Query 000236
Match_columns 1810
No_of_seqs 663 out of 4563
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 00:43:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1070 rRNA processing protei 100.0 1E-176 2E-181 1628.9 98.6 1540 1-1809 109-1705(1710)
2 KOG1070 rRNA processing protei 100.0 3E-102 7E-107 965.2 80.4 1459 2-1766 150-1699(1710)
3 COG0539 RpsA Ribosomal protein 100.0 5.1E-64 1.1E-68 604.0 42.0 491 189-710 14-516 (541)
4 COG0539 RpsA Ribosomal protein 100.0 2.2E-60 4.8E-65 572.6 44.6 496 277-820 16-518 (541)
5 PRK12269 bifunctional cytidyla 100.0 2.8E-57 6.2E-62 586.5 46.6 494 188-710 313-829 (863)
6 PRK06299 rpsA 30S ribosomal pr 100.0 8.2E-56 1.8E-60 573.2 46.9 496 192-710 26-534 (565)
7 PRK12269 bifunctional cytidyla 100.0 1.1E-55 2.3E-60 571.9 47.7 507 839-1417 315-828 (863)
8 TIGR00717 rpsA ribosomal prote 100.0 6.8E-56 1.5E-60 569.8 45.4 491 191-706 13-516 (516)
9 PRK06299 rpsA 30S ribosomal pr 100.0 8E-55 1.7E-59 564.0 48.4 508 841-1418 26-534 (565)
10 TIGR00717 rpsA ribosomal prote 100.0 1.4E-53 3.1E-58 548.3 46.6 502 841-1414 14-516 (516)
11 PRK13806 rpsA 30S ribosomal pr 100.0 1E-49 2.2E-54 500.0 43.6 418 935-1416 31-451 (491)
12 PRK13806 rpsA 30S ribosomal pr 100.0 1.1E-48 2.5E-53 490.7 40.7 412 279-709 31-452 (491)
13 PRK07899 rpsA 30S ribosomal pr 100.0 7.6E-43 1.6E-47 428.3 35.4 333 1036-1416 33-365 (486)
14 PRK07899 rpsA 30S ribosomal pr 100.0 1.3E-42 2.8E-47 426.2 33.4 328 368-710 30-367 (486)
15 PRK06676 rpsA 30S ribosomal pr 100.0 4.4E-40 9.6E-45 407.5 34.7 334 363-710 7-351 (390)
16 PRK06676 rpsA 30S ribosomal pr 100.0 4.5E-39 9.7E-44 398.5 36.0 336 1036-1418 15-351 (390)
17 PRK00087 4-hydroxy-3-methylbut 100.0 5.7E-37 1.2E-41 398.2 35.8 335 1036-1417 300-635 (647)
18 PRK00087 4-hydroxy-3-methylbut 100.0 8.4E-37 1.8E-41 396.6 34.0 332 365-710 294-636 (647)
19 PRK07400 30S ribosomal protein 100.0 8.8E-32 1.9E-36 317.5 27.1 240 1132-1418 29-269 (318)
20 PRK07400 30S ribosomal protein 100.0 4.7E-31 1E-35 311.4 29.4 238 458-711 29-270 (318)
21 KOG1915 Cell cycle control pro 99.9 9.1E-23 2E-27 232.9 29.3 259 1541-1806 188-538 (677)
22 KOG1915 Cell cycle control pro 99.9 3.3E-22 7.2E-27 228.4 28.5 256 1541-1805 87-396 (677)
23 KOG0495 HAT repeat protein [RN 99.9 4.6E-20 1E-24 218.1 28.5 262 1530-1804 518-782 (913)
24 KOG0495 HAT repeat protein [RN 99.8 1.4E-18 3E-23 205.7 27.2 253 1538-1803 595-879 (913)
25 KOG2047 mRNA splicing factor [ 99.8 4.2E-17 9.2E-22 193.4 24.9 265 1540-1809 400-727 (835)
26 KOG2047 mRNA splicing factor [ 99.7 8.8E-16 1.9E-20 182.4 27.9 262 1538-1804 358-651 (835)
27 KOG4626 O-linked N-acetylgluco 99.7 6.2E-16 1.4E-20 182.1 20.8 179 1619-1802 303-483 (966)
28 KOG4626 O-linked N-acetylgluco 99.7 1E-15 2.2E-20 180.5 21.8 252 1541-1804 198-451 (966)
29 TIGR00990 3a0801s09 mitochondr 99.7 1.3E-14 2.8E-19 192.3 31.5 253 1542-1806 309-573 (615)
30 PRK15174 Vi polysaccharide exp 99.7 2.6E-14 5.7E-19 188.8 33.1 251 1541-1804 124-381 (656)
31 TIGR00990 3a0801s09 mitochondr 99.7 3E-14 6.6E-19 188.9 33.6 194 1604-1803 335-536 (615)
32 COG2996 Predicted RNA-bindinin 99.7 1.1E-14 2.3E-19 158.5 23.7 231 458-725 3-237 (287)
33 PRK15174 Vi polysaccharide exp 99.7 5.6E-14 1.2E-18 185.7 34.7 251 1540-1803 89-346 (656)
34 PRK11788 tetratricopeptide rep 99.6 7.6E-14 1.7E-18 175.3 33.0 257 1539-1804 47-311 (389)
35 PF13429 TPR_15: Tetratricopep 99.6 2.2E-15 4.8E-20 179.8 13.4 256 1538-1806 19-279 (280)
36 PTZ00248 eukaryotic translatio 99.6 2.9E-16 6.3E-21 180.6 1.6 148 1249-1401 12-172 (319)
37 TIGR02917 PEP_TPR_lipo putativ 99.6 3.4E-13 7.3E-18 188.2 32.2 249 1541-1802 649-898 (899)
38 PRK11447 cellulose synthase su 99.6 5.8E-13 1.3E-17 188.0 33.8 258 1540-1804 364-700 (1157)
39 PF05843 Suf: Suppressor of fo 99.6 1.9E-14 4.1E-19 170.0 15.8 135 1670-1807 2-139 (280)
40 TIGR02917 PEP_TPR_lipo putativ 99.6 5.5E-13 1.2E-17 186.1 32.9 251 1541-1803 479-731 (899)
41 PRK11447 cellulose synthase su 99.6 7.3E-13 1.6E-17 187.0 34.2 204 1540-1747 282-538 (1157)
42 PRK09782 bacteriophage N4 rece 99.6 7.3E-13 1.6E-17 178.4 31.3 249 1541-1804 490-740 (987)
43 COG1098 VacB Predicted RNA bin 99.5 4.9E-15 1.1E-19 141.5 6.1 75 1340-1416 2-76 (129)
44 KOG1914 mRNA cleavage and poly 99.5 3.1E-12 6.6E-17 150.7 29.8 271 1530-1802 22-499 (656)
45 COG2996 Predicted RNA-bindinin 99.5 8.2E-13 1.8E-17 144.0 23.2 213 1132-1418 3-220 (287)
46 PRK09782 bacteriophage N4 rece 99.5 2.9E-12 6.3E-17 172.7 32.4 245 1546-1805 460-707 (987)
47 PRK11788 tetratricopeptide rep 99.5 6.2E-12 1.3E-16 158.0 30.4 252 1540-1804 82-347 (389)
48 COG1098 VacB Predicted RNA bin 99.5 1.8E-14 3.8E-19 137.7 5.1 77 633-710 2-78 (129)
49 KOG1126 DNA-binding cell divis 99.5 9E-13 2E-17 160.1 21.0 254 1543-1803 335-619 (638)
50 KOG0547 Translocase of outer m 99.5 6.2E-12 1.3E-16 146.5 25.0 239 1538-1786 337-582 (606)
51 PF13429 TPR_15: Tetratricopep 99.5 3.6E-13 7.8E-18 160.8 14.9 215 1541-1766 58-276 (280)
52 PRK12370 invasion protein regu 99.5 9.6E-12 2.1E-16 162.1 28.1 244 1543-1802 277-533 (553)
53 KOG1155 Anaphase-promoting com 99.4 1.3E-11 2.9E-16 143.1 24.8 248 1544-1803 244-494 (559)
54 TIGR00540 hemY_coli hemY prote 99.4 1.2E-10 2.7E-15 146.3 35.1 265 1531-1807 88-402 (409)
55 COG3063 PilF Tfp pilus assembl 99.4 2.1E-11 4.5E-16 131.0 23.3 192 1600-1797 35-229 (250)
56 KOG0547 Translocase of outer m 99.4 1.7E-11 3.7E-16 142.9 24.2 235 1561-1807 326-569 (606)
57 COG3063 PilF Tfp pilus assembl 99.4 3.5E-11 7.6E-16 129.3 23.8 196 1561-1766 35-235 (250)
58 PTZ00248 eukaryotic translatio 99.4 4.7E-13 1E-17 154.4 9.6 109 633-768 13-125 (319)
59 KOG2076 RNA polymerase III tra 99.4 1.2E-10 2.5E-15 145.8 31.1 253 1538-1800 150-508 (895)
60 TIGR02521 type_IV_pilW type IV 99.4 5.5E-11 1.2E-15 136.8 27.0 199 1600-1803 31-231 (234)
61 cd05705 S1_Rrp5_repeat_hs14 S1 99.4 7.8E-13 1.7E-17 121.9 9.0 71 1251-1321 1-74 (74)
62 KOG1155 Anaphase-promoting com 99.4 5.9E-11 1.3E-15 137.9 26.1 252 1541-1803 276-535 (559)
63 TIGR02521 type_IV_pilW type IV 99.4 6.7E-11 1.5E-15 136.2 27.2 199 1559-1766 29-231 (234)
64 PRK12370 invasion protein regu 99.4 6.4E-11 1.4E-15 154.4 29.4 236 1556-1803 251-501 (553)
65 PRK10049 pgaA outer membrane p 99.4 1.4E-10 3.1E-15 156.8 32.4 260 1540-1804 129-456 (765)
66 PRK10747 putative protoheme IX 99.4 3.4E-10 7.4E-15 141.5 33.3 251 1540-1806 97-392 (398)
67 PRK10049 pgaA outer membrane p 99.4 8.5E-11 1.9E-15 159.0 29.8 254 1540-1804 96-422 (765)
68 cd05705 S1_Rrp5_repeat_hs14 S1 99.4 1.5E-12 3.3E-17 119.9 8.5 71 634-704 1-74 (74)
69 PLN03218 maturation of RBCL 1; 99.4 2.9E-10 6.3E-15 154.6 33.4 250 1543-1801 488-745 (1060)
70 cd05693 S1_Rrp5_repeat_hs1_sc1 99.3 1.7E-12 3.6E-17 126.7 8.1 90 6-97 1-100 (100)
71 cd05694 S1_Rrp5_repeat_hs2_sc2 99.3 3.8E-12 8.3E-17 117.1 9.8 71 633-709 1-72 (74)
72 cd05694 S1_Rrp5_repeat_hs2_sc2 99.3 2.9E-12 6.2E-17 117.9 8.2 71 104-176 1-71 (74)
73 KOG1258 mRNA processing protei 99.3 3.2E-10 7E-15 137.7 27.6 250 1545-1803 63-394 (577)
74 KOG1126 DNA-binding cell divis 99.3 2.5E-11 5.5E-16 147.8 18.0 213 1551-1774 411-625 (638)
75 PF05843 Suf: Suppressor of fo 99.3 1.5E-11 3.4E-16 145.3 16.0 140 1601-1742 2-145 (280)
76 cd05703 S1_Rrp5_repeat_hs12_sc 99.3 4.6E-12 9.9E-17 116.6 9.0 70 1344-1414 1-72 (73)
77 cd04461 S1_Rrp5_repeat_hs8_sc7 99.3 4.5E-12 9.7E-17 120.6 8.4 79 627-705 5-83 (83)
78 cd05703 S1_Rrp5_repeat_hs12_sc 99.3 7.7E-12 1.7E-16 115.2 9.2 70 1254-1323 1-72 (73)
79 PLN03218 maturation of RBCL 1; 99.3 1.1E-09 2.4E-14 149.0 33.9 253 1541-1803 451-712 (1060)
80 KOG1914 mRNA cleavage and poly 99.3 4.9E-10 1.1E-14 132.4 25.6 243 1551-1803 10-359 (656)
81 PRK11189 lipoprotein NlpI; Pro 99.3 8.5E-10 1.8E-14 132.2 27.3 207 1546-1766 45-264 (296)
82 cd05698 S1_Rrp5_repeat_hs6_sc5 99.3 1.3E-11 2.8E-16 113.6 8.5 70 637-706 1-70 (70)
83 PF00575 S1: S1 RNA binding do 99.3 2.8E-11 6.2E-16 112.6 10.5 73 634-706 2-74 (74)
84 COG2956 Predicted N-acetylgluc 99.2 5.4E-09 1.2E-13 117.1 28.6 224 1538-1766 46-277 (389)
85 cd05704 S1_Rrp5_repeat_hs13 S1 99.2 2.5E-11 5.4E-16 111.7 8.3 71 1341-1414 1-72 (72)
86 KOG2396 HAT (Half-A-TPR) repea 99.2 1.9E-09 4.1E-14 127.1 25.4 258 1543-1808 121-563 (568)
87 cd05704 S1_Rrp5_repeat_hs13 S1 99.2 3.3E-11 7.1E-16 110.8 8.7 71 1251-1323 1-72 (72)
88 cd05696 S1_Rrp5_repeat_hs4 S1_ 99.2 3.8E-11 8.2E-16 110.1 8.7 69 637-705 1-71 (71)
89 TIGR00540 hemY_coli hemY prote 99.2 1.7E-09 3.7E-14 136.0 26.8 227 1533-1766 159-398 (409)
90 PF00575 S1: S1 RNA binding do 99.2 6.4E-11 1.4E-15 110.3 10.3 73 1251-1323 2-74 (74)
91 cd05706 S1_Rrp5_repeat_sc10 S1 99.2 7.7E-11 1.7E-15 109.3 9.9 73 1341-1414 1-73 (73)
92 cd05706 S1_Rrp5_repeat_sc10 S1 99.2 1E-10 2.2E-15 108.5 10.7 73 1251-1323 1-73 (73)
93 cd05686 S1_pNO40 S1_pNO40: pNO 99.2 6.9E-11 1.5E-15 109.3 9.4 71 1342-1413 2-72 (73)
94 cd05697 S1_Rrp5_repeat_hs5 S1_ 99.2 5.6E-11 1.2E-15 108.8 8.6 69 637-705 1-69 (69)
95 cd05696 S1_Rrp5_repeat_hs4 S1_ 99.2 6.1E-11 1.3E-15 108.7 8.7 69 1344-1413 1-71 (71)
96 KOG2002 TPR-containing nuclear 99.2 3.3E-09 7.1E-14 133.7 26.6 255 1543-1808 146-446 (1018)
97 cd05707 S1_Rrp5_repeat_sc11 S1 99.2 5E-11 1.1E-15 108.8 7.9 68 637-704 1-68 (68)
98 cd04461 S1_Rrp5_repeat_hs8_sc7 99.2 6.9E-11 1.5E-15 112.5 9.0 78 1245-1322 6-83 (83)
99 PRK11189 lipoprotein NlpI; Pro 99.2 4.1E-09 8.8E-14 126.4 26.4 219 1575-1804 40-265 (296)
100 cd05698 S1_Rrp5_repeat_hs6_sc5 99.2 7.6E-11 1.6E-15 108.4 8.7 70 1344-1414 1-70 (70)
101 KOG1173 Anaphase-promoting com 99.2 3.6E-09 7.7E-14 126.5 24.8 230 1552-1790 303-542 (611)
102 cd05697 S1_Rrp5_repeat_hs5 S1_ 99.2 9.5E-11 2.1E-15 107.3 8.9 69 1344-1413 1-69 (69)
103 KOG1173 Anaphase-promoting com 99.2 2.1E-09 4.5E-14 128.5 22.2 252 1540-1803 257-517 (611)
104 cd05708 S1_Rrp5_repeat_sc12 S1 99.2 1.3E-10 2.9E-15 109.2 9.8 77 1342-1418 1-77 (77)
105 PRK08582 hypothetical protein; 99.2 1.5E-10 3.3E-15 119.9 11.0 80 1251-1331 3-82 (139)
106 PLN03081 pentatricopeptide (PP 99.1 4.4E-09 9.5E-14 142.0 27.5 247 1543-1802 306-555 (697)
107 COG5107 RNA14 Pre-mRNA 3'-end 99.1 3.3E-09 7E-14 122.5 21.5 232 1562-1805 262-532 (660)
108 PRK07252 hypothetical protein; 99.1 2.1E-10 4.5E-15 115.6 10.2 76 635-710 2-77 (120)
109 PRK08582 hypothetical protein; 99.1 2.3E-10 5E-15 118.6 10.5 76 634-710 3-78 (139)
110 cd05707 S1_Rrp5_repeat_sc11 S1 99.1 1.7E-10 3.7E-15 105.3 8.2 68 1344-1412 1-68 (68)
111 cd05693 S1_Rrp5_repeat_hs1_sc1 99.1 1.1E-10 2.4E-15 114.1 7.0 77 1251-1327 1-99 (100)
112 KOG1258 mRNA processing protei 99.1 2.1E-08 4.5E-13 122.2 27.6 246 1541-1795 93-420 (577)
113 cd04452 S1_IF2_alpha S1_IF2_al 99.1 3.5E-10 7.6E-15 105.9 9.7 73 635-707 2-76 (76)
114 PLN03081 pentatricopeptide (PP 99.1 1.1E-08 2.4E-13 138.0 27.4 223 1561-1800 259-487 (697)
115 cd05708 S1_Rrp5_repeat_sc12 S1 99.1 3.8E-10 8.3E-15 106.0 9.2 74 635-708 1-75 (77)
116 cd05690 S1_RPS1_repeat_ec5 S1_ 99.1 2.4E-10 5.3E-15 104.8 7.6 68 637-704 1-69 (69)
117 PRK07252 hypothetical protein; 99.1 4.6E-10 1E-14 113.1 10.1 76 1342-1418 2-77 (120)
118 cd05686 S1_pNO40 S1_pNO40: pNO 99.1 4.6E-10 9.9E-15 103.8 9.3 70 635-705 2-72 (73)
119 cd04452 S1_IF2_alpha S1_IF2_al 99.1 5.6E-10 1.2E-14 104.5 10.0 74 1342-1415 2-76 (76)
120 PRK10747 putative protoheme IX 99.1 1.6E-08 3.5E-13 126.6 26.0 227 1532-1766 158-389 (398)
121 cd05690 S1_RPS1_repeat_ec5 S1_ 99.1 4.3E-10 9.2E-15 103.2 8.4 68 1344-1412 1-69 (69)
122 cd05695 S1_Rrp5_repeat_hs3 S1_ 99.1 5.3E-10 1.1E-14 100.9 8.3 66 637-704 1-66 (66)
123 COG5107 RNA14 Pre-mRNA 3'-end 99.0 3.4E-08 7.3E-13 114.3 24.7 254 1543-1808 58-366 (660)
124 KOG1129 TPR repeat-containing 99.0 8.1E-09 1.7E-13 115.0 18.9 226 1565-1803 227-457 (478)
125 cd05691 S1_RPS1_repeat_ec6 S1_ 99.0 7.3E-10 1.6E-14 102.9 9.0 72 637-708 1-72 (73)
126 PRK05807 hypothetical protein; 99.0 7.8E-10 1.7E-14 114.4 9.9 74 1340-1416 2-75 (136)
127 cd05689 S1_RPS1_repeat_ec4 S1_ 99.0 7.1E-10 1.5E-14 102.5 8.6 71 634-704 1-72 (72)
128 PLN03077 Protein ECB2; Provisi 99.0 2.7E-08 5.9E-13 137.6 27.4 190 1602-1802 426-616 (857)
129 KOG1129 TPR repeat-containing 99.0 1.3E-08 2.9E-13 113.4 19.1 195 1605-1803 228-423 (478)
130 PLN02789 farnesyltranstransfer 99.0 7.8E-08 1.7E-12 115.1 27.2 230 1541-1780 51-312 (320)
131 cd05695 S1_Rrp5_repeat_hs3 S1_ 99.0 1.1E-09 2.5E-14 98.7 8.5 66 1344-1412 1-66 (66)
132 PLN03077 Protein ECB2; Provisi 99.0 5.4E-08 1.2E-12 134.7 29.4 246 1543-1802 471-718 (857)
133 cd05689 S1_RPS1_repeat_ec4 S1_ 99.0 1.3E-09 2.8E-14 100.8 9.1 71 1341-1412 1-72 (72)
134 KOG2002 TPR-containing nuclear 99.0 2.6E-08 5.7E-13 125.8 23.2 269 1530-1803 416-708 (1018)
135 cd05691 S1_RPS1_repeat_ec6 S1_ 99.0 1.9E-09 4.2E-14 100.1 9.9 72 1254-1325 1-72 (73)
136 cd05687 S1_RPS1_repeat_ec1_hs1 99.0 1.7E-09 3.7E-14 99.4 9.0 70 637-706 1-70 (70)
137 KOG2076 RNA polymerase III tra 99.0 1E-07 2.2E-12 120.1 27.1 232 1565-1805 143-479 (895)
138 KOG1125 TPR repeat-containing 99.0 7.9E-09 1.7E-13 124.5 16.6 243 1540-1792 298-559 (579)
139 PRK05807 hypothetical protein; 99.0 2.1E-09 4.6E-14 111.1 10.3 74 634-709 3-76 (136)
140 cd05687 S1_RPS1_repeat_ec1_hs1 99.0 2.5E-09 5.4E-14 98.3 9.4 70 1254-1323 1-70 (70)
141 KOG1125 TPR repeat-containing 99.0 2.2E-08 4.8E-13 120.7 19.9 230 1566-1807 290-530 (579)
142 PRK08059 general stress protei 99.0 3.9E-09 8.4E-14 107.9 11.2 81 1249-1329 3-83 (123)
143 PRK14574 hmsH outer membrane p 99.0 2.1E-07 4.6E-12 123.8 30.5 252 1540-1802 115-511 (822)
144 PRK08059 general stress protei 99.0 2.6E-09 5.6E-14 109.2 9.8 80 631-710 2-81 (123)
145 cd05692 S1_RPS1_repeat_hs4 S1_ 98.9 2.5E-09 5.4E-14 98.1 8.6 69 637-706 1-69 (69)
146 cd05684 S1_DHX8_helicase S1_DH 98.9 3.7E-09 8.1E-14 99.6 9.6 71 1344-1416 1-74 (79)
147 cd04465 S1_RPS1_repeat_ec2_hs2 98.9 3.1E-09 6.8E-14 96.6 8.8 67 637-706 1-67 (67)
148 KOG0624 dsRNA-activated protei 98.9 4.1E-07 9E-12 102.3 26.3 265 1540-1807 85-373 (504)
149 PHA02945 interferon resistance 98.9 4E-09 8.6E-14 95.8 8.6 73 1341-1416 9-84 (88)
150 cd05692 S1_RPS1_repeat_hs4 S1_ 98.9 3.9E-09 8.4E-14 96.8 8.9 69 1344-1414 1-69 (69)
151 PLN02789 farnesyltranstransfer 98.9 2.3E-07 4.9E-12 111.2 26.1 201 1558-1766 34-249 (320)
152 cd05684 S1_DHX8_helicase S1_DH 98.9 4.3E-09 9.4E-14 99.2 9.1 72 637-710 1-76 (79)
153 PRK15179 Vi polysaccharide bio 98.9 4.6E-08 1E-12 127.7 21.7 130 1635-1766 86-216 (694)
154 COG2956 Predicted N-acetylgluc 98.9 4E-07 8.6E-12 102.5 25.6 223 1572-1803 46-277 (389)
155 KOG0128 RNA-binding protein SA 98.9 1.4E-07 3E-12 117.6 24.2 269 1530-1800 152-559 (881)
156 KOG1840 Kinesin light chain [C 98.9 2.6E-07 5.6E-12 115.2 26.8 246 1558-1807 196-482 (508)
157 cd05685 S1_Tex S1_Tex: The C-t 98.9 3.3E-09 7.1E-14 97.0 7.6 68 637-704 1-68 (68)
158 cd05685 S1_Tex S1_Tex: The C-t 98.9 4.7E-09 1E-13 95.9 8.1 68 1344-1412 1-68 (68)
159 KOG2003 TPR repeat-containing 98.9 2.2E-07 4.7E-12 107.1 23.0 258 1530-1800 422-685 (840)
160 PRK15359 type III secretion sy 98.9 5E-08 1.1E-12 103.5 16.9 124 1622-1749 13-137 (144)
161 TIGR03302 OM_YfiO outer membra 98.9 2.1E-07 4.5E-12 108.2 23.3 188 1557-1766 29-231 (235)
162 KOG1128 Uncharacterized conser 98.9 6.2E-08 1.3E-12 119.3 18.7 220 1558-1803 392-615 (777)
163 PRK15179 Vi polysaccharide bio 98.9 1.4E-07 3.1E-12 123.3 23.2 158 1643-1805 57-218 (694)
164 cd04465 S1_RPS1_repeat_ec2_hs2 98.8 1E-08 2.2E-13 93.2 8.8 67 461-530 1-67 (67)
165 PHA02945 interferon resistance 98.8 1E-08 2.3E-13 93.1 8.6 72 635-709 10-85 (88)
166 KOG3060 Uncharacterized conser 98.8 5.3E-07 1.2E-11 98.6 23.3 193 1543-1744 28-231 (289)
167 cd04472 S1_PNPase S1_PNPase: P 98.8 9.7E-09 2.1E-13 93.9 8.4 68 637-705 1-68 (68)
168 TIGR03302 OM_YfiO outer membra 98.8 2.3E-07 4.9E-12 107.9 21.6 165 1636-1802 34-230 (235)
169 KOG4162 Predicted calmodulin-b 98.8 7E-07 1.5E-11 110.9 26.3 251 1545-1806 462-785 (799)
170 cd05699 S1_Rrp5_repeat_hs7 S1_ 98.8 1.2E-08 2.5E-13 90.6 7.3 72 545-617 1-72 (72)
171 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 98.8 1.4E-08 3E-13 97.5 8.4 75 1341-1417 4-82 (86)
172 cd05688 S1_RPS1_repeat_ec3 S1_ 98.8 1.8E-08 3.9E-13 92.1 8.8 68 1343-1412 1-68 (68)
173 cd05804 StaR_like StaR_like; a 98.8 4.3E-07 9.4E-12 112.6 23.9 259 1541-1807 20-296 (355)
174 TIGR02696 pppGpp_PNP guanosine 98.8 1.1E-08 2.3E-13 130.2 9.3 71 1340-1412 644-718 (719)
175 KOG1174 Anaphase-promoting com 98.8 5.3E-07 1.1E-11 103.9 21.8 228 1540-1774 245-505 (564)
176 PRK14574 hmsH outer membrane p 98.8 4.8E-07 1E-11 120.5 25.0 199 1555-1763 28-228 (822)
177 cd04472 S1_PNPase S1_PNPase: P 98.8 2.1E-08 4.5E-13 91.7 8.6 68 1344-1413 1-68 (68)
178 smart00316 S1 Ribosomal protei 98.8 2.1E-08 4.6E-13 92.6 8.8 72 635-706 1-72 (72)
179 KOG0128 RNA-binding protein SA 98.8 1.1E-06 2.4E-11 109.9 25.9 221 1552-1783 138-389 (881)
180 PRK10370 formate-dependent nit 98.8 2.4E-07 5.2E-12 103.8 18.4 117 1648-1766 52-172 (198)
181 KOG2003 TPR repeat-containing 98.8 8.8E-07 1.9E-11 102.2 22.7 221 1543-1774 472-694 (840)
182 cd05688 S1_RPS1_repeat_ec3 S1_ 98.8 2.1E-08 4.5E-13 91.7 8.0 68 636-704 1-68 (68)
183 COG1093 SUI2 Translation initi 98.8 8.5E-09 1.8E-13 112.7 6.3 75 1341-1415 9-84 (269)
184 cd04471 S1_RNase_R S1_RNase_R: 98.8 3.3E-08 7.2E-13 94.3 9.7 71 1343-1413 1-82 (83)
185 PRK10370 formate-dependent nit 98.8 2.2E-07 4.8E-12 104.1 17.8 121 1617-1739 54-179 (198)
186 KOG1128 Uncharacterized conser 98.8 8.6E-08 1.9E-12 118.1 15.1 200 1543-1767 414-616 (777)
187 KOG1174 Anaphase-promoting com 98.8 1.4E-06 3.1E-11 100.5 23.8 265 1531-1803 200-499 (564)
188 smart00316 S1 Ribosomal protei 98.7 4E-08 8.6E-13 90.7 9.4 72 1252-1323 1-72 (72)
189 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 98.7 2.8E-08 6.1E-13 95.4 8.6 75 634-709 4-82 (86)
190 COG2183 Tex Transcriptional ac 98.7 1.5E-08 3.3E-13 127.2 8.0 84 1244-1327 649-732 (780)
191 cd04453 S1_RNase_E S1_RNase_E: 98.7 3.6E-08 7.8E-13 94.1 8.7 75 1340-1415 4-83 (88)
192 KOG1840 Kinesin light chain [C 98.7 5E-07 1.1E-11 112.6 21.2 225 1540-1766 212-478 (508)
193 cd05804 StaR_like StaR_like; a 98.7 4E-06 8.8E-11 104.0 29.4 204 1557-1766 2-214 (355)
194 PLN00207 polyribonucleotide nu 98.7 2E-08 4.3E-13 130.5 8.9 77 1339-1417 749-826 (891)
195 PLN00207 polyribonucleotide nu 98.7 2.4E-08 5.1E-13 129.8 9.3 82 1250-1332 750-832 (891)
196 PRK03987 translation initiatio 98.7 3.7E-08 8.1E-13 113.1 9.5 76 1341-1416 6-82 (262)
197 KOG3060 Uncharacterized conser 98.7 2.6E-06 5.6E-11 93.4 22.6 160 1619-1782 69-233 (289)
198 COG2183 Tex Transcriptional ac 98.7 2.3E-08 5.1E-13 125.6 7.8 79 1337-1416 652-730 (780)
199 COG1093 SUI2 Translation initi 98.7 3.1E-08 6.7E-13 108.4 7.5 76 635-710 10-87 (269)
200 TIGR02696 pppGpp_PNP guanosine 98.7 4E-08 8.6E-13 125.1 9.4 71 633-704 644-718 (719)
201 cd04473 S1_RecJ_like S1_RecJ_l 98.7 1.2E-07 2.7E-12 88.6 10.1 67 630-705 10-76 (77)
202 cd04473 S1_RecJ_like S1_RecJ_l 98.7 1E-07 2.2E-12 89.2 9.5 67 1337-1413 10-76 (77)
203 cd04471 S1_RNase_R S1_RNase_R: 98.7 8.3E-08 1.8E-12 91.6 9.1 70 636-705 1-82 (83)
204 TIGR02552 LcrH_SycD type III s 98.7 6.4E-07 1.4E-11 94.2 16.6 117 1623-1741 4-122 (135)
205 cd04453 S1_RNase_E S1_RNase_E: 98.7 8.7E-08 1.9E-12 91.5 9.0 75 1250-1324 4-83 (88)
206 PRK15359 type III secretion sy 98.7 4.1E-07 8.8E-12 96.6 15.1 118 1654-1779 12-130 (144)
207 PRK09521 exosome complex RNA-b 98.6 1.8E-07 3.8E-12 103.7 12.4 104 1301-1418 30-145 (189)
208 PRK03987 translation initiatio 98.6 6.6E-08 1.4E-12 111.1 9.2 76 635-710 7-84 (262)
209 cd05702 S1_Rrp5_repeat_hs11_sc 98.6 8.6E-08 1.9E-12 87.9 7.8 62 637-698 1-64 (70)
210 cd05702 S1_Rrp5_repeat_hs11_sc 98.6 1E-07 2.2E-12 87.4 8.1 62 1254-1315 1-64 (70)
211 COG3071 HemY Uncharacterized e 98.6 4.4E-05 9.6E-10 89.3 31.2 253 1538-1805 95-391 (400)
212 cd04454 S1_Rrp4_like S1_Rrp4_l 98.6 1.3E-07 2.7E-12 89.9 8.7 75 1341-1417 4-78 (82)
213 KOG0624 dsRNA-activated protei 98.6 7.5E-06 1.6E-10 92.5 23.3 218 1540-1766 51-297 (504)
214 KOG4162 Predicted calmodulin-b 98.6 4.8E-06 1E-10 103.8 23.4 222 1544-1767 495-783 (799)
215 cd04454 S1_Rrp4_like S1_Rrp4_l 98.6 2.5E-07 5.4E-12 87.9 9.2 74 635-709 5-78 (82)
216 cd00164 S1_like S1_like: Ribos 98.6 1.2E-07 2.5E-12 85.6 6.7 65 640-704 1-65 (65)
217 COG1185 Pnp Polyribonucleotide 98.6 8.6E-08 1.9E-12 118.5 7.3 104 1309-1415 585-689 (692)
218 TIGR02552 LcrH_SycD type III s 98.5 1.3E-06 2.9E-11 91.8 15.2 115 1656-1774 4-119 (135)
219 PRK14720 transcript cleavage f 98.5 8E-06 1.7E-10 107.5 25.2 207 1556-1775 26-258 (906)
220 KOG1156 N-terminal acetyltrans 98.5 2.2E-05 4.8E-10 96.2 27.0 132 1542-1680 90-264 (700)
221 PRK11824 polynucleotide phosph 98.5 2E-07 4.4E-12 122.4 9.6 75 1339-1415 617-691 (693)
222 PRK11824 polynucleotide phosph 98.5 2.5E-07 5.3E-12 121.7 9.6 76 632-708 617-692 (693)
223 PF12569 NARP1: NMDA receptor- 98.5 5.4E-05 1.2E-09 96.0 30.0 88 1708-1798 198-285 (517)
224 cd00164 S1_like S1_like: Ribos 98.5 3.7E-07 8E-12 82.3 7.3 65 1257-1321 1-65 (65)
225 PRK14720 transcript cleavage f 98.5 7.3E-06 1.6E-10 107.8 21.7 199 1598-1806 29-254 (906)
226 COG4783 Putative Zn-dependent 98.5 8.4E-06 1.8E-10 97.5 19.9 130 1635-1766 306-436 (484)
227 COG3071 HemY Uncharacterized e 98.4 8.4E-05 1.8E-09 87.0 26.7 225 1529-1767 155-390 (400)
228 PRK09521 exosome complex RNA-b 98.4 1.7E-06 3.7E-11 95.9 12.4 95 602-709 40-144 (189)
229 cd05699 S1_Rrp5_repeat_hs7 S1_ 98.4 7.1E-07 1.5E-11 79.4 7.3 62 750-814 1-72 (72)
230 cd04460 S1_RpoE S1_RpoE: RpoE, 98.4 9.6E-07 2.1E-11 87.1 8.8 73 1345-1419 1-89 (99)
231 KOG1127 TPR repeat-containing 98.4 1.9E-05 4.2E-10 100.2 21.3 193 1601-1803 462-658 (1238)
232 COG5010 TadD Flp pilus assembl 98.4 2.6E-05 5.6E-10 86.9 20.0 159 1604-1766 70-230 (257)
233 KOG0550 Molecular chaperone (D 98.4 1.5E-05 3.3E-10 92.8 18.7 256 1542-1805 64-351 (486)
234 COG5010 TadD Flp pilus assembl 98.3 3.3E-05 7.1E-10 86.1 20.1 175 1546-1730 52-228 (257)
235 TIGR03591 polynuc_phos polyrib 98.3 1E-06 2.3E-11 115.5 8.6 71 632-703 614-684 (684)
236 PF12569 NARP1: NMDA receptor- 98.3 0.00017 3.6E-09 91.6 27.8 255 1541-1805 52-335 (517)
237 COG4783 Putative Zn-dependent 98.3 5.2E-05 1.1E-09 90.9 21.6 131 1666-1801 303-434 (484)
238 COG4700 Uncharacterized protei 98.3 5.2E-05 1.1E-09 79.2 18.7 147 1619-1766 73-225 (251)
239 TIGR03591 polynuc_phos polyrib 98.3 1E-06 2.2E-11 115.6 7.9 71 1339-1411 614-684 (684)
240 KOG2396 HAT (Half-A-TPR) repea 98.3 1.9E-05 4.1E-10 94.2 16.9 99 1652-1752 88-188 (568)
241 PF08424 NRDE-2: NRDE-2, neces 98.3 2.8E-05 6E-10 94.1 18.8 164 1547-1734 5-184 (321)
242 COG1185 Pnp Polyribonucleotide 98.2 1.3E-06 2.8E-11 108.4 7.0 105 602-708 584-690 (692)
243 PLN03088 SGT1, suppressor of 98.2 1.7E-05 3.6E-10 97.6 16.3 108 1639-1748 6-114 (356)
244 PRK04163 exosome complex RNA-b 98.2 7.3E-06 1.6E-10 93.7 12.0 78 1340-1419 60-141 (235)
245 KOG1156 N-terminal acetyltrans 98.2 0.00028 6.2E-09 86.8 25.6 221 1543-1773 57-287 (700)
246 COG4235 Cytochrome c biogenesi 98.2 2.5E-05 5.4E-10 89.3 15.7 118 1618-1737 138-260 (287)
247 cd04460 S1_RpoE S1_RpoE: RpoE, 98.2 4.8E-06 1E-10 82.1 8.8 76 1255-1331 1-92 (99)
248 PRK10866 outer membrane biogen 98.2 0.00027 5.9E-09 81.8 24.5 184 1560-1765 31-239 (243)
249 PRK09202 nusA transcription el 98.2 2.6E-06 5.6E-11 105.8 7.7 107 417-531 86-200 (470)
250 KOG0553 TPR repeat-containing 98.2 1.5E-05 3.2E-10 90.3 12.8 128 1644-1773 90-221 (304)
251 cd04455 S1_NusA S1_NusA: N-uti 98.2 6.9E-06 1.5E-10 74.5 8.4 63 635-704 2-66 (67)
252 cd00189 TPR Tetratricopeptide 98.2 2E-05 4.3E-10 75.7 12.2 96 1638-1735 3-99 (100)
253 PF08424 NRDE-2: NRDE-2, neces 98.2 8.3E-05 1.8E-09 90.0 20.2 147 1657-1805 7-184 (321)
254 PRK04163 exosome complex RNA-b 98.2 1.7E-05 3.8E-10 90.6 13.2 103 417-531 28-137 (235)
255 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.7E-05 8.1E-10 78.5 14.6 103 1637-1739 4-111 (119)
256 PF09976 TPR_21: Tetratricopep 98.1 5.6E-05 1.2E-09 80.6 16.1 118 1647-1765 23-145 (145)
257 KOG0548 Molecular co-chaperone 98.1 0.00036 7.8E-09 84.6 24.2 219 1541-1766 238-488 (539)
258 PF13525 YfiO: Outer membrane 98.1 0.0003 6.5E-09 79.5 22.5 177 1560-1758 4-198 (203)
259 cd04455 S1_NusA S1_NusA: N-uti 98.1 1.3E-05 2.9E-10 72.6 9.0 63 1252-1321 2-66 (67)
260 PRK04841 transcriptional regul 98.1 0.00058 1.2E-08 96.0 30.0 265 1540-1807 465-763 (903)
261 PRK09202 nusA transcription el 98.1 2.7E-06 5.8E-11 105.6 5.4 119 312-443 72-201 (470)
262 PRK15363 pathogenicity island 98.1 0.00012 2.6E-09 76.7 16.2 97 1636-1734 36-133 (157)
263 COG1095 RPB7 DNA-directed RNA 98.1 1.1E-05 2.4E-10 85.1 8.3 77 1342-1420 80-172 (183)
264 cd00189 TPR Tetratricopeptide 98.1 3.9E-05 8.4E-10 73.6 11.8 94 1671-1766 2-96 (100)
265 TIGR00448 rpoE DNA-directed RN 98.0 1.6E-05 3.6E-10 87.3 9.8 78 1341-1420 79-172 (179)
266 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 6.5E-05 1.4E-09 91.8 15.9 106 1619-1728 186-292 (395)
267 PLN03088 SGT1, suppressor of 98.0 6.3E-05 1.4E-09 92.5 16.0 107 1672-1782 5-113 (356)
268 TIGR02795 tol_pal_ybgF tol-pal 98.0 7E-05 1.5E-09 76.4 13.8 104 1669-1774 2-110 (119)
269 KOG1127 TPR repeat-containing 98.0 7.4E-05 1.6E-09 95.1 15.7 187 1541-1736 472-662 (1238)
270 COG4235 Cytochrome c biogenesi 98.0 0.00011 2.3E-09 84.3 15.6 119 1651-1772 138-260 (287)
271 TIGR02063 RNase_R ribonuclease 98.0 1.9E-05 4.1E-10 105.7 10.0 76 1338-1413 622-708 (709)
272 PF09976 TPR_21: Tetratricopep 97.9 0.00025 5.5E-09 75.5 16.1 135 1649-1802 6-145 (145)
273 KOG1067 Predicted RNA-binding 97.9 8.5E-06 1.8E-10 97.0 4.9 75 632-706 664-738 (760)
274 COG3898 Uncharacterized membra 97.9 0.006 1.3E-07 71.1 27.2 144 1651-1803 245-391 (531)
275 PRK10803 tol-pal system protei 97.9 0.00014 3.1E-09 84.7 14.8 104 1636-1739 143-252 (263)
276 PRK04841 transcriptional regul 97.9 0.0021 4.6E-08 90.3 29.6 238 1567-1807 458-723 (903)
277 KOG0553 TPR repeat-containing 97.9 0.00026 5.7E-09 80.4 16.1 108 1676-1789 88-197 (304)
278 TIGR00448 rpoE DNA-directed RN 97.9 3.6E-05 7.7E-10 84.7 9.1 74 636-710 81-170 (179)
279 KOG2376 Signal recognition par 97.9 0.0046 1E-07 75.8 26.6 242 1556-1804 169-487 (652)
280 cd05791 S1_CSL4 S1_CSL4: CSL4, 97.9 4.5E-05 9.8E-10 73.6 8.0 74 1341-1416 4-87 (92)
281 PRK11642 exoribonuclease R; Pr 97.9 3.5E-05 7.7E-10 102.7 9.7 74 1341-1414 641-725 (813)
282 KOG2376 Signal recognition par 97.9 0.0049 1.1E-07 75.6 26.6 243 1556-1809 105-451 (652)
283 KOG3617 WD40 and TPR repeat-co 97.8 0.0013 2.8E-08 82.0 21.8 224 1559-1801 755-1048(1416)
284 KOG0548 Molecular co-chaperone 97.8 0.0019 4.1E-08 78.6 22.8 195 1568-1774 231-460 (539)
285 PRK02603 photosystem I assembl 97.8 0.00045 9.8E-09 76.0 16.3 101 1671-1773 37-153 (172)
286 PF13432 TPR_16: Tetratricopep 97.8 4.4E-05 9.5E-10 68.9 6.8 58 1709-1766 2-59 (65)
287 PRK11906 transcriptional regul 97.8 0.00081 1.8E-08 81.7 19.1 174 1555-1729 242-432 (458)
288 PRK15363 pathogenicity island 97.8 0.00057 1.2E-08 71.7 15.3 100 1599-1700 34-135 (157)
289 PF14938 SNAP: Soluble NSF att 97.8 0.00037 7.9E-09 83.2 16.1 118 1650-1767 89-225 (282)
290 PRK10153 DNA-binding transcrip 97.8 0.00084 1.8E-08 86.0 20.3 111 1684-1800 400-510 (517)
291 PF13414 TPR_11: TPR repeat; P 97.8 0.0001 2.2E-09 67.4 8.8 65 1669-1735 3-69 (69)
292 KOG0550 Molecular chaperone (D 97.8 0.0011 2.4E-08 77.8 18.8 160 1541-1702 183-355 (486)
293 CHL00033 ycf3 photosystem I as 97.8 0.00031 6.7E-09 77.0 14.0 116 1651-1766 15-141 (168)
294 TIGR02063 RNase_R ribonuclease 97.8 5.7E-05 1.2E-09 101.2 9.6 72 634-705 625-708 (709)
295 TIGR00358 3_prime_RNase VacB a 97.8 6.5E-05 1.4E-09 99.2 9.8 74 1340-1413 569-653 (654)
296 cd05791 S1_CSL4 S1_CSL4: CSL4, 97.8 7.8E-05 1.7E-09 72.0 7.8 74 1251-1325 4-87 (92)
297 PRK11906 transcriptional regul 97.7 0.00089 1.9E-08 81.3 18.2 112 1683-1799 319-431 (458)
298 PRK10803 tol-pal system protei 97.7 0.00052 1.1E-08 80.1 15.9 104 1668-1773 141-250 (263)
299 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00061 1.3E-08 83.5 16.9 125 1636-1765 170-295 (395)
300 PRK08563 DNA-directed RNA poly 97.7 0.00012 2.7E-09 81.2 10.1 77 1341-1419 79-171 (187)
301 TIGR01953 NusA transcription t 97.7 4.3E-05 9.4E-10 91.3 6.7 122 589-725 80-209 (341)
302 PF14938 SNAP: Soluble NSF att 97.7 0.00088 1.9E-08 80.0 17.8 201 1562-1766 36-265 (282)
303 KOG0543 FKBP-type peptidyl-pro 97.7 0.00046 1E-08 81.7 14.6 140 1605-1766 213-354 (397)
304 PF04733 Coatomer_E: Coatomer 97.7 0.00031 6.6E-09 83.5 13.4 156 1570-1739 111-271 (290)
305 KOG2053 Mitochondrial inherita 97.7 0.011 2.5E-07 75.8 27.5 219 1541-1766 23-254 (932)
306 PF12895 Apc3: Anaphase-promot 97.7 9.6E-05 2.1E-09 70.6 7.3 81 1683-1764 4-84 (84)
307 COG0457 NrfG FOG: TPR repeat [ 97.7 0.038 8.2E-07 62.2 30.2 216 1544-1766 40-264 (291)
308 PRK02603 photosystem I assembl 97.7 0.0015 3.3E-08 71.8 17.8 115 1600-1738 35-154 (172)
309 CHL00033 ycf3 photosystem I as 97.7 0.00049 1.1E-08 75.4 13.7 98 1619-1718 16-120 (168)
310 PF13432 TPR_16: Tetratricopep 97.7 0.00016 3.4E-09 65.3 8.2 62 1674-1737 2-64 (65)
311 TIGR01953 NusA transcription t 97.7 7.2E-05 1.6E-09 89.5 7.6 108 416-531 82-198 (341)
312 KOG3785 Uncharacterized conser 97.7 0.0027 5.9E-08 72.6 19.4 218 1535-1763 30-310 (557)
313 PF13414 TPR_11: TPR repeat; P 97.6 0.00016 3.4E-09 66.2 7.3 63 1704-1766 3-66 (69)
314 KOG3617 WD40 and TPR repeat-co 97.6 0.0071 1.5E-07 75.8 23.3 32 1776-1807 1081-1112(1416)
315 PF14559 TPR_19: Tetratricopep 97.6 0.00017 3.8E-09 65.6 7.6 51 1716-1766 3-53 (68)
316 PF14559 TPR_19: Tetratricopep 97.6 0.00017 3.8E-09 65.6 7.4 65 1680-1746 2-67 (68)
317 COG5191 Uncharacterized conser 97.6 0.0001 2.2E-09 82.7 6.7 91 1691-1786 96-187 (435)
318 KOG1067 Predicted RNA-binding 97.6 5.7E-05 1.2E-09 90.2 5.0 78 457-534 665-742 (760)
319 PRK12327 nusA transcription el 97.6 0.00011 2.4E-09 88.4 7.1 106 417-530 86-199 (362)
320 PRK10153 DNA-binding transcrip 97.6 0.0044 9.6E-08 79.5 22.1 155 1547-1738 323-487 (517)
321 COG5191 Uncharacterized conser 97.6 8.1E-05 1.8E-09 83.4 5.5 155 1576-1750 32-188 (435)
322 COG0457 NrfG FOG: TPR repeat [ 97.6 0.061 1.3E-06 60.5 29.6 224 1574-1805 36-266 (291)
323 KOG3785 Uncharacterized conser 97.6 0.0024 5.2E-08 73.0 16.8 169 1572-1749 33-230 (557)
324 PRK11642 exoribonuclease R; Pr 97.5 0.00021 4.6E-09 95.5 9.6 72 635-706 642-725 (813)
325 PF12688 TPR_5: Tetratrico pep 97.5 0.0025 5.4E-08 64.8 15.0 97 1670-1766 2-103 (120)
326 COG1095 RPB7 DNA-directed RNA 97.5 0.00026 5.7E-09 74.9 7.9 74 1253-1327 81-170 (183)
327 PF12895 Apc3: Anaphase-promot 97.5 0.00035 7.6E-09 66.7 8.2 80 1648-1730 2-84 (84)
328 PF04733 Coatomer_E: Coatomer 97.5 0.0017 3.8E-08 77.1 15.6 136 1635-1774 131-270 (290)
329 PHA02858 EIF2a-like PKR inhibi 97.5 0.00031 6.7E-09 63.6 6.9 72 1340-1413 13-85 (86)
330 TIGR00358 3_prime_RNase VacB a 97.5 0.00032 6.9E-09 92.7 10.0 71 1252-1322 571-653 (654)
331 PF13525 YfiO: Outer membrane 97.5 0.01 2.2E-07 67.1 20.7 155 1638-1794 8-197 (203)
332 PRK08563 DNA-directed RNA poly 97.4 0.00055 1.2E-08 76.1 9.8 76 1252-1328 80-171 (187)
333 COG4105 ComL DNA uptake lipopr 97.4 0.025 5.3E-07 64.0 22.0 184 1560-1766 33-231 (254)
334 KOG0543 FKBP-type peptidyl-pro 97.4 0.0016 3.5E-08 77.2 13.1 98 1636-1735 258-357 (397)
335 PRK12327 nusA transcription el 97.3 0.00023 5E-09 85.6 5.8 122 590-725 84-211 (362)
336 COG4700 Uncharacterized protei 97.3 0.023 4.9E-07 60.1 19.2 121 1668-1793 88-211 (251)
337 cd04462 S1_RNAPII_Rpb7 S1_RNAP 97.3 0.0014 3E-08 62.7 9.4 64 1343-1408 1-75 (88)
338 KOG3081 Vesicle coat complex C 97.3 0.031 6.8E-07 62.7 21.1 183 1559-1766 105-293 (299)
339 COG1729 Uncharacterized protei 97.3 0.0041 8.9E-08 70.8 14.7 98 1645-1742 151-253 (262)
340 PRK10866 outer membrane biogen 97.3 0.038 8.2E-07 64.2 23.0 161 1636-1798 33-235 (243)
341 PF13371 TPR_9: Tetratricopept 97.2 0.0016 3.5E-08 60.2 8.5 52 1715-1766 6-57 (73)
342 PF08311 Mad3_BUB1_I: Mad3/BUB 97.2 0.0035 7.6E-08 64.6 11.6 109 1687-1802 4-126 (126)
343 KOG4234 TPR repeat-containing 97.2 0.014 3.1E-07 62.3 15.9 101 1569-1671 103-204 (271)
344 PF13428 TPR_14: Tetratricopep 97.1 0.00083 1.8E-08 55.3 5.3 42 1705-1746 2-43 (44)
345 cd05700 S1_Rrp5_repeat_hs9 S1_ 97.1 0.0034 7.5E-08 52.6 8.4 64 750-813 1-65 (65)
346 cd05701 S1_Rrp5_repeat_hs10 S1 97.1 0.00058 1.3E-08 57.9 3.7 58 847-904 2-60 (69)
347 PF13371 TPR_9: Tetratricopept 97.0 0.0024 5.1E-08 59.0 8.2 69 1676-1746 2-71 (73)
348 PHA02858 EIF2a-like PKR inhibi 97.0 0.0017 3.7E-08 59.0 6.4 69 1252-1322 15-85 (86)
349 KOG4648 Uncharacterized conser 97.0 0.0024 5.2E-08 72.7 8.9 107 1640-1748 102-209 (536)
350 COG1107 Archaea-specific RecJ- 97.0 0.0042 9E-08 75.6 11.0 158 629-813 115-282 (715)
351 PF08311 Mad3_BUB1_I: Mad3/BUB 96.9 0.0083 1.8E-07 61.8 11.9 106 1654-1765 4-126 (126)
352 PRK15331 chaperone protein Sic 96.9 0.034 7.5E-07 58.9 16.4 98 1640-1740 42-140 (165)
353 KOG1585 Protein required for f 96.9 0.25 5.4E-06 54.9 23.1 140 1643-1799 99-251 (308)
354 PRK05054 exoribonuclease II; P 96.9 0.0024 5.2E-08 84.1 9.7 70 1344-1413 562-643 (644)
355 cd04462 S1_RNAPII_Rpb7 S1_RNAP 96.9 0.0046 9.9E-08 59.2 8.8 62 1253-1315 1-73 (88)
356 PF13512 TPR_18: Tetratricopep 96.9 0.016 3.4E-07 60.0 13.2 73 1668-1740 9-83 (142)
357 PF12688 TPR_5: Tetratrico pep 96.9 0.021 4.6E-07 58.1 13.9 93 1602-1696 3-103 (120)
358 PF13512 TPR_18: Tetratricopep 96.9 0.018 3.9E-07 59.7 13.3 102 1638-1739 13-134 (142)
359 COG1096 Predicted RNA-binding 96.8 0.0089 1.9E-07 63.5 11.0 75 1338-1415 59-142 (188)
360 PTZ00162 DNA-directed RNA poly 96.7 0.0077 1.7E-07 65.6 9.7 78 1341-1420 79-170 (176)
361 KOG1464 COP9 signalosome, subu 96.6 0.1 2.2E-06 58.2 17.7 206 1542-1752 42-286 (440)
362 KOG2053 Mitochondrial inherita 96.6 0.6 1.3E-05 60.8 26.5 220 1573-1802 21-253 (932)
363 COG1729 Uncharacterized protei 96.6 0.021 4.5E-07 65.2 12.4 93 1679-1773 151-248 (262)
364 KOG4555 TPR repeat-containing 96.6 0.024 5.2E-07 56.4 11.0 93 1674-1768 48-145 (175)
365 PF10447 EXOSC1: Exosome compo 96.6 0.0063 1.4E-07 56.8 6.8 61 1342-1402 3-82 (82)
366 COG3898 Uncharacterized membra 96.5 0.78 1.7E-05 54.2 24.8 218 1541-1766 168-391 (531)
367 PRK15331 chaperone protein Sic 96.5 0.036 7.9E-07 58.7 13.1 96 1600-1697 37-134 (165)
368 COG4105 ComL DNA uptake lipopr 96.5 0.2 4.4E-06 56.8 19.7 158 1636-1796 35-225 (254)
369 COG4785 NlpI Lipoprotein NlpI, 96.5 0.13 2.7E-06 56.0 16.9 51 1543-1593 81-131 (297)
370 KOG3081 Vesicle coat complex C 96.5 0.28 6E-06 55.5 20.0 108 1643-1754 145-257 (299)
371 PRK12328 nusA transcription el 96.5 0.0047 1E-07 73.8 6.7 122 590-725 88-217 (374)
372 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.024 5.1E-07 69.3 12.4 70 1665-1734 71-142 (453)
373 KOG1856 Transcription elongati 96.4 0.0028 6.2E-08 82.5 4.9 78 633-710 982-1062(1299)
374 PF06552 TOM20_plant: Plant sp 96.4 0.026 5.7E-07 60.2 11.0 92 1651-1744 7-120 (186)
375 KOG4555 TPR repeat-containing 96.4 0.047 1E-06 54.4 11.9 93 1644-1736 52-147 (175)
376 PF13428 TPR_14: Tetratricopep 96.3 0.0094 2E-07 49.0 6.0 41 1637-1677 3-43 (44)
377 COG1097 RRP4 RNA-binding prote 96.3 0.019 4.1E-07 63.8 10.0 74 1251-1325 62-139 (239)
378 KOG2916 Translation initiation 96.3 0.003 6.4E-08 69.5 3.6 75 1341-1415 14-89 (304)
379 KOG1586 Protein required for f 96.3 0.5 1.1E-05 52.3 20.2 130 1636-1766 75-223 (288)
380 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.073 1.6E-06 65.1 15.3 62 1636-1697 76-141 (453)
381 KOG4340 Uncharacterized conser 96.2 0.21 4.6E-06 56.6 17.4 69 1698-1766 138-206 (459)
382 KOG1941 Acetylcholine receptor 96.2 0.37 7.9E-06 56.2 19.7 183 1578-1766 57-274 (518)
383 COG1097 RRP4 RNA-binding prote 96.2 0.075 1.6E-06 59.2 13.8 103 417-531 29-138 (239)
384 KOG4234 TPR repeat-containing 96.2 0.041 8.8E-07 58.9 11.0 95 1605-1701 100-201 (271)
385 PF08631 SPO22: Meiosis protei 96.2 2.5 5.4E-05 50.4 27.7 227 1572-1803 4-274 (278)
386 COG1107 Archaea-specific RecJ- 96.1 0.023 4.9E-07 69.6 9.9 147 453-612 115-278 (715)
387 PRK05054 exoribonuclease II; P 96.1 0.014 3.1E-07 76.9 9.2 71 635-705 558-643 (644)
388 TIGR02062 RNase_B exoribonucle 96.1 0.013 2.9E-07 77.0 8.5 69 1344-1412 558-638 (639)
389 COG0557 VacB Exoribonuclease R 96.0 0.013 2.9E-07 78.5 8.6 76 1338-1413 617-703 (706)
390 PTZ00162 DNA-directed RNA poly 96.0 0.018 4E-07 62.7 7.9 71 372-443 80-166 (176)
391 TIGR00757 RNaseEG ribonuclease 96.0 0.015 3.2E-07 72.1 7.9 73 1340-1413 22-108 (414)
392 cd05790 S1_Rrp40 S1_Rrp40: Rrp 96.0 0.039 8.5E-07 52.2 8.8 71 1252-1324 5-75 (86)
393 smart00386 HAT HAT (Half-A-TPR 95.9 0.013 2.8E-07 44.4 4.6 32 1718-1749 1-32 (33)
394 PF13509 S1_2: S1 domain; PDB: 95.9 0.031 6.7E-07 49.6 7.4 60 461-530 2-61 (61)
395 cd05790 S1_Rrp40 S1_Rrp40: Rrp 95.9 0.039 8.4E-07 52.2 8.3 73 1341-1416 4-76 (86)
396 PF13509 S1_2: S1 domain; PDB: 95.8 0.022 4.7E-07 50.5 6.2 60 373-441 1-61 (61)
397 COG4785 NlpI Lipoprotein NlpI, 95.8 0.81 1.8E-05 50.0 18.8 194 1598-1803 63-265 (297)
398 COG1096 Predicted RNA-binding 95.8 0.075 1.6E-06 56.7 10.8 105 416-531 25-142 (188)
399 COG3118 Thioredoxin domain-con 95.8 0.58 1.2E-05 54.1 18.5 151 1643-1799 142-296 (304)
400 KOG2916 Translation initiation 95.7 0.012 2.7E-07 64.8 4.8 76 635-710 15-92 (304)
401 PRK12328 nusA transcription el 95.7 0.033 7.2E-07 66.7 8.9 106 417-530 90-205 (374)
402 TIGR00757 RNaseEG ribonuclease 95.7 0.025 5.4E-07 70.1 8.0 60 1251-1310 23-96 (414)
403 KOG3616 Selective LIM binding 95.6 0.8 1.7E-05 57.4 20.2 151 1636-1798 662-847 (1636)
404 PF02259 FAT: FAT domain; Int 95.6 1.5 3.3E-05 54.0 24.1 119 1666-1787 143-304 (352)
405 KOG1856 Transcription elongati 95.6 0.012 2.6E-07 77.1 5.0 80 1249-1328 981-1063(1299)
406 smart00777 Mad3_BUB1_I Mad3/BU 95.6 0.13 2.7E-06 52.6 11.3 57 1737-1800 68-124 (125)
407 KOG2471 TPR repeat-containing 95.5 0.96 2.1E-05 54.8 19.7 122 1559-1682 238-382 (696)
408 PF13431 TPR_17: Tetratricopep 95.5 0.016 3.5E-07 44.7 3.6 33 1550-1582 2-34 (34)
409 KOG1941 Acetylcholine receptor 95.5 1.1 2.4E-05 52.5 19.4 235 1571-1807 93-363 (518)
410 PF10447 EXOSC1: Exosome compo 95.4 0.037 8E-07 51.8 6.4 60 1252-1311 3-82 (82)
411 PF13424 TPR_12: Tetratricopep 95.3 0.037 8E-07 51.8 6.3 62 1705-1766 6-74 (78)
412 PF03704 BTAD: Bacterial trans 95.3 0.25 5.4E-06 52.6 13.3 105 1643-1766 14-124 (146)
413 TIGR02062 RNase_B exoribonucle 95.3 0.042 9.1E-07 72.5 8.6 68 637-704 558-638 (639)
414 KOG4340 Uncharacterized conser 95.2 0.17 3.7E-06 57.3 11.7 144 1619-1766 27-172 (459)
415 KOG2041 WD40 repeat protein [G 95.2 0.84 1.8E-05 57.2 18.3 184 1555-1763 687-877 (1189)
416 smart00777 Mad3_BUB1_I Mad3/BU 95.2 0.22 4.7E-06 50.9 11.5 25 1738-1762 99-123 (125)
417 KOG1586 Protein required for f 95.1 1.2 2.6E-05 49.5 17.4 123 1617-1739 88-230 (288)
418 KOG1464 COP9 signalosome, subu 95.1 0.56 1.2E-05 52.5 14.9 151 1617-1767 42-220 (440)
419 COG3118 Thioredoxin domain-con 95.0 1 2.2E-05 52.1 17.3 119 1540-1665 147-266 (304)
420 PF13424 TPR_12: Tetratricopep 94.9 0.08 1.7E-06 49.5 7.2 28 1636-1663 6-33 (78)
421 KOG2796 Uncharacterized conser 94.9 2.6 5.6E-05 47.6 19.3 165 1637-1801 179-350 (366)
422 PF13431 TPR_17: Tetratricopep 94.8 0.03 6.5E-07 43.2 3.3 32 1727-1758 2-33 (34)
423 COG0557 VacB Exoribonuclease R 94.8 0.063 1.4E-06 72.1 8.4 72 634-705 620-703 (706)
424 PF04184 ST7: ST7 protein; In 94.8 1.8 4E-05 53.3 19.5 174 1617-1804 183-375 (539)
425 PF10300 DUF3808: Protein of u 94.6 1 2.2E-05 57.7 18.2 149 1617-1766 203-375 (468)
426 PF02184 HAT: HAT (Half-A-TPR) 94.6 0.035 7.5E-07 41.4 2.8 29 1754-1786 3-31 (32)
427 KOG1130 Predicted G-alpha GTPa 94.5 2.2 4.7E-05 50.8 18.5 185 1571-1766 27-263 (639)
428 KOG1585 Protein required for f 94.4 1.6 3.5E-05 48.8 16.4 142 1603-1761 94-250 (308)
429 KOG4648 Uncharacterized conser 94.4 0.13 2.9E-06 59.1 8.4 106 1674-1784 102-208 (536)
430 KOG2796 Uncharacterized conser 94.4 0.95 2.1E-05 50.9 14.7 131 1565-1701 181-319 (366)
431 PRK12329 nusA transcription el 94.3 0.13 2.9E-06 62.6 8.8 70 1133-1222 151-226 (449)
432 PF13281 DUF4071: Domain of un 94.3 2 4.4E-05 52.4 18.6 161 1602-1767 143-334 (374)
433 PF02184 HAT: HAT (Half-A-TPR) 94.3 0.067 1.4E-06 39.9 3.7 30 1719-1749 2-31 (32)
434 PF02259 FAT: FAT domain; Int 94.2 3 6.5E-05 51.4 21.2 190 1558-1750 68-304 (352)
435 PF04184 ST7: ST7 protein; In 94.2 2.9 6.2E-05 51.7 19.4 184 1571-1774 178-380 (539)
436 PRK12329 nusA transcription el 94.1 0.17 3.6E-06 61.8 9.0 107 417-530 102-224 (449)
437 KOG3616 Selective LIM binding 94.0 3.7 8.1E-05 51.8 20.0 37 1769-1805 876-912 (1636)
438 PF06552 TOM20_plant: Plant sp 94.0 0.45 9.8E-06 51.1 10.9 96 1683-1784 6-122 (186)
439 PF07719 TPR_2: Tetratricopept 93.8 0.14 3.1E-06 39.1 5.1 33 1705-1737 2-34 (34)
440 KOG2610 Uncharacterized conser 93.8 1.8 3.9E-05 50.3 15.7 156 1540-1700 116-280 (491)
441 KOG0890 Protein kinase of the 93.7 8.7 0.00019 55.8 25.1 231 1560-1797 1628-1913(2382)
442 PF10300 DUF3808: Protein of u 93.7 1.7 3.7E-05 55.7 17.7 162 1641-1808 194-380 (468)
443 KOG4642 Chaperone-dependent E3 93.3 0.65 1.4E-05 51.7 10.9 97 1649-1747 24-126 (284)
444 KOG0985 Vesicle coat protein c 93.1 7 0.00015 51.6 20.8 77 1573-1665 1087-1163(1666)
445 smart00386 HAT HAT (Half-A-TPR 93.1 0.16 3.5E-06 38.2 4.4 30 1650-1679 2-31 (33)
446 PF13281 DUF4071: Domain of un 93.1 5.9 0.00013 48.4 19.6 174 1560-1737 140-338 (374)
447 KOG0545 Aryl-hydrocarbon recep 93.0 2.4 5.2E-05 47.4 14.5 111 1570-1702 187-298 (329)
448 PF04910 Tcf25: Transcriptiona 92.6 1.9 4.1E-05 53.2 15.1 175 1548-1739 27-228 (360)
449 PF03704 BTAD: Bacterial trans 92.3 2.4 5.3E-05 44.9 13.9 110 1683-1809 21-130 (146)
450 PF07719 TPR_2: Tetratricopept 92.2 0.32 6.9E-06 37.1 5.0 31 1670-1700 2-33 (34)
451 PF00515 TPR_1: Tetratricopept 91.6 0.32 7E-06 37.2 4.5 32 1705-1736 2-33 (34)
452 PRK10811 rne ribonuclease E; R 91.4 0.41 8.9E-06 63.2 7.6 69 1252-1320 37-116 (1068)
453 PF00515 TPR_1: Tetratricopept 91.4 0.37 7.9E-06 36.9 4.5 31 1670-1700 2-33 (34)
454 PF08631 SPO22: Meiosis protei 91.2 39 0.00084 40.3 24.8 204 1561-1766 35-274 (278)
455 PRK10811 rne ribonuclease E; R 91.2 0.42 9E-06 63.1 7.3 69 1342-1411 37-116 (1068)
456 PF13174 TPR_6: Tetratricopept 91.0 0.35 7.7E-06 36.5 4.1 32 1706-1737 2-33 (33)
457 PF10345 Cohesin_load: Cohesin 91.0 17 0.00036 48.6 22.5 180 1579-1761 39-248 (608)
458 KOG3824 Huntingtin interacting 90.9 1.1 2.4E-05 51.2 9.4 50 1717-1766 129-178 (472)
459 COG2909 MalT ATP-dependent tra 90.9 38 0.00083 45.2 24.1 238 1560-1800 414-684 (894)
460 COG2909 MalT ATP-dependent tra 90.8 57 0.0012 43.7 25.5 182 1561-1755 347-554 (894)
461 KOG2610 Uncharacterized conser 90.7 14 0.0003 43.4 17.7 117 1647-1763 115-234 (491)
462 KOG0545 Aryl-hydrocarbon recep 90.4 4.7 0.0001 45.2 13.3 68 1705-1774 231-298 (329)
463 KOG0530 Protein farnesyltransf 90.2 33 0.00073 39.3 19.8 228 1541-1779 57-307 (318)
464 COG1747 Uncharacterized N-term 90.1 32 0.0007 42.7 20.9 145 1619-1766 83-233 (711)
465 KOG4642 Chaperone-dependent E3 89.9 1.7 3.7E-05 48.5 9.5 100 1683-1784 25-126 (284)
466 KOG0985 Vesicle coat protein c 89.8 37 0.0008 45.5 22.2 59 1559-1629 1102-1160(1666)
467 COG2976 Uncharacterized protei 89.3 28 0.0006 38.4 17.7 145 1603-1766 36-187 (207)
468 KOG0530 Protein farnesyltransf 89.2 9.8 0.00021 43.4 14.7 189 1590-1787 35-233 (318)
469 KOG0376 Serine-threonine phosp 89.1 0.59 1.3E-05 57.3 5.9 116 1644-1766 13-129 (476)
470 KOG1538 Uncharacterized conser 89.0 10 0.00022 47.8 15.9 50 1746-1801 781-830 (1081)
471 KOG3298 DNA-directed RNA polym 88.9 1.6 3.4E-05 45.5 7.9 66 1342-1409 80-156 (170)
472 KOG2471 TPR repeat-containing 88.9 4.1 8.8E-05 49.7 12.3 144 1637-1783 208-377 (696)
473 KOG1308 Hsp70-interacting prot 88.8 1 2.3E-05 52.8 7.3 127 1530-1663 117-243 (377)
474 PRK11712 ribonuclease G; Provi 88.7 0.83 1.8E-05 57.9 7.1 72 1340-1412 35-120 (489)
475 PRK11712 ribonuclease G; Provi 88.0 1 2.2E-05 57.1 7.2 59 1252-1310 37-109 (489)
476 PF10602 RPN7: 26S proteasome 87.8 9.4 0.0002 42.1 13.8 100 1636-1735 37-144 (177)
477 KOG2422 Uncharacterized conser 87.8 15 0.00032 46.3 16.3 145 1553-1699 276-450 (665)
478 PF04910 Tcf25: Transcriptiona 87.7 13 0.00028 45.9 16.4 131 1629-1766 33-167 (360)
479 PF08292 RNA_pol_Rbc25: RNA po 87.5 2 4.3E-05 43.9 7.6 60 1253-1312 3-75 (122)
480 KOG3409 Exosomal 3'-5' exoribo 87.5 1.3 2.9E-05 46.4 6.3 68 372-439 67-145 (193)
481 PF10345 Cohesin_load: Cohesin 87.5 1.2E+02 0.0026 40.7 26.7 187 1619-1807 38-257 (608)
482 PF11207 DUF2989: Protein of u 87.4 12 0.00026 41.5 13.9 73 1651-1723 122-197 (203)
483 COG4649 Uncharacterized protei 87.3 43 0.00093 36.1 17.0 138 1646-1783 69-212 (221)
484 KOG1130 Predicted G-alpha GTPa 87.2 9.4 0.0002 45.7 13.6 148 1612-1761 29-218 (639)
485 PF13181 TPR_8: Tetratricopept 86.8 1.1 2.5E-05 34.1 4.3 31 1705-1735 2-32 (34)
486 PF13174 TPR_6: Tetratricopept 86.8 1.2 2.7E-05 33.4 4.5 32 1637-1668 2-33 (33)
487 KOG3298 DNA-directed RNA polym 86.7 3.7 7.9E-05 43.0 8.9 60 1253-1313 81-151 (170)
488 PF10246 MRP-S35: Mitochondria 86.4 2 4.4E-05 41.3 6.4 54 844-904 22-75 (104)
489 PF10602 RPN7: 26S proteasome 86.4 13 0.00028 41.0 13.9 100 1562-1665 37-143 (177)
490 PF10246 MRP-S35: Mitochondria 86.3 2.4 5.3E-05 40.8 6.9 60 364-431 15-74 (104)
491 PF08292 RNA_pol_Rbc25: RNA po 86.2 2.7 5.8E-05 43.0 7.7 59 373-431 3-74 (122)
492 KOG2422 Uncharacterized conser 85.7 26 0.00056 44.3 16.9 159 1573-1736 250-451 (665)
493 KOG3409 Exosomal 3'-5' exoribo 85.6 3.8 8.2E-05 43.1 8.4 73 1036-1109 66-146 (193)
494 PF04053 Coatomer_WDAD: Coatom 84.9 23 0.0005 44.9 16.9 140 1635-1808 295-435 (443)
495 COG2976 Uncharacterized protei 84.8 24 0.00051 38.9 14.2 136 1649-1804 48-188 (207)
496 KOG2300 Uncharacterized conser 84.5 36 0.00079 42.1 17.0 111 1618-1728 25-151 (629)
497 KOG0890 Protein kinase of the 84.4 1.2E+02 0.0027 45.0 24.5 134 1669-1805 1629-1785(2382)
498 KOG2300 Uncharacterized conser 84.3 1.2E+02 0.0026 37.9 24.4 220 1573-1800 287-552 (629)
499 KOG0687 26S proteasome regulat 83.8 64 0.0014 38.2 17.8 176 1603-1802 20-208 (393)
500 KOG1308 Hsp70-interacting prot 83.7 0.68 1.5E-05 54.2 2.4 80 1618-1697 130-211 (377)
No 1
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=100.00 E-value=1e-176 Score=1628.92 Aligned_cols=1540 Identities=38% Similarity=0.576 Sum_probs=1262.1
Q ss_pred CCCCCcCcCcEEEEEEEEEecccEEEEcCCCcEEEEeccccCChhccccccccccCCCCCcccCCCEEEEEEEEeecccc
Q 000236 1 MYPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKK 80 (1810)
Q Consensus 1 ~~~~~l~~G~~~lg~V~~i~~~~~~v~lp~~l~g~v~~~~is~~~~~~~~~~~~~~~l~~~f~~Gq~v~~~V~~~~~~~~ 80 (1810)
++|++++|||++||+|++|+..|+.+|+|++|+|+|+.+++|+.
T Consensus 109 ~~~k~isPG~~llgvIs~i~~~Dl~isv~~~l~g~v~~t~lS~~------------------------------------ 152 (1710)
T KOG1070|consen 109 FQLKNISPGMLLLGVISKINGNDLKISVKGGLNGYVLNTHLSDE------------------------------------ 152 (1710)
T ss_pred ccccccCCcceeeeeeeeccccceeEEccCcccccccccccCHh------------------------------------
Confidence 47899999999999999999999999999999999999999988
Q ss_pred ccCeeEEEEEechhhhccCCCcccccCCcEEEEEEEEEecceEEEEeCCCcceecccCCCCCCCCCCccCCCcEEEEEEE
Q 000236 81 EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 160 (1810)
Q Consensus 81 ~~~~~~~~LS~~p~~vn~~l~~~~l~~g~~l~~~V~sved~G~i~d~G~~~~~gfl~~~~~~~~~~~~~~~G~~~~~~v~ 160 (1810)
.+.+||.|.+.|.|+||||+++|+|+...+||+.+.++. +.+..|++||+++|+|+
T Consensus 153 -----------------------~~~~~~~l~~~v~S~ed~g~~l~~g~~~~~~~~e~~q~p-n~~~~lKvGq~l~~~V~ 208 (1710)
T KOG1070|consen 153 -----------------------MLAAGEVLDTAVVSIEDHGAILDVGLDEITGFIEKSQFP-NLGAKLKVGQWLRVSVT 208 (1710)
T ss_pred -----------------------HhhhhhhhccccccccccccchhcCCccccchhhhccCc-hhhhhcccCceEEEEEE
Confidence 233688999999999999999999999999999999874 33347999999999999
Q ss_pred EEcCCCcEEEEccCccccccccccccccccccccCCCceEEEEEEEEecCeEEEEeCCCeEEEEeccccCCCCCCCCccc
Q 000236 161 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 240 (1810)
Q Consensus 161 ~~~~~~~~v~ls~~~~~~~~~~~~~~~~~~~~~l~pG~~v~~~V~~v~~~gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~ 240 (1810)
++++ + .+.+|..+..+....+++.+.++++.|.|||+|.+.|.+|++||+.++|+++|+|+++..||.+++
T Consensus 209 k~~s-~-~v~ks~~~~~~~t~~~t~~~~~~~~~LvpGt~vqa~V~sv~~~Gi~~dil~~ftG~l~~~hl~~~~------- 279 (1710)
T KOG1070|consen 209 KSTS-E-RVVKSTKFVEVLTLNPTSCNGLALNDLVPGTMVQAEVQSVEDHGITLDILNGFTGFLDKKHLPPFL------- 279 (1710)
T ss_pred eccC-c-eEEecccceeeecccchhccccchhhcCCcceEEEEecceecCcEEEEecccccceeehhhCCchh-------
Confidence 9876 3 888999998888888888889999999999999999999999999999999999999999998774
Q ss_pred cCCCCCEEEEEEEEEeCCCCeEEEeeCchhccCCCCCCCCCCCCeEEeeEEEEEeCCceeEEEeCCCCCcccEEEeeccc
Q 000236 241 DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 320 (1810)
Q Consensus 241 ~~~~G~~v~arVl~~~~~~~~v~LSl~p~~~~~~~~~~~~~~G~iv~~~~V~~v~~~~G~~v~i~~~~~~v~gfv~~s~~ 320 (1810)
.|..||...|.|+. +..+ ...++.++.+..+.+... |+..- +|-+.+
T Consensus 280 ~~~~~~~~l~~vi~--~s~R-------------------v~~~~f~~ka~ki~~l~~-~v~ai-----------~p~~~~ 326 (1710)
T KOG1070|consen 280 RYFENQEKLGKVIH--KSDR-------------------VFVVDFFDKASKILVLKA-GVDAI-----------APSRIE 326 (1710)
T ss_pred hccccHHHhhcccc--hhhh-------------------eeeechhhccceEEEecC-ccceE-----------ccCCcc
Confidence 48888888888643 1111 122333333333333343 44333 333222
Q ss_pred chHHHHhhcccccCCCEEEEEEEEEeecCCeEEEEeecccccccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEe
Q 000236 321 AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 400 (1810)
Q Consensus 321 ~~~~~~~~~~~~~vG~~~~~rV~~~~~~~~~~~~s~k~~~~~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~~~~~v~g~ 400 (1810)
. +-.. ..+++|..++|||+.+..++.++..+++.+.++.++..+.++.||.++.+.| ++..+ ..|+
T Consensus 327 ~---~~~~-e~~k~G~~~K~~vi~~~~~~~~~~~tl~~s~ie~k~~~~s~V~~r~l~~~~~-svdt~---------~~~l 392 (1710)
T KOG1070|consen 327 K---VLSF-EIFKIGNKVKCRVIDVLQMDSLALFTLKESAIEGKFSLVSDVSPRGLLKKPV-SVDTE---------EVGL 392 (1710)
T ss_pred c---ccch-hhcccCceEEEEEEEEeeccceEEeecchhhccCceEEEeccCCceEEEecc-cCChh---------hhhc
Confidence 1 1111 2489999999999999999999999999999999999999999999999998 77664 6789
Q ss_pred ccCCCCCcccccCCCCCcccCCEEEEEEEEEeCCeEEEEEcchhhcchhhHHhhhhhcCCCcEEEEEEEEEeeceEEEEE
Q 000236 401 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 480 (1810)
Q Consensus 401 vp~~~ls~~~~~~~~~~~~vG~~v~~rVl~v~~~~i~ls~k~~l~~~~~~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~ 480 (1810)
+|..|+..+...+|+.+|..|..|.+|||.+..+++.+|+| .+..+++|.+..|.++.+ ..+|++.++.
