651 NKLADELLYKMI------------KKFKHSC-------KVWLRRVQRLLKQQQEGVQ--- 1688
A E+ + KF+ +V+ R ++ L K E V+
Sbjct: 189 YDRAREIFTRFTMVHPEPRNWIKWSKFEEEYGTSDRVREVFERAIEELSKYGDEFVEERL 248
Query: 1689 ------------------AVVQRALLSLPRHK----HIKFISQTAILEFKNGVAD----R 1722
A+ + L +LPR K H ++ + + GV D +
Sbjct: 249 FIAYARYEAKLHDLDRARAIYKFGLENLPRSKAMLLHKEYTTFEKQYGDREGVEDVVLSK 308
Query: 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782
R +E ++ E PK D+W Y E GD+D R ++E+AI+ +PP + K +++Y+
Sbjct: 309 RRRHYEDLVRENPKNYDVWFDYARLEEASGDIDRTREVYEKAIA-QVPPTQAKRHWRRYI 367
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 1709 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1768
Q A E + R RS+FE L+ + + LW Y++ E++ +++ R L +RA++
Sbjct: 77 QYAQWELEQKEYARSRSVFERALNLHANKVTLWIRYVEAELKSRNINFARNLLDRAVT-H 135
Query: 1769 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804
LP ++ L+ KY+ E+ +G + V ++ ME+
Sbjct: 136 LP--RVDKLWYKYVWVEEMLGNIPGVRQVFERWMEW 169
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 98/241 (40%), Gaps = 28/241 (11%)
Query: 1550 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ----TINIREENEKLNIWVA 1605
+E LVR +P + VW Y + D+++ R + E+A+ T R + +W+
Sbjct: 313 YEDLVRENPKNYDVWFDYARLEEASGDIDRTREVYEKAIAQVPPTQAKRHWRRYIYLWI- 371
Query: 1606 YFNL--ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE---RTEQNKLADELLYK 1660
+F L E E NP E +V+ L+ + A + +++ Q LA K
Sbjct: 372 FFALWEETEAKNP--ERARQVYDTCLKLIPHRTFTFAKVWMHKAHFEIRQGDLA--AARK 427
Query: 1661 MIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKF-----ISQTAILEF 1715
+ + C RL K E Q + + + KHI + + E
Sbjct: 428 TLGRAIGMCPK-----DRLFKGYIEMEQKLYEFGRCRILYEKHIAYNPANCSTWVKWAEL 482
Query: 1716 KNGVAD--RGRSMFE-GILSEYPKRTDL-WSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1771
+ G+ D R R++ + GI ++ W Y+D E G+ D R L+ER + + P
Sbjct: 483 ERGLDDLDRARAILDMGIAQPVLDMPEVVWKSYIDFEEEEGEYDKTRSLYERLLDKADHP 542
Query: 1772 K 1772
K
Sbjct: 543 K 543
>sp|Q1RJH1|RS1_RICBR 30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C)
GN=rpsA PE=3 SV=1
Length = 572
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 12/174 (6%)
Query: 1246 EKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIG 1301
EKI++ P + G V N G FI L L+ V S +S +++S P K IG
Sbjct: 284 EKIKEEFPVGKKMTGKVTNFADYGVFIELKDGLEGLVHSSEIS--WLKSNQNPRKTLTIG 341
Query: 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1361
+ V VL V+ RV +++K + N VG ++ I+ + +G+F+
Sbjct: 342 QEVEFMVLEVDTEKHRVSLSIKQCQQNPLIKFAETN----PVGTVIKAPIRNITDFGIFV 397
Query: 1362 TIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ + NL G+ H +++ ED+ + + Y+ G++V+ K+L ++ EK +ISLG+K
Sbjct: 398 ALSD-NLDGMIHEGDITWEDNGNELLKTYKKGDEVECKVLTINIEKEQISLGIK 450
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 135/608 (22%), Positives = 247/608 (40%), Gaps = 112/608 (18%)
Query: 369 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 428
S +KPG VVKG+V+ ++ + G+K +P SEF ++ P K +LV
Sbjct: 34 SHIKPGTVVKGQVVDINEVVVVDV---GLKNEGRIPK-SEF-LLSPAHKLPEIGDLV--- 85
Query: 429 LGVKSKRITVTHKKTLVKSK---------LAILSSYAEATDRLITHGWITKIEKHGCFVR 479
V ++ KTL + K L ++ S E D I G + G F
Sbjct: 86 -DVYIEKTEGHSGKTLSREKAIKEELWGQLELICSKGEFVDGTI-FGRV-----KGGFTV 138
Query: 480 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTR 535
+GV F P S++ + P +PSS+ ++ Q K + + +I SRR L R
Sbjct: 139 DLSGVVAFLPGSQVDVRPIKDPSSIMNIRQPFKILSMDKKLGNIVVSRRAILEESRSEAR 198
Query: 536 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKS 591
+K G ++ G V +T + + G G + HL D + H + +
Sbjct: 199 DEMLSKIKEGMILEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWARVNHPSEV-- 250