T Consensus 393 ~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~-v~~~sK~pvis~y~~~~~--~t~~~l~~v~-------- 461 (1710)
T KOG1070|consen 393 SPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLK-VLCVSKLPVISMYADAVK--LTHGMLSKVP-------- 461 (1710)
T ss_pred cccchhhceeecCCCcccccccceeeEEeeccceeeeeeee-eeEeecCcceEEEeeccc--cCcchhhccc--------
Confidence 99999999999999999999999999999999999999999 999999999999988766 6677776665
Q ss_pred cCCeEEEeeccccCCCCCCCCCcCccCCCEEEEEEEEEeCCCCeEEEEEeeCCC--CccccccccCCCeEEEEEEEEecC
Q 000236 481 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPN 558 (1810)
Q Consensus 481 ~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~~--~~~~~~~~~~G~iv~g~V~~v~~~ 558 (1810)
.|++|+ |++|.++.|||.+|-+.++.+.+|+.++.. ......++++|++|+|+|.++++.
T Consensus 462 ----q~~v~~--------------~e~~te~~~rv~~v~~v~~v~~v~~~~svl~lk~~~~nDI~iG~~V~~~I~~vt~~ 523 (1710)
T KOG1070|consen 462 ----QGMVPI--------------YEVGTEVKSRVWQVFYVGKVVIVSVRESVLGLKFLRVNDIEIGQLVPGVIRKVTPQ 523 (1710)
T ss_pred ----cCCCCc--------------eecCCcccCccceecccCcEEEEEEehHhhcccccccccccccceeeeEEEEecCC
Confidence 555554 556666666666666666666666654422 344556799999999999999999
Q ss_pred cEEEEEEecCceeEEEecccccCcccccccccccccCCCeEeeEEEeecCCCeEEEeccchhcchhccCCCccccCCCCC
Q 000236 559 AVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 638 (1810)
Q Consensus 559 g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~i~~vl~id~~~~~v~ls~K~~l~~~~~~~~~~~~~~~~G~ 638 (1810)
|+.|.+. .+++.|++|..||+|++.+.+.+..++..|.++ |+|.++.+.+++.|++|++|++...++|.+|+++.+|+
T Consensus 524 Gv~v~v~-~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~-RVl~~~~~~~~v~l~~K~slv~~~~plp~d~~~~~pg~ 601 (1710)
T KOG1070|consen 524 GVEVLVT-FGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKL-RVLSVNRDRNRVALTLKKSLVNTQLPLPSDFEQAIPGK 601 (1710)
T ss_pred cEEEEEe-cCceeeecChHhhhhcccccccceeeeccccEE-EEEEEEccCCeeEEEechhhhcccCCCccchhhcCCCc
Confidence 9999995 466999999999999999999988888888888 89999999999999999999999889999999999999
Q ss_pred EEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeecccccCCCChhhH
Q 000236 639 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 718 (1810)
Q Consensus 639 ~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~~~~~~~~~ 718 (1810)
++.|++.++.++||||+|+||++||+|.+++++.|+.+++++|.+||||.|+|+++|++++||.|+++.+.|+.++..+.
T Consensus 602 ~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm~l~~r~s~~~~a~~~~~ 681 (1710)
T KOG1070|consen 602 ITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRMPLGLRASSCARACVKRS 681 (1710)
T ss_pred eEEEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhcccccEEEEEEEecCchhceeehhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998744332222
Q ss_pred HHHHHHHHHHHHhhcccCCCcccccccccccccEEEEEEEEeecceeEEEecccCceeEEEeeeeccCc-----------
Q 000236 719 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA----------- 787 (1810)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~g~~v~l~~~~~v~g~i~~~~ls~~----------- 787 (1810)
. +.+..|.+..+.+.+++.+.++|++.+. ++.|++...||.|+
T Consensus 682 ~-------------------------e~~~~g~v~s~~~~~~tkd~viVei~~~-~~~~v~~~~~L~dg~v~~~~~~~~k 735 (1710)
T KOG1070|consen 682 V-------------------------ENFVKGGVKSLKSIDKTKDSVIVEIVDQ-GITGVGVFGELVDGSVVVNKVLENK 735 (1710)
T ss_pred H-------------------------HHhhccccccceeehhccccEEEEccCc-ceEEEEEEEEEccCceEEccchhhh
Confidence 2 3355566777777777777788888774 78888888888763
Q ss_pred --------cccCCCeEEEEEEEeecccceEEEeehhhhhhhhhhcchhhHHhHhhhhhccccccCCcceEEEEEEEEeee
Q 000236 788 --------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN 859 (1810)
Q Consensus 788 --------~~~~G~~v~~~vl~~~~~~~~v~ls~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~g~V~~i~~~ 859 (1810)
.+.+|+...++|++++..++.+.+++++.|...+ .++..|....++|++|...
T Consensus 736 l~~~t~~~~lv~gq~~~~~i~~isl~k~lv~~s~~~~L~~~~-------------------~~l~k~~~~~~~v~~is~~ 796 (1710)
T KOG1070|consen 736 LRKNTSLLHLVVGQVTVGVILSISLKKSLVLISLCTDLPNNA-------------------TKLLKGSYALALVRSISKE 796 (1710)
T ss_pred hhhcchhheeeecceeEEEEEEeehhhhhhhccccccccchH-------------------HHHhcCchhHHHHHhhhhh
Confidence 3678999999999999888888888888776543 3477788889999999999
Q ss_pred eEEEeecCCcceEEEeeeecCC-CCCCCcccccCCCeEEEEEeecCCCCcccceeheehh------------cc-ccccc
Q 000236 860 YLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA------------IS-ETETS 925 (1810)
Q Consensus 860 ~v~v~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~Gq~v~a~V~~~~~~~~~~~~~l~~~~------------~~-~~~~~ 925 (1810)
+.|++| .++++++++.+|.+ ....+......||+|.+....++. ......+.... .. ..+-.
T Consensus 797 ~~~~a~--~~~~i~~v~~s~~v~s~~~d~~~~~y~Q~v~~~~~st~~--~~~~~~~a~e~p~~K~~~~~~~~~~~~~d~~ 872 (1710)
T KOG1070|consen 797 GKFVAF--VSNLIALVKVSHLVDSELDDLTKAEYGQSVTVKLLSTEP--KVVKDLKAVEKPKKKKEKKFIKVSSNDSDNE 872 (1710)
T ss_pred eeheee--cccccceeeccccccccccccceeeeecccceEEEecCh--hHHHHHHhhcchhhccceeEEEeccccCCCc
Confidence 999999 56699999999976 444455667778999999988763 11111111100 00 10111
Q ss_pred cccccccCCCCCCcceEEEEEEEEeCCeEEEEeCCCeeEEEEeeeecCCcCccccCcCcCCCCCCEEEEEEEEeee-c--
Q 000236 926 SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN-K-- 1002 (1810)
Q Consensus 926 ~~~~~~~~~~~~~G~~v~~~V~~i~~~~~~v~l~~~~~G~v~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~~-~-- 1002 (1810)
-..+.++.+++.+|.++.|+|++|++++++|.++.+.+||||++|++|+..++ ..|+++|++|+.|.++|++.+. +
T Consensus 873 Vd~a~k~~~~~~igsiv~a~v~svKp~~L~v~l~~~~~gri~isev~d~~~ei-tDp~~k~~vG~~I~vrviG~~D~k~l 951 (1710)
T KOG1070|consen 873 VDLAIKSTEDLSIGSIVRAYVKSVKPDQLNVLLAANHHGRIHISEVLDNLHEI-TDPLDKFKVGDGIFVRVIGGHDVKDL 951 (1710)
T ss_pred cccccccccceeeeeEEEEEEeeecccceEEeccccccCceehHHhhcccccc-CChhhhcccCCeEEEEEEcCCccccC
Confidence 11345677899999999999999999999999999999999999999988765 4499999999999999999851 0
Q ss_pred ---CCCCCcceEEEEeccCCccccccCCcccccccccCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhh
Q 000236 1003 ---PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1079 (1810)
Q Consensus 1003 ---~~~~~~~~~~lS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~ 1079 (1810)
....+..++|||+||+.++......+ +.. +++.||.|+|+|.++..+++|+.++|.++||||+.+++.+...++
T Consensus 952 pith~i~k~~v~ElSvkps~les~~~~t~-s~~--q~~~gq~vtGfV~nv~ke~~w~~isp~v~~RIplld~s~~~~~le 1028 (1710)
T KOG1070|consen 952 PITHLISKEQVLELSVKPSELESDEFNTT-STK--QFKAGQEVTGFVNNVSKEWLWVRISPFVDGRIPLLDTSLDLHVLE 1028 (1710)
T ss_pred ccccccchhhhhhhccChhhhcccccccc-chh--hhhcCCeEEEEEEccccceeEEEccccccceeeeeeccchhhhhh
Confidence 01233578999999999883321111 222 479999999999999999999999999999999999998888889
Q ss_pred hhcccCCCCcEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCc
Q 000236 1080 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1159 (1810)
Q Consensus 1080 ~~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~ 1159 (1810)
+|.+.|++|+.++++|+..+.. ..+++..... .... ..+|++..|+|.++.++ ++.++++.+
T Consensus 1029 ~~e~~F~~g~al~~~V~~~~~~---~tv~~iG~~~--------~~k~-----~s~G~~l~Grv~kv~~~--~~~l~~~~~ 1090 (1710)
T KOG1070|consen 1029 LPESLFPLGKALDEYVVRNDKS---KTVRAIGFSK--------SDKN-----PSPGDILFGRVSKVLPG--YLILQLPFK 1090 (1710)
T ss_pred CchhhcccccceeeEEecccce---eEEEeccccc--------CCCC-----CCcchhhcceeeeeccc--eeEEecCCc
Confidence 9999999999999999997732 2233222210 0111 12899999999999998 899999999
Q ss_pred eEEEEecc-cccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCCcceEEEeecccccCCCCCCCCCCCCCC
Q 000236 1160 LYGRVHFT-ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1238 (1810)
Q Consensus 1160 ~~G~i~~s-el~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~g~~~l~lS~r~~~~~~~~~~~~~~~~~~ 1238 (1810)
..|+++.. +++++|..+ |...|..++.+.+.+|.++.. ++.++||+|.+++.+. ..
T Consensus 1091 ~~G~~~~i~~~~d~~~~~-----------P~~~f~~~~~v~~~~L~vs~~---n~~leLslr~sr~~~t---------~~ 1147 (1710)
T KOG1070|consen 1091 VFGRVSFIEDMSDSYSMT-----------PVEHFTKIQIVYVCVLSVSAL---NKGLELSLRESRTKIT---------PV 1147 (1710)
T ss_pred cccceEEeeehhccccCC-----------hHHhcccccEEEEEEEEEecc---cccceeecccccccCc---------cc
Confidence 99988855 999999887 889999999999999999876 3449999998873322 22
Q ss_pred CCCcccccccccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEE
Q 000236 1239 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1318 (1810)
Q Consensus 1239 ~~~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri 1318 (1810)
...++.+..++++++|++++|+|.++.+.|+|+.+++++.|+++++++++.+...|+..|++|+.|.++|+++++..+|+
T Consensus 1148 ~~kd~~iks~eDlk~g~iv~G~V~nv~~~glfi~ls~~v~a~v~is~~~ds~~k~w~k~~~~gklv~~rv~~ve~~s~ri 1227 (1710)
T KOG1070|consen 1148 DSKDGSIKSIEDLKIGDIVRGFVKNVETKGLFIALSRKVEAFVPISGLSDSFEKEWEKHLPVGKLVTGRVLSVEEDSKRI 1227 (1710)
T ss_pred cccCCcccchhhcccCceeEEEEEEecCCcEEEEEccceEEEEEccccccchhhhhhccCCccceeeeEEEEeeccCceE
Confidence 34677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeCC-ceeEEEeccccCcccccCcccccCCCCEEEE
Q 000236 1319 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1397 (1810)
Q Consensus 1319 ~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~G~fV~l~~~-~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~ 1397 (1810)
.|+||++....... ......++++|+...|+|.++.+||+||+++++ ++.|+||++++++.+.++....|..|+.|++
T Consensus 1228 el~Lk~s~~~d~~~-~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~~~e~~d~~~e~it~~~~~~~~V~a 1306 (1710)
T KOG1070|consen 1228 ELSLKNSDIKDTVK-LLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCHISEEADDRGENITALYYAGDRVKA 1306 (1710)
T ss_pred EEEEeccccCCchh-hhhhhhhhhccccccceEEEecCCceEEEecCcceecccccceeecchhhhhcccceeccceeee
Confidence 99999987643222 333467999999999999999999999999975 3699999999999999999999999999999
Q ss_pred EEEEEecCCCeeEEeecccccCCCccccccCcccchhhhHhhhcccCcccccccCcccccccccc---ccCCCcccc---
Q 000236 1398 KILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDME---SEDGGSLVL--- 1471 (1810)
Q Consensus 1398 ~I~~id~~~~ri~lslk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--- 1471 (1810)
.+++++.+++||++++|.+|+..+++.......++.-+ ..+... .+. +.++ -++...+..
T Consensus 1307 ~~lk~~~ek~rIsl~~k~s~~~~~dd~~~~~~~~e~v~-----------~~~~~~--~d~-~s~~~~~~~d~g~q~~~~g 1372 (1710)
T KOG1070|consen 1307 CVLKEDSEKKRISLGLKSSYLSSEDDARITSYGEEGVE-----------MEEESH--SDP-KSMEEVAAEDPGFQSSSGG 1372 (1710)
T ss_pred EeeeccchhhhhhhhhhhhccCChhhhhcccccccCcc-----------hhcccc--cCc-cchhhhcccCCCccccccc
Confidence 99999999999999999999966443321110000000 000000 000 0000 000000000
Q ss_pred -----cccccccCCCCc-cc-CCCCCCCCcCCCCCCCCCCcchhchhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCC
Q 000236 1472 -----AQIESRASVPPL-EV-NLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAP 1544 (1810)
Q Consensus 1472 -----~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~~~~ 1544 (1810)
..++.....+++ +- .|++++.|++-+ +++.++++.+ ++++..+++.|.....+++.++. +.|
T Consensus 1373 ~~~e~~~d~~~~~~p~~le~s~~td~e~d~~~~--~~e~~qde~d--------ee~e~~kee~e~~~~~~e~~dl~-~~p 1441 (1710)
T KOG1070|consen 1373 FNLEDAVDEMSETLPDALEDSCETDSEVDEEVE--DEELDQDEKD--------EEKEKDKEEREENRSDEEERDLS-RAP 1441 (1710)
T ss_pred eehhhhhhhccccCCchhhhcccchhhhhhccc--cccccccccc--------hhhhhhhhhccccccchhhcccc-cCC
Confidence 001111111211 11 133322221111 1111111000 01111112222333333443433 699
Q ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 000236 1545 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1624 (1810)
Q Consensus 1545 ~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~v 1624 (1810)
++.++|+|+++.+||++.+|++||+|+++.+++++||++++|||.+|++||+.|++|+|++|+|+++.|| +.+...++
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--~eesl~kV 1519 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--TEESLKKV 1519 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--cHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 78999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCCh
Q 000236 1625 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH 1703 (1810)
Q Consensus 1625 ferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~ 1703 (1810)
|+||+++|++..+|..|+.+|...+++++|.++|+.|+++|++..++|..|++|++++ +.++|+.+++|||+.+|+++|
T Consensus 1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 000236 1704 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1783 (1810)
Q Consensus 1704 ~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~ 1783 (1810)
++++..||+++|++||.+|||++|+..+..+|++.|+|+.|+++++++|+.+.+|.+|||++.+++++++|+++|++|++
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000236 1784 YEKSVGEEERIEYVKQKAMEYVESTL 1809 (1810)
Q Consensus 1784 ~E~~~G~~~~a~~v~~rAl~~v~~~~ 1809 (1810)
||+++||.+.++.++.||.+||++..
T Consensus 1680 yEk~~Gde~~vE~VKarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVEYVKARAKEYVESIK 1705 (1710)
T ss_pred HHHhcCchhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999853
No 2
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=100.00 E-value=3.3e-102 Score=965.20 Aligned_cols=1459 Identities=21% Similarity=0.242 Sum_probs=1062.2
Q ss_pred CCCCcCcCcEEEEEEEEEecccEEEEcCCCcEEEEeccccCChhccccccccccCCCCCcccCCCEEEEEEEEeecc-cc
Q 000236 2 YPQNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDD-KK 80 (1810)
Q Consensus 2 ~~~~l~~G~~~lg~V~~i~~~~~~v~lp~~l~g~v~~~~is~~~~~~~~~~~~~~~l~~~f~~Gq~v~~~V~~~~~~-~~ 80 (1810)
|-..+.+||.+-+.|.++++++.+++.. +-+++-+-+. .+.+.+...|++|||++|.|+++... ..
T Consensus 150 S~~~~~~~~~l~~~v~S~ed~g~~l~~g-----~~~~~~~~e~--------~q~pn~~~~lKvGq~l~~~V~k~~s~~v~ 216 (1710)
T KOG1070|consen 150 SDEMLAAGEVLDTAVVSIEDHGAILDVG-----LDEITGFIEK--------SQFPNLGAKLKVGQWLRVSVTKSTSERVV 216 (1710)
T ss_pred CHhHhhhhhhhccccccccccccchhcC-----Cccccchhhh--------ccCchhhhhcccCceEEEEEEeccCceEE
Confidence 4456789999999999999999998883 2222211111 11235678899999999999987651 11
Q ss_pred ccCeeEEEEEechhhhccCCCcccccCCcEEEEEEEEEecceEEEEeCCCcceecccCCCCCCCCCCccCCCcEEEEEEE
Q 000236 81 EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 160 (1810)
Q Consensus 81 ~~~~~~~~LS~~p~~vn~~l~~~~l~~g~~l~~~V~sved~G~i~d~G~~~~~gfl~~~~~~~~~~~~~~~G~~~~~~v~ 160 (1810)
..++++.++|+.|...| +|..++|.|||+++|.|+||+|||+++|| +.+++|||++.|+.+.. .+..||.++|.|+
T Consensus 217 ks~~~~~~~t~~~t~~~-~~~~~~LvpGt~vqa~V~sv~~~Gi~~di-l~~ftG~l~~~hl~~~~--~~~~~~~~l~~vi 292 (1710)
T KOG1070|consen 217 KSTKFVEVLTLNPTSCN-GLALNDLVPGTMVQAEVQSVEDHGITLDI-LNGFTGFLDKKHLPPFL--RYFENQEKLGKVI 292 (1710)
T ss_pred ecccceeeecccchhcc-ccchhhcCCcceEEEEecceecCcEEEEe-cccccceeehhhCCchh--hccccHHHhhccc
Confidence 11367899999999998 89999999999999999999999999999 79999999999997554 5889999999976
Q ss_pred EEcCCCcEEEEccCccccccccccccccccccccCCCceEEEEEEEEecCeEEEEeCCCeEEEEeccccCCCCCCCCccc
Q 000236 161 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 240 (1810)
Q Consensus 161 ~~~~~~~~v~ls~~~~~~~~~~~~~~~~~~~~~l~pG~~v~~~V~~v~~~gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~ 240 (1810)
. .+.|++.+.... -++.... -...++.+.||..++-....+...|..+.+.+--.+..+..|+.... ..+++.
T Consensus 293 ~--~s~Rv~~~~f~~--ka~ki~~--l~~~v~ai~p~~~~~~~~~e~~k~G~~~K~~vi~~~~~~~~~~~tl~-~s~ie~ 365 (1710)
T KOG1070|consen 293 H--KSDRVFVVDFFD--KASKILV--LKAGVDAIAPSRIEKVLSFEIFKIGNKVKCRVIDVLQMDSLALFTLK-ESAIEG 365 (1710)
T ss_pred c--hhhheeeechhh--ccceEEE--ecCccceEccCCcccccchhhcccCceEEEEEEEEeeccceEEeecc-hhhccC
Confidence 5 445666554421 1111111 12356677888888877778888887777766556666666766443 246778
Q ss_pred cCCCCCEEEEEEEEEeC--C-CCeEEEeeCchhccCC--CCC----CCCCCCCeEEeeEEEEEeCCceeEEEeCCCCCcc
Q 000236 241 DYNQHKKVNARILFVDP--T-SRAVGLTLNPYLLHNR--APP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 311 (1810)
Q Consensus 241 ~~~~G~~v~arVl~~~~--~-~~~v~LSl~p~~~~~~--~~~----~~~~~G~iv~~~~V~~v~~~~G~~v~i~~~~~~v 311 (1810)
.|..+.-|++|++..-| . +-.++++-.||+.... .|. ....+|..+-+|.....+-..++++.... +.+
T Consensus 366 k~~~~s~V~~r~l~~~~~svdt~~~~l~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~v~~~sK~--pvi 443 (1710)
T KOG1070|consen 366 KFSLVSDVSPRGLLKKPVSVDTEEVGLSPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLKVLCVSKL--PVI 443 (1710)
T ss_pred ceEEEeccCCceEEEecccCChhhhhccccchhhceeecCCCcccccccceeeEEeeccceeeeeeeeeeEeecC--cce
Confidence 89999999999998766 2 2379999999998743 232 44566666666666555544455555543 336
Q ss_pred cEEEeecccchHHHHhh----cccccCCCEEEEEEEEEeecCCeEEEEeecccccccccccccCCCCCEEEEEEEEEecC
Q 000236 312 PAYVTISDVAEEEVRKL----EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 387 (1810)
Q Consensus 312 ~gfv~~s~~~~~~~~~~----~~~~~vG~~~~~rV~~~~~~~~~~~~s~k~~~~~~~~~~~~~l~~G~~v~g~V~~v~~~ 387 (1810)
.+|++...+++..+.+. ...|++|+++.|||.++.+.+..++|+..++++..++++.+||+.|++|.|+|.++++.
T Consensus 444 s~y~~~~~~t~~~l~~v~q~~v~~~e~~te~~~rv~~v~~v~~v~~v~~~~svl~lk~~~~nDI~iG~~V~~~I~~vt~~ 523 (1710)
T KOG1070|consen 444 SMYADAVKLTHGMLSKVPQGMVPIYEVGTEVKSRVWQVFYVGKVVIVSVRESVLGLKFLRVNDIEIGQLVPGVIRKVTPQ 523 (1710)
T ss_pred EEEeeccccCcchhhccccCCCCceecCCcccCccceecccCcEEEEEEehHhhcccccccccccccceeeeEEEEecCC
Confidence 89999887776665554 23599999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCC-eEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE--eCCeEEEEEcchhhcchhhHHhhhhhcCCCcEE
Q 000236 388 GAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 464 (1810)
Q Consensus 388 G~~V~~~~~-v~g~vp~~~ls~~~~~~~~~~~~vG~~v~~rVl~v--~~~~i~ls~k~~l~~~~~~~~~~~~~~~~g~~~ 464 (1810)
|+.|.+..+ +.|++|..|++|.+...|...|++|..+++|||.+ +.+++.||+|++|++..+|...+|++++||+++
T Consensus 524 Gv~v~v~~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~RVl~~~~~~~~v~l~~K~slv~~~~plp~d~~~~~pg~~~ 603 (1710)
T KOG1070|consen 524 GVEVLVTFGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKLRVLSVNRDRNRVALTLKKSLVNTQLPLPSDFEQAIPGKIT 603 (1710)
T ss_pred cEEEEEecCceeeecChHhhhhcccccccceeeeccccEEEEEEEEccCCeeEEEechhhhcccCCCccchhhcCCCceE
Confidence 999998755 99999999999999999999999999999999999 689999999999999999999999999999999
Q ss_pred EEEEEEEeeceEEEEEcCCeEEEeeccccCCCCCCCCCcCccCCCEEEEEEEEEeCCCCeEEEEEeeCCCCc----cccc
Q 000236 465 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV----SEDD 540 (1810)
Q Consensus 465 ~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~~~~----~~~~ 540 (1810)
+|++.++.++||||+|+||+.||+|.++|+..++.+++++|++||+|.+.|+++|++++|+.+|++.+.+.. ...+
T Consensus 604 ~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm~l~~r~s~~~~a~~~~~~e 683 (1710)
T KOG1070|consen 604 KGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRMPLGLRASSCARACVKRSVE 683 (1710)
T ss_pred EEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhcccccEEEEEEEecCchhceeehhhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999877632 2335
Q ss_pred cccCCCeEEEEEEEEecCcEEEEEEecCceeEEEecccccCcccc-cccccc---------cccCCCeEe-eEEEeecCC
Q 000236 541 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH-ATVMKS---------VIKPGYEFD-QLLVLDNES 609 (1810)
Q Consensus 541 ~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~-~~~~~~---------~~k~G~~i~-~vl~id~~~ 609 (1810)
.+..|.+..+.+...+.+.+.|++. ..++.|++-..||.|.... +..+.. .+.+|+.+. +++.+|..+
T Consensus 684 ~~~~g~v~s~~~~~~tkd~viVei~-~~~~~~v~~~~~L~dg~v~~~~~~~~kl~~~t~~~~lv~gq~~~~~i~~isl~k 762 (1710)
T KOG1070|consen 684 NFVKGGVKSLKSIDKTKDSVIVEIV-DQGITGVGVFGELVDGSVVVNKVLENKLRKNTSLLHLVVGQVTVGVILSISLKK 762 (1710)
T ss_pred HhhccccccceeehhccccEEEEcc-CcceEEEEEEEEEccCceEEccchhhhhhhcchhheeeecceeEEEEEEeehhh
Confidence 6778888888888888899999994 3579999999999983321 111111 145777777 677776666
Q ss_pred CeEEEeccchhcchhccCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEE
Q 000236 610 SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 689 (1810)
Q Consensus 610 ~~v~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~ 689 (1810)
.-+.++.++.|.+ ...++..|....++|.+|.+.|.|+.|.+++.++++.+.+-+....+... ...||.|.|
T Consensus 763 ~lv~~s~~~~L~~-------~~~~l~k~~~~~~~v~~is~~~~~~a~~~~~i~~v~~s~~v~s~~~d~~~-~~y~Q~v~~ 834 (1710)
T KOG1070|consen 763 SLVLISLCTDLPN-------NATKLLKGSYALALVRSISKEGKFVAFVSNLIALVKVSHLVDSELDDLTK-AEYGQSVTV 834 (1710)
T ss_pred hhhhccccccccc-------hHHHHhcCchhHHHHHhhhhheeheeecccccceeeccccccccccccce-eeeecccce
Confidence 6566666655543 34567788889999999999999999999999999999977655444433 344599999
Q ss_pred EEEEeeCCCCeEEEeecccccCCCChhhHHHHHHHHHHHHHhhcccCCCcccccccccccccEEEEEEEEeecceeEEEe
Q 000236 690 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 769 (1810)
Q Consensus 690 ~V~~vd~~~~rl~lSlk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~g~~v~l 769 (1810)
++.++++...+..++++......... +... ..--..+|-....+-..++.+|++|.++|++++++++.|.+
T Consensus 835 ~~~st~~~~~~~~~a~e~p~~K~~~~-----~~~~----~~~~~d~~Vd~a~k~~~~~~igsiv~a~v~svKp~~L~v~l 905 (1710)
T KOG1070|consen 835 KLLSTEPKVVKDLKAVEKPKKKKEKK-----FIKV----SSNDSDNEVDLAIKSTEDLSIGSIVRAYVKSVKPDQLNVLL 905 (1710)
T ss_pred EEEecChhHHHHHHhhcchhhcccee-----EEEe----ccccCCCccccccccccceeeeeEEEEEEeeecccceEEec
Confidence 99999987777777776553311000 0000 00000011111112247899999999999999999999999
Q ss_pred cccCceeEEEeeeeccCc---------cccCCCeEEEEEEEe-----------ecccceEEEeehhhhhhhhhhcchhhH
Q 000236 770 EEHSDVYGFITHHQLAGA---------TVESGSVIQAAILDV-----------AKAERLVDLSLKTVFIDRFREANSNRQ 829 (1810)
Q Consensus 770 ~~~~~v~g~i~~~~ls~~---------~~~~G~~v~~~vl~~-----------~~~~~~v~ls~k~~l~~~~~~~~~~~~ 829 (1810)
.. ++.|.||.+|+-+. .+++|+.|.++|+.. -..++..+||.||+.++. .+..+
T Consensus 906 ~~--~~~gri~isev~d~~~eitDp~~k~~vG~~I~vrviG~~D~k~lpith~i~k~~v~ElSvkps~les-~~~~t--- 979 (1710)
T KOG1070|consen 906 AA--NHHGRIHISEVLDNLHEITDPLDKFKVGDGIFVRVIGGHDVKDLPITHLISKEQVLELSVKPSELES-DEFNT--- 979 (1710)
T ss_pred cc--cccCceehHHhhccccccCChhhhcccCCeEEEEEEcCCccccCccccccchhhhhhhccChhhhcc-ccccc---
Confidence 86 58999999888652 699999999999877 124566899999999983 22222
Q ss_pred HhHhhhhhccccccCCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEeecCCCCcc
Q 000236 830 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 909 (1810)
Q Consensus 830 ~~~~~~~~~~~~~l~~g~~v~g~V~~i~~~~v~v~~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~~~~~~~~ 909 (1810)
.+..+++.|++|+|+|.++..+++++++. .-+.|.+|..+...+.
T Consensus 980 --------~s~~q~~~gq~vtGfV~nv~ke~~w~~is--p~v~~RIplld~s~~~------------------------- 1024 (1710)
T KOG1070|consen 980 --------TSTKQFKAGQEVTGFVNNVSKEWLWVRIS--PFVDGRIPLLDTSLDL------------------------- 1024 (1710)
T ss_pred --------cchhhhhcCCeEEEEEEccccceeEEEcc--ccccceeeeeeccchh-------------------------
Confidence 23356899999999999999999999983 3334444443321000
Q ss_pred cceeheehhccccccccccccccCCCCCCcceEEEEEEEEeCCeEEEEeCCCeeEEEEeeeecCCcCccccCcCcCCCCC
Q 000236 910 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 989 (1810)
Q Consensus 910 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~i~~~~~~v~l~~~~~G~v~~~e~~d~~~~~~~~p~~~~~~G 989 (1810)
|. .++|-+.|..|
T Consensus 1025 ---------------------------------------------------------~~----------le~~e~~F~~g 1037 (1710)
T KOG1070|consen 1025 ---------------------------------------------------------HV----------LELPESLFPLG 1037 (1710)
T ss_pred ---------------------------------------------------------hh----------hhCchhhcccc
Confidence 00 02333455666
Q ss_pred CEEEEEEEEeeecCCCCCcceEEEEeccCCccccccCCcccccccccCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEcc
Q 000236 990 QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1069 (1810)
Q Consensus 990 ~~v~~~Vl~~~~~~~~~~~~~~~lS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~ 1069 (1810)
+.++|+|...+. ..+++.--.. + .... ..+|++.-|.|..+..+++.++++...-|+.+..
T Consensus 1038 ~al~~~V~~~~~----------~~tv~~iG~~------~-~~k~--~s~G~~l~Grv~kv~~~~~~l~~~~~~~G~~~~i 1098 (1710)
T KOG1070|consen 1038 KALDEYVVRNDK----------SKTVRAIGFS------K-SDKN--PSPGDILFGRVSKVLPGYLILQLPFKVFGRVSFI 1098 (1710)
T ss_pred cceeeEEecccc----------eeEEEecccc------c-CCCC--CCcchhhcceeeeeccceeEEecCCccccceEEe
Confidence 666666655430 0000100000 0 0111 3589999999999999999999999999966654
Q ss_pred -ccCCCCchhhhhcccCCCCcEEEEEEEEEeCCCcEEEEEecccccCC-----CCcccccccccccccccCCCEEEEEEE
Q 000236 1070 -DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI-----SDKTVDISNDNMQTFIHEGDIVGGRIS 1143 (1810)
Q Consensus 1070 -~~~~~~~~~~~~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~~-----~~~~~~~~~~~~~~~l~~G~~v~g~V~ 1143 (1810)
+++++.. .+|...|..++.+.++++.++...+.+.||++...... .++.-...++ +++|+++.|.|.
T Consensus 1099 ~~~~d~~~--~~P~~~f~~~~~v~~~~L~vs~~n~~leLslr~sr~~~t~~~~kd~~iks~eD-----lk~g~iv~G~V~ 1171 (1710)
T KOG1070|consen 1099 EDMSDSYS--MTPVEHFTKIQIVYVCVLSVSALNKGLELSLRESRTKITPVDSKDGSIKSIED-----LKIGDIVRGFVK 1171 (1710)
T ss_pred eehhcccc--CChHHhcccccEEEEEEEEEecccccceeecccccccCccccccCCcccchhh-----cccCceeEEEEE
Confidence 6666543 35777899999999999999988888999998543311 1111122233 459999999999
Q ss_pred EEeeCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCCcceEEEeecccc
Q 000236 1144 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1223 (1810)
Q Consensus 1144 ~i~~~~~g~~V~l~~~~~G~i~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~g~~~l~lS~r~~~ 1223 (1810)
.+.+. |+|+.++.+..++++++++++.+... +...|++|+.+..+|+.++.. .++++||++++.
T Consensus 1172 nv~~~--glfi~ls~~v~a~v~is~~~ds~~k~-----------w~k~~~~gklv~~rv~~ve~~---s~riel~Lk~s~ 1235 (1710)
T KOG1070|consen 1172 NVETK--GLFIALSRKVEAFVPISGLSDSFEKE-----------WEKHLPVGKLVTGRVLSVEED---SKRIELSLKNSD 1235 (1710)
T ss_pred EecCC--cEEEEEccceEEEEEccccccchhhh-----------hhccCCccceeeeEEEEeecc---CceEEEEEeccc
Confidence 99999 99999999999999999999988776 667899999999999999986 679999999986
Q ss_pred cCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEeeceEEEEeCCCc--EEEEEcccCCCcccCCccccCCCC
Q 000236 1224 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL--DAKVLLSNLSDGYVESPEKEFPIG 1301 (1810)
Q Consensus 1224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v--~g~v~~s~ls~~~~~~~~~~f~~G 1301 (1810)
.+.. ........++++|+...|+|.++.++|+||.+.+++ .|++|++++.+....+....|..|
T Consensus 1236 ~~d~--------------~~~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~~~e~~d~~~e~it~~~~~~ 1301 (1710)
T KOG1070|consen 1236 IKDT--------------VKLLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCHISEEADDRGENITALYYAG 1301 (1710)
T ss_pred cCCc--------------hhhhhhhhhhhccccccceEEEecCCceEEEecCcceecccccceeecchhhhhcccceecc
Confidence 1111 112333467899999999999999999999999876 999999999999999988889999
Q ss_pred cEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCccc
Q 000236 1302 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1381 (1810)
Q Consensus 1302 ~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~ 1381 (1810)
+.|.+.+++.+.+.+||.+++|.+......+. +++....-|+=.+.+.
T Consensus 1302 ~~V~a~~lk~~~ek~rIsl~~k~s~~~~~dd~----------------~~~~~~~e~v~~~~~~---------------- 1349 (1710)
T KOG1070|consen 1302 DRVKACVLKEDSEKKRISLGLKSSYLSSEDDA----------------RITSYGEEGVEMEEES---------------- 1349 (1710)
T ss_pred ceeeeEeeeccchhhhhhhhhhhhccCChhhh----------------hcccccccCcchhccc----------------
Confidence 99999999999999999999998765321111 0100000000000000
Q ss_pred ccCcccccCCCCEEEEEEEEEecCCCeeEEeecccccCCCccccccCcccchhhhHhhhcccCcccccccCccccccccc
Q 000236 1382 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM 1461 (1810)
Q Consensus 1382 ~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1461 (1810)
..++ +.-+.+-+ +...+. ... .+.....+....++ ..++.
T Consensus 1350 ~~d~----~s~~~~~~----------------~d~g~q-----------~~~------~g~~~e~~~d~~~~---~~p~~ 1389 (1710)
T KOG1070|consen 1350 HSDP----KSMEEVAA----------------EDPGFQ-----------SSS------GGFNLEDAVDEMSE---TLPDA 1389 (1710)
T ss_pred ccCc----cchhhhcc----------------cCCCcc-----------ccc------cceehhhhhhhccc---cCCch
Confidence 0000 00000000 000000 000 00000000000000 00000
Q ss_pred -cccCCCcccccccccccCCCCcccCCCCCCCCcCCCC-------CCCCCCcchhchhhhhhhhhhhhHHHHHHHHH---
Q 000236 1462 -ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGI-------SQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE--- 1530 (1810)
Q Consensus 1462 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--- 1530 (1810)
|++++.+.+. +++ . .+.+.++|+.+ ++.+++-. ++......+ .++..++.+..
T Consensus 1390 le~s~~td~e~--d~~----~------~~~e~~qde~dee~e~~kee~e~~~~--~~e~~dl~~--~pesaeDferlvrs 1453 (1710)
T KOG1070|consen 1390 LEDSCETDSEV--DEE----V------EDEELDQDEKDEEKEKDKEEREENRS--DEEERDLSR--APESAEDFERLVRS 1453 (1710)
T ss_pred hhhcccchhhh--hhc----c------ccccccccccchhhhhhhhhcccccc--chhhccccc--CCcCHHHHHHHHhc
Confidence 0000000000 000 0 00000000000 00000000 000000000 00000111111
Q ss_pred -------H-HHHHHHHhccCCCCcHHHHHHHHH-cCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchh
Q 000236 1531 -------I-RAAEERLLEKDAPRTPDEFERLVR-SSP----NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1597 (1810)
Q Consensus 1531 -------~-~~~e~~~~~~~~~~a~~~fer~l~-~~P----~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~ 1597 (1810)
| +-+.-.+.-.+.+.|++.+||+|. .|+ .--.+|+.|..++..-|.-+...++|+||-+-+.+
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~---- 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA---- 1529 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch----
Confidence 3 223333444668999999999995 455 35789999999999999999999999999976664
Q ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC--CHHHHHH
Q 000236 1598 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLR 1674 (1810)
Q Consensus 1598 e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~--~~~~w~~ 1674 (1810)
+.++.+++.+|.....+ +.|.++|+++++..-. ..+|..|+.++.+.++-++|+.++.+|++-.|. ..++...
T Consensus 1530 --~~V~~~L~~iy~k~ek~--~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1530 --YTVHLKLLGIYEKSEKN--DEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred --HHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 56899999999999855 9999999999998874 499999999999999999999999999998875 7888889
Q ss_pred HHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHH
Q 000236 1675 RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTD-LWSIYLDQEIR 1750 (1810)
Q Consensus 1675 ~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~--~P~~~~-lw~~ya~~e~k 1750 (1810)
.|++.++. +.+++|.+|+-.|..+|++. .+|.-|+.++.++|+.+.+|.+|||++.. .|++.. ++..|.++|.+
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRt--DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRT--DLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccch--hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 99999999 99999999999999999985 89999999999999999999999999865 455544 67888899999
Q ss_pred cCChHHHHHHHHHHHh
Q 000236 1751 LGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1751 ~gd~e~ar~lferal~ 1766 (1810)
.||-+.+..+=.||..
T Consensus 1684 ~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1684 HGDEKNVEYVKARAKE 1699 (1710)
T ss_pred cCchhhHHHHHHHHHH
Confidence 9998877777666664
No 3
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-64 Score=604.00 Aligned_cols=491 Identities=23% Similarity=0.279 Sum_probs=440.7
Q ss_pred ccccccCCCceEEEEEEEEecCeEEEEeCCCeEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCCeEEEeeCc
Q 000236 189 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 268 (1810)
Q Consensus 189 ~~~~~l~pG~~v~~~V~~v~~~gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~p 268 (1810)
.+...+.||+.|.|+|.+|.++++.|++++...|++|...++.... ...|++|+.+.++|+.+.+....+.||.+.
T Consensus 14 ~~~~~~~~G~vV~G~Vv~i~~~~v~Vdig~Kseg~ip~~E~~~~~~----~~~~~~gd~v~v~v~~~e~~~g~~~lS~~k 89 (541)
T COG0539 14 KSDEEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPV----EDVVQVGDEVEVLVLRVEDGEGELVLSRRK 89 (541)
T ss_pred cchhccCCCCEEEEEEEEEeCCeEEEEecCccccEeEHHHhccccc----cceecCCCEEEEEEEEEecCCceEEeeHHH
Confidence 4677899999999999999999999999999999999999987643 237999999999999999988999999987
Q ss_pred hhcc--CCCCCCCCCCCCeEEeeEEEEEeCCceeEEEeCCCCCcccEEEeecccchHHHHhhcccccCCCEEEEEEEEEe
Q 000236 269 YLLH--NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 346 (1810)
Q Consensus 269 ~~~~--~~~~~~~~~~G~iv~~~~V~~v~~~~G~~v~i~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~ 346 (1810)
.-.. |......+..|.+|+ ++|....+| |+.+++.+ ++||+|.|+++..++++.. -.+|.++.++|+.++
T Consensus 90 ~~~~~~w~~l~~~~e~~~~V~-~~v~~~vKG-G~~Vdi~g----vr~FlP~S~v~~r~v~d~~--~~~Gk~~~~kiie~d 161 (541)
T COG0539 90 AERERAWEKLEEAFENGEIVE-GKITGKVKG-GLTVDIEG----VRAFLPGSLVDVRPVRDLD--PLIGKELEFKILELD 161 (541)
T ss_pred HHHHHhHHHHHHHHhcCCeEE-EEEEEEecC-cEEEEECC----EEEeccHHHhccccccccc--ccCCceEEEEEEEEc
Confidence 7654 444457889999998 667777788 99999962 7999999999988777764 479999999999999
Q ss_pred ecCCeEEEEeecccc----cccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCC
Q 000236 347 HLEGLATGILKASAF----EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 422 (1810)
Q Consensus 347 ~~~~~~~~s~k~~~~----~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~~~~~v~g~vp~~~ls~~~~~~~~~~~~vG~ 422 (1810)
..++.+++|.+.... +++...++.+++|++|+|+|++++++|+||+|+ |++|+||.+||||.++.+|++.|++||
T Consensus 162 ~~~n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdig-GvdGLlHiseiS~~rv~~P~~vvkvGd 240 (541)
T COG0539 162 KKRNNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEVVKVGD 240 (541)
T ss_pred cccCcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEec-CeeeEEehhhccccccCCHHHhcccCC
Confidence 999999999775544 456788999999999999999999999999998 599999999999999999999999999
Q ss_pred EEEEEEEEE--eCCeEEEEEcchhhcchhhHHhhh-hhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeeccccCCCCCC
Q 000236 423 ELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 499 (1810)
Q Consensus 423 ~v~~rVl~v--~~~~i~ls~k~~l~~~~~~~~~~~-~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~ 499 (1810)
+|+|+||++ +++|+.||+|+++.+ ||... ....+|+.+.|+|+++.+|||||++++|+.||+|.|+|+|....
T Consensus 241 ~VkvkVi~~D~e~~RVsLSlK~l~~d----Pw~~i~~~~~~g~~v~G~Vt~i~~~GafVei~~GvEGlvhvSEisw~~~~ 316 (541)
T COG0539 241 EVKVKVISLDEERGRVSLSLKQLEED----PWEGIEKKYPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKN 316 (541)
T ss_pred EEEEEEEEEccCCCeEEEEehhcccC----cHHHHhhhcCCCCEEEEEEEEeecCcEEEEecCCccceeechhhcccccC
Confidence 999999999 689999999999887 34443 34578999999999999999999999999999999999999887
Q ss_pred CCCcCccCCCEEEEEEEEEeCCCCeEEEEEeeCCC-Ccc-ccccccCCCeEEEEEEEEecCcEEEEEEecCceeEEEecc
Q 000236 500 EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT-RVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 577 (1810)
Q Consensus 500 ~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~~-~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~ 577 (1810)
.|++++++||+|.|+|+++|++++||+||||+... ||. ....+++|+.++|.|++++++|+||.+ +++++|++|.+
T Consensus 317 ~P~evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~~~~g~~v~g~v~~~t~~g~fv~l--e~gidG~vh~~ 394 (541)
T COG0539 317 VPSEVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADKHPVGDVVEGKVKSITDFGAFVEL--EGGIDGLVHLS 394 (541)
T ss_pred CHHHhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhhhcCCCCeEEEEEeeecccceEEcc--CCCccceEEHH
Confidence 79999999999999999999999999999998754 654 445699999999999999999999999 78899999999
Q ss_pred cccCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCCccccCCCCCEEEEEEEEEecCeEEEEE
Q 000236 578 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 656 (1810)
Q Consensus 578 ~lsd~~~~~~~~~~~~k~G~~i~-~vl~id~~~~~v~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f 656 (1810)
+|+|.....+.. .|+.|++++ .+|.+|.+++++.|+.|+...+||.... ..++.|..++|+|+++.++|+||+|
T Consensus 395 d~sw~~~~~~~~--~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~~p~~~~~---~~~~~~~~v~~~v~~i~~~G~~v~l 469 (541)
T COG0539 395 DLSWDRPGEEAE--KYKKGDEVEAKVLAVDKEKERISLGIKQLEESPWEEFS---EKYKKGSVVKGKVKSVKDKGAFVEL 469 (541)
T ss_pred hcCccccCcHHH--hhccCcEEEEEEEEEecccceeeeehhhhccCchhhhH---hhccCCCeEEEEEEEEccCceEEEe
Confidence 999976555443 899999999 8999999999999999999999887543 3488999999999999999999999
Q ss_pred CCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 657 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 657 ~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
.+++.||+|.++++.. .|++||+|.|+|+++|+.++++.||+|+...
T Consensus 470 ~~~v~G~i~~~~~~~~-------~~~~gd~v~a~v~~id~k~~ki~lSik~~~~ 516 (541)
T COG0539 470 GGGVEGLIRLSELSRD-------VLKVGDEVEAVVVSIDKKNRKILLSIKALER 516 (541)
T ss_pred cCceeeeeecchhhhh-------hccCCCEEEEEEEEEcCCCCEEEEEechhhh
Confidence 9999999999999875 6999999999999999999999999997654
No 4
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-60 Score=572.56 Aligned_cols=496 Identities=23% Similarity=0.325 Sum_probs=440.6
Q ss_pred CCCCCCCCeEEeeEEEEEeCCceeEEEeCCCCCcccEEEeecccchHHHHhhcccccCCCEEEEEEEEEeecCCeEEEEe
Q 000236 277 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 356 (1810)
Q Consensus 277 ~~~~~~G~iv~~~~V~~v~~~~G~~v~i~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~~~~~~~s~ 356 (1810)
...+.+|+++. ++|+.++.+ +++|+++.+ ..|++|+++++..+... .|++|+.+.+.|+.....++.+++|.
T Consensus 16 ~~~~~~G~vV~-G~Vv~i~~~-~v~Vdig~K---seg~ip~~E~~~~~~~~---~~~~gd~v~v~v~~~e~~~g~~~lS~ 87 (541)
T COG0539 16 DEEFEPGDVVK-GTVVSIEKD-GVLVDIGGK---SEGVIPISEFSNEPVED---VVQVGDEVEVLVLRVEDGEGELVLSR 87 (541)
T ss_pred hhccCCCCEEE-EEEEEEeCC-eEEEEecCc---cccEeEHHHhccccccc---eecCCCEEEEEEEEEecCCceEEeeH
Confidence 46789999998 688899998 899999974 38999999998665433 48999999999999988888899997
Q ss_pred eccccc-ccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE--eC
Q 000236 357 KASAFE-GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 433 (1810)
Q Consensus 357 k~~~~~-~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~~~~~v~g~vp~~~ls~~~~~~~~~~~~vG~~v~~rVl~v--~~ 433 (1810)
++.... .+......+..|.+|+|+|+...+.|++|++. |+.||+|.+|++..++.++ .-.+|.+++++|+.+ .+
T Consensus 88 ~k~~~~~~w~~l~~~~e~~~~V~~~v~~~vKGG~~Vdi~-gvr~FlP~S~v~~r~v~d~--~~~~Gk~~~~kiie~d~~~ 164 (541)
T COG0539 88 RKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDIE-GVRAFLPGSLVDVRPVRDL--DPLIGKELEFKILELDKKR 164 (541)
T ss_pred HHHHHHHhHHHHHHHHhcCCeEEEEEEEEecCcEEEEEC-CEEEeccHHHhcccccccc--cccCCceEEEEEEEEcccc
Confidence 765544 34555667889999999999999999999998 5999999999987655443 245999999999999 67
Q ss_pred CeEEEEEcchhhcchhhHH-hhhhhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeeccccCCCCCCCCCcCccCCCEEE
Q 000236 434 KRITVTHKKTLVKSKLAIL-SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 512 (1810)
Q Consensus 434 ~~i~ls~k~~l~~~~~~~~-~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~ 512 (1810)
+++.+|+|..+..+..... .-++++++|+++.|+|+++++||+||++ +|+.||+|+++|+|.++.+|++.|++||+|+
T Consensus 165 n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdi-gGvdGLlHiseiS~~rv~~P~~vvkvGd~Vk 243 (541)
T COG0539 165 NNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDI-GGVDGLLHISEISWKRVDHPSEVVKVGDEVK 243 (541)
T ss_pred CcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEe-cCeeeEEehhhccccccCCHHHhcccCCEEE
Confidence 8999999988876554332 3367789999999999999999999999 5699999999999999999999999999999
Q ss_pred EEEEEEeCCCCeEEEEEeeCC-CCcc-ccccccCCCeEEEEEEEEecCcEEEEEEecCceeEEEecccccCccccccccc
Q 000236 513 CRIMSSIPASRRINLSFMMKP-TRVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 590 (1810)
Q Consensus 513 ~rVl~~d~~~~~l~lS~k~~~-~~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~ 590 (1810)
|+|+++|++++|++||+|+.. .||. ....+++|+.+.|+|++++++|+||++ .++++||+|.+++||..... ..
T Consensus 244 vkVi~~D~e~~RVsLSlK~l~~dPw~~i~~~~~~g~~v~G~Vt~i~~~GafVei--~~GvEGlvhvSEisw~~~~~--P~ 319 (541)
T COG0539 244 VKVISLDEERGRVSLSLKQLEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEI--EEGVEGLVHVSEISWTKKNV--PS 319 (541)
T ss_pred EEEEEEccCCCeEEEEehhcccCcHHHHhhhcCCCCEEEEEEEEeecCcEEEEe--cCCccceeechhhcccccCC--HH
Confidence 999999999999999999874 4775 457899999999999999999999999 89999999999999965433 46
Q ss_pred ccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCcc
Q 000236 591 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 669 (1810)
Q Consensus 591 ~~~k~G~~i~-~vl~id~~~~~v~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~l 669 (1810)
+.+++||+++ ++|.+|++++|++||+|+...+||..... .+++|.++.|.|.++|++|+||.+++|++||+|.+++
T Consensus 320 evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~---~~~~g~~v~g~v~~~t~~g~fv~le~gidG~vh~~d~ 396 (541)
T COG0539 320 EVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFAD---KHPVGDVVEGKVKSITDFGAFVELEGGIDGLVHLSDL 396 (541)
T ss_pred HhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhh---hcCCCCeEEEEEeeecccceEEccCCCccceEEHHhc
Confidence 7899999999 99999999999999999999999986543 3889999999999999999999999999999999999
Q ss_pred CcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeecccccCCCChhhHHHHHHHHHHHHHhhcccCCCccccccccccc
Q 000236 670 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 749 (1810)
Q Consensus 670 s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (1810)
+|.....+...|+.|++++|+|+.+|++++|++|++|++.. +|| ..+...++.
T Consensus 397 sw~~~~~~~~~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~------------------------~p~---~~~~~~~~~ 449 (541)
T COG0539 397 SWDRPGEEAEKYKKGDEVEAKVLAVDKEKERISLGIKQLEE------------------------SPW---EEFSEKYKK 449 (541)
T ss_pred CccccCcHHHhhccCcEEEEEEEEEecccceeeeehhhhcc------------------------Cch---hhhHhhccC
Confidence 99887777779999999999999999999999999998764 344 345677999
Q ss_pred ccEEEEEEEEeecceeEEEecccCceeEEEeeeeccCccccCCCeEEEEEEEeecccceEEEeehhhhhhh
Q 000236 750 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 820 (1810)
Q Consensus 750 G~~v~~~V~~~~~~g~~v~l~~~~~v~g~i~~~~ls~~~~~~G~~v~~~vl~~~~~~~~v~ls~k~~l~~~ 820 (1810)
|++|+|+|+++.++|++|.+.+ ++.|+++.++++...+++||+++|+|+.+|..++.+.||+|+...+.
T Consensus 450 ~~~v~~~v~~i~~~G~~v~l~~--~v~G~i~~~~~~~~~~~~gd~v~a~v~~id~k~~ki~lSik~~~~~e 518 (541)
T COG0539 450 GSVVKGKVKSVKDKGAFVELGG--GVEGLIRLSELSRDVLKVGDEVEAVVVSIDKKNRKILLSIKALERKE 518 (541)
T ss_pred CCeEEEEEEEEccCceEEEecC--ceeeeeecchhhhhhccCCCEEEEEEEEEcCCCCEEEEEechhhhhh
Confidence 9999999999999999999986 57999999999999999999999999999999999999999987754
No 5
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=100.00 E-value=2.8e-57 Score=586.52 Aligned_cols=494 Identities=20% Similarity=0.245 Sum_probs=421.5
Q ss_pred cccccccCCCceEEEEEEEEecCeEEEEeCCCeEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCCeEEEeeC
Q 000236 188 GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 267 (1810)
Q Consensus 188 ~~~~~~l~pG~~v~~~V~~v~~~gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~ 267 (1810)
..++..+.+|.+|.|+|.+|.+++++|+++++.+|+|+..++.. .+++|++|.|+|+.+++. + +.||..
T Consensus 313 ~~~~~~~~~G~iV~G~Vv~i~~~~v~VdiG~K~eGiI~~~E~~~---------~~kvGd~i~~~V~~~~~~-~-~~LS~~ 381 (863)
T PRK12269 313 RYSFEAPEPGSVRMGTVVQVNAGTVFVDIGGKSEGRVPVEEFEA---------PPKAGDGVRVYVERVTPY-G-PELSKT 381 (863)
T ss_pred hhccccCCCCCEEEEEEEEEECCEEEEEeCCCceEEeEHHHhcc---------CCCCCCEEEEEEEEEcCC-c-eEEEeh
Confidence 34578899999999999999999999999999999999988732 479999999999999874 3 789987
Q ss_pred chhcc--CCCCCCCCCCCCeEEeeEEEEEe--CCceeEEEeCCCCCcccEEEeecccchHHHHhhcccccCCCEEEEEEE
Q 000236 268 PYLLH--NRAPPSHVKVGDIYDQSKVVRVD--RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL 343 (1810)
Q Consensus 268 p~~~~--~~~~~~~~~~G~iv~~~~V~~v~--~~~G~~v~i~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~ 343 (1810)
..... |.....++..|++|+ ++|.+++ .+ |++|+++.+ ++||+|.|+++....++++ ..+|+++.+.|+
T Consensus 382 ~~~~~~~~~~l~~a~~~g~~V~-G~Vv~v~~~kg-G~~Vdig~~---~~gfiP~se~~~~~~~~~~--~~vG~~ie~~V~ 454 (863)
T PRK12269 382 KADRLGLKVKLRDAERDGTPVE-GRIVRLTEKKS-GFEVDLGAG---MMAFLPISQSDCQKVDAPE--SLIGLTSKFYIE 454 (863)
T ss_pred HhhhhHHHHHHHHHHhCCCeEE-EEEEEEEeecC-EEEEEECCC---cEEEEEHHHhccccccchH--HhCCCeEEEEEE
Confidence 55322 333457889999998 6777764 35 999999642 5999999998755444443 469999999999
Q ss_pred EEee-----cCCeEEEEeeccccc----ccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCC
Q 000236 344 GFRH-----LEGLATGILKASAFE----GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 414 (1810)
Q Consensus 344 ~~~~-----~~~~~~~s~k~~~~~----~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~~~~~v~g~vp~~~ls~~~~~~~ 414 (1810)
.++. .++.+++|.+....+ .....++++++|++|+|+|++++++|+||+++ |++||||.+|++|.+..+|
T Consensus 455 ~~~~~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~l~~G~~V~G~Vk~i~~~G~fVdl~-Gv~Gfvp~SeiS~~~v~~~ 533 (863)
T PRK12269 455 RISQSKQHRGNDNIVINRRRYLEERARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVARP 533 (863)
T ss_pred EEecccccCCCCeEEEEHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEEEEeCCcEEEEEC-CEEEEEEchhccccccCCH
Confidence 9865 335788997654322 12334678999999999999999999999995 8999999999999888899
Q ss_pred CCCcccCCEEEEEEEEE--eCCeEEEEEcchhhcchhhHHhhh-hhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeecc
Q 000236 415 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 491 (1810)
Q Consensus 415 ~~~~~vG~~v~~rVl~v--~~~~i~ls~k~~l~~~~~~~~~~~-~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s 491 (1810)
.+.|++||+|+|+||.+ +++++.||+|..+.+ +|..+ +.+++|+++.|+|+++.+||+||++++|+.||+|.|
T Consensus 534 ~~~~kvGq~v~vkVi~iD~e~~rI~LSlK~l~~~----p~~~~~~~~~vG~iV~G~V~~I~~fG~fVeL~~gveGLvhiS 609 (863)
T PRK12269 534 REFVKKGQTIELKVIRLDQAEKRINLSLKHFQPD----PWLEFENKFGVNDVVKGRVTKIADFGAFIELAEGIEGLAHIS 609 (863)
T ss_pred HHhccCCCEEEEEEEEEecCCCeEEEEEeccccc----hhhhhhccCCCCCEEEEEEEEEeCCeEEEEecCCceeeeEHH
Confidence 99999999999999999 478999999987654 34443 346899999999999999999999999999999999
Q ss_pred ccCC-CCCCCCCcCccCCCEEEEEEEEEeCCCCeEEEEEeeCC-CCccc-cccccCCCeEEEEEEEEecCcEEEEEEecC
Q 000236 492 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 568 (1810)
Q Consensus 492 ~~~~-~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~-~~~~~-~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~ 568 (1810)
+++| ....+|.+.|++||+|+|+|+++|++++|+.||+++.. +||.. .+.+++|++++|+|++++++|+||++ .+
T Consensus 610 Els~~~~~~~p~~~~kvGd~V~vkVl~iD~e~~rIsLS~K~l~~~Pw~~~~~~~~vG~~v~G~V~~i~~~G~fV~l--~~ 687 (863)
T PRK12269 610 EFSWVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIVKVTNAGAFIEM--EE 687 (863)
T ss_pred HhcCccccCCHHHcCCCCCEEEEEEEEEecccCceEEEehhcccCchHHHHHhCCCCCEEEEEEEEEecceEEEEe--CC
Confidence 9999 56778999999999999999999999999999999754 46654 46789999999999999999999999 78
Q ss_pred ceeEEEecccccCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCCccccCCCCCEEEEEEEEE
Q 000236 569 YSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 647 (1810)
Q Consensus 569 ~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~i~-~vl~id~~~~~v~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i 647 (1810)
+++|+||.++|||..... .....|++||.|+ +++.+|++++++.||+|+...+||... .+.+++|+.+.|+|+++
T Consensus 688 gV~GlIh~sels~~~~~~-~~~~~~kvGq~VkvkVl~ID~e~rrI~LS~K~l~~dpw~~~---~~~~~vG~iV~GkV~~v 763 (863)
T PRK12269 688 GIDGFLHVDDLSWVKRTR-PADHELEVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVF---ANAYGVGSTVEGEVSSV 763 (863)
T ss_pred CcEEEEEhHHhhcccccc-chhhccCCCCEEEEEEEEEeccCCEEEEEecccccChHHHH---HhhCCCCCEEEEEEEEE
Confidence 999999999999854221 1245799999999 899999999999999999998888753 24478999999999999
Q ss_pred ecCeEEEEECCCeEEEeeCCccCcccccCcc---cCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 648 IETGCFVRFLGRLTGFAPRSKAVDGQRADLS---KTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 648 ~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~---~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
+++|+||++.+|+.||+|.++++|++..++. ..|++||.|+|+|+++|+++++|.||+|++..
T Consensus 764 ~~~GvFVeL~~gVeGlI~~s~lsdd~~~~~~~~~~~f~vGD~V~v~Vl~iD~~~rkI~LSlk~~~~ 829 (863)
T PRK12269 764 TDFGIFVRVPGGVEGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVRDYQR 829 (863)
T ss_pred ecCeEEEEcCCCeEEEEEHHHcCCcccccchhhccccCCCCEEEEEEEEEEcCCCEEEEEEechhh
Confidence 9999999999999999999999998765543 45999999999999999999999999997654
No 6
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=8.2e-56 Score=573.17 Aligned_cols=496 Identities=20% Similarity=0.251 Sum_probs=433.0
Q ss_pred cccCCCceEEEEEEEEecCeEEEEeCCCeEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCCeEEEeeCchhc
Q 000236 192 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 271 (1810)
Q Consensus 192 ~~l~pG~~v~~~V~~v~~~gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~p~~~ 271 (1810)
..+.+|+.|.|+|.++.++|++|++++...|++|..|++.... ...|++|++++|+|+.+++..+++.||+++...
T Consensus 26 ~~~~~G~~v~G~V~~v~~~~~~Vdig~k~~g~lp~~e~~~~~~----~~~~~vG~~i~~~V~~~~~~~~~i~lS~k~~~~ 101 (565)
T PRK06299 26 SETREGSIVKGTVVAIDKDYVLVDVGLKSEGRIPLEEFKNEQG----ELEVKVGDEVEVYVERIEDGFGETVLSREKAKR 101 (565)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEeCCCeEEEEEHHHhcCccc----cccCCCCCEEEEEEEEEECCCCcEEEechHHHH
Confidence 4578999999999999999999999888999999999985322 236999999999999999988999999987754
Q ss_pred c--CCCCCCCCCCCCeEEeeEEEEEeCCceeEEEeCCCCCcccEEEeecccchHHHHhhcccccCCCEEEEEEEEEeecC
Q 000236 272 H--NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 349 (1810)
Q Consensus 272 ~--~~~~~~~~~~G~iv~~~~V~~v~~~~G~~v~i~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~~ 349 (1810)
. |......+..|++|+ ++|..+..+ |++|+++ +++||+|.+++++....+++ +.+|+++.|+|+.++...
T Consensus 102 ~~~~~~l~~~~~~g~~v~-g~V~~~~~~-G~~V~~~----g~~gfip~s~~~~~~~~~~~--~~vG~~i~~~V~~~d~~~ 173 (565)
T PRK06299 102 LEAWDKLEKAFENGEIVE-GVINGKVKG-GFTVDLN----GVEAFLPGSQVDVRPVRDTD--PLEGKELEFKVIKLDKKR 173 (565)
T ss_pred HHHHHHHHHHhhCCCEEE-EEEEEEECC-EEEEEEC----CEEEEEEHHHccCcCCCChH--HhCCCEEEEEEEEEECCC
Confidence 3 333346788999998 678888887 9999997 26999999999876555543 679999999999999999
Q ss_pred CeEEEEeecccccc----cccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEE
Q 000236 350 GLATGILKASAFEG----LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 425 (1810)
Q Consensus 350 ~~~~~s~k~~~~~~----~~~~~~~l~~G~~v~g~V~~v~~~G~~V~~~~~v~g~vp~~~ls~~~~~~~~~~~~vG~~v~ 425 (1810)
+.+.+|+++..... +...+.++++|++++|+|+++.++|++|+++ +++|++|.++++|.+..+|.+.|++||+|+
T Consensus 174 ~~i~lS~k~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~~~~~~~~~kvG~~v~ 252 (565)
T PRK06299 174 NNIVVSRRAVLEEERAEEREELLENLEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKRVNHPSEVVNVGDEVK 252 (565)
T ss_pred CEEEEEhHHhhhhhhhhHHHHHHhcCCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccccCCHhhcCCCCCEEE
Confidence 99999988765322 2345778999999999999999999999998 899999999999988899999999999999
Q ss_pred EEEEEE--eCCeEEEEEcchhhcchhhHHhhh-hhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeeccccCCC-CCCCC
Q 000236 426 FRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEP 501 (1810)
Q Consensus 426 ~rVl~v--~~~~i~ls~k~~l~~~~~~~~~~~-~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~-~~~~~ 501 (1810)
|+|+++ +++++.||+|....+ +|..+ ..+++|+++.|+|+++.++|+||++.+++.||+|.++++|. ...+|
T Consensus 253 v~V~~~d~~~~~i~lS~k~~~~~----p~~~~~~~~~~G~~v~g~V~~i~~~G~fV~l~~~v~Glv~~sel~~~~~~~~~ 328 (565)
T PRK06299 253 VKVLKFDKEKKRVSLGLKQLGED----PWEAIEKKYPVGSKVKGKVTNITDYGAFVELEEGIEGLVHVSEMSWTKKNKHP 328 (565)
T ss_pred EEEEEEeCCCCeEEEEEEecccC----hhHHHHhhCCCCCEEEEEEEEEeCCeEEEEeCCCCEEEEEHHHcCccccccCH
Confidence 999999 468999999987655 34433 35688999999999999999999999999999999999975 34567
Q ss_pred CcCccCCCEEEEEEEEEeCCCCeEEEEEeeCC-CCcc-ccccccCCCeEEEEEEEEecCcEEEEEEecCceeEEEecccc
Q 000236 502 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 579 (1810)
Q Consensus 502 ~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~-~~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~l 579 (1810)
.+.|++|+.|+|+|+++|++++++.||+++.. .++. ....+++|++|.|+|++++++|++|.+ .++++|++|.++|
T Consensus 329 ~~~~~~G~~v~v~V~~id~~~~~i~ls~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l--~~~v~g~i~~s~l 406 (565)
T PRK06299 329 SKVVSVGQEVEVMVLEIDEEKRRISLGLKQCKENPWEEFAEKYPVGDVVEGKVKNITDFGAFVGL--EGGIDGLVHLSDI 406 (565)
T ss_pred HHhcCCCCEEEEEEEEEcCCCCEEEEehHHhccchhhhHHHhCCCCCEEEEEEEEEecceEEEEC--CCCCEEEEEHHHc
Confidence 77899999999999999999999999998653 3443 335678999999999999999999999 7789999999999
Q ss_pred cCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCCccccCCCCCEEEEEEEEEecCeEEEEECC
Q 000236 580 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 658 (1810)
Q Consensus 580 sd~~~~~~~~~~~~k~G~~i~-~vl~id~~~~~v~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~ 658 (1810)
+|... .......|++||.|+ +++.+|.+++++.||+|++..++|... .+++++|+++.|+|+++.++|+||++.+
T Consensus 407 ~~~~~-~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ls~k~~~~~p~~~~---~~~~~~G~vV~G~V~~v~~~G~fV~l~~ 482 (565)
T PRK06299 407 SWDKK-GEEAVELYKKGDEVEAVVLKVDVEKERISLGIKQLEEDPFEEF---AKKHKKGSIVTGTVTEVKDKGAFVELED 482 (565)
T ss_pred Ccccc-ccChHhhCCCCCEEEEEEEEEeCCCCEEEEEEehhhcCchhHH---HhhcCCCCEEEEEEEEEecCceEEecCC
Confidence 97431 123457899999999 799999999999999999998888643 3568899999999999999999999999
Q ss_pred CeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 659 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 659 gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
|+.||+|.|++++.++.++.+.|++||.|+|+|+++|++++|+.||+|++..
T Consensus 483 gi~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V~~vd~~~~~i~LS~k~~~~ 534 (565)
T PRK06299 483 GVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRISLSIKALDE 534 (565)
T ss_pred CcEEEEEHHHhcchhccCccccCCCCCEEEEEEEEEccccCEEEEEeeehhh
Confidence 9999999999999999999999999999999999999999999999998754
No 7
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=100.00 E-value=1.1e-55 Score=571.94 Aligned_cols=507 Identities=19% Similarity=0.258 Sum_probs=415.6
Q ss_pred cccccCCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEeecCCCCcccceeheehh
Q 000236 839 ASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 918 (1810)
Q Consensus 839 ~~~~l~~g~~v~g~V~~i~~~~v~v~~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~~~~~~~~~~~~l~~~~ 918 (1810)
++..++.|+.|+|+|..++++++||++ +++..|++|..+|. ..+++|++|.|.|..++. . + ..|+...
T Consensus 315 ~~~~~~~G~iV~G~Vv~i~~~~v~Vdi--G~K~eGiI~~~E~~------~~~kvGd~i~~~V~~~~~--~-~-~~LS~~~ 382 (863)
T PRK12269 315 SFEAPEPGSVRMGTVVQVNAGTVFVDI--GGKSEGRVPVEEFE------APPKAGDGVRVYVERVTP--Y-G-PELSKTK 382 (863)
T ss_pred ccccCCCCCEEEEEEEEEECCEEEEEe--CCCceEEeEHHHhc------cCCCCCCEEEEEEEEEcC--C-c-eEEEehH
Confidence 456789999999999999999999999 89999999999984 236899999999999872 2 3 4443321
Q ss_pred ccccccccccccccCCCCCCcceEEEEEEEEe--CCeEEEEeCCCeeEEEEeeeecCCcCccccCcCcCCCCCCEEEEEE
Q 000236 919 ISETETSSSKRAKKKSSYDVGSLVQAEITEIK--PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 996 (1810)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~i~--~~~~~v~l~~~~~G~v~~~e~~d~~~~~~~~p~~~~~~G~~v~~~V 996 (1810)
... ...+.+....++.|++|+|+|.++. ++|+.|+++.+..|+++.+|+..... ..+ ...+|++++++|
T Consensus 383 ~~~----~~~~~~l~~a~~~g~~V~G~Vv~v~~~kgG~~Vdig~~~~gfiP~se~~~~~~----~~~-~~~vG~~ie~~V 453 (863)
T PRK12269 383 ADR----LGLKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDLGAGMMAFLPISQSDCQKV----DAP-ESLIGLTSKFYI 453 (863)
T ss_pred hhh----hHHHHHHHHHHhCCCeEEEEEEEEEeecCEEEEEECCCcEEEEEHHHhccccc----cch-HHhCCCeEEEEE
Confidence 110 0112223357789999999999984 57999999888999999999854321 112 235899999999
Q ss_pred EEeeecCCCCCcceEEEEeccCCccccccCCcccccccccCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCc
Q 000236 997 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1076 (1810)
Q Consensus 997 l~~~~~~~~~~~~~~~lS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~ 1076 (1810)
+.++....+...+.+.||+|..+-..........+++ +++|+.|+|+|.++.++|++|+++ +++|++|.++++|..
T Consensus 454 ~~~~~~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~--l~~G~~V~G~Vk~i~~~G~fVdl~-Gv~Gfvp~SeiS~~~- 529 (863)
T PRK12269 454 ERISQSKQHRGNDNIVINRRRYLEERARQAREEFFNS--VHIEDSVSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGH- 529 (863)
T ss_pred EEEecccccCCCCeEEEEHHHHHHHHHHHHHHHHHhc--CCCCCEEEEEEEEEeCCcEEEEEC-CEEEEEEchhccccc-
Confidence 9986321111234699999975432221101113443 689999999999999999999995 899999999999874
Q ss_pred hhhhhcccCCCCcEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEe
Q 000236 1077 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1156 (1810)
Q Consensus 1077 ~~~~~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l 1156 (1810)
+.++.+.|++||.++|+|++++++++++.||++... .+||....+.++ +|++++|+|+++.++ |+||+|
T Consensus 530 -v~~~~~~~kvGq~v~vkVi~iD~e~~rI~LSlK~l~---~~p~~~~~~~~~-----vG~iV~G~V~~I~~f--G~fVeL 598 (863)
T PRK12269 530 -VARPREFVKKGQTIELKVIRLDQAEKRINLSLKHFQ---PDPWLEFENKFG-----VNDVVKGRVTKIADF--GAFIEL 598 (863)
T ss_pred -cCCHHHhccCCCEEEEEEEEEecCCCeEEEEEeccc---cchhhhhhccCC-----CCCEEEEEEEEEeCC--eEEEEe
Confidence 456778899999999999999999999999999864 367765555555 999999999999999 999999
Q ss_pred CCceEEEEecccccc-cccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCCcceEEEeecccccCCCCCCCCCCC
Q 000236 1157 GPHLYGRVHFTELKN-ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1235 (1810)
Q Consensus 1157 ~~~~~G~i~~sel~d-~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~g~~~l~lS~r~~~~~~~~~~~~~~~ 1235 (1810)
++|+.|++|++|+++ ....+ |.+.|++||+|+|+|+++|.+ ++++.||++... .+|
T Consensus 599 ~~gveGLvhiSEls~~~~~~~-----------p~~~~kvGd~V~vkVl~iD~e---~~rIsLS~K~l~-----~~P---- 655 (863)
T PRK12269 599 AEGIEGLAHISEFSWVKKTSK-----------PSDMVKIGDEVECMILGYDIQ---AGRVSLGLKQVT-----ANP---- 655 (863)
T ss_pred cCCceeeeEHHHhcCccccCC-----------HHHcCCCCCEEEEEEEEEecc---cCceEEEehhcc-----cCc----
Confidence 999999999999976 33334 788899999999999999976 679999999886 232
Q ss_pred CCCCCCcccccccccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCccc-CCccccCCCCcEEEEEEEEEeCC
Q 000236 1236 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPL 1314 (1810)
Q Consensus 1236 ~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~-~~~~~~f~~G~~V~~~Vl~vd~~ 1314 (1810)
+....+++++|+++.|+|++++++|+||+++++++|+||.+++||... .++.+.|++||.|+|+|+++|++
T Consensus 656 --------w~~~~~~~~vG~~v~G~V~~i~~~G~fV~l~~gV~GlIh~sels~~~~~~~~~~~~kvGq~VkvkVl~ID~e 727 (863)
T PRK12269 656 --------WEEIEARYPVGARFTRRIVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQ 727 (863)
T ss_pred --------hHHHHHhCCCCCEEEEEEEEEecceEEEEeCCCcEEEEEhHHhhccccccchhhccCCCCEEEEEEEEEecc
Confidence 344456799999999999999999999999999999999999999765 44556899999999999999999
Q ss_pred CCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCc---ccccCC
Q 000236 1315 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI---ETIYRA 1391 (1810)
Q Consensus 1315 ~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~---~~~~~~ 1391 (1810)
++||.||+|+...+||.. ...++++|+++.|+|+++++||+||+|.+ +++|++|+|+++|++..++ .+.|++
T Consensus 728 ~rrI~LS~K~l~~dpw~~----~~~~~~vG~iV~GkV~~v~~~GvFVeL~~-gVeGlI~~s~lsdd~~~~~~~~~~~f~v 802 (863)
T PRK12269 728 ARRIRLGVKQLSDNPWQV----FANAYGVGSTVEGEVSSVTDFGIFVRVPG-GVEGLVRKQHLVENRDGDPGEALRKYAV 802 (863)
T ss_pred CCEEEEEecccccChHHH----HHhhCCCCCEEEEEEEEEecCeEEEEcCC-CeEEEEEHHHcCCcccccchhhccccCC
Confidence 999999999988888753 24568999999999999999999999987 8999999999999875443 356999
Q ss_pred CCEEEEEEEEEecCCCeeEEeecccc
Q 000236 1392 GEKVKVKILKVDKEKRRISLGMKSSY 1417 (1810)
Q Consensus 1392 G~~V~~~I~~id~~~~ri~lslk~~~ 1417 (1810)
||.|+++|+++|+++++|.||+|+..
T Consensus 803 GD~V~v~Vl~iD~~~rkI~LSlk~~~ 828 (863)
T PRK12269 803 GDRVKAVIVDMNVKDRKVAFSVRDYQ 828 (863)
T ss_pred CCEEEEEEEEEEcCCCEEEEEEechh
Confidence 99999999999999999999999753
No 8
>TIGR00717 rpsA ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned.