Query: 592 VIKPGYEFDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 646
EF+Q ++ + E+ + L K N +++ + + G V N
Sbjct: 251 -----LEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKIKEE---FPVGKKMTGKVTN 302
Query: 647 IIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705
+ G F+ L G S+ + + KT +GQ V +L+V++E R++LS+
Sbjct: 303 FADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLSI 362
Query: 706 KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 765
KQ C Q++ L+ K+ E +G+VI+ + DFG+
Sbjct: 363 KQ--C--------QQNPLI-----------------KFAETNPVGTVIKAPIRNITDFGI 395
Query: 766 VVSFEEHSDVY---GFITHHQLAG---ATVESGSVIQAAILDVAKAERLVDLSLKTVFID 819
V+ ++ D G IT T + G ++ +L + + + L +K + +
Sbjct: 396 FVALSDNLDGMIHEGDITWEDNGNELLKTYKKGDEVECKVLTINIEKEQISLGIKQLTPN 455
Query: 820 RFRE-ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS 878
++ A+ ++ K A KD G+ VN + + G+ S
Sbjct: 456 PYQGIADEYKKGTVVKAVVTAIKDDGLEVLVN------------------DKAAGFIKKS 497
Query: 879 DYNTQKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKS 934
D + +K QK F Q + A V ++ S+ ++LL +KA I+E + + + +
Sbjct: 498 DLSDEKEEQKPEMFAVDQEIEAKVASIEKSTN--KILLSIKAYKIAERQKALKEYGSSDN 555
Query: 935 SYDVGSLV 942
+ ++G ++
Sbjct: 556 TTNMGDIL 563
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
+SR+ ++ E+ LS + G I+ G +K + YG FI + + + GL H++++S V++
Sbjct: 192 ESRSEARDEM--LSKIKEGMILEGTVKNITDYGAFIDLGSVD--GLLHLTDISWARVNHP 247
Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
+ +KVKV ++K ++E +RISLGMK
Sbjct: 248 SEVLEFNQKVKVMVIKFNEETKRISLGMK 276
>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti (strain 1021) GN=rpsA
PE=3 SV=2
Length = 568
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1385
+SR +SEI + NL G +V G +K + YG F+ + + GL HV++++ V++
Sbjct: 182 ESRAEQRSEI--VQNLEEGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHP 237
Query: 1386 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
I G++VKV+I+++++E RISLGMK
Sbjct: 238 SEILNIGQQVKVQIIRINQETHRISLGMK 266
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 9/173 (5%)
Query: 1246 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1305
E +++L +V+G VKN+T G F+ L +D + +++++ V P + IG+ V
Sbjct: 190 EIVQNLEEGQVVEGVVKNITDYGAFVDLG-GIDGLLHVTDMAWRRVNHPSEILNIGQQVK 248
Query: 1306 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1365
+++ + + R+ + +K +S + VG + G + + YG F+ +E
Sbjct: 249 VQIIRINQETHRISLGMKQLESDPWD----GIGAKYPVGKKISGTVTNITDYGAFVELE- 303
Query: 1366 TNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416
+ GL H+SE+S N+ I ++V V +L+VD KRRISLG+K +
Sbjct: 304 PGIEGLIHISEMSWTK-KNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQT 355
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 601 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 659
++L +D N+++S + L S A+Q ++ VV G V NI + G FV LG
Sbjct: 161 EILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVD-LGG 219
Query: 660 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 719
+ G + + S+ +GQ V+ I+ +N ET RI+L +KQ
Sbjct: 220 IDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQ------------ 267
Query: 720 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 770
L+S +G K + +G I G V D+G V E
Sbjct: 268 -----------LESDPWDGIGAK----YPVGKKISGTVTNITDYGAFVELE 303
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 13/163 (7%)
Query: 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEP 1313
+ G V N+T G F+ L ++ + +S +S + + P K + V VL V+P
Sbjct: 286 ISGTVTNITDYGAFVELEPGIEGLIHISEMS--WTKKNVHPGKILSTSQEVDVVVLEVDP 343
Query: 1314 LSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLC 1372
+R+ + LK + ++ ++ H G V G++K +GLFI ++ ++ G+
Sbjct: 344 TKRRISLGLKQT-----LENPWQAFAHSHPAGTEVEGEVKNKTEFGLFIGLDG-DVDGMV 397
Query: 1373 HVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414
H+S+L + + + + G+ V+ +L VD +K RISLG+K
Sbjct: 398 HLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDKERISLGIK 440
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 134/605 (22%), Positives = 229/605 (37%), Gaps = 86/605 (14%)
Query: 366 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425
F +D+ G V KG V A++ AIV V+ PL EF KVG E+
Sbjct: 19 FAKTDLAEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPL---KEFGAKAKDGTLKVGDEVE 75
Query: 426 FRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 483
V +++ ++ +K + L EA +R+ G I K G F +G
Sbjct: 76 VYVERIENALGEAVLSREKARREESWQRLEVKFEAGERV--EGIIFNQVK-GGFTVDLDG 132
Query: 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SSIPASRRINLSFMMKPTRVSED 539
F PRS++ + P + + + H Q + M +I SRR L R
Sbjct: 133 AVAFLPRSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIV 192
Query: 540 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 598
++ G +V GVV +T V + G G + +A + H + ++ G +
Sbjct: 193 QNLEEGQVVEGVVKNITDYGAFVDL---GGIDGLLHVTDMAWRRVNHPS---EILNIGQQ 246
Query: 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGC 652
Q++ ++ E+ + L K QL SD + + G V NI + G
Sbjct: 247 VKVQIIRINQETHRISLGMK--------QLESDPWDGIGAKYPVGKKISGTVTNITDYGA 298
Query: 653 FVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 711
FV + G S+ + + K Q V +L+V+ RI+L LKQ+ +
Sbjct: 299 FVELEPGIEGLIHISEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLEN 358
Query: 712 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 771
A F H G+ +EG+V +FG+ + +
Sbjct: 359 PWQA-FAHSH--------------------------PAGTEVEGEVKNKTEFGLFIGLD- 390
Query: 772 HSDVYGFITHHQL----AGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 823
DV G + L G V G V++A +LDV + + L +K + D E
Sbjct: 391 -GDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDKERISLGIKQLGRDAVGE 449
Query: 824 ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 883
A AS +L + V+A V V + + + L + + +D +
Sbjct: 450 A-------------AASGELRKNAVVSAEVIGVNDGGIEVRLVNHEDVTAFIRRADLSRD 496
Query: 884 KFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSL 941
+ Q+ +F GQ+V A V +L + I+E + + ++ S +G +
Sbjct: 497 RDEQRPERFSVGQTVDARVTNFSKKDRKIQLSIKALEIAEEKEAVAQFGSSDSGASLGDI 556
Query: 942 VQAEI 946
+ A +
Sbjct: 557 LGAAL 561
>sp|Q51152|YHGF_NEIMB Uncharacterized protein NMB0075 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=NMB0075 PE=4 SV=2
Length = 757
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1328 RTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1386
+TAS +E I+ +S+L VG I+ G + V ++G F+ I + GL H+S LS V +
Sbjct: 623 QTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDI-GVHQDGLVHISALSNKFVQDPR 681
Query: 1387 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1435
+ +AG+ VKVK+L+VD ++RI+L M+ A + +M SE S E
Sbjct: 682 EVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGGAKH-KMPSENRSRE 729
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 645,325,175
Number of Sequences: 539616
Number of extensions: 27400519
Number of successful extensions: 102579
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 605
Number of HSP's that attempted gapping in prelim test: 96116
Number of HSP's gapped (non-prelim): 5475
length of query: 1810
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1678
effective length of database: 120,340,147
effective search space: 201930766666
effective search space used: 201930766666
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)