Probab=100.00 E-value=6.8e-56 Score=569.82 Aligned_cols=491 Identities=22% Similarity=0.291 Sum_probs=425.5
Q ss_pred ccccCCCceEEEEEEEEecCeEEEEeCCCeEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCCeEEEeeCchh
Q 000236 191 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 270 (1810)
Q Consensus 191 ~~~l~pG~~v~~~V~~v~~~gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~p~~ 270 (1810)
...+.||++|.|+|.+|.++|++|+|++..+|+++..+++... ..|++|+++.++|+.+++..+++.||+++..
T Consensus 13 ~~~~~~G~~v~g~V~~i~~~~~~v~~g~k~~g~i~~~E~~~~~------~~~~vGd~i~~~V~~~~~~~g~i~lS~~~~~ 86 (516)
T TIGR00717 13 TEETRPGSIVKGTVVAINKDTVFVDVGLKSEGRIPKEEFLDAP------LEIQVGDEVEVYLDRVEDRFGETVLSREKAQ 86 (516)
T ss_pred cccCCCCCEEEEEEEEEECCEEEEEcCCCcEEEEEHHHhcCCc------cCCCCCCEEEEEEEEEeCCCCcEEEEHHHhh
Confidence 3468999999999999999999999999999999999987532 4799999999999999988899999998765
Q ss_pred cc--CCCCCCCCCCCCeEEeeEEEEEeCCceeEEEeCCCCCcccEEEeecccchHHHHhhcccccCCCEEEEEEEEEeec
Q 000236 271 LH--NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 348 (1810)
Q Consensus 271 ~~--~~~~~~~~~~G~iv~~~~V~~v~~~~G~~v~i~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~ 348 (1810)
.. |.....++..|++++ ++|.++..+ |++|++++ ++||+|.++++.....+. .+.+|++++|+|+.++..
T Consensus 87 ~~~~~~~l~~a~~~g~~v~-g~V~~~~~~-g~~V~i~g----~~~flP~s~~~~~~~~~~--~~~vG~~i~~~v~~~~~~ 158 (516)
T TIGR00717 87 RHELWIKLEKAYEEGSIVE-GKIVGKVKG-GFIVDLNG----VEAFLPGSQVDVKPIKDL--DSLIGKTLKFKIIKLDQK 158 (516)
T ss_pred hhHHHHHHHHHhhCCCeEE-EEEEEEECC-EEEEEECC----EEEEEeHHHhcCcccCch--hhhCCCEEEEEEEEEECC
Confidence 32 222346678999998 788888887 99999972 699999999875433333 367999999999999998
Q ss_pred CCeEEEEeecccccc----cccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEE
Q 000236 349 EGLATGILKASAFEG----LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 424 (1810)
Q Consensus 349 ~~~~~~s~k~~~~~~----~~~~~~~l~~G~~v~g~V~~v~~~G~~V~~~~~v~g~vp~~~ls~~~~~~~~~~~~vG~~v 424 (1810)
.+.+++|+++..... ....++++++|++|+|+|+++.++|++|+++ +++|++|.++++|.+..+|.+.|++|++|
T Consensus 159 ~~~iv~Srk~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~~~~~~~~~~vG~~v 237 (516)
T TIGR00717 159 RNNIVVSRRAYLEEERSQAREELLENLKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKRVKHPSEYVKVGQEV 237 (516)
T ss_pred CCcEEEEHHHHHHHHHHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCCCCCHHHhccCCCEE
Confidence 889999987653321 2345678999999999999999999999996 79999999999998888888899999999
Q ss_pred EEEEEEE--eCCeEEEEEcchhhcchhhHHhhh-hhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeeccccCCC-CCCC
Q 000236 425 VFRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCE 500 (1810)
Q Consensus 425 ~~rVl~v--~~~~i~ls~k~~l~~~~~~~~~~~-~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~-~~~~ 500 (1810)
+|+|+++ +++++.||+|....+ +|..+ +.+++|+++.|+|+++.++|+||++.+++.||+|.++++|. ...+
T Consensus 238 ~v~Vl~~d~~~~~i~lS~k~~~~~----p~~~~~~~~~~G~i~~g~V~~v~~~G~fV~l~~~v~g~v~~sels~~~~~~~ 313 (516)
T TIGR00717 238 KVKVIKFDKEKGRISLSLKQLGED----PWEAIEKKFPVGDKITGRVTNLTDYGVFVEIEEGIEGLVHVSEMSWVKKNSH 313 (516)
T ss_pred EEEEEEEECCCCcEEEEEEecchh----HHHHHHhhccCCCEEEEEEEEeeCCcEEEEeCCCCEEEEEHHHcCCccccCC
Confidence 9999999 467899999987544 44444 34789999999999999999999999999999999999975 3456
Q ss_pred CCcCccCCCEEEEEEEEEeCCCCeEEEEEeeCC-CCcc-ccccccCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccc
Q 000236 501 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 578 (1810)
Q Consensus 501 ~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~-~~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~ 578 (1810)
|.+.|++||.|+|+|+++|++++++.||++... .+|. ..+.+++|++++|+|++++++|++|.+ +++++|+||.++
T Consensus 314 ~~~~~~vG~~v~v~V~~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l--~~~v~glv~~s~ 391 (516)
T TIGR00717 314 PSKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANPWEQFEEKHPVGDRVTGKIKKITDFGAFVEL--EGGIDGLIHLSD 391 (516)
T ss_pred HHHhccCCCEEEEEEEEEcCCCCEEEEEehhcccCcHHHHHHhCCCCCEEEEEEEEEecceEEEEC--CCCCEEEEEHHH
Confidence 667799999999999999999999999998653 3443 234688999999999999999999999 779999999999
Q ss_pred ccCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCCccccCCCCCEEEEEEEEEecCeEEEEEC
Q 000236 579 LADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 657 (1810)
Q Consensus 579 lsd~~~~~~~~~~~~k~G~~i~-~vl~id~~~~~v~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~ 657 (1810)
|+|.... ......|++|+.|+ +++.+|.+++++.||+|++..++|... .+++++|+++.|+|++++++|+||++.
T Consensus 392 ls~~~~~-~~~~~~~~~G~~V~~~Vl~vd~~~~~i~ls~K~~~~~p~~~~---~~~~~~G~~v~g~V~~v~~~G~fV~l~ 467 (516)
T TIGR00717 392 ISWDKDG-READHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTENPWEKF---AAKYKVGSVVKGKVTEIKDFGAFVELP 467 (516)
T ss_pred CcCcccC-CCHhHccCCCCEEEEEEEEEeCcCCEEEEeeccccCCchhhh---hhccCcceEEEEEEEEEecceEEEEcC
Confidence 9975321 12246899999999 899999999999999999998888643 356889999999999999999999999
Q ss_pred CCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeec
Q 000236 658 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706 (1810)
Q Consensus 658 ~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk 706 (1810)
+++.||+|.+++++++..++.+.|++||.|+|+|+++|++++|+.||+|
T Consensus 468 ~~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~id~~~~~i~ls~k 516 (516)
T TIGR00717 468 GGVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKVSLSVK 516 (516)
T ss_pred CCeEEEEEHHHcCccccccccccCCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999986
No 9
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=8e-55 Score=563.95 Aligned_cols=508 Identities=22% Similarity=0.305 Sum_probs=426.5
Q ss_pred cccCCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEeecCCCCcccceeheehhcc
Q 000236 841 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 920 (1810)
Q Consensus 841 ~~l~~g~~v~g~V~~i~~~~v~v~~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~~~~~~~~~~~~l~~~~~~ 920 (1810)
.++++|+.++|+|..+++++++|++ +++..|++|.+++.. ..+...|.+|+++.+.|..++ +..++++|+++...
T Consensus 26 ~~~~~G~~v~G~V~~v~~~~~~Vdi--g~k~~g~lp~~e~~~-~~~~~~~~vG~~i~~~V~~~~--~~~~~i~lS~k~~~ 100 (565)
T PRK06299 26 SETREGSIVKGTVVAIDKDYVLVDV--GLKSEGRIPLEEFKN-EQGELEVKVGDEVEVYVERIE--DGFGETVLSREKAK 100 (565)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEe--CCCeEEEEEHHHhcC-ccccccCCCCCEEEEEEEEEE--CCCCcEEEechHHH
Confidence 4578999999999999999999999 788999999999962 223447999999999999987 34566766554321
Q ss_pred ccccccccccccCCCCCCcceEEEEEEEEeCCeEEEEeCCCeeEEEEeeeecCCcCccccCcCcCCCCCCEEEEEEEEee
Q 000236 921 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1000 (1810)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~G~~v~~~V~~i~~~~~~v~l~~~~~G~v~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~ 1000 (1810)
. ...+..-...++.|++|+|+|.++.++|+.|+++ +.+|++|.+++.+... .++ .+.+|++++|+|+.++
T Consensus 101 ~----~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~~~-g~~gfip~s~~~~~~~---~~~--~~~vG~~i~~~V~~~d 170 (565)
T PRK06299 101 R----LEAWDKLEKAFENGEIVEGVINGKVKGGFTVDLN-GVEAFLPGSQVDVRPV---RDT--DPLEGKELEFKVIKLD 170 (565)
T ss_pred H----HHHHHHHHHHhhCCCEEEEEEEEEECCEEEEEEC-CEEEEEEHHHccCcCC---CCh--HHhCCCEEEEEEEEEE
Confidence 1 0112222346778999999999999999999998 8999999999965432 122 2569999999999998
Q ss_pred ecCCCCCcceEEEEeccCCccccccCCcccccccccCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhhh
Q 000236 1001 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1080 (1810)
Q Consensus 1001 ~~~~~~~~~~~~lS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~~ 1080 (1810)
.. ...+.||+|+.+-..........+.+ +++|+.++|+|..+.++|++|+++ ++.|++|.++++|.. +.+
T Consensus 171 ~~-----~~~i~lS~k~~~~~~~~~~~~~~~~~--l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~--~~~ 240 (565)
T PRK06299 171 KK-----RNNIVVSRRAVLEEERAEEREELLEN--LEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKR--VNH 240 (565)
T ss_pred CC-----CCEEEEEhHHhhhhhhhhHHHHHHhc--CCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccc--cCC
Confidence 32 23589999986532111000112333 699999999999999999999998 999999999999874 457
Q ss_pred hcccCCCCcEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCce
Q 000236 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1160 (1810)
Q Consensus 1081 ~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~ 1160 (1810)
+.+.|++||.|+|+|+.+|.+++++.||++... .+||......++ +|+++.|+|+++.++ |+||+++++.
T Consensus 241 ~~~~~kvG~~v~v~V~~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~~v~g~V~~i~~~--G~fV~l~~~v 310 (565)
T PRK06299 241 PSEVVNVGDEVKVKVLKFDKEKKRVSLGLKQLG---EDPWEAIEKKYP-----VGSKVKGKVTNITDY--GAFVELEEGI 310 (565)
T ss_pred HhhcCCCCCEEEEEEEEEeCCCCeEEEEEEecc---cChhHHHHhhCC-----CCCEEEEEEEEEeCC--eEEEEeCCCC
Confidence 778899999999999999999999999999864 367765444555 999999999999999 9999999999
Q ss_pred EEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCCcceEEEeecccccCCCCCCCCCCCCCCCC
Q 000236 1161 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1240 (1810)
Q Consensus 1161 ~G~i~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~g~~~l~lS~r~~~~~~~~~~~~~~~~~~~~ 1240 (1810)
.|++|++++++.... .+|...|++|+.|+|+|+++|++ ++++.||+|++. .+
T Consensus 311 ~Glv~~sel~~~~~~----------~~~~~~~~~G~~v~v~V~~id~~---~~~i~ls~k~~~-----~~---------- 362 (565)
T PRK06299 311 EGLVHVSEMSWTKKN----------KHPSKVVSVGQEVEVMVLEIDEE---KRRISLGLKQCK-----EN---------- 362 (565)
T ss_pred EEEEEHHHcCccccc----------cCHHHhcCCCCEEEEEEEEEcCC---CCEEEEehHHhc-----cc----------
Confidence 999999999764321 12667789999999999999986 679999999885 22
Q ss_pred CcccccccccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCccc-CCccccCCCCcEEEEEEEEEeCCCCEEE
Q 000236 1241 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1319 (1810)
Q Consensus 1241 ~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~-~~~~~~f~~G~~V~~~Vl~vd~~~~ri~ 1319 (1810)
++.....++++|+++.|+|++++++|+||+|+++++|++|+++++|.+. .+|.+.|++|+.|+|+|+++|+++++|.
T Consensus 363 --p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~g~i~~s~l~~~~~~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ 440 (565)
T PRK06299 363 --PWEEFAEKYPVGDVVEGKVKNITDFGAFVGLEGGIDGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERIS 440 (565)
T ss_pred --hhhhHHHhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHcCccccccChHhhCCCCCEEEEEEEEEeCCCCEEE
Confidence 2344556789999999999999999999999999999999999999887 8899999999999999999999999999
Q ss_pred EEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEE
Q 000236 1320 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1399 (1810)
Q Consensus 1320 lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I 1399 (1810)
||+|++..+||.. ...++++|++|.|+|+++.++|+||.+.+ ++.|+||.|++++.++.++.+.|++||.|+|+|
T Consensus 441 ls~k~~~~~p~~~----~~~~~~~G~vV~G~V~~v~~~G~fV~l~~-gi~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V 515 (565)
T PRK06299 441 LGIKQLEEDPFEE----FAKKHKKGSIVTGTVTEVKDKGAFVELED-GVEGLIRASELSRDRVEDATEVLKVGDEVEAKV 515 (565)
T ss_pred EEEehhhcCchhH----HHhhcCCCCEEEEEEEEEecCceEEecCC-CcEEEEEHHHhcchhccCccccCCCCCEEEEEE
Confidence 9999998877643 35678999999999999999999999986 899999999999999999999999999999999
Q ss_pred EEEecCCCeeEEeeccccc
Q 000236 1400 LKVDKEKRRISLGMKSSYF 1418 (1810)
Q Consensus 1400 ~~id~~~~ri~lslk~~~~ 1418 (1810)
+++|++++||+||+|++..
T Consensus 516 ~~vd~~~~~i~LS~k~~~~ 534 (565)
T PRK06299 516 INIDRKNRRISLSIKALDE 534 (565)
T ss_pred EEEccccCEEEEEeeehhh
Confidence 9999999999999998654
No 10
>TIGR00717 rpsA ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned.
Probab=100.00 E-value=1.4e-53 Score=548.29 Aligned_cols=502 Identities=20% Similarity=0.297 Sum_probs=418.1
Q ss_pred cccCCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEeecCCCCcccceeheehhcc
Q 000236 841 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 920 (1810)
Q Consensus 841 ~~l~~g~~v~g~V~~i~~~~v~v~~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~~~~~~~~~~~~l~~~~~~ 920 (1810)
.++++|+.+.|+|..+++++++|+| +++..|++|.+++.. +...|++||+|.+.|..++ +..+++.|+.....
T Consensus 14 ~~~~~G~~v~g~V~~i~~~~~~v~~--g~k~~g~i~~~E~~~---~~~~~~vGd~i~~~V~~~~--~~~g~i~lS~~~~~ 86 (516)
T TIGR00717 14 EETRPGSIVKGTVVAINKDTVFVDV--GLKSEGRIPKEEFLD---APLEIQVGDEVEVYLDRVE--DRFGETVLSREKAQ 86 (516)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEc--CCCcEEEEEHHHhcC---CccCCCCCCEEEEEEEEEe--CCCCcEEEEHHHhh
Confidence 3588999999999999999999999 899999999999852 2257999999999999876 35677776554321
Q ss_pred ccccccccccccCCCCCCcceEEEEEEEEeCCeEEEEeCCCeeEEEEeeeecCCcCccccCcCcCCCCCCEEEEEEEEee
Q 000236 921 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1000 (1810)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~G~~v~~~V~~i~~~~~~v~l~~~~~G~v~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~ 1000 (1810)
. ...+......++.|++++|+|.++.++|+.|+++ +.+|++|.+++.+... .+ ....+|++++++|+.++
T Consensus 87 ~----~~~~~~l~~a~~~g~~v~g~V~~~~~~g~~V~i~-g~~~flP~s~~~~~~~---~~--~~~~vG~~i~~~v~~~~ 156 (516)
T TIGR00717 87 R----HELWIKLEKAYEEGSIVEGKIVGKVKGGFIVDLN-GVEAFLPGSQVDVKPI---KD--LDSLIGKTLKFKIIKLD 156 (516)
T ss_pred h----hHHHHHHHHHhhCCCeEEEEEEEEECCEEEEEEC-CEEEEEeHHHhcCccc---Cc--hhhhCCCEEEEEEEEEE
Confidence 1 1122222346779999999999999999999997 8899999999854321 11 24579999999999998
Q ss_pred ecCCCCCcceEEEEeccCCccccccCCcccccccccCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhhh
Q 000236 1001 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1080 (1810)
Q Consensus 1001 ~~~~~~~~~~~~lS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~~ 1080 (1810)
.+ .+.+.||+|+.+...........++. +++|+.++|+|.++.++|++|+++ +++|++|.++++|.. ..+
T Consensus 157 ~~-----~~~iv~Srk~~l~~~~~~~~~~~~~~--l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~--~~~ 226 (516)
T TIGR00717 157 QK-----RNNIVVSRRAYLEEERSQAREELLEN--LKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKR--VKH 226 (516)
T ss_pred CC-----CCcEEEEHHHHHHHHHHHHHHHHHHh--ccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCC--CCC
Confidence 32 23589999976433211000112333 699999999999999999999996 799999999999864 456
Q ss_pred hcccCCCCcEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCce
Q 000236 1081 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1160 (1810)
Q Consensus 1081 ~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~ 1160 (1810)
+.+.|++|+.+.|+|+.+|.+++++.||++... .+||......++ +|+++.|+|+++.++ |+||+++++.
T Consensus 227 ~~~~~~vG~~v~v~Vl~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~i~~g~V~~v~~~--G~fV~l~~~v 296 (516)
T TIGR00717 227 PSEYVKVGQEVKVKVIKFDKEKGRISLSLKQLG---EDPWEAIEKKFP-----VGDKITGRVTNLTDY--GVFVEIEEGI 296 (516)
T ss_pred HHHhccCCCEEEEEEEEEECCCCcEEEEEEecc---hhHHHHHHhhcc-----CCCEEEEEEEEeeCC--cEEEEeCCCC
Confidence 777899999999999999999999999999764 356654433444 999999999999999 9999999999
Q ss_pred EEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCCcceEEEeecccccCCCCCCCCCCCCCCCC
Q 000236 1161 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1240 (1810)
Q Consensus 1161 ~G~i~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~g~~~l~lS~r~~~~~~~~~~~~~~~~~~~~ 1240 (1810)
.|++|++|++++... .+|...|++|+.|+|+|+++|.+ ++++.||+|.+. .
T Consensus 297 ~g~v~~sels~~~~~----------~~~~~~~~vG~~v~v~V~~id~~---~~~i~lS~k~~~-----~----------- 347 (516)
T TIGR00717 297 EGLVHVSEMSWVKKN----------SHPSKVVKKGDEVEVMILDIDPE---RRRLSLGLKQCK-----A----------- 347 (516)
T ss_pred EEEEEHHHcCCcccc----------CCHHHhccCCCEEEEEEEEEcCC---CCEEEEEehhcc-----c-----------
Confidence 999999999864221 12656789999999999999986 579999999875 2
Q ss_pred CcccccccccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCccc-CCccccCCCCcEEEEEEEEEeCCCCEEE
Q 000236 1241 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1319 (1810)
Q Consensus 1241 ~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~-~~~~~~f~~G~~V~~~Vl~vd~~~~ri~ 1319 (1810)
+++....+++++|++++|+|++++++|+||+++++++|++|+++++|.+. .++...|++|+.|.|+|+++|+++++|.
T Consensus 348 -~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~glv~~s~ls~~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~i~ 426 (516)
T TIGR00717 348 -NPWEQFEEKHPVGDRVTGKIKKITDFGAFVELEGGIDGLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRIS 426 (516)
T ss_pred -CcHHHHHHhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHCcCcccCCCHhHccCCCCEEEEEEEEEeCcCCEEE
Confidence 23444456789999999999999999999999999999999999999764 4677889999999999999999999999
Q ss_pred EEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEE
Q 000236 1320 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1399 (1810)
Q Consensus 1320 lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I 1399 (1810)
||+|++..+||.. ...++++|+++.|+|++++++|+||.|++ ++.||||.|++++++++++.+.|++||.|+++|
T Consensus 427 ls~K~~~~~p~~~----~~~~~~~G~~v~g~V~~v~~~G~fV~l~~-~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V 501 (516)
T TIGR00717 427 LGVKQLTENPWEK----FAAKYKVGSVVKGKVTEIKDFGAFVELPG-GVEGLIRNSELSENRDEDKTDEIKVGDEVEAKV 501 (516)
T ss_pred EeeccccCCchhh----hhhccCcceEEEEEEEEEecceEEEEcCC-CeEEEEEHHHcCccccccccccCCCCCEEEEEE
Confidence 9999988877643 25679999999999999999999999986 799999999999999999999999999999999
Q ss_pred EEEecCCCeeEEeec
Q 000236 1400 LKVDKEKRRISLGMK 1414 (1810)
Q Consensus 1400 ~~id~~~~ri~lslk 1414 (1810)
+++|.+++||+||+|
T Consensus 502 ~~id~~~~~i~ls~k 516 (516)
T TIGR00717 502 VDIDKKNRKVSLSVK 516 (516)
T ss_pred EEEeCCCCEEEEEEC
Confidence 999999999999987
No 11
>PRK13806 rpsA 30S ribosomal protein S1; Provisional
Probab=100.00 E-value=1e-49 Score=500.04 Aligned_cols=418 Identities=19% Similarity=0.285 Sum_probs=356.4
Q ss_pred CCCCcceEEEEEEEEeCCeEEEEeCCCeeEEEEeeeecCCcCccccCcCcCCCCCCEEEEEEEEeeecCCCCCcceEEEE
Q 000236 935 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1014 (1810)
Q Consensus 935 ~~~~G~~v~~~V~~i~~~~~~v~l~~~~~G~v~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~~~~~~~~~lS 1014 (1810)
.+.+|++|+|+|+++.+++++|+++.+..|+|+.+|+.+... ...+++|++++|+|++++ ...+.||
T Consensus 31 ~~~~G~~v~G~V~~v~~~~v~Vdig~k~eg~ip~~e~~~~~~------~~~~~~G~~i~~~Vi~~~-------~~~~~lS 97 (491)
T PRK13806 31 ELRVGDKITGTVIAITEDSVFVDTGSKVDGVVDRAELLDADG------ELTVAVGDEVELYVVSVN-------GQEIRLS 97 (491)
T ss_pred cCCCCCEEEEEEEEEECCEEEEEECCCcEEEEEHHHhcCccc------cccccCCCEEEEEEEEEc-------CCEEEEE
Confidence 488999999999999999999999999999999999975432 135799999999999885 1248889
Q ss_pred eccCCccccccCCcccccccccCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhhhhcccCCCCcEEEEE
Q 000236 1015 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1094 (1810)
Q Consensus 1015 ~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~~~~~~~~vG~~v~~~ 1094 (1810)
++... ...+ ..+.+ .++.|+.|+|+|.++.++|++|++. +++|++|.+++++.. ..++.. + +|+.++|+
T Consensus 98 ~~~~~-~~~~----~~l~~-~~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~--~~~~~~-~-vG~~i~~~ 166 (491)
T PRK13806 98 KALSG-QGGA----AMLEE-AYENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRY--VEDPES-Y-VGQTFQFL 166 (491)
T ss_pred hHHhh-hhhH----HHHHH-HHhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhcccc--CCChHH-c-CCCeEEEE
Confidence 66431 1111 12333 3789999999999999999999997 899999999988763 223333 3 99999999
Q ss_pred EEEEeCCCcEEEEEecccccCC-CCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCceEEEEecccccccc
Q 000236 1095 VLSINKEKKLLRLVLRPFQDGI-SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1173 (1810)
Q Consensus 1095 V~~~~~~~~~~~Ls~~~~~~~~-~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~~G~i~~sel~d~~ 1173 (1810)
|+.++++++++.||++...... ...|.....+ +++|++++|+|+++.++ |+||+++.+..|+||++|+++++
T Consensus 167 V~~id~~~~~v~lSrk~~~~~~~~~~~~~~~~~-----l~~G~iv~G~V~~v~~~--G~fV~l~~gv~g~v~~sels~~~ 239 (491)
T PRK13806 167 ITRVEENGRNIVVSRRALLEREQKEALEAFMET-----VKEGDVVEGTVTRLAPF--GAFVELAPGVEGMVHISELSWSR 239 (491)
T ss_pred EEEEECCCCeEEEEeehhhhhhhHHHHHHHHhh-----CCCCCEEEEEEEEEeCC--eEEEEcCCCcEEEEEHHHCCCcc
Confidence 9999999999999998864322 1233322233 55999999999999998 99999998999999999999988
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCC-cceEEEeecccccCCCCCCCCCCCCCCCCCcccccccccCC
Q 000236 1174 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG-TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1252 (1810)
Q Consensus 1174 ~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~g-~~~l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1252 (1810)
..+ |...|++||.|+|+|+++|.+.++ ..++.||+|++. . +++.....+++
T Consensus 240 ~~~-----------~~~~~~vGd~i~vkVl~id~~~~~~~~ri~lS~K~~~-----~------------~p~~~~~~~~~ 291 (491)
T PRK13806 240 VQK-----------ADEAVSVGDTVRVKVLGIERAKKGKGLRISLSIKQAG-----G------------DPWDTVGDRLK 291 (491)
T ss_pred ccC-----------hhHhcCCCCEEEEEEEEEecccCCcceEEEEEehhhh-----c------------ccchhhhccCC
Confidence 776 778899999999999999975321 158999999986 2 23455567899
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCC-cccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccc
Q 000236 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD-GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1331 (1810)
Q Consensus 1253 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~-~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~ 1331 (1810)
+|+++.|+|++++++|+||+++++++|++|+++++| .++.+|.+.|++||.|+|+|+++|+++++|.||+|++..+||.
T Consensus 292 ~G~~v~G~V~~v~~~G~fV~l~~gv~Glvh~sels~~~~~~~~~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~~ 371 (491)
T PRK13806 292 AGDKVTGKVVRLAPFGAFVEILPGIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPWA 371 (491)
T ss_pred CCCEEEEEEEEEeCceEEEEeCCCcEEEEEHHHcCcccccCCHHHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChhH
Confidence 999999999999999999999999999999999998 4678899999999999999999999999999999999988875
Q ss_pred cccccccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEE
Q 000236 1332 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411 (1810)
Q Consensus 1332 ~~~~~~~~~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~l 1411 (1810)
.. ..++++|++|.|+|+++.+||+||+|.+ +++||||+|++++.+..++.+.|++||.|+++|+++|++++||+|
T Consensus 372 ~~----~~~~~vG~~v~G~V~~i~~~G~FV~l~~-gv~Gli~~se~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~L 446 (491)
T PRK13806 372 DV----AERFAPGTTVTGTVEKRAQFGLFVNLAP-GVTGLLPASVISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISL 446 (491)
T ss_pred Hh----hhhCCCCCEEEEEEEEEecCceEEEcCC-CcEEEEEHHHcCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEE
Confidence 43 5689999999999999999999999987 899999999999999888999999999999999999999999999
Q ss_pred eeccc
Q 000236 1412 GMKSS 1416 (1810)
Q Consensus 1412 slk~~ 1416 (1810)
|+|..
T Consensus 447 s~~~~ 451 (491)
T PRK13806 447 APAGA 451 (491)
T ss_pred Eeehh
Confidence 99963
No 12
>PRK13806 rpsA 30S ribosomal protein S1; Provisional
Probab=100.00 E-value=1.1e-48 Score=490.67 Aligned_cols=412 Identities=20% Similarity=0.286 Sum_probs=355.0
Q ss_pred CCCCCCeEEeeEEEEEeCCceeEEEeCCCCCcccEEEeecccchHHHHhhcccccCCCEEEEEEEEEeecCCeEEEEeec
Q 000236 279 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 358 (1810)
Q Consensus 279 ~~~~G~iv~~~~V~~v~~~~G~~v~i~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~~~~~~~s~k~ 358 (1810)
.+.+|++++ ++|++++.+ |++|+++.+ ..||+|.+++.+.. ....+++|+++.|+|++++. +.+.+|.+.
T Consensus 31 ~~~~G~~v~-G~V~~v~~~-~v~Vdig~k---~eg~ip~~e~~~~~---~~~~~~~G~~i~~~Vi~~~~--~~~~lS~~~ 100 (491)
T PRK13806 31 ELRVGDKIT-GTVIAITED-SVFVDTGSK---VDGVVDRAELLDAD---GELTVAVGDEVELYVVSVNG--QEIRLSKAL 100 (491)
T ss_pred cCCCCCEEE-EEEEEEECC-EEEEEECCC---cEEEEEHHHhcCcc---ccccccCCCEEEEEEEEEcC--CEEEEEhHH
Confidence 488999998 788899988 999999854 48999998876321 12248999999999999874 457778553
Q ss_pred ccccccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE--eCCeE
Q 000236 359 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 436 (1810)
Q Consensus 359 ~~~~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~~~~~v~g~vp~~~ls~~~~~~~~~~~~vG~~v~~rVl~v--~~~~i 436 (1810)
.....+....+.+++|++|+|+|+++.++|++|++. |+.||+|.+|+++....+|+. | +|++++|+|+.+ +++++
T Consensus 101 ~~~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~~~~~~~-~-vG~~i~~~V~~id~~~~~v 177 (491)
T PRK13806 101 SGQGGAAMLEEAYENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRYVEDPES-Y-VGQTFQFLITRVEENGRNI 177 (491)
T ss_pred hhhhhHHHHHHHHhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhccccCCChHH-c-CCCeEEEEEEEEECCCCeE
Confidence 322333444677899999999999999999999997 899999999999876677764 3 999999999999 45799
Q ss_pred EEEEcchhhcchhhHHhh-hhhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeeccccCCCCCCCCCcCccCCCEEEEEE
Q 000236 437 TVTHKKTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 515 (1810)
Q Consensus 437 ~ls~k~~l~~~~~~~~~~-~~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rV 515 (1810)
.||+|..+.......|.. +..+++|+++.|+|+++.++|+||++++++.||+|.++++|.+..+|.+.|++||.++|+|
T Consensus 178 ~lSrk~~~~~~~~~~~~~~~~~l~~G~iv~G~V~~v~~~G~fV~l~~gv~g~v~~sels~~~~~~~~~~~~vGd~i~vkV 257 (491)
T PRK13806 178 VVSRRALLEREQKEALEAFMETVKEGDVVEGTVTRLAPFGAFVELAPGVEGMVHISELSWSRVQKADEAVSVGDTVRVKV 257 (491)
T ss_pred EEEeehhhhhhhHHHHHHHHhhCCCCCEEEEEEEEEeCCeEEEEcCCCcEEEEEHHHCCCccccChhHhcCCCCEEEEEE
Confidence 999998776544445544 4457899999999999999999999988999999999999998889999999999999999
Q ss_pred EEEeCCC----CeEEEEEeeCC-CCccc-cccccCCCeEEEEEEEEecCcEEEEEEecCceeEEEecccccCcccccccc
Q 000236 516 MSSIPAS----RRINLSFMMKP-TRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 589 (1810)
Q Consensus 516 l~~d~~~----~~l~lS~k~~~-~~~~~-~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~ 589 (1810)
+++|+++ +|+.||+++.. .||.. ...+++|++++|+|++++++|+||++ .++++|+||.++|+|... ....
T Consensus 258 l~id~~~~~~~~ri~lS~K~~~~~p~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l--~~gv~Glvh~sels~~~~-~~~~ 334 (491)
T PRK13806 258 LGIERAKKGKGLRISLSIKQAGGDPWDTVGDRLKAGDKVTGKVVRLAPFGAFVEI--LPGIEGLVHVSEMSWTRR-VNKP 334 (491)
T ss_pred EEEecccCCcceEEEEEehhhhcccchhhhccCCCCCEEEEEEEEEeCceEEEEe--CCCcEEEEEHHHcCcccc-cCCH
Confidence 9999986 47999998763 35543 46789999999999999999999999 778999999999997422 1223
Q ss_pred cccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCc
Q 000236 590 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 668 (1810)
Q Consensus 590 ~~~~k~G~~i~-~vl~id~~~~~v~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ 668 (1810)
.+.+++||.|+ +++.+|.+++++.||+|+...+||.... +++++|++++|+|+++++||+||++.+|+.||||+|+
T Consensus 335 ~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~~~~~---~~~~vG~~v~G~V~~i~~~G~FV~l~~gv~Gli~~se 411 (491)
T PRK13806 335 EDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPWADVA---ERFAPGTTVTGTVEKRAQFGLFVNLAPGVTGLLPASV 411 (491)
T ss_pred HHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChhHHhh---hhCCCCCEEEEEEEEEecCceEEEcCCCcEEEEEHHH
Confidence 56899999999 8999999999999999999999998654 4688999999999999999999999999999999999
Q ss_pred cCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000236 669 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709 (1810)
Q Consensus 669 ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~ 709 (1810)
++|++..++.+.|++||+|+|+|+++|++++|++||++...
T Consensus 412 ~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~Ls~~~~~ 452 (491)
T PRK13806 412 ISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLAPAGAA 452 (491)
T ss_pred cCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEEEeehhh
Confidence 99999999999999999999999999999999999999653
No 13
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=7.6e-43 Score=428.33 Aligned_cols=333 Identities=27% Similarity=0.379 Sum_probs=291.1
Q ss_pred cCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhhhhcccCCCCcEEEEEEEEEeCCCcEEEEEecccccC
Q 000236 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1115 (1810)
Q Consensus 1036 ~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~~~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~ 1115 (1810)
+++|++|+|+|.++.+++++|+|+++++|+||..++++.. ..++.+.|++|+.|+|+|+++++.++++.||++.+..
T Consensus 33 ~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~--~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~- 109 (486)
T PRK07899 33 FNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKH--DVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY- 109 (486)
T ss_pred CCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccc--cCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc-
Confidence 6999999999999999999999999999999999999864 3467778999999999999999999999999998643
Q ss_pred CCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCC
Q 000236 1116 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1195 (1810)
Q Consensus 1116 ~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~~G~i~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G 1195 (1810)
..+|....+.+. .|++++|+|+++.++ |++|++ |++|++|.++++..+..+ +. . .+|
T Consensus 110 -~~~w~~ie~~~e-----~g~~V~G~V~~v~k~--G~~Vdl--Gi~gflP~Sel~~~~~~~-----------~~-~-~vG 166 (486)
T PRK07899 110 -ERAWGTIEKIKE-----KDGVVTGTVIEVVKG--GLILDI--GLRGFLPASLVEMRRVRD-----------LQ-P-YIG 166 (486)
T ss_pred -cchHHHHHHHhc-----CCCEEEEEEEEEECC--eEEEEE--CCEEEEEhhHhcccccCC-----------hh-h-cCC
Confidence 245543333333 899999999999998 999999 589999999997765544 32 2 389
Q ss_pred CEEEEEEEEeecCCCCcceEEEeecccccCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEeeceEEEEeCC
Q 000236 1196 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1275 (1810)
Q Consensus 1196 ~~v~~~Vl~~~~~~~g~~~l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~ 1275 (1810)
+.|+|+|+++|++ ++++.||+|... +... ..++...+.++++|+++.|+|++++++|+||+|+
T Consensus 167 q~V~vkVleid~~---~~~ivLSrr~~l-----~~~~--------~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdlg- 229 (486)
T PRK07899 167 QEIEAKIIELDKN---RNNVVLSRRAWL-----EQTQ--------SEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLG- 229 (486)
T ss_pred CEEEEEEEEEECC---CCEEEEEhHHHH-----Hhhh--------HHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-
Confidence 9999999999976 679999999754 1000 1123445678999999999999999999999997
Q ss_pred CcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEEe
Q 000236 1276 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1355 (1810)
Q Consensus 1276 ~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~i~ 1355 (1810)
+++||||+++++|.++.+|.+.|++||.|+|+|+++|++++||.||+|+...+||.. ....+++|+++.|+|+++.
T Consensus 230 gv~Glv~~Sels~~~v~~~~~~~kvGd~V~vkVl~iD~e~~rI~LSlK~~~~dPw~~----~~~~~~vG~vv~G~V~~I~ 305 (486)
T PRK07899 230 GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ----FARTHAIGQIVPGKVTKLV 305 (486)
T ss_pred CEEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeeccccchhh----hHHhcCCCCEEEEEEEEEe
Confidence 799999999999999999999999999999999999999999999999999888743 2456889999999999999
Q ss_pred eceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000236 1356 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416 (1810)
Q Consensus 1356 ~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~ 1416 (1810)
+||+||+|.+ ++.||||+|++++.++.++.+.|++||.|+++|+++|++++||+||+|+.
T Consensus 306 ~fGvFVeL~~-gieGLvh~SeLs~~~v~~~~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~ 365 (486)
T PRK07899 306 PFGAFVRVEE-GIEGLVHISELAERHVEVPEQVVQVGDEVFVKVIDIDLERRRISLSLKQA 365 (486)
T ss_pred ccEEEEEeCC-CcEEEEEHHHcCcccccCccceeCCCCEEEEEEEEEECCCCEEEEEEEEc
Confidence 9999999986 89999999999999988899999999999999999999999999999985
No 14
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=1.3e-42 Score=426.24 Aligned_cols=328 Identities=21% Similarity=0.264 Sum_probs=291.0
Q ss_pred cccCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE--eCCeEEEEEcchhh
Q 000236 368 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 445 (1810)
Q Consensus 368 ~~~l~~G~~v~g~V~~v~~~G~~V~~~~~v~g~vp~~~ls~~~~~~~~~~~~vG~~v~~rVl~v--~~~~i~ls~k~~l~ 445 (1810)
+..+++|++|+|+|++++++|++|+++.+++|+||..|+++.+..+|++.|++|++|+|+|+.+ ..+++.||+|+...
T Consensus 30 ~~~~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~ 109 (486)
T PRK07899 30 IKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY 109 (486)
T ss_pred HhcCCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccccCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc
Confidence 5669999999999999999999999998999999999999988889999999999999999999 45789999998654
Q ss_pred cchhhHHhhhhhc-CCCcEEEEEEEEEeeceEEEEEcCCeEEEeeccccCCCCCCCCCcCccCCCEEEEEEEEEeCCCCe
Q 000236 446 KSKLAILSSYAEA-TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 524 (1810)
Q Consensus 446 ~~~~~~~~~~~~~-~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~ 524 (1810)
. ..|..++++ +.|+++.|+|+++.++|+||++ |++||+|.|++++.++.++.. .+||+|+|+|+++|+++++
T Consensus 110 ~---~~w~~ie~~~e~g~~V~G~V~~v~k~G~~Vdl--Gi~gflP~Sel~~~~~~~~~~--~vGq~V~vkVleid~~~~~ 182 (486)
T PRK07899 110 E---RAWGTIEKIKEKDGVVTGTVIEVVKGGLILDI--GLRGFLPASLVEMRRVRDLQP--YIGQEIEAKIIELDKNRNN 182 (486)
T ss_pred c---chHHHHHHHhcCCCEEEEEEEEEECCeEEEEE--CCEEEEEhhHhcccccCChhh--cCCCEEEEEEEEEECCCCE
Confidence 3 357777776 4799999999999999999999 699999999999876666654 3999999999999999999
Q ss_pred EEEEEeeCCC-----Cc-cccccccCCCeEEEEEEEEecCcEEEEEEecCceeEEEecccccCcccccccccccccCCCe
Q 000236 525 INLSFMMKPT-----RV-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 598 (1810)
Q Consensus 525 l~lS~k~~~~-----~~-~~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~ 598 (1810)
+.||++.... ++ .....+++|++++|+|++++++|+||.+ ++++|+||.++|+|.... ...+.|++||+
T Consensus 183 ivLSrr~~l~~~~~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdl---ggv~Glv~~Sels~~~v~--~~~~~~kvGd~ 257 (486)
T PRK07899 183 VVLSRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHID--HPSEVVEVGQE 257 (486)
T ss_pred EEEEhHHHHHhhhHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEE---CCEEEEEEHHHCCCcccC--CHHHhcCCCCE
Confidence 9999984311 11 2235788999999999999999999999 469999999999985432 23467999999
Q ss_pred Ee-eEEEeecCCCeEEEeccchhcchhccCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCc
Q 000236 599 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 677 (1810)
Q Consensus 599 i~-~vl~id~~~~~v~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~ 677 (1810)
|+ +++.+|.+++++.||+|+...+||.... ..+++|+++.|+|++++++|+||++.+|+.||+|++++++.++.++
T Consensus 258 V~vkVl~iD~e~~rI~LSlK~~~~dPw~~~~---~~~~vG~vv~G~V~~I~~fGvFVeL~~gieGLvh~SeLs~~~v~~~ 334 (486)
T PRK07899 258 VTVEVLDVDMDRERVSLSLKATQEDPWQQFA---RTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVP 334 (486)
T ss_pred EEEEEEEEECCCCEEEEEEeeccccchhhhH---HhcCCCCEEEEEEEEEeccEEEEEeCCCcEEEEEHHHcCcccccCc
Confidence 99 8999999999999999999999986533 3467899999999999999999999999999999999999999999
Q ss_pred ccCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 678 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 678 ~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
.+.|++||+|+|+|+++|++++|+.||+|+...
T Consensus 335 ~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~~~ 367 (486)
T PRK07899 335 EQVVQVGDEVFVKVIDIDLERRRISLSLKQANE 367 (486)
T ss_pred cceeCCCCEEEEEEEEEECCCCEEEEEEEEccc
Confidence 999999999999999999999999999998865
No 15
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=4.4e-40 Score=407.47 Aligned_cols=334 Identities=24% Similarity=0.303 Sum_probs=293.1
Q ss_pred ccccccccCCCCCEEEEEEEEEecCceEEEe-CCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE--eCCeEEEE
Q 000236 363 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 439 (1810)
Q Consensus 363 ~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~~-~~~v~g~vp~~~ls~~~~~~~~~~~~vG~~v~~rVl~v--~~~~i~ls 439 (1810)
+...++.++++|++|+|+|++++++|++|++ +++++|++|..|+++....+|...|++|++|+|+|+.+ +++++.||
T Consensus 7 ~~~~~~~~~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~~~~~~~~~~vGd~v~~~V~~v~~~~~~i~lS 86 (390)
T PRK06676 7 ESLNSVKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDELEVYVLKVEDGEGNLLLS 86 (390)
T ss_pred HHhhhhhcccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhccccccCcccccCCCCEEEEEEEEEECCCCCEEEE
Confidence 3345778899999999999999999999999 77899999999999988889999999999999999999 45679999
Q ss_pred EcchhhcchhhHHhhhhh-cCCCcEEEEEEEEEeeceEEEEEcCCeEEEeeccccCCCCCCCCCcCccCCCEEEEEEEEE
Q 000236 440 HKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 518 (1810)
Q Consensus 440 ~k~~l~~~~~~~~~~~~~-~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~ 518 (1810)
+|+.... +.|..+.+ .++|++++|+|+++.++|+||++ +|++||+|.+++++....++.. + +|++++|+|+++
T Consensus 87 ~k~~~~~---~~~~~~~~~~~~G~~v~g~V~~v~~~G~~V~~-~G~~gflp~~el~~~~~~~~~~-~-vG~~v~~~Vl~~ 160 (390)
T PRK06676 87 KRRLEAE---KAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDV-EGVRGFIPASLISTRFVEDFSD-F-KGKTLEVKIIEL 160 (390)
T ss_pred HHHhhhh---hhHHHHHHhccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcCCccCCChHH-c-CCCEEEEEEEEE
Confidence 9976432 34555543 47899999999999999999999 6889999999999876666654 3 999999999999
Q ss_pred eCCCCeEEEEEeeCCCC-----c-cccccccCCCeEEEEEEEEecCcEEEEEEecCceeEEEecccccCccccccccccc
Q 000236 519 IPASRRINLSFMMKPTR-----V-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 592 (1810)
Q Consensus 519 d~~~~~l~lS~k~~~~~-----~-~~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~ 592 (1810)
|++++++.||++..... + .....+++|++|+|+|+++.++|++|.+ ++++|+||.++++|... ....+.
T Consensus 161 d~~~~~i~lS~k~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l---~~v~g~v~~sels~~~~--~~~~~~ 235 (390)
T PRK06676 161 DPEKNRVILSRRAVVEEERAAKKEELLSSLKEGDVVEGTVARLTDFGAFVDI---GGVDGLVHISELSHERV--EKPSEV 235 (390)
T ss_pred ECCCCEEEEEeHHHhhhhhhhHHHHHHhhCCCCCEEEEEEEEEecceEEEEe---CCeEEEEEHHHcCcccc--CCHHHh
Confidence 99999999999864221 1 1235678999999999999999999999 46999999999997532 233567
Q ss_pred ccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCc
Q 000236 593 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 671 (1810)
Q Consensus 593 ~k~G~~i~-~vl~id~~~~~v~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~ 671 (1810)
+++||.|+ +++.+|.+++++.||+|+.+.++|... ++++++|+++.|+|++++++|+||++.+|+.||+|.|++++
T Consensus 236 ~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~~---~~~~~~G~~v~g~V~~i~~~G~fV~l~~gi~Glv~~se~~~ 312 (390)
T PRK06676 236 VSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEGV---EEKLPEGDVIEGTVKRLTDFGAFVEVLPGVEGLVHISQISH 312 (390)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEEEEeecccCccccc---hhhhcCCcEEEEEEEEEeCceEEEEECCCCeEEEEhHHcCc
Confidence 89999999 889999999999999999998888654 45689999999999999999999999999999999999999
Q ss_pred ccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 672 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 672 ~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
.+..++.+.|++||+|+|+|+++|++++|+.||+|+...
T Consensus 313 ~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 313 KHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred cccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 988889999999999999999999999999999998765
No 16
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=4.5e-39 Score=398.50 Aligned_cols=336 Identities=26% Similarity=0.429 Sum_probs=292.3
Q ss_pred cCCCCEEEEEEEEEeCCEEEEEe-CCCeEEEEEccccCCCCchhhhhcccCCCCcEEEEEEEEEeCCCcEEEEEeccccc
Q 000236 1036 VSIGQRVTGYVYKVDNEWALLTI-SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1114 (1810)
Q Consensus 1036 ~~~G~~v~g~V~~v~~~~~~v~l-~~~~~g~l~~~~~~~~~~~~~~~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~ 1114 (1810)
+++|+.|+|+|.++.+++++|++ +++..|++|..++++.. ..++...|++|+.++|+|+.++.+++++.||++++..
T Consensus 15 ~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~--~~~~~~~~~vGd~v~~~V~~v~~~~~~i~lS~k~~~~ 92 (390)
T PRK06676 15 VEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDH--IEDINDVVKVGDELEVYVLKVEDGEGNLLLSKRRLEA 92 (390)
T ss_pred ccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhcccc--ccCcccccCCCCEEEEEEEEEECCCCCEEEEHHHhhh
Confidence 69999999999999999999999 88999999999998763 3567778999999999999999999999999998632
Q ss_pred CCCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCC
Q 000236 1115 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1194 (1810)
Q Consensus 1115 ~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~~G~i~~sel~d~~~~~~~~~~~~~~~~p~~~~~~ 1194 (1810)
...|......+ ++|+++.|+|+++.++ |++|+++ |.+|+||++|+++.+..+ |.. + +
T Consensus 93 --~~~~~~~~~~~-----~~G~~v~g~V~~v~~~--G~~V~~~-G~~gflp~~el~~~~~~~-----------~~~-~-v 149 (390)
T PRK06676 93 --EKAWDKLEEKF-----EEGEVVEVKVTEVVKG--GLVVDVE-GVRGFIPASLISTRFVED-----------FSD-F-K 149 (390)
T ss_pred --hhhHHHHHHhc-----cCCCEEEEEEEEEECC--eEEEEEC-CEEEEEEHHHcCCccCCC-----------hHH-c-C
Confidence 23454333333 4999999999999998 9999995 679999999998877655 432 4 8
Q ss_pred CCEEEEEEEEeecCCCCcceEEEeecccccCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEeeceEEEEeC
Q 000236 1195 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274 (1810)
Q Consensus 1195 G~~v~~~Vl~~~~~~~g~~~l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~ 1274 (1810)
|+.++|+|++++++ ++++.||+|... ... ...++...+.++++|+++.|+|+++.++|+||+++
T Consensus 150 G~~v~~~Vl~~d~~---~~~i~lS~k~~~-----~~~--------~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~ 213 (390)
T PRK06676 150 GKTLEVKIIELDPE---KNRVILSRRAVV-----EEE--------RAAKKEELLSSLKEGDVVEGTVARLTDFGAFVDIG 213 (390)
T ss_pred CCEEEEEEEEEECC---CCEEEEEeHHHh-----hhh--------hhhHHHHHHhhCCCCCEEEEEEEEEecceEEEEeC
Confidence 99999999999975 679999999874 100 01123334567899999999999999999999996
Q ss_pred CCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEE
Q 000236 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1354 (1810)
Q Consensus 1275 ~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~i 1354 (1810)
+++|++|+++++|.++.+|.+.|++|+.|+|+|+++|++++++.||+|+...+||.. ...++++|+++.|+|+++
T Consensus 214 -~v~g~v~~sels~~~~~~~~~~~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~----~~~~~~~G~~v~g~V~~i 288 (390)
T PRK06676 214 -GVDGLVHISELSHERVEKPSEVVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEG----VEEKLPEGDVIEGTVKRL 288 (390)
T ss_pred -CeEEEEEHHHcCccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEeecccCcccc----chhhhcCCcEEEEEEEEE
Confidence 799999999999999999999999999999999999999999999999988777643 356899999999999999
Q ss_pred eeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccccc
Q 000236 1355 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418 (1810)
Q Consensus 1355 ~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~~~ 1418 (1810)
.++|+||++.+ ++.|++|+|++++.++.++.+.|++||.|+|+|+++|++++||.||+|+...
T Consensus 289 ~~~G~fV~l~~-gi~Glv~~se~~~~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 289 TDFGAFVEVLP-GVEGLVHISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred eCceEEEEECC-CCeEEEEhHHcCccccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 99999999986 8999999999999988888899999999999999999999999999998644
No 17
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=5.7e-37 Score=398.20 Aligned_cols=335 Identities=24% Similarity=0.407 Sum_probs=293.5
Q ss_pred cCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhhhhcccCCCCcEEEEEEEEEeCCCcEEEEEecccccC
Q 000236 1036 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1115 (1810)
Q Consensus 1036 ~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~~~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~ 1115 (1810)
+++|+.|+|+|.++.+++++|+++....|++|..+++++. ..++.+.|++|+.++|+|++++++++++.||++.+..
T Consensus 300 l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~--~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~~~~- 376 (647)
T PRK00087 300 IRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDE--ISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKEADR- 376 (647)
T ss_pred ccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccc--cCChhhccCCCCEEEEEEEEEECCCCcEEEEeehhcc-
Confidence 6999999999999999999999999999999999998763 4567788999999999999999989999999998743
Q ss_pred CCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCC
Q 000236 1116 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1195 (1810)
Q Consensus 1116 ~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~~G~i~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G 1195 (1810)
...|....+.+ ++|+++.|+|+++.++ |++|+++ +.+|+||.+|+++.+..+ |. .+ +|
T Consensus 377 -~~~~~~l~~~~-----~~G~iv~g~V~~v~~~--G~~V~lg-gi~gfiP~sel~~~~~~d-----------~~-~~-vG 434 (647)
T PRK00087 377 -EKAWKELEEAF-----ENGEPVKGKVKEVVKG--GLLVDYG-GVRAFLPASHVELGYVED-----------LS-EY-KG 434 (647)
T ss_pred -hhHHHHHHHHh-----hCCCEEEEEEEEEECC--eEEEEEC-CEEEEEEHHHhCccccCC-----------HH-Hh-CC
Confidence 23454333333 4999999999999988 9999998 499999999998887665 43 24 89
Q ss_pred CEEEEEEEEeecCCCCcce-EEEeecccccCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEeeceEEEEeC
Q 000236 1196 QFVKCKVLEISRTVRGTFH-VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1274 (1810)
Q Consensus 1196 ~~v~~~Vl~~~~~~~g~~~-l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~ 1274 (1810)
+.++|+|+++|++ +++ +.+|+|...... ...+....+.++++|+++.|+|+++.++|+||++
T Consensus 435 ~~v~v~Vl~vd~e---~~~~l~lS~k~~~~~~-------------~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l- 497 (647)
T PRK00087 435 QELEVKIIEFNRK---RRKKVVLSRKAILEEE-------------KEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI- 497 (647)
T ss_pred CEEEEEEEEEEcC---CCcEEEEEeHHHhhhh-------------hhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE-
Confidence 9999999999986 456 999998874000 0123345567789999999999999999999999
Q ss_pred CCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEE
Q 000236 1275 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1354 (1810)
Q Consensus 1275 ~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~i 1354 (1810)
++++|++|+++++|.++.+|.+.|++|+.|.++|+++|++++++.||+|+...+||.. ...++++|+++.|+|+++
T Consensus 498 ~gv~Gll~~sels~~~~~~~~~~~~vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~----~~~~~~~G~~v~g~V~~i 573 (647)
T PRK00087 498 GGVDGLLHVSEISWGRVEKPSDVLKVGDEIKVYILDIDKENKKLSLSLKKLLPDPWEN----VEEKYPVGSIVLGKVVRI 573 (647)
T ss_pred CCEEEEEEHHHcCccccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEeeccccChhhh----hhhhccCCeEEEEEEEEE
Confidence 6999999999999999999999999999999999999999999999999998888753 356789999999999999
Q ss_pred eeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecccc
Q 000236 1355 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1417 (1810)
Q Consensus 1355 ~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~~ 1417 (1810)
.+||+||+|.+ ++.||+|++++++.++.++.+.|++||.|+++|+++|++++||.||+|...
T Consensus 574 ~~~G~fV~l~~-~i~Gli~~sel~~~~~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~~ 635 (647)
T PRK00087 574 APFGAFVELEP-GVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVE 635 (647)
T ss_pred ECCeEEEEECC-CCEEEEEhhhcCccccCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeecc
Confidence 99999999986 899999999999999999999999999999999999999999999999853
No 18
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=8.4e-37 Score=396.59 Aligned_cols=332 Identities=23% Similarity=0.283 Sum_probs=292.3
Q ss_pred ccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE--eCCeEEEEEcc
Q 000236 365 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 442 (1810)
Q Consensus 365 ~~~~~~l~~G~~v~g~V~~v~~~G~~V~~~~~v~g~vp~~~ls~~~~~~~~~~~~vG~~v~~rVl~v--~~~~i~ls~k~ 442 (1810)
....+.+++|++|+|+|.++++.|++|+++++.+|++|..|+++....+|.+.|++|+.|+|+|+.+ ..+++.||+|+
T Consensus 294 ~~~~~~l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~ 373 (647)
T PRK00087 294 NELEKQIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDEISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKE 373 (647)
T ss_pred HHHHhhccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccccCChhhccCCCCEEEEEEEEEECCCCcEEEEeeh
Confidence 3467789999999999999999999999998999999999999988889999999999999999999 46799999998
Q ss_pred hhhcchhhHHhhhhh-cCCCcEEEEEEEEEeeceEEEEEcCCeEEEeeccccCCCCCCCCCcCccCCCEEEEEEEEEeCC
Q 000236 443 TLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 521 (1810)
Q Consensus 443 ~l~~~~~~~~~~~~~-~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~ 521 (1810)
..... .|..+.+ +++|+++.|+|+++.++|+||+++ +++||+|.+++++....++.. + +|++++|+|+++|++
T Consensus 374 ~~~~~---~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~lg-gi~gfiP~sel~~~~~~d~~~-~-vG~~v~v~Vl~vd~e 447 (647)
T PRK00087 374 ADREK---AWKELEEAFENGEPVKGKVKEVVKGGLLVDYG-GVRAFLPASHVELGYVEDLSE-Y-KGQELEVKIIEFNRK 447 (647)
T ss_pred hcchh---HHHHHHHHhhCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHhCccccCCHHH-h-CCCEEEEEEEEEEcC
Confidence 75442 3444433 478999999999999999999995 699999999999876666654 3 999999999999999
Q ss_pred CCe-EEEEEeeCCC-----C-ccccccccCCCeEEEEEEEEecCcEEEEEEecCceeEEEecccccCccccccccccccc
Q 000236 522 SRR-INLSFMMKPT-----R-VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 594 (1810)
Q Consensus 522 ~~~-l~lS~k~~~~-----~-~~~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k 594 (1810)
+++ +.+|++.... + ....+.+++|+++.|+|.++.++|++|.+ ++++|++|.++++|.... ...+.|+
T Consensus 448 ~~~~l~lS~k~~~~~~~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l---~gv~Gll~~sels~~~~~--~~~~~~~ 522 (647)
T PRK00087 448 RRKKVVLSRKAILEEEKEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI---GGVDGLLHVSEISWGRVE--KPSDVLK 522 (647)
T ss_pred CCcEEEEEeHHHhhhhhhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE---CCEEEEEEHHHcCccccC--CHHHhcC
Confidence 998 9999986421 1 11234578999999999999999999999 579999999999986532 2356799
Q ss_pred CCCeEe-eEEEeecCCCeEEEeccchhcchhccCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCccc
Q 000236 595 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 673 (1810)
Q Consensus 595 ~G~~i~-~vl~id~~~~~v~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~ 673 (1810)
+||.++ +++.+|++++++.||+|+.+.++|..+. +++++|+++.|+|++++++|+||++.+++.||+|.+++++.+
T Consensus 523 vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~~~---~~~~~G~~v~g~V~~i~~~G~fV~l~~~i~Gli~~sel~~~~ 599 (647)
T PRK00087 523 VGDEIKVYILDIDKENKKLSLSLKKLLPDPWENVE---EKYPVGSIVLGKVVRIAPFGAFVELEPGVDGLVHISQISWKR 599 (647)
T ss_pred CCCEEEEEEEEEECCCCEEEEEeeccccChhhhhh---hhccCCeEEEEEEEEEECCeEEEEECCCCEEEEEhhhcCccc
Confidence 999999 8999999999999999999999988653 457899999999999999999999999999999999999999
Q ss_pred ccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 674 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 674 ~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
+.++.+.|++||.|+|+|+++|++++|+.||+|....
T Consensus 600 ~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~~~ 636 (647)
T PRK00087 600 IDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVEE 636 (647)
T ss_pred cCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 9999999999999999999999999999999997654
No 19
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=8.8e-32 Score=317.51 Aligned_cols=240 Identities=23% Similarity=0.386 Sum_probs=212.5
Q ss_pred ccCCCEEEEEEEEEeeCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCC
Q 000236 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1211 (1810)
Q Consensus 1132 l~~G~~v~g~V~~i~~~~~g~~V~l~~~~~G~i~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~g 1211 (1810)
+++|+++.|+|+++.++ |++|+++.+.+|++|++|+++.+..+ |.+.|++|+.++|+|++++.+
T Consensus 29 ~~~G~iv~G~V~~i~~~--g~~Vdig~k~~g~lp~sEis~~~~~~-----------~~~~~~~G~~v~~~Vi~~~~~--- 92 (318)
T PRK07400 29 FKPGDIVNGTVFSLEPR--GALIDIGAKTAAFMPIQEMSINRVEG-----------PEEVLQPNETREFFILSDENE--- 92 (318)
T ss_pred cCCCCEEEEEEEEEECC--EEEEEECCCeEEEEEHHHhccccccC-----------HHHccCCCCEEEEEEEEEeCC---
Confidence 66999999999999998 99999999999999999999988776 778899999999999998875
Q ss_pred cceEEEeecccccCCCCCCCCCCCCCCCCCcccccccccC-CCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcc
Q 000236 1212 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL-SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1290 (1810)
Q Consensus 1212 ~~~l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~ 1290 (1810)
++++.||+|+.. . ...|..+.++ +.|++|+|+|++++++|+||+++ |++||||++++||.+
T Consensus 93 ~~~i~lS~k~~~-----~------------~~~w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l~-Gv~gfip~s~ls~~~ 154 (318)
T PRK07400 93 DGQLTLSIRRIE-----Y------------MRAWERVRQLQKEDATVRSEVFATNRGGALVRIE-GLRGFIPGSHISTRK 154 (318)
T ss_pred CCeEEEehhhhh-----h------------hhHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCccC
Confidence 579999999874 1 0124444444 56999999999999999999996 999999999999864
Q ss_pred cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeE
Q 000236 1291 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1370 (1810)
Q Consensus 1291 ~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~g 1370 (1810)
.. +.+ +|+.+.|+|+++|++++++.||+|+..... .+.++++|+++.|+|+++.+||+||.+. ++.|
T Consensus 155 ~~---~~~-vG~~i~~kVl~id~~~~~i~lS~K~~~~~~-------~~~~~k~G~vv~G~V~~I~~~G~fV~i~--gv~G 221 (318)
T PRK07400 155 PK---EEL-VGEELPLKFLEVDEERNRLVLSHRRALVER-------KMNRLEVGEVVVGTVRGIKPYGAFIDIG--GVSG 221 (318)
T ss_pred Cc---ccc-CCCEEEEEEEEEEcccCEEEEEhhHhhhhh-------hhccCCCCCEEEEEEEEEECCeEEEEEC--CEEE
Confidence 33 333 999999999999999999999999766432 3678999999999999999999999995 7999
Q ss_pred EEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccccc
Q 000236 1371 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418 (1810)
Q Consensus 1371 l~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~~~ 1418 (1810)
|+|+|++++.++.++.+.|++||.|+++|+++|.++++|.||+|....
T Consensus 222 llhisels~~~~~~~~~~~~vGd~VkvkVl~iD~e~~rI~LS~K~l~~ 269 (318)
T PRK07400 222 LLHISEISHEHIETPHSVFNVNDEMKVMIIDLDAERGRISLSTKQLEP 269 (318)
T ss_pred EEEHHHcccccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEecccc
Confidence 999999999999999999999999999999999999999999998644
No 20
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=99.98 E-value=4.7e-31 Score=311.38 Aligned_cols=238 Identities=21% Similarity=0.286 Sum_probs=214.2
Q ss_pred cCCCcEEEEEEEEEeeceEEEEEcCCeEEEeeccccCCCCCCCCCcCccCCCEEEEEEEEEeCCCCeEEEEEeeCC--CC
Q 000236 458 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP--TR 535 (1810)
Q Consensus 458 ~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~--~~ 535 (1810)
+++|+++.|+|+++.++|+||+|+++..||+|.+++++..+.++.+.|++|++++|+|+++|++++++.||++... .+
T Consensus 29 ~~~G~iv~G~V~~i~~~g~~Vdig~k~~g~lp~sEis~~~~~~~~~~~~~G~~v~~~Vi~~~~~~~~i~lS~k~~~~~~~ 108 (318)
T PRK07400 29 FKPGDIVNGTVFSLEPRGALIDIGAKTAAFMPIQEMSINRVEGPEEVLQPNETREFFILSDENEDGQLTLSIRRIEYMRA 108 (318)
T ss_pred cCCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhccccccCHHHccCCCCEEEEEEEEEeCCCCeEEEehhhhhhhhH
Confidence 6899999999999999999999988899999999999988888999999999999999999999999999999753 23
Q ss_pred cccccc-ccCCCeEEEEEEEEecCcEEEEEEecCceeEEEecccccCcccccccccccccCCCeEe-eEEEeecCCCeEE
Q 000236 536 VSEDDL-VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLL 613 (1810)
Q Consensus 536 ~~~~~~-~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~i~-~vl~id~~~~~v~ 613 (1810)
|..... ...|++|+|+|+.+.++|++|.+ ++++||||.+||||... .+. .+|+.|+ +++.+|++++++.
T Consensus 109 w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l---~Gv~gfip~s~ls~~~~-----~~~-~vG~~i~~kVl~id~~~~~i~ 179 (318)
T PRK07400 109 WERVRQLQKEDATVRSEVFATNRGGALVRI---EGLRGFIPGSHISTRKP-----KEE-LVGEELPLKFLEVDEERNRLV 179 (318)
T ss_pred HHHHHHhccCCCEEEEEEEEEECCeEEEEE---CCEEEEEEHHHcCccCC-----ccc-cCCCEEEEEEEEEEcccCEEE
Confidence 444333 45799999999999999999999 58999999999998532 223 4999999 8999999999999
Q ss_pred EeccchhcchhccCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEE
Q 000236 614 LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 693 (1810)
Q Consensus 614 ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~ 693 (1810)
||+|+.+.+. .+.++++|+++.|+|+++++||+||++ +|+.||+|+++++|.++.++.+.|++||.|+|+|++
T Consensus 180 lS~K~~~~~~------~~~~~k~G~vv~G~V~~I~~~G~fV~i-~gv~Gllhisels~~~~~~~~~~~~vGd~VkvkVl~ 252 (318)
T PRK07400 180 LSHRRALVER------KMNRLEVGEVVVGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVFNVNDEMKVMIID 252 (318)
T ss_pred EEhhHhhhhh------hhccCCCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcccccccChhhccCCCCEEEEEEEE
Confidence 9999888643 356789999999999999999999999 689999999999999999999999999999999999
Q ss_pred eeCCCCeEEEeecccccC
Q 000236 694 VNSETGRITLSLKQSCCS 711 (1810)
Q Consensus 694 vd~~~~rl~lSlk~~~~~ 711 (1810)
+|.+++++.||+|+....
T Consensus 253 iD~e~~rI~LS~K~l~~~ 270 (318)
T PRK07400 253 LDAERGRISLSTKQLEPE 270 (318)
T ss_pred EeCCCCEEEEEEeccccC
Confidence 999999999999998753
No 21
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=9.1e-23 Score=232.95 Aligned_cols=259 Identities=27% Similarity=0.443 Sum_probs=220.1
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHH--------------------
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-------------------- 1600 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~-------------------- 1600 (1810)
.+.+.|+..|+|.+..+|+ ...|++|+.|.++.|...-||.+|++|+..+....+.|++
T Consensus 188 keieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~i 266 (677)
T KOG1915|consen 188 KEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFI 266 (677)
T ss_pred hHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477889999999988876 6789999999999999999999999988744432211110
Q ss_pred --------------------------------------------------------HHHHHHHHHHHHcCCCCHHHHHHH
Q 000236 1601 --------------------------------------------------------NIWVAYFNLENEYGNPPEEAVVKV 1624 (1810)
Q Consensus 1601 --------------------------------------------------------~lW~~yl~le~~~g~~~~e~a~~v 1624 (1810)
..|..|+.++...| +.+..+++
T Consensus 267 ykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g--~~~~Ire~ 344 (677)
T KOG1915|consen 267 YKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG--DKDRIRET 344 (677)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC--CHHHHHHH
Confidence 56999999988888 67999999
Q ss_pred HHHHHhcCCCH---HHH-------HHHHHHH-HHhCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHh-cHHHHH
Q 000236 1625 FQRALQYCDPK---KVH-------LALLGLY-ERTEQNKLADELLYKMIKKFKH----SCKVWLRRVQRLLKQ-QQEGVQ 1688 (1810)
Q Consensus 1625 ferAl~~~~~~---~i~-------~~l~~~~-~~~g~~~~A~~~~e~~lk~~~~----~~~~w~~~a~~~~~~-~~~~A~ 1688 (1810)
|+||+...|+- +.| +.|+-+. ....+.+.++++|+++++.-|+ ..++|+.||+|++++ +...|+
T Consensus 345 yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~AR 424 (677)
T KOG1915|consen 345 YERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGAR 424 (677)
T ss_pred HHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHH
Confidence 99999998873 444 4444433 3467888999999999998774 589999999999999 999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 000236 1689 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1768 (1810)
Q Consensus 1689 ~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~ 1768 (1810)
+++-.|+..+|+. +++..|+.++.+.+++|++|.+|++.|...|.+...|..|+.++..+||.++||++|+-|+++.
T Consensus 425 kiLG~AIG~cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 425 KILGNAIGKCPKD---KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHhccCCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 9999999999988 7999999999999999999999999999999999999999999999999999999999999942
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000236 1769 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806 (1810)
Q Consensus 1769 ~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~ 1806 (1810)
.- +-+..+|+.|++||...|.++.++++|+|-++--+
T Consensus 502 ~l-dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 502 AL-DMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred cc-ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 21 22337899999999999999999999999887543
No 22
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.3e-22 Score=228.41 Aligned_cols=256 Identities=23% Similarity=0.398 Sum_probs=206.1
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1620 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~ 1620 (1810)
.+...|++.|||+|..+..+..+|+.|+.+.+.+..+..||.+++||+...|--+ .+|..|+.++..+|| ..-
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-----qlWyKY~ymEE~LgN--i~g 159 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-----QLWYKYIYMEEMLGN--IAG 159 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-----HHHHHHHHHHHHhcc--cHH
Confidence 3477899999999999999999999999999999999999999999997777322 688888888888884 488
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCC
Q 000236 1621 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1699 (1810)
Q Consensus 1621 a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p 1699 (1810)
|+++|+|-+...|..+.|..++++..+....+.|+.+|++.+--. .....|+.||.|..++ +..-|+..|++|+..+.
T Consensus 160 aRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 160 ARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888888888888888877554 4667788888887777 77777777777776664
Q ss_pred CCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------------------------HHhC
Q 000236 1700 RHK-HIKFISQTAILEFKNGVADRGRSMFEGI--------------------------------------------LSEY 1734 (1810)
Q Consensus 1700 ~~~-~~~~~~~~a~l~~~~g~~e~Ar~lfe~a--------------------------------------------l~~~ 1734 (1810)
... ...++..||.|+.++..+++||.+|.-| ++.+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 421 1245666666666666666666666544 6777
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHH-------H-HHHcCCHHHHHHHHHHHHHHH
Q 000236 1735 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE-------Y-EKSVGEEERIEYVKQKAMEYV 1805 (1810)
Q Consensus 1735 P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~-------~-E~~~G~~~~a~~v~~rAl~~v 1805 (1810)
|-+.|.|..|..++...|+.++.|.+||||++ +.||..-+..|++|+. | |....|.+..+++|+.+++.+
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 88889999999999999999999999999999 7788777767776664 4 556789999999999999864
No 23
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=4.6e-20 Score=218.07 Aligned_cols=262 Identities=18% Similarity=0.242 Sum_probs=240.5
Q ss_pred HHHHHHHHHhccC-CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHH
Q 000236 1530 EIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1608 (1810)
Q Consensus 1530 ~~~~~e~~~~~~~-~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~ 1608 (1810)
.|-.+.+...... .+-+++.|..+|+..|..-.+|.+.+.+...-|..+...+++++|+..+|..+ .+|+.|..
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae-----~lwlM~ak 592 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE-----ILWLMYAK 592 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch-----hHHHHHHH
Confidence 4555555554433 77788999999999999999999999999999999999999999999999655 59999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHH
Q 000236 1609 LENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1686 (1810)
Q Consensus 1609 le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~ 1686 (1810)
.....| +.-.|+.++.+|.+.+|.. .+|++-..+...+.+++.|+.+|.++.... ....+|+.++.++.-+ ..++
T Consensus 593 e~w~ag--dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s-gTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAG--DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS-GTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcC--CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC-CcchhhHHHhHHHHHhhhHHH
Confidence 999999 6799999999999999986 999999999999999999999999998754 5788999999999999 9999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1687 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1687 A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
|++++++||+.+|... ++|+.++|++.++++.+.||..|...++.+|.+..+|..++.++.+.|.+-+||.+|+|+.-
T Consensus 670 A~rllEe~lk~fp~f~--Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFH--KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHhCCchH--HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9999999999999884 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000236 1767 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804 (1810)
Q Consensus 1767 ~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~ 1804 (1810)
.+|++. .||..-+.||.+.|+.+.|+.+..+|+|-
T Consensus 748 --kNPk~~-~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 748 --KNPKNA-LLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred --cCCCcc-hhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 677888 79999999999999999999999999974
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=1.4e-18 Score=205.74 Aligned_cols=253 Identities=23% Similarity=0.333 Sum_probs=226.8
Q ss_pred HhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCC
Q 000236 1538 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1617 (1810)
Q Consensus 1538 ~~~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~ 1617 (1810)
-..++.+.|+....+++..+|+|..+|+.-..++..+.++++||.+|.+|-...+ ++ .+|+.+++|+.-+++
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-Te-----Rv~mKs~~~er~ld~-- 666 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TE-----RVWMKSANLERYLDN-- 666 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cc-----hhhHHHhHHHHHhhh--
Confidence 3467899999999999999999999999999999999999999999999985433 33 489999999999994
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Q 000236 1618 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1695 (1810)
Q Consensus 1618 ~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ral 1695 (1810)
.++|+.++++|++..|.. ++|+.++++|++.++.+.|++.|...++.+|.+..+|+.++.+..+. +.-+||.+|+|+.
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 599999999999999985 99999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------------------
Q 000236 1696 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR------------------------- 1750 (1810)
Q Consensus 1696 k~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k------------------------- 1750 (1810)
..+|++. .+|+...+++++.|..+.|+.++-+||+.+|++..+|..-+.++-+
T Consensus 747 lkNPk~~--~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia 824 (913)
T KOG0495|consen 747 LKNPKNA--LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIA 824 (913)
T ss_pred hcCCCcc--hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHH
Confidence 9999984 8999999999999999999999999999999999999887776532
Q ss_pred -----cCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1751 -----LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1751 -----~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
...++.||.-|+||+. ..|+.- +.|--+..||..+|+.+....++.++..
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk--~d~d~G-D~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVK--KDPDNG-DAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--cCCccc-hHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 1456889999999998 677776 7999999999999999999999988753
No 25
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.77 E-value=4.2e-17 Score=193.44 Aligned_cols=265 Identities=20% Similarity=0.334 Sum_probs=218.0
Q ss_pred ccCCCCcHHHHHHHHHcC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccch------hh--------HHH
Q 000236 1540 EKDAPRTPDEFERLVRSS-PN---SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE------NE--------KLN 1601 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~-P~---~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e------~e--------~~~ 1601 (1810)
.++...|+..|++++..+ |. -...|..++..++...+++.|+.+.++|. ..|.+.. .+ .+.
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 345888999999997654 22 37889999999999999999999999998 4554422 11 248
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Q 000236 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQR 1678 (1810)
Q Consensus 1602 lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~--~~~~~~w~~~a~~ 1678 (1810)
+|..|++++..+| +.++.+.+|+|.+.+.-. ..+-..|+.+++.+.-++++.++|++.+..| |...++|..|..-
T Consensus 479 iWs~y~DleEs~g--tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 479 IWSMYADLEESLG--TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 9999999999999 679999999999987654 4888999999999999999999999999876 6889999999976
Q ss_pred HHHh----cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-----------------------------------
Q 000236 1679 LLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV----------------------------------- 1719 (1810)
Q Consensus 1679 ~~~~----~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~----------------------------------- 1719 (1810)
..++ +.++||.+|++||+.+|....-.+|+.||+++.+.|-
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 6665 8999999999999999965444789999999988775
Q ss_pred -HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000236 1720 -ADRGRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1796 (1810)
Q Consensus 1720 -~e~Ar~lfe~al~~~P~~--~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~ 1796 (1810)
+.+.|.+|++|++..|+. .+....|+++|.+.|.+++||.+|..+-+ -++|+..-.+|..|=+||.+|||.+..++
T Consensus 637 Gv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq-~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 637 GVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ-ICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred CCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh-cCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 345566777778888875 45789999999999999999999999887 56677666899999999999999887776
Q ss_pred HHHHHHHHHHhhh
Q 000236 1797 VKQKAMEYVESTL 1809 (1810)
Q Consensus 1797 v~~rAl~~v~~~~ 1809 (1810)
++ |....|++.+
T Consensus 716 ML-RikRsvqa~y 727 (835)
T KOG2047|consen 716 ML-RIKRSVQATY 727 (835)
T ss_pred HH-HHHHHHHHhh
Confidence 55 4555555543
No 26
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.73 E-value=8.8e-16 Score=182.41 Aligned_cols=262 Identities=18% Similarity=0.267 Sum_probs=203.9
Q ss_pred HhccCCCCcHHHHHHHHHc-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHH
Q 000236 1538 LLEKDAPRTPDEFERLVRS-SPN-----SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN 1611 (1810)
Q Consensus 1538 ~~~~~~~~a~~~fer~l~~-~P~-----~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~ 1611 (1810)
+..++..+....|.++++. +|. -..+|..|+.+|...++++.||.+|++|+ .+|+..-.+-.++|.+|+.+++
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~-~V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT-KVPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh-cCCccchHHHHHHHHHHHHHHH
Confidence 3345566777788888753 553 36899999999999999999999999999 5677655555689999999999
Q ss_pred HcCCCCHHHHHHHHHHHHhcCC-------------------CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHH
Q 000236 1612 EYGNPPEEAVVKVFQRALQYCD-------------------PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1672 (1810)
Q Consensus 1612 ~~g~~~~e~a~~vferAl~~~~-------------------~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w 1672 (1810)
... +.+.|..+.++|+..-- +..+|..|+++.+..|.++..+.+|++++..--..+.+-
T Consensus 437 rh~--~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 437 RHE--NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred hhh--hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 999 45999999999985431 128999999999999999999999999998777899999
Q ss_pred HHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHH-HHHHcC--CHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Q 000236 1673 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI-LEFKNG--VADRGRSMFEGILSEYPKR--TDLWSIYLD 1746 (1810)
Q Consensus 1673 ~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~-l~~~~g--~~e~Ar~lfe~al~~~P~~--~~lw~~ya~ 1746 (1810)
.+||.|+.++ .++++.+.|+|-+.+++......+|..|.. |..+.| .+++||.+||+||..+|.. ..++..|+.
T Consensus 515 ~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 515 INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999 999999999999999987766689999886 444555 7999999999999988842 348999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHH
Q 000236 1747 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY-EKSVGEEERIEYVKQKAMEY 1804 (1810)
Q Consensus 1747 ~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~-E~~~G~~~~a~~v~~rAl~~ 1804 (1810)
+|.+.|-..+|.++|+||.. ..++.++-++|+.|+.- +.-+|-. .-+.+|++|++.
T Consensus 595 lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~-~TR~iYekaIe~ 651 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVP-RTREIYEKAIES 651 (835)
T ss_pred HHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCc-ccHHHHHHHHHh
Confidence 99998888777777777776 34444444555555542 2223322 234455555544
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.70 E-value=6.2e-16 Score=182.15 Aligned_cols=179 Identities=16% Similarity=0.105 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Q 000236 1619 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1696 (1810)
Q Consensus 1619 e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk 1696 (1810)
+-|...|+||+...|.. ..|..+++.+...|+..+|.+.|.+++...++.++..++++.++.++ +++.|..+|..|+.
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 44444444444444432 44444444444444444444444444444444444444444444444 44444444444444
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 000236 1697 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1776 (1810)
Q Consensus 1697 ~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~ 1776 (1810)
.+|... .+..++|.++.++|++++|...|..+++..|...+.++.....+...|+.+.|.+.|.||+. +.|.-+ +
T Consensus 383 v~p~~a--aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~A-e 457 (966)
T KOG4626|consen 383 VFPEFA--AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFA-E 457 (966)
T ss_pred hChhhh--hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHH-H
Confidence 444431 34444444444444444444444444444444444444444444444444444444444444 333333 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000236 1777 LFKKYLEYEKSVGEEERIEYVKQKAM 1802 (1810)
Q Consensus 1777 lw~~yl~~E~~~G~~~~a~~v~~rAl 1802 (1810)
.+.....+.+..|+..+|..-|+.|+
T Consensus 458 AhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 458 AHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 33444444444444444444444444
No 28
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.69 E-value=1e-15 Score=180.46 Aligned_cols=252 Identities=13% Similarity=0.113 Sum_probs=193.5
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1620 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~ 1620 (1810)
+...++.+.|.+++..+|.-+.+|..++-.+..+|++-.|...|++|++..|.. +..++.+.+.+...+ ..+.
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-----~dAYiNLGnV~ke~~--~~d~ 270 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-----LDAYINLGNVYKEAR--IFDR 270 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-----hHHHhhHHHHHHHHh--cchH
Confidence 446777778888888888888888888888888888888888888888665532 235666666666666 3477
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhC
Q 000236 1621 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1698 (1810)
Q Consensus 1621 a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~ 1698 (1810)
|...|.||+...|.. .+|-.++-+|...|..+-|...|++++...|+.+.++.++|..+.+. +..+|.++|.+||..+
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 888888888887775 67777777888888888888888888888888888888888888877 8888888888888887
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 000236 1699 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1778 (1810)
Q Consensus 1699 p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw 1778 (1810)
|.+ .+.+.++|..+.++|.++.|..+|+.++..+|......+.++.++.++|++++|...|..|++ +.|.-+ +.+
T Consensus 351 p~h--adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA-da~ 425 (966)
T KOG4626|consen 351 PNH--ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA-DAL 425 (966)
T ss_pred Ccc--HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH-HHH
Confidence 766 477888888888888888888888888888888888888888888888888888888888887 666555 455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000236 1779 KKYLEYEKSVGEEERIEYVKQKAMEY 1804 (1810)
Q Consensus 1779 ~~yl~~E~~~G~~~~a~~v~~rAl~~ 1804 (1810)
.....-.++.|+...|.+.|.||++.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 55556677778888888888888764
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.67 E-value=1.3e-14 Score=192.32 Aligned_cols=253 Identities=11% Similarity=0.037 Sum_probs=210.5
Q ss_pred CCCCcHHHHHHHHHc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCH
Q 000236 1542 DAPRTPDEFERLVRS---SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1618 (1810)
Q Consensus 1542 ~~~~a~~~fer~l~~---~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~ 1618 (1810)
...+|...|++++.. .|+....|..++.++...|++++|...|++++...|.. ...|+.+..++...+ +.
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~-----~~~~~~la~~~~~~g--~~ 381 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV-----TQSYIKRASMNLELG--DP 381 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCC--CH
Confidence 355677888888865 47788889999999999999999999999999765532 357888888888888 55
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Q 000236 1619 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1696 (1810)
Q Consensus 1619 e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk 1696 (1810)
++|...|++|++..|.. .+|..++.++...|++++|...|++++...|++...|..++..+.++ ++++|...|+++++
T Consensus 382 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999998875 89999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HH-HHHHHHHcCChHHHHHHHHHHHhcCC
Q 000236 1697 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW------SI-YLDQEIRLGDVDLIRGLFERAISLSL 1769 (1810)
Q Consensus 1697 ~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw------~~-ya~~e~k~gd~e~ar~lferal~~~~ 1769 (1810)
.+|.. ..+|..++.++...|++++|+..|++++...|+....| .. ...++...|++++|+.+|++++. .
T Consensus 462 ~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l 537 (615)
T TIGR00990 462 NFPEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--I 537 (615)
T ss_pred hCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--c
Confidence 98877 47889999999999999999999999999888753322 22 22233346899999999999998 5
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000236 1770 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806 (1810)
Q Consensus 1770 ~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~ 1806 (1810)
.|... ..|..+.......|+.++|...|++|++...
T Consensus 538 ~p~~~-~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 538 DPECD-IAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CCCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 66666 5777788888889999999999999987654
No 30
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.66 E-value=2.6e-14 Score=188.77 Aligned_cols=251 Identities=10% Similarity=0.014 Sum_probs=195.1
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1620 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~ 1620 (1810)
++.++|...|++++..+|++...|..++..+...|++++|...|++++...|... ..|...+. +...| +.++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-----~a~~~~~~-l~~~g--~~~e 195 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-----DMIATCLS-FLNKS--RLPE 195 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHH-HHHcC--CHHH
Confidence 3456666666666666666666666666666666666666666666665544322 12322222 34556 4477
Q ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHH----HHHHHHH
Q 000236 1621 VVKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG----VQAVVQR 1693 (1810)
Q Consensus 1621 a~~vferAl~~~~~--~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~----A~~ll~r 1693 (1810)
|...++++++..|. ...+..++..+.+.|++++|...|++++...|++..+|+.++..+.+. ++++ |...|++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 77777777776543 244445567788899999999999999999999999999999999999 8775 8999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 000236 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1773 (1810)
Q Consensus 1694 alk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~ 1773 (1810)
+++..|.+ ..++..+|.++.+.|++++|...|++++...|.+..+|..++.++.+.|+++.|...|++++. ..|..
T Consensus 276 Al~l~P~~--~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~ 351 (656)
T PRK15174 276 ALQFNSDN--VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVT 351 (656)
T ss_pred HHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccc
Confidence 99999986 589999999999999999999999999999999999999999999999999999999999998 56665
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000236 1774 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804 (1810)
Q Consensus 1774 ~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~ 1804 (1810)
. ..+..........|+.++|...|++|++.
T Consensus 352 ~-~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 S-KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred h-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5 34444455667899999999999998865
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.66 E-value=3e-14 Score=188.85 Aligned_cols=194 Identities=14% Similarity=0.115 Sum_probs=111.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 000236 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1682 (1810)
Q Consensus 1604 ~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~ 1682 (1810)
..+..++...| +.+.|...|++|++..|.. ..|+.++.++...|++++|...|++++...|.++.+|+.++.++...
T Consensus 335 ~~lg~~~~~~g--~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 335 NLRGTFKCLKG--KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33333444445 3356666666666665553 55666666666666666666666666666666666666666666666
Q ss_pred -cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 000236 1683 -QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1761 (1810)
Q Consensus 1683 -~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lf 1761 (1810)
++++|...|+++++..|.+ ...|..+|.+++++|++++|...|++++..+|++..+|..++.++...|++++|+..|
T Consensus 413 g~~~~A~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLDPDF--IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred CCHHHHHHHHHHHHHcCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 6666666666666666554 3556666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCCchh------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1762 ERAISLSLPPKK------MKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1762 eral~~~~~p~~------~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
++++. +.|.. ...+|...+.+....|++++|..++++|++
T Consensus 491 ~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 491 DTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66665 22221 001222222222334566666666666543
No 32
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=99.66 E-value=1.1e-14 Score=158.54 Aligned_cols=231 Identities=17% Similarity=0.153 Sum_probs=183.3
Q ss_pred cCCCcEEEEEEEEEeeceEEEEEcCCe-EEEeeccccCCCCCCCCCcCccCCCEEEEEEEEEeCCCCeEEEEEeeCCCCc
Q 000236 458 ATDRLITHGWITKIEKHGCFVRFYNGV-QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 536 (1810)
Q Consensus 458 ~~~g~~~~g~V~~i~~~G~~V~~~~~v-~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~~~~ 536 (1810)
..+|++....|.+..++|+|++=.++- .-++|.++.... ...+|++|++-|. .|. ++|+.++.+.
T Consensus 3 ~~iG~~~~l~V~~~~~~g~fL~~~~~~~~ilL~k~~~~~~-------e~evGdev~vFiY-~D~-~~rl~aTt~~----- 68 (287)
T COG2996 3 IKIGQINSLEVVEFSDFGYFLDAGEDGTTILLPKSEPEED-------ELEVGDEVTVFIY-VDS-EDRLIATTRE----- 68 (287)
T ss_pred ccccceEEEEEEEeeceeEEEecCCCceEEeccccCCcCC-------ccccCcEEEEEEE-ECC-CCceeheeec-----
Confidence 357999999999999999999854332 678888866422 4779999999665 676 5777888754
Q ss_pred cccccccCCCeEEEEEEEEe-cCcEEEEEEecCceeEEEecccccCcccccccccccccCCCeEeeEEEeecCCCeEEEe
Q 000236 537 SEDDLVKLGSLVSGVVDVVT-PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 615 (1810)
Q Consensus 537 ~~~~~~~~G~iv~g~V~~v~-~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~i~~vl~id~~~~~v~ls 615 (1810)
+.+++|+.-.++|+++. ..|+||.. +=.-+-+||.++++..+ .-|+++||++-.-|.+|+.+ |+ +
T Consensus 69 ---p~~tvg~~g~~~Vv~v~~~lGaFlD~--Gl~KDl~vp~~elp~~~------~~wpq~Gd~l~v~l~~Dkk~-Ri--~ 134 (287)
T COG2996 69 ---PKATVGEYGWLKVVEVNKDLGAFLDW--GLPKDLLVPLDELPTLK------SLWPQKGDKLLVYLYVDKKG-RI--W 134 (287)
T ss_pred ---ceEeecceeEEEEEEEcCCcceEEec--CCCcceeeehhhccccc------ccCCCCCCEEEEEEEEccCC-cE--E
Confidence 67889999999999998 78999998 44689999999997533 33799999999888899877 33 3
Q ss_pred ccchhcchhccCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEee
Q 000236 616 AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 695 (1810)
Q Consensus 616 ~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd 695 (1810)
.+....+..+.++..+.+=-.|+.+.|+|+++...|.||-..++..||+|+||.-.+ ++.||.+.+||+.+.
T Consensus 135 g~~a~~~~l~~l~~~~~~~l~nq~v~~tVYr~~~~G~fv~~e~~~~GfIh~sEr~~~--------prlG~~l~~rVi~~r 206 (287)
T COG2996 135 GTLAIEKILENLATPAYNNLKNQEVDATVYRLLESGTFVITENGYLGFIHKSERFAE--------PRLGERLTARVIGVR 206 (287)
T ss_pred EEecchhHHHhcCCccchhhhcCeeeeEEEEEeccceEEEEcCCeEEEEcchhhccc--------ccCCceEEEEEEEEc
Confidence 333444444444433322235999999999999999999999999999999987543 689999999999998
Q ss_pred CCCCeEEEeecccccCC--CChhhHHHHHHHH
Q 000236 696 SETGRITLSLKQSCCSS--TDASFMQEHFLLE 725 (1810)
Q Consensus 696 ~~~~rl~lSlk~~~~~~--~~~~~~~~~~~~~ 725 (1810)
. ++++.||+++..... .|+..|..||...
T Consensus 207 e-Dg~lnLSl~p~~~E~l~~daq~Il~yL~~~ 237 (287)
T COG2996 207 E-DGKLNLSLRPRAHEMLDEDAQMILTYLESN 237 (287)
T ss_pred c-CCeeecccccccHHhhhhhHHHHHHHHHHc
Confidence 6 999999999886543 7788888888754
No 33
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.66 E-value=5.6e-14 Score=185.71 Aligned_cols=251 Identities=11% Similarity=0.074 Sum_probs=193.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e 1619 (1810)
.++.++|...|++++..+|+++..|..++..+.+.|++++|...|++++...|.. ...|..++.++...| +.+
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~-----~~a~~~la~~l~~~g--~~~ 161 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN-----SQIFALHLRTLVLMD--KEL 161 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHCC--ChH
Confidence 3446667777777777777777777777777777777777777777777654432 246777777777777 347
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Q 000236 1620 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1696 (1810)
Q Consensus 1620 ~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~-~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk 1696 (1810)
.|...|++++...|.. ..|..+ ..+.+.|++++|...|++++..++ .....+..++..+.+. ++++|...|++++.
T Consensus 162 eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 162 QAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777777777766654 444333 335667777777777777777654 3333444556677777 88899999999998
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 000236 1697 SLPRHKHIKFISQTAILEFKNGVADR----GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1772 (1810)
Q Consensus 1697 ~~p~~~~~~~~~~~a~l~~~~g~~e~----Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~ 1772 (1810)
..|.+ ..++..+|.++...|++++ |...|+++++.+|++..+|..++.++...|++++|...|++++. ..|.
T Consensus 241 ~~p~~--~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~ 316 (656)
T PRK15174 241 RGLDG--AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPD 316 (656)
T ss_pred cCCCC--HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCC
Confidence 88876 5888999999999999885 89999999999999999999999999999999999999999998 6777
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1773 KMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1773 ~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
.. ..|..+.......|++++|...|+++++
T Consensus 317 ~~-~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 317 LP-YVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77 5788888888889999999999998875
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.65 E-value=7.6e-14 Score=175.28 Aligned_cols=257 Identities=14% Similarity=0.148 Sum_probs=217.3
Q ss_pred hccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCH
Q 000236 1539 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1618 (1810)
Q Consensus 1539 ~~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~ 1618 (1810)
..++..+|...|++++..+|++...|..++.++...|++++|..++++++.. +......+...|..++..+...| +.
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g--~~ 123 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAG--LL 123 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCC--CH
Confidence 3456788999999999999999999999999999999999999999999864 32222234467888888988999 55
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHh-cHHHHHHHH
Q 000236 1619 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQ-QQEGVQAVV 1691 (1810)
Q Consensus 1619 e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~-----~~~w~~~a~~~~~~-~~~~A~~ll 1691 (1810)
+.|..+|+++++..+.. ..|..++.++.+.|++++|.+.|+++++..+.. ...|..++..+.++ ++++|...|
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999887664 788899999999999999999999999877644 23566788888888 999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 000236 1692 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1770 (1810)
Q Consensus 1692 ~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~-~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~ 1770 (1810)
+++++..|.. ...+..+|.++.+.|++++|..+|++++...|.. ..+|..++..+...|+.+.|...|++++. ..
T Consensus 204 ~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~ 279 (389)
T PRK11788 204 KKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--EY 279 (389)
T ss_pred HHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 9999988876 4788899999999999999999999999888876 45788888999999999999999999998 45
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000236 1771 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804 (1810)
Q Consensus 1771 p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~ 1804 (1810)
|+.. .+..++.+..+.|+.++|..+++++++.
T Consensus 280 p~~~--~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 280 PGAD--LLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred CCch--HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5543 4467777888899999999999988764
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=2.2e-15 Score=179.78 Aligned_cols=256 Identities=19% Similarity=0.266 Sum_probs=121.4
Q ss_pred HhccCCCCcHHHHHHHHHc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCC
Q 000236 1538 LLEKDAPRTPDEFERLVRS--SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1615 (1810)
Q Consensus 1538 ~~~~~~~~a~~~fer~l~~--~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~ 1615 (1810)
...++.++|.+.+.+.+.. .|++...|..++......++++.|+.+|++++...+.+ ......++.+ ...+
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~-----~~~~~~l~~l-~~~~- 91 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN-----PQDYERLIQL-LQDG- 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccc-cccc-
Confidence 3356688899999776554 48999999999999999999999999999999754432 2345666666 5667
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHh-cHHHHHHHHH
Q 000236 1616 PPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQ 1692 (1810)
Q Consensus 1616 ~~~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~--~~~~~~w~~~a~~~~~~-~~~~A~~ll~ 1692 (1810)
+.++|.++++++.+..+....|..++.++.+.++++++.++++++.... +.++.+|..++.++.+. +.++|.++|+
T Consensus 92 -~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 92 -DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4589999999998877767888899999999999999999999977643 68899999999999999 9999999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 000236 1693 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1772 (1810)
Q Consensus 1693 ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~ 1772 (1810)
+|++..|.+ ..++..++.++...|+.++++.+++...+..|+++.+|..|+..+...|+.+.|...|++++. ..|+
T Consensus 171 ~al~~~P~~--~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~ 246 (280)
T PF13429_consen 171 KALELDPDD--PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPD 246 (280)
T ss_dssp HHHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHcCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cccc
Confidence 999999998 488999999999999999999999999999999999999999999999999999999999998 7777
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000236 1773 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806 (1810)
Q Consensus 1773 ~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~ 1806 (1810)
++ .+...|.+.....|..++|..++.+|++.+.
T Consensus 247 d~-~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 247 DP-LWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp -H-HHHHHHHHHHT--------------------
T ss_pred cc-ccccccccccccccccccccccccccccccC
Confidence 77 6888999999999999999999999998764
No 36
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=99.58 E-value=2.9e-16 Score=180.59 Aligned_cols=148 Identities=17% Similarity=0.256 Sum_probs=128.8
Q ss_pred ccCC-CCCEEEEEEEEEeeceEEEEeC--CCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000236 1249 EDLS-PNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325 (1810)
Q Consensus 1249 ~~l~-~G~~v~G~V~~v~~~G~fV~l~--~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~ 1325 (1810)
.+++ +|++|.|+|++|.++|+||+|. ++++|+||+|+|||.++.++.+.+++||.|.|+|+++|+++++|.||+|..
T Consensus 12 ~~~P~~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~v 91 (319)
T PTZ00248 12 QKFPEEDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKRV 91 (319)
T ss_pred hhCCCCCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeeec
Confidence 4576 8999999999999999999996 589999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCCCcEEEEEEEEEee-ceEEEE------EeCCceeEEEeccccCcccccCcccccC---CCCEE
Q 000236 1326 DSRTASQSEINNLSNLHVGDIVIGQIKRVES-YGLFIT------IENTNLVGLCHVSELSEDHVDNIETIYR---AGEKV 1395 (1810)
Q Consensus 1326 ~~~~~~~~~~~~~~~~~~G~~v~G~V~~i~~-~G~fV~------l~~~~v~gl~~~sel~~~~~~~~~~~~~---~G~~V 1395 (1810)
..+||... ...++.|+++.|.|+++.+ +|+|++ .-+ ...++.|.++.+...+.++.+.|. +++.+
T Consensus 92 ~~~pw~~~----~e~~~~g~~v~~~V~~ia~~~g~~~eely~~i~~p-l~~~~gh~y~af~~~v~~~~evl~~l~i~~ev 166 (319)
T PTZ00248 92 SPEDIEAC----EEKFSKSKKVHSIMRHIAQKHGMSVEELYTKIIWP-LYKKYGHALDALKEALTNPDNVFEGLDIPEEV 166 (319)
T ss_pred ccchHHHH----HHhCcCCCEEEEEEEEchhhcCCCHHHHHHHHHHH-HHHhcCCHHHHHHHHhcCchhhhccCCCCHHH
Confidence 99887653 5689999999999999965 999998 444 788999999998887777766666 66655
Q ss_pred EEEEEE
Q 000236 1396 KVKILK 1401 (1810)
Q Consensus 1396 ~~~I~~ 1401 (1810)
+.+++.
T Consensus 167 ~~~l~~ 172 (319)
T PTZ00248 167 KESLLQ 172 (319)
T ss_pred HHHHHH
Confidence 554443
No 37
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.58 E-value=3.4e-13 Score=188.22 Aligned_cols=249 Identities=13% Similarity=0.092 Sum_probs=202.9
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1620 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~ 1620 (1810)
++.++|...|++++..+|++...|..++..+...|++++|..+++++....|.. ...|..++..+...| +.+.
T Consensus 649 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g--~~~~ 721 (899)
T TIGR02917 649 KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA-----ALGFELEGDLYLRQK--DYPA 721 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-----hHHHHHHHHHHHHCC--CHHH
Confidence 345666666666666666666667666666666677777777666666554432 245666777777778 4588
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCC
Q 000236 1621 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1699 (1810)
Q Consensus 1621 a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p 1699 (1810)
|.+.|+++++..|....+..++.++.+.|++++|.+.++++++..|.+..+++.++.++... ++++|.++|+++++..|
T Consensus 722 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 722 AIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 89999999888888788888888999999999999999999999999999999999999988 99999999999999888
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 000236 1700 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1779 (1810)
Q Consensus 1700 ~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~ 1779 (1810)
.+ ..++..++.++...|+ ++|+.+|++++...|++..+|..++.++...|++++|..+|++++. ..|.+. .++.
T Consensus 802 ~~--~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~~~-~~~~ 875 (899)
T TIGR02917 802 DN--AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN--IAPEAA-AIRY 875 (899)
T ss_pred CC--HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCh-HHHH
Confidence 76 5788888999888888 7899999999999999999999999999999999999999999998 555555 5888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 000236 1780 KYLEYEKSVGEEERIEYVKQKAM 1802 (1810)
Q Consensus 1780 ~yl~~E~~~G~~~~a~~v~~rAl 1802 (1810)
.+.....+.|+.++|+.++++++
T Consensus 876 ~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 876 HLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888999999999998876
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.57 E-value=5.8e-13 Score=188.03 Aligned_cols=258 Identities=10% Similarity=0.076 Sum_probs=193.5
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhH--------------------
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-------------------- 1599 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~-------------------- 1599 (1810)
.++.++|...|++++..+|++..+|..++..+...|++++|++.|+++++..|.....-+
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999999987664321000
Q ss_pred -----------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHH
Q 000236 1600 -----------------LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKM 1661 (1810)
Q Consensus 1600 -----------------~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~ 1661 (1810)
...|......+...+ +.++|.+.|++|++..|.. .+|..++.+|.+.|++++|...|+++
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g--~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQG--KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 001112223344556 5599999999999999875 88899999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHH----------------------------------------HHhCCC
Q 000236 1662 IKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA----------------------------------------LLSLPR 1700 (1810)
Q Consensus 1662 lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ra----------------------------------------lk~~p~ 1700 (1810)
++..|.++..++.++.++.+. +.++|...|+++ +...|.
T Consensus 522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~ 601 (1157)
T PRK11447 522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP 601 (1157)
T ss_pred HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 998888888888777766655 666665555432 112333
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000236 1701 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1780 (1810)
Q Consensus 1701 ~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~ 1780 (1810)
+ ..++..+|.++.+.|++++|+..|+++++..|++.++|..++.++...|++++|+..|++++. ..|... ..+..
T Consensus 602 ~--~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~-~~~~~ 676 (1157)
T PRK11447 602 S--TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSL-NTQRR 676 (1157)
T ss_pred C--chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCCh-HHHHH
Confidence 3 356677777777778888888888888877787777777777777777777777777777776 455555 45555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 000236 1781 YLEYEKSVGEEERIEYVKQKAMEY 1804 (1810)
Q Consensus 1781 yl~~E~~~G~~~~a~~v~~rAl~~ 1804 (1810)
+.......|+.++|..+|+++++.
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhh
Confidence 566666677777777777777664
No 39
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.57 E-value=1.9e-14 Score=169.96 Aligned_cols=135 Identities=33% Similarity=0.551 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000236 1670 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1747 (1810)
Q Consensus 1670 ~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~-~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~ 1747 (1810)
-+|+.|+.|..+. ..+.||.+|++|++..+.+ ..+|..+|.+|+. .++.+.|+.+||++++.+|.+.++|..|+++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~--~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCT--YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4899999999999 9999999999999554333 4899999999999 4678889999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000236 1748 EIRLGDVDLIRGLFERAISLSLPPKK-MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807 (1810)
Q Consensus 1748 e~k~gd~e~ar~lferal~~~~~p~~-~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~~ 1807 (1810)
+.+.++.+.||.+|||++. .++++. ++.+|.+|++||.++|+.+.+..+++|+.+++..
T Consensus 80 l~~~~d~~~aR~lfer~i~-~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS-SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC-TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999 577777 7889999999999999999999999999998753
No 40
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.57 E-value=5.5e-13 Score=186.07 Aligned_cols=251 Identities=15% Similarity=0.068 Sum_probs=171.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1620 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~ 1620 (1810)
++..+|...|++++..+|++...|..++..+...|++++|...|++++...|.. ...|..++.++...+ +.++
T Consensus 479 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~ 551 (899)
T TIGR02917 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN-----LRAILALAGLYLRTG--NEEE 551 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHcC--CHHH
Confidence 346666777777777777777777777777777777777777777777655432 245666666666666 4477
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhC
Q 000236 1621 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1698 (1810)
Q Consensus 1621 a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~ 1698 (1810)
|...|+++++..|.. ..|..++.+|...|++++|...|++++..++.+..+|..++..+... ++++|...|+++++..
T Consensus 552 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777777777766654 66667777777777777777777777777777777777777777777 7777777777777766
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 000236 1699 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1778 (1810)
Q Consensus 1699 p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw 1778 (1810)
|.+ ...|..++.++.+.|++++|..+|++++...|++...|..++.++...|+++.|..+|+++.. ..|... ..|
T Consensus 632 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~ 706 (899)
T TIGR02917 632 PDS--ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK--QHPKAA-LGF 706 (899)
T ss_pred CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCh-HHH
Confidence 655 356677777777777777777777777777777777777777777777777777777776666 333344 355
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1779 KKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1779 ~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
..........|++++|...|+++++
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555566666666666666654
No 41
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.57 E-value=7.3e-13 Score=187.02 Aligned_cols=204 Identities=13% Similarity=0.068 Sum_probs=165.2
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhH-------HHHHH--HHHHHH
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-------LNIWV--AYFNLE 1610 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~-------~~lW~--~yl~le 1610 (1810)
.++.++|...|++++..+|+++.+|..++..+.+.|++++|+..|+++++..|......+ ...|. .....+
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999987764322111 01232 224455
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH-----------
Q 000236 1611 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR----------- 1678 (1810)
Q Consensus 1611 ~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~----------- 1678 (1810)
...+ +.++|+..|++|++..|.. ..|..++.+|...|++++|.+.|+++++..|.+..+|..++.+
T Consensus 362 ~~~g--~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 362 LKAN--NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 5677 5699999999999999875 7888999999999999999999999999988887777655443
Q ss_pred -------------------------------HHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000236 1679 -------------------------------LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1726 (1810)
Q Consensus 1679 -------------------------------~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~l 1726 (1810)
+... ++++|.+.|+++++..|.+ +.++..+|.++.+.|++++|...
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~--~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS--VWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 3345 7889999999999999887 47888999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHH
Q 000236 1727 FEGILSEYPKRTDLWSIYLDQ 1747 (1810)
Q Consensus 1727 fe~al~~~P~~~~lw~~ya~~ 1747 (1810)
|++++...|.+.+.+..++.+
T Consensus 518 l~~al~~~P~~~~~~~a~al~ 538 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHH
Confidence 999988888877655544333
No 42
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.56 E-value=7.3e-13 Score=178.44 Aligned_cols=249 Identities=12% Similarity=0.017 Sum_probs=205.9
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1620 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~ 1620 (1810)
....+|...|.+++...|++. .++.++..+.+.|++++|...|++++...|. . ..|..++.+....| +.+.
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~-----~a~~~la~all~~G--d~~e 560 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-N-----EDLLAAANTAQAAG--NGAA 560 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-c-----HHHHHHHHHHHHCC--CHHH
Confidence 345568888899988889753 3555566667899999999999998754332 2 24778888888888 5699
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhC
Q 000236 1621 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1698 (1810)
Q Consensus 1621 a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~ 1698 (1810)
|...|++|++..|.. ..+..++..+.+.|++++|...|++++...|+ ..+|..++.++.+. ++++|...|++++...
T Consensus 561 A~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 561 RDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999988765 55555555556679999999999999999986 89999999999999 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 000236 1699 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1778 (1810)
Q Consensus 1699 p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw 1778 (1810)
|.+ ..++..+|.++...|++++|+.+|+++++..|.+.++|..++.++...|+++.|+..|++++. ..|... .+-
T Consensus 640 Pd~--~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a-~i~ 714 (987)
T PRK09782 640 PNN--SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQA-LIT 714 (987)
T ss_pred CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCc-hhh
Confidence 988 489999999999999999999999999999999999999999999999999999999999998 667776 466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000236 1779 KKYLEYEKSVGEEERIEYVKQKAMEY 1804 (1810)
Q Consensus 1779 ~~yl~~E~~~G~~~~a~~v~~rAl~~ 1804 (1810)
..+..++....+++++.+-+.|+..+
T Consensus 715 ~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 715 PLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 66777777667777777777766543
No 43
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=4.9e-15 Score=141.48 Aligned_cols=75 Identities=35% Similarity=0.696 Sum_probs=71.9
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000236 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416 (1810)
Q Consensus 1340 ~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~ 1416 (1810)
.+++|+++.|+|++|++||+||+|++ +-+||+||||+++.|++|+.+.+++||.|+|+|+++| ++++|+||||..
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~-g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~id-e~GKisLSIr~~ 76 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEG-GKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDID-ENGKISLSIRKL 76 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecC-CCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeec-cCCCcceehHHh
Confidence 57899999999999999999999996 8999999999999999999999999999999999999 599999999985
No 44
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.54 E-value=3.1e-12 Score=150.66 Aligned_cols=271 Identities=21% Similarity=0.304 Sum_probs=191.5
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCc----------------
Q 000236 1530 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI---------------- 1593 (1810)
Q Consensus 1530 ~~~~~e~~~~~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~---------------- 1593 (1810)
-|.............+.++.||+++...|.++.+|..|+.-++...+++....+|.|||...-.
T Consensus 22 sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~ 101 (656)
T KOG1914|consen 22 SWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKG 101 (656)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHcc
Confidence 4666666555556889999999999999999999999999999999999999999999962211
Q ss_pred -----cchh---------------hHHHHHHHHHHHHHHc---CCC----CHHHHHHHHHHHHhcCCC--HHHHHHHHHH
Q 000236 1594 -----REEN---------------EKLNIWVAYFNLENEY---GNP----PEEAVVKVFQRALQYCDP--KKVHLALLGL 1644 (1810)
Q Consensus 1594 -----~~e~---------------e~~~lW~~yl~le~~~---g~~----~~e~a~~vferAl~~~~~--~~i~~~l~~~ 1644 (1810)
++.. -...+|..|++|.... |++ .++..|.+|+||+..-=. ..+|..|.++
T Consensus 102 ~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~f 181 (656)
T KOG1914|consen 102 KLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAF 181 (656)
T ss_pred CcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence 0000 0014588888875432 211 468889999999875411 2455444432
Q ss_pred H-------------HHhCChHHHHHHHHH---------------------------------------------------
Q 000236 1645 Y-------------ERTEQNKLADELLYK--------------------------------------------------- 1660 (1810)
Q Consensus 1645 ~-------------~~~g~~~~A~~~~e~--------------------------------------------------- 1660 (1810)
. +++..|..|+.+|++
T Consensus 182 E~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~ 261 (656)
T KOG1914|consen 182 EQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLT 261 (656)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHH
Confidence 1 112223333333322
Q ss_pred ---------HHHhcCCCHHHHHHHHHHHHHh-c--------------HHHHHHHHHH-----------------------
Q 000236 1661 ---------MIKKFKHSCKVWLRRVQRLLKQ-Q--------------QEGVQAVVQR----------------------- 1693 (1810)
Q Consensus 1661 ---------~lk~~~~~~~~w~~~a~~~~~~-~--------------~~~A~~ll~r----------------------- 1693 (1810)
++--++..+++|+.|+.++.+. + -++|..+|+|
T Consensus 262 ~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~ 341 (656)
T KOG1914|consen 262 RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESR 341 (656)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 2222224466666666666555 4 4455555555
Q ss_pred --------------------------------------------------HHHhCCCCChHHHHHHHHHHHH-HcCCHHH
Q 000236 1694 --------------------------------------------------ALLSLPRHKHIKFISQTAILEF-KNGVADR 1722 (1810)
Q Consensus 1694 --------------------------------------------------alk~~p~~~~~~~~~~~a~l~~-~~g~~e~ 1722 (1810)
|-+.--.. -.++...|.+++ -.+|.+-
T Consensus 342 ~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~--hhVfVa~A~mEy~cskD~~~ 419 (656)
T KOG1914|consen 342 YDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR--HHVFVAAALMEYYCSKDKET 419 (656)
T ss_pred cccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc--chhhHHHHHHHHHhcCChhH
Confidence 33221111 156666676666 3578999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000236 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802 (1810)
Q Consensus 1723 Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl 1802 (1810)
|-.+|+-.|+.+++.+..-..|++++...++-..||.+|||++...+++++.+.+|.+|++||...||...+.++-.|-.
T Consensus 420 AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 420 AFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999667999999999999999999999999888766644
No 45
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=99.54 E-value=8.2e-13 Score=144.00 Aligned_cols=213 Identities=19% Similarity=0.139 Sum_probs=168.5
Q ss_pred ccCCCEEEEEEEEEeeCcCeEEEEeCCce-EEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCC
Q 000236 1132 IHEGDIVGGRISKILSGVGGLVVQIGPHL-YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1210 (1810)
Q Consensus 1132 l~~G~~v~g~V~~i~~~~~g~~V~l~~~~-~G~i~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~ 1210 (1810)
+.+|+.....|.+.+.+ |+|++-+.+- .-++|-++.. .....+|++|+++|+- |.
T Consensus 3 ~~iG~~~~l~V~~~~~~--g~fL~~~~~~~~ilL~k~~~~------------------~~e~evGdev~vFiY~-D~--- 58 (287)
T COG2996 3 IKIGQINSLEVVEFSDF--GYFLDAGEDGTTILLPKSEPE------------------EDELEVGDEVTVFIYV-DS--- 58 (287)
T ss_pred ccccceEEEEEEEeece--eEEEecCCCceEEeccccCCc------------------CCccccCcEEEEEEEE-CC---
Confidence 45999999999999999 9999987543 5555655441 1346799999999886 44
Q ss_pred CcceEEEeecccccCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEe-eceEEEEeCCCcEEEEEcccCCCc
Q 000236 1211 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSRKLDAKVLLSNLSDG 1289 (1810)
Q Consensus 1211 g~~~l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~-~~G~fV~l~~~v~g~v~~s~ls~~ 1289 (1810)
.+++.++++.+. ..+|+.-.++|+.+. +-|+||+.|-.-+.+|+++++...
T Consensus 59 -~~rl~aTt~~p~---------------------------~tvg~~g~~~Vv~v~~~lGaFlD~Gl~KDl~vp~~elp~~ 110 (287)
T COG2996 59 -EDRLIATTREPK---------------------------ATVGEYGWLKVVEVNKDLGAFLDWGLPKDLLVPLDELPTL 110 (287)
T ss_pred -CCceeheeecce---------------------------EeecceeEEEEEEEcCCcceEEecCCCcceeeehhhcccc
Confidence 357888877664 568999999999998 789999999889999999998753
Q ss_pred ccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCC---CCCcEEEEEEEEEeeceEEEEEeCC
Q 000236 1290 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL---HVGDIVIGQIKRVESYGLFITIENT 1366 (1810)
Q Consensus 1290 ~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~---~~G~~v~G~V~~i~~~G~fV~l~~~ 1366 (1810)
..-. +++|+.+-|+ +.+|+ ++||...++.-..-. ...... -.+|.+.|+|.+....|.||-+++
T Consensus 111 ~~~w----pq~Gd~l~v~-l~~Dk-k~Ri~g~~a~~~~l~------~l~~~~~~~l~nq~v~~tVYr~~~~G~fv~~e~- 177 (287)
T COG2996 111 KSLW----PQKGDKLLVY-LYVDK-KGRIWGTLAIEKILE------NLATPAYNNLKNQEVDATVYRLLESGTFVITEN- 177 (287)
T ss_pred cccC----CCCCCEEEEE-EEEcc-CCcEEEEecchhHHH------hcCCccchhhhcCeeeeEEEEEeccceEEEEcC-
Confidence 2212 4689999998 57886 559988887644311 011222 259999999999999999999976
Q ss_pred ceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccccc
Q 000236 1367 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418 (1810)
Q Consensus 1367 ~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~~~ 1418 (1810)
+.-|++|.||.... .+.|++++++|+.+. ++++|.||+++.-.
T Consensus 178 ~~~GfIh~sEr~~~--------prlG~~l~~rVi~~r-eDg~lnLSl~p~~~ 220 (287)
T COG2996 178 GYLGFIHKSERFAE--------PRLGERLTARVIGVR-EDGKLNLSLRPRAH 220 (287)
T ss_pred CeEEEEcchhhccc--------ccCCceEEEEEEEEc-cCCeeecccccccH
Confidence 99999999997644 689999999999999 59999999998643
No 46
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.53 E-value=2.9e-12 Score=172.74 Aligned_cols=245 Identities=12% Similarity=0.000 Sum_probs=213.9
Q ss_pred cHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000236 1546 TPDEFERLVRSSPN--SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1623 (1810)
Q Consensus 1546 a~~~fer~l~~~P~--~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~ 1623 (1810)
+-..+.+++..+|. ++..|..++.++.. ++.++|...|.+++...|... .++.++......| +.++|..
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~------~~L~lA~al~~~G--r~eeAi~ 530 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW------QHRAVAYQAYQVE--DYATALA 530 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH------HHHHHHHHHHHCC--CHHHHHH
Confidence 34455666667788 99999999999987 899999999999998877311 2344444446778 5699999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC
Q 000236 1624 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1702 (1810)
Q Consensus 1624 vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~ 1702 (1810)
.|++++...+....|..++.++.+.|++++|...|+++++..|.....+..++..+.+. ++++|...|+++++..|.
T Consensus 531 ~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-- 608 (987)
T PRK09782 531 AWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-- 608 (987)
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--
Confidence 99999887777778899999999999999999999999999888888777777767777 999999999999999994
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000236 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782 (1810)
Q Consensus 1703 ~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl 1782 (1810)
..+|..+|.++.+.|++++|...|++++...|++..+|..++.++...|++++|+..|++++. ..|... .+|....
T Consensus 609 -~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~-~a~~nLA 684 (987)
T PRK09782 609 -ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDP-ALIRQLA 684 (987)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999 777888 6888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Q 000236 1783 EYEKSVGEEERIEYVKQKAMEYV 1805 (1810)
Q Consensus 1783 ~~E~~~G~~~~a~~v~~rAl~~v 1805 (1810)
......|+.++|...|++|++.-
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC
Confidence 88899999999999999998754
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.50 E-value=6.2e-12 Score=158.01 Aligned_cols=252 Identities=11% Similarity=0.060 Sum_probs=208.3
Q ss_pred ccCCCCcHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCC
Q 000236 1540 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1615 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~----~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~ 1615 (1810)
.++.++|...|++++...+.. ...|..++..+...|++++|..+|+++++..|.. ...|..++.++...+
T Consensus 82 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~g- 155 (389)
T PRK11788 82 RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA-----EGALQQLLEIYQQEK- 155 (389)
T ss_pred cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch-----HHHHHHHHHHHHHhc-
Confidence 345778888888887643222 3678899999999999999999999999754431 357888888888999
Q ss_pred CCHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHH
Q 000236 1616 PPEEAVVKVFQRALQYCDPK------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQ 1688 (1810)
Q Consensus 1616 ~~~e~a~~vferAl~~~~~~------~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~ 1688 (1810)
+.++|.+.|+++++..|.. ..|..++.++.+.+++++|...|+++++..|.....|+.++.++.+. ++++|.
T Consensus 156 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 156 -DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred -hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5599999999999877642 35678888999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 000236 1689 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1768 (1810)
Q Consensus 1689 ~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~ 1768 (1810)
+.|++++...|... ..++..++..+...|++++|...|+++++..|+.. ++..++.++.+.|++++|+.+|++++.
T Consensus 235 ~~~~~~~~~~p~~~-~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~-- 310 (389)
T PRK11788 235 EALERVEEQDPEYL-SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLR-- 310 (389)
T ss_pred HHHHHHHHHChhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence 99999999877652 46788899999999999999999999999999764 458899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHH
Q 000236 1769 LPPKKMKFLFKKYLEYEKS---VGEEERIEYVKQKAMEY 1804 (1810)
Q Consensus 1769 ~~p~~~~~lw~~yl~~E~~---~G~~~~a~~v~~rAl~~ 1804 (1810)
..|+.. .|..++..... +|...++..++++.++.
T Consensus 311 ~~P~~~--~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 311 RHPSLR--GFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hCcCHH--HHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 556555 34444444332 56788888888887763
No 48
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.8e-14 Score=137.74 Aligned_cols=77 Identities=30% Similarity=0.486 Sum_probs=73.5
Q ss_pred cCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 633 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 633 ~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
.+++|++++|+|+.|++||+||+|++|=+||+|+|++.+.|+.++.+++++||.|.|+|+++|. ++++.||+|....
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide-~GKisLSIr~~~e 78 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE-NGKISLSIRKLEE 78 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeecc-CCCcceehHHhhh
Confidence 3679999999999999999999999999999999999999999999999999999999999996 9999999998754
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=9e-13 Score=160.13 Aligned_cols=254 Identities=17% Similarity=0.099 Sum_probs=219.2
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccc-hhh-----------------------
Q 000236 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE-ENE----------------------- 1598 (1810)
Q Consensus 1543 ~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~-e~e----------------------- 1598 (1810)
-.+|...|+.+-..+++-......++..|..+.++++|+++|+.+-+.-|.+- ++|
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56677888885456778776667899999999999999999999988777652 111
Q ss_pred -----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHH
Q 000236 1599 -----KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1672 (1810)
Q Consensus 1599 -----~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w 1672 (1810)
+.+-|.++.|++...+ +-+.|.+.|+||++..|.. =.|..++.=+.....++.|...|+.++...++...+|
T Consensus 415 ~~~~~sPesWca~GNcfSLQk--dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQK--DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhh--HHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 2277999999999888 5599999999999999975 4566666667788899999999999999999999999
Q ss_pred HHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000236 1673 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1751 (1810)
Q Consensus 1673 ~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~ 1751 (1810)
+-++..|+++ +++.|.-.|++|++.+|.+ ..+...++.++.+.|+.|+|..+|++|+..+|+++.-.+.-+.+++..
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSN--SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccc--hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 9999999999 9999999999999999998 378888899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1752 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1752 gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
+++++|...||.+-. +.|+.. ..+-......++.|..+-|..-|-=|..
T Consensus 571 ~~~~eal~~LEeLk~--~vP~es-~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 571 GRYVEALQELEELKE--LVPQES-SVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred cchHHHHHHHHHHHH--hCcchH-HHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 999999999999888 888887 6777777788888988887776665543
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=6.2e-12 Score=146.48 Aligned_cols=239 Identities=16% Similarity=0.172 Sum_probs=191.5
Q ss_pred HhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCC
Q 000236 1538 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1617 (1810)
Q Consensus 1538 ~~~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~ 1617 (1810)
++.++.-.|..+|+.++..+|.+..++|..+..+++..+.++-...|..|.+..|... .++.....+..-++ +
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~-----dvYyHRgQm~flL~--q 409 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP-----DVYYHRGQMRFLLQ--Q 409 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC-----chhHhHHHHHHHHH--H
Confidence 3567888899999999999998888899999999999999999999999997666433 34555555545555 4
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Q 000236 1618 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1695 (1810)
Q Consensus 1618 ~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ral 1695 (1810)
.+.|..-|++|+.+.|.. -.|++++-.+.+.++++++...|+.+.++||..++++..+|+++..+ ++++|.+.|..|+
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 488999999999999887 66788888888888999999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCC----hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 000236 1696 LSLPRHK----HIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1770 (1810)
Q Consensus 1696 k~~p~~~----~~~~~~~~a~l~~~-~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~ 1770 (1810)
.+-|..+ .+..++.-|.+.++ .+++.+|..++++|+..+|++...+..+++++.+.|++++|..+||.++. +.
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~--lA 567 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ--LA 567 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HH
Confidence 9988721 12233333333322 37899999999999999999999999999999999999999999999987 44
Q ss_pred chhHHHHHHHHHHHHH
Q 000236 1771 PKKMKFLFKKYLEYEK 1786 (1810)
Q Consensus 1771 p~~~~~lw~~yl~~E~ 1786 (1810)
...+ .....|---|.
T Consensus 568 rt~~-E~~~a~s~aeA 582 (606)
T KOG0547|consen 568 RTES-EMVHAYSLAEA 582 (606)
T ss_pred HhHH-HHHHHHHHHHH
Confidence 3222 34444444343
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.47 E-value=3.6e-13 Score=160.80 Aligned_cols=215 Identities=16% Similarity=0.151 Sum_probs=120.9
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1620 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~ 1620 (1810)
++.+.+...|++++..+|.++.....++.+ ...+++++|..+++++.+..+. ...|..++.++...+ +.++
T Consensus 58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~------~~~l~~~l~~~~~~~--~~~~ 128 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD------PRYLLSALQLYYRLG--DYDE 128 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT---HHH
T ss_pred cccccccccccccccccccccccccccccc-cccccccccccccccccccccc------cchhhHHHHHHHHHh--HHHH
Confidence 457889999999999999999999999998 7999999999999998865442 246888888888888 5699
Q ss_pred HHHHHHHHHhcCC--C-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Q 000236 1621 VVKVFQRALQYCD--P-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1696 (1810)
Q Consensus 1621 a~~vferAl~~~~--~-~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk 1696 (1810)
+..+++++.+..+ . ..+|..++.++.+.|+.++|...|+++++..|++..++..++.++... +.+++++++++..+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999886552 2 389999999999999999999999999999999999999999999999 99999999999988
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1697 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1697 ~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
..|.+. .+|..+|..++..|++++|..+|+++++..|+++.++..|++++.+.|+.++|..++.+++.
T Consensus 209 ~~~~~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 209 AAPDDP--DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp H-HTSC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HCcCHH--HHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 877764 68999999999999999999999999999999999999999999999999999999999886
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=9.6e-12 Score=162.10 Aligned_cols=244 Identities=10% Similarity=-0.065 Sum_probs=198.1
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHc
Q 000236 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSM---------ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1613 (1810)
Q Consensus 1543 ~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~---------~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~ 1613 (1810)
..+|...|++++..+|+++..|..++.++... +++++|...+++|++..|.. ...|..+..++...
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~-----~~a~~~lg~~~~~~ 351 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN-----PQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHc
Confidence 45788899999999999999999888776532 35899999999999876642 35788888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHH
Q 000236 1614 GNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVV 1691 (1810)
Q Consensus 1614 g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll 1691 (1810)
+ +.++|...|++|++.+|.. ..|..++.++...|++++|...|++++...|.+...++.++..+... ++++|...+
T Consensus 352 g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 S--EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred c--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9 4599999999999999986 88999999999999999999999999999999887766666667777 999999999
Q ss_pred HHHHHhC-CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-
Q 000236 1692 QRALLSL-PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL- 1769 (1810)
Q Consensus 1692 ~ralk~~-p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~- 1769 (1810)
++++... |.. +.++..+|.++...|++++|+..|++++...|.....|...+..+...|+ +|+..+++++....
T Consensus 430 ~~~l~~~~p~~--~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQHLQDN--PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhccccC--HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 9999886 444 47788899999999999999999999999999988889888888888884 78888888666111
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000236 1770 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802 (1810)
Q Consensus 1770 ~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl 1802 (1810)
.+.+. .| +..++.-+|+.+.+..+ +++.
T Consensus 506 ~~~~~--~~--~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 506 IDNNP--GL--LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred hhcCc--hH--HHHHHHHHhhhHHHHHH-HHhh
Confidence 11111 22 44566777888777666 5443
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.3e-11 Score=143.09 Aligned_cols=248 Identities=13% Similarity=0.114 Sum_probs=178.1
Q ss_pred CCcHHHHHHHHHc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000236 1544 PRTPDEFERLVRS-SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1622 (1810)
Q Consensus 1544 ~~a~~~fer~l~~-~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~ 1622 (1810)
+++...+++++.. .|++..+-...+.....+.++|+|..+|+...+..|+|-+ .+.++...+..- . +..+.-
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~--dmdlySN~LYv~---~--~~skLs 316 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD--DMDLYSNVLYVK---N--DKSKLS 316 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch--hHHHHhHHHHHH---h--hhHHHH
Confidence 4566778888765 8999999999999999999999999999999999888643 222332222221 1 112333
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCC
Q 000236 1623 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1700 (1810)
Q Consensus 1623 ~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1700 (1810)
-+.+...+.+..+ ....-.++.|...+++++|...|+++++.+|....+|..++.=|+++ +...|.+.|+||++.+|.
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence 3344444444333 44445566777777778888888888888888888888888888888 788888888888888877
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000236 1701 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1780 (1810)
Q Consensus 1701 ~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~ 1780 (1810)
+ ..+|..+||.|.-++.+.-|.-.|++|+..-|.+..+|..+++++.+.++++.|...|.||+. +..-+. ....+
T Consensus 397 D--yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~-~~l~~ 471 (559)
T KOG1155|consen 397 D--YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEG-SALVR 471 (559)
T ss_pred h--HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccch-HHHHH
Confidence 6 378888888887778888888888888888888888888888888888888888888888887 332222 34555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1781 YLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1781 yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
..++.++.++.++|...|++.++
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 66666677777777777777766
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=1.2e-10 Score=146.29 Aligned_cols=265 Identities=12% Similarity=0.085 Sum_probs=204.3
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHH
Q 000236 1531 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1610 (1810)
Q Consensus 1531 ~~~~e~~~~~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le 1610 (1810)
....-..+..++.+.|.+...+.....|+....++-.+....++|+++.|...++++.+..|... +.+...+..+.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~----l~~~~~~a~l~ 163 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN----ILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHH
Confidence 33334445567788888888888777777777777777778888888888888888887666422 34566667777
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHh-------------------------
Q 000236 1611 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKK------------------------- 1664 (1810)
Q Consensus 1611 ~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~------------------------- 1664 (1810)
...+ +.+.|+..++++++..|.. .++..++.+|.+.|++++|.+.+.++.+.
T Consensus 164 l~~~--~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 164 LAQN--ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 4588888888888888765 67777777777777777666655554422
Q ss_pred -------------cC----CCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHH--HHHHHHHHHHHcCCHHHHH
Q 000236 1665 -------------FK----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK--FISQTAILEFKNGVADRGR 1724 (1810)
Q Consensus 1665 -------------~~----~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~--~~~~~a~l~~~~g~~e~Ar 1724 (1810)
.| +++.+++.++..+... ++++|.+.++++++..|.+.... .+..+.. ...++.+.++
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~--l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR--LKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh--cCCCChHHHH
Confidence 22 3678888999999999 99999999999999999875321 2222222 3457899999
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHH--HHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000236 1725 SMFEGILSEYPKRT--DLWSIYLDQEIRLGDVDLIRGLFER--AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1800 (1810)
Q Consensus 1725 ~lfe~al~~~P~~~--~lw~~ya~~e~k~gd~e~ar~lfer--al~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~r 1800 (1810)
..++++++..|+++ .+...|+.++.+.|++++|+..|++ ++. ..|+.. .+..+..+..+.|+.++|.+++++
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~--~~p~~~--~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK--EQLDAN--DLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh--cCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999 8999999999999999999999995 555 566555 355888999999999999999999
Q ss_pred HHHHHHh
Q 000236 1801 AMEYVES 1807 (1810)
Q Consensus 1801 Al~~v~~ 1807 (1810)
|+..+.+
T Consensus 396 ~l~~~~~ 402 (409)
T TIGR00540 396 SLGLMLA 402 (409)
T ss_pred HHHHHhc
Confidence 9987754
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=2.1e-11 Score=131.03 Aligned_cols=192 Identities=18% Similarity=0.133 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000236 1600 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1678 (1810)
Q Consensus 1600 ~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~ 1678 (1810)
....+.+.--+++.| +...|+.-+++|++..|+. ..|..++.+|.+.|..+.|.+.|+++++..|++.++..+|+.|
T Consensus 35 a~arlqLal~YL~~g--d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQG--DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 355666666667788 6699999999999999986 9999999999999999999999999999999999999999999
Q ss_pred HHHh-cHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 000236 1679 LLKQ-QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1756 (1810)
Q Consensus 1679 ~~~~-~~~~A~~ll~ralk~~p~-~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ 1756 (1810)
+-.+ ++++|.+.|++|+.. |. ..+...|.+.+..-++.|+.+.|+.+|+++|..+|+++......++.+++.|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 9999 999999999999974 33 23458899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000236 1757 IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYV 1797 (1810)
Q Consensus 1757 ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v 1797 (1810)
||..|++... -.+-++..+|.. +.+++..||...+.+.
T Consensus 192 Ar~~~~~~~~--~~~~~A~sL~L~-iriak~~gd~~~a~~Y 229 (250)
T COG3063 192 ARLYLERYQQ--RGGAQAESLLLG-IRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHHh--cccccHHHHHHH-HHHHHHhccHHHHHHH
Confidence 9999999988 333555577765 4689999998876543
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.7e-11 Score=142.89 Aligned_cols=235 Identities=13% Similarity=0.070 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHH
Q 000236 1561 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHL 1639 (1810)
Q Consensus 1561 ~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~ 1639 (1810)
......-+-|++-.|+.-.|...|+.++...|... ++++.+..++.... +.++..+.|.+|...+|.+ .+|+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-----~lyI~~a~~y~d~~--~~~~~~~~F~~A~~ldp~n~dvYy 398 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-----SLYIKRAAAYADEN--QSEKMWKDFNKAEDLDPENPDVYY 398 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-----hHHHHHHHHHhhhh--ccHHHHHHHHHHHhcCCCCCchhH
Confidence 33444556677788999999999999998766322 34666666666666 4488999999999999987 9999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000236 1640 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1718 (1810)
Q Consensus 1640 ~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g 1718 (1810)
+.++++.-.+++++|..-|++++...|.+.-.+..++-.++++ +++++...|+.+.+.+|.. +.++..||+.+..++
T Consensus 399 HRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 399 HRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQ 476 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999999 9999999999999999999 499999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCH
Q 000236 1719 VADRGRSMFEGILSEYPK------RTDLWSIYLDQEI-RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1791 (1810)
Q Consensus 1719 ~~e~Ar~lfe~al~~~P~------~~~lw~~ya~~e~-k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~ 1791 (1810)
+++.|...|+.++...|. +...+..-+-+.. =.+|+.+|..++.+|+. +.|+.- ..+....+||-++|+.
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--~Dpkce-~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--LDPKCE-QAYETLAQFELQRGKI 553 (606)
T ss_pred hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--cCchHH-HHHHHHHHHHHHHhhH
Confidence 999999999999999998 5444433333333 23899999999999999 777765 6788889999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 000236 1792 ERIEYVKQKAMEYVES 1807 (1810)
Q Consensus 1792 ~~a~~v~~rAl~~v~~ 1807 (1810)
++|..+|++++.+...
T Consensus 554 ~eAielFEksa~lArt 569 (606)
T KOG0547|consen 554 DEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
No 57
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.41 E-value=3.5e-11 Score=129.33 Aligned_cols=196 Identities=15% Similarity=0.094 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHH
Q 000236 1561 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHL 1639 (1810)
Q Consensus 1561 ~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~ 1639 (1810)
....+.++.-|++.|++..|+..+++||+..|... ..|..+...+...| ..+.|.+-|++|++..|.+ ++..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~-----~a~~~~A~~Yq~~G--e~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY-----LAHLVRAHYYQKLG--ENDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHcC--ChhhHHHHHHHHHhcCCCccchhh
Confidence 45667788889999999999999999998777533 58999999999999 5599999999999999987 9999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000236 1640 ALLGLYERTEQNKLADELLYKMIK--KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1716 (1810)
Q Consensus 1640 ~l~~~~~~~g~~~~A~~~~e~~lk--~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~ 1716 (1810)
.|+.+++..|++++|...|++++. .|+.....|.+.+-+.++. +.+.|+..|+|+|+.+|... .....+++.+++
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--~~~l~~a~~~~~ 185 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--PALLELARLHYK 185 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--hHHHHHHHHHHh
Confidence 999999999999999999999998 4678899999999999999 99999999999999999985 789999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1717 NGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1717 ~g~~e~Ar~lfe~al~~~P~~~~-lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
.|++-.||..|++.....+-..+ +|. -+.++...||.+.+-..=.+.-.
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~~~A~sL~L-~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 186 AGDYAPARLYLERYQQRGGAQAESLLL-GIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cccchHHHHHHHHHHhcccccHHHHHH-HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999988776655 555 47888899999877664333333
No 58
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=99.41 E-value=4.7e-13 Score=154.38 Aligned_cols=109 Identities=22% Similarity=0.266 Sum_probs=97.2
Q ss_pred cCC-CCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000236 633 HIH-PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709 (1810)
Q Consensus 633 ~~~-~G~~~~G~V~~i~~~G~fV~f~--~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~ 709 (1810)
.++ +|+++.|+|++|++||+||.+. +|+.||+|+|++||.++.+|++.+++||.|.|+|+++|+++++|.||+|...
T Consensus 13 ~~P~~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~v~ 92 (319)
T PTZ00248 13 KFPEEDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKRVS 92 (319)
T ss_pred hCCCCCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeeecc
Confidence 355 7999999999999999999996 7999999999999999999999999999999999999999999999999876
Q ss_pred cCCCChhhHHHHHHHHHHHHHhhcccCCCcccccccccccccEEEEEEEEeec-ceeEEE
Q 000236 710 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVVS 768 (1810)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~-~g~~v~ 768 (1810)
. +|| ......|+.|++|+++|..+.+ +|++++
T Consensus 93 ~------------------------~pw---~~~~e~~~~g~~v~~~V~~ia~~~g~~~e 125 (319)
T PTZ00248 93 P------------------------EDI---EACEEKFSKSKKVHSIMRHIAQKHGMSVE 125 (319)
T ss_pred c------------------------chH---HHHHHhCcCCCEEEEEEEEchhhcCCCHH
Confidence 5 233 3345778999999999999965 898765
No 59
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.40 E-value=1.2e-10 Score=145.76 Aligned_cols=253 Identities=14% Similarity=0.167 Sum_probs=183.6
Q ss_pred HhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCC
Q 000236 1538 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1617 (1810)
Q Consensus 1538 ~~~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~ 1617 (1810)
...++.++|...+...+..+|.++.+|..++..+.++|+++++...+--|....|. + ..+|..+..+-.++++
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d----~e~W~~ladls~~~~~-- 222 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-D----YELWKRLADLSEQLGN-- 222 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-C----hHHHHHHHHHHHhccc--
Confidence 34577999999999999999999999999999999999999999888777654443 2 2589999999999995
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHh-cHHHHHHH
Q 000236 1618 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW-----LRRVQRLLKQ-QQEGVQAV 1690 (1810)
Q Consensus 1618 ~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w-----~~~a~~~~~~-~~~~A~~l 1690 (1810)
.+.|+-.|.||++.+|.+ ......+.+|.++|++..|...|.+++...|...--| ..+++.+... +.+.|.+.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 599999999999999987 8889999999999999999999999998877221111 1234444444 33555544
Q ss_pred HHHHHHhCC-----------------------------------------------------------------------
Q 000236 1691 VQRALLSLP----------------------------------------------------------------------- 1699 (1810)
Q Consensus 1691 l~ralk~~p----------------------------------------------------------------------- 1699 (1810)
++.++....
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 444333110
Q ss_pred ---------------------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Q 000236 1700 ---------------------------RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK-RTDLWSIYLDQEIRL 1751 (1810)
Q Consensus 1700 ---------------------------~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~-~~~lw~~ya~~e~k~ 1751 (1810)
...++.+++..|.++.+.|.+..|..+|..++...+. +..+|...+.++...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 0112456666777777777777777777777665553 455777777777777
Q ss_pred CChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000236 1752 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1800 (1810)
Q Consensus 1752 gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~r 1800 (1810)
|.+++|...|+.++. ..|.+. +.-.....+..+.|+.++|....++
T Consensus 463 ~e~e~A~e~y~kvl~--~~p~~~-D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLI--LAPDNL-DARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred hhHHHHHHHHHHHHh--cCCCch-hhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 777777777777776 555555 4555556666667777755554443
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=5.5e-11 Score=136.85 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000236 1600 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1678 (1810)
Q Consensus 1600 ~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~ 1678 (1810)
...|..+...+...+ +.++|.+.|+++++..|.. ..|..++.+|...|++++|...|++++...+....+|..++.+
T Consensus 31 ~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQG--DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 467888888888888 5599999999999998875 8899999999999999999999999999999999999999999
Q ss_pred HHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 000236 1679 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1757 (1810)
Q Consensus 1679 ~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~a 1757 (1810)
+... ++++|.+.|++++...+.......|..++..++..|++++|...|++++...|.+...|..++.++...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999 999999999999986433334578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1758 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1758 r~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
...|++++. ..|... ..|.....+....|+.+.++.+.+.+..
T Consensus 189 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQ--TYNQTA-ESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHH--hCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999998 445555 3455667778889999999888777654
No 61
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.40 E-value=7.8e-13 Score=121.85 Aligned_cols=71 Identities=35% Similarity=0.632 Sum_probs=66.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCc---cccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000236 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVT 1321 (1810)
Q Consensus 1251 l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~---~~~f~~G~~V~~~Vl~vd~~~~ri~lS 1321 (1810)
+++|++|.|+|++++++|+||+++++++|+||++++||.++.+| .+.|++||.|+|+|+++|+++++|.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSSSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCCCCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 57899999999999999999999999999999999999997765 588999999999999999999999886
No 62
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.9e-11 Score=137.86 Aligned_cols=252 Identities=15% Similarity=0.103 Sum_probs=190.6
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1620 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~ 1620 (1810)
.|..++...||..++.+|.....---|-..+.-..+-.+.--+++.+.....+|.| -..-.+|.+...+ +-|+
T Consensus 276 rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~E-----TCCiIaNYYSlr~--eHEK 348 (559)
T KOG1155|consen 276 RDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPE-----TCCIIANYYSLRS--EHEK 348 (559)
T ss_pred hhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcc-----ceeeehhHHHHHH--hHHH
Confidence 34889999999999999975444444444443334444444555555555455443 3444556666666 3488
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhC
Q 000236 1621 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1698 (1810)
Q Consensus 1621 a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~ 1698 (1810)
|...|+||++.+|.. .+|..++.=|..+.+...|.+.|++|+..+|.+..+|+-+++.|.-+ .+.-|.-.|++|++..
T Consensus 349 Av~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k 428 (559)
T KOG1155|consen 349 AVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK 428 (559)
T ss_pred HHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence 999999999999886 88999999888888899999999999999999999999999988888 8888999999999888
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCchh
Q 000236 1699 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS-----LPPKK 1773 (1810)
Q Consensus 1699 p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~-----~~p~~ 1773 (1810)
|.+ ..+|..+|+.|.+.+++++|...|.+++.....+..+...+++++.+.++.++|...|++.+... ..++-
T Consensus 429 PnD--sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t 506 (559)
T KOG1155|consen 429 PND--SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET 506 (559)
T ss_pred CCc--hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH
Confidence 877 48899999999999999999999999988877777888888999999999999999998888711 22222
Q ss_pred HH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1774 MK-FLFKKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1774 ~~-~lw~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
.+ .+| ...++.+.+++++|.....+++.
T Consensus 507 ~ka~~f--LA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 507 IKARLF--LAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHH--HHHHHHhhcchHHHHHHHHHHhc
Confidence 11 234 55678888888887765555543
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=6.7e-11 Score=136.16 Aligned_cols=199 Identities=16% Similarity=0.117 Sum_probs=177.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HH
Q 000236 1559 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KV 1637 (1810)
Q Consensus 1559 ~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i 1637 (1810)
.....|+.++..+...+++++|...++++++..|.. ...|..+..++...+ +.+.|.+.|+++++..|.. ..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~ 101 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD-----YLAYLALALYYQQLG--ELEKAEDSFRRALTLNPNNGDV 101 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHH
Confidence 347888999999999999999999999999776532 357888888888889 5699999999999998875 88
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000236 1638 HLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1714 (1810)
Q Consensus 1638 ~~~l~~~~~~~g~~~~A~~~~e~~lk~~--~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~ 1714 (1810)
|..++.++...|++++|...|++++... +.....|..++..+... ++++|.+.|+++++..|.+ ...|..++.++
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~ 179 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--PESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHH
Confidence 9999999999999999999999999743 45678899999999999 9999999999999999876 47899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1715 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1715 ~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
+..|++++|..+|++++...|.+...|...+.++...|+.+.|+.+++.+..
T Consensus 180 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999999898888888899999999999999999888765
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=6.4e-11 Score=154.42 Aligned_cols=236 Identities=12% Similarity=-0.036 Sum_probs=179.8
Q ss_pred cCCCCHHHHHHHHHHH--H---hcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHc---CC----CCHHHHHH
Q 000236 1556 SSPNSSFVWIKYMAFM--L---SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY---GN----PPEEAVVK 1623 (1810)
Q Consensus 1556 ~~P~~~~~W~~y~~~~--~---~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~---g~----~~~e~a~~ 1623 (1810)
..|.+...|..|..-. + ...++++|.+.|++|++..|... ..|..+..++... +. .+.++|..
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a-----~a~~~La~~~~~~~~~g~~~~~~~~~~A~~ 325 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI-----APYCALAECYLSMAQMGIFDKQNAMIKAKE 325 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH-----HHHHHHHHHHHHHHHcCCcccchHHHHHHH
Confidence 3455666665554442 2 12357899999999998777432 2444333332221 11 03589999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCC
Q 000236 1624 VFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1701 (1810)
Q Consensus 1624 vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~ 1701 (1810)
.+++|++..|.. ..|..++.++...|++++|...|+++++..|++..+|+.++..+... ++++|...|++|++..|.+
T Consensus 326 ~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 326 HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999986 89999999999999999999999999999999999999999999999 9999999999999999987
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000236 1702 KHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1780 (1810)
Q Consensus 1702 ~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~-P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~ 1780 (1810)
. ..+..++..++..|++++|...|++++... |..+..|..++.++...|++++|+..|+++.. .+|... ..+..
T Consensus 406 ~--~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~-~~~~~ 480 (553)
T PRK12370 406 A--AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGL-IAVNL 480 (553)
T ss_pred h--hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhH-HHHHH
Confidence 4 444455666777899999999999999875 78888999999999999999999999999877 455443 23433
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1781 YLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1781 yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
........| +.+...+++.++
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHH
Confidence 333334444 355555555444
No 65
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.38 E-value=1.4e-10 Score=156.81 Aligned_cols=260 Identities=10% Similarity=0.010 Sum_probs=201.6
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------------------------------
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL------------------------------- 1588 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral------------------------------- 1588 (1810)
.++..+|...|++++..+|++..+|..++..+...+..++|...+++++
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHH
Confidence 3558888899999999999999999998888877777666655555332
Q ss_pred ---------------HhcCccchh--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhC
Q 000236 1589 ---------------QTINIREEN--EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP--KKVHLALLGLYERTE 1649 (1810)
Q Consensus 1589 ---------------~~~~~~~e~--e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~--~~i~~~l~~~~~~~g 1649 (1810)
+..+...+. .....++..+......+ +.+.|+..|+++++..+. ......++.+|...+
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g--~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD--RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 211110000 00111222122234456 458999999999988642 333334688999999
Q ss_pred ChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCC-------------CChHHHHHHHH
Q 000236 1650 QNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-------------HKHIKFISQTA 1711 (1810)
Q Consensus 1650 ~~~~A~~~~e~~lk~~~~~----~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~-------------~~~~~~~~~~a 1711 (1810)
++++|...|++++...+.. ...+..++..+.++ ++++|.+.|++++...|. .....++..+|
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 9999999999999876544 45677777778888 999999999999998763 12346778899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCH
Q 000236 1712 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1791 (1810)
Q Consensus 1712 ~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~ 1791 (1810)
.++...|++++|..+|++++...|.+..+|..++.++...|++++|...|++++. +.|++. .++...+......|++
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~-~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNI-NLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCh-HHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999999999999999999999 778887 5777777788889999
Q ss_pred HHHHHHHHHHHHH
Q 000236 1792 ERIEYVKQKAMEY 1804 (1810)
Q Consensus 1792 ~~a~~v~~rAl~~ 1804 (1810)
++|..+++++++.
T Consensus 444 ~~A~~~~~~ll~~ 456 (765)
T PRK10049 444 RQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 66
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=3.4e-10 Score=141.54 Aligned_cols=251 Identities=14% Similarity=0.123 Sum_probs=187.1
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCH
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKY-MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1618 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y-~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~ 1618 (1810)
.++...+.....+.-. ..+++.+.+-. +.+..+.|+++.|...|++|.+..|... +...+....++...+ +.
T Consensus 97 eGd~~~A~k~l~~~~~-~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~----~~~~l~~a~l~l~~g--~~ 169 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD-HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ----LPVEITRVRIQLARN--EN 169 (398)
T ss_pred CCCHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHCC--CH
Confidence 4555555433333322 12223444434 3334788888888888888886555321 223333456667777 45
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHH----------------------------------
Q 000236 1619 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIK---------------------------------- 1663 (1810)
Q Consensus 1619 e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk---------------------------------- 1663 (1810)
+.|.+.++++.+..|.+ .++..++.+|.+.|++++|.+++.++.+
T Consensus 170 ~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 170 HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888888888888765 7777778888888888877766555542
Q ss_pred --------hcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000236 1664 --------KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1734 (1810)
Q Consensus 1664 --------~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~ 1734 (1810)
..++++.++..|+..+... +.++|...++++++.. .+ ..+...|+++ ..++++++...+++.++.+
T Consensus 250 ~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~-~~--~~l~~l~~~l--~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ-YD--ERLVLLIPRL--KTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC--HHHHHHHhhc--cCCChHHHHHHHHHHHhhC
Confidence 3345777888999999999 9999999999999943 33 3666667765 3489999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000236 1735 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806 (1810)
Q Consensus 1735 P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~ 1806 (1810)
|++++++..++.++.+.+++++|+..|++++. ..|... .+..+...+.+.|+.+++..+|++++..+.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~--~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAY--DYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999 656654 456688888999999999999999998764
No 67
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.37 E-value=8.5e-11 Score=158.96 Aligned_cols=254 Identities=10% Similarity=0.002 Sum_probs=182.3
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCC--
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP-- 1617 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~-- 1617 (1810)
.++.++|...+++++..+|++.. |..++..+...|+.++|...|+++++..|... .+|..++.++...+.+.
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~-----~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ-----QYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHHH
Confidence 34477788888888888888888 88888888888888888888888887666432 35555555554433210
Q ss_pred ------------------------------------------HHHHHHHHHHHHhcC---CCH-----HHHHHHHHHHHH
Q 000236 1618 ------------------------------------------EEAVVKVFQRALQYC---DPK-----KVHLALLGLYER 1647 (1810)
Q Consensus 1618 ------------------------------------------~e~a~~vferAl~~~---~~~-----~i~~~l~~~~~~ 1647 (1810)
.++|.+.|+++++.. |.. ..++..+..+..
T Consensus 170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 023444444555332 111 122221223346
Q ss_pred hCChHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHH
Q 000236 1648 TEQNKLADELLYKMIKKF---KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVAD 1721 (1810)
Q Consensus 1648 ~g~~~~A~~~~e~~lk~~---~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~--~~~~~~~~a~l~~~~g~~e 1721 (1810)
.+++++|+..|+++++.. |.....| ++..++.. ++++|..+|+++++..|... ....+..++..+.+.|+++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 688888888888888764 3334445 47788888 99999999999888776541 2356677777778889999
Q ss_pred HHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000236 1722 RGRSMFEGILSEYPK---------------RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1786 (1810)
Q Consensus 1722 ~Ar~lfe~al~~~P~---------------~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~ 1786 (1810)
+|..+|+++....|. ...++..++.++...|+.++|+.+|++++. ..|.+. .+|...+....
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~-~l~~~lA~l~~ 404 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQ-GLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHH
Confidence 999999999888763 234667788888899999999999999998 667777 69999999999
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 000236 1787 SVGEEERIEYVKQKAMEY 1804 (1810)
Q Consensus 1787 ~~G~~~~a~~v~~rAl~~ 1804 (1810)
..|+.++|..++++|++.
T Consensus 405 ~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 405 ARGWPRAAENELKKAEVL 422 (765)
T ss_pred hcCCHHHHHHHHHHHHhh
Confidence 999999999999999874
No 68
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.37 E-value=1.5e-12 Score=119.94 Aligned_cols=71 Identities=25% Similarity=0.386 Sum_probs=66.5
Q ss_pred CCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCc---ccCcCCCCEEEEEEEEeeCCCCeEEEe
Q 000236 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL---SKTYYVGQSVRSNILDVNSETGRITLS 704 (1810)
Q Consensus 634 ~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~---~~~~~~Gq~V~~~V~~vd~~~~rl~lS 704 (1810)
+++|+.+.|+|.+++++|+||++.+++.||+|.++++|.++.+| .+.|++||.|+|+|+++|++++|+.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSSSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCCCCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 46899999999999999999999999999999999999987775 488999999999999999999999886
No 69
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.36 E-value=2.9e-10 Score=154.64 Aligned_cols=250 Identities=11% Similarity=0.008 Sum_probs=111.6
Q ss_pred CCCcHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000236 1543 APRTPDEFERLVRSSP-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1621 (1810)
Q Consensus 1543 ~~~a~~~fer~l~~~P-~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a 1621 (1810)
..+|...|+++..... -+...|..++..+.+.|++++|.++|+++...-- ..+ ...|..++..+.+.+ ..+.|
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv-~PD---~vTYnsLI~a~~k~G--~~deA 561 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV-KPD---RVVFNALISACGQSG--AVDRA 561 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHHHHCC--CHHHH
Confidence 3344444444443221 2345555555555555555555555555442110 001 234555555555555 33555
Q ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Q 000236 1622 VKVFQRALQY----CDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1695 (1810)
Q Consensus 1622 ~~vferAl~~----~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~-~~~~~~w~~~a~~~~~~-~~~~A~~ll~ral 1695 (1810)
.++|+++... .|....|..++..|.+.|++++|.++|++|.+.. +.+...|..++..|.+. ++++|.++|+++.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5555555431 2333445555555555555555555555554432 33444455555555544 5555555555544
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000236 1696 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1774 (1810)
Q Consensus 1696 k~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~-P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~ 1774 (1810)
+.--.. ....|..++..+.+.|++++|..+|+.+.+.. +.+...|+.++..+.+.|+++.|..+|+.+....+.|+.
T Consensus 642 ~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv- 719 (1060)
T PLN03218 642 KKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV- 719 (1060)
T ss_pred HcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-
Confidence 431110 12344444444444444444444444444332 223344444444444444444444444444432233322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000236 1775 KFLFKKYLEYEKSVGEEERIEYVKQKA 1801 (1810)
Q Consensus 1775 ~~lw~~yl~~E~~~G~~~~a~~v~~rA 1801 (1810)
..|+..+....+.|+.++|..+|+++
T Consensus 720 -vtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 720 -STMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 24444444444444444444444443
No 70
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.35 E-value=1.7e-12 Score=126.74 Aligned_cols=90 Identities=41% Similarity=0.613 Sum_probs=74.3
Q ss_pred cCcCcEEEEEEEEEecccEEEEcCCCcEEEEeccccCChhccc----------cccccccCCCCCcccCCCEEEEEEEEe
Q 000236 6 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDN----------EIEANEDNLLPTIFHVGQLVSCIVLQL 75 (1810)
Q Consensus 6 l~~G~~~lg~V~~i~~~~~~v~lp~~l~g~v~~~~is~~~~~~----------~~~~~~~~~l~~~f~~Gq~v~~~V~~~ 75 (1810)
|++||.++|+|.+|++.++.|+||+++.|+||++++|+.|... ...+.+...+.++|++||.|+|+|+++
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~~ 80 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSL 80 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEECCCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEEc
Confidence 6899999999999999999999999999999999999874111 011122346789999999999999999
Q ss_pred eccccccCeeEEEEEechhhhc
Q 000236 76 DDDKKEIGKRKIWLSLRLSLLY 97 (1810)
Q Consensus 76 ~~~~~~~~~~~~~LS~~p~~vn 97 (1810)
++.++ ++++|.||++|+.||
T Consensus 81 d~~~~--~~~~i~LSlr~~~vn 100 (100)
T cd05693 81 DKSKS--GKKRIELSLEPELVN 100 (100)
T ss_pred cCCcC--CCcEEEEEecHHHCC
Confidence 87632 146899999999998
No 71
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.35 E-value=3.8e-12 Score=117.06 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=65.9
Q ss_pred cCCCCCEEEEEEEEEecCeEEEEEC-CCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000236 633 HIHPNSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709 (1810)
Q Consensus 633 ~~~~G~~~~G~V~~i~~~G~fV~f~-~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~ 709 (1810)
+++.|++++|+|++|+++|+||+|. +|++||+|++++++. +.|++||.+.|+|+++|++++++.||+|++.
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~------~~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~~ 72 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNF------SKLKVGQLLLCVVEKVKDDGRVVSLSADPSK 72 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCcc------cccCCCCEEEEEEEEEECCCCEEEEEEeecc
Confidence 4789999999999999999999995 699999999999875 6799999999999999999999999999764
No 72
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.33 E-value=2.9e-12 Score=117.88 Aligned_cols=71 Identities=46% Similarity=0.774 Sum_probs=64.9
Q ss_pred cccCCcEEEEEEEEEecceEEEEeCCCcceecccCCCCCCCCCCccCCCcEEEEEEEEEcCCCcEEEEccCcc
Q 000236 104 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 176 (1810)
Q Consensus 104 ~l~~g~~l~~~V~sved~G~i~d~G~~~~~gfl~~~~~~~~~~~~~~~G~~~~~~v~~~~~~~~~v~ls~~~~ 176 (1810)
+|.+|+++.|+|+||+||||+|+||+.+++||||+++++.. ..+++||.+.|.|++++..++.+.||+.+.
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~--~~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~ 71 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNF--SKLKVGQLLLCVVEKVKDDGRVVSLSADPS 71 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCcc--cccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 58899999999999999999999999999999999998643 379999999999999999999999998543
No 73
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.33 E-value=3.2e-10 Score=137.65 Aligned_cols=250 Identities=16% Similarity=0.229 Sum_probs=192.2
Q ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 000236 1545 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1624 (1810)
Q Consensus 1545 ~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~v 1624 (1810)
..+..|...|...|.....|.+||.++.+.|..+.+.++|+|++..+|.+- .+|+.|+++...... +++..+..
T Consensus 63 ~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Sv-----dlW~~Y~~f~~n~~~-d~~~lr~~ 136 (577)
T KOG1258|consen 63 ALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSV-----DLWLSYLAFLKNNNG-DPETLRDL 136 (577)
T ss_pred HHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHhccCC-CHHHHHHH
Confidence 345578888899999999999999999999999999999999999999644 699999999876543 67889999
Q ss_pred HHHHHhcCCCH----HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh------c----------
Q 000236 1625 FQRALQYCDPK----KVHLALLGLYERTEQNKLADELLYKMIKKFKHS-CKVWLRRVQRLLKQ------Q---------- 1683 (1810)
Q Consensus 1625 ferAl~~~~~~----~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~-~~~w~~~a~~~~~~------~---------- 1683 (1810)
|++|..++... .+|-.|+.+...+.+......+|++.+..-.+. ...+.+|-+++.++ .
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 99999998753 999999999988888999999999988643221 11122222222210 0
Q ss_pred ------------------------------HHHHH------------------------HHHHHHHHhCCC-------CC
Q 000236 1684 ------------------------------QEGVQ------------------------AVVQRALLSLPR-------HK 1702 (1810)
Q Consensus 1684 ------------------------------~~~A~------------------------~ll~ralk~~p~-------~~ 1702 (1810)
.+++. ..|+..++. |. ..
T Consensus 217 ~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikr-pYfhvkpl~~a 295 (577)
T KOG1258|consen 217 VAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKR-PYFHVKPLDQA 295 (577)
T ss_pred HHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccc-cccccCcccHH
Confidence 11111 111111111 11 11
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000236 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782 (1810)
Q Consensus 1703 ~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl 1782 (1810)
....|..|+.++...|+.++..-+|++++--+..-..+|..|+.++...|+.+-|..++.++.. -.-++.. .+-..|.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~-i~~k~~~-~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK-IHVKKTP-IIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh-hcCCCCc-HHHHHHH
Confidence 2578999999999999999999999999887777788999999999988999999999999988 2333444 6888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 000236 1783 EYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1783 ~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
.||+..||+..|+.++++..+
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHh
Confidence 999999999999999988764
No 74
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=2.5e-11 Score=147.75 Aligned_cols=213 Identities=17% Similarity=0.156 Sum_probs=187.9
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 000236 1551 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1630 (1810)
Q Consensus 1551 er~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~ 1630 (1810)
..++..+|+++..|-..+.++-.+++.+.|...|+||+...|... +.+..+..-..... ..|.|...|+.|+.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa-----YayTLlGhE~~~~e--e~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA-----YAYTLLGHESIATE--EFDKAMKSFRKALG 483 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc-----hhhhhcCChhhhhH--HHHhHHHHHHhhhc
Confidence 456678899999999999999999999999999999997655211 22333333333444 45999999999999
Q ss_pred cCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHH
Q 000236 1631 YCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1708 (1810)
Q Consensus 1631 ~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~ 1708 (1810)
..|.. +.|+-++.+|.+.++++.|.-.|++|+.+.|.+..+...++.++.+. +.++|.++|++|+...|++. -..+
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~--l~~~ 561 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP--LCKY 561 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc--hhHH
Confidence 99986 99999999999999999999999999999999999999999999999 99999999999999999984 5678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000236 1709 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1774 (1810)
Q Consensus 1709 ~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~ 1774 (1810)
..|.+++..+++++|...||.+-+.-|+...++...+..+.+.|+.+.|..-|--|+. +.|+-.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg~ 625 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKGA 625 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCccc
Confidence 8899999999999999999999999999999999999999999999999999999998 666544
No 75
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.32 E-value=1.5e-11 Score=145.30 Aligned_cols=140 Identities=24% Similarity=0.293 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCC-hHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000236 1601 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQ-NKLADELLYKMIKKFKHSCKVWLRRVQR 1678 (1810)
Q Consensus 1601 ~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~~~~~~g~-~~~A~~~~e~~lk~~~~~~~~w~~~a~~ 1678 (1810)
.+|++||++..+.+ ..+.||.+|++|++..+. ..+|.++|.++...++ .+.|..+|+++++.|+.+..+|+.|++|
T Consensus 2 ~v~i~~m~~~~r~~--g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTE--GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 47999999999998 679999999999966554 4999999999888555 4559999999999999999999999999
Q ss_pred HHHh-cHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000236 1679 LLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742 (1810)
Q Consensus 1679 ~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~ 1742 (1810)
+... +.+.||.+|+|++..+|... ...+|..|+++|.+.|+.+.++.+++|+...+|....++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999 99999999999999998876 5689999999999999999999999999999999766554
No 76
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.32 E-value=4.6e-12 Score=116.64 Aligned_cols=70 Identities=27% Similarity=0.464 Sum_probs=66.5
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCccc--ccCcccccCCCCEEEEEEEEEecCCCeeEEeec
Q 000236 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414 (1810)
Q Consensus 1344 G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~--~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk 1414 (1810)
|++|.|+|+++.++|+||+|++ +++|+||++++++.. .+++.+.|++||.|+++|+++|++++||.||+|
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~-~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISP-DVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCC-CcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7899999999999999999987 899999999999864 788999999999999999999999999999986
No 77
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.31 E-value=4.5e-12 Score=120.62 Aligned_cols=79 Identities=47% Similarity=0.685 Sum_probs=75.3
Q ss_pred CCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEee
Q 000236 627 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705 (1810)
Q Consensus 627 ~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSl 705 (1810)
++..++++++|+++.|+|++++++|+||++.+++.||+|.+++++.+..++.+.|++||+|+|+|+++|++++++.|||
T Consensus 5 l~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 5 LPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred chhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 5567888999999999999999999999999999999999999999999999999999999999999999999999986
No 78
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.30 E-value=7.7e-12 Score=115.16 Aligned_cols=70 Identities=30% Similarity=0.565 Sum_probs=67.1
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcc--cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000236 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323 (1810)
Q Consensus 1254 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~--~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk 1323 (1810)
|++|.|+|+++.++|+||+|+++++|++|+++++|.. .++|.+.|++||.|+|+|+++|+++++|.||+|
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7899999999999999999999999999999999864 789999999999999999999999999999986
No 79
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.30 E-value=1.1e-09 Score=149.04 Aligned_cols=253 Identities=9% Similarity=0.023 Sum_probs=205.8
Q ss_pred cCCCCcHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000236 1541 KDAPRTPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~-P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e 1619 (1810)
++...+...|+++.... +.+...|..++..+.+.|+++.|+.+|+++.+.-...+ ...|..++..+.+.| +.+
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd----vvTynaLI~gy~k~G--~~e 524 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN----VHTFGALIDGCARAG--QVA 524 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCc--CHH
Confidence 34667777888877643 34678899999999999999999999999885321111 468999999999999 569
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHh-cHHHHHHHHHH
Q 000236 1620 AVVKVFQRALQY--CDPKKVHLALLGLYERTEQNKLADELLYKMIKK---FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1693 (1810)
Q Consensus 1620 ~a~~vferAl~~--~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~---~~~~~~~w~~~a~~~~~~-~~~~A~~ll~r 1693 (1810)
+|.++|+++.+. .|....|..++..|.+.|++++|.++|++|... ...+...|..+...|.+. ++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998754 356688999999999999999999999999763 245677888899999989 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 000236 1694 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1771 (1810)
Q Consensus 1694 alk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~--~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p 1771 (1810)
+.+..... ....|..++..+.+.|++++|..+|+.+.+. .| +...|..+++.+.+.|+++.|..+|+.+....+.|
T Consensus 605 M~e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 605 IHEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 98865332 2578999999999999999999999998866 34 46788999999999999999999999999866666
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1772 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1772 ~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
.. ..|...+....+.|+.++|..+|++..+
T Consensus 683 d~--~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 683 GT--VSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred CH--HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 54 4899999999999999999999987753
No 80
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.29 E-value=4.9e-10 Score=132.44 Aligned_cols=243 Identities=18% Similarity=0.228 Sum_probs=176.1
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 000236 1551 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1630 (1810)
Q Consensus 1551 er~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~ 1630 (1810)
++.+..||++...|..++..+..+ -++++|+.||+.+..+|+.. ..|..|+..+.+..+ .+..+.+|.|+|.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~-----r~W~~yi~~El~skd--fe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSP-----RAWKLYIERELASKD--FESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCc-----HHHHHHHHHHHHhhh--HHHHHHHHHHHHH
Confidence 556788999999999999988777 99999999999999999765 589999999888884 4888889988886
Q ss_pred cCCCHHH------------------------------------------HHHHHHHH---------HHhCChHHHHHHHH
Q 000236 1631 YCDPKKV------------------------------------------HLALLGLY---------ERTEQNKLADELLY 1659 (1810)
Q Consensus 1631 ~~~~~~i------------------------------------------~~~l~~~~---------~~~g~~~~A~~~~e 1659 (1810)
..-.-.+ |..|++++ +...+.+..+.+|+
T Consensus 82 kvLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYq 161 (656)
T KOG1914|consen 82 KVLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQ 161 (656)
T ss_pred HHhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 5433344 44444432 33446666778888
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHh--------------cHHHHHHHHHHHHHhC----------CC------CChHHHHH
Q 000236 1660 KMIKKF-KHSCKVWLRRVQRLLKQ--------------QQEGVQAVVQRALLSL----------PR------HKHIKFIS 1708 (1810)
Q Consensus 1660 ~~lk~~-~~~~~~w~~~a~~~~~~--------------~~~~A~~ll~ralk~~----------p~------~~~~~~~~ 1708 (1810)
+|+..- .+-.++|..|..|+... .+..|++.++.....- |. .+.+++|.
T Consensus 162 ral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~ 241 (656)
T KOG1914|consen 162 RALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWK 241 (656)
T ss_pred HHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHH
Confidence 877643 34567788877776543 2556666666533211 11 12357899
Q ss_pred HHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHh
Q 000236 1709 QTAILEFKNGV--------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD--------------VDLIRGLFERAIS 1766 (1810)
Q Consensus 1709 ~~a~l~~~~g~--------~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd--------------~e~ar~lferal~ 1766 (1810)
+|+.++..++- ..|..-.|+++|...+-.+++|..|.+++...++ .++++.+|||++.
T Consensus 242 n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 242 NWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred HHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 99999886542 3466667899999999999999999998887766 6789999999998
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Q 000236 1767 LSLPPKKMKFLFKKYLEYEKSVGE---EERIEYVKQKAME 1803 (1810)
Q Consensus 1767 ~~~~p~~~~~lw~~yl~~E~~~G~---~~~a~~v~~rAl~ 1803 (1810)
... +..+.++..|.++|+..-+ .+.+...+++++.
T Consensus 322 -~l~-~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~ 359 (656)
T KOG1914|consen 322 -GLL-KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLK 359 (656)
T ss_pred -HHH-HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHh
Confidence 222 3344688888888776555 6666677776654
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=8.5e-10 Score=132.24 Aligned_cols=207 Identities=13% Similarity=0.050 Sum_probs=161.1
Q ss_pred cHHHHHHHHHcC---C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000236 1546 TPDEFERLVRSS---P-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1621 (1810)
Q Consensus 1546 a~~~fer~l~~~---P-~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a 1621 (1810)
++..+.++|... | +.+..|...+..+...|+.+.|+..|+++++..|.. ...|..+...+...| +.+.|
T Consensus 45 ~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~~~~~g--~~~~A 117 (296)
T PRK11189 45 ILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-----ADAYNYLGIYLTQAG--NFDAA 117 (296)
T ss_pred HHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCC--CHHHH
Confidence 344556666433 3 347889999999999999999999999999876642 468999999999999 56999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCC
Q 000236 1622 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1699 (1810)
Q Consensus 1622 ~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p 1699 (1810)
.+.|++|++..|.. ..|..++.++...|++++|.+.|+++++..|+++.. ..+..+.... ++++|...|++++...+
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 99999999999975 899999999999999999999999999999988631 1122223334 89999999988776553
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1700 RHKHIKFISQTAILEFKNGVADRGRSMFEGIL-------SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1700 ~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al-------~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
.. .|. ++...+..|+...+ ..|+.+. ...|+..+.|..++..+.+.|+++.|+..|++|+.
T Consensus 197 ~~----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 197 KE----QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred cc----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 233 34555556665444 2444444 44455667999999999999999999999999999
No 82
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.27 E-value=1.3e-11 Score=113.56 Aligned_cols=70 Identities=30% Similarity=0.558 Sum_probs=67.4
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeec
Q 000236 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk 706 (1810)
|+++.|+|++++++|+||+|++++.||+|.++++++++.+|.+.|++||+++|+|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECCCCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7899999999999999999999999999999999888899999999999999999999999999999985
No 83
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=99.26 E-value=2.8e-11 Score=112.63 Aligned_cols=73 Identities=37% Similarity=0.625 Sum_probs=70.7
Q ss_pred CCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeec
Q 000236 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706 (1810)
Q Consensus 634 ~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk 706 (1810)
+++|+++.|+|+++.++|+||++.+++.||+|.+++++.+..++...|++||+|+|+|+++|++++++.||+|
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999986
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=5.4e-09 Score=117.05 Aligned_cols=224 Identities=14% Similarity=0.198 Sum_probs=190.1
Q ss_pred HhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCC
Q 000236 1538 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1617 (1810)
Q Consensus 1538 ~~~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~ 1617 (1810)
+++..+..|++.|-.++..+|...++...++..+.+.|+.|+|..+-+..+..... ....|+..-.++..-+...|-
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl-T~~qr~lAl~qL~~Dym~aGl-- 122 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL-TFEQRLLALQQLGRDYMAAGL-- 122 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHHHHhhh--
Confidence 45666899999999999999999999999999999999999999999888865444 334556667778888888884
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHh-cHHHHHHH
Q 000236 1618 EEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-----KVWLRRVQRLLKQ-QQEGVQAV 1690 (1810)
Q Consensus 1618 ~e~a~~vferAl~~~~~-~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~-----~~w~~~a~~~~~~-~~~~A~~l 1690 (1810)
.+.|+.+|......-.. .+....++.+|......++|.+.-+++.+..++.. ..+..+|+-+... +.++|+.+
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 49999999988764333 48899999999999999999999999998776543 3445566656666 89999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1691 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-DLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1691 l~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~-~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
+++|++.+|++ +.+-+.+++++...|+++.|...++++++.+|.-. .+...+...|.+.|+++.++.-+.+++.
T Consensus 203 l~kAlqa~~~c--vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 203 LKKALQADKKC--VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHhhCccc--eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999998 47888899999999999999999999999999864 4777888888999999999999999998
No 85
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.23 E-value=2.5e-11 Score=111.66 Aligned_cols=71 Identities=23% Similarity=0.399 Sum_probs=66.4
Q ss_pred CCCCcEEEEEEEEEee-ceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeec
Q 000236 1341 LHVGDIVIGQIKRVES-YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~-~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk 1414 (1810)
+++|++|.|+|+++.+ +|+||+|.+ +.+|++|+|+++++++.++.+.|++||.|+|+|+++|. +||.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~-~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPF-GKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCC-CCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4789999999999986 899999986 89999999999999999999999999999999999984 99999986
No 86
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.9e-09 Score=127.06 Aligned_cols=258 Identities=18% Similarity=0.278 Sum_probs=180.3
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCC-----
Q 000236 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP----- 1616 (1810)
Q Consensus 1543 ~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~-~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~----- 1616 (1810)
.-+-...|.++|..+|+++.+|+.-|.++...+ +++.||++|.|+|+..|..+ .+|..|..+++++.+.
T Consensus 121 ~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp-----~Lw~eyfrmEL~~~~Kl~~rr 195 (568)
T KOG2396|consen 121 YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSP-----KLWKEYFRMELMYAEKLRNRR 195 (568)
T ss_pred hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 344556899999999999999999999987666 49999999999998877433 4899988888765420
Q ss_pred -----C--------------------------------------------------------------------------
Q 000236 1617 -----P-------------------------------------------------------------------------- 1617 (1810)
Q Consensus 1617 -----~-------------------------------------------------------------------------- 1617 (1810)
+
T Consensus 196 ~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~ 275 (568)
T KOG2396|consen 196 EELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELE 275 (568)
T ss_pred HHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHH
Confidence 0
Q ss_pred ----------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----------------------------
Q 000236 1618 ----------------------EEAVVKVFQRALQYCDPKKVHLALLGLYE----------------------------- 1646 (1810)
Q Consensus 1618 ----------------------~e~a~~vferAl~~~~~~~i~~~l~~~~~----------------------------- 1646 (1810)
.+...++|+.|++..+...+|..|+.++.
T Consensus 276 i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~ 355 (568)
T KOG2396|consen 276 ILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSE 355 (568)
T ss_pred HHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccc
Confidence 23333445555555555556655554221
Q ss_pred -----------HhCChHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHh--cHHHHHHHHHHHHHhCCCCCh---------
Q 000236 1647 -----------RTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKH--------- 1703 (1810)
Q Consensus 1647 -----------~~g~~~~A~~~~e~~l-k~~~~~~~~w~~~a~~~~~~--~~~~A~~ll~ralk~~p~~~~--------- 1703 (1810)
......+|+..-.++. ..|.++.++|..+.+.+.+. +++--...+--.++..+...+
T Consensus 356 ~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~ 435 (568)
T KOG2396|consen 356 CLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASE 435 (568)
T ss_pred chHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhh
Confidence 1112234444444444 35668889999888877744 221111111112222222222
Q ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CChHHH
Q 000236 1704 ------------------------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLI 1757 (1810)
Q Consensus 1704 ------------------------~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~--gd~e~a 1757 (1810)
..+-..|-.++++.+-+..||..|.++...-|-+.+++-..+++|..+ -+...+
T Consensus 436 ~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~ 515 (568)
T KOG2396|consen 436 GDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANI 515 (568)
T ss_pred ccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHH
Confidence 234445555666777899999999999999999999999999999643 468899
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000236 1758 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1808 (1810)
Q Consensus 1758 r~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~~~ 1808 (1810)
|.+|++|+. ....+. .+|..|+.+|..+|..+.+-.+|.||++-++-.
T Consensus 516 r~~yd~a~~--~fg~d~-~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 516 REYYDRALR--EFGADS-DLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHHH--HhCCCh-HHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 999999999 443556 799999999999999999999999999988753
No 87
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.22 E-value=3.3e-11 Score=110.83 Aligned_cols=71 Identities=28% Similarity=0.409 Sum_probs=67.1
Q ss_pred CCCCCEEEEEEEEEee-ceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000236 1251 LSPNMIVQGYVKNVTS-KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323 (1810)
Q Consensus 1251 l~~G~~v~G~V~~v~~-~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk 1323 (1810)
+++|+++.|+|+++.+ +|+||+++++.+|++|+++++|+|..+|.+.|++||.|+|+|++++. +++.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPFGKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCCCCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4689999999999986 89999999999999999999999999999999999999999999984 99999986
No 88
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.21 E-value=3.8e-11 Score=110.10 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=65.7
Q ss_pred CCEEE-EEEEEE-ecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEee
Q 000236 637 NSVVH-GYVCNI-IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705 (1810)
Q Consensus 637 G~~~~-G~V~~i-~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSl 705 (1810)
|+++. |.|+++ .++|+||++.+|+.||+|.|++++++.+++.+.|++||.++|+|+++|+.++++.|||
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKDGLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCCCCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 67888 999998 7999999999999999999999999999999999999999999999999999999996
No 89
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.21 E-value=1.7e-09 Score=136.01 Aligned_cols=227 Identities=11% Similarity=0.100 Sum_probs=179.4
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCc-cchhhH--HHHHHHHHHH
Q 000236 1533 AAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEK--LNIWVAYFNL 1609 (1810)
Q Consensus 1533 ~~e~~~~~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~-~~e~e~--~~lW~~yl~l 1609 (1810)
..+..+..++.+.|...+++++..+|+++.++..++..+++.++++.|.+.+++.++.-.. ..+... ...|..++..
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3444444566889999999999999999999999999999999999999999999976322 121111 1344444422
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH--HHh
Q 000236 1610 ENEYGNPPEEAVVKVFQRALQYCD-----PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL--LKQ 1682 (1810)
Q Consensus 1610 e~~~g~~~~e~a~~vferAl~~~~-----~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~--~~~ 1682 (1810)
+ ..+...+.++++.+..| ...++..++..+...|++++|.+.++++++++|++....+.....+ ...
T Consensus 239 ----~--~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 239 ----A--MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred ----H--HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC
Confidence 2 11334566777777777 3499999999999999999999999999999998876432222222 223
Q ss_pred -cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 000236 1683 -QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE--GILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1759 (1810)
Q Consensus 1683 -~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe--~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~ 1759 (1810)
+.+.+.+.++++++..|.+..+.+...+|+++++.|++++|+..|+ .+++..|+... +..++.++.+.|+.+.|+.
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence 7889999999999999998544788899999999999999999999 57778898766 5599999999999999999
Q ss_pred HHHHHHh
Q 000236 1760 LFERAIS 1766 (1810)
Q Consensus 1760 lferal~ 1766 (1810)
+|++++.
T Consensus 392 ~~~~~l~ 398 (409)
T TIGR00540 392 MRQDSLG 398 (409)
T ss_pred HHHHHHH
Confidence 9999876
No 90
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=99.21 E-value=6.4e-11 Score=110.28 Aligned_cols=73 Identities=30% Similarity=0.517 Sum_probs=71.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000236 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323 (1810)
Q Consensus 1251 l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk 1323 (1810)
+++|+++.|+|+++.++|+||+++.+++|++|++++++.+..++...|++||.++|+|+++|++++++.||+|
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999986
No 91
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.19 E-value=7.7e-11 Score=109.34 Aligned_cols=73 Identities=22% Similarity=0.504 Sum_probs=68.9
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeec
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk 1414 (1810)
+++|+++.|+|+++.++|+||+|++ +++|++|++++++++..++.+.|++||.++++|+++|+++++|.||+|
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~-~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGN-KVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCC-CcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4789999999999999999999986 799999999999998888889999999999999999999999999985
No 92
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.19 E-value=1e-10 Score=108.55 Aligned_cols=73 Identities=25% Similarity=0.406 Sum_probs=69.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000236 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323 (1810)
Q Consensus 1251 l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk 1323 (1810)
+++|+++.|+|++++++|+||+|+++++|++|+++++|+|..++.+.|++||.++++|+++|++++++.||+|
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4689999999999999999999999999999999999999888889999999999999999999999999985
No 93
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=99.19 E-value=6.9e-11 Score=109.25 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=65.1
Q ss_pred CCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEee
Q 000236 1342 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413 (1810)
Q Consensus 1342 ~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lsl 1413 (1810)
..|++++|+|+++.+||+||+|.+...+||+|+|++++.++.++.+.|++||.|+++|+++|.++ ||+||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 58999999999999999999995323799999999999999999999999999999999999865 999986
No 94
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.19 E-value=5.6e-11 Score=108.83 Aligned_cols=69 Identities=26% Similarity=0.473 Sum_probs=66.3
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEee
Q 000236 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSl 705 (1810)
|+++.|+|+++.++|+||++.+++.||+|.+++++.+..++.+.|++||+++|+|+++|++++++.||+
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecCCcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 789999999999999999999999999999999998888899999999999999999999999999985
No 95
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.19 E-value=6.1e-11 Score=108.75 Aligned_cols=69 Identities=25% Similarity=0.468 Sum_probs=65.4
Q ss_pred CcEEE-EEEEEE-eeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEee
Q 000236 1344 GDIVI-GQIKRV-ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413 (1810)
Q Consensus 1344 G~~v~-G~V~~i-~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lsl 1413 (1810)
|++|+ |+|+++ .+||+||+|.+ +++|++|+|++++.+.+++.+.|++||.++++|+++|+++++|.||+
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~-gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKD-GLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCC-CCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 78899 999999 69999999987 79999999999999988899999999999999999999999999986
No 96
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.18 E-value=3.3e-09 Score=133.73 Aligned_cols=255 Identities=13% Similarity=0.105 Sum_probs=180.4
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000236 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1622 (1810)
Q Consensus 1543 ~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~ 1622 (1810)
...|.+.|...+..+|+|....+--|.+....+++-.|..+|.+|+...|.... ...+....+.+.++ ..+.|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a----D~rIgig~Cf~kl~--~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKA----DVRIGIGHCFWKLG--MSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC----CccchhhhHHHhcc--chhhHH
Confidence 356777888888888888888888888888888888888888888876554322 23333334445566 447778
Q ss_pred HHHHHHHhcCCCH-HHHHHH-------------------------------------HHHHHHhCChHHHHHHHHHHHHh
Q 000236 1623 KVFQRALQYCDPK-KVHLAL-------------------------------------LGLYERTEQNKLADELLYKMIKK 1664 (1810)
Q Consensus 1623 ~vferAl~~~~~~-~i~~~l-------------------------------------~~~~~~~g~~~~A~~~~e~~lk~ 1664 (1810)
..|+||++++|.. ..+..+ ++.|.-.++|+.+..+++.+++.
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 8888888877643 333333 33444556666666666666654
Q ss_pred cCC---CHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 000236 1665 FKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1740 (1810)
Q Consensus 1665 ~~~---~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~l 1740 (1810)
.-. -...++.+|..+..+ ++++|..+|..+++..|.+ ++-.++.++|++...|+++.|...|++.+..+|++.+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 322 234477778888888 8888888888888888776 45667788888888888888888888888888888887
Q ss_pred HHHHHHHHHHcC----ChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000236 1741 WSIYLDQEIRLG----DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1808 (1810)
Q Consensus 1741 w~~ya~~e~k~g----d~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~~~ 1808 (1810)
...++.++...+ ..+.|..+..+++. ..|... ..|....++.+ .+|......+|.+|+..+++.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~~d~-~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLE--QTPVDS-EAWLELAQLLE-QTDPWASLDAYGNALDILESK 446 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--cccccH-HHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHc
Confidence 777777776554 56778888888887 556666 57777666654 455555588999998777654
No 97
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.18 E-value=5e-11 Score=108.82 Aligned_cols=68 Identities=31% Similarity=0.503 Sum_probs=65.6
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEe
Q 000236 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lS 704 (1810)
|+++.|+|++++++|+||+|.+++.||+|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCCCCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 78899999999999999999999999999999999999999999999999999999999999999886
No 98
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.18 E-value=6.9e-11 Score=112.48 Aligned_cols=78 Identities=33% Similarity=0.535 Sum_probs=73.6
Q ss_pred ccccccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEE
Q 000236 1245 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322 (1810)
Q Consensus 1245 ~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSl 1322 (1810)
+..+.++++|+++.|+|+++.++|+||+++++++|++|++++++++..+|.+.|++||.|+|+|+++|.+++++.||+
T Consensus 6 ~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 6 PTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred hhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 445677999999999999999999999999999999999999999999999999999999999999999999999986
No 99
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=4.1e-09 Score=126.39 Aligned_cols=219 Identities=14% Similarity=0.065 Sum_probs=169.6
Q ss_pred CCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHH
Q 000236 1575 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKL 1653 (1810)
Q Consensus 1575 ~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~ 1653 (1810)
...+.+..-+.+++...+... ..+...|.....++...| ..+.|...|++|++..|.. ..|..++.++...|++++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~-~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTD-EERAQLHYERGVLYDSLG--LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred hHHHHHHHHHHHHHccccCCc-HhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 466778888888886544322 234578999999999999 5699999999999999986 999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1654 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1732 (1810)
Q Consensus 1654 A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~ 1732 (1810)
|.+.|+++++..|+...+|..++..+... ++++|.+.|+++++..|.+....+|. .+....+++++|...|++++.
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~---~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL---YLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 99999999999999999874323333 333456799999999988775
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000236 1733 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1804 (1810)
Q Consensus 1733 ~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~-----~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~ 1804 (1810)
..+. +.|. +.......|+...+ ..|+.+... .+.|+.. ..|........+.|+.++|...|++|++.
T Consensus 194 ~~~~--~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~-ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 194 KLDK--EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLC-ETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred hCCc--cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5433 3444 23444556666554 345555531 1223333 46777777888999999999999999864
No 100
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.17 E-value=7.6e-11 Score=108.42 Aligned_cols=70 Identities=37% Similarity=0.543 Sum_probs=66.8
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeec
Q 000236 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414 (1810)
Q Consensus 1344 G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk 1414 (1810)
|+++.|+|+++.++|+||+|.+ ++.||+|+|++++++..++.+.|++||.++++|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~-~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYN-NVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECC-CCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7899999999999999999986 799999999999998889999999999999999999999999999986
No 101
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.6e-09 Score=126.54 Aligned_cols=230 Identities=17% Similarity=0.134 Sum_probs=183.1
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 000236 1552 RLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1631 (1810)
Q Consensus 1552 r~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~ 1631 (1810)
+++...|+++..|+..+-+++..+.+.+||..|.+|....|... ..|++|+..+...++ -|.|...|.+|-+.
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg-----paWl~fghsfa~e~E--hdQAmaaY~tAarl 375 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG-----PAWLAFGHSFAGEGE--HDQAMAAYFTAARL 375 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc-----HHHHHHhHHhhhcch--HHHHHHHHHHHHHh
Confidence 55567899999999999999999999999999999986555322 479999988888884 48899999999998
Q ss_pred CCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCC----C-ChH
Q 000236 1632 CDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR----H-KHI 1704 (1810)
Q Consensus 1632 ~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~----~-~~~ 1704 (1810)
.+.- .-.+-++.-|.+++.++-|...|..++.++|.++-+...++-..+.. .+.+|..+|+.++...+. . ...
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 8875 33444455567789999999999999999999999888888888888 899999999998843222 1 124
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh--HHHHHHHHH
Q 000236 1705 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK--MKFLFKKYL 1782 (1810)
Q Consensus 1705 ~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~--~~~lw~~yl 1782 (1810)
++|.++|..+.+++.+++|...|+++|...|++..++...+-++...|+++.|.+.|-++|. +.|.+ ...+.+.++
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999888888899999999999999998 55555 334555555
Q ss_pred HH-HHHcCC
Q 000236 1783 EY-EKSVGE 1790 (1810)
Q Consensus 1783 ~~-E~~~G~ 1790 (1810)
+- +...|.
T Consensus 534 e~~~~~~~~ 542 (611)
T KOG1173|consen 534 EDSECKSGV 542 (611)
T ss_pred Hhhhhhccc
Confidence 44 444443
No 102
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.17 E-value=9.5e-11 Score=107.31 Aligned_cols=69 Identities=28% Similarity=0.622 Sum_probs=65.8
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEee
Q 000236 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413 (1810)
Q Consensus 1344 G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lsl 1413 (1810)
|+++.|+|+++.++|+||+|++ +++|++|++++++.+..++.+.|++||.++++|+++|+++++|.||+
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSD-HIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecC-CcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 7899999999999999999986 79999999999999888888999999999999999999999999985
No 103
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.1e-09 Score=128.46 Aligned_cols=252 Identities=11% Similarity=0.049 Sum_probs=219.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e 1619 (1810)
..++.+.-+.++.++..+|-+.....-+++++...|+..+-..+..+.++..|..+ --|++.+-++...+++ .
T Consensus 257 ~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a-----~sW~aVg~YYl~i~k~--s 329 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA-----LSWFAVGCYYLMIGKY--S 329 (611)
T ss_pred cChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC-----cchhhHHHHHHHhcCc--H
Confidence 45577777888899999999988888888899999999999999999999888654 4799999999999966 9
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHh
Q 000236 1620 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1697 (1810)
Q Consensus 1620 ~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~ 1697 (1810)
+||..|-+|....+.. ..|+.++..|.-.+..++|...|.+|-+.++....-.+-++-=|.++ .++.|.+.|.+|+..
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999986 99999999999999999999999999999988777777777777778 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 000236 1698 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE----YPK---RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1770 (1810)
Q Consensus 1698 ~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~----~P~---~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~ 1770 (1810)
.|... -+.-..|-+.+..+.+.+|..+|+.++.. .+. -..+|+.++..+.+.+.++.|...|+++|. +.
T Consensus 410 ~P~Dp--lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~ 485 (611)
T KOG1173|consen 410 APSDP--LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LS 485 (611)
T ss_pred CCCcc--hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cC
Confidence 99884 67777888888999999999999999833 222 234799999999999999999999999999 77
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1771 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1771 p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
|+.. .......-.....|+.+.|...|.+|+-
T Consensus 486 ~k~~-~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 486 PKDA-STHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCch-hHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 7776 5666666667778999999999999974
No 104
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.16 E-value=1.3e-10 Score=109.16 Aligned_cols=77 Identities=52% Similarity=0.993 Sum_probs=71.5
Q ss_pred CCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccccc
Q 000236 1342 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418 (1810)
Q Consensus 1342 ~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~~~ 1418 (1810)
++|+++.|+|+++.++|+||+|.+.+++|++|++++++.+..++.+.|++||.|+|+|+++|.+++++.|++|++++
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~~~ 77 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKASYF 77 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEeecC
Confidence 46999999999999999999998547999999999999988888899999999999999999999999999998764
No 105
>PRK08582 hypothetical protein; Provisional
Probab=99.16 E-value=1.5e-10 Score=119.92 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=75.3
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccccc
Q 000236 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1330 (1810)
Q Consensus 1251 l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~ 1330 (1810)
+++|+++.|+|++|+++|+||+|+++++|+||+++++|.|+.++.+.|++||.|+|+|+++|. +++|.||+|+....||
T Consensus 3 ~kvG~iv~G~V~~I~~fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~~~~~~ 81 (139)
T PRK08582 3 IEVGSKLQGKVTGITNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKAKDRPK 81 (139)
T ss_pred CcCCCEEEEEEEEEECCeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEecccCch
Confidence 689999999999999999999999999999999999999999999999999999999999997 5999999999887765
Q ss_pred c
Q 000236 1331 S 1331 (1810)
Q Consensus 1331 ~ 1331 (1810)
.
T Consensus 82 ~ 82 (139)
T PRK08582 82 R 82 (139)
T ss_pred h
Confidence 3
No 106
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.14 E-value=4.4e-09 Score=141.95 Aligned_cols=247 Identities=15% Similarity=0.138 Sum_probs=147.5
Q ss_pred CCCcHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000236 1543 APRTPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1621 (1810)
Q Consensus 1543 ~~~a~~~fer~l~~~-P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a 1621 (1810)
.++|...|+++.... .-+...+..++..+.+.+.+++|+.+++.+++.--.. + ..++.++++++.+.| ..+.|
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-d---~~~~~~Li~~y~k~G--~~~~A 379 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-D---IVANTALVDLYSKWG--RMEDA 379 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC-C---eeehHHHHHHHHHCC--CHHHH
Confidence 555555665554321 2234455555566666666666666666665432111 1 235666666666666 44666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCC
Q 000236 1622 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1699 (1810)
Q Consensus 1622 ~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~-~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p 1699 (1810)
+++|+++.+ +....|..++..|.+.|+.++|.++|++|.+. ...+...|..+...+... ..++|.++|+.+.+..+
T Consensus 380 ~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 380 RNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 777666543 33356667777777777777777777776653 234555666666666666 67777777776665432
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 000236 1700 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1779 (1810)
Q Consensus 1700 ~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~ 1779 (1810)
-......|..++.++.+.|++++|..+|+++- ...+..+|..++..+...|+++.|+.++++++. +.|.+. ..|.
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~-~~y~ 532 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKL-NNYV 532 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCC-cchH
Confidence 22223456666666777777777777666531 112345677777777777777777777777665 555544 3556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 000236 1780 KYLEYEKSVGEEERIEYVKQKAM 1802 (1810)
Q Consensus 1780 ~yl~~E~~~G~~~~a~~v~~rAl 1802 (1810)
..++...+.|.+++|.+++++..
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 66666667777777777776654
No 107
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.14 E-value=3.3e-09 Score=122.46 Aligned_cols=232 Identities=18% Similarity=0.294 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHhcC-----C--HHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000236 1562 FVWIKYMAFMLSMA-----D--VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634 (1810)
Q Consensus 1562 ~~W~~y~~~~~~~~-----~--~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~ 1634 (1810)
.-|+.++.+++..+ + ..+---+|++++.-+++.+ .+|..|-......+ +.++|.++.+|++.++|+
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~-----evw~dys~Y~~~is--d~q~al~tv~rg~~~sps 334 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAE-----EVWFDYSEYLIGIS--DKQKALKTVERGIEMSPS 334 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHhhcc--HHHHHHHHHHhcccCCCc
Confidence 34999999987553 2 2334456788888888755 59999999988888 789999999999999998
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHh----cC--------------------------CCHHHHHHHHHHHHHh-c
Q 000236 1635 KKVHLALLGLYERTEQNKLADELLYKMIKK----FK--------------------------HSCKVWLRRVQRLLKQ-Q 1683 (1810)
Q Consensus 1635 ~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~----~~--------------------------~~~~~w~~~a~~~~~~-~ 1683 (1810)
+...|+..|+..++.++.+..|+++... +. .-.-+|.-+.+...+. .
T Consensus 335 --L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~G 412 (660)
T COG5107 335 --LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRG 412 (660)
T ss_pred --hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 5666777777777777777766665431 11 1234577777777777 8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 000236 1684 QEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762 (1810)
Q Consensus 1684 ~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~-~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lfe 1762 (1810)
.+.||.+|-++-+.--..+ .+|+..|-+++ ..||+.-|-.+|+-.+..+|+.+..-..|..+++..+|-..||++|+
T Consensus 413 l~aaR~~F~k~rk~~~~~h--~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGH--HVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHHHHHhccCCCCc--ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 9999999999876531222 56777777666 46899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000236 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805 (1810)
Q Consensus 1763 ral~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v 1805 (1810)
.++. .+...+.+.+|.+|+++|...|+...|..+-+|..+.+
T Consensus 491 tsv~-r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 491 TSVE-RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HhHH-HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 8887 45556778899999999999999999888888876654
No 108
>PRK07252 hypothetical protein; Provisional
Probab=99.13 E-value=2.1e-10 Score=115.58 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=72.5
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 635 ~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
++|+++.|+|++|+++|+||++.+++.||+|.++++++++.++.+.|++||.|+|+|+++|++.+++.||++....
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~~~ 77 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTLEE 77 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999998754
No 109
>PRK08582 hypothetical protein; Provisional
Probab=99.12 E-value=2.3e-10 Score=118.57 Aligned_cols=76 Identities=30% Similarity=0.434 Sum_probs=71.8
Q ss_pred CCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 634 ~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
+++|+++.|+|++|+++|+||++.+++.||+|++++++.++.++.+.|++||.|+|+|+++|. +++|.||+++...
T Consensus 3 ~kvG~iv~G~V~~I~~fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~~~ 78 (139)
T PRK08582 3 IEVGSKLQGKVTGITNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKAKD 78 (139)
T ss_pred CcCCCEEEEEEEEEECCeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEeccc
Confidence 678999999999999999999999999999999999999999999999999999999999997 5999999998754
No 110
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.12 E-value=1.7e-10 Score=105.28 Aligned_cols=68 Identities=31% Similarity=0.564 Sum_probs=64.9
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000236 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1412 (1810)
Q Consensus 1344 G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~ls 1412 (1810)
|+++.|+|+++.++|+||+|.+ +++|++|++++++.+..++.+.|++||.++++|+++|++++||.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGR-GVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCC-CCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999986 7999999999999999999999999999999999999999999876
No 111
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.11 E-value=1.1e-10 Score=114.09 Aligned_cols=77 Identities=35% Similarity=0.513 Sum_probs=70.3
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCccc-------------------CCccccCCCCcEEEEEEEEE
Q 000236 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-------------------ESPEKEFPIGKLVAGRVLSV 1311 (1810)
Q Consensus 1251 l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~-------------------~~~~~~f~~G~~V~~~Vl~v 1311 (1810)
|++|++|.|.|+++.++|+||.|+.+++|++|+++++|.|. .++.+.|++||.|+|+|+++
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~~ 80 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSL 80 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEECCCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEEc
Confidence 57899999999999999999999999999999999999773 34778999999999999999
Q ss_pred eCC---CCEEEEEEecCcc
Q 000236 1312 EPL---SKRVEVTLKTSDS 1327 (1810)
Q Consensus 1312 d~~---~~ri~lSlk~~~~ 1327 (1810)
|++ +++|.||+|++..
T Consensus 81 d~~~~~~~~i~LSlr~~~v 99 (100)
T cd05693 81 DKSKSGKKRIELSLEPELV 99 (100)
T ss_pred cCCcCCCcEEEEEecHHHC
Confidence 987 7999999998653
No 112
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.10 E-value=2.1e-08 Score=122.20 Aligned_cols=246 Identities=20% Similarity=0.242 Sum_probs=188.7
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS-MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~-~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e 1619 (1810)
.....+.+.|||.+..-|.+..+|+.|.+++.. .++.+..|..|+||...+.. ++-...+|-.|+.+++...+ -.
T Consensus 93 g~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~--dF~S~~lWdkyie~en~qks--~k 168 (577)
T KOG1258|consen 93 GNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL--DFLSDPLWDKYIEFENGQKS--WK 168 (577)
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc--chhccHHHHHHHHHHhcccc--HH
Confidence 346778899999999999999999999999964 56888899999999987765 44445799999999988884 48
Q ss_pred HHHHHHHHHHhcCCCH-----HHHHHHHH---------------------------------------------------
Q 000236 1620 AVVKVFQRALQYCDPK-----KVHLALLG--------------------------------------------------- 1643 (1810)
Q Consensus 1620 ~a~~vferAl~~~~~~-----~i~~~l~~--------------------------------------------------- 1643 (1810)
....+|+|.++.--.. .-|..+++
T Consensus 169 ~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~ 248 (577)
T KOG1258|consen 169 RVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLT 248 (577)
T ss_pred HHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhh
Confidence 8889999988653211 11222221
Q ss_pred ---------------HHHHhCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCC
Q 000236 1644 ---------------LYERTEQNKLADELLYKMIKKF--------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1699 (1810)
Q Consensus 1644 ---------------~~~~~g~~~~A~~~~e~~lk~~--------~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p 1699 (1810)
+|..+....+.+..|+..++.. +...+.|..|+.|.... +++.+.-+|+||+-.+.
T Consensus 249 ~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA 328 (577)
T KOG1258|consen 249 EEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA 328 (577)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh
Confidence 1111111222222333333221 13467899999999999 99999999999997765
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 000236 1700 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSE-YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1778 (1810)
Q Consensus 1700 ~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~-~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw 1778 (1810)
.. ..+|.+|+.+....|+.+-|..++.++.+. .|+.+-+...|+.++...|+++.|+.+++++.+ .+ |.-. .+=
T Consensus 329 ~Y--~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~-e~-pg~v-~~~ 403 (577)
T KOG1258|consen 329 LY--DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIES-EY-PGLV-EVV 403 (577)
T ss_pred hh--HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh-hC-Cchh-hhH
Confidence 44 589999999999999999999999999886 477788999999999999999999999999998 45 5555 577
Q ss_pred HHHHHHHHHcCCHHHHH
Q 000236 1779 KKYLEYEKSVGEEERIE 1795 (1810)
Q Consensus 1779 ~~yl~~E~~~G~~~~a~ 1795 (1810)
.+++.+|.+.|+.+.+.
T Consensus 404 l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 404 LRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHhHHHHhcchhhhh
Confidence 88899999999888877
No 113
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=99.10 E-value=3.5e-10 Score=105.92 Aligned_cols=73 Identities=25% Similarity=0.331 Sum_probs=68.8
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC--CeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeecc
Q 000236 635 HPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 707 (1810)
Q Consensus 635 ~~G~~~~G~V~~i~~~G~fV~f~~--gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~ 707 (1810)
+.|+++.|+|.++.++|+||++.+ ++.||+|.+++++.+..++.+.|++||+|+|+|+++|.+.+++.||+|+
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 479999999999999999999974 6999999999999999999999999999999999999999999999874
No 114
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.09 E-value=1.1e-08 Score=138.03 Aligned_cols=223 Identities=13% Similarity=0.089 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--CCCHHHH
Q 000236 1561 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY--CDPKKVH 1638 (1810)
Q Consensus 1561 ~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~--~~~~~i~ 1638 (1810)
...|..++..|.+.|++++|+++|++... ++ ...|..++..+.+.| ..++|.++|+++.+. .|....|
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~----~vt~n~li~~y~~~g--~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPE----KT----TVAWNSMLAGYALHG--YSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CC----hhHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHH
Confidence 33444455555555555555555554321 01 234555555555555 235555555555432 2333455
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000236 1639 LALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1716 (1810)
Q Consensus 1639 ~~l~~~~~~~g~~~~A~~~~e~~lk~~-~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~ 1716 (1810)
..++..|.+.|++++|.++++.+++.. +.+..++..++..|.+. ++++|+++|+++.+. ....|..++..+.+
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-----d~~t~n~lI~~y~~ 403 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-----NLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-----CeeeHHHHHHHHHH
Confidence 555555555555555555555555432 34445555555555555 555555555554321 12345555555555
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000236 1717 NGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERI 1794 (1810)
Q Consensus 1717 ~g~~e~Ar~lfe~al~~~-P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~-~~~p~~~~~lw~~yl~~E~~~G~~~~a 1794 (1810)
.|+.++|..+|+++.... .-+...+..++..+.+.|..++|+.+|+.+... ...|+. ..|...++...+.|..++|
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~--~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA--MHYACMIELLGREGLLDEA 481 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc--cchHhHHHHHHhcCCHHHH
Confidence 555555555555554431 112334455555555555555555555555431 233322 2455555555555555555
Q ss_pred HHHHHH
Q 000236 1795 EYVKQK 1800 (1810)
Q Consensus 1795 ~~v~~r 1800 (1810)
.+++++
T Consensus 482 ~~~~~~ 487 (697)
T PLN03081 482 YAMIRR 487 (697)
T ss_pred HHHHHH
Confidence 555543
No 115
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.08 E-value=3.8e-10 Score=106.03 Aligned_cols=74 Identities=32% Similarity=0.558 Sum_probs=69.8
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000236 635 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708 (1810)
Q Consensus 635 ~~G~~~~G~V~~i~~~G~fV~f~~-gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~ 708 (1810)
++|+++.|+|++++++|+||++.+ ++.||+|.+++++++..++.+.|++||.|+|+|+++|++++++.||+|++
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~ 75 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKAS 75 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEee
Confidence 369999999999999999999985 89999999999998888899999999999999999999999999999875
No 116
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.08 E-value=2.4e-10 Score=104.76 Aligned_cols=68 Identities=29% Similarity=0.423 Sum_probs=63.6
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCc-ccccCcccCcCCCCEEEEEEEEeeCCCCeEEEe
Q 000236 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-GQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~-~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lS 704 (1810)
|+.+.|+|++++++|+||++.+++.||+|.++++| ....++.+.|++||+|+|+|+++|.+++|+.||
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDGGIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCCCCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 68899999999999999999999999999999996 567788889999999999999999999999875
No 117
>PRK07252 hypothetical protein; Provisional
Probab=99.08 E-value=4.6e-10 Score=113.07 Aligned_cols=76 Identities=32% Similarity=0.620 Sum_probs=71.2
Q ss_pred CCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccccc
Q 000236 1342 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418 (1810)
Q Consensus 1342 ~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~~~ 1418 (1810)
++|+++.|+|++|.++|+||+|.+ +++|++|+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+|....
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~-~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~~~ 77 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALEN-GTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTLEE 77 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECC-CCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 579999999999999999999986 7999999999999999888899999999999999999999999999998533
No 118
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=99.08 E-value=4.6e-10 Score=103.81 Aligned_cols=70 Identities=26% Similarity=0.406 Sum_probs=64.6
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEee
Q 000236 635 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705 (1810)
Q Consensus 635 ~~G~~~~G~V~~i~~~G~fV~f~~-gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSl 705 (1810)
..|+++.|.|+++++||+||++.+ +..||+|++++++.++.++.+.|++||+|+|+|+++|.++ |+.||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 479999999999999999999954 3799999999999999999999999999999999999876 999986
No 119
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=99.08 E-value=5.6e-10 Score=104.55 Aligned_cols=74 Identities=31% Similarity=0.556 Sum_probs=69.1
Q ss_pred CCCcEEEEEEEEEeeceEEEEEeCC-ceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecc
Q 000236 1342 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415 (1810)
Q Consensus 1342 ~~G~~v~G~V~~i~~~G~fV~l~~~-~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~ 1415 (1810)
++|+++.|+|+++.++|+||+|.+. +++|++|+|++++.+..++.+.|++||.|+++|+++|.+++++.||+|.
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 5799999999999999999999742 5999999999999999999999999999999999999999999999874
No 120
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.07 E-value=1.6e-08 Score=126.62 Aligned_cols=227 Identities=12% Similarity=0.119 Sum_probs=179.8
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccc-hhhHH--HHHHHHHH
Q 000236 1532 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE-ENEKL--NIWVAYFN 1608 (1810)
Q Consensus 1532 ~~~e~~~~~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~-e~e~~--~lW~~yl~ 1608 (1810)
+..+..+..++.+.|...+++++..+|+++.+...++..+.+.|++++|.+++.+..+...... +..++ ..|..++.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4445556577799999999999999999999999999999999999999999999997655422 11111 23444333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHH
Q 000236 1609 LENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1686 (1810)
Q Consensus 1609 le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~ 1686 (1810)
...... +.+...++++..-+..+. ..++..++..+...|+.++|...++++++ .+.++.+...|+.+ .. ++++
T Consensus 238 ~~~~~~--~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~ 312 (398)
T PRK10747 238 QAMADQ--GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQ 312 (398)
T ss_pred HHHHhc--CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHH
Confidence 322222 234444444443332332 38999999999999999999999999998 45577777777764 34 8999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1687 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1687 A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
+.+.+++.++..|.+ +.+++.+|+++++.+++++|+..|++++...|++.. +..++.++.+.|+.+.|..+|++++.
T Consensus 313 al~~~e~~lk~~P~~--~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 313 LEKVLRQQIKQHGDT--PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999988 489999999999999999999999999999998654 56789999999999999999999987
No 121
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.06 E-value=4.3e-10 Score=103.16 Aligned_cols=68 Identities=37% Similarity=0.770 Sum_probs=63.0
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCc-ccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000236 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE-DHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1412 (1810)
Q Consensus 1344 G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~-~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~ls 1412 (1810)
|+++.|+|+++.+||+||+|.+ +++||+|++++++ .+..++.+.|++||.|+++|+++|.+++||.||
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~-~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDG-GIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCC-CCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 7899999999999999999986 8999999999996 566778889999999999999999999999875
No 122
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.05 E-value=5.3e-10 Score=100.88 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=60.7
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEe
Q 000236 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lS 704 (1810)
|+++.|+|++++++|+||++.+++.||+|.++++..... .+.|++||.++|+|+++|++++++.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLSSFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcCCceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 788999999999999999999999999999999865443 778999999999999999999999886
No 123
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.05 E-value=3.4e-08 Score=114.29 Aligned_cols=254 Identities=17% Similarity=0.170 Sum_probs=184.9
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCC----CH
Q 000236 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP----PE 1618 (1810)
Q Consensus 1543 ~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~----~~ 1618 (1810)
.++-++.|+++....|--+.+|..|+.-++...++.....+|-|||...-. +.+|+.|+..-.+..+. ..
T Consensus 58 ~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~------ldLW~lYl~YIRr~n~~~tGq~r 131 (660)
T COG5107 58 MDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN------LDLWMLYLEYIRRVNNLITGQKR 131 (660)
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc------HhHHHHHHHHHHhhCcccccchh
Confidence 556666777777777777777777777777777777777777777754331 56888888876665421 11
Q ss_pred HHHHHHHHHHHhcC---CC-HHHHHHHHHHHH---------HhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-c
Q 000236 1619 EAVVKVFQRALQYC---DP-KKVHLALLGLYE---------RTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-Q 1683 (1810)
Q Consensus 1619 e~a~~vferAl~~~---~~-~~i~~~l~~~~~---------~~g~~~~A~~~~e~~lk~~-~~~~~~w~~~a~~~~~~-~ 1683 (1810)
-..-++|+=.++.. |. .++|..++.+++ ++.+.+..+..|.+|+... .+-.++|..|-+|+.+. +
T Consensus 132 ~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~ 211 (660)
T COG5107 132 FKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNK 211 (660)
T ss_pred hhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHH
Confidence 22334444444422 22 388888888763 4566778899999998753 56689999999999875 3
Q ss_pred -------------HHHHHHHHHHHHHhCCC----------------CChHHHHHHHHHHHHHcCC-------HHHHHHHH
Q 000236 1684 -------------QEGVQAVVQRALLSLPR----------------HKHIKFISQTAILEFKNGV-------ADRGRSMF 1727 (1810)
Q Consensus 1684 -------------~~~A~~ll~ralk~~p~----------------~~~~~~~~~~a~l~~~~g~-------~e~Ar~lf 1727 (1810)
+..|++.|+.....-.+ ...-.-|++|+.+++..|- ..+..-+|
T Consensus 212 ~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~ 291 (660)
T COG5107 212 ITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIH 291 (660)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHH
Confidence 56688888775432111 0011459999999986541 45777889
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000236 1728 EGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807 (1810)
Q Consensus 1728 e~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~~ 1807 (1810)
++++...|-..++|..|.......+|-++|....+|++. ..| .+..+|...+.-..+.+++..+|+++.+-+.+
T Consensus 292 ~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sp----sL~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 292 NQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSP----SLTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCC----chheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 555 36666777788888999999999999887765
Q ss_pred h
Q 000236 1808 T 1808 (1810)
Q Consensus 1808 ~ 1808 (1810)
.
T Consensus 366 ~ 366 (660)
T COG5107 366 K 366 (660)
T ss_pred H
Confidence 3
No 124
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=8.1e-09 Score=115.03 Aligned_cols=226 Identities=13% Similarity=0.086 Sum_probs=171.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 000236 1565 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLG 1643 (1810)
Q Consensus 1565 ~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~ 1643 (1810)
..++.+++++|-+.+|..-++.+|+..|.-+ -++-+...+.+.. +++.|..+|...+...|.+ .+..-.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~d------TfllLskvY~rid--QP~~AL~~~~~gld~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPD------TFLLLSKVYQRID--QPERALLVIGEGLDSFPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchh------HHHHHHHHHHHhc--cHHHHHHHHhhhhhcCCchhhhhhhhHH
Confidence 3577788888888888888888887776433 4555666677777 5588888888888888887 67778888
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000236 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722 (1810)
Q Consensus 1644 ~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~ 1722 (1810)
+++..+++++|.++|.++++..+.+.+.....+.-|+-. +++-|...|+|.|+.--.+ ++++.+.+...+--+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhh
Confidence 888888888888888888888887777766666666666 7888888888888764333 5778888877777778888
Q ss_pred HHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000236 1723 GRSMFEGILSEY--P-KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1799 (1810)
Q Consensus 1723 Ar~lfe~al~~~--P-~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~ 1799 (1810)
+...|+|++... | ...|+|..+.......||+.-|...|.-|+. ..+.+. .-++...-++.+.|+.+.|+.++.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~-ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHG-EALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchH-HHHHhHHHHHhhcCchHHHHHHHH
Confidence 888888887653 3 2467888888888888888888888888887 555555 466666777888888888888877
Q ss_pred HHHH
Q 000236 1800 KAME 1803 (1810)
Q Consensus 1800 rAl~ 1803 (1810)
.|-.
T Consensus 454 ~A~s 457 (478)
T KOG1129|consen 454 AAKS 457 (478)
T ss_pred Hhhh
Confidence 7654
No 125
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.04 E-value=7.3e-10 Score=102.91 Aligned_cols=72 Identities=25% Similarity=0.433 Sum_probs=68.7
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000236 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~ 708 (1810)
|+++.|+|++++++|+||++.+++.||+|.+++++++..++.+.|++||.++|+|+++|++++++.||++..
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~~ 72 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGDGVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKAK 72 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCCCCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEEc
Confidence 788999999999999999999999999999999999889999999999999999999999999999999853
No 126
>PRK05807 hypothetical protein; Provisional
Probab=99.03 E-value=7.8e-10 Score=114.37 Aligned_cols=74 Identities=31% Similarity=0.643 Sum_probs=69.6
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000236 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416 (1810)
Q Consensus 1340 ~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~ 1416 (1810)
.+++|++|.|+|+.|+++|+||.| + +..||+|+|++++.++.++.+.|++||.|+|+|+++|. +++|.||+|..
T Consensus 2 ~~~vG~vv~G~Vt~i~~~GafV~L-~-~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~ 75 (136)
T PRK05807 2 TLKAGSILEGTVVNITNFGAFVEV-E-GKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQA 75 (136)
T ss_pred CccCCCEEEEEEEEEECCeEEEEE-C-CEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 467999999999999999999999 4 68999999999999999999999999999999999997 79999999984
No 127
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.03 E-value=7.1e-10 Score=102.55 Aligned_cols=71 Identities=27% Similarity=0.407 Sum_probs=64.5
Q ss_pred CCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcc-cccCcccCcCCCCEEEEEEEEeeCCCCeEEEe
Q 000236 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-QRADLSKTYYVGQSVRSNILDVNSETGRITLS 704 (1810)
Q Consensus 634 ~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~-~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lS 704 (1810)
+++|+.+.|+|++++++|+||++.+++.||+|.++++|. ...++...|++||+|+|+|+++|.+++++.|+
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCCCCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 468999999999999999999999999999999999864 44577788999999999999999999999874
No 128
>PLN03077 Protein ECB2; Provisional
Probab=99.02 E-value=2.7e-08 Score=137.60 Aligned_cols=190 Identities=12% Similarity=0.061 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000236 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1681 (1810)
Q Consensus 1602 lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~ 1681 (1810)
+|.++++++.+.| ..++|+++|++..+ +....|..++..|.+.|+.++|..+|++|....+.+...|..+...+.+
T Consensus 426 ~~n~Li~~y~k~g--~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 426 VANALIEMYSKCK--CIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence 3444444444444 23444444444321 1123344444444444444444444444443333333333333333322
Q ss_pred h-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 000236 1682 Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1760 (1810)
Q Consensus 1682 ~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~l 1760 (1810)
. ..+.+++++..+++.--.. ...++..+..++.+.|++++|+.+|+.. +.+...|+.++..+.+.|+.++|..+
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 2 3333333333332221110 0122233344555556666666665554 34455566666666666666666666
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000236 1761 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802 (1810)
Q Consensus 1761 feral~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl 1802 (1810)
|+++......|+.. .|...+....+.|..+++..+|++..
T Consensus 577 f~~M~~~g~~Pd~~--T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 577 FNRMVESGVNPDEV--TFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHcCCCCCcc--cHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 66665544444433 44444444455555666655555554
No 129
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=1.3e-08 Score=113.37 Aligned_cols=195 Identities=16% Similarity=0.124 Sum_probs=178.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-c
Q 000236 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1683 (1810)
Q Consensus 1605 ~yl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~ 1683 (1810)
++..++.++|- ...|.+.|+.+++..+.-..|..+..+|.+-.+.+.|..+|...+..||.+.....-.+.++..+ +
T Consensus 228 Q~gkCylrLgm--~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGM--PRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcC--hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 67889999995 49999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000236 1684 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1763 (1810)
Q Consensus 1684 ~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lfer 1763 (1810)
+++|.++|+++++..|.+ ++.+.-.|.-++--+++|-|...|+|+|+.--.+++++...+.+.+-.+++|-+..-|+|
T Consensus 306 ~~~a~~lYk~vlk~~~~n--vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPIN--VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcCCcc--ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 999999999999999887 567777777777788999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1764 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1764 al~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
|++.--.|....++|-......-..||+.-|.++|+-|+.
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 9995554677779998888888889999999999998864
No 130
>PLN02789 farnesyltranstransferase
Probab=99.01 E-value=7.8e-08 Score=115.11 Aligned_cols=230 Identities=14% Similarity=0.101 Sum_probs=188.0
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~-~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e 1619 (1810)
+..++|...++++|..+|++..+|.....++..++ .+++|.+.+++++...|.. ..+|.....+...++....+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-----yqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-----YQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-----hHHhHHHHHHHHHcCchhhH
Confidence 34889999999999999999999999999988888 6899999999999776642 35798777666677731136
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--------cHHHHHHH
Q 000236 1620 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--------QQEGVQAV 1690 (1810)
Q Consensus 1620 ~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~--------~~~~A~~l 1690 (1810)
++...+++|++..|.+ .+|...+.++...+++++|.+.++++++..+.+..+|...+..+... ..+++.+.
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 7899999999999986 99999999999999999999999999999999999999998766442 23567888
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------
Q 000236 1691 VQRALLSLPRHKHIKFISQTAILEFKN----GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-------------- 1752 (1810)
Q Consensus 1691 l~ralk~~p~~~~~~~~~~~a~l~~~~----g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~g-------------- 1752 (1810)
..+++...|.+. .+|..+..++... +...+|...+.+++...|++..+...+++++....
T Consensus 206 ~~~aI~~~P~N~--SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILANPRNE--SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhCCCCc--CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 889999999985 7898888888773 45577999999999999999999888899886422
Q ss_pred ----ChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000236 1753 ----DVDLIRGLFERAISLSLPPKKMKFLFKK 1780 (1810)
Q Consensus 1753 ----d~e~ar~lferal~~~~~p~~~~~lw~~ 1780 (1810)
..+.|..+++.+ . ...|-+. ..|.-
T Consensus 284 ~~~~~~~~a~~~~~~l-~-~~d~ir~-~yw~~ 312 (320)
T PLN02789 284 EELSDSTLAQAVCSEL-E-VADPMRR-NYWAW 312 (320)
T ss_pred cccccHHHHHHHHHHH-H-hhCcHHH-HHHHH
Confidence 336688888887 3 4666555 36653
No 131
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.00 E-value=1.1e-09 Score=98.71 Aligned_cols=66 Identities=27% Similarity=0.516 Sum_probs=60.6
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000236 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1412 (1810)
Q Consensus 1344 G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~ls 1412 (1810)
|+++.|+|+++.++|+||+|.+ +++|++|.+++++.+.. .+.|++||.++|+|+.+|++++||.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~-~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLS-SFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcC-CceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999986 79999999999876544 778999999999999999999999886
No 132
>PLN03077 Protein ECB2; Provisional
Probab=99.00 E-value=5.4e-08 Score=134.68 Aligned_cols=246 Identities=12% Similarity=0.054 Sum_probs=144.4
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000236 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1622 (1810)
Q Consensus 1543 ~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~ 1622 (1810)
..+|...|++++...+.+...+..++..+...|.++.+++++..+++.--..+ ..+..++++++.+.| +.+.|.
T Consensus 471 ~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~----~~~~naLi~~y~k~G--~~~~A~ 544 (857)
T PLN03077 471 CFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD----GFLPNALLDLYVRCG--RMNYAW 544 (857)
T ss_pred HHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc----ceechHHHHHHHHcC--CHHHHH
Confidence 33444444444433233334444444444444444444444444443211100 123445666666667 457777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCC
Q 000236 1623 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1700 (1810)
Q Consensus 1623 ~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~-~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1700 (1810)
++|++. .+....|..++..|.+.|+.++|.++|++|.... ..+...|..+...+.+. ..++|.++|+++.+..+-
T Consensus 545 ~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 545 NQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 777665 3444667777777777777777777777776532 33445555555666666 777777777777654433
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000236 1701 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1780 (1810)
Q Consensus 1701 ~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~ 1780 (1810)
......|..+..++.+.|++++|..+++.. ...| +..+|..++..+...|+.+.|+...++++. +.|.+. ..|..
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~-~~y~l 696 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSV-GYYIL 696 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCc-chHHH
Confidence 333456677777777777777777777664 2223 356677777777677777777777777776 555555 45555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 000236 1781 YLEYEKSVGEEERIEYVKQKAM 1802 (1810)
Q Consensus 1781 yl~~E~~~G~~~~a~~v~~rAl 1802 (1810)
+..+....|++++|.++.+...
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHH
Confidence 5666666777777776666554
No 133
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.00 E-value=1.3e-09 Score=100.78 Aligned_cols=71 Identities=34% Similarity=0.627 Sum_probs=63.9
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcc-cccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1412 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~-~~~~~~~~~~~G~~V~~~I~~id~~~~ri~ls 1412 (1810)
+++|+++.|+|+++.++|+||+|.+ +++||+|++++.+. +..+..+.|++||.|+++|+++|.++++|.|+
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~-~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEE-GVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCC-CCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 5789999999999999999999987 79999999999864 44467788999999999999999999999874
No 134
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.00 E-value=2.6e-08 Score=125.78 Aligned_cols=269 Identities=11% Similarity=0.038 Sum_probs=180.8
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHH-----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---ccchhhHHH
Q 000236 1530 EIRAAEERLLEKDAPRTPDEFERLVR-----SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN---IREENEKLN 1601 (1810)
Q Consensus 1530 ~~~~~e~~~~~~~~~~a~~~fer~l~-----~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~---~~~e~e~~~ 1601 (1810)
.|-.....+..++.-.+...|.+++. ..+--+......+.+++..|++.+|+..|.+|+.... ..++....+
T Consensus 416 a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 416 AWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 34444444445665556778887772 2344456667888999999999999999999997622 112111123
Q ss_pred H--HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000236 1602 I--WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1678 (1810)
Q Consensus 1602 l--W~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~ 1678 (1810)
+ -..++.+....++ .+.|.+.|...++.+|.. ..|+.++-+....+...+|...+..++.....++.+|..++.+
T Consensus 496 lt~~YNlarl~E~l~~--~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHD--TEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred hHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 3 4455666677774 489999999999999987 8999999888888999999999999999999999999999999
Q ss_pred HHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000236 1679 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK------------NGVADRGRSMFEGILSEYPKRTDLWSIYL 1745 (1810)
Q Consensus 1679 ~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~------------~g~~e~Ar~lfe~al~~~P~~~~lw~~ya 1745 (1810)
++.. .+..|.+-|+++++........-..+.+|.++++ .+.+++|.++|.++|+.+|+|..+-+-.+
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIg 653 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIG 653 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchh
Confidence 9888 7777777777766654444333344455554432 12356777777777777777665555555
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1746 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1746 ~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
-.+...|++..|+.+|.++.. ...+.. +.|....+....+|.+..|.++|+.++.
T Consensus 654 iVLA~kg~~~~A~dIFsqVrE--a~~~~~-dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVRE--ATSDFE-DVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHH--HHhhCC-ceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666665554 221112 4555555555555566666666665543
No 135
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.99 E-value=1.9e-09 Score=100.06 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=69.0
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000236 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325 (1810)
Q Consensus 1254 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~ 1325 (1810)
|+++.|+|+++.++|+||++.++++|++|++++++.+..++.+.|++||.++|+|+++|++++++.||+|..
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~~ 72 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGDGVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKAK 72 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCCCCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEEc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999864
No 136
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.98 E-value=1.7e-09 Score=99.44 Aligned_cols=70 Identities=24% Similarity=0.336 Sum_probs=67.1
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeec
Q 000236 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk 706 (1810)
|+++.|+|.++.++|+||++.++..|++|.+++++.+..+|.+.|++||.++|+|+++|++++++.||++
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGYKSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7899999999999999999998999999999999999999999999999999999999998999999975
No 137
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.98 E-value=1e-07 Score=120.06 Aligned_cols=232 Identities=15% Similarity=0.109 Sum_probs=187.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 000236 1565 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLG 1643 (1810)
Q Consensus 1565 ~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~ 1643 (1810)
+..|......|++++|..++..+++..|... ..|..+...+.+.| +.+++...+--|...+|.. ..|..++.
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~-----~ay~tL~~IyEqrG--d~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNP-----IAYYTLGEIYEQRG--DIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccch-----hhHHHHHHHHHHcc--cHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 3445556666999999999999998877533 57999999999999 7899999999999999876 99999999
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC---hHHHHHHHHHHHHHcCC
Q 000236 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK---HIKFISQTAILEFKNGV 1719 (1810)
Q Consensus 1644 ~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~---~~~~~~~~a~l~~~~g~ 1719 (1810)
+..+.|.+.+|+-.|.++++..|.+.+..+.++.+|.++ +..+|...|.+++...|... -......+++.+...++
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999 99999999999999999321 01344455566666665
Q ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Q 000236 1720 ADRGRSMFEGILS------------------------------------------------------------------- 1732 (1810)
Q Consensus 1720 ~e~Ar~lfe~al~------------------------------------------------------------------- 1732 (1810)
-++|.+.++.++.
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 5666666655521
Q ss_pred ------------------------------hC--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 000236 1733 ------------------------------EY--P-KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1779 (1810)
Q Consensus 1733 ------------------------------~~--P-~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~ 1779 (1810)
.+ | ...+++...++++...|.+..|..+|..++. .++.+..++|.
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~--~~~~~~~~vw~ 453 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN--REGYQNAFVWY 453 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc--CccccchhhhH
Confidence 00 1 1234666677777788999999999999998 44444448999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000236 1780 KYLEYEKSVGEEERIEYVKQKAMEYV 1805 (1810)
Q Consensus 1780 ~yl~~E~~~G~~~~a~~v~~rAl~~v 1805 (1810)
+....++..|..+.|...|++++...
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~ 479 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILA 479 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999998753
No 138
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=7.9e-09 Score=124.45 Aligned_cols=243 Identities=14% Similarity=0.081 Sum_probs=171.8
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e 1619 (1810)
.++.++|.-.||.++..+|.+..+|..++..+..+++-..|..+++||++..|.. +.+.++++-.|...+ -..
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N-----leaLmaLAVSytNeg--~q~ 370 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN-----LEALMALAVSYTNEG--LQN 370 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHhhhh--hHH
Confidence 5669999999999999999999999999999999999999999999999877643 234555555555555 346
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH---------HHhCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHh-cHHHH
Q 000236 1620 AVVKVFQRALQYCDPKKVHLALLGLY---------ERTEQNKLADELLYKMIKKFK--HSCKVWLRRVQRLLKQ-QQEGV 1687 (1810)
Q Consensus 1620 ~a~~vferAl~~~~~~~i~~~l~~~~---------~~~g~~~~A~~~~e~~lk~~~--~~~~~w~~~a~~~~~~-~~~~A 1687 (1810)
.|...++.-+...|.. .|+.-+..- .....+....++|-.+....+ .++++...++-+|.-. .+++|
T Consensus 371 ~Al~~L~~Wi~~~p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHhCccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 6777777777665432 111111100 111123345556666666665 6788888888777777 88888
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 000236 1688 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1767 (1810)
Q Consensus 1688 ~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~ 1767 (1810)
..+|+.||...|.+. .+|.+++-.+..-.+.++|...|.||++..|.-..+|..++--++..|.+.+|...|-.||..
T Consensus 450 iDcf~~AL~v~Pnd~--~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDY--LLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCchH--HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 888888888888774 788888887777777888888888888888888888888888888888888888888888872
Q ss_pred CCC---chh----HHHHHHHHHHHHHHcCCHH
Q 000236 1768 SLP---PKK----MKFLFKKYLEYEKSVGEEE 1792 (1810)
Q Consensus 1768 ~~~---p~~----~~~lw~~yl~~E~~~G~~~ 1792 (1810)
... ++. ...+|...=.+....+..+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 111 011 1246766555555555554
No 139
>PRK05807 hypothetical protein; Provisional
Probab=98.97 E-value=2.1e-09 Score=111.13 Aligned_cols=74 Identities=27% Similarity=0.466 Sum_probs=70.2
Q ss_pred CCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000236 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709 (1810)
Q Consensus 634 ~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~ 709 (1810)
+++|+++.|+|+.|+++|+||++ ++..||+|++++++.++.++.+.|++||.|+|+|+++|. ++++.||+|...
T Consensus 3 ~~vG~vv~G~Vt~i~~~GafV~L-~~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~~ 76 (136)
T PRK05807 3 LKAGSILEGTVVNITNFGAFVEV-EGKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQAM 76 (136)
T ss_pred ccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEecc
Confidence 56899999999999999999999 789999999999999999999999999999999999997 799999999865
No 140
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.97 E-value=2.5e-09 Score=98.32 Aligned_cols=70 Identities=27% Similarity=0.334 Sum_probs=67.4
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000236 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323 (1810)
Q Consensus 1254 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk 1323 (1810)
|+++.|+|.++.++|+||+++.+.+|++|.+++++.+..+|.+.|++||.++++|++++++++++.||+|
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGYKSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7899999999999999999998999999999999999999999999999999999999988999999985
No 141
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=2.2e-08 Score=120.69 Aligned_cols=230 Identities=18% Similarity=0.135 Sum_probs=185.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHH
Q 000236 1566 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGL 1644 (1810)
Q Consensus 1566 ~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~ 1644 (1810)
.-+.-+++.|++.+|.-+||.|++..|. +++.|..+.-.+.... ....|...++||++..|.+ .+..+|+--
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~-----haeAW~~LG~~qaENE--~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQ-----HAEAWQKLGITQAENE--NEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChH-----HHHHHHHhhhHhhhcc--chHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 4466678999999999999999987663 4678998888877777 5689999999999999986 899999999
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHH----HH-----HHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000236 1645 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ----RL-----LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1714 (1810)
Q Consensus 1645 ~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~----~~-----~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~ 1714 (1810)
|...|.-.+|..++...+...+ +..|...+. +. ... ......++|-.|...+|....+++...++-++
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p--~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKP--KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCc--cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 9999999999999999887532 222222221 00 111 35667788888888888755679999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000236 1715 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1794 (1810)
Q Consensus 1715 ~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a 1794 (1810)
+-.|++++|..+|+.||+..|.+..+|+.|+-.+..-...++|...|.||+. +.|.-.. .|-...--.+..|.+++|
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR-~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVR-VRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeee-eehhhhhhhhhhhhHHHH
Confidence 9999999999999999999999999999999999888899999999999999 7775442 333333335667999999
Q ss_pred HHHHHHHHHHHHh
Q 000236 1795 EYVKQKAMEYVES 1807 (1810)
Q Consensus 1795 ~~v~~rAl~~v~~ 1807 (1810)
...|-.|+..-+.
T Consensus 518 ~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 518 VKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999887654
No 142
>PRK08059 general stress protein 13; Validated
Probab=98.95 E-value=3.9e-09 Score=107.93 Aligned_cols=81 Identities=20% Similarity=0.419 Sum_probs=76.2
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000236 1249 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328 (1810)
Q Consensus 1249 ~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~ 1328 (1810)
.++++|+++.|.|+++.++|+||+++++++|++|++++++.+..++.+.|++||.|.|+|+++|.+++++.+|+|....+
T Consensus 3 ~~~k~G~iv~G~V~~i~~~G~fV~i~~~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~~~~ 82 (123)
T PRK08059 3 SQYEVGSVVTGKVTGIQPYGAFVALDEETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRATEEA 82 (123)
T ss_pred ccCCCCCEEEEEEEEEecceEEEEECCCCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEcccC
Confidence 45889999999999999999999999999999999999999998888899999999999999999999999999998765
Q ss_pred c
Q 000236 1329 T 1329 (1810)
Q Consensus 1329 ~ 1329 (1810)
|
T Consensus 83 ~ 83 (123)
T PRK08059 83 P 83 (123)
T ss_pred c
Confidence 4
No 143
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.95 E-value=2.1e-07 Score=123.82 Aligned_cols=252 Identities=10% Similarity=0.006 Sum_probs=151.0
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e 1619 (1810)
.++..+|.+.|++++..+|+++.++..++..+.+.++.++|.+.++++....|... ..+.++.++...+. ..
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~------~~l~layL~~~~~~--~~ 186 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ------NYMTLSYLNRATDR--NY 186 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH------HHHHHHHHHHhcch--HH
Confidence 36678999999999999999999999998999999999999999999997766311 22334444433442 34
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHH-------------------------------------------------------
Q 000236 1620 AVVKVFQRALQYCDPK-KVHLALLG------------------------------------------------------- 1643 (1810)
Q Consensus 1620 ~a~~vferAl~~~~~~-~i~~~l~~------------------------------------------------------- 1643 (1810)
+|.+.|+++++..|.+ .++..+..
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 5888888888877643 22222222
Q ss_pred ---------------------------------------------------------------------HHHHhCChHHH
Q 000236 1644 ---------------------------------------------------------------------LYERTEQNKLA 1654 (1810)
Q Consensus 1644 ---------------------------------------------------------------------~~~~~g~~~~A 1654 (1810)
.|...++.++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 22333344444
Q ss_pred HHHHHHHHHhcC----C--CHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCC-------------CChHHHHHHHHHHH
Q 000236 1655 DELLYKMIKKFK----H--SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-------------HKHIKFISQTAILE 1714 (1810)
Q Consensus 1655 ~~~~e~~lk~~~----~--~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~-------------~~~~~~~~~~a~l~ 1714 (1810)
..+|++++...+ . .......+.-.++++ ++++|..++++..+..|. ..........|+.+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 444444443221 0 111112222233334 555566665555553331 11234444456666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000236 1715 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1794 (1810)
Q Consensus 1715 ~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a 1794 (1810)
.-.|++.+|..+++.++...|.+..+++.+++++...|.+.+|+.+++++.. +.|++. .+-...+..-...|++.++
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~-~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSL-ILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccH-HHHHHHHHHHHhhhhHHHH
Confidence 6667777777777777777777777777777777777777777777766666 455544 2333333333445666666
Q ss_pred HHHHHHHH
Q 000236 1795 EYVKQKAM 1802 (1810)
Q Consensus 1795 ~~v~~rAl 1802 (1810)
+.+....+
T Consensus 504 ~~~~~~l~ 511 (822)
T PRK14574 504 ELLTDDVI 511 (822)
T ss_pred HHHHHHHH
Confidence 65554443
No 144
>PRK08059 general stress protein 13; Validated
Probab=98.95 E-value=2.6e-09 Score=109.18 Aligned_cols=80 Identities=30% Similarity=0.417 Sum_probs=74.8
Q ss_pred cccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 631 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 631 ~~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
++++++|+++.|.|++++++|+||++.+++.||+|.+++++.++.++.+.|++||.|+|+|+++|++++++.||++....
T Consensus 2 ~~~~k~G~iv~G~V~~i~~~G~fV~i~~~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~~~ 81 (123)
T PRK08059 2 MSQYEVGSVVTGKVTGIQPYGAFVALDEETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRATEE 81 (123)
T ss_pred cccCCCCCEEEEEEEEEecceEEEEECCCCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEccc
Confidence 34588999999999999999999999999999999999999888888899999999999999999999999999998754
No 145
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.95 E-value=2.5e-09 Score=98.06 Aligned_cols=69 Identities=30% Similarity=0.518 Sum_probs=65.8
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeec
Q 000236 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk 706 (1810)
|+++.|+|++++++|+||++.+++.||+|.+++++.++.++.+.|++||.++|+|+++|+ ++++.||+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGGGISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECCCCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 788999999999999999999999999999999998888999999999999999999998 899999985
No 146
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=98.94 E-value=3.7e-09 Score=99.60 Aligned_cols=71 Identities=34% Similarity=0.601 Sum_probs=65.6
Q ss_pred CcEEEEEEEEEeeceEEEEEeCC--ceeEEEeccccCcccc-cCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000236 1344 GDIVIGQIKRVESYGLFITIENT--NLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416 (1810)
Q Consensus 1344 G~~v~G~V~~i~~~G~fV~l~~~--~v~gl~~~sel~~~~~-~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~ 1416 (1810)
|+++.|+|+++.+||+||+|++. +++||+|++++++.+. .++.+.|++||.|+++|+++| ++++.||+|..
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~ 74 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDV 74 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEec
Confidence 78999999999999999999842 6999999999999886 888899999999999999999 89999999874
No 147
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.94 E-value=3.1e-09 Score=96.60 Aligned_cols=67 Identities=27% Similarity=0.477 Sum_probs=61.7
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeec
Q 000236 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk 706 (1810)
|+.+.|+|.++.++|+||+| +|+.||+|.+++++.+..++.. .+||.+.|+|+++|++++++.||.|
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-EGVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 78899999999999999999 8999999999999887777765 4899999999999999999999975
No 148
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.92 E-value=4.1e-07 Score=102.32 Aligned_cols=265 Identities=15% Similarity=0.091 Sum_probs=204.1
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccc----hhhHH----HHHHHHHHHHH
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE----ENEKL----NIWVAYFNLEN 1611 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~----e~e~~----~lW~~yl~le~ 1611 (1810)
-+...-+..++++.|...|+-..+.+.-+..++.+|++++|.+-|...|...|..+ -++++ ..|...-.+-.
T Consensus 85 mGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 85 MGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred hcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 45577788899999999999999999999999999999999999999997666432 12222 34544333333
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHH
Q 000236 1612 EYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQA 1689 (1810)
Q Consensus 1612 ~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ 1689 (1810)
.+++.+-..|.+.....++..|.. .+|...+..|...|....|..-+..+-+.-.++.+.++...+.++.. +.+.+..
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 343325688999999999999987 99999999999999999999999999998889999999999999999 9999999
Q ss_pred HHHHHHHhCCCCChH-HHHHHHHH---------HHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChH
Q 000236 1690 VVQRALLSLPRHKHI-KFISQTAI---------LEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEIRLGDVD 1755 (1810)
Q Consensus 1690 ll~ralk~~p~~~~~-~~~~~~a~---------l~~~~g~~e~Ar~lfe~al~~~P~~~~----lw~~ya~~e~k~gd~e 1755 (1810)
..+.||+.+|.++.. ..|..+-. -..+.+++-++.+-.++.++..|.-+. .......++...|++-
T Consensus 245 ~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 245 EIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 999999999998632 11222111 123567888999999999999998433 4555566677889999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000236 1756 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807 (1810)
Q Consensus 1756 ~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~~ 1807 (1810)
+|.+.+.++|. +.|.+. ..+....+...-.-.++.|..-|++|.++-++
T Consensus 325 eAiqqC~evL~--~d~~dv-~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 325 EAIQQCKEVLD--IDPDDV-QVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHh--cCchHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 99999999998 777776 34444443333333477788888888776543
No 149
>PHA02945 interferon resistance protein; Provisional
Probab=98.92 E-value=4e-09 Score=95.78 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=67.6
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCC-ceeEEEecccc--CcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSEL--SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l~~~-~v~gl~~~sel--~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~ 1416 (1810)
..+|+++.|+|+. .+||+||.|.+- +.+|++|+|++ +..++++ .+.+ +||+|.++|+.+|+.++.|.||||.-
T Consensus 9 P~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V 84 (88)
T PHA02945 9 PNVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRM 84 (88)
T ss_pred CCCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEc
Confidence 3689999999999 999999999864 89999999955 9999999 8889 99999999999999999999999973
No 150
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.92 E-value=3.9e-09 Score=96.78 Aligned_cols=69 Identities=35% Similarity=0.783 Sum_probs=65.3
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeec
Q 000236 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414 (1810)
Q Consensus 1344 G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk 1414 (1810)
|+++.|+|+++.++|+||.+.+ +..|++|.+++++.++.++.+.|++||.++++|+++|. ++++.||+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGG-GISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECC-CCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 7899999999999999999986 79999999999999888888999999999999999998 899999986
No 151
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=2.3e-07 Score=111.16 Aligned_cols=201 Identities=11% Similarity=0.019 Sum_probs=165.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000236 1558 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1636 (1810)
Q Consensus 1558 P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1636 (1810)
|+...+|-.+-+.+...+..++|..++++++...|.. ..+|.....+...++. ..+++...++++++.+|.. .
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~-----ytaW~~R~~iL~~L~~-~l~eeL~~~~~~i~~npknyq 107 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGN-----YTVWHFRRLCLEALDA-DLEEELDFAEDVAEDNPKNYQ 107 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh-----HHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHCCcchH
Confidence 3444555555555666778899999999999776632 4689888777777774 2588999999999999986 8
Q ss_pred HHHHHHHHHHHhCCh--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000236 1637 VHLALLGLYERTEQN--KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1713 (1810)
Q Consensus 1637 i~~~l~~~~~~~g~~--~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l 1713 (1810)
+|.....++.+.++. +++.+.+++++...+.+..+|...+-.+... ++++|.+.+.++|+.+|.+. .+|...+.+
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~--sAW~~R~~v 185 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN--SAWNQRYFV 185 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch--hHHHHHHHH
Confidence 999999888888874 7789999999999999999999999988888 99999999999999999885 788888877
Q ss_pred HHHc---CC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHh
Q 000236 1714 EFKN---GV----ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1714 ~~~~---g~----~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~----gd~e~ar~lferal~ 1766 (1810)
..+. |. .+++.....+++..+|++..+|..+..++... +....|...+.+++.
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 6655 22 35788888899999999999999998888763 445668888999887
No 152
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=98.91 E-value=4.3e-09 Score=99.17 Aligned_cols=72 Identities=31% Similarity=0.505 Sum_probs=66.2
Q ss_pred CCEEEEEEEEEecCeEEEEEC---CCeEEEeeCCccCcccc-cCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 637 NSVVHGYVCNIIETGCFVRFL---GRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~---~gv~Glv~~s~ls~~~~-~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
|+++.|.|++++++|+||++. +++.||+|.+++++.+. .++...|++||.|+|+|+++| .+++.||+|....
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~~~ 76 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDVDQ 76 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEeccc
Confidence 678999999999999999998 47999999999998876 888899999999999999999 8999999987643
No 153
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=4.6e-08 Score=127.75 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000236 1635 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1713 (1810)
Q Consensus 1635 ~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l 1713 (1810)
-..+..++.+..+.|.+++|..++++++...|++..++..++..+.+. ++++|+..+++++...|.+ ......+|..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~--~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS--AREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC--HHHHHHHHHH
Confidence 488889999999999999999999999999999999999999999999 9999999999999998887 4788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1714 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1714 ~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
+.+.|++++|..+|++++...|.+..+|..|+..+...|+.+.|...|++|+.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999998888899999999999999999999999999998
No 154
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=4e-07 Score=102.46 Aligned_cols=223 Identities=17% Similarity=0.132 Sum_probs=180.0
Q ss_pred HhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHH
Q 000236 1572 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-----KKVHLALLGLYE 1646 (1810)
Q Consensus 1572 ~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~-----~~i~~~l~~~~~ 1646 (1810)
+-....|+|.+.|-..++..| +....-+++.+++.+-| ..+.|..+.+-.+..-+. .-....++.=|.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~-----~t~e~~ltLGnLfRsRG--EvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDP-----ETFEAHLTLGNLFRSRG--EVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCc-----hhhHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 344677899999999887433 44568899999999999 569999998887765443 156778899999
Q ss_pred HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChH---HHHHHHHHHHHHcCCHHH
Q 000236 1647 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI---KFISQTAILEFKNGVADR 1722 (1810)
Q Consensus 1647 ~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~---~~~~~~a~l~~~~g~~e~ 1722 (1810)
..|-++.|..+|..+.........+.-.+..+|-.. .+++|.+.-++..+.-++...+ .+|-.+|+.+....+.++
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999999999875555677788888888888 9999999999998888776443 456666666777789999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000236 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802 (1810)
Q Consensus 1723 Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl 1802 (1810)
|+.++.+|++.+|++..+-+..++++...|+++.|...+++++. -.|.-...+..+...-....|+.++....+.++.
T Consensus 199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e--Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE--QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 3444333445555555666788888877777775
Q ss_pred H
Q 000236 1803 E 1803 (1810)
Q Consensus 1803 ~ 1803 (1810)
+
T Consensus 277 ~ 277 (389)
T COG2956 277 E 277 (389)
T ss_pred H
Confidence 5
No 155
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1.4e-07 Score=117.60 Aligned_cols=269 Identities=17% Similarity=0.261 Sum_probs=181.2
Q ss_pred HHHHHHHHHhccC-CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHhcCccchhhHHH
Q 000236 1530 EIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADVEKARSIAERALQTINIREENEKLN 1601 (1810)
Q Consensus 1530 ~~~~~e~~~~~~~-~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~-------~~~~d~Ar~v~eral~~~~~~~e~e~~~ 1601 (1810)
+|..++.-+.... .++....|++++ .+.++..+|..|+.|... .++++.-|.+|+||++...++-. +-..
T Consensus 152 ~Wl~d~~~mt~s~~~~~v~~~~ekal-~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~ 229 (881)
T KOG0128|consen 152 EWLKDELSMTQSEERKEVEELFEKAL-GDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAA 229 (881)
T ss_pred HHHHHHHhhccCcchhHHHHHHHHHh-cccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHH
Confidence 4666665554333 666677888885 567899999999999863 35799999999999987766543 4457
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcC-----------------------------------------------C
Q 000236 1602 IWVAYFNLENEYGNP-PEEAVVKVFQRALQYC-----------------------------------------------D 1633 (1810)
Q Consensus 1602 lW~~yl~le~~~g~~-~~e~a~~vferAl~~~-----------------------------------------------~ 1633 (1810)
+|..|..++..+-.. ..+....+|.+.+... +
T Consensus 230 ~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~ 309 (881)
T KOG0128|consen 230 IWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEP 309 (881)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhH
Confidence 888888876644210 1133444444444322 2
Q ss_pred C-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-c----------------------------
Q 000236 1634 P-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q---------------------------- 1683 (1810)
Q Consensus 1634 ~-~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~---------------------------- 1683 (1810)
. ...|..|+++...+|.+-....+++|++..+..+...|+.|+.++-.. +
T Consensus 310 ~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rall 389 (881)
T KOG0128|consen 310 IKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALL 389 (881)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHH
Confidence 2 156777777788888888888888888888877788888877765433 2
Q ss_pred ---------------------------------------------HHHHHHHHHHHHHhCC------CCChHHHHHHHHH
Q 000236 1684 ---------------------------------------------QEGVQAVVQRALLSLP------RHKHIKFISQTAI 1712 (1810)
Q Consensus 1684 ---------------------------------------------~~~A~~ll~ralk~~p------~~~~~~~~~~~a~ 1712 (1810)
++..++.|++|...+. ......+...+|+
T Consensus 390 AleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~ 469 (881)
T KOG0128|consen 390 ALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQ 469 (881)
T ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 1112222222222111 0111345666666
Q ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000236 1713 LEFKN-GVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1790 (1810)
Q Consensus 1713 l~~~~-g~~e~Ar~lfe~al~~~P~~~~-lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~ 1790 (1810)
+|... ++++.||.+++..+...-.+.. .|..|++++...|+...+|.++.+|+.....|.....+...|..||.++|+
T Consensus 470 ~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gt 549 (881)
T KOG0128|consen 470 VEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGT 549 (881)
T ss_pred HHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhcccc
Confidence 66644 4788888888887766655666 899999999999999999998888888666666566788888889999999
Q ss_pred HHHHHHHHHH
Q 000236 1791 EERIEYVKQK 1800 (1810)
Q Consensus 1791 ~~~a~~v~~r 1800 (1810)
++....+-++
T Consensus 550 l~~~~~~~~~ 559 (881)
T KOG0128|consen 550 LESFDLCPEK 559 (881)
T ss_pred HHHHhhhHHh
Confidence 8876544443
No 156
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.90 E-value=2.6e-07 Score=115.17 Aligned_cols=246 Identities=15% Similarity=0.175 Sum_probs=180.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhH--H-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000236 1558 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK--L-NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634 (1810)
Q Consensus 1558 P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~--~-~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~ 1634 (1810)
|.-......++..+..+|++++|...+++|++.+-.+-..+. + ..-..+..++...+++ .+|..+|++|++....
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~--~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKY--DEAVNLYEEALTIREE 273 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHHH
Confidence 444444456888889999999999999999986311100000 1 2223466777788854 9999999999987632
Q ss_pred ---------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC-----CCH---HHHHHHHHHHHHh-cHHHHHHHHHHHHH
Q 000236 1635 ---------KKVHLALLGLYERTEQNKLADELLYKMIKKFK-----HSC---KVWLRRVQRLLKQ-QQEGVQAVVQRALL 1696 (1810)
Q Consensus 1635 ---------~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~-----~~~---~~w~~~a~~~~~~-~~~~A~~ll~ralk 1696 (1810)
-.++..++.+|...|++.+|...+++++.++. ..+ ......+..+..+ ++++|..+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 17888999999999999999999999998763 223 3344555555555 99999999999988
Q ss_pred hCC---CCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC-----CHHHHHHHHHHHHHcCChHHHHHHH
Q 000236 1697 SLP---RHKH---IKFISQTAILEFKNGVADRGRSMFEGILSEY----PK-----RTDLWSIYLDQEIRLGDVDLIRGLF 1761 (1810)
Q Consensus 1697 ~~p---~~~~---~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~----P~-----~~~lw~~ya~~e~k~gd~e~ar~lf 1761 (1810)
..- ...+ ..++.++|.+++..|++++|+++|++|++.. -+ ...+|.. +..+.+.+.+..|-.+|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l-a~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL-AEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH-HHHHHHhcccchHHHHH
Confidence 653 3333 4789999999999999999999999999765 21 2335554 55557888888888888
Q ss_pred HHHHhc-----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000236 1762 ERAISL-----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807 (1810)
Q Consensus 1762 eral~~-----~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~~ 1807 (1810)
+++..- ...|.-. ..+..........|+++.|..+-++++.+=+.
T Consensus 433 ~~~~~i~~~~g~~~~~~~-~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVT-YTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HHHHHHHHHhCCCCCchH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 888761 1223333 56677777788999999999999998876554
No 157
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=98.90 E-value=3.3e-09 Score=97.00 Aligned_cols=68 Identities=31% Similarity=0.440 Sum_probs=64.5
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEe
Q 000236 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lS 704 (1810)
|+.+.|+|++++++|+||++.++..||+|.+++++.+..++...|++||.++|+|+++|++++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGVKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCCCCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 67899999999999999999999999999999999888888889999999999999999999999876
No 158
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=98.88 E-value=4.7e-09 Score=95.92 Aligned_cols=68 Identities=31% Similarity=0.603 Sum_probs=64.0
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000236 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1412 (1810)
Q Consensus 1344 G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~ls 1412 (1810)
|+++.|+|+++.++|+||++.+ +..|++|.+++++.+..++.+.|++||.++|+|+++|++++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~-~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGV-KQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCC-CCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 7899999999999999999986 7999999999999988888889999999999999999999999875
No 159
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=2.2e-07 Score=107.08 Aligned_cols=258 Identities=14% Similarity=0.073 Sum_probs=159.8
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHcC-CCCHHHHHHHHHHH-HhcC-CHHHHHHHHHHHHHhcCccchhhHHHHHHHH
Q 000236 1530 EIRAAEERLLEKDAPRTPDEFERLVRSS-PNSSFVWIKYMAFM-LSMA-DVEKARSIAERALQTINIREENEKLNIWVAY 1606 (1810)
Q Consensus 1530 ~~~~~e~~~~~~~~~~a~~~fer~l~~~-P~~~~~W~~y~~~~-~~~~-~~d~Ar~v~eral~~~~~~~e~e~~~lW~~y 1606 (1810)
++.++-+-+-+++.+.+++.+.-+-..+ ...+.+-..+..++ ++-| ++..|....+.|+....+.. .....-
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~-----~a~~nk 496 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA-----AALTNK 496 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH-----HHhhcC
Confidence 3444334344455555555444332221 11222233333333 3333 67777777777774322211 112222
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cH
Q 000236 1607 FNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQ 1684 (1810)
Q Consensus 1607 l~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~ 1684 (1810)
.+.....| +.++|.+.|++|+....+ -...+..+-.++..|+.++|.+.|-++-....++.++.+.++.+|.-. +.
T Consensus 497 gn~~f~ng--d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 497 GNIAFANG--DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CceeeecC--cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 23333344 567888888888765443 256666666777778888888888777777677788888888877777 88
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000236 1685 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1764 (1810)
Q Consensus 1685 ~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lfera 1764 (1810)
.+|.++|-++....|.. +.++.++|.+|-+.|+-.+|-+++-...+.+|.+.+....++.+++...-.+++...||+|
T Consensus 575 aqaie~~~q~~slip~d--p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPND--PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhcccCCCC--HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888887777776 4777888888878888777777777777777777776555556666555667777777777
Q ss_pred HhcCCCchhHHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 000236 1765 ISLSLPPKKMKFLFKKYLEY-EKSVGEEERIEYVKQK 1800 (1810)
Q Consensus 1765 l~~~~~p~~~~~lw~~yl~~-E~~~G~~~~a~~v~~r 1800 (1810)
.- +.|... -|..++.- .++.|++.+|..+|..
T Consensus 653 al--iqp~~~--kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 653 AL--IQPNQS--KWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred Hh--cCccHH--HHHHHHHHHHHhcccHHHHHHHHHH
Confidence 76 555554 45555543 5566777777666654
No 160
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.88 E-value=5e-08 Score=103.54 Aligned_cols=124 Identities=11% Similarity=-0.027 Sum_probs=111.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCC
Q 000236 1622 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1700 (1810)
Q Consensus 1622 ~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1700 (1810)
..+|++|++..|.. |..++..+.+.|++++|...|++++...|.+..+|..++..+.+. ++++|...|++|+...|.
T Consensus 13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56899999998875 667888899999999999999999999999999999999999999 999999999999999988
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000236 1701 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1749 (1810)
Q Consensus 1701 ~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~ 1749 (1810)
+ ..+|..+|..+...|++++|+..|++++...|+++..|...+....
T Consensus 91 ~--~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 H--PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred C--cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 7 4899999999999999999999999999999999999977666543
No 161
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=2.1e-07 Score=108.16 Aligned_cols=188 Identities=11% Similarity=-0.005 Sum_probs=145.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000236 1557 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1635 (1810)
Q Consensus 1557 ~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~- 1635 (1810)
++.....|+..+..+...++++.|...|++++...|... .....|...+..+...+ +.+.|...|+++++..|..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~a~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP--YAEQAQLDLAYAYYKSG--DYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHCcCCC
Confidence 356778888889999999999999999999998776432 12246777888888888 4599999999999988864
Q ss_pred ---HHHHHHHHHHHHh--------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhCCCCChH
Q 000236 1636 ---KVHLALLGLYERT--------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHI 1704 (1810)
Q Consensus 1636 ---~i~~~l~~~~~~~--------g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~p~~~~~ 1704 (1810)
..|+.++.++.+. +++++|...|++++..+|.+...|..+..... +...+ .
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~------~~~~~------------~ 166 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY------LRNRL------------A 166 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH------HHHHH------------H
Confidence 3577777777665 77889999999999999888777654443211 11111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1705 KFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1705 ~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~---~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
......|.++++.|++++|...|++++..+|++ ..+|...+..+.+.|++++|..+|+.+..
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 223467788999999999999999999998875 46899999999999999999999888776
No 162
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.86 E-value=6.2e-08 Score=119.29 Aligned_cols=220 Identities=14% Similarity=0.136 Sum_probs=145.3
Q ss_pred CCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000236 1558 PNSSFVW---IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634 (1810)
Q Consensus 1558 P~~~~~W---~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~ 1634 (1810)
|.-+..| ..|+..+++.|-...|..+|+|. .+|-..+.+|...| +..+|..+..+-++..|.
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl-------------emw~~vi~CY~~lg--~~~kaeei~~q~lek~~d 456 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL-------------EMWDPVILCYLLLG--QHGKAEEINRQELEKDPD 456 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-------------HHHHHHHHHHHHhc--ccchHHHHHHHHhcCCCc
Confidence 3445556 46777788888888888887764 47888888988888 558888888888884444
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000236 1635 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1713 (1810)
Q Consensus 1635 ~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l 1713 (1810)
...|..++++..+.--|++|.+++.... ..+-..++.....+ ++++|.+.|+++++..|-. ...|+.++.+
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~s------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ 528 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYIS------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGLGCA 528 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhhh------HHHHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhccHH
Confidence 4667777776544444455554443332 22333344444445 6777777777777766655 4667777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHH
Q 000236 1714 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1793 (1810)
Q Consensus 1714 ~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~ 1793 (1810)
..+.++...|...|.+++...|++...|+.+.-.+++.++..+|+..+.+|+. +...+. .+|..|+..-.+.|.+++
T Consensus 529 ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK--cn~~~w-~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK--CNYQHW-QIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh--cCCCCC-eeeechhhhhhhcccHHH
Confidence 77777777777777777777777777777777777777777777777777776 443444 467777666666777777
Q ss_pred HHHHHHHHHH
Q 000236 1794 IEYVKQKAME 1803 (1810)
Q Consensus 1794 a~~v~~rAl~ 1803 (1810)
|...|.|-+.
T Consensus 606 a~~A~~rll~ 615 (777)
T KOG1128|consen 606 AIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHH
Confidence 7666666554
No 163
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.85 E-value=1.4e-07 Score=123.29 Aligned_cols=158 Identities=13% Similarity=0.058 Sum_probs=116.3
Q ss_pred HHHHHhCChHHHHHHHHH---HHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000236 1643 GLYERTEQNKLADELLYK---MIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1718 (1810)
Q Consensus 1643 ~~~~~~g~~~~A~~~~e~---~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g 1718 (1810)
++..+++....+.+.+-+ ....|++..++++.+|....+. .+++|..+++++++..|.+ ..++..||..+.+.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--~~a~~~~a~~L~~~~ 134 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--SEAFILMLRGVKRQQ 134 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHhc
Confidence 344444444443333333 3456777788888888888877 8888888888888888777 478888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000236 1719 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1798 (1810)
Q Consensus 1719 ~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~ 1798 (1810)
.+++|+..++++++..|++......++.++.+.|++++|..+|++++. ..|+.. ..|..|....++.|+.++|...|
T Consensus 135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~-~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR--QHPEFE-NGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcH-HHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888887 444555 57777777777888888888888
Q ss_pred HHHHHHH
Q 000236 1799 QKAMEYV 1805 (1810)
Q Consensus 1799 ~rAl~~v 1805 (1810)
++|++..
T Consensus 212 ~~a~~~~ 218 (694)
T PRK15179 212 QAGLDAI 218 (694)
T ss_pred HHHHHhh
Confidence 8886643
No 164
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.85 E-value=1e-08 Score=93.24 Aligned_cols=67 Identities=30% Similarity=0.370 Sum_probs=60.1
Q ss_pred CcEEEEEEEEEeeceEEEEEcCCeEEEeeccccCCCCCCCCCcCccCCCEEEEEEEEEeCCCCeEEEEEe
Q 000236 461 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 530 (1810)
Q Consensus 461 g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k 530 (1810)
|+++.|+|+++.++|++|+| +|+.||+|.+++++....++.+ .+||.++|+|+++|.+++++.||.+
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-EGVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 78999999999999999999 8999999999998775555544 3899999999999999999999974
No 165
>PHA02945 interferon resistance protein; Provisional
Probab=98.85 E-value=1e-08 Score=93.12 Aligned_cols=72 Identities=17% Similarity=0.314 Sum_probs=66.4
Q ss_pred CCCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCcc--CcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000236 635 HPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKA--VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709 (1810)
Q Consensus 635 ~~G~~~~G~V~~i~~~G~fV~f~--~gv~Glv~~s~l--s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~ 709 (1810)
.+|+.+.|+|.. .+||+||.+. +|+.||+|+|+. +...+.+ .+++ +||+|.|+|+.+|+.++-+-||||.-.
T Consensus 10 ~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V~ 85 (88)
T PHA02945 10 NVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 85 (88)
T ss_pred CCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEcc
Confidence 579999999999 9999999987 599999999955 8888888 8889 999999999999999999999999754
No 166
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=5.3e-07 Score=98.59 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=148.0
Q ss_pred CCCcHHHHHHHHHcCCC---CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCC
Q 000236 1543 APRTPDEFERLVRSSPN---SSFVWIKYMAFM---LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1616 (1810)
Q Consensus 1543 ~~~a~~~fer~l~~~P~---~~~~W~~y~~~~---~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~ 1616 (1810)
.++-.+.+...+...+. -.+.|.-|=+.. +..++.+-|...+.+....+|.+. | +-.-++-+....+++
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~---R--V~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK---R--VGKLKAMLLEATGNY 102 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh---h--HHHHHHHHHHHhhch
Confidence 55556666666654443 367777665544 466888888888888888887655 2 333344444566644
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHH
Q 000236 1617 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1694 (1810)
Q Consensus 1617 ~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ra 1694 (1810)
+.|.++|++.++..|.+ -+|.+-+.+....|+.-+|.+.+...+++|..+.++|..++++|+.. ++++|.-+|+.+
T Consensus 103 --~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 --KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred --hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88899999999888876 67777888888888888999999999999999999999999999888 999999999998
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000236 1695 LLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKRTDLWSIY 1744 (1810)
Q Consensus 1695 lk~~p~~~~~~~~~~~a~l~~~~g---~~e~Ar~lfe~al~~~P~~~~lw~~y 1744 (1810)
+-..|.+ +....+||.+++-+| +++-||++|+++++.+|++...|+-.
T Consensus 181 ll~~P~n--~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 181 LLIQPFN--PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 8888876 377888888888776 57888999999999998777766543
No 167
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=98.84 E-value=9.7e-09 Score=93.86 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=64.4
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEee
Q 000236 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSl 705 (1810)
|+++.|+|.+++++|+||++.++..||+|.+++++.+..++.+.|++||.|+|+|+++|+ .+++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILPGKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCCCCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 678999999999999999999999999999999998888888999999999999999998 89999984
No 168
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.83 E-value=2.3e-07 Score=107.89 Aligned_cols=165 Identities=12% Similarity=0.066 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000236 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC---KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1710 (1810)
Q Consensus 1636 ~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~---~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~-~~~~~~ 1710 (1810)
..++.++..+...|++++|...|++++..+|.++ .+|+.++..+.+. ++++|...|+++++..|.+... .+|...
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 4555555555556666666666666666555443 4555666666666 6666666666666666554321 234444
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHH
Q 000236 1711 AILEFKN--------GVADRGRSMFEGILSEYPKRTDLW-----------------SIYLDQEIRLGDVDLIRGLFERAI 1765 (1810)
Q Consensus 1711 a~l~~~~--------g~~e~Ar~lfe~al~~~P~~~~lw-----------------~~ya~~e~k~gd~e~ar~lferal 1765 (1810)
+..+++. |+++.|...|++++..+|++...| ...++++++.|+++.|...|++++
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 193 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV 193 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5544443 456666666666666666654433 345777889999999999999999
Q ss_pred hcCCC--chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000236 1766 SLSLP--PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802 (1810)
Q Consensus 1766 ~~~~~--p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl 1802 (1810)
. ..| |... ..|..........|+.+++...++...
T Consensus 194 ~-~~p~~~~~~-~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 194 E-NYPDTPATE-EALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred H-HCCCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 222 2233 577788888888999999999887654
No 169
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=7e-07 Score=110.90 Aligned_cols=251 Identities=18% Similarity=0.160 Sum_probs=193.1
Q ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 000236 1545 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1624 (1810)
Q Consensus 1545 ~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~v 1624 (1810)
++...+|+++..+|+|+.+-+.++-.+..+++++.|.+...++++..+... ...|..++-+....+ +...|..+
T Consensus 462 kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~----~~~whLLALvlSa~k--r~~~Al~v 535 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDS----AKAWHLLALVLSAQK--RLKEALDV 535 (799)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHhhhh--hhHHHHHH
Confidence 356678999999999999999999999999999999999999997645433 567988888877777 45889999
Q ss_pred HHHHHhcCCCH------HHH---------------HHHHHHHH-----------------------HhCChHHHHHHHHH
Q 000236 1625 FQRALQYCDPK------KVH---------------LALLGLYE-----------------------RTEQNKLADELLYK 1660 (1810)
Q Consensus 1625 ferAl~~~~~~------~i~---------------~~l~~~~~-----------------------~~g~~~~A~~~~e~ 1660 (1810)
.+-|+...+.+ +++ ..++.+.. ...+..+|...+.+
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 99988776652 111 11111111 01122233333333
Q ss_pred HHHhc-------------C-------------CCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000236 1661 MIKKF-------------K-------------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1713 (1810)
Q Consensus 1661 ~lk~~-------------~-------------~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l 1713 (1810)
+.+.- | ...++|...+..+.+. ..++|+.++..|-+.+|-. ...|..-|..
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~--~~~~~~~G~~ 693 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS--ASVYYLRGLL 693 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh--HHHHHHhhHH
Confidence 22110 0 0146788899988888 9999999999999998776 4788888999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH--HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCH
Q 000236 1714 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL--IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1791 (1810)
Q Consensus 1714 ~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~--ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~ 1791 (1810)
+...|..++|.+.|.-++..+|..+......+.++.+.|+..- +|.++..|++ ..|.+. ..|.......++.|+.
T Consensus 694 ~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~-eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNH-EAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCH-HHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999886554 4559999998 888888 6999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000236 1792 ERIEYVKQKAMEYVE 1806 (1810)
Q Consensus 1792 ~~a~~v~~rAl~~v~ 1806 (1810)
++|..+|+-|+++-.
T Consensus 771 ~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 771 KQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999998744
No 170
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.80 E-value=1.2e-08 Score=90.58 Aligned_cols=72 Identities=26% Similarity=0.412 Sum_probs=65.5
Q ss_pred CCeEEEEEEEEecCcEEEEEEecCceeEEEecccccCcccccccccccccCCCeEeeEEEeecCCCeEEEecc
Q 000236 545 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 617 (1810)
Q Consensus 545 G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~i~~vl~id~~~~~v~ls~K 617 (1810)
|++|+|+|.++++++++|++. ..++.|++|.+||||+..+++.+.+++++||++..+++++...+.+.+|+|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l~-~~~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAIL-PEEIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCLSNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEec-CCCcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEEeccccEEEEecC
Confidence 789999999999999999993 249999999999999888999999999999999878888888888999886
No 171
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.80 E-value=1.4e-08 Score=97.51 Aligned_cols=75 Identities=23% Similarity=0.329 Sum_probs=67.1
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCc----ccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE----DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~----~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~ 1416 (1810)
.++|++|.|+|+++.++|+||.|++ +++|++|+|++++ .+..+..+.|++||.++|+|++++++ +++.||+|..
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~-~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~ 81 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINS-PYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSL 81 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCC-CeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCcc
Confidence 4799999999999999999999986 8999999999985 44466778899999999999999865 9999999875
Q ss_pred c
Q 000236 1417 Y 1417 (1810)
Q Consensus 1417 ~ 1417 (1810)
.
T Consensus 82 ~ 82 (86)
T cd05789 82 K 82 (86)
T ss_pred c
Confidence 4
No 172
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.80 E-value=1.8e-08 Score=92.05 Aligned_cols=68 Identities=40% Similarity=0.756 Sum_probs=63.8
Q ss_pred CCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000236 1343 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1412 (1810)
Q Consensus 1343 ~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~ls 1412 (1810)
+|+++.|+|.++.++|+||+|+ +++|++|.+++++.+..++.+.|++||.|+++|+++|++++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~--~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG--GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC--CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 5899999999999999999996 6999999999998888888899999999999999999999999875
No 173
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=4.3e-07 Score=112.62 Aligned_cols=259 Identities=12% Similarity=-0.029 Sum_probs=147.8
Q ss_pred cCCCCcHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHH---HHHHHHHHcC
Q 000236 1541 KDAPRTPDEFERLVRSSPNS---SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV---AYFNLENEYG 1614 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~---~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~---~yl~le~~~g 1614 (1810)
++.+.+...|.+.....|.+ ...+.-.+..+...+++++|...+++++...|... ..|. .+..+....+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-----~a~~~~~~~~~~~~~~~ 94 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-----LALKLHLGAFGLGDFSG 94 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----HHHHHhHHHHHhccccc
Confidence 34555577777776665543 44555556666777888888888888887666422 2333 1212111223
Q ss_pred CCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHH
Q 000236 1615 NPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQ 1692 (1810)
Q Consensus 1615 ~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ 1692 (1810)
....+.+.++.+....|.. ..+..++.++...|++++|...|++++...|++..++..++.++.+. ++++|..+|+
T Consensus 95 --~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~ 172 (355)
T cd05804 95 --MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFME 172 (355)
T ss_pred --CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2244444444422233322 34445666777888888888888888888887777788888888877 8888888888
Q ss_pred HHHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHH-HHHHHH---HHcCChHHHHHHHHHHH
Q 000236 1693 RALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSEYPK-RTDLWS-IYLDQE---IRLGDVDLIRGLFERAI 1765 (1810)
Q Consensus 1693 ralk~~p~~~--~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~-~~~lw~-~ya~~e---~k~gd~e~ar~lferal 1765 (1810)
+++...|... ....|..+|.++...|++++|..+|++++...|. ....+. ..+.+. ...|....+.. ++.+.
T Consensus 173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-w~~~~ 251 (355)
T cd05804 173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR-WEDLA 251 (355)
T ss_pred hhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH-HHHHH
Confidence 8887765321 2345667778888888888888888887655552 222222 221111 22343333333 34444
Q ss_pred hcCCC--chhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000236 1766 SLSLP--PKKM-KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807 (1810)
Q Consensus 1766 ~~~~~--p~~~-~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~~ 1807 (1810)
....+ +... ...+..+.......|+.+.+..+.++...+.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~ 296 (355)
T cd05804 252 DYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASS 296 (355)
T ss_pred HHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 41100 1000 011222333345567777777777777665543
No 174
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=98.79 E-value=1.1e-08 Score=130.22 Aligned_cols=71 Identities=27% Similarity=0.595 Sum_probs=65.8
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccC----cccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000236 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS----EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1412 (1810)
Q Consensus 1340 ~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~----~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~ls 1412 (1810)
.+++|++|.|+|++|.+||+||+|.+ +++||+|+||++ +.++.++.+.|++||.|+++|+++| +++||+|+
T Consensus 644 ~~~vG~i~~GkV~~I~dfGaFVel~~-G~eGLvHISeisdls~~~rv~~~~dv~kvGd~V~VKVl~ID-~~gKI~L~ 718 (719)
T TIGR02696 644 MPEVGERFLGTVVKTTAFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLSVGQKIQVEIADID-DRGKLSLV 718 (719)
T ss_pred cCCCCCEEEEEEEEEECceEEEEecC-CceEEEEhhhccccccccCcCCHHHcCCCCCEEEEEEEEEC-CCCCeeec
Confidence 47999999999999999999999986 899999999996 4678899999999999999999999 58899886
No 175
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=5.3e-07 Score=103.92 Aligned_cols=228 Identities=15% Similarity=0.118 Sum_probs=178.2
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccc------------------------
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE------------------------ 1595 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~------------------------ 1595 (1810)
.++..+|...|++....+|++...--.|+-.+.+.|++++...+-.+.+.......
T Consensus 245 ~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 245 NGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred hcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 56677777777777777777666666666665555555554444444432211100
Q ss_pred -----hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH
Q 000236 1596 -----ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1669 (1810)
Q Consensus 1596 -----e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~ 1669 (1810)
+......++.-.++..+.+ ..+.|.-.|+.|....|.+ ..|.-+...|...+++.+|..+-..+++.++++.
T Consensus 325 K~I~~~~r~~~alilKG~lL~~~~--R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA 402 (564)
T KOG1174|consen 325 KCIDSEPRNHEALILKGRLLIALE--RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA 402 (564)
T ss_pred HHhccCcccchHHHhccHHHHhcc--chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence 0001234566667777788 4588999999999999876 9999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHh--cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000236 1670 KVWLRRV-QRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1746 (1810)
Q Consensus 1670 ~~w~~~a-~~~~~~--~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~ 1746 (1810)
+....++ ..++.. -.++|..+++++|+..|.. ..+....|.++...|..+.+..++++.|..+|+. .+...+++
T Consensus 403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd 479 (564)
T KOG1174|consen 403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY--TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGD 479 (564)
T ss_pred hhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc--HHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHH
Confidence 9988885 666666 7899999999999999987 5899999999999999999999999999999974 68889999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000236 1747 QEIRLGDVDLIRGLFERAISLSLPPKKM 1774 (1810)
Q Consensus 1747 ~e~k~gd~e~ar~lferal~~~~~p~~~ 1774 (1810)
+....+.+++|...|..|++ ..|++-
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 99999999999999999999 666654
No 176
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.78 E-value=4.8e-07 Score=120.54 Aligned_cols=199 Identities=10% Similarity=-0.003 Sum_probs=163.8
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000236 1555 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1634 (1810)
Q Consensus 1555 ~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~ 1634 (1810)
...|+.+..-+..+-...++|+++.|++.|+++++..|... ..++ .++.++...|+ .+.|+..+++|+.-.|.
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~----~av~-dll~l~~~~G~--~~~A~~~~eka~~p~n~ 100 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS----GQVD-DWLQIAGWAGR--DQEVIDVYERYQSSMNI 100 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch----hhHH-HHHHHHHHcCC--cHHHHHHHHHhccCCCC
Confidence 34678888777777888899999999999999998777431 1123 77777777784 59999999999932222
Q ss_pred -HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000236 1635 -KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1712 (1810)
Q Consensus 1635 -~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~ 1712 (1810)
......++.+|...|++++|.++|+++++..|+++.++..++..+.+. +.++|.+.++++.+..|... .+...+.
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~---~~l~lay 177 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ---NYMTLSY 177 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH---HHHHHHH
Confidence 255555688999999999999999999999999999999999999999 99999999999999998853 3355566
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000236 1713 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1763 (1810)
Q Consensus 1713 l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lfer 1763 (1810)
++...++..+|...|++++..+|.+.+++..|...+.+.|-...|..+..+
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 666677777799999999999999999999999999999988887776654
No 177
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=98.78 E-value=2.1e-08 Score=91.68 Aligned_cols=68 Identities=38% Similarity=0.747 Sum_probs=63.6
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEee
Q 000236 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413 (1810)
Q Consensus 1344 G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lsl 1413 (1810)
|+++.|+|.++.++|+||+|.+ +..|++|++++++.++.++.+.|++||.|+++|+++|+ ++++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILP-GKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCC-CCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 6889999999999999999986 79999999999999888888899999999999999998 89999874
No 178
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=98.78 E-value=2.1e-08 Score=92.56 Aligned_cols=72 Identities=36% Similarity=0.522 Sum_probs=67.5
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeec
Q 000236 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706 (1810)
Q Consensus 635 ~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk 706 (1810)
++|+.+.|.|.+++++|+||++.+++.||+|.+++++.+..++...|++||.++|+|++++++++++.||++
T Consensus 1 ~~G~~v~g~V~~v~~~g~~v~i~~~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 1 EVGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCCEEEEEEEEEEccEEEEEeCCCCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 369999999999999999999998999999999999887778888899999999999999999999999975
No 179
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=1.1e-06 Score=109.88 Aligned_cols=221 Identities=18% Similarity=0.169 Sum_probs=138.1
Q ss_pred HHHHcCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCC-----CCHHHHHH
Q 000236 1552 RLVRSSPNSSFVWIKYMAFML---SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN-----PPEEAVVK 1623 (1810)
Q Consensus 1552 r~l~~~P~~~~~W~~y~~~~~---~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~-----~~~e~a~~ 1623 (1810)
.+-...|.++.+|..|+.-+. +..+...+.+.|++|+.... .+.+|..|+++...+++ .+.+..+.
T Consensus 138 ~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~------~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~ 211 (881)
T KOG0128|consen 138 EMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN------SVPIWEEVVNYLVGFGNVAKKSEDYKKERS 211 (881)
T ss_pred HHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc------cchHHHHHHHHHHhccccccccccchhhhH
Confidence 333446778888887776653 33566777778888875333 25678888887776554 14567788
Q ss_pred HHHHHHhcCCC-----HHHHHHHHHH---HHHhCChHHHHHHHHHHHHhcC-CCHHHHHHHH----HHHHH-h-cHHHH-
Q 000236 1624 VFQRALQYCDP-----KKVHLALLGL---YERTEQNKLADELLYKMIKKFK-HSCKVWLRRV----QRLLK-Q-QQEGV- 1687 (1810)
Q Consensus 1624 vferAl~~~~~-----~~i~~~l~~~---~~~~g~~~~A~~~~e~~lk~~~-~~~~~w~~~a----~~~~~-~-~~~~A- 1687 (1810)
+|+||+..... ..+|..|..+ |..+-..++...+|.+.++..- .....|-.+- .++.. . +++.|
T Consensus 212 vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~ 291 (881)
T KOG0128|consen 212 VFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDAL 291 (881)
T ss_pred HHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHH
Confidence 88888866543 2566555553 3334444555566666554321 1111111111 11111 1 33333
Q ss_pred ------HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCChHHHHHH
Q 000236 1688 ------QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE-IRLGDVDLIRGL 1760 (1810)
Q Consensus 1688 ------~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e-~k~gd~e~ar~l 1760 (1810)
+..|++.++.+|.. ...|..|..++++.|++-+-..+++|++..++.+.++|..|..+. ..++-.+++-..
T Consensus 292 ~~l~~~~~~~e~~~q~~~~~--~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~ 369 (881)
T KOG0128|consen 292 KNLAKILFKFERLVQKEPIK--DQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSV 369 (881)
T ss_pred HHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccc
Confidence 33344455555444 378999999999999999999999999999998899999887766 355666677777
Q ss_pred HHHHHhcCCCchhHHHHHHHHHH
Q 000236 1761 FERAISLSLPPKKMKFLFKKYLE 1783 (1810)
Q Consensus 1761 feral~~~~~p~~~~~lw~~yl~ 1783 (1810)
+-|++. .+|..- ++|.+|+.
T Consensus 370 ~~ra~R--~cp~tg-dL~~rall 389 (881)
T KOG0128|consen 370 HPRAVR--SCPWTG-DLWKRALL 389 (881)
T ss_pred cchhhc--CCchHH-HHHHHHHH
Confidence 888777 555555 68888873
No 180
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=2.4e-07 Score=103.79 Aligned_cols=117 Identities=11% Similarity=0.142 Sum_probs=81.6
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH-HHcCC--HHHH
Q 000236 1648 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE-FKNGV--ADRG 1723 (1810)
Q Consensus 1648 ~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~-~~~g~--~e~A 1723 (1810)
.++.+++...|+++++..|++...|..++..+... ++++|...|++|++..|.+ ..++..+|..+ +..|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~--~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN--AELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455666667777777777777777777777777 7777777777777777665 46777777643 45555 4777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1724 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1724 r~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
+.+|+++++.+|++..+|+.++..++..|++++|...|++++.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777777777777777777777777777777777776
No 181
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=8.8e-07 Score=102.22 Aligned_cols=221 Identities=12% Similarity=0.083 Sum_probs=176.0
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000236 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1622 (1810)
Q Consensus 1543 ~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~ 1622 (1810)
...+...-+.++..+..|+.+...-+.....+|++++|.+.|..||.... .+........--+..+| ..++|.
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda-----sc~ealfniglt~e~~~--~ldeal 544 (840)
T KOG2003|consen 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA-----SCTEALFNIGLTAEALG--NLDEAL 544 (840)
T ss_pred hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-----HHHHHHHHhcccHHHhc--CHHHHH
Confidence 66777777788888888888888888888889999999999999995422 22223333333445667 568899
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCC
Q 000236 1623 KVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1700 (1810)
Q Consensus 1623 ~vferAl~~~~~-~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1700 (1810)
+.|-+.-...-. -.+..+++++|+...+..+|.++|.++....|.++.+...++.+|-+. +..+|.+++-..-..+|.
T Consensus 545 d~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 545 DCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc
Confidence 988887655443 389999999999999999999999999999999999999999999988 999999999998889988
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000236 1701 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1774 (1810)
Q Consensus 1701 ~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~ 1774 (1810)
+ +...--+|.+|....-.+.|..+||++--..|+....-+..+.+..+.|++++|..+|...-. ++| .+.
T Consensus 625 n--ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfp-edl 694 (840)
T KOG2003|consen 625 N--IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFP-EDL 694 (840)
T ss_pred c--hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCc-cch
Confidence 7 455555566677777789999999999888887544334456677899999999999998776 444 444
No 182
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.76 E-value=2.1e-08 Score=91.67 Aligned_cols=68 Identities=29% Similarity=0.405 Sum_probs=63.8
Q ss_pred CCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEe
Q 000236 636 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704 (1810)
Q Consensus 636 ~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lS 704 (1810)
+|+.+.|+|.+++++|+||++. ++.|++|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~-~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG-GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC-CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 4889999999999999999995 7999999999998888889999999999999999999999999886
No 183
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=8.5e-09 Score=112.74 Aligned_cols=75 Identities=33% Similarity=0.659 Sum_probs=71.3
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeC-CceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecc
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l~~-~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~ 1415 (1810)
..+|++|-|+|++|.+||+||.|+. +|++|++|+||++..+++++.+.+++||.|-|+|+++|++++.|.||||.
T Consensus 9 PeeGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkr 84 (269)
T COG1093 9 PEEGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKR 84 (269)
T ss_pred CCCCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhh
Confidence 3589999999999999999999984 37999999999999999999999999999999999999999999999987
No 184
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.
Probab=98.76 E-value=3.3e-08 Score=94.31 Aligned_cols=71 Identities=38% Similarity=0.743 Sum_probs=62.4
Q ss_pred CCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCccccc-----------CcccccCCCCEEEEEEEEEecCCCeeEE
Q 000236 1343 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKRRISL 1411 (1810)
Q Consensus 1343 ~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~-----------~~~~~~~~G~~V~~~I~~id~~~~ri~l 1411 (1810)
+|++++|+|++++++|+||+|.+.+++|++|.+++++++.. +....|++||.|+++|.++|.++++|.|
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 48899999999999999999985469999999999876421 3457899999999999999999999999
Q ss_pred ee
Q 000236 1412 GM 1413 (1810)
Q Consensus 1412 sl 1413 (1810)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
No 185
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.76 E-value=2.2e-07 Score=104.07 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHh-c--HHHHHHHH
Q 000236 1617 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL-LKQ-Q--QEGVQAVV 1691 (1810)
Q Consensus 1617 ~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~-~~~-~--~~~A~~ll 1691 (1810)
+.+++...++++++.+|.+ ..|..++.+|...|++++|...|+++++..|++..+|..++..+ .+. + .++|+++|
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4588899999999999986 99999999999999999999999999999999999999999975 555 5 69999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000236 1692 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1739 (1810)
Q Consensus 1692 ~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~ 1739 (1810)
+++++..|.+ +.++..+|..+++.|++++|...|+++++..|.+.+
T Consensus 134 ~~al~~dP~~--~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 134 DKALALDANE--VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHhCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999999987 589999999999999999999999999999987543
No 186
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=8.6e-08 Score=118.10 Aligned_cols=200 Identities=14% Similarity=0.173 Sum_probs=168.8
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000236 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1622 (1810)
Q Consensus 1543 ~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~ 1622 (1810)
...|...|||+ ..|-..+.+|...|+..+|..+..+-++..|. ..+|..++++... .
T Consensus 414 tksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d------~~lyc~LGDv~~d---------~ 470 (777)
T KOG1128|consen 414 TKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD------PRLYCLLGDVLHD---------P 470 (777)
T ss_pred HHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc------chhHHHhhhhccC---------h
Confidence 45566677766 68999999999999999999999999874332 2356666655332 3
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCC
Q 000236 1623 KVFQRALQYCDPK--KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1699 (1810)
Q Consensus 1623 ~vferAl~~~~~~--~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p 1699 (1810)
..|++|.++.+.. .....++....+.++|++|...|++.++.+|-....|+.++-+.++. +++.|.+.|.+++...|
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 3566666655543 33455566666789999999999999999999999999999999999 99999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 000236 1700 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1767 (1810)
Q Consensus 1700 ~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~ 1767 (1810)
.+. ..|.+++..+.+.++..+|+..+..|++++-++..+|.+|..+..+.|.+++|...|.|.+..
T Consensus 551 d~~--eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 551 DNA--EAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred Cch--hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 984 899999999999999999999999999999888999999999999999999999999999983
No 187
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.4e-06 Score=100.45 Aligned_cols=265 Identities=11% Similarity=0.041 Sum_probs=196.9
Q ss_pred HHHHHHHHhccCCC--CcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccch------------
Q 000236 1531 IRAAEERLLEKDAP--RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE------------ 1596 (1810)
Q Consensus 1531 ~~~~e~~~~~~~~~--~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e------------ 1596 (1810)
|...+......+.. .+...|-..+..-|+|..+...++.++...|+.++|...|+++.-..|+.-+
T Consensus 200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~e 279 (564)
T KOG1174|consen 200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQE 279 (564)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhc
Confidence 44444444344433 3333455555677999999999999999999999999999999865554311
Q ss_pred --hhHHH---------------HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHH
Q 000236 1597 --NEKLN---------------IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELL 1658 (1810)
Q Consensus 1597 --~e~~~---------------lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~ 1658 (1810)
.|+.+ -|.--+.....-. +.+.|...-+++++.++.. ..++.-++++.+.++.++|.=.|
T Consensus 280 g~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K--~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 280 GGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEK--KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred cCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhh--hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHH
Confidence 11111 1211111111111 3467777777888777765 78888888888888888888888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCC
Q 000236 1659 YKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA-ILEF-KNGVADRGRSMFEGILSEYP 1735 (1810)
Q Consensus 1659 e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a-~l~~-~~g~~e~Ar~lfe~al~~~P 1735 (1810)
..+...-|-....|--+...|+.. ++.+|..+-+.+++.+|.+. +.+..++ ..++ .-.--|+|.+.++++|+..|
T Consensus 358 R~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA--~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 358 RTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA--RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP 435 (564)
T ss_pred HHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch--hhhhhhcceeeccCchhHHHHHHHHHhhhccCC
Confidence 888887777888888888888888 88888888888888888774 5666664 3333 22347999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1736 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1736 ~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
.-..+-...+.++..-|....+..++++++. ..|+.. +.....++........++..-|..|+.
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~--LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVN--LHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccH--HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 555543 888888888888888888888888865
No 188
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=98.75 E-value=4e-08 Score=90.73 Aligned_cols=72 Identities=32% Similarity=0.487 Sum_probs=68.1
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000236 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323 (1810)
Q Consensus 1252 ~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk 1323 (1810)
++|+++.|+|.+++++|+||+++.++.|++|.+++++.+..++.+.|++||.+.|+|++++++++++.+|++
T Consensus 1 ~~G~~v~g~V~~v~~~g~~v~i~~~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 1 EVGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCCEEEEEEEEEEccEEEEEeCCCCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 369999999999999999999999999999999999998888888999999999999999998899999985
No 189
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.74 E-value=2.8e-08 Score=95.38 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=67.3
Q ss_pred CCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCc----ccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000236 634 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD----GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709 (1810)
Q Consensus 634 ~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~----~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~ 709 (1810)
.++|+++.|.|++++++|+||++.+++.|++|.+++++ ....++.+.|++||.+.|+|++++++ +++.||++...
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~~ 82 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSLK 82 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCccc
Confidence 36899999999999999999999999999999999985 44466777899999999999999876 99999998753
No 190
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=98.73 E-value=1.5e-08 Score=127.17 Aligned_cols=84 Identities=32% Similarity=0.605 Sum_probs=79.6
Q ss_pred cccccccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000236 1244 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1323 (1810)
Q Consensus 1244 ~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk 1323 (1810)
....+.+|++|+++.|.|+++.++|+||+||-+.+|+||+|.+|+.|+.+|.+.+++||.|+++|+++|..++||.||||
T Consensus 649 ~v~~i~dLk~Gm~leg~Vrnv~~fgafVdIgv~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Lsmr 728 (780)
T COG2183 649 GVESITDLKPGMILEGTVRNVVDFGAFVDIGVHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALSMR 728 (780)
T ss_pred hhhhHhhccCCCEEEEEEEEeeeccceEEeccccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeEee
Confidence 45556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 000236 1324 TSDS 1327 (1810)
Q Consensus 1324 ~~~~ 1327 (1810)
....
T Consensus 729 ~~~~ 732 (780)
T COG2183 729 LDEE 732 (780)
T ss_pred ccCC
Confidence 8665
No 191
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=98.73 E-value=3.6e-08 Score=94.13 Aligned_cols=75 Identities=20% Similarity=0.370 Sum_probs=66.0
Q ss_pred CCCCCcEEEEEEEEEeec--eEEEEEeCCceeEEEeccccCc---ccccCcccccCCCCEEEEEEEEEecCCCeeEEeec
Q 000236 1340 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSE---DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1414 (1810)
Q Consensus 1340 ~~~~G~~v~G~V~~i~~~--G~fV~l~~~~v~gl~~~sel~~---~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk 1414 (1810)
.+++|+++.|+|+++.++ |+||+|++ +.+||+|+||+++ .++.++.+.+++||.|.|+|++.....+...|+.+
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~-g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~ 82 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGL-GKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTN 82 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCC-CCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEE
Confidence 568999999999999997 99999986 7999999999998 56778889999999999999998877776666654
Q ss_pred c
Q 000236 1415 S 1415 (1810)
Q Consensus 1415 ~ 1415 (1810)
-
T Consensus 83 ~ 83 (88)
T cd04453 83 I 83 (88)
T ss_pred E
Confidence 3
No 192
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.73 E-value=5e-07 Score=112.62 Aligned_cols=225 Identities=15% Similarity=0.107 Sum_probs=175.4
Q ss_pred ccCCCCcHHHHHHHHHc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ccchhh-HHHHHHHHHH
Q 000236 1540 EKDAPRTPDEFERLVRS--------SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN--IREENE-KLNIWVAYFN 1608 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~--------~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~--~~~e~e-~~~lW~~yl~ 1608 (1810)
.++.+.|...|++++.. +|.-...-..++.+|+.++++++|..+|++|+...- +.++.+ -......+..
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45689999999999976 566566666799999999999999999999996321 011111 2355666666
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCC------H---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC--------CCHHH
Q 000236 1609 LENEYGNPPEEAVVKVFQRALQYCDP------K---KVHLALLGLYERTEQNKLADELLYKMIKKFK--------HSCKV 1671 (1810)
Q Consensus 1609 le~~~g~~~~e~a~~vferAl~~~~~------~---~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~--------~~~~~ 1671 (1810)
++...|. .++|+..++||+++... . ..+..++.++...+++++|..+|+++++++. .-..+
T Consensus 292 ly~~~GK--f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~ 369 (508)
T KOG1840|consen 292 LYYKQGK--FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKI 369 (508)
T ss_pred HHhccCC--hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 7777784 49999999999976532 1 6667777889999999999999999998763 33678
Q ss_pred HHHHHHHHHHh-cHHHHHHHHHHHHHhCCCC---Ch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Q 000236 1672 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH---KH---IKFISQTAILEFKNGVADRGRSMFEGILSE-------YPKR 1737 (1810)
Q Consensus 1672 w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~---~~---~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~-------~P~~ 1737 (1810)
+.+++..|..+ ++++|+++|+.|+...... .+ -..+..+|..+.+.+.+.+|-.+|+++... +|+-
T Consensus 370 ~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~ 449 (508)
T KOG1840|consen 370 YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCch
Confidence 99999999999 9999999999999876321 11 245667777778888888888888887643 3455
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1738 TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1738 ~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
...+..++-+|.++|+++.|..+.++++.
T Consensus 450 ~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 66788889999999999999999999985
No 193
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=4e-06 Score=103.97 Aligned_cols=204 Identities=13% Similarity=0.042 Sum_probs=108.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000236 1557 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1635 (1810)
Q Consensus 1557 ~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~- 1635 (1810)
+|++...|..++.++...++.+.|...|.++....+.+.+ ....+..........+ +.+.|.+.++++++..|..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT--ERERAHVEALSAWIAG--DLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcH
Confidence 4666666666666666666666666666665554443211 1122333333444455 3466666666666666654
Q ss_pred HHHH---HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000236 1636 KVHL---ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1711 (1810)
Q Consensus 1636 ~i~~---~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a 1711 (1810)
..|. .+.......+....+...+.......+.....+..++..+..+ ++++|...|+++++..|.+. .++..++
T Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~--~~~~~la 155 (355)
T cd05804 78 LALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA--WAVHAVA 155 (355)
T ss_pred HHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc--HHHHHHH
Confidence 2332 1111122233334444433332223334444444555556656 66666666666666666552 4556666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1712 ILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1712 ~l~~~~g~~e~Ar~lfe~al~~~P~~----~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
.+++..|++++|..+|++++...|.. .+.|..++.++...|++++|+.+|++++.
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 66666666666666666666655432 12455566666666666666666666654
No 194
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=98.72 E-value=2e-08 Score=130.48 Aligned_cols=77 Identities=32% Similarity=0.619 Sum_probs=71.7
Q ss_pred CCCCCCcEEE-EEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecccc
Q 000236 1339 SNLHVGDIVI-GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1417 (1810)
Q Consensus 1339 ~~~~~G~~v~-G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~~ 1417 (1810)
.+.++|+++. |+|++|.+||+||+|.+ +++||||+|+++++++.++.+.|++||.|+|+|+++|. ++||.||+|...
T Consensus 749 ~~~~vG~iy~~g~V~~I~~FGaFVeL~~-g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l~ 826 (891)
T PLN00207 749 MVPTVGDIYRNCEIKSIAPYGAFVEIAP-GREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRALL 826 (891)
T ss_pred cCcCCCcEEECcEEEEEeccEEEEEeCC-CCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEeccc
Confidence 4678999995 69999999999999987 79999999999999999999999999999999999996 899999999853
No 195
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=98.72 E-value=2.4e-08 Score=129.78 Aligned_cols=82 Identities=16% Similarity=0.313 Sum_probs=77.0
Q ss_pred cCCCCCEEE-EEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000236 1250 DLSPNMIVQ-GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1328 (1810)
Q Consensus 1250 ~l~~G~~v~-G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~ 1328 (1810)
+.++|+++. |+|++|.+||+||+|.++++|+||+|+|+|.++.++.+.|++||.|+|+|+++|+ ++||.||+|....+
T Consensus 750 ~~~vG~iy~~g~V~~I~~FGaFVeL~~g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l~~~ 828 (891)
T PLN00207 750 VPTVGDIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRALLPE 828 (891)
T ss_pred CcCCCcEEECcEEEEEeccEEEEEeCCCCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEeccccC
Confidence 467999996 6999999999999999999999999999999999999999999999999999997 89999999999988
Q ss_pred cccc
Q 000236 1329 TASQ 1332 (1810)
Q Consensus 1329 ~~~~ 1332 (1810)
||..
T Consensus 829 Pw~~ 832 (891)
T PLN00207 829 ANSE 832 (891)
T ss_pred chhh
Confidence 8864
No 196
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=98.70 E-value=3.7e-08 Score=113.10 Aligned_cols=76 Identities=33% Similarity=0.627 Sum_probs=71.1
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCC-ceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l~~~-~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~ 1416 (1810)
.++|++|.|+|++|.++|+||.|.+. +++|++|+|++++.++.++.+.|++||.|.|+|+++|+++++|.||+|..
T Consensus 6 P~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~v 82 (262)
T PRK03987 6 PEEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKRV 82 (262)
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEec
Confidence 46899999999999999999999753 79999999999999999999999999999999999999999999999873
No 197
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=2.6e-06 Score=93.35 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Q 000236 1619 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1696 (1810)
Q Consensus 1619 e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk 1696 (1810)
.-|...+++.-...|.. .+-...+.+++..|++++|.++|++.+...|.+..++-+...+...+ +.-+|.+.+...|+
T Consensus 69 ~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 69 DLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 33444444433333332 55555555566666666666666666666665555555555555555 55566666666666
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCchh
Q 000236 1697 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG---DVDLIRGLFERAISLSLPPKK 1773 (1810)
Q Consensus 1697 ~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~g---d~e~ar~lferal~~~~~p~~ 1773 (1810)
.|+.+ ..+|..++.+|+..|+++.|.-+||.++-..|-++-.+..|++++.-.| +++-||.+|++++. +.|++
T Consensus 149 ~F~~D--~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~~~ 224 (289)
T KOG3060|consen 149 KFMND--QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNPKN 224 (289)
T ss_pred HhcCc--HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hChHh
Confidence 66555 2566666666666666666666666666666666666666666655444 34446666666665 44444
Q ss_pred HHHHHHHHH
Q 000236 1774 MKFLFKKYL 1782 (1810)
Q Consensus 1774 ~~~lw~~yl 1782 (1810)
...++-.|+
T Consensus 225 ~ral~GI~l 233 (289)
T KOG3060|consen 225 LRALFGIYL 233 (289)
T ss_pred HHHHHHHHH
Confidence 444443333
No 198
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=98.69 E-value=2.3e-08 Score=125.55 Aligned_cols=79 Identities=33% Similarity=0.653 Sum_probs=75.6
Q ss_pred ccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000236 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416 (1810)
Q Consensus 1337 ~~~~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~ 1416 (1810)
.+.+|++|+++.|+|+++.+||+||.|+ .+.+||+|+|++++.++.++.+.+++||.|+++|+++|..++||.|||+..
T Consensus 652 ~i~dLk~Gm~leg~Vrnv~~fgafVdIg-v~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Lsmr~~ 730 (780)
T COG2183 652 SITDLKPGMILEGTVRNVVDFGAFVDIG-VHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALSMRLD 730 (780)
T ss_pred hHhhccCCCEEEEEEEEeeeccceEEec-cccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeEeecc
Confidence 4679999999999999999999999998 489999999999999999999999999999999999999999999999874
No 199
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=3.1e-08 Score=108.43 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=72.0
Q ss_pred CCCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 635 HPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 635 ~~G~~~~G~V~~i~~~G~fV~f~--~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
..|+.+.|+|.+|.+||+||.+. +|+.||+|+||++...+.++.+++++||.|.|+|+++|+.++-+-||||.-..
T Consensus 10 eeGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkrV~~ 87 (269)
T COG1093 10 EEGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKRVTE 87 (269)
T ss_pred CCCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhhCCH
Confidence 37999999999999999999986 79999999999999999999999999999999999999999999999998754
No 200
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=98.68 E-value=4e-08 Score=125.10 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=66.1
Q ss_pred cCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccC----cccccCcccCcCCCCEEEEEEEEeeCCCCeEEEe
Q 000236 633 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV----DGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704 (1810)
Q Consensus 633 ~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls----~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lS 704 (1810)
++++|+++.|+|++|++||+||++.+|+.||+|+|+++ +.++.++++.|++||.|+|+|+++|. ++|+.|+
T Consensus 644 ~~~vG~i~~GkV~~I~dfGaFVel~~G~eGLvHISeisdls~~~rv~~~~dv~kvGd~V~VKVl~ID~-~gKI~L~ 718 (719)
T TIGR02696 644 MPEVGERFLGTVVKTTAFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLSVGQKIQVEIADIDD-RGKLSLV 718 (719)
T ss_pred cCCCCCEEEEEEEEEECceEEEEecCCceEEEEhhhccccccccCcCCHHHcCCCCCEEEEEEEEECC-CCCeeec
Confidence 47899999999999999999999999999999999995 47889999999999999999999994 7899886
No 201
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=98.67 E-value=1.2e-07 Score=88.56 Aligned_cols=67 Identities=25% Similarity=0.442 Sum_probs=61.3
Q ss_pred ccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEee
Q 000236 630 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 705 (1810)
Q Consensus 630 ~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSl 705 (1810)
.+++++.|+.+.|.|++++++|+||++.+++.||+|.+++. ..|++||+++++|.++ .+++++.+|+
T Consensus 10 ~~~~~~~G~~~~g~V~~i~~~G~fV~l~~~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 10 TMEDLEVGKLYKGKVNGVAKYGVFVDLNDHVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred chhhCCCCCEEEEEEEeEecceEEEEECCCcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 45678999999999999999999999999999999999863 4599999999999999 8899999885
No 202
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=98.67 E-value=1e-07 Score=89.15 Aligned_cols=67 Identities=30% Similarity=0.585 Sum_probs=60.9
Q ss_pred ccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEee
Q 000236 1337 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413 (1810)
Q Consensus 1337 ~~~~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lsl 1413 (1810)
...++++|+.+.|+|++++++|+||++.+ +.+|++|.|++. +.|+.||.++++|.++ .+++||.+++
T Consensus 10 ~~~~~~~G~~~~g~V~~i~~~G~fV~l~~-~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 10 TMEDLEVGKLYKGKVNGVAKYGVFVDLND-HVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred chhhCCCCCEEEEEEEeEecceEEEEECC-CcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 46689999999999999999999999987 799999999863 4599999999999999 7999999875
No 203
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.
Probab=98.66 E-value=8.3e-08 Score=91.58 Aligned_cols=70 Identities=19% Similarity=0.335 Sum_probs=61.9
Q ss_pred CCCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCccccc-----------CcccCcCCCCEEEEEEEEeeCCCCeEEE
Q 000236 636 PNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRA-----------DLSKTYYVGQSVRSNILDVNSETGRITL 703 (1810)
Q Consensus 636 ~G~~~~G~V~~i~~~G~fV~f~~-gv~Glv~~s~ls~~~~~-----------~~~~~~~~Gq~V~~~V~~vd~~~~rl~l 703 (1810)
+|+++.|+|++++++|+||++.+ ++.||+|.+++++++.. .+...|++||.|+|+|+++|.+++++.+
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 38899999999999999999998 89999999999865321 3457799999999999999999999999
Q ss_pred ee
Q 000236 704 SL 705 (1810)
Q Consensus 704 Sl 705 (1810)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
No 204
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=6.4e-07 Score=94.22 Aligned_cols=117 Identities=10% Similarity=-0.029 Sum_probs=86.2
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCC
Q 000236 1623 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1700 (1810)
Q Consensus 1623 ~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1700 (1810)
+.|++++...|.. .....++..+.+.+++++|...|++++...|.+..+|..++.++... ++++|...|+++++..|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567777777665 56667777777777777777777777777777777777777777777 777777777777777766
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000236 1701 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1741 (1810)
Q Consensus 1701 ~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw 1741 (1810)
. ...|..+|.++...|++++|...|+++++..|++...+
T Consensus 84 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D--PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 5 46777777777777777777777777777777766644
No 205
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=98.66 E-value=8.7e-08 Score=91.51 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=66.0
Q ss_pred cCCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEEcccCCC---cccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000236 1250 DLSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSD---GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324 (1810)
Q Consensus 1250 ~l~~G~~v~G~V~~v~~~--G~fV~l~~~v~g~v~~s~ls~---~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~ 1324 (1810)
.+++|+++.|+|+++.++ |+||+++++.+||+|+++++| .++.++.+.|++||.|.|+|+......+...|+.+-
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~~ 83 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGLGKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTNI 83 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCCCCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEEE
Confidence 467999999999999996 999999999999999999999 567788889999999999999987766666666543
No 206
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.66 E-value=4.1e-07 Score=96.61 Aligned_cols=118 Identities=8% Similarity=-0.046 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1654 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1732 (1810)
Q Consensus 1654 A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~ 1732 (1810)
-..+|+++++..|. .|+.++..+.+. ++++|...|++++...|.+ ..+|..+|.++...|++++|...|++++.
T Consensus 12 ~~~~~~~al~~~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPE---TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS--WRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 35788889887554 477889999888 9999999999999999987 58999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 000236 1733 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1779 (1810)
Q Consensus 1733 ~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~ 1779 (1810)
.+|.+...|...+..+...|+++.|+..|++++. ..|... ..|.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~-~~~~ 130 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADA-SWSE 130 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHHH
Confidence 9999999999999999999999999999999999 777777 4553
No 207
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=98.65 E-value=1.8e-07 Score=103.66 Aligned_cols=104 Identities=20% Similarity=0.388 Sum_probs=82.8
Q ss_pred CcEEEEEE---EEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeC---------Cce
Q 000236 1301 GKLVAGRV---LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN---------TNL 1368 (1810)
Q Consensus 1301 G~~V~~~V---l~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~G~fV~l~~---------~~v 1368 (1810)
+..+.+.+ +++|.++++|.+. ||.. ....+++|++|.|+|+++.++|+||+|.. .++
T Consensus 30 ~~~i~as~~G~~~id~~~~~Isv~-------P~~~----~~~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~ 98 (189)
T PRK09521 30 NGEVYASVVGKVFIDDINRKISVI-------PFKK----TPPLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSK 98 (189)
T ss_pred CCEEEEEeeEEEEEcCCCCEEEEe-------cCcC----CCCCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCc
Confidence 34444444 3557677777763 3322 13467899999999999999999999952 258
Q ss_pred eEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccccc
Q 000236 1369 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1418 (1810)
Q Consensus 1369 ~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~~~ 1418 (1810)
.|++|++++++.+..++.+.|++||.|+|+|++++ +++.||+|...+
T Consensus 99 ~G~l~~s~i~~~~~~~~~~~~~~GD~V~akV~~i~---~~i~LS~k~~~l 145 (189)
T PRK09521 99 LAYIHISQVSDGYVESLTDAFKIGDIVRAKVISYT---DPLQLSTKGKDL 145 (189)
T ss_pred eeeEEhhHcChhhhhhHHhccCCCCEEEEEEEecC---CcEEEEEecCCc
Confidence 89999999999888889999999999999999998 789999987433
No 208
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=98.64 E-value=6.6e-08 Score=111.10 Aligned_cols=76 Identities=26% Similarity=0.359 Sum_probs=71.6
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC--CeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 635 HPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 635 ~~G~~~~G~V~~i~~~G~fV~f~~--gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
++|+.+.|+|+++.++|+||++.+ |+.||+|.|+++++++.++.+.|++||.|.|+|+++|++++++.||+|....
T Consensus 7 ~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~v~~ 84 (262)
T PRK03987 7 EEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKRVNE 84 (262)
T ss_pred CCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEeccc
Confidence 579999999999999999999975 8999999999999999999999999999999999999999999999997654
No 209
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.63 E-value=8.6e-08 Score=87.94 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=57.9
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCccc--ccCcccCcCCCCEEEEEEEEeeCCC
Q 000236 637 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ--RADLSKTYYVGQSVRSNILDVNSET 698 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~--~~~~~~~~~~Gq~V~~~V~~vd~~~ 698 (1810)
|+++.|.|.++.++|+||+++++++|++|.+++++.+ ..+|.+.|++||.|+|+|+++|.++
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~ 64 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLADNVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAK 64 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCCCcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCcc
Confidence 7899999999999999999999999999999999874 7888899999999999999999764
No 210
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.62 E-value=1e-07 Score=87.42 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=58.2
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcc--cCCccccCCCCcEEEEEEEEEeCCC
Q 000236 1254 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLS 1315 (1810)
Q Consensus 1254 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~--~~~~~~~f~~G~~V~~~Vl~vd~~~ 1315 (1810)
|+++.|+|+++.++|+||+++.+++|++|+++++++| ..+|.+.|++||.++|+|+++|.++
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~ 64 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLADNVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAK 64 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCCCcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCcc
Confidence 7899999999999999999999999999999999986 7889899999999999999999644
No 211
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.62 E-value=4.4e-05 Score=89.27 Aligned_cols=253 Identities=15% Similarity=0.120 Sum_probs=176.1
Q ss_pred HhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCC
Q 000236 1538 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1617 (1810)
Q Consensus 1538 ~~~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~ 1617 (1810)
+..+++++|.....+.-...+......+--+...-+.|+.+.|-.+..++-+.-+... +.+-+....+....+ +
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~----l~v~ltrarlll~~~--d 168 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT----LAVELTRARLLLNRR--D 168 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch----HHHHHHHHHHHHhCC--C
Confidence 3345555555544444333334444444445555677888888888888875433222 456667777777777 4
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhc-------------------------------
Q 000236 1618 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKF------------------------------- 1665 (1810)
Q Consensus 1618 ~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~------------------------------- 1665 (1810)
.+.|+.-..+++...|.. .+..-...+|.+.|.+.+...+..++-+..
T Consensus 169 ~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 169 YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 488888888888888875 555555666666666666655555544321
Q ss_pred -----------CCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000236 1666 -----------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE 1733 (1810)
Q Consensus 1666 -----------~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~ 1733 (1810)
+.++.+-..|+..+.+. ..++|.++.+.+++..-.. .+...+.. .+-++++.=....|+.++.
T Consensus 249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~---~L~~~~~~--l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP---RLCRLIPR--LRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh---hHHHHHhh--cCCCCchHHHHHHHHHHHh
Confidence 24566667788888888 8888888888888765332 32222222 2356777778888888999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000236 1734 YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805 (1810)
Q Consensus 1734 ~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v 1805 (1810)
.|.++.+|+.++.++++.+.+.+|...|+.|+. ..|... -|....+...+.|+.+.+.++++.|+-..
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~--~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSAS--DYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChh--hHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998 444333 55666666778999999999999998443
No 212
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.62 E-value=1.3e-07 Score=89.90 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=69.0
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecccc
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1417 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~~ 1417 (1810)
.++|++|.|+|+++.+.|++|.+.. ..+|++|.++++....+++.+.|++||.+.|+|+++|.+ +++.||++...
T Consensus 4 p~~GdiV~G~V~~v~~~~~~V~i~~-~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~~ 78 (82)
T cd04454 4 PDVGDIVIGIVTEVNSRFWKVDILS-RGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADNE 78 (82)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEeCC-CceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCCC
Confidence 3789999999999999999999975 899999999999888888899999999999999999976 89999998743
No 213
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.60 E-value=7.5e-06 Score=92.47 Aligned_cols=218 Identities=12% Similarity=0.070 Sum_probs=179.9
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e 1619 (1810)
......|...|..++..+|++..+.++-+..|+..|....|..-+.|.|+.-| |+ ....++...+.+..| ..+
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp---DF--~~ARiQRg~vllK~G--ele 123 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP---DF--MAARIQRGVVLLKQG--ELE 123 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc---cH--HHHHHHhchhhhhcc--cHH
Confidence 44477788899999999999999999999999999999999999999998766 32 246778888899999 569
Q ss_pred HHHHHHHHHHhcCCCH----HHHHHH------------HHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-
Q 000236 1620 AVVKVFQRALQYCDPK----KVHLAL------------LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1682 (1810)
Q Consensus 1620 ~a~~vferAl~~~~~~----~i~~~l------------~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~- 1682 (1810)
.|.+-|+..++..|+. ..+..+ +.-+..+|++..|.+....++...+-+..++...+.+|...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 9999999999999852 222222 22344578999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------HHH
Q 000236 1683 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ------------EIR 1750 (1810)
Q Consensus 1683 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~------------e~k 1750 (1810)
.+..|..-++.+-+.-..+ ...++..+++++..|+.+.+....+.+|+.+|+...-+-.|-.+ .+.
T Consensus 204 e~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQDN--TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred cHHHHHHHHHHHHhccccc--hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988876555 48999999999999999999999999999999865443333222 224
Q ss_pred cCChHHHHHHHHHHHh
Q 000236 1751 LGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1751 ~gd~e~ar~lferal~ 1766 (1810)
.+++..+..-.+..+.
T Consensus 282 ~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLK 297 (504)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 5777778888888887
No 214
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.59 E-value=4.8e-06 Score=103.76 Aligned_cols=222 Identities=18% Similarity=0.211 Sum_probs=174.3
Q ss_pred CCcHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccc---------------hhhH-------H
Q 000236 1544 PRTPDEFERLVRSSP-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE---------------ENEK-------L 1600 (1810)
Q Consensus 1544 ~~a~~~fer~l~~~P-~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~---------------e~e~-------~ 1600 (1810)
..|.+...++|..+| ++...|.-++..+-..+++..|..+-+-++...+.+. -.+. +
T Consensus 495 ~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 495 TSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKL 574 (799)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHH
Confidence 344555667777754 6899999999999999999999999999998776411 0111 2
Q ss_pred HHHHHHHHHHHHcCC--------------CCHHHHHHHHHHHHhcC-------------C--------C------HHHHH
Q 000236 1601 NIWVAYFNLENEYGN--------------PPEEAVVKVFQRALQYC-------------D--------P------KKVHL 1639 (1810)
Q Consensus 1601 ~lW~~yl~le~~~g~--------------~~~e~a~~vferAl~~~-------------~--------~------~~i~~ 1639 (1810)
.+|-+.-.++...++ .+...|...++++.... | . ..+|.
T Consensus 575 ~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwl 654 (799)
T KOG4162|consen 575 ALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWL 654 (799)
T ss_pred HHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHH
Confidence 445522221111110 01233344444443221 1 1 27899
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000236 1640 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1718 (1810)
Q Consensus 1640 ~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g 1718 (1810)
..+..+...++.++|...+.++-+.++-...+|+..+..+... +..+|.+.|--|+..+|.+ +.....+|.++.+.|
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h--v~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH--VPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999 9999999999999999988 589999999999999
Q ss_pred CH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 000236 1719 VA--DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1767 (1810)
Q Consensus 1719 ~~--e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~ 1767 (1810)
+. ..+|.++..+++.+|.+.++|+..+....+.||.++|-..|..|+++
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 64 55566999999999999999999999999999999999999999984
No 215
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.56 E-value=2.5e-07 Score=87.86 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=68.9
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000236 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709 (1810)
Q Consensus 635 ~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~ 709 (1810)
++|+++.|+|.++.+.|++|++.++..|++|.++++.....++.+.|++||.+.|+|++++.+ +++.||++...
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~~ 78 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILSRGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADNE 78 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCCCceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCCC
Confidence 589999999999999999999999999999999999877788889999999999999999986 99999998643
No 216
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=98.56 E-value=1.2e-07 Score=85.62 Aligned_cols=65 Identities=35% Similarity=0.527 Sum_probs=60.5
Q ss_pred EEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEe
Q 000236 640 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 704 (1810)
Q Consensus 640 ~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lS 704 (1810)
+.|+|.++.++|+||++.+++.||+|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecCCCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 36899999999999999999999999999998877788889999999999999999999999876
No 217
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=8.6e-08 Score=118.52 Aligned_cols=104 Identities=26% Similarity=0.566 Sum_probs=84.3
Q ss_pred EEEeCCCCEEEEEEecCcccccccccc-cccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCccc
Q 000236 1309 LSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1387 (1810)
Q Consensus 1309 l~vd~~~~ri~lSlk~~~~~~~~~~~~-~~~~~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~ 1387 (1810)
+.++ +++.+..+.............+ ....++++|+++.|+|+++.+||+||.|.+ +-+||||+|++++.++.+..+
T Consensus 585 Idie-ddGtv~i~~s~~~~~~~ak~~I~~i~~e~evg~iy~G~V~ri~~fGaFv~l~~-gkdgl~hiS~~~~~rv~kv~d 662 (692)
T COG1185 585 IDIE-DDGTVKIAASDGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVELLP-GKDGLVHISQLAKERVEKVED 662 (692)
T ss_pred EEec-CCCcEEEEecchHHHHHHHHHHHHHHhhcccccEEEEEEEEEeecceEEEecC-CcceeEEehhhhhhhhhcccc
Confidence 3445 5677777665433211111111 124689999999999999999999999997 899999999999999999999
Q ss_pred ccCCCCEEEEEEEEEecCCCeeEEeecc
Q 000236 1388 IYRAGEKVKVKILKVDKEKRRISLGMKS 1415 (1810)
Q Consensus 1388 ~~~~G~~V~~~I~~id~~~~ri~lslk~ 1415 (1810)
.+++||.|.++++.+| +++|+.||+|.
T Consensus 663 vlk~Gd~v~Vkv~~iD-~~Gri~ls~~~ 689 (692)
T COG1185 663 VLKEGDEVKVKVIEID-KQGRIRLSIKA 689 (692)
T ss_pred eeecCceEEEEEeeec-ccCCccceehh
Confidence 9999999999999999 68999999986
No 218
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.55 E-value=1.3e-06 Score=91.77 Aligned_cols=115 Identities=10% Similarity=-0.015 Sum_probs=106.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000236 1656 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1734 (1810)
Q Consensus 1656 ~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~ 1734 (1810)
+.|++++...|.+....+.++..+.+. ++++|.+.|++++...|.+ ..+|..+|.+++..|++++|..+|++++...
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468889998888889999999999999 9999999999999999886 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000236 1735 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1774 (1810)
Q Consensus 1735 P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~ 1774 (1810)
|.+.+.|..++.++...|++++|...|++++. ..|...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 119 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENP 119 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccc
Confidence 99999999999999999999999999999999 555544
No 219
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=8e-06 Score=107.48 Aligned_cols=207 Identities=12% Similarity=0.034 Sum_probs=135.6
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--
Q 000236 1556 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-- 1633 (1810)
Q Consensus 1556 ~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~-- 1633 (1810)
.+|.+..+|..++..+...+++++|.++.+.+++..|.+- .+|...+.++.+.+.+ +.+.-+ +++...+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i-----~~yy~~G~l~~q~~~~--~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI-----SALYISGILSLSRRPL--NDSNLL--NLIDSFSQN 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce-----ehHHHHHHHHHhhcch--hhhhhh--hhhhhcccc
Confidence 4689999999999999999999999999999998777433 3555544455555532 333322 3433332
Q ss_pred ------------------CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 000236 1634 ------------------PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRAL 1695 (1810)
Q Consensus 1634 ------------------~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ral 1695 (1810)
....+..+|.+|.+.|++++|.++|+++++..|+++.+..+||.+|...+.++|++++.+|+
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV 176 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAI 176 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23577788888889999999999999999999999999999998887778899999999988
Q ss_pred HhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 000236 1696 LSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYP--KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1769 (1810)
Q Consensus 1696 k~~p~~~~----~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P--~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~ 1769 (1810)
+.+-..++ ..+|..+..... -+.+.=..+.++++.+.- .-.++|...-..+....+++++..+|.++|. .
T Consensus 177 ~~~i~~kq~~~~~e~W~k~~~~~~--~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~ 252 (906)
T PRK14720 177 YRFIKKKQYVGIEEIWSKLVHYNS--DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--H 252 (906)
T ss_pred HHHHhhhcchHHHHHHHHHHhcCc--ccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--c
Confidence 76422111 123333333211 122222233333333211 1233444444445566778888888888887 5
Q ss_pred CchhHH
Q 000236 1770 PPKKMK 1775 (1810)
Q Consensus 1770 ~p~~~~ 1775 (1810)
.|++.+
T Consensus 253 ~~~n~~ 258 (906)
T PRK14720 253 DNKNNK 258 (906)
T ss_pred CCcchh
Confidence 555543
No 220
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.54 E-value=2.2e-05 Score=96.16 Aligned_cols=132 Identities=9% Similarity=0.089 Sum_probs=102.5
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000236 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1621 (1810)
Q Consensus 1542 ~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a 1621 (1810)
+..+|+..|..+|...|+|..+|..++-.+.+.++++-....-.+.++..|.+. ..|+.++-.+...|++ ..|
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r-----a~w~~~Avs~~L~g~y--~~A 162 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR-----ASWIGFAVAQHLLGEY--KMA 162 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHH--HHH
Confidence 366889999999999999999999999999999999999999999997776432 5799888888777744 666
Q ss_pred HHHHHHHHhcC---CCH----------------------------------------HHHHHHHHHHHHhCChHHHHHHH
Q 000236 1622 VKVFQRALQYC---DPK----------------------------------------KVHLALLGLYERTEQNKLADELL 1658 (1810)
Q Consensus 1622 ~~vferAl~~~---~~~----------------------------------------~i~~~l~~~~~~~g~~~~A~~~~ 1658 (1810)
..+.+...+.+ ++. ..-...+.++.+.+++++|..+|
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 66666655554 221 11112223678889999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH
Q 000236 1659 YKMIKKFKHSCKVWLRRVQRLL 1680 (1810)
Q Consensus 1659 e~~lk~~~~~~~~w~~~a~~~~ 1680 (1810)
.+++.++|++...+..+-..+.
T Consensus 243 ~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 243 RRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHHhhCchhHHHHHHHHHHHH
Confidence 9999999999888777776664
No 221
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=98.51 E-value=2e-07 Score=122.42 Aligned_cols=75 Identities=36% Similarity=0.702 Sum_probs=71.3
Q ss_pred CCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecc
Q 000236 1339 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415 (1810)
Q Consensus 1339 ~~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~ 1415 (1810)
.++++|+++.|+|+++.+||+||+|.+ +.+||+|+|++++.++.++.+.|++||.|+++|+++|.+ +||.||+|.
T Consensus 617 ~~~~vG~v~~G~V~~I~~fGafVei~~-~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~ 691 (693)
T PRK11824 617 AEPEVGEIYEGKVVRIVDFGAFVEILP-GKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKA 691 (693)
T ss_pred ccCcCCeEEEEEEEEEECCeEEEEECC-CCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEe
Confidence 468999999999999999999999986 899999999999999999999999999999999999976 999999986
No 222
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=98.49 E-value=2.5e-07 Score=121.67 Aligned_cols=76 Identities=25% Similarity=0.418 Sum_probs=71.9
Q ss_pred ccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000236 632 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708 (1810)
Q Consensus 632 ~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~ 708 (1810)
.+.++|+++.|+|+++++||+||++.++..||+|+|+++++++.++.+.|++||.|+|+|+++|++ +++.||+|..
T Consensus 617 ~~~~vG~v~~G~V~~I~~fGafVei~~~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~~ 692 (693)
T PRK11824 617 AEPEVGEIYEGKVVRIVDFGAFVEILPGKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKAV 692 (693)
T ss_pred ccCcCCeEEEEEEEEEECCeEEEEECCCCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEec
Confidence 357899999999999999999999999999999999999999999999999999999999999987 9999999853
No 223
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.49 E-value=5.4e-05 Score=96.00 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000236 1708 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1787 (1810)
Q Consensus 1708 ~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~ 1787 (1810)
..+|+.+...|++++|..+.++++...|+.+++++.-+.++.+.|++..|-..++.|-. +...+. .+=.+.+.+.-+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DR-yiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADR-YINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhH-HHHHHHHHHHHH
Confidence 33366666777777777777777777777777777777777777777777777777776 332222 455555556666
Q ss_pred cCCHHHHHHHH
Q 000236 1788 VGEEERIEYVK 1798 (1810)
Q Consensus 1788 ~G~~~~a~~v~ 1798 (1810)
.|..++|..++
T Consensus 275 a~~~e~A~~~~ 285 (517)
T PF12569_consen 275 AGRIEEAEKTA 285 (517)
T ss_pred CCCHHHHHHHH
Confidence 66666665544
No 224
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=98.47 E-value=3.7e-07 Score=82.33 Aligned_cols=65 Identities=34% Similarity=0.581 Sum_probs=61.0
Q ss_pred EEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000236 1257 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1321 (1810)
Q Consensus 1257 v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lS 1321 (1810)
+.|+|+++.++|+||+++.+.+|++|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecCCCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 47999999999999999999999999999999888888899999999999999999989998875
No 225
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=7.3e-06 Score=107.84 Aligned_cols=199 Identities=11% Similarity=0.106 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH-------
Q 000236 1598 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC------- 1669 (1810)
Q Consensus 1598 e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~------- 1669 (1810)
.....|.++++.+...+ +.++|.++.+.+++.+|.. ..|+.++.++.+.+++++|..+ +++..++...
T Consensus 29 ~n~~a~~~Li~~~~~~~--~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSEN--LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 34679999999998999 5599999999999999987 8888888899998888887666 6666665544
Q ss_pred ------------HHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000236 1670 ------------KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1736 (1810)
Q Consensus 1670 ------------~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~ 1736 (1810)
.+.+.+|.+|-++ +.++|.+.|+++|+..|.+ +.+..+||.++... ++++|++++.+|+..+=+
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN--PEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 6777778888777 8888888888888888766 47788888877777 888888888888765432
Q ss_pred ------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000236 1737 ------RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806 (1810)
Q Consensus 1737 ------~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~ 1806 (1810)
-.++|..|+..... +++.-..+.++++.. .-..++-.+|.-.-....+..+++++..++.++++|=.
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~--d~d~f~~i~~ki~~~-~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSD--DFDFFLRIERKVLGH-REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred hhcchHHHHHHHHHHhcCcc--cchHHHHHHHHHHhh-hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 13467777655432 233333333343331 11122223333333334445567777777777776643
No 226
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=8.4e-06 Score=97.55 Aligned_cols=130 Identities=14% Similarity=0.037 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000236 1635 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1713 (1810)
Q Consensus 1635 ~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l 1713 (1810)
...|+-.+.-+.+.+++++|+..+..+++..|+++-.|...++++++. +..+|.+.|++|+..+|.. .-+|+.||+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~a 383 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQA 383 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHH
Confidence 378888888889999999999999999999999999999999999999 9999999999999999987 4899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1714 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1714 ~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
+++.|++.+|..++.+.+..+|.++..|..+++.+..+|+..++...+-....
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877766665
No 227
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.42 E-value=8.4e-05 Score=87.03 Aligned_cols=225 Identities=15% Similarity=0.175 Sum_probs=172.8
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCc-cchhhHHH--HHHH
Q 000236 1529 QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEKLN--IWVA 1605 (1810)
Q Consensus 1529 ~~~~~~e~~~~~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~-~~e~e~~~--lW~~ 1605 (1810)
-+++..+..+...+.|.|+...++++...|.+...-.-...+|...|++.....+....-+.--. .+|..++. .|..
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 36777777777788999999999999999999999999999999999999999998877664333 23444443 3333
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000236 1606 YFNLENEYGNPPEEAVVKVFQRALQYCDP-----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1680 (1810)
Q Consensus 1606 yl~le~~~g~~~~e~a~~vferAl~~~~~-----~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~ 1680 (1810)
.+. +..+ .+-+.. +....+..|. -++-..++.-+.+.|.+++|.++.+.++++.-+.. +..++-
T Consensus 235 lL~---q~~~--~~~~~g-L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~ 303 (400)
T COG3071 235 LLQ---QARD--DNGSEG-LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIP 303 (400)
T ss_pred HHH---HHhc--cccchH-HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHh
Confidence 333 2221 111111 3333333443 27888999999999999999999999999764443 223332
Q ss_pred Hh---cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 000236 1681 KQ---QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1757 (1810)
Q Consensus 1681 ~~---~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~a 1757 (1810)
+. ++..-.+..++.++..|... .+++.+++++++++.+.+|.+.|+.+++.-|. ..-|...++.+.+.|+.+.|
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHH
Confidence 22 77888888999999999884 89999999999999999999999999887775 56688889999999999999
Q ss_pred HHHHHHHHhc
Q 000236 1758 RGLFERAISL 1767 (1810)
Q Consensus 1758 r~lferal~~ 1767 (1810)
.++++.++..
T Consensus 381 ~~~r~e~L~~ 390 (400)
T COG3071 381 EQVRREALLL 390 (400)
T ss_pred HHHHHHHHHH
Confidence 9999999973
No 228
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=98.42 E-value=1.7e-06 Score=95.92 Aligned_cols=95 Identities=18% Similarity=0.316 Sum_probs=78.0
Q ss_pred EEEeecCCCeEEEeccchhcchhccCCCccccCCCCCEEEEEEEEEecCeEEEEEC----------CCeEEEeeCCccCc
Q 000236 602 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL----------GRLTGFAPRSKAVD 671 (1810)
Q Consensus 602 vl~id~~~~~v~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~----------~gv~Glv~~s~ls~ 671 (1810)
.+.+|.+++++.| +||... ....++|+++.|.|++++++|+||++. .++.||+|.+++++
T Consensus 40 ~~~id~~~~~Isv-------~P~~~~---~~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~G~l~~s~i~~ 109 (189)
T PRK09521 40 KVFIDDINRKISV-------IPFKKT---PPLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKLAYIHISQVSD 109 (189)
T ss_pred EEEEcCCCCEEEE-------ecCcCC---CCCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCceeeEEhhHcCh
Confidence 4556777766666 233321 234579999999999999999999984 37899999999999
Q ss_pred ccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000236 672 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709 (1810)
Q Consensus 672 ~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~ 709 (1810)
....++.+.|++||.|.|+|++++ +++.||++...
T Consensus 110 ~~~~~~~~~~~~GD~V~akV~~i~---~~i~LS~k~~~ 144 (189)
T PRK09521 110 GYVESLTDAFKIGDIVRAKVISYT---DPLQLSTKGKD 144 (189)
T ss_pred hhhhhHHhccCCCCEEEEEEEecC---CcEEEEEecCC
Confidence 888888999999999999999998 79999998654
No 229
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.41 E-value=7.1e-07 Score=79.42 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=56.1
Q ss_pred ccEEEEEEEEeecceeEEEecccCceeEEEeeeeccCc---------cccCCCeE-EEEEEEeecccceEEEeeh
Q 000236 750 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA---------TVESGSVI-QAAILDVAKAERLVDLSLK 814 (1810)
Q Consensus 750 G~~v~~~V~~~~~~g~~v~l~~~~~v~g~i~~~~ls~~---------~~~~G~~v-~~~vl~~~~~~~~v~ls~k 814 (1810)
|++|+|+|.++++++++|++.+. ++.|++|..||||+ ++++||++ .++|+ +...+.+.||.|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l~~~-~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL--~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAILPE-EIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCL--SNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEecCC-CcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEE--eccccEEEEecC
Confidence 78999999999999999999986 89999999999993 79999999 66677 888999988865
No 230
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core.
Probab=98.40 E-value=9.6e-07 Score=87.07 Aligned_cols=73 Identities=25% Similarity=0.539 Sum_probs=63.1
Q ss_pred cEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccC-----------cccccCCCCEEEEEEEEEecCC-----Ce
Q 000236 1345 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-----------IETIYRAGEKVKVKILKVDKEK-----RR 1408 (1810)
Q Consensus 1345 ~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~-----------~~~~~~~G~~V~~~I~~id~~~-----~r 1408 (1810)
+++.|+|+++.++|+||+|. +++|++|++++++++... ....|++||.|+++|.++|.+. ++
T Consensus 1 ~vv~g~V~~i~~~GifV~l~--~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~ 78 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG--PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESK 78 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc--CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCce
Confidence 47899999999999999997 499999999998876542 3578999999999999999764 58
Q ss_pred eEEeecccccC
Q 000236 1409 ISLGMKSSYFK 1419 (1810)
Q Consensus 1409 i~lslk~~~~~ 1419 (1810)
|.||+|..+++
T Consensus 79 i~ls~k~~~~g 89 (99)
T cd04460 79 IGLTMRQPGLG 89 (99)
T ss_pred EEEEEecCCCC
Confidence 99999987663
No 231
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.37 E-value=1.9e-05 Score=100.19 Aligned_cols=193 Identities=15% Similarity=0.110 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000236 1601 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1679 (1810)
Q Consensus 1601 ~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~ 1679 (1810)
..|.++..+- . +.+.|...|=||++..+.. ..|..++.+|...-+...|...|.++....+.+...|-..++.+
T Consensus 462 ~~w~a~~~~r---K--~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adty 536 (1238)
T KOG1127|consen 462 EFWVALGCMR---K--NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTY 536 (1238)
T ss_pred HHHHHHHHhh---h--hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHh
Confidence 3455555432 2 3478899999999999986 99999999999999999999999999999999999999999999
Q ss_pred HHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 000236 1680 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1758 (1810)
Q Consensus 1680 ~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar 1758 (1810)
.+. .++.|..+.-++-+..|.......|...+-+|.+.++...|...|+.+++.+|++...|..++..|-..|.+..|.
T Consensus 537 ae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 537 AEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred hccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHH
Confidence 999 9999999988888887776656788888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHH
Q 000236 1759 GLFERAISLSLPPKKMKFLFKKYL--EYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1759 ~lferal~~~~~p~~~~~lw~~yl--~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
..|.+|.. +.|.. .+.+|- .+|...|.++++.+.++..+.
T Consensus 617 KvF~kAs~--LrP~s---~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 617 KVFTKASL--LRPLS---KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HhhhhhHh--cCcHh---HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999998 66653 333433 467888998888777666543
No 232
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=2.6e-05 Score=86.89 Aligned_cols=159 Identities=10% Similarity=0.010 Sum_probs=119.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 000236 1604 VAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1682 (1810)
Q Consensus 1604 ~~yl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~ 1682 (1810)
..+...+...|. -+....+...+.-.++. ..+...++....+.|++.+|...+.++....|++.++|..++-.|.+.
T Consensus 70 ~~~a~a~~~~G~--a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGD--ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhccc--ccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 444555555552 24444444444333333 356666888888888888888888888888888888888888888888
Q ss_pred -cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 000236 1683 -QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1761 (1810)
Q Consensus 1683 -~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lf 1761 (1810)
+.+.|+..|.+|++..|... .++.+++-.++-.||++.|++++.++...-+.+..+-..++......|+++.|+.+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888888888888774 788888888888888888888888887777778888888888888888888888876
Q ss_pred HHHHh
Q 000236 1762 ERAIS 1766 (1810)
Q Consensus 1762 eral~ 1766 (1810)
..-+.
T Consensus 226 ~~e~~ 230 (257)
T COG5010 226 VQELL 230 (257)
T ss_pred ccccc
Confidence 66443
No 233
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.5e-05 Score=92.79 Aligned_cols=256 Identities=13% Similarity=0.077 Sum_probs=183.2
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcC-------
Q 000236 1542 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG------- 1614 (1810)
Q Consensus 1542 ~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g------- 1614 (1810)
...++...|..++...|+++..|..-++.++..+++++|.--++..++.-+... +. ......++...+
T Consensus 64 ~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~---k~--~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS---KG--QLREGQCHLALSDLIEAEE 138 (486)
T ss_pred hHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc---cc--ccchhhhhhhhHHHHHHHH
Confidence 366778889999999999999999999999999999999999988886544321 11 111112222222
Q ss_pred ---CCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-c
Q 000236 1615 ---NPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1683 (1810)
Q Consensus 1615 ---~~~~e~a~~vferAl~~~~~~-------~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~ 1683 (1810)
+++.-++...|.+.-...+.. ..-+.-+..+...+++.+|...--..++..+.+....+..+.++.-. +
T Consensus 139 ~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~ 218 (486)
T KOG0550|consen 139 KLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN 218 (486)
T ss_pred HhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc
Confidence 111112222222222222221 33334455777889999999999999998888888888888888888 9
Q ss_pred HHHHHHHHHHHHHhCCCCCh----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH
Q 000236 1684 QEGVQAVVQRALLSLPRHKH----------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEI 1749 (1810)
Q Consensus 1684 ~~~A~~ll~ralk~~p~~~~----------~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~----lw~~ya~~e~ 1749 (1810)
.+.|...|+++|...|.+.. ...|..-+.-.+++|.+..|.++|..+|..+|.+.. ++..-+....
T Consensus 219 ~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 219 ADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred hHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 99999999999999988642 467888888889999999999999999999998643 5666677778
Q ss_pred HcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000236 1750 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805 (1810)
Q Consensus 1750 k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v 1805 (1810)
++|+...|..-.+.|+. +.+.-.+ -+.+...-..-.++++++.+-|++|++.-
T Consensus 299 rLgrl~eaisdc~~Al~--iD~syik-all~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALK--IDSSYIK-ALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred ccCCchhhhhhhhhhhh--cCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998 6654332 12222222333566888888888887653
No 234
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.35 E-value=3.3e-05 Score=86.08 Aligned_cols=175 Identities=11% Similarity=0.059 Sum_probs=127.9
Q ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000236 1546 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1625 (1810)
Q Consensus 1546 a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vf 1625 (1810)
+...+-+....+|.+..+ ..+...+...|+-+.+..+...++...+. + ..+-.+|+....+.|++ ..|...|
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~--d---~~ll~~~gk~~~~~g~~--~~A~~~~ 123 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK--D---RELLAAQGKNQIRNGNF--GEAVSVL 123 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc--c---HHHHHHHHHHHHHhcch--HHHHHHH
Confidence 444445555677887777 77777777777777777776665533332 1 12344477777777744 8888888
Q ss_pred HHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCCh
Q 000236 1626 QRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH 1703 (1810)
Q Consensus 1626 erAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~ 1703 (1810)
+||....|.+ ..|..++-.|.+.|++++|+..|.++++.+++.+.+..+++-+++-+ +++.|+.++.++-..-+.+
T Consensus 124 rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad-- 201 (257)
T COG5010 124 RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD-- 201 (257)
T ss_pred HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc--
Confidence 8888888776 88888888888888888888888888888888888888888877777 8888888888876655444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000236 1704 IKFISQTAILEFKNGVADRGRSMFEGI 1730 (1810)
Q Consensus 1704 ~~~~~~~a~l~~~~g~~e~Ar~lfe~a 1730 (1810)
..+.-+++.+.-..|++++|+.+-..-
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 367777777777888888887776554
No 235
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=98.30 E-value=1e-06 Score=115.52 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=66.2
Q ss_pred ccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEE
Q 000236 632 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 703 (1810)
Q Consensus 632 ~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~l 703 (1810)
...++|+++.|+|+++++||+||++++++.||+|+|+++++++.++.+.|++||.|+|+|+++|. ++|+.|
T Consensus 614 ~~~~~G~i~~G~V~~I~~~GafVei~~g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 614 AEPEVGKIYEGKVVRIMDFGAFVEILPGKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred cccccCcEEEEEEEEEeCCEEEEEECCCcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 34689999999999999999999999999999999999999999999999999999999999997 677754
No 236
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.30 E-value=0.00017 Score=91.63 Aligned_cols=255 Identities=12% Similarity=0.080 Sum_probs=168.7
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCC
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM-----ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1615 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~-----~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~ 1615 (1810)
++.++|...|..+|..||+|...+..|..+.... ...+...++|+......|... |...+-+....|.
T Consensus 52 g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~-------~~~rl~L~~~~g~ 124 (517)
T PF12569_consen 52 GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD-------APRRLPLDFLEGD 124 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcccc-------chhHhhcccCCHH
Confidence 5678899999999999999998888888887322 357777888888877766433 3433333222220
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc---------------CCCHHHHH--HHHHH
Q 000236 1616 PPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF---------------KHSCKVWL--RRVQR 1678 (1810)
Q Consensus 1616 ~~~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~---------------~~~~~~w~--~~a~~ 1678 (1810)
.=.+.+.....+.++.. -..++..+-.+|....+..-..++++...... +.+..+|. .+|++
T Consensus 125 ~F~~~~~~yl~~~l~Kg-vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh 203 (517)
T PF12569_consen 125 EFKERLDEYLRPQLRKG-VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH 203 (517)
T ss_pred HHHHHHHHHHHHHHhcC-CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH
Confidence 00122333333333221 11455555556655555555555555544321 22344674 45888
Q ss_pred HHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 000236 1679 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1757 (1810)
Q Consensus 1679 ~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~a 1757 (1810)
|-.. ++++|.++.++|+...|.. +.+++.-|.++...|++.+|-..++.|-..++.+--+=...+..+.+.|+++.|
T Consensus 204 yd~~g~~~~Al~~Id~aI~htPt~--~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A 281 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIEHTPTL--VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEA 281 (517)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHH
Confidence 8888 9999999999999998887 689999999999999999999999999999998888888888899999999999
Q ss_pred HHHHHHHHhcCCCc-hh---HHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHH
Q 000236 1758 RGLFERAISLSLPP-KK---MKFLFKKYL--EYEKSVGEEERIEYVKQKAMEYV 1805 (1810)
Q Consensus 1758 r~lferal~~~~~p-~~---~~~lw~~yl--~~E~~~G~~~~a~~v~~rAl~~v 1805 (1810)
..++..-+..+..| .+ |..+|-..- .-..+.|+...|..-|....+..
T Consensus 282 ~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 282 EKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 98888777633111 11 222332221 22334677777766666655443
No 237
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=5.2e-05 Score=90.95 Aligned_cols=131 Identities=9% Similarity=0.062 Sum_probs=116.7
Q ss_pred CCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000236 1666 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1744 (1810)
Q Consensus 1666 ~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~y 1744 (1810)
+.....|+-.+.-+++. ++++|+..++..++..|++ +-+|...++++++.++.++|.+.|++++..+|.+.-+|..|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N--~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN--PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 57888999999888888 9999999999999999988 47888888999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000236 1745 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1801 (1810)
Q Consensus 1745 a~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rA 1801 (1810)
++++++.|++.+|..++.+.+. ..|.++ ..|....+-+.+.|+..++...+..+
T Consensus 381 a~all~~g~~~eai~~L~~~~~--~~p~dp-~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLF--NDPEDP-NGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCCCc-hHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 9999999999999999999998 566777 69999988888888877766554433
No 238
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.29 E-value=5.2e-05 Score=79.22 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Q 000236 1619 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK-KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1696 (1810)
Q Consensus 1619 e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk-~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk 1696 (1810)
+....-..+++...|...-.+.+++.+...|++.+|...|++++. .|.+++.+.+.+++..+.. ++..|...++...+
T Consensus 73 ~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 73 ERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 433333444455556667788899999999999999999999987 7889999999999999999 99999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHh
Q 000236 1697 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL----IRGLFERAIS 1766 (1810)
Q Consensus 1697 ~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~----ar~lferal~ 1766 (1810)
..|....+.-.+.||..+...|.++.|++.|+.++..+|. +.....|+.++.++|..+. ++.+++++..
T Consensus 153 ~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 153 YNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred cCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 9998877889999999999999999999999999999996 6788899999999996554 5567777766
No 239
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=98.29 E-value=1e-06 Score=115.59 Aligned_cols=71 Identities=37% Similarity=0.714 Sum_probs=66.2
Q ss_pred CCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEE
Q 000236 1339 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1411 (1810)
Q Consensus 1339 ~~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~l 1411 (1810)
..+++|++|.|+|+++.+||+||+|.+ +++||+|+|++++.++.++.+.|++||.|+++|+++|. ++||+|
T Consensus 614 ~~~~~G~i~~G~V~~I~~~GafVei~~-g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 614 AEPEVGKIYEGKVVRIMDFGAFVEILP-GKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred cccccCcEEEEEEEEEeCCEEEEEECC-CcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 467899999999999999999999986 79999999999999999999999999999999999996 788764
No 240
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=98.27 E-value=1.9e-05 Score=94.17 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 000236 1652 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRSMFEG 1729 (1810)
Q Consensus 1652 ~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~-~e~Ar~lfe~ 1729 (1810)
.....+|+++..+|+.+.++|..|+.|..+. .+.+...+|..||...|.+ +.+|+..|.+++..+. .+.||++|.+
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~--~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN--PDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--chhHHhhhhhHHhhccchHHHHHHHHH
Confidence 3556788999999999999999999998888 7999999999999999988 4899999999998774 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcC
Q 000236 1730 ILSEYPKRTDLWSIYLDQEIRLG 1752 (1810)
Q Consensus 1730 al~~~P~~~~lw~~ya~~e~k~g 1752 (1810)
+|+.+|+++.+|..|.+++...-
T Consensus 166 gLR~npdsp~Lw~eyfrmEL~~~ 188 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFRMELMYA 188 (568)
T ss_pred HhhcCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999997653
No 241
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.26 E-value=2.8e-05 Score=94.13 Aligned_cols=164 Identities=15% Similarity=0.188 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcC
Q 000236 1547 PDEFERLVRSSPNSSFVWIKYMAFMLSMAD------------VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1614 (1810)
Q Consensus 1547 ~~~fer~l~~~P~~~~~W~~y~~~~~~~~~------------~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g 1614 (1810)
...|++.+..+|++..+|++|+.+....-. .+....+|+|||+..|.++ .+|+.||......-
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~-----~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE-----RLLLGYLEEGEKVW 79 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhC
Confidence 346788999999999999999999765432 2344455555555544222 35555555555544
Q ss_pred CCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH---hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcHHHHHHH
Q 000236 1615 NPPEEAVVKVFQRALQYCDPK-KVHLALLGLYER---TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAV 1690 (1810)
Q Consensus 1615 ~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~---~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~~~~~A~~l 1690 (1810)
+.++..+-+++++..+|.. .+|..|+++... ...+...+.+|.+++........-- .........
T Consensus 80 --~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~---------~~~~~~~~~ 148 (321)
T PF08424_consen 80 --DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR---------MTSHPDLPE 148 (321)
T ss_pred --CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc---------cccccchhh
Confidence 3455555555555555432 555555554433 1234444444444443321000000 000000000
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000236 1691 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1734 (1810)
Q Consensus 1691 l~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~ 1734 (1810)
++. ..+.++.+++.|+.+.|-.|+|..+++-++..+
T Consensus 149 ~e~--------~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 149 LEE--------FMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHH--------HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 000 124788899999999999999999999998764
No 242
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1.3e-06 Score=108.44 Aligned_cols=105 Identities=18% Similarity=0.362 Sum_probs=83.3
Q ss_pred EEEeecCCCeEEEeccchh-cc-hhccCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCccc
Q 000236 602 LLVLDNESSNLLLSAKYSL-IN-SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 679 (1810)
Q Consensus 602 vl~id~~~~~v~ls~K~~l-~~-~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~ 679 (1810)
-+.++ +.+++.++....- .+ +...+..-..++.+|+++.|+|++|.+||+||+|.+|=.||+|+|++++.++...++
T Consensus 584 ~Idie-ddGtv~i~~s~~~~~~~ak~~I~~i~~e~evg~iy~G~V~ri~~fGaFv~l~~gkdgl~hiS~~~~~rv~kv~d 662 (692)
T COG1185 584 KIDIE-DDGTVKIAASDGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVELLPGKDGLVHISQLAKERVEKVED 662 (692)
T ss_pred EEEec-CCCcEEEEecchHHHHHHHHHHHHHHhhcccccEEEEEEEEEeecceEEEecCCcceeEEehhhhhhhhhcccc
Confidence 34455 5666666543321 11 111222223568899999999999999999999999999999999999999999999
Q ss_pred CcCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000236 680 TYYVGQSVRSNILDVNSETGRITLSLKQS 708 (1810)
Q Consensus 680 ~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~ 708 (1810)
.+++||.|.|+|+.+| ..+|+.||++..
T Consensus 663 vlk~Gd~v~Vkv~~iD-~~Gri~ls~~~~ 690 (692)
T COG1185 663 VLKEGDEVKVKVIEID-KQGRIRLSIKAV 690 (692)
T ss_pred eeecCceEEEEEeeec-ccCCccceehhc
Confidence 9999999999999999 479999998753
No 243
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.23 E-value=1.7e-05 Score=97.59 Aligned_cols=108 Identities=14% Similarity=0.021 Sum_probs=92.3
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000236 1639 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717 (1810)
Q Consensus 1639 ~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~ 1717 (1810)
...+..+...+++++|.+.|++++...|.+..+|+.++.++... ++++|...|++|+...|.+ ..+|..+|.+++.+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHh
Confidence 34456667789999999999999999999999999999999999 9999999999999999876 47899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000236 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1748 (1810)
Q Consensus 1718 g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e 1748 (1810)
|++++|...|++++..+|++..++.....+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999887655544443
No 244
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=98.22 E-value=7.3e-06 Score=93.72 Aligned_cols=78 Identities=26% Similarity=0.372 Sum_probs=69.6
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccc----cCcccccCCCCEEEEEEEEEecCCCeeEEeecc
Q 000236 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----DNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415 (1810)
Q Consensus 1340 ~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~----~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~ 1415 (1810)
..++||+|.|+|+++.++|+||.|.. ...|++|++++++.++ .++.+.|++||.|+|+|+++++ .+++.||+|.
T Consensus 60 ~P~vGDiViG~V~~i~~~~~~vdI~~-~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~-~~~~~LS~k~ 137 (235)
T PRK04163 60 IPKVGDLVIGKVTDVTFSGWEVDINS-PYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDR-TRDVVLTLKG 137 (235)
T ss_pred cCCCCCEEEEEEEEEeCceEEEEeCC-CceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECC-CCcEEEEEcC
Confidence 35899999999999999999999985 7999999999999876 6788999999999999999985 4569999998
Q ss_pred cccC
Q 000236 1416 SYFK 1419 (1810)
Q Consensus 1416 ~~~~ 1419 (1810)
..++
T Consensus 138 ~~lG 141 (235)
T PRK04163 138 KGLG 141 (235)
T ss_pred CCCC
Confidence 6653
No 245
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.21 E-value=0.00028 Score=86.83 Aligned_cols=221 Identities=15% Similarity=0.111 Sum_probs=157.1
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000236 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1622 (1810)
Q Consensus 1543 ~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~ 1622 (1810)
-.+|-......++.++.+...|.-|+-++....++++|...|..|+..-+. .+.+|..+.-+..+++ +.+...
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-----N~qilrDlslLQ~QmR--d~~~~~ 129 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-----NLQILRDLSLLQIQMR--DYEGYL 129 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHH--hhhhHH
Confidence 444555556677888999999999999999999999999999999965442 2478998888888888 458888
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhC
Q 000236 1623 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1698 (1810)
Q Consensus 1623 ~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~--~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~ 1698 (1810)
..-.+.++..|.. .-|+.++-.+.-.|.+..|..+.+...+.. +.+...+-..-.++.+. ...++-. ++.|++.+
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~-~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS-LQKALEHL 208 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHH
Confidence 8888999999886 789999998888999999998888887755 23444444333333333 2222211 44444433
Q ss_pred CCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCch
Q 000236 1699 PRHK-----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR-LGDVDLIRGLFERAISLSLPPK 1772 (1810)
Q Consensus 1699 p~~~-----~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k-~gd~e~ar~lferal~~~~~p~ 1772 (1810)
-..+ .......-|.++++.+++++|..+|..++..+|++.+.+..|...+.+ .+..+....+|.+.-. .+|+
T Consensus 209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~--~y~r 286 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE--KYPR 286 (700)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh--cCcc
Confidence 2221 134555667788899999999999999999999988877777776653 3344444477777665 5554
Q ss_pred h
Q 000236 1773 K 1773 (1810)
Q Consensus 1773 ~ 1773 (1810)
.
T Consensus 287 ~ 287 (700)
T KOG1156|consen 287 H 287 (700)
T ss_pred c
Confidence 3
No 246
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2.5e-05 Score=89.34 Aligned_cols=118 Identities=18% Similarity=0.143 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----cHHHHHHHHH
Q 000236 1618 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQ 1692 (1810)
Q Consensus 1618 ~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~----~~~~A~~ll~ 1692 (1810)
.+....-.+..++.+|.+ +-|..++.+|.+.|++..|...|.++.+..|+++.+|..|++.++.+ .-.++.++|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 455555666666666665 67777777777777777777777777777777777777777666665 3456667777
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000236 1693 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1737 (1810)
Q Consensus 1693 ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~ 1737 (1810)
+|++.+|.+ +.....+|.-++..|++.+|...++.++...|.+
T Consensus 218 ~al~~D~~~--iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPAN--IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 777766665 4666666666666777777777777777666654
No 247
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core.
Probab=98.20 E-value=4.8e-06 Score=82.14 Aligned_cols=76 Identities=20% Similarity=0.429 Sum_probs=65.2
Q ss_pred CEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCC-----------ccccCCCCcEEEEEEEEEeCCC-----CEE
Q 000236 1255 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES-----------PEKEFPIGKLVAGRVLSVEPLS-----KRV 1318 (1810)
Q Consensus 1255 ~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~-----------~~~~f~~G~~V~~~Vl~vd~~~-----~ri 1318 (1810)
+++.|+|+++.++|+||++. +++|++|++++++++... +...|++||.|+++|+++|.+. +++
T Consensus 1 ~vv~g~V~~i~~~GifV~l~-~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~i 79 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG-PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESKI 79 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc-CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCceE
Confidence 47899999999999999998 599999999999876432 3578999999999999999764 589
Q ss_pred EEEEecCcccccc
Q 000236 1319 EVTLKTSDSRTAS 1331 (1810)
Q Consensus 1319 ~lSlk~~~~~~~~ 1331 (1810)
.||+|.....|+.
T Consensus 80 ~ls~k~~~~g~~~ 92 (99)
T cd04460 80 GLTMRQPGLGKLE 92 (99)
T ss_pred EEEEecCCCCcHH
Confidence 9999998876653
No 248
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.20 E-value=0.00027 Score=81.85 Aligned_cols=184 Identities=11% Similarity=-0.010 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000236 1560 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1635 (1810)
Q Consensus 1560 ~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~---- 1635 (1810)
+...|+..+.-....|++++|.+.|++++...|.+.......+|++++.+ +.+ +.+.|...|++.++..|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy--~~~--~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY--KNA--DLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHhCcCCCchH
Confidence 56667777777888999999999999999988876655555567766665 456 4589999999999999874
Q ss_pred HHHHHHHHHHHHhC------------------ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHh
Q 000236 1636 KVHLALLGLYERTE------------------QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS 1697 (1810)
Q Consensus 1636 ~i~~~l~~~~~~~g------------------~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~ 1697 (1810)
.+++..+..+...+ ...+|...|++.+++||++.- ..+|...+..+-..
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-------------a~~A~~rl~~l~~~ 173 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-------------TTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-------------HHHHHHHHHHHHHH
Confidence 45555554432211 135678899999999998755 33333333332222
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000236 1698 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT---DLWSIYLDQEIRLGDVDLIRGLFERAI 1765 (1810)
Q Consensus 1698 ~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~---~lw~~ya~~e~k~gd~e~ar~lferal 1765 (1810)
+. .--+..|.++++.|.+..|..-|+.++..+|... +.....+..+...|..+.|........
T Consensus 174 la-----~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LA-----KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH-----HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 21 1233678899999999999999999999999864 466667778889999999988766543
No 249
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=98.18 E-value=2.6e-06 Score=105.78 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=82.8
Q ss_pred CcccCCEEEEEEEEEeCCeE-EEEEcchhhcchh-----hHHhhhhhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeec
Q 000236 417 KFKVGAELVFRVLGVKSKRI-TVTHKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490 (1810)
Q Consensus 417 ~~~vG~~v~~rVl~v~~~~i-~ls~k~~l~~~~~-----~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~ 490 (1810)
.+++|+.+++.|...+-+|+ ..+.|+.+..... ..+..|.+ +.|+++.|+|.++.++|+||++ +++.||+|.
T Consensus 86 ~~~vGD~ie~~I~~~~fgRia~q~aKq~i~Qkire~ere~i~~eyk~-~~GeIV~G~V~ri~~~giiVDL-ggvea~LP~ 163 (470)
T PRK09202 86 DAEVGDYIEEEIESVDFGRIAAQTAKQVIVQKIREAERERVYEEYKD-RVGEIITGVVKRVERGNIIVDL-GRAEAILPR 163 (470)
T ss_pred cccCCCeEEEEEccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCEEEEE-CCeEEEecH
Confidence 48999999998877644433 3444444433222 12223322 3799999999999999999999 789999999
Q ss_pred cccCCCCCCCCCcCccCCCEEEEEEEEEeCCCC--eEEEEEee
Q 000236 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFMM 531 (1810)
Q Consensus 491 s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~--~l~lS~k~ 531 (1810)
++++ |.+.|++|+.++|.|+++|++++ .+.||...
T Consensus 164 sE~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt~ 200 (470)
T PRK09202 164 KEQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRTH 200 (470)
T ss_pred HHcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeCc
Confidence 9995 66789999999999999999877 99999864
No 250
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=1.5e-05 Score=90.30 Aligned_cols=128 Identities=15% Similarity=0.078 Sum_probs=90.3
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000236 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722 (1810)
Q Consensus 1644 ~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~ 1722 (1810)
=+.+.++|++|...|.+|+...|.++-.|.+.|..|.+. .++.|.+-.+.||..+|.+ .++|.+++..++.+|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--skay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--SKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--HHHHHHHHHHHHccCcHHH
Confidence 345667777777777777777777777777777777777 7777777777777777655 4777777777777777777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHhcCCCchh
Q 000236 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD---LIRGLFERAISLSLPPKK 1773 (1810)
Q Consensus 1723 Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e---~ar~lferal~~~~~p~~ 1773 (1810)
|.+.|.++|..+|.+...|..+-..+.+.+... .+...|+-+......|+-
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 777777777777777777777766666555544 455555555554443433
No 251
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible.
Probab=98.17 E-value=6.9e-06 Score=74.54 Aligned_cols=63 Identities=21% Similarity=0.469 Sum_probs=54.7
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCC--CeEEEe
Q 000236 635 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLS 704 (1810)
Q Consensus 635 ~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~--~rl~lS 704 (1810)
+.|+.+.|+|.+++++|+||.+ ++..||+|.++++. .+.|++||+|++.|++++.++ ..+.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdi-g~~eg~lp~~e~~~------~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDL-GKVEAILPKKEQIP------GESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEc-CCeEEEeeHHHCCC------CCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 4799999999999999999999 45999999999863 456999999999999999654 457776
No 252
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.17 E-value=2e-05 Score=75.65 Aligned_cols=96 Identities=19% Similarity=0.137 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000236 1638 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1716 (1810)
Q Consensus 1638 ~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~ 1716 (1810)
|..++..+...|++++|...|+++++..+....+|..++.++... ++++|.++|+++++..|... .+|..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHHH
Confidence 444455555555555555555555555544445555555555555 55555555555555444432 344455555555
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 000236 1717 NGVADRGRSMFEGILSEYP 1735 (1810)
Q Consensus 1717 ~g~~e~Ar~lfe~al~~~P 1735 (1810)
.|++++|...|++++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 5555555555555544443
No 253
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.17 E-value=8.3e-05 Score=90.01 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=116.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHh-c------------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000236 1657 LLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------------QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1723 (1810)
Q Consensus 1657 ~~e~~lk~~~~~~~~w~~~a~~~~~~-~------------~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~A 1723 (1810)
-|++.++..|.+.+.|+.|+.+.-.. . .+....+|++||+.+|.+ ..+++.|.....+.-+.+..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHH
Confidence 35566666666666666666665544 2 456678999999999866 58999999988888899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHhc-----CCC----------chhHHHHHHHHHHHH
Q 000236 1724 RSMFEGILSEYPKRTDLWSIYLDQEIR---LGDVDLIRGLFERAISL-----SLP----------PKKMKFLFKKYLEYE 1785 (1810)
Q Consensus 1724 r~lfe~al~~~P~~~~lw~~ya~~e~k---~gd~e~ar~lferal~~-----~~~----------p~~~~~lw~~yl~~E 1785 (1810)
...+++++..+|.+..+|..|+++... .-.++..+.+|.++++. .-. ...+-.++.++..|+
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875 23688999999999972 000 123446788899999
Q ss_pred HHcCCHHHHHHHHHHHHHHH
Q 000236 1786 KSVGEEERIEYVKQKAMEYV 1805 (1810)
Q Consensus 1786 ~~~G~~~~a~~v~~rAl~~v 1805 (1810)
...|-.+.|.++++-.+++-
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHCCchHHHHHHHHHHHHHH
Confidence 99999999999999988873
No 254
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=98.15 E-value=1.7e-05 Score=90.65 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=78.3
Q ss_pred CcccCCEEEEEEEEE---eCCeEEEEEcchhhcchhhHHhhhhhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeecccc
Q 000236 417 KFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493 (1810)
Q Consensus 417 ~~~vG~~v~~rVl~v---~~~~i~ls~k~~l~~~~~~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~ 493 (1810)
.|..+..+.+.+... ..+ .++.++.-. .|. -++|+++.|+|+++.++|++|++.++..|++|.+++
T Consensus 28 ty~~~g~i~As~~G~~~~~~~--~i~V~p~~~--------~y~-P~vGDiViG~V~~i~~~~~~vdI~~~~~g~L~~s~i 96 (235)
T PRK04163 28 TYKENGKIYSTVVGLVDIKDD--KVRVIPLEG--------KYI-PKVGDLVIGKVTDVTFSGWEVDINSPYKAYLPVSEV 96 (235)
T ss_pred eEEeCCEEEEEEeEEEEEECC--EEEEEECCC--------ccc-CCCCCEEEEEEEEEeCceEEEEeCCCceeEEEHHHc
Confidence 355566677766665 222 344333211 121 157999999999999999999998899999999999
Q ss_pred CCCCC----CCCCcCccCCCEEEEEEEEEeCCCCeEEEEEee
Q 000236 494 GLDPG----CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531 (1810)
Q Consensus 494 ~~~~~----~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~ 531 (1810)
++.++ .++...|++|+.|+|+|+++|+++ .+.||++.
T Consensus 97 ~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~~~-~~~LS~k~ 137 (235)
T PRK04163 97 LGRPVNVEGTDLRKYLDIGDYIIAKVKDVDRTR-DVVLTLKG 137 (235)
T ss_pred CCCccccchhhhHhhCCCCCEEEEEEEEECCCC-cEEEEEcC
Confidence 88754 577788999999999999999754 59999965
No 255
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.15 E-value=3.7e-05 Score=78.47 Aligned_cols=103 Identities=10% Similarity=0.105 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC-hHHHHHHHH
Q 000236 1637 VHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTA 1711 (1810)
Q Consensus 1637 i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~---~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a 1711 (1810)
+++..+..+.+.|++++|...|++++..+|++ ..+++.++..+.+. ++++|..+|++++...|.+. ...++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45555566666666666666666666655543 45566666666666 66666666666666665542 134566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000236 1712 ILEFKNGVADRGRSMFEGILSEYPKRTD 1739 (1810)
Q Consensus 1712 ~l~~~~g~~e~Ar~lfe~al~~~P~~~~ 1739 (1810)
.++.+.|++++|...|++++..+|++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666666666543
No 256
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=5.6e-05 Score=80.59 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=85.5
Q ss_pred HhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHH
Q 000236 1647 RTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVAD 1721 (1810)
Q Consensus 1647 ~~g~~~~A~~~~e~~lk~~~~~---~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~l~~~~g~~e 1721 (1810)
..++...+...++.+.+.+|.+ ...++.++..++.. ++++|...|+.++...|... ...+++.+|.+++..|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4677777777788888887776 55666777777777 88888888888887664431 1346777788888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000236 1722 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765 (1810)
Q Consensus 1722 ~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal 1765 (1810)
+|...++.. ...+-...+|...++++.+.|+.+.|+..|++|+
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888888663 3334455677777888888888888888887764
No 257
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.00036 Score=84.58 Aligned_cols=219 Identities=14% Similarity=0.051 Sum_probs=150.5
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHH-HHHHHHH---HHHHcCCC
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN-IWVAYFN---LENEYGNP 1616 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~-lW~~yl~---le~~~g~~ 1616 (1810)
.+++.+...|..++..+ .+.......++.++..+.++..+...+.+++.-- +.-+..+ +-..+.. .+...+
T Consensus 238 k~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~-- 312 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKRE-- 312 (539)
T ss_pred hhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHH--
Confidence 34788889999999888 8888889999999999999999988888775311 1100111 1111111 223334
Q ss_pred CHHHHHHHHHHHHhcCCCH-------------HHHHH--------------HHHHHHHhCChHHHHHHHHHHHHhcCCCH
Q 000236 1617 PEEAVVKVFQRALQYCDPK-------------KVHLA--------------LLGLYERTEQNKLADELLYKMIKKFKHSC 1669 (1810)
Q Consensus 1617 ~~e~a~~vferAl~~~~~~-------------~i~~~--------------l~~~~~~~g~~~~A~~~~e~~lk~~~~~~ 1669 (1810)
+.+.++..|++++.-.-.. ..+.. -++-+.+.|+|.+|...|.+++++.|.+.
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 3478888888888654321 11111 12234567778888888888888888888
Q ss_pred HHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000236 1670 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1748 (1810)
Q Consensus 1670 ~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e 1748 (1810)
..|.+.|.+|.+. .+..|.+-.+.+++..|.. ++.|++-|..++-..+++.|...|+.++..+|++..+.-.|..+.
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~--~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNF--IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 8888888888888 8888888888888887776 577887788887777888888888888888888877777776666
Q ss_pred HHcCChHHHHHHHHHHHh
Q 000236 1749 IRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1749 ~k~gd~e~ar~lferal~ 1766 (1810)
..+........+++|++.
T Consensus 471 ~a~~~~~~~ee~~~r~~~ 488 (539)
T KOG0548|consen 471 EAQRGDETPEETKRRAMA 488 (539)
T ss_pred HHhhcCCCHHHHHHhhcc
Confidence 543333334455666554
No 258
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.13 E-value=0.0003 Score=79.51 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=115.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000236 1560 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1635 (1810)
Q Consensus 1560 ~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~---- 1635 (1810)
....++..+..+++.|++++|...|++.....|.+.-.....+|+++.. ...+ +.+.|...|++.++..|..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~--y~~~--~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAY--YKQG--DYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH--HHTT---HHHHHHHHHHHHHH-TT-TTHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH--HHcC--CHHHHHHHHHHHHHHCCCCcchh
Confidence 3456677777788889999999999998888887665555555555554 4556 4488888888888888864
Q ss_pred HHHHHHHHHHH-----------HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhCCCCChH
Q 000236 1636 KVHLALLGLYE-----------RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHI 1704 (1810)
Q Consensus 1636 ~i~~~l~~~~~-----------~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~p~~~~~ 1704 (1810)
.+++.++..+. ......+|...|++++.+||++.- ..+|...+..+-..+ .
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y-------------~~~A~~~l~~l~~~l-----a 141 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY-------------AEEAKKRLAELRNRL-----A 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT-------------HHHHHHHHHHHHHHH-----H
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH-------------HHHHHHHHHHHHHHH-----H
Confidence 44444444322 223355778888888888887654 333333333322222 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHH
Q 000236 1705 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIYLDQEIRLGDVDLIR 1758 (1810)
Q Consensus 1705 ~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~---lw~~ya~~e~k~gd~e~ar 1758 (1810)
.--+..|.++++.|.+..|..-|+.+++.+|+... .+...+..+.+.|..+.+.
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 22345688899999999999999999999999754 5777778888888877554
No 259
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible.
Probab=98.11 E-value=1.3e-05 Score=72.63 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=54.6
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCC--CEEEEE
Q 000236 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--KRVEVT 1321 (1810)
Q Consensus 1252 ~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~--~ri~lS 1321 (1810)
+.|++++|+|.++.++|+||+++. .+|++|.++++ |.+.|++|+.+++.|++++.++ .+|.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig~-~eg~lp~~e~~------~~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLGK-VEAILPKKEQI------PGESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcCC-eEEEeeHHHCC------CCCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 469999999999999999999985 99999999997 3456899999999999998654 457666
No 260
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.11 E-value=0.00058 Score=96.01 Aligned_cols=265 Identities=11% Similarity=0.018 Sum_probs=180.5
Q ss_pred ccCCCCcHHHHHHHHHcCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchh-hHHHHHHHHHHHHHHc
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSS-----FVWIKYMAFMLSMADVEKARSIAERALQTINIREEN-EKLNIWVAYFNLENEY 1613 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~-----~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~-e~~~lW~~yl~le~~~ 1613 (1810)
.++..++...+++++...|... ..+..++..+...|++++|+..+++++......... .....+..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 4567888888898886544322 234556666788999999999999999653321111 1122334445566777
Q ss_pred CCCCHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-----CHHHHHHHHHHH
Q 000236 1614 GNPPEEAVVKVFQRALQYCDP---------KKVHLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVWLRRVQRL 1679 (1810)
Q Consensus 1614 g~~~~e~a~~vferAl~~~~~---------~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~-----~~~~w~~~a~~~ 1679 (1810)
| +.+.|...+++++..... ..++..++.++...|++++|...+++++..... ....+..++.++
T Consensus 545 G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 545 G--FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred C--CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 8 569999999999886432 134556677888889999999999998875421 234455577777
Q ss_pred HHh-cHHHHHHHHHHHHHhCCCCC-hHHH--HHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH
Q 000236 1680 LKQ-QQEGVQAVVQRALLSLPRHK-HIKF--ISQ--TAILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEI 1749 (1810)
Q Consensus 1680 ~~~-~~~~A~~ll~ralk~~p~~~-~~~~--~~~--~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~----lw~~ya~~e~ 1749 (1810)
... ++++|.+.+++++...+... +... ... .+..+...|+.+.|+.+++......+.... .+..++..+.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 778 99999999999977644321 1111 111 113334578999999998887653322222 2567788888
Q ss_pred HcCChHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000236 1750 RLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807 (1810)
Q Consensus 1750 k~gd~e~ar~lferal~~----~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~~ 1807 (1810)
..|++++|..+|++++.. ....... .....+.......|+.++|...+.+|++..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a-~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLN-RNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999872 1122222 34455566678899999999999999987653
No 261
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=98.09 E-value=2.7e-06 Score=105.63 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=89.2
Q ss_pred cEEEeecccchHHHHhhcccccCCCEEEEEEEEEeecCCeEEEEeeccccc-----ccccccccCC--CCCEEEEEEEEE
Q 000236 312 PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE-----GLVFTHSDVK--PGMVVKGKVIAV 384 (1810)
Q Consensus 312 ~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~~~~~~~s~k~~~~~-----~~~~~~~~l~--~G~~v~g~V~~v 384 (1810)
.++++.++. ......+++|+.+.+.|...+ .++....+.++.... ++...++.++ .|++|+|+|.++
T Consensus 72 ~~eI~L~eA-----k~~~~~~~vGD~ie~~I~~~~-fgRia~q~aKq~i~Qkire~ere~i~~eyk~~~GeIV~G~V~ri 145 (470)
T PRK09202 72 TKEISLEEA-----RKIDPDAEVGDYIEEEIESVD-FGRIAAQTAKQVIVQKIREAERERVYEEYKDRVGEIITGVVKRV 145 (470)
T ss_pred cceeeHHHH-----hhhCccccCCCeEEEEEcccc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEE
Confidence 356665443 222335899999999998766 445444444433322 1234577776 899999999999
Q ss_pred ecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE--eCC--eEEEEEcch
Q 000236 385 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSK--RITVTHKKT 443 (1810)
Q Consensus 385 ~~~G~~V~~~~~v~g~vp~~~ls~~~~~~~~~~~~vG~~v~~rVl~v--~~~--~i~ls~k~~ 443 (1810)
+++|++|+++ +++||+|.++++ |.+.|++|+.|+|.|+.+ .++ +|.||++..
T Consensus 146 ~~~giiVDLg-gvea~LP~sE~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt~p 201 (470)
T PRK09202 146 ERGNIIVDLG-RAEAILPRKEQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRTHP 201 (470)
T ss_pred ecCCEEEEEC-CeEEEecHHHcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeCcH
Confidence 9999999996 899999998874 778999999999999999 334 899998753
No 262
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.08 E-value=0.00012 Score=76.72 Aligned_cols=97 Identities=9% Similarity=-0.111 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000236 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1714 (1810)
Q Consensus 1636 ~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~ 1714 (1810)
+..+.++..+.+.|++++|..+|+.++...|.+...|+.++-++-.. ++++|...|.+|+...|.+ +..+...|..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--p~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--PQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--chHHHHHHHHH
Confidence 55667777788999999999999999999999999999999999988 9999999999999999876 47889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 000236 1715 FKNGVADRGRSMFEGILSEY 1734 (1810)
Q Consensus 1715 ~~~g~~e~Ar~lfe~al~~~ 1734 (1810)
+..|+.+.|+..|+.++...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999998766
No 263
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]
Probab=98.06 E-value=1.1e-05 Score=85.06 Aligned_cols=77 Identities=30% Similarity=0.591 Sum_probs=64.3
Q ss_pred CCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCccccc-----------CcccccCCCCEEEEEEEEEecCC----
Q 000236 1342 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEK---- 1406 (1810)
Q Consensus 1342 ~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~-----------~~~~~~~~G~~V~~~I~~id~~~---- 1406 (1810)
-.|++|+|.|+++.+||+||.+++ .+||+|+|++.|+++. .-+..+++||.|+++|+.+....
T Consensus 80 ~~gEVV~GeVv~~~~~G~fV~igp--~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~~ 157 (183)
T COG1095 80 FRGEVVEGEVVEVVEFGAFVRIGP--LDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRPR 157 (183)
T ss_pred ccccEEEEEEEEEeecceEEEecc--ccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCccc
Confidence 468899999999999999999985 9999999999998541 12347999999999999997655
Q ss_pred -CeeEEeecccccCC
Q 000236 1407 -RRISLGMKSSYFKN 1420 (1810)
Q Consensus 1407 -~ri~lslk~~~~~~ 1420 (1810)
-+|.+++|+.+.+.
T Consensus 158 ~~~I~lTmrq~~LGk 172 (183)
T COG1095 158 ESKIGLTMRQPGLGK 172 (183)
T ss_pred cceEEEEeccccCCc
Confidence 57889999866643
No 264
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=3.9e-05 Score=73.56 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000236 1671 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1749 (1810)
Q Consensus 1671 ~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~ 1749 (1810)
+|+.++..+..+ ++++|...|+++++..|.. ..+|..+|.++...+++++|..+|++++...|.+..+|..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN--ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 577888888888 9999999999999888776 3788889999999999999999999999999988889999999999
Q ss_pred HcCChHHHHHHHHHHHh
Q 000236 1750 RLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1750 k~gd~e~ar~lferal~ 1766 (1810)
..|+.+.|+..|++++.
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 99999999999998887
No 265
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE.
Probab=98.05 E-value=1.6e-05 Score=87.28 Aligned_cols=78 Identities=26% Similarity=0.559 Sum_probs=66.4
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCccccc-----------CcccccCCCCEEEEEEEEEe-----c
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVD-----K 1404 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~-----------~~~~~~~~G~~V~~~I~~id-----~ 1404 (1810)
..+|+++.|+|++++++|+||+|+ .++|++|.+++.+++.. +....|+.||.|+++|++++ +
T Consensus 79 p~~gEvv~G~V~~v~~~GifV~lg--~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~ 156 (179)
T TIGR00448 79 PELGEIVEGEVIEIVEFGAFVSLG--PFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRP 156 (179)
T ss_pred ccCCCEEEEEEEEEEeeEEEEEeC--CceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCC
Confidence 346999999999999999999996 49999999999866432 23467999999999999998 6
Q ss_pred CCCeeEEeecccccCC
Q 000236 1405 EKRRISLGMKSSYFKN 1420 (1810)
Q Consensus 1405 ~~~ri~lslk~~~~~~ 1420 (1810)
+..+|.+|+|+.+.+.
T Consensus 157 ~~~~I~lt~k~~~LG~ 172 (179)
T TIGR00448 157 EGSKIGLTMRQPLLGK 172 (179)
T ss_pred CcceEEEEeccCcCCc
Confidence 6789999999987744
No 266
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=6.5e-05 Score=91.77 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHh
Q 000236 1619 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1697 (1810)
Q Consensus 1619 e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~ 1697 (1810)
+.|.++|++..+..|. ++..++.++...++..+|.++++++++..|.+..++...++|+++. +++.|.++.++|+..
T Consensus 186 ~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l 263 (395)
T PF09295_consen 186 DEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL 263 (395)
T ss_pred HHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 5555555555544432 3334445554555555555555555555555555555555555555 555555555555555
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000236 1698 LPRHKHIKFISQTAILEFKNGVADRGRSMFE 1728 (1810)
Q Consensus 1698 ~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe 1728 (1810)
.|.. ...|..+|+.|.+.|+++.|...++
T Consensus 264 sP~~--f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 264 SPSE--FETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred Cchh--HHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 5544 2455555555555555555554443
No 267
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.04 E-value=6.3e-05 Score=92.52 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=92.9
Q ss_pred HHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000236 1672 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1750 (1810)
Q Consensus 1672 w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k 1750 (1810)
+...|..++.. ++++|.++|++|++..|.+ ..+|..+|.+++..|++++|...|++++..+|.+..+|..++.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~--~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN--AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34456667777 9999999999999999987 58999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCchhHH-HHHHHHH
Q 000236 1751 LGDVDLIRGLFERAISLSLPPKKMK-FLFKKYL 1782 (1810)
Q Consensus 1751 ~gd~e~ar~lferal~~~~~p~~~~-~lw~~yl 1782 (1810)
.|+++.|...|++++. +.|.+.. ..|...+
T Consensus 83 lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999999 5554441 3354444
No 268
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=7e-05 Score=76.43 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 000236 1669 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSI 1743 (1810)
Q Consensus 1669 ~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~-~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~---~~lw~~ 1743 (1810)
+++++..+..+.++ ++++|...|++++...|.+.. ..+++.+|.++++.|++++|..+|++++..+|.. ..+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 46788899999999 999999999999999887532 4688999999999999999999999999999885 568999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000236 1744 YLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1774 (1810)
Q Consensus 1744 ya~~e~k~gd~e~ar~lferal~~~~~p~~~ 1774 (1810)
++.++.+.|+.+.|...|++++. ..|+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~ 110 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK--RYPGSS 110 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH--HCcCCh
Confidence 99999999999999999999999 555554
No 269
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.01 E-value=7.4e-05 Score=95.11 Aligned_cols=187 Identities=14% Similarity=0.074 Sum_probs=159.2
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1620 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~ 1620 (1810)
.+...+-..|=++++.+|+-+..|..++.+|....++-+|+..|++|-+..+. + ...|-+....+....+ -+.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-d----aeaaaa~adtyae~~~--we~ 544 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-D----AEAAAASADTYAEEST--WEE 544 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-h----hhhHHHHHHHhhcccc--HHH
Confidence 34566667788888999999999999999998888999999999999976553 2 4578888888888884 488
Q ss_pred HHHHHHHHHhcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Q 000236 1621 VVKVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1696 (1810)
Q Consensus 1621 a~~vferAl~~~~~~---~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk 1696 (1810)
|..+.-++-+..+.. .-|.+++-+|...++.-.|...|+.+++..|.+...|..+++.|.+. ++..|.+.|.+|..
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 888877777777654 78888888999999999999999999999999999999999999999 99999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000236 1697 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1736 (1810)
Q Consensus 1697 ~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~ 1736 (1810)
..|.+. -..+.-|-++...|.+.+|...++..+....+
T Consensus 625 LrP~s~--y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 625 LRPLSK--YGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred cCcHhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 998874 45556677888899999999999999877654
No 270
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00011 Score=84.26 Aligned_cols=119 Identities=11% Similarity=0.088 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHH
Q 000236 1651 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG---VADRGRSM 1726 (1810)
Q Consensus 1651 ~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g---~~e~Ar~l 1726 (1810)
.++...-++.-+...|++.+-|..++..|+.+ +++.|...|.+|++..|.+ +.++..||..++.+. +..+|+.+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 45566667788889999999999999999999 9999999999999999988 599999999776443 57899999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 000236 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1772 (1810)
Q Consensus 1727 fe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~ 1772 (1810)
|+++++.+|.+....+.++.-++..|++.+|...++.++. ..|++
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~-~lp~~ 260 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD-LLPAD 260 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCC
Confidence 9999999999999999999999999999999999999999 45544
No 271
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=97.96 E-value=1.9e-05 Score=105.71 Aligned_cols=76 Identities=32% Similarity=0.649 Sum_probs=65.6
Q ss_pred cCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccc-----------cCcccccCCCCEEEEEEEEEecCC
Q 000236 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1406 (1810)
Q Consensus 1338 ~~~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~-----------~~~~~~~~~G~~V~~~I~~id~~~ 1406 (1810)
+..-++|+++.|.|++|++||+||+|.+.+++|++|+|++++++. ++....|++||.|+|+|.++|..+
T Consensus 622 yl~~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~ 701 (709)
T TIGR02063 622 YMSEKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDT 701 (709)
T ss_pred hhhccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEeccc
Confidence 344578999999999999999999998646999999999986643 223467999999999999999999
Q ss_pred CeeEEee
Q 000236 1407 RRISLGM 1413 (1810)
Q Consensus 1407 ~ri~lsl 1413 (1810)
++|.|++
T Consensus 702 ~~I~~~l 708 (709)
T TIGR02063 702 GKIDFEL 708 (709)
T ss_pred CeEEEEE
Confidence 9999986
No 272
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.93 E-value=0.00025 Score=75.53 Aligned_cols=135 Identities=14% Similarity=0.117 Sum_probs=107.9
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHH
Q 000236 1649 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSM 1726 (1810)
Q Consensus 1649 g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~l~~~~g~~e~Ar~l 1726 (1810)
.+.++|...|+.++... .. +...+...+++.++.+|... ....++.+|..++..|++++|...
T Consensus 6 ~~~~~a~~~y~~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~ 70 (145)
T PF09976_consen 6 QQAEQASALYEQALQAL---------------QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAA 70 (145)
T ss_pred HHHHHHHHHHHHHHHHH---------------HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34456666666666432 34 78889999999999999873 346788899999999999999999
Q ss_pred HHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000236 1727 FEGILSEYPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802 (1810)
Q Consensus 1727 fe~al~~~P~~---~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl 1802 (1810)
|+.++...|+. ..++..++.+++..|+++.|...++.+-. ++-.. ..|....+.....|+.++|+..|++|+
T Consensus 71 l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~-~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 71 LEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKA-LAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHH-HHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999988654 34688889999999999999999977433 22233 467778889999999999999999985
No 273
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=97.92 E-value=8.5e-06 Score=96.99 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=68.3
Q ss_pred ccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeec
Q 000236 632 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 706 (1810)
Q Consensus 632 ~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk 706 (1810)
.++..|.+++++|+++.++|+||+|+++..||+|.|+++.+.+..|++.+.+||.+.++.+..|+..+.+++|.+
T Consensus 664 ~~l~~g~vy~~tIt~~rd~G~~V~l~p~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~~g~~~ls~ra 738 (760)
T KOG1067|consen 664 QDLEFGGVYTATITEIRDTGVMVELYPMQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDPRGGIMLSSRA 738 (760)
T ss_pred cceEeeeEEEEEEeeecccceEEEecCCchhhccchhcccccccChHHHHhhcceeEEEEEeecCccceeehhhh
Confidence 456789999999999999999999999999999999999999999999999999999999999987666665543
No 274
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.91 E-value=0.006 Score=71.06 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH-HH
Q 000236 1651 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM-FE 1728 (1810)
Q Consensus 1651 ~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~l-fe 1728 (1810)
...|++.-..++|..|+....-..-+..+++. +.-++-.+++.+.+..| |+.+|..|... +.|+....|-- ..
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP---HP~ia~lY~~a--r~gdta~dRlkRa~ 319 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP---HPDIALLYVRA--RSGDTALDRLKRAK 319 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC---ChHHHHHHHHh--cCCCcHHHHHHHHH
Confidence 44555555555555555555555555555555 55555556666655544 23444444332 23332222111 11
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 000236 1729 GILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV-GEEERIEYVKQKAME 1803 (1810)
Q Consensus 1729 ~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~-G~~~~a~~v~~rAl~ 1803 (1810)
++-..-|++..-.+..+......|++..||.--|.+.. ..|.. .+|....++|+-. ||..++++.+.+|+.
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pre--s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRE--SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchh--hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 11122344554444445555556888888888888887 66654 4888888987765 999999999999875
No 275
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.91 E-value=0.00014 Score=84.74 Aligned_cols=104 Identities=11% Similarity=0.181 Sum_probs=84.0
Q ss_pred HHHHHHHH-HHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCC-ChHHHHHH
Q 000236 1636 KVHLALLG-LYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH-KHIKFISQ 1709 (1810)
Q Consensus 1636 ~i~~~l~~-~~~~~g~~~~A~~~~e~~lk~~~~~---~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~-~~~~~~~~ 1709 (1810)
+.|+..+. ++.+.+++++|...|+..++.||++ +.+|+.+|..|+.. ++++|...|+++++.+|.+ ....+|..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 44444443 4456688999999999999999877 57888888888888 9999999999999888875 33578888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000236 1710 TAILEFKNGVADRGRSMFEGILSEYPKRTD 1739 (1810)
Q Consensus 1710 ~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~ 1739 (1810)
.|..+...|+++.|+.+|+++++.+|++..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 888888889999999999999999998764
No 276
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.91 E-value=0.0021 Score=90.32 Aligned_cols=238 Identities=13% Similarity=0.078 Sum_probs=163.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHH
Q 000236 1567 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHL 1639 (1810)
Q Consensus 1567 y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-------~i~~ 1639 (1810)
.+..+...|+++.|...+++++...+..........+..+...+...| +.+.|+..+++|+...... ..+.
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G--~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG--ELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 344556889999999999999975553222112233444555566788 5699999999999764321 3455
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCC---ChHHHH
Q 000236 1640 ALLGLYERTEQNKLADELLYKMIKKFKH--------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH---KHIKFI 1707 (1810)
Q Consensus 1640 ~l~~~~~~~g~~~~A~~~~e~~lk~~~~--------~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~---~~~~~~ 1707 (1810)
.++.++...|++++|...+++++..... ...++..++..+... ++++|...+++++...... .....+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 6777889999999999999998875421 122344667778888 9999999999998864421 234556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHH-----HHHHHHHcCChHHHHHHHHHHHhcCCCchhH--HHHH
Q 000236 1708 SQTAILEFKNGVADRGRSMFEGILSEYPKRT--DLWSI-----YLDQEIRLGDVDLIRGLFERAISLSLPPKKM--KFLF 1778 (1810)
Q Consensus 1708 ~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~--~lw~~-----ya~~e~k~gd~e~ar~lferal~~~~~p~~~--~~lw 1778 (1810)
...+.++...|+++.|+..++++....+... ..|.. .+..+...|+.+.|+..+.+.... ...... ...+
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~ 694 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHH
Confidence 6678889999999999999999976543321 11211 123334579999999998886651 111111 0123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000236 1779 KKYLEYEKSVGEEERIEYVKQKAMEYVES 1807 (1810)
Q Consensus 1779 ~~yl~~E~~~G~~~~a~~v~~rAl~~v~~ 1807 (1810)
..+.......|+.++|...+++|++..+.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~ 723 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARS 723 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44555577789999999999999987543
No 277
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00026 Score=80.43 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=94.5
Q ss_pred HHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 000236 1676 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1754 (1810)
Q Consensus 1676 a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~ 1754 (1810)
+.-+++. +|++|...|.+||+..|.+. -+|-+-|..|.++|.++.|.+-++.+++.+|.....|..+...+..+|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 4556677 99999999999999999984 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHHcC
Q 000236 1755 DLIRGLFERAISLSLPPKKMKFLFKKYLEY-EKSVG 1789 (1810)
Q Consensus 1755 e~ar~lferal~~~~~p~~~~~lw~~yl~~-E~~~G 1789 (1810)
+.|...|.+||. +.|.+. .|+.-+.. |.+.+
T Consensus 166 ~~A~~aykKaLe--ldP~Ne--~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNE--SYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHhhhc--cCCCcH--HHHHHHHHHHHHhc
Confidence 999999999999 888877 44444443 44443
No 278
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE.
Probab=97.90 E-value=3.6e-05 Score=84.65 Aligned_cols=74 Identities=30% Similarity=0.455 Sum_probs=63.5
Q ss_pred CCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCccccc-C----------cccCcCCCCEEEEEEEEee-----CCCC
Q 000236 636 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA-D----------LSKTYYVGQSVRSNILDVN-----SETG 699 (1810)
Q Consensus 636 ~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~-~----------~~~~~~~Gq~V~~~V~~vd-----~~~~ 699 (1810)
.|+++.|.|++++++|+||++ +.+.|++|.+++.+++.. + ....|++||+|+++|.+++ ++..
T Consensus 81 ~gEvv~G~V~~v~~~GifV~l-g~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~~~ 159 (179)
T TIGR00448 81 LGEIVEGEVIEIVEFGAFVSL-GPFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRPEGS 159 (179)
T ss_pred CCCEEEEEEEEEEeeEEEEEe-CCceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCCCcc
Confidence 699999999999999999999 679999999999865432 2 2356999999999999998 6778
Q ss_pred eEEEeeccccc
Q 000236 700 RITLSLKQSCC 710 (1810)
Q Consensus 700 rl~lSlk~~~~ 710 (1810)
++.||+|+.-.
T Consensus 160 ~I~lt~k~~~L 170 (179)
T TIGR00448 160 KIGLTMRQPLL 170 (179)
T ss_pred eEEEEeccCcC
Confidence 99999997644
No 279
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0046 Score=75.83 Aligned_cols=242 Identities=14% Similarity=0.137 Sum_probs=154.3
Q ss_pred cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----Ccc----chhh-HH-HHHHHHHHHHHHcCCCCHHHHHHH
Q 000236 1556 SSPN-SSFVWIKYMAFMLSMADVEKARSIAERALQTI----NIR----EENE-KL-NIWVAYFNLENEYGNPPEEAVVKV 1624 (1810)
Q Consensus 1556 ~~P~-~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~----~~~----~e~e-~~-~lW~~yl~le~~~g~~~~e~a~~v 1624 (1810)
..|. +..+.++.+-.++..|++++|.++++.|++.. ... ++.+ .+ -+-.++...+.+.| +.++|.++
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G--qt~ea~~i 246 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG--QTAEASSI 246 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc--chHHHHHH
Confidence 3454 67788888889999999999999999995422 211 1111 12 34556666677888 56999999
Q ss_pred HHHHHhcCCCHHHHHH------------------------------HHH--------------------HHHHhCChHHH
Q 000236 1625 FQRALQYCDPKKVHLA------------------------------LLG--------------------LYERTEQNKLA 1654 (1810)
Q Consensus 1625 ferAl~~~~~~~i~~~------------------------------l~~--------------------~~~~~g~~~~A 1654 (1810)
|...++.++.+.-..+ ++. +..-.++.+.+
T Consensus 247 y~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 247 YVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999988754211111 111 11111222222
Q ss_pred HHHHHHHHHhcCCCHHHHH--HHHHHHHHh--cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000236 1655 DELLYKMIKKFKHSCKVWL--RRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1730 (1810)
Q Consensus 1655 ~~~~e~~lk~~~~~~~~w~--~~a~~~~~~--~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~a 1730 (1810)
++...+.- +..+...+ .+......+ .+..|.+++....+.+|.+. ..+.+..|++...+|+++.|..+++..
T Consensus 327 r~~~a~lp---~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s-~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 327 RELSASLP---GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS-KVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHhCC---ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22222111 12212111 111122222 47778888888888887763 467888899999999999999999955
Q ss_pred HHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000236 1731 LSEY-------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS-----LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1798 (1810)
Q Consensus 1731 l~~~-------P~~~~lw~~ya~~e~k~gd~e~ar~lferal~-----~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~ 1798 (1810)
+.+. -..+.+-.....++.+.++.+.|-+++..|+. +... .....+|.....|+.++|+.+++..++
T Consensus 403 ~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 4221 12344555566677888898999999999997 1112 223367889999999999999999999
Q ss_pred HHHHHH
Q 000236 1799 QKAMEY 1804 (1810)
Q Consensus 1799 ~rAl~~ 1804 (1810)
+.-.++
T Consensus 482 eel~k~ 487 (652)
T KOG2376|consen 482 EELVKF 487 (652)
T ss_pred HHHHHh
Confidence 988774
No 280
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=97.86 E-value=4.5e-05 Score=73.61 Aligned_cols=74 Identities=19% Similarity=0.390 Sum_probs=64.6
Q ss_pred CCCCcEEEEEEEEEeeceEEEEE--------eCCceeEEEeccccCccccc--CcccccCCCCEEEEEEEEEecCCCeeE
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITI--------ENTNLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRIS 1410 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l--------~~~~v~gl~~~sel~~~~~~--~~~~~~~~G~~V~~~I~~id~~~~ri~ 1410 (1810)
.++|++|-|+|++++...++|++ .. ...|.+|+|++...+.+ ++.+.|++||.|+|+|++++ +.+.+.
T Consensus 4 P~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~-~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~-~~~~~~ 81 (92)
T cd05791 4 PKVGSIVIARVTRINPRFAKVDILCVGGRPLKE-SFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLG-DASSYY 81 (92)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEEEEecCeecCC-CcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcC-CCCCcE
Confidence 47999999999999999999999 53 68999999999887776 68899999999999999997 346688
Q ss_pred Eeeccc
Q 000236 1411 LGMKSS 1416 (1810)
Q Consensus 1411 lslk~~ 1416 (1810)
||++..
T Consensus 82 Lst~~~ 87 (92)
T cd05791 82 LSTAEN 87 (92)
T ss_pred EEecCC
Confidence 998763
No 281
>PRK11642 exoribonuclease R; Provisional
Probab=97.86 E-value=3.5e-05 Score=102.74 Aligned_cols=74 Identities=31% Similarity=0.625 Sum_probs=64.9
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccc--c---------CcccccCCCCEEEEEEEEEecCCCee
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--D---------NIETIYRAGEKVKVKILKVDKEKRRI 1409 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~--~---------~~~~~~~~G~~V~~~I~~id~~~~ri 1409 (1810)
-++|+++.|+|++|++||+||+|++.+++|++|++++.+++. . +....|++||.|+++|.++|.++++|
T Consensus 641 ~~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rkI 720 (813)
T PRK11642 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERKI 720 (813)
T ss_pred ccCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCeE
Confidence 378999999999999999999998756999999999987632 1 23467999999999999999999999
Q ss_pred EEeec
Q 000236 1410 SLGMK 1414 (1810)
Q Consensus 1410 ~lslk 1414 (1810)
.|++-
T Consensus 721 ~f~l~ 725 (813)
T PRK11642 721 DFSLI 725 (813)
T ss_pred EEEEe
Confidence 99984
No 282
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0049 Score=75.57 Aligned_cols=243 Identities=12% Similarity=0.147 Sum_probs=149.8
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhH-HHH----------HH---------------HHHHH
Q 000236 1556 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-LNI----------WV---------------AYFNL 1609 (1810)
Q Consensus 1556 ~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~-~~l----------W~---------------~yl~l 1609 (1810)
.++.+..+..-+++.+.+++++++|.++|+..++......|.++ .++ |+ ...-.
T Consensus 105 ~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~ 184 (652)
T KOG2376|consen 105 LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACI 184 (652)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHH
Confidence 35666667778899999999999999999998764443222221 111 21 11112
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCC--------C--------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHH--
Q 000236 1610 ENEYGNPPEEAVVKVFQRALQYCD--------P--------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV-- 1671 (1810)
Q Consensus 1610 e~~~g~~~~e~a~~vferAl~~~~--------~--------~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~-- 1671 (1810)
+...|+ ...|.++++.|+..+- . ..+..+++-++...|+.++|.++|...++..+.+...
T Consensus 185 ~i~~gk--y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~A 262 (652)
T KOG2376|consen 185 LIENGK--YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLA 262 (652)
T ss_pred HHhccc--HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHH
Confidence 234454 4889999999965441 1 1678888889999999999999999999877533211
Q ss_pred ---------------------------HHHHHHHHHHh---------------------cHHHHHHHHHHHHHhCCCCC-
Q 000236 1672 ---------------------------WLRRVQRLLKQ---------------------QQEGVQAVVQRALLSLPRHK- 1702 (1810)
Q Consensus 1672 ---------------------------w~~~a~~~~~~---------------------~~~~A~~ll~ralk~~p~~~- 1702 (1810)
...++++.... +.+.+++ ....+|...
T Consensus 263 v~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~----~~a~lp~~~p 338 (652)
T KOG2376|consen 263 VAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE----LSASLPGMSP 338 (652)
T ss_pred HHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHhCCccCc
Confidence 11112221111 1111111 112222221
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHH--------HHHhcCCCc
Q 000236 1703 --HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFE--------RAISLSLPP 1771 (1810)
Q Consensus 1703 --~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~-~~lw~~ya~~e~k~gd~e~ar~lfe--------ral~~~~~p 1771 (1810)
...+.+.-+...... .+..|..++......+|.+ ..+....+++.+.+|+++.|..++. ........|
T Consensus 339 ~~~~~~ll~~~t~~~~~-~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P 417 (652)
T KOG2376|consen 339 ESLFPILLQEATKVREK-KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP 417 (652)
T ss_pred hHHHHHHHHHHHHHHHH-HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh
Confidence 012222222222222 5677788888888888876 6688888999999999999999999 443322222
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000236 1772 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809 (1810)
Q Consensus 1772 ~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~~~~ 1809 (1810)
. +--....+..+.++...+.+++..|+.|....+
T Consensus 418 ~----~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 418 G----TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred h----HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 1 222222334456777889999999999998754
No 283
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.0013 Score=82.03 Aligned_cols=224 Identities=20% Similarity=0.150 Sum_probs=146.5
Q ss_pred CCHHHHHHHHHHHHh----------cCCHHHHHH--HHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000236 1559 NSSFVWIKYMAFMLS----------MADVEKARS--IAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1626 (1810)
Q Consensus 1559 ~~~~~W~~y~~~~~~----------~~~~d~Ar~--v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vfe 1626 (1810)
.+-..|-.++..... .|.+..||. +.+||.+. +. + ...-.+.+ ...+| -.|+|..+|+
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~-~~--e---~eakvAvL--AieLg--MlEeA~~lYr 824 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN-GE--E---DEAKVAVL--AIELG--MLEEALILYR 824 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC-Cc--c---hhhHHHHH--HHHHh--hHHHHHHHHH
Confidence 344677777766543 345555553 33444422 11 1 22334444 44556 4588999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHH----------HH
Q 000236 1627 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR----------AL 1695 (1810)
Q Consensus 1627 rAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~r----------al 1695 (1810)
+.-+ |-.+-.+|...|..++|.++-+.--+. .-...|++||.++... +.+.|.+.|++ +|
T Consensus 825 ~ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL 895 (1416)
T KOG3617|consen 825 QCKR-------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML 895 (1416)
T ss_pred HHHH-------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH
Confidence 8743 344555777888888887776554332 3567889999988888 99999998887 45
Q ss_pred HhCCC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------HhCCCCHHHHHHHHH
Q 000236 1696 LSLPR--------HKHIKFISQTAILEFKNGVADRGRSMFEGIL---------------------SEYPKRTDLWSIYLD 1746 (1810)
Q Consensus 1696 k~~p~--------~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al---------------------~~~P~~~~lw~~ya~ 1746 (1810)
+-+|. .....+|.-||+++...|+.+.|...|+.|- .....+..+...++.
T Consensus 896 ~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR 975 (1416)
T KOG3617|consen 896 KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLAR 975 (1416)
T ss_pred HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHH
Confidence 55554 1234799999999999999999999998882 223345567788899
Q ss_pred HHHHcCChHHHHHHHHHHHhcC-----CCchhH-HHHHHHHH------------HHHHHcCCHHHHHHHHHHH
Q 000236 1747 QEIRLGDVDLIRGLFERAISLS-----LPPKKM-KFLFKKYL------------EYEKSVGEEERIEYVKQKA 1801 (1810)
Q Consensus 1747 ~e~k~gd~e~ar~lferal~~~-----~~p~~~-~~lw~~yl------------~~E~~~G~~~~a~~v~~rA 1801 (1810)
+|...|++.+|...|-||-... +..+.+ ..+|+..+ .||..-|..+.|.-+|.||
T Consensus 976 ~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhh
Confidence 9999999999988887765410 111111 13555443 3455555888888888776
No 284
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0019 Score=78.60 Aligned_cols=195 Identities=13% Similarity=0.076 Sum_probs=131.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--------HHHH
Q 000236 1568 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--------KVHL 1639 (1810)
Q Consensus 1568 ~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~--------~i~~ 1639 (1810)
+....+..+++.|...|..++... .+ ..........+...+ .....+...+.|++..-.. ....
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~----it~~~n~aA~~~e~~--~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TD----ITYLNNIAAVYLERG--KYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hh----hHHHHHHHHHHHhcc--HHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 344445567777888888887543 11 223333444444555 2355555555555544221 2233
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCC--------------------------HHHHHHHHHHHHHh-cHHHHHHHHH
Q 000236 1640 ALLGLYERTEQNKLADELLYKMIKKFKHS--------------------------CKVWLRRVQRLLKQ-QQEGVQAVVQ 1692 (1810)
Q Consensus 1640 ~l~~~~~~~g~~~~A~~~~e~~lk~~~~~--------------------------~~~w~~~a~~~~~~-~~~~A~~ll~ 1692 (1810)
.+++.|...+.++.|...|++++..+... ..--..-+.-+++. ++..|...|.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34557777788999999999988766430 01111223444455 6788888888
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 000236 1693 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1772 (1810)
Q Consensus 1693 ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~ 1772 (1810)
+|++..|.+. .+|.+.|..+.++|.+.+|..-.+.+++.+|+....|+.-+..+....+++.|...|+.++. ..|.
T Consensus 383 eAIkr~P~Da--~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~ 458 (539)
T KOG0548|consen 383 EAIKRDPEDA--RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPS 458 (539)
T ss_pred HHHhcCCchh--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCch
Confidence 8888888773 78888888888888888888888888888888888888888888888888888888888888 5565
Q ss_pred hH
Q 000236 1773 KM 1774 (1810)
Q Consensus 1773 ~~ 1774 (1810)
+.
T Consensus 459 ~~ 460 (539)
T KOG0548|consen 459 NA 460 (539)
T ss_pred hH
Confidence 55
No 285
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.82 E-value=0.00045 Score=75.98 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000236 1671 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1748 (1810)
Q Consensus 1671 ~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e 1748 (1810)
.++.++..+... ++++|..+|+++++..|... ...+|..+|.++.+.|++++|...|++++...|.+...|..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444444444 55555555555554443321 1245555555555555555555555555555555555555555555
Q ss_pred HHcCC--------------hHHHHHHHHHHHhcCCCchh
Q 000236 1749 IRLGD--------------VDLIRGLFERAISLSLPPKK 1773 (1810)
Q Consensus 1749 ~k~gd--------------~e~ar~lferal~~~~~p~~ 1773 (1810)
...|+ +++|..+|++++. ..|.+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~~ 153 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPNN 153 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCchh
Confidence 54444 3455566666665 44443
No 286
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=4.4e-05 Score=68.94 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1709 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1709 ~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
..|..+++.|++++|+.+|+++++.+|.+.++|..++.++...|++++|+..|++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777777777777777777777776
No 287
>PRK11906 transcriptional regulator; Provisional
Probab=97.81 E-value=0.00081 Score=81.66 Aligned_cols=174 Identities=11% Similarity=0.090 Sum_probs=102.3
Q ss_pred HcCCCCH---HHH--HHHHHHH--HhcC---CHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCC-----CHH
Q 000236 1555 RSSPNSS---FVW--IKYMAFM--LSMA---DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-----PEE 1619 (1810)
Q Consensus 1555 ~~~P~~~---~~W--~~y~~~~--~~~~---~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~-----~~e 1619 (1810)
..-|.+. ..| -.|+.-. +..+ ..++|..+|+||+.+.+...++-....|.++..+...+..+ ...
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~ 321 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQ 321 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 3335666 777 4444443 2222 56778889999994333332455567788877776633211 245
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHh
Q 000236 1620 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1697 (1810)
Q Consensus 1620 ~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~ 1697 (1810)
+|....+||++..+.+ ..+..++.++...++++.|...|+++....|+...+|+.++-.+.-. +.++|.+.+++|++.
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 6666777777766654 45555555555566666666666666666666666666666666666 666666666666666
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000236 1698 LPRHKHIKFISQTAILEFKNGVADRGRSMFEG 1729 (1810)
Q Consensus 1698 ~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~ 1729 (1810)
.|......+...+..+|+..+ .+.|..+|-+
T Consensus 402 sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 402 EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 666544344444444444332 4444444443
No 288
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.79 E-value=0.00057 Score=71.70 Aligned_cols=100 Identities=10% Similarity=-0.110 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000236 1599 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1677 (1810)
Q Consensus 1599 ~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~ 1677 (1810)
.++.-.+|.....+.| +.+.|..+|+-++.+.|.. ..|+.++.++.+.|++++|...|.++....++++..+.+.+.
T Consensus 34 ~l~~lY~~A~~ly~~G--~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVK--EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3566778888888899 5699999999999999986 999999999999999999999999999999999999999999
Q ss_pred HHHHh-cHHHHHHHHHHHHHhCCC
Q 000236 1678 RLLKQ-QQEGVQAVVQRALLSLPR 1700 (1810)
Q Consensus 1678 ~~~~~-~~~~A~~ll~ralk~~p~ 1700 (1810)
+++.. +.+.|++.|+.|+.....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhcc
Confidence 99999 999999999999988743
No 289
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.79 E-value=0.00037 Score=83.21 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=77.3
Q ss_pred ChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHh--cHHHHHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHc
Q 000236 1650 QNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRH----KHIKFISQTAILEFKN 1717 (1810)
Q Consensus 1650 ~~~~A~~~~e~~lk~~~------~~~~~w~~~a~~~~~~--~~~~A~~ll~ralk~~p~~----~~~~~~~~~a~l~~~~ 1717 (1810)
++++|...|++++..|. ....++..+|.+|.+. ++++|.++|++|+..+... ....++.+.|.++.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 44455555555544331 1233445555556555 6888888888888765332 2246788899999999
Q ss_pred CCHHHHHHHHHHHHHhCCC----CH---HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 000236 1718 GVADRGRSMFEGILSEYPK----RT---DLWSIYLDQEIRLGDVDLIRGLFERAISL 1767 (1810)
Q Consensus 1718 g~~e~Ar~lfe~al~~~P~----~~---~lw~~ya~~e~k~gd~e~ar~lferal~~ 1767 (1810)
|++++|..+|+++....-. +. +.+...+-+++..||+-.|+..|++....
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999998875422 22 24555566777889999999999998873
No 290
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.79 E-value=0.00084 Score=85.97 Aligned_cols=111 Identities=10% Similarity=0.043 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000236 1684 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1763 (1810)
Q Consensus 1684 ~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lfer 1763 (1810)
...|.+..++++..........++..+|......|++++|...|++|+...| +...|..++.++...|+.++|...|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455555556555421222235666677766677888888888888888887 466777778888888888888888888
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000236 1764 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1800 (1810)
Q Consensus 1764 al~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~r 1800 (1810)
|+. +.|.....+|-.-+-| +-+.+.+.-.+.+
T Consensus 479 A~~--L~P~~pt~~~~~~~~f---~~~~~~~~~~~~~ 510 (517)
T PRK10153 479 AFN--LRPGENTLYWIENLVF---QTSVETVVPYLYR 510 (517)
T ss_pred HHh--cCCCCchHHHHHhccc---cccHHHHHHHHHh
Confidence 887 5444443334333333 3344444433333
No 291
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.79 E-value=0.0001 Score=67.45 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 000236 1669 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYP 1735 (1810)
Q Consensus 1669 ~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g-~~e~Ar~lfe~al~~~P 1735 (1810)
+.+|..+|..+.+. ++++|...|++|++.+|.+ ..+|..+|..++.+| ++++|+..|+++++.+|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN--AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH--HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34455555555555 5555555555555555443 345555555555555 45555555555555444
No 292
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0011 Score=77.75 Aligned_cols=160 Identities=15% Similarity=0.018 Sum_probs=135.0
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhh-------HHHHHHHHHHHHHHc
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE-------KLNIWVAYFNLENEY 1613 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e-------~~~lW~~yl~le~~~ 1613 (1810)
++.+++...--+.++.++.+.+..+--+.++.-..+.++|...|+++|++-|...+.- ++..|..-.+...+.
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 4466666666677788888888888878888888999999999999998777543322 247788888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHH
Q 000236 1614 GNPPEEAVVKVFQRALQYCDPK-----KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGV 1687 (1810)
Q Consensus 1614 g~~~~e~a~~vferAl~~~~~~-----~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A 1687 (1810)
|++ ..|.+.|..||+..|.+ .+|...+.+..+.|+..+|..-.+.+++..+.-.+.++..|++++.. ++++|
T Consensus 263 G~y--~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 263 GNY--RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred cch--hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 965 99999999999999874 78888999999999999999999999999988899999999999999 99999
Q ss_pred HHHHHHHHHhCCCCC
Q 000236 1688 QAVVQRALLSLPRHK 1702 (1810)
Q Consensus 1688 ~~ll~ralk~~p~~~ 1702 (1810)
.+.|++|++......
T Consensus 341 V~d~~~a~q~~~s~e 355 (486)
T KOG0550|consen 341 VEDYEKAMQLEKDCE 355 (486)
T ss_pred HHHHHHHHhhccccc
Confidence 999999998875543
No 293
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.77 E-value=0.00031 Score=76.97 Aligned_cols=116 Identities=9% Similarity=0.082 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHH
Q 000236 1651 NKLADELLYKMIKKFKH--SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSM 1726 (1810)
Q Consensus 1651 ~~~A~~~~e~~lk~~~~--~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~l~~~~g~~e~Ar~l 1726 (1810)
+..+...+.+.++..+. ....|+.++..+..+ ++++|...|++|+...|.+. ...+|..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55566666555544432 366788888888888 88888888888888776542 235788888888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH-------HcCChHHHHHHHHHHHh
Q 000236 1727 FEGILSEYPKRTDLWSIYLDQEI-------RLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1727 fe~al~~~P~~~~lw~~ya~~e~-------k~gd~e~ar~lferal~ 1766 (1810)
|++++...|.....|...+.++. ..|+++.|...|++++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 88888888888888888888877 56666666666666654
No 294
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=97.77 E-value=5.7e-05 Score=101.16 Aligned_cols=72 Identities=19% Similarity=0.363 Sum_probs=63.5
Q ss_pred CCCCCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCcccc-----------cCcccCcCCCCEEEEEEEEeeCCCCeE
Q 000236 634 IHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQR-----------ADLSKTYYVGQSVRSNILDVNSETGRI 701 (1810)
Q Consensus 634 ~~~G~~~~G~V~~i~~~G~fV~f~~-gv~Glv~~s~ls~~~~-----------~~~~~~~~~Gq~V~~~V~~vd~~~~rl 701 (1810)
-++|+.+.|.|++|++||+||++.+ ++.||+|.+++++++. ......|++||.|+|+|.++|..++++
T Consensus 625 ~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~~~I 704 (709)
T TIGR02063 625 EKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDTGKI 704 (709)
T ss_pred ccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEecccCeE
Confidence 3579999999999999999999998 8999999999986532 233467999999999999999999999
Q ss_pred EEee
Q 000236 702 TLSL 705 (1810)
Q Consensus 702 ~lSl 705 (1810)
.+++
T Consensus 705 ~~~l 708 (709)
T TIGR02063 705 DFEL 708 (709)
T ss_pred EEEE
Confidence 9986
No 295
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=97.76 E-value=6.5e-05 Score=99.16 Aligned_cols=74 Identities=31% Similarity=0.595 Sum_probs=64.4
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccc-----------cCcccccCCCCEEEEEEEEEecCCCe
Q 000236 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEKRR 1408 (1810)
Q Consensus 1340 ~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~-----------~~~~~~~~~G~~V~~~I~~id~~~~r 1408 (1810)
.-++|++++|.|++++++|+||+|.+.+++|++|++++.+++. ++....|++||.|+++|.++|.++++
T Consensus 569 ~~~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~ 648 (654)
T TIGR00358 569 LDKVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRS 648 (654)
T ss_pred hhCCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCe
Confidence 3467999999999999999999998558999999999987641 22346799999999999999999999
Q ss_pred eEEee
Q 000236 1409 ISLGM 1413 (1810)
Q Consensus 1409 i~lsl 1413 (1810)
|.+++
T Consensus 649 I~f~l 653 (654)
T TIGR00358 649 IIFEL 653 (654)
T ss_pred EEEEE
Confidence 99875
No 296
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=97.76 E-value=7.8e-05 Score=71.96 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=65.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEe--------CCCcEEEEEcccCCCcccC--CccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000236 1251 LSPNMIVQGYVKNVTSKGCFIML--------SRKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1320 (1810)
Q Consensus 1251 l~~G~~v~G~V~~v~~~G~fV~l--------~~~v~g~v~~s~ls~~~~~--~~~~~f~~G~~V~~~Vl~vd~~~~ri~l 1320 (1810)
.++|++|.|+|++++...++|++ .....|.+|++++...+.+ ++.+.|++||.|+|+|++++. .+.+.|
T Consensus 4 P~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~~-~~~~~L 82 (92)
T cd05791 4 PKVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLGD-ASSYYL 82 (92)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcCC-CCCcEE
Confidence 37899999999999999999999 7788999999999987776 688899999999999999984 567999
Q ss_pred EEecC
Q 000236 1321 TLKTS 1325 (1810)
Q Consensus 1321 Slk~~ 1325 (1810)
|++..
T Consensus 83 st~~~ 87 (92)
T cd05791 83 STAEN 87 (92)
T ss_pred EecCC
Confidence 98754
No 297
>PRK11906 transcriptional regulator; Provisional
Probab=97.75 E-value=0.00089 Score=81.32 Aligned_cols=112 Identities=10% Similarity=0.074 Sum_probs=83.4
Q ss_pred cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 000236 1683 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762 (1810)
Q Consensus 1683 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lfe 1762 (1810)
...+|.++-++|+...|.+. .+....|.+..-.++++.|..+|++|+..+|+..++|..++.++.-.|+.++|+..++
T Consensus 319 ~~~~a~~~A~rAveld~~Da--~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDG--KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46778888889999888774 5566666666666779999999999999999999999999999988999999999999
Q ss_pred HHHhcCCCchhHH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 000236 1763 RAISLSLPPKKMK-FLFKKYLEYEKSVGEEERIEYVKQ 1799 (1810)
Q Consensus 1763 ral~~~~~p~~~~-~lw~~yl~~E~~~G~~~~a~~v~~ 1799 (1810)
++++ +.|.+++ .+.+.|+++...+ ..+.+.++|.
T Consensus 397 ~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 397 KSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHhc--cCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 9998 6666543 3466666554433 2344444443
No 298
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.74 E-value=0.00052 Score=80.09 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHH-HHh-cHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 000236 1668 SCKVWLRRVQRL-LKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTDLW 1741 (1810)
Q Consensus 1668 ~~~~w~~~a~~~-~~~-~~~~A~~ll~ralk~~p~~~~-~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~---~~~lw 1741 (1810)
....|+..+..+ ++. ++++|...|+..++.+|.+.+ ..+++.+|++++..|+++.|+..|++++..+|+ ..++|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 457788888766 556 999999999999999999743 578999999999999999999999999999887 57889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 000236 1742 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1773 (1810)
Q Consensus 1742 ~~ya~~e~k~gd~e~ar~lferal~~~~~p~~ 1773 (1810)
...+.++...|+.+.|+.+|++++. .+|+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK--KYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 9999999999999999999999998 44443
No 299
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.73 E-value=0.00061 Score=83.45 Aligned_cols=125 Identities=16% Similarity=0.127 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000236 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1714 (1810)
Q Consensus 1636 ~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~ 1714 (1810)
.+-..++.++...++++.|.++|+++.+.+| .++..++..++.. +..+|.+++.++++..|.. ..++...|+++
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 3444566777778999999999999998764 5788899999988 8999999999999998877 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000236 1715 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765 (1810)
Q Consensus 1715 ~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal 1765 (1810)
.+.++++.|..+.++++...|.....|..++..|.+.|+++.|...+..+-
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999988776543
No 300
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional
Probab=97.73 E-value=0.00012 Score=81.22 Aligned_cols=77 Identities=25% Similarity=0.531 Sum_probs=65.0
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCccccc-----------CcccccCCCCEEEEEEEEEecCCC--
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKR-- 1407 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~-----------~~~~~~~~G~~V~~~I~~id~~~~-- 1407 (1810)
..+|+++.|+|+++.++|+||+++ .++|++|.+++.+++.. +....++.||.|+++|++++.+++
T Consensus 79 P~~GEVv~g~V~~v~~~Gi~V~lg--~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~ 156 (187)
T PRK08563 79 PELQEVVEGEVVEVVEFGAFVRIG--PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRP 156 (187)
T ss_pred ccCCCEEEEEEEEEEccEEEEEEe--CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCC
Confidence 347999999999999999999997 49999999999876432 345678999999999999997653
Q ss_pred ---eeEEeecccccC
Q 000236 1408 ---RISLGMKSSYFK 1419 (1810)
Q Consensus 1408 ---ri~lslk~~~~~ 1419 (1810)
+|.+|+|..+.+
T Consensus 157 ~~~~I~ls~~~~~LG 171 (187)
T PRK08563 157 RGSKIGLTMRQPGLG 171 (187)
T ss_pred CCCEEEEEecCCCCC
Confidence 899999987664
No 301
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=97.73 E-value=4.3e-05 Score=91.31 Aligned_cols=122 Identities=18% Similarity=0.366 Sum_probs=87.1
Q ss_pred ccccccCCCeEeeEEEeecCCCeEEEeccchhcch-----hccCCCccccCCCCCEEEEEEEEEecCe-EEEEECCCeEE
Q 000236 589 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS-----AQQLPSDASHIHPNSVVHGYVCNIIETG-CFVRFLGRLTG 662 (1810)
Q Consensus 589 ~~~~~k~G~~i~~vl~id~~~~~v~ls~K~~l~~~-----~~~~~~~~~~~~~G~~~~G~V~~i~~~G-~fV~f~~gv~G 662 (1810)
+...+++||.++..+..+.-.+....++|+.+... ++.+...|.+ +.|++++|+|.++.+.| +||.+ |++.|
T Consensus 80 ~d~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea 157 (341)
T TIGR01953 80 IDPDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEG 157 (341)
T ss_pred hccccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEE
Confidence 34578899999844433333444555666655222 1123333333 59999999999999988 69999 79999
Q ss_pred EeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCC--CeEEEeecccccCCCChhhHHHHHHHH
Q 000236 663 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSLKQSCCSSTDASFMQEHFLLE 725 (1810)
Q Consensus 663 lv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~--~rl~lSlk~~~~~~~~~~~~~~~~~~~ 725 (1810)
|+|.++.. |.+.|++||+++|.|++++... ..+.||.+. +.|+..+|..+
T Consensus 158 ~LP~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt~-------~~~v~~Lfe~E 209 (341)
T TIGR01953 158 ILPKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRTH-------PEFVKELLKLE 209 (341)
T ss_pred EecHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeCc-------HHHHHHHHHHh
Confidence 99999886 4566999999999999999553 578898764 34566666643
No 302
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.72 E-value=0.00088 Score=79.97 Aligned_cols=201 Identities=13% Similarity=0.149 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC---C-H-
Q 000236 1562 FVWIKYMAFMLSMADVEKARSIAERALQTIN-IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD---P-K- 1635 (1810)
Q Consensus 1562 ~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~-~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~---~-~- 1635 (1810)
.++..-+..+...+++++|.+.|.+|....- .....+....|..-..++... +.+.|...|++|+...- . .
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~---~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG---DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4455556777788999999999999986432 222233345566666665444 35899999999997642 1 1
Q ss_pred --HHHHHHHHHHHHh-CChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC---
Q 000236 1636 --KVHLALLGLYERT-EQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--- 1702 (1810)
Q Consensus 1636 --~i~~~l~~~~~~~-g~~~~A~~~~e~~lk~~~------~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~--- 1702 (1810)
..+..++.+|+.. +++++|.+.|++++..|. ....++..++.++.+. ++++|.++|++.....-...
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 7889999999999 999999999999999874 2256778999999999 99999999999987653321
Q ss_pred -hH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH--HHHHHHHHHHHcCC---hHHHHHHHHHHHh
Q 000236 1703 -HI-KFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTD--LWSIYLDQEIRLGD---VDLIRGLFERAIS 1766 (1810)
Q Consensus 1703 -~~-~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~---~~~--lw~~ya~~e~k~gd---~e~ar~lferal~ 1766 (1810)
.+ ..++..+.+++..||+-.|+..|++....+|. ..+ +...+++.. ..|| ++.+..-|+++..
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS-
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccCc
Confidence 12 35566667788899999999999999988774 333 333333333 4444 4556666665443
No 303
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00046 Score=81.71 Aligned_cols=140 Identities=13% Similarity=0.131 Sum_probs=105.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-c
Q 000236 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1683 (1810)
Q Consensus 1605 ~yl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~ 1683 (1810)
.-.+.+.+.+++ ..|..-|+||+...+.. ++-..++.... .. .-..++++++-++.+. .
T Consensus 213 e~Gn~~fK~gk~--~~A~~~Yerav~~l~~~-----------~~~~~ee~~~~-~~------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 213 ERGNVLFKEGKF--KLAKKRYERAVSFLEYR-----------RSFDEEEQKKA-EA------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred HhhhHHHhhchH--HHHHHHHHHHHHHhhcc-----------ccCCHHHHHHH-HH------HHHHHhhHHHHHHHhhhh
Confidence 357777777854 88888888887655421 11111111111 11 1234677888899999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHH
Q 000236 1684 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-DLIRGLFE 1762 (1810)
Q Consensus 1684 ~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~-e~ar~lfe 1762 (1810)
+.+|.+...++|...|.+ ++++++-|+.+...|+++.||..|+++++..|.|.++-..++.+-.+.... ++.+.+|.
T Consensus 273 ~~~Ai~~c~kvLe~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNN--VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 599999999999999999999999999999999999998888887765544 44588888
Q ss_pred HHHh
Q 000236 1763 RAIS 1766 (1810)
Q Consensus 1763 ral~ 1766 (1810)
+++.
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 8887
No 304
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.71 E-value=0.00031 Score=83.48 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=108.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHH
Q 000236 1570 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---KVHLALLGLYE 1646 (1810)
Q Consensus 1570 ~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~---~i~~~l~~~~~ 1646 (1810)
.+...|+++.|.+++.+. ...| .-...+.+++..+ +.+.|.+.++++-+..+.. .+..+|.+++.
T Consensus 111 i~~~~~~~~~AL~~l~~~-------~~lE---~~al~Vqi~L~~~--R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-------GSLE---LLALAVQILLKMN--RPDLAEKELKNMQQIDEDSILTQLAEAWVNLAT 178 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-------TCHH---HHHHHHHHHHHTT---HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcc-------Cccc---HHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 344567777776666543 1222 3334445566777 5588888888887776654 56666666666
Q ss_pred HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH-HHHH
Q 000236 1647 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA-DRGR 1724 (1810)
Q Consensus 1647 ~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~-e~Ar 1724 (1810)
-.+++++|..+|+++..+|+.++.++..++.+++.+ ++++|.++++.|+...|++ +.++.+.+-+..-.|+. +.+.
T Consensus 179 g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~--~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND--PDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH--HHHHHHHHHHHHHTT-TCHHHH
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHhCCChhHHH
Confidence 566788888888888888888888888888888888 8888888888888877765 57788888777777766 7777
Q ss_pred HHHHHHHHhCCCCHH
Q 000236 1725 SMFEGILSEYPKRTD 1739 (1810)
Q Consensus 1725 ~lfe~al~~~P~~~~ 1739 (1810)
.+++++-..+|..+-
T Consensus 257 ~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 257 RYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHCHHHTTTSHH
T ss_pred HHHHHHHHhCCCChH
Confidence 788887778887543
No 305
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.70 E-value=0.011 Score=75.78 Aligned_cols=219 Identities=15% Similarity=0.148 Sum_probs=155.3
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1620 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~ 1620 (1810)
+.+..|-+..+++++.+|+...+-.--+-.+.++|..++|..+.+ ++...+..++ .....+-+++...+ ..++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~D~----~tLq~l~~~y~d~~--~~d~ 95 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGTDD----LTLQFLQNVYRDLG--KLDE 95 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCCch----HHHHHHHHHHHHHh--hhhH
Confidence 347788889999999999998888888888899999999996664 5545454431 23444556667777 4599
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--cH---------HHHHH
Q 000236 1621 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQ---------EGVQA 1689 (1810)
Q Consensus 1621 a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~--~~---------~~A~~ 1689 (1810)
|..+|+||++.+|..+...+|-..|.+-+.|.+-.++--++-+.+|..+-.+-.....+++. .. .-|+.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99999999999999888888888888888888777777777778876654444444445444 32 23555
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1690 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS-EY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1690 ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~-~~-P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
.++..++.-..-....=..-|-..+..+|.+++|...+..-+. .. +-+..+-+.-.+++...+.+.+--++..|++.
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 6666665441111222233344445567889999999965443 33 44566677778889999999999898899888
No 306
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.69 E-value=9.6e-05 Score=70.62 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 000236 1683 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762 (1810)
Q Consensus 1683 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lfe 1762 (1810)
+++.|..+|+++++..|.+.....|..+|..+++.|++++|..++++ ....|.+...+..++..+.+.|++++|+..|+
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45555555555555555321234555555566666666666666555 44555555555555555556666666665555
Q ss_pred HH
Q 000236 1763 RA 1764 (1810)
Q Consensus 1763 ra 1764 (1810)
++
T Consensus 83 ~~ 84 (84)
T PF12895_consen 83 KA 84 (84)
T ss_dssp HH
T ss_pred cC
Confidence 53
No 307
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.69 E-value=0.038 Score=62.21 Aligned_cols=216 Identities=16% Similarity=0.122 Sum_probs=139.9
Q ss_pred CCcHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000236 1544 PRTPDEFERLVRSSPN--SSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEA 1620 (1810)
Q Consensus 1544 ~~a~~~fer~l~~~P~--~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~-~~~~~e~e~~~lW~~yl~le~~~g~~~~e~ 1620 (1810)
..+...+...+...+. ....+...+..+...+.+..+...+..++.. .. ......|..+.......+ ..+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~ 113 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL----PNLAEALLNLGLLLEALG--KYEE 113 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc----cchHHHHHHHHHHHHHHh--hHHH
Confidence 3344455555554454 3566677777777777888888877777752 11 112345666666666666 3477
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHH-HHHHhCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHh-cHHHHHHHHHHH
Q 000236 1621 VVKVFQRALQYCDPK-KVHLALLG-LYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1694 (1810)
Q Consensus 1621 a~~vferAl~~~~~~-~i~~~l~~-~~~~~g~~~~A~~~~e~~lk~~~---~~~~~w~~~a~~~~~~-~~~~A~~ll~ra 1694 (1810)
+...++.++...+.. ..+..... ++...++++.|...|++++...+ .....+..++..+... +++.|...+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 114 ALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 777777777766554 33333344 67777888888888888766433 2344455555555555 778888888888
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1695 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1695 lk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
+...+.. ....+..++..+...++++.|...+..++...|.....|......+...+..+.+...+.+++.
T Consensus 194 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 194 LKLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HhhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777662 1366777777777777788888888888877777555555555555566667777777777777
No 308
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.68 E-value=0.0015 Score=71.76 Aligned_cols=115 Identities=9% Similarity=0.030 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHH
Q 000236 1600 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR 1675 (1810)
Q Consensus 1600 ~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~----~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~ 1675 (1810)
...+..++..+...+ +.++|...|++|++..+. ..+|..++.++.+.|++++|...|++++...|.....|..+
T Consensus 35 a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADG--EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 344555555555566 346666666666655432 14666666666666666666666666666666666666666
Q ss_pred HHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000236 1676 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1738 (1810)
Q Consensus 1676 a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~ 1738 (1810)
+..+... +...+...++.|+. .+++|..+|++++...|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~----------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA----------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH----------------------HHHHHHHHHHHHHhhCchhH
Confidence 6666655 55444444444331 15677788888888888763
No 309
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.68 E-value=0.00049 Score=75.40 Aligned_cols=98 Identities=10% Similarity=-0.033 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHh-cHHHHHHHH
Q 000236 1619 EAVVKVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVV 1691 (1810)
Q Consensus 1619 e~a~~vferAl~~~~~~---~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~---~~~w~~~a~~~~~~-~~~~A~~ll 1691 (1810)
..+...+.+.++..+.. ..|..++..+...|++++|...|++++...++. ..+|..++.++... ++++|...|
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34455555554444432 677888888888888888888888888776543 34788888888888 888888888
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000236 1692 QRALLSLPRHKHIKFISQTAILEFKNG 1718 (1810)
Q Consensus 1692 ~ralk~~p~~~~~~~~~~~a~l~~~~g 1718 (1810)
++|+...|.. ...|..++.++...|
T Consensus 96 ~~Al~~~~~~--~~~~~~la~i~~~~~ 120 (168)
T CHL00033 96 FQALERNPFL--PQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHhCcCc--HHHHHHHHHHHHHhh
Confidence 8888887766 366777777777444
No 310
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.68 E-value=0.00016 Score=65.32 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=40.9
Q ss_pred HHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000236 1674 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1737 (1810)
Q Consensus 1674 ~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~ 1737 (1810)
.+|..+++. ++++|..+|+++++..|.+ ..+|..+|.+++.+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN--PEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345566666 6777777777777766664 4677777777777777777777777777777665
No 311
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=97.68 E-value=7.2e-05 Score=89.47 Aligned_cols=108 Identities=17% Similarity=0.346 Sum_probs=78.7
Q ss_pred CCcccCCEEEEEEEEEeCCe-EEEEEcchhhc----c-hhhHHhhhhhcCCCcEEEEEEEEEeece-EEEEEcCCeEEEe
Q 000236 416 KKFKVGAELVFRVLGVKSKR-ITVTHKKTLVK----S-KLAILSSYAEATDRLITHGWITKIEKHG-CFVRFYNGVQGFA 488 (1810)
Q Consensus 416 ~~~~vG~~v~~rVl~v~~~~-i~ls~k~~l~~----~-~~~~~~~~~~~~~g~~~~g~V~~i~~~G-~~V~~~~~v~g~v 488 (1810)
..+++|+.++..+..-+-+| ..-+.|+.+.. . +...+..|.+ +.|+++.|+|.++.+.| +||++ +++.||+
T Consensus 82 ~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea~L 159 (341)
T TIGR01953 82 PDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEGIL 159 (341)
T ss_pred cccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEEEe
Confidence 36999999998774333333 33344443311 1 1123344543 58999999999999988 69999 7999999
Q ss_pred eccccCCCCCCCCCcCccCCCEEEEEEEEEeCCC--CeEEEEEee
Q 000236 489 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS--RRINLSFMM 531 (1810)
Q Consensus 489 p~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~--~~l~lS~k~ 531 (1810)
|.+++. |.+.|++|+.++|.|++++... ..+.||.+.
T Consensus 160 P~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt~ 198 (341)
T TIGR01953 160 PKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRTH 198 (341)
T ss_pred cHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeCc
Confidence 999996 4456999999999999999553 579999864
No 312
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.0027 Score=72.57 Aligned_cols=218 Identities=16% Similarity=0.097 Sum_probs=134.7
Q ss_pred HHHHhccCCCCcHHHHHHHHHcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHH
Q 000236 1535 EERLLEKDAPRTPDEFERLVRSS---PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN 1611 (1810)
Q Consensus 1535 e~~~~~~~~~~a~~~fer~l~~~---P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~ 1611 (1810)
|+-+...+...|+...+-.+... -++..+|+.+..| ..|++++|...|+-+....... ..+|..++-...
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~f--hLgdY~~Al~~Y~~~~~~~~~~-----~el~vnLAcc~F 102 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF--HLGDYEEALNVYTFLMNKDDAP-----AELGVNLACCKF 102 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH--hhccHHHHHHHHHHHhccCCCC-----cccchhHHHHHH
Confidence 33444566888888877766432 2478899887655 6789999999998877643332 235554333333
Q ss_pred HcCCCCHHHHHHHHHHH--------------HhcCCCH-------------HHHHHHHHHHHHhCChHHHHHHHHHHHHh
Q 000236 1612 EYGNPPEEAVVKVFQRA--------------LQYCDPK-------------KVHLALLGLYERTEQNKLADELLYKMIKK 1664 (1810)
Q Consensus 1612 ~~g~~~~e~a~~vferA--------------l~~~~~~-------------~i~~~l~~~~~~~g~~~~A~~~~e~~lk~ 1664 (1810)
-+|.| .+|..+.++| .+.++.. +-.+.++.+....-.|++|.++|.+.+..
T Consensus 103 yLg~Y--~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 103 YLGQY--IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHH--HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33322 4555554444 3333321 11223344444455689999999999987
Q ss_pred cCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH--cCC----------------HHHHHH
Q 000236 1665 FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGV----------------ADRGRS 1725 (1810)
Q Consensus 1665 ~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~--~g~----------------~e~Ar~ 1725 (1810)
.|.-..+-..+|.+|.+. .++-+.+++.-.|..+|.+. -+....|-..++ .|+ ++.+..
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt--iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST--IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH--HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 776666666778888888 88889999999999998874 222222222221 121 222322
Q ss_pred HH----------HHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000236 1726 MF----------EGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFER 1763 (1810)
Q Consensus 1726 lf----------e~al~~~P~~----~~lw~~ya~~e~k~gd~e~ar~lfer 1763 (1810)
+. |.||+..|.- +++...++-.+.+++|.++|.++...
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh
Confidence 22 3345555542 35677777788899999999998765
No 313
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.62 E-value=0.00016 Score=66.19 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 000236 1704 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAIS 1766 (1810)
Q Consensus 1704 ~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~g-d~e~ar~lferal~ 1766 (1810)
..+|..+|..++..|++++|...|+++++.+|++..+|..++.++.+.| ++++|+..|++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999 79999999999998
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.0071 Score=75.76 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000236 1776 FLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807 (1810)
Q Consensus 1776 ~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~~ 1807 (1810)
.+..+..+|-..+.++++|..++-.|.+|-.+
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~A 1112 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGA 1112 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 68999999998899999999888888887655
No 315
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.62 E-value=0.00017 Score=65.63 Aligned_cols=51 Identities=22% Similarity=0.323 Sum_probs=27.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1716 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1716 ~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
+.|++++|..+|++++..+|++.++|..++.++++.|++++|+.+|++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555555555
No 316
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.60 E-value=0.00017 Score=65.63 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=58.9
Q ss_pred HHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000236 1680 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1746 (1810)
Q Consensus 1680 ~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~ 1746 (1810)
++. ++++|.++|++++...|.+ ..+++.+|.++++.|++++|+.+|++++..+|++..+|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456 8999999999999999997 5899999999999999999999999999999999888877665
No 317
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.60 E-value=0.0001 Score=82.66 Aligned_cols=91 Identities=19% Similarity=0.328 Sum_probs=43.5
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCC
Q 000236 1691 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI-RLGDVDLIRGLFERAISLSL 1769 (1810)
Q Consensus 1691 l~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~-k~gd~e~ar~lferal~~~~ 1769 (1810)
|.|+...+|+. +.+|..|+....+.+.+.+...+|..+++..|.+.++|..-+.++. -.++++.+|++|.++++ +
T Consensus 96 ~~R~tnkff~D--~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR--~ 171 (435)
T COG5191 96 LYRSTNKFFND--PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR--M 171 (435)
T ss_pred eehhhhcCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc--c
Confidence 34444444443 3455555554444445555555555555555555555544444432 34455555555555554 4
Q ss_pred CchhHHHHHHHHHHHHH
Q 000236 1770 PPKKMKFLFKKYLEYEK 1786 (1810)
Q Consensus 1770 ~p~~~~~lw~~yl~~E~ 1786 (1810)
.++.+ .+|..|..||-
T Consensus 172 N~~~p-~iw~eyfr~El 187 (435)
T COG5191 172 NSRSP-RIWIEYFRMEL 187 (435)
T ss_pred CCCCc-hHHHHHHHHHH
Confidence 44444 35555554443
No 318
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=97.59 E-value=5.7e-05 Score=90.22 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=70.4
Q ss_pred hcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeeccccCCCCCCCCCcCccCCCEEEEEEEEEeCCCCeEEEEEeeCCC
Q 000236 457 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 534 (1810)
Q Consensus 457 ~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~~ 534 (1810)
++..|-++.++|+.+.++|+||+|+++..|++|.|+++..++.+|++.+.+||.+.++.++.|+..+...+|.+..+.
T Consensus 665 ~l~~g~vy~~tIt~~rd~G~~V~l~p~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~~g~~~ls~ralLp~ 742 (760)
T KOG1067|consen 665 DLEFGGVYTATITEIRDTGVMVELYPMQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDPRGGIMLSSRALLPD 742 (760)
T ss_pred ceEeeeEEEEEEeeecccceEEEecCCchhhccchhcccccccChHHHHhhcceeEEEEEeecCccceeehhhhhcCC
Confidence 455688899999999999999999999999999999999999999999999999999999999988888777665443
No 319
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=97.58 E-value=0.00011 Score=88.40 Aligned_cols=106 Identities=16% Similarity=0.296 Sum_probs=77.3
Q ss_pred CcccCCEEEEEEEEEe-CCeEEEEEcchhhcchh-----hHHhhhhhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeec
Q 000236 417 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 490 (1810)
Q Consensus 417 ~~~vG~~v~~rVl~v~-~~~i~ls~k~~l~~~~~-----~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~ 490 (1810)
..++|+.++..+...+ .+....+.|+.+...-. ..+..|.+ +.|+++.|+|.++..+|+||++ +++.||+|.
T Consensus 86 ~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~-k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP~ 163 (362)
T PRK12327 86 AYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSE-REGDIVTGVVQRRDNRFVYVNL-GKIEAVLPP 163 (362)
T ss_pred cccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEEEEEEeCCcEEEEe-CCeEEEecH
Confidence 5889999998775442 23334444444443211 12233322 6899999999999999999999 679999999
Q ss_pred cccCCCCCCCCCcCccCCCEEEEEEEEEeCCCC--eEEEEEe
Q 000236 491 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFM 530 (1810)
Q Consensus 491 s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~--~l~lS~k 530 (1810)
+++. |.+.|++|+.++|.|++++...+ .+.||..
T Consensus 164 ~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSRt 199 (362)
T PRK12327 164 AEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSRT 199 (362)
T ss_pred HHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEeC
Confidence 8884 35679999999999999996554 5788764
No 320
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.57 E-value=0.0044 Score=79.51 Aligned_cols=155 Identities=9% Similarity=0.002 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH--hc---CCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHH-cCCC---C
Q 000236 1547 PDEFERLVRSSPNSSFVWIKYMAFML--SM---ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE-YGNP---P 1617 (1810)
Q Consensus 1547 ~~~fer~l~~~P~~~~~W~~y~~~~~--~~---~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~-~g~~---~ 1617 (1810)
....+++...-|.+..+|-.|+.... .. .+.++|+++|++|++..|. +-....++++..+... +... .
T Consensus 323 ~~e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~---~a~a~A~la~~~~~~~~~~~~~~~~ 399 (517)
T PRK10153 323 ERMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD---FTYAQAEKALADIVRHSQQPLDEKQ 399 (517)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHhcCCccHHH
Confidence 44445565667888889988877753 22 3488999999999988874 3233333333332111 1100 0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Q 000236 1618 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1696 (1810)
Q Consensus 1618 ~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk 1696 (1810)
.+.+.+.+++|+... ..+..+.+|..++..+... ++++|...|++|+.
T Consensus 400 l~~a~~~~~~a~al~-------------------------------~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~ 448 (517)
T PRK10153 400 LAALSTELDNIVALP-------------------------------ELNVLPRIYEILAVQALVKGKTDEAYQAINKAID 448 (517)
T ss_pred HHHHHHHHHHhhhcc-------------------------------cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 122233333332221 1233344455554444444 55666666666665
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000236 1697 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1738 (1810)
Q Consensus 1697 ~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~ 1738 (1810)
..|. ...|..+|.++...|++++|...|++|++.+|..+
T Consensus 449 L~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 449 LEMS---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 5552 24555666666666666666666666666655543
No 321
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.57 E-value=8.1e-05 Score=83.39 Aligned_cols=155 Identities=18% Similarity=0.248 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHH
Q 000236 1576 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1655 (1810)
Q Consensus 1576 ~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~ 1655 (1810)
.+-+.|..||.-|.. + .-+++=++.|++.|..+... .|.. .+|....-. +.+. ...-.++..
T Consensus 32 ~IvktRr~fE~rL~r-r----~~klnDf~~YI~yE~nlekl---RaKR-~Kr~~v~~K--------~s~s-D~sipqk~~ 93 (435)
T COG5191 32 RIVKTRRKFELRLQR-R----EKKLNDFMRYIKYECNLEKL---RAKR-VKRKKVGKK--------ASFS-DMSIPQKKI 93 (435)
T ss_pred HHHHHHHHHHHHHhc-c----cchHHHHHHHHHHHhhHHHH---HHHH-HHHHHhccc--------ccch-hccccceee
Confidence 345667777766632 1 12356788888887755421 1111 111111100 0000 000111222
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 000236 1656 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSE 1733 (1810)
Q Consensus 1656 ~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~-~~g~~e~Ar~lfe~al~~ 1733 (1810)
=.|.|+..+|++++++|..|+.+..+. .+.+...+|..||+..|.+ +.+|...+.+++ ..++.+.+|++|.++++.
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n--vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN--VDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 345666778889999999999988888 9999999999999999998 589999888776 678999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 000236 1734 YPKRTDLWSIYLDQEIR 1750 (1810)
Q Consensus 1734 ~P~~~~lw~~ya~~e~k 1750 (1810)
+|.++.+|..|..+|..
T Consensus 172 N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 172 NSRSPRIWIEYFRMELM 188 (435)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 99999999999998863
No 322
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.56 E-value=0.061 Score=60.49 Aligned_cols=224 Identities=18% Similarity=0.134 Sum_probs=162.4
Q ss_pred cCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh--cCCC-HHHHHHHHHHHHHhCC
Q 000236 1574 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ--YCDP-KKVHLALLGLYERTEQ 1650 (1810)
Q Consensus 1574 ~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~--~~~~-~~i~~~l~~~~~~~g~ 1650 (1810)
...+..+...+..++...+.. .....+..........+ ....+...+..++. ..+. ...|..++..+...++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (291)
T COG0457 36 LGELAEALELLEEALELLPNS---DLAGLLLLLALALLKLG--RLEEALELLEKALELELLPNLAEALLNLGLLLEALGK 110 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc---cchHHHHHHHHHHHHcc--cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh
Confidence 355666667777777554432 01234555566666666 45888888888886 3333 4888888888889999
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHh-cHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000236 1651 NKLADELLYKMIKKFKHSCKVWLRRVQ-RLLKQ-QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVADRGRSMF 1727 (1810)
Q Consensus 1651 ~~~A~~~~e~~lk~~~~~~~~w~~~a~-~~~~~-~~~~A~~ll~ralk~~p~-~~~~~~~~~~a~l~~~~g~~e~Ar~lf 1727 (1810)
+..+...+..+....+.....+..+.. .+... +++.|...|++++...|. ......+...+..+...++++.|...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 999999999999877666555555555 67777 999999999999886552 233456666666677888999999999
Q ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000236 1728 EGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805 (1810)
Q Consensus 1728 e~al~~~P~-~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v 1805 (1810)
.+++...|. ....+......+...++.+.|...+..++. ..+.....++.....+. ..+..+.+...+.++++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 191 EKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLL-ELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhC
Confidence 999999998 688888888999899999999999999998 44442322333333444 6778888888888887653
No 323
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0024 Score=73.02 Aligned_cols=169 Identities=21% Similarity=0.166 Sum_probs=122.3
Q ss_pred HhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCC
Q 000236 1572 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQ 1650 (1810)
Q Consensus 1572 ~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~~~~~~g~ 1650 (1810)
+...++.-|+.+++-.+ ...++|...+++|+++.+|++ | +.++|...|+-+.+..+. .++|..++-.+.-.|.
T Consensus 33 ls~rDytGAislLefk~--~~~~EEE~~~~lWia~C~fhL--g--dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKL--NLDREEEDSLQLWIAHCYFHL--G--DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HhcccchhHHHHHHHhh--ccchhhhHHHHHHHHHHHHhh--c--cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence 45578888999988877 233344447899999999854 6 449999999999875544 4888888877777888
Q ss_pred hHHHHHHHHHHHH-------------hcCCCHHHH--------------HHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC
Q 000236 1651 NKLADELLYKMIK-------------KFKHSCKVW--------------LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1702 (1810)
Q Consensus 1651 ~~~A~~~~e~~lk-------------~~~~~~~~w--------------~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~ 1702 (1810)
|.+|..+.+++-+ ++ ++.+-| +.+|...... .+++|.++|.|.|.-.|..
T Consensus 107 Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey- 184 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY- 184 (557)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHh-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh-
Confidence 8888777665432 11 222222 3344444444 7899999999999888766
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000236 1703 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1749 (1810)
Q Consensus 1703 ~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~ 1749 (1810)
..+-...|..+++..-++-+.+++.-.|+..|+++-+.+..+--.+
T Consensus 185 -~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 185 -IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF 230 (557)
T ss_pred -hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 3555666777888888999999999999999998876655554444
No 324
>PRK11642 exoribonuclease R; Provisional
Probab=97.53 E-value=0.00021 Score=95.50 Aligned_cols=72 Identities=24% Similarity=0.349 Sum_probs=63.0
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCC-eEEEeeCCccCcccc-c----------CcccCcCCCCEEEEEEEEeeCCCCeEE
Q 000236 635 HPNSVVHGYVCNIIETGCFVRFLGR-LTGFAPRSKAVDGQR-A----------DLSKTYYVGQSVRSNILDVNSETGRIT 702 (1810)
Q Consensus 635 ~~G~~~~G~V~~i~~~G~fV~f~~g-v~Glv~~s~ls~~~~-~----------~~~~~~~~Gq~V~~~V~~vd~~~~rl~ 702 (1810)
++|+.+.|.|++++++|+||++.++ +.||+|.+++.+++. - .....|++||+|+|+|.++|.+++++.
T Consensus 642 ~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rkI~ 721 (813)
T PRK11642 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERKID 721 (813)
T ss_pred cCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCeEE
Confidence 6899999999999999999999875 999999999986521 1 234569999999999999999999999
Q ss_pred Eeec
Q 000236 703 LSLK 706 (1810)
Q Consensus 703 lSlk 706 (1810)
|++-
T Consensus 722 f~l~ 725 (813)
T PRK11642 722 FSLI 725 (813)
T ss_pred EEEe
Confidence 9984
No 325
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.52 E-value=0.0025 Score=64.82 Aligned_cols=97 Identities=16% Similarity=0.102 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 000236 1670 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTDLWSIY 1744 (1810)
Q Consensus 1670 ~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~-~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~---~~~lw~~y 1744 (1810)
.+++.++..+-.. +.++|..+|++|+..-.. .....+++.++..+...|++++|..+|+.++..+|+ +..++..|
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 4667777777777 889999999999885433 223478999999999999999999999999999998 77888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 000236 1745 LDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1745 a~~e~k~gd~e~ar~lferal~ 1766 (1810)
+..+...|+.++|...+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988887
No 326
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]
Probab=97.51 E-value=0.00026 Score=74.90 Aligned_cols=74 Identities=24% Similarity=0.469 Sum_probs=62.0
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccC-C----------ccccCCCCcEEEEEEEEEeCCC-----C
Q 000236 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-S----------PEKEFPIGKLVAGRVLSVEPLS-----K 1316 (1810)
Q Consensus 1253 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~-~----------~~~~f~~G~~V~~~Vl~vd~~~-----~ 1316 (1810)
.|++|.|.|+++.++|+||.+| -.+||+|.+.+.|+|+. + -+..|.+|+.|+++|+.++... .
T Consensus 81 ~gEVV~GeVv~~~~~G~fV~ig-p~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~~~~ 159 (183)
T COG1095 81 RGEVVEGEVVEVVEFGAFVRIG-PLDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRPRES 159 (183)
T ss_pred cccEEEEEEEEEeecceEEEec-cccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCccccc
Confidence 6899999999999999999999 69999999999998531 1 2236889999999999887654 5
Q ss_pred EEEEEEecCcc
Q 000236 1317 RVEVTLKTSDS 1327 (1810)
Q Consensus 1317 ri~lSlk~~~~ 1327 (1810)
+|.+++|+.-.
T Consensus 160 ~I~lTmrq~~L 170 (183)
T COG1095 160 KIGLTMRQPGL 170 (183)
T ss_pred eEEEEeccccC
Confidence 88999988654
No 327
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.50 E-value=0.00035 Score=66.73 Aligned_cols=80 Identities=15% Similarity=0.048 Sum_probs=60.5
Q ss_pred hCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000236 1648 TEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1724 (1810)
Q Consensus 1648 ~g~~~~A~~~~e~~lk~~~~--~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar 1724 (1810)
.+++++|...|++++...|. ....|+.+|.+++++ ++++|..++++ ++..|.+ ......+|+.++++|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--PDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--HHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHHHhCCHHHHH
Confidence 57788888888888887764 466788888888888 88888888888 5555433 466667788888888888888
Q ss_pred HHHHHH
Q 000236 1725 SMFEGI 1730 (1810)
Q Consensus 1725 ~lfe~a 1730 (1810)
..|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888875
No 328
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.48 E-value=0.0017 Score=77.13 Aligned_cols=136 Identities=12% Similarity=0.102 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHH--HHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000236 1635 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV--WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1711 (1810)
Q Consensus 1635 ~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~--w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a 1711 (1810)
.+.......+|.+.++++.|...++.+-+...++.-+ ...+..+..-. ++++|..+|+.....++.. +.++...|
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t--~~~lng~A 208 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST--PKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S--HHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC--HHHHHHHH
Confidence 4666777889999999999999998887654333221 11222222233 6899999999988777655 57888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCchhH
Q 000236 1712 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-DLIRGLFERAISLSLPPKKM 1774 (1810)
Q Consensus 1712 ~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~-e~ar~lferal~~~~~p~~~ 1774 (1810)
..++.+|++++|..+++.++..+|++++++...+-+....|+. +.+...+.++-. ..|..+
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 9999999999999999999999999999999988888888877 667777777665 444443
No 329
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=97.48 E-value=0.00031 Score=63.64 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=66.1
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEe-ccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEee
Q 000236 1340 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH-VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1413 (1810)
Q Consensus 1340 ~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~-~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lsl 1413 (1810)
-.++|+.+. .|+.+.+.|++|.|-+-+++|++. .+|++..++..+++.+ +|..+.++|+.+|+++|-|.||.
T Consensus 13 ~P~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 13 FPNINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred cCCCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 356899998 788999999999998778999999 9999999999999999 99999999999999999998873
No 330
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=97.47 E-value=0.00032 Score=92.73 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=63.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEeC-CCcEEEEEcccCCCcc-c----------CCccccCCCCcEEEEEEEEEeCCCCEEE
Q 000236 1252 SPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGY-V----------ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1319 (1810)
Q Consensus 1252 ~~G~~v~G~V~~v~~~G~fV~l~-~~v~g~v~~s~ls~~~-~----------~~~~~~f~~G~~V~~~Vl~vd~~~~ri~ 1319 (1810)
++|+++.|+|++++++|+||+|+ .+++|+||++++.|++ . .+....|++||.|+++|+++|.++++|.
T Consensus 571 ~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~I~ 650 (654)
T TIGR00358 571 KVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRSII 650 (654)
T ss_pred CCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCeEE
Confidence 57999999999999999999998 7899999999999864 1 2344679999999999999999999999
Q ss_pred EEE
Q 000236 1320 VTL 1322 (1810)
Q Consensus 1320 lSl 1322 (1810)
+++
T Consensus 651 f~l 653 (654)
T TIGR00358 651 FEL 653 (654)
T ss_pred EEE
Confidence 886
No 331
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.45 E-value=0.01 Score=67.13 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChH-HHHHHHHH
Q 000236 1638 HLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTAI 1712 (1810)
Q Consensus 1638 ~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~---~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~-~~~~~~a~ 1712 (1810)
++..+..+.+.|++.+|...|+++...+|.+ ..+++.++..+.+. +++.|...|++.++.+|.+.+. .++...|.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 3444555677888888888888888887643 67777888888888 8888888888888888887543 23343343
Q ss_pred HHHH-----------cCCHHHHHHHHHHHHHhCCCCHH----------HHHH-------HHHHHHHcCChHHHHHHHHHH
Q 000236 1713 LEFK-----------NGVADRGRSMFEGILSEYPKRTD----------LWSI-------YLDQEIRLGDVDLIRGLFERA 1764 (1810)
Q Consensus 1713 l~~~-----------~g~~e~Ar~lfe~al~~~P~~~~----------lw~~-------ya~~e~k~gd~e~ar~lfera 1764 (1810)
..+. .+...+|...|+.++..+|++.. +... -+.++.+.|.+..|..-|+.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3322 23356888888888888888632 2222 245566789999999999999
Q ss_pred HhcCCCchhH--HHHHHHHHHHHHHcCCHHHH
Q 000236 1765 ISLSLPPKKM--KFLFKKYLEYEKSVGEEERI 1794 (1810)
Q Consensus 1765 l~~~~~p~~~--~~lw~~yl~~E~~~G~~~~a 1794 (1810)
+. ..|... ...+...+.-..+.|..+.+
T Consensus 168 ~~--~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 168 IE--NYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HH--HSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HH--HCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 98 333332 22333334444556766543
No 332
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional
Probab=97.43 E-value=0.00055 Score=76.12 Aligned_cols=76 Identities=20% Similarity=0.436 Sum_probs=63.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccC-----------CccccCCCCcEEEEEEEEEeCCC-----
Q 000236 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLS----- 1315 (1810)
Q Consensus 1252 ~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~-----------~~~~~f~~G~~V~~~Vl~vd~~~----- 1315 (1810)
.+|+++.|.|++++++|+||+++ .++|++|.+++.+++.. +....|++|+.|+++|++++.+.
T Consensus 80 ~~GEVv~g~V~~v~~~Gi~V~lg-~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~~~ 158 (187)
T PRK08563 80 ELQEVVEGEVVEVVEFGAFVRIG-PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRPRG 158 (187)
T ss_pred cCCCEEEEEEEEEEccEEEEEEe-CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCCCC
Confidence 47999999999999999999998 49999999999876432 23457899999999999998754
Q ss_pred CEEEEEEecCccc
Q 000236 1316 KRVEVTLKTSDSR 1328 (1810)
Q Consensus 1316 ~ri~lSlk~~~~~ 1328 (1810)
.+|.+|++.....
T Consensus 159 ~~I~ls~~~~~LG 171 (187)
T PRK08563 159 SKIGLTMRQPGLG 171 (187)
T ss_pred CEEEEEecCCCCC
Confidence 3899999976543
No 333
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.39 E-value=0.025 Score=63.99 Aligned_cols=184 Identities=14% Similarity=0.091 Sum_probs=110.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--HH
Q 000236 1560 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--KV 1637 (1810)
Q Consensus 1560 ~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~--~i 1637 (1810)
.+..|+.-+.-.++.|++++|...|+++...+|+++-.++..+-++|.++ ..+ +.+.|...++|-++..|.. --
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y--k~~--~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY--KNG--EYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH--hcc--cHHHHHHHHHHHHHhCCCCCChh
Confidence 45667777777788888888888888888888877765555555555444 334 3477888888888888764 33
Q ss_pred HHHHHHHHHH----------hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhCCCCChHHHH
Q 000236 1638 HLALLGLYER----------TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFI 1707 (1810)
Q Consensus 1638 ~~~l~~~~~~----------~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~p~~~~~~~~ 1707 (1810)
|..|+..+.. ..-..+|...|+..+.+||++.=+ ..|..-+..+-..+ ..-=
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya-------------~dA~~~i~~~~d~L-----A~~E 170 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA-------------PDAKARIVKLNDAL-----AGHE 170 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch-------------hhHHHHHHHHHHHH-----HHHH
Confidence 3333332221 111346777788888888866421 11111111111111 1223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1708 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDL---WSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1708 ~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~l---w~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
+..|.++.+.|.+..|..-|+.+++.+|+.... ...+...+.+.|-.+.|.. ..++|.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~-~~~vl~ 231 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK-TAKVLG 231 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH-HHHHHH
Confidence 455777888888888888888888888876543 4444455566776666555 445555
No 334
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0016 Score=77.22 Aligned_cols=98 Identities=22% Similarity=0.237 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000236 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1714 (1810)
Q Consensus 1636 ~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~ 1714 (1810)
..|+.++..|.+.+.|.+|....++++...+.+.++.++.++.++.. +++.|+..|++|++..|.++ .+-..++.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk--a~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK--AARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999 99999999999999999996 5666666655
Q ss_pred HHcC-CHHHHHHHHHHHHHhCC
Q 000236 1715 FKNG-VADRGRSMFEGILSEYP 1735 (1810)
Q Consensus 1715 ~~~g-~~e~Ar~lfe~al~~~P 1735 (1810)
.+.. ..++.+.+|.+++...+
T Consensus 336 ~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 5444 35566888888876654
No 335
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=97.34 E-value=0.00023 Score=85.63 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=85.7
Q ss_pred cccccCCCeEeeEEEeecCCCeEEEeccchhcchhccC--CCccccC--CCCCEEEEEEEEEecCeEEEEECCCeEEEee
Q 000236 590 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL--PSDASHI--HPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 665 (1810)
Q Consensus 590 ~~~~k~G~~i~~vl~id~~~~~v~ls~K~~l~~~~~~~--~~~~~~~--~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~ 665 (1810)
....++||.++.-+....-++....++|+.+...-... -.-|+++ +.|+++.|+|.++.+.|+||.+ |++.||+|
T Consensus 84 ~~~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP 162 (362)
T PRK12327 84 NPAYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSEREGDIVTGVVQRRDNRFVYVNL-GKIEAVLP 162 (362)
T ss_pred CccccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEEeCCcEEEEe-CCeEEEec
Confidence 34577899887322222223444555666665432211 1124555 7999999999999999999999 67999999
Q ss_pred CCccCcccccCcccCcCCCCEEEEEEEEeeCCCC--eEEEeecccccCCCChhhHHHHHHHH
Q 000236 666 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFLLE 725 (1810)
Q Consensus 666 ~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~--rl~lSlk~~~~~~~~~~~~~~~~~~~ 725 (1810)
.+++. |.+.|++||+++|.|.+++.+.+ .+.||.. ++.|+..+|..+
T Consensus 163 ~~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSRt-------~p~~v~~Lfe~E 211 (362)
T PRK12327 163 PAEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSRT-------HPGLVKRLFELE 211 (362)
T ss_pred HHHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEeC-------CHHHHHHHHHHh
Confidence 88774 35779999999999999996654 4777753 456677777643
No 336
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.33 E-value=0.023 Score=60.13 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 000236 1668 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIY 1744 (1810)
Q Consensus 1668 ~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~--~~~lw~~y 1744 (1810)
...-.++++..+.+. ++.+|+..|++++.-.-.+. ..+++.+|+..+..+++..|...++.+.+.+|. .+|-...|
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d-~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD-AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC-HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 445567888889999 99999999999997654443 689999999999999999999999999999986 57788889
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHH
Q 000236 1745 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1793 (1810)
Q Consensus 1745 a~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~ 1793 (1810)
+..+...|.+++|++.|+.+++ .+|... --..|..|..++|...+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~--~ypg~~--ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS--YYPGPQ--ARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH--hCCCHH--HHHHHHHHHHHhcchhH
Confidence 9999999999999999999999 776543 45568888888885444
No 337
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain. RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination.
Probab=97.30 E-value=0.0014 Score=62.74 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=52.7
Q ss_pred CCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccC-------c----ccccCCCCEEEEEEEEEecCCCe
Q 000236 1343 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-------I----ETIYRAGEKVKVKILKVDKEKRR 1408 (1810)
Q Consensus 1343 ~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~-------~----~~~~~~G~~V~~~I~~id~~~~r 1408 (1810)
+|+++.|+|++++++|+||.++| +++++|.+.+.++..-+ | ...++.|+.|++||+.+..+.+.
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~Gp--l~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~ 75 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVGP--LSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDATD 75 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEcC--ceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEccCc
Confidence 58999999999999999999985 99999999987654322 1 34588999999999999876554
No 338
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.031 Score=62.72 Aligned_cols=183 Identities=10% Similarity=0.072 Sum_probs=124.5
Q ss_pred CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--
Q 000236 1559 NSSFVWIKY-MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-- 1635 (1810)
Q Consensus 1559 ~~~~~W~~y-~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-- 1635 (1810)
.+-..|.-+ +.+++..++++.|..+.++.. .+. ....-.....+.. ..+.|++..+++.+..+..
T Consensus 105 ~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-~lE---------~~Al~VqI~lk~~--r~d~A~~~lk~mq~ided~tL 172 (299)
T KOG3081|consen 105 GSNLIDLLLAAIIYMHDGDFDEALKALHLGE-NLE---------AAALNVQILLKMH--RFDLAEKELKKMQQIDEDATL 172 (299)
T ss_pred chhHHHHHHhhHHhhcCCChHHHHHHHhccc-hHH---------HHHHHHHHHHHHH--HHHHHHHHHHHHHccchHHHH
Confidence 333355544 445688899999998887732 211 1111112223334 3577888888887776553
Q ss_pred -HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000236 1636 -KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1713 (1810)
Q Consensus 1636 -~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l 1713 (1810)
.+-.+|+.+..-.+++++|.-+|+.+..+++..+.+..-.|.+.+.+ ++++|..+++.||...++. +.++.+..-+
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d--petL~Nliv~ 250 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD--PETLANLIVL 250 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC--HHHHHHHHHH
Confidence 34445555556667899999999999999999999999999999999 9999999999999988776 5788888777
Q ss_pred HHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1714 EFKNGVA-DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1714 ~~~~g~~-e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
-.-.|.. +---..+.++...+|..+ |.. +++...+-|+|++.
T Consensus 251 a~~~Gkd~~~~~r~l~QLk~~~p~h~--~vk---------~~~ekeaeFDrl~~ 293 (299)
T KOG3081|consen 251 ALHLGKDAEVTERNLSQLKLSHPEHP--FVK---------HLNEKEAEFDRLVL 293 (299)
T ss_pred HHHhCCChHHHHHHHHHHHhcCCcch--HHH---------HHHHHHHHHHHHHH
Confidence 7777744 444445566666777643 332 23344455666665
No 339
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.0041 Score=70.79 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=85.5
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCC
Q 000236 1645 YERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGV 1719 (1810)
Q Consensus 1645 ~~~~g~~~~A~~~~e~~lk~~~~~---~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~l~~~~g~ 1719 (1810)
+..+|+|..|.+.|..-++.||++ +.+++-|++.++.+ +++.|...|.++.+.+|++. .++.++++|..+.++|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 346788999999999999999865 56788889999999 99999999999999999874 45899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHH
Q 000236 1720 ADRGRSMFEGILSEYPKRTDLWS 1742 (1810)
Q Consensus 1720 ~e~Ar~lfe~al~~~P~~~~lw~ 1742 (1810)
.+.|+..|+.+++.||+....-.
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHH
Confidence 99999999999999998766543
No 340
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.27 E-value=0.038 Score=64.18 Aligned_cols=161 Identities=13% Similarity=0.049 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000236 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV---WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1710 (1810)
Q Consensus 1636 ~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~---w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~-~~~~~~ 1710 (1810)
..++..+.-+.+.|++++|.+.|++++..+|.+..+ .+.++..+.+. +++.|...|++.++.+|.+... .++...
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 344455556667888888888888888888866443 36777778888 8888888888888888887643 234444
Q ss_pred HHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHH---HHH--------------HHHHHHHHcCChH
Q 000236 1711 AILEFKNG---------------V---ADRGRSMFEGILSEYPKRTD---LWS--------------IYLDQEIRLGDVD 1755 (1810)
Q Consensus 1711 a~l~~~~g---------------~---~e~Ar~lfe~al~~~P~~~~---lw~--------------~ya~~e~k~gd~e 1755 (1810)
|...+..+ | ...|...|+++++.+|++.- ++. .-+.++.+.|.+.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 43322221 2 24566888888999988632 111 2234466788999
Q ss_pred HHHHHHHHHHhcCCC--chhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000236 1756 LIRGLFERAISLSLP--PKKMKFLFKKYLEYEKSVGEEERIEYVK 1798 (1810)
Q Consensus 1756 ~ar~lferal~~~~~--p~~~~~lw~~yl~~E~~~G~~~~a~~v~ 1798 (1810)
.|..-|+.++. +.| +...+.+|. ...-....|..+.+....
T Consensus 193 AA~~r~~~v~~-~Yp~t~~~~eal~~-l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 193 AVVNRVEQMLR-DYPDTQATRDALPL-MENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHH-HCCCCchHHHHHHH-HHHHHHHcCChHHHHHHH
Confidence 99999999998 332 122222222 223334567777766544
No 341
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.19 E-value=0.0016 Score=60.18 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=21.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1715 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1715 ~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
++.+++++|...+++++..+|.++.+|..++.++.+.|+++.|+..|++++.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444443
No 342
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.17 E-value=0.0035 Score=64.57 Aligned_cols=109 Identities=13% Similarity=0.186 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhCC-CCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcC
Q 000236 1687 VQAVVQRALLSLP-RHKHIKFISQTAILEFKN----GVADRGRSMFEGILSEYPKR---------TDLWSIYLDQEIRLG 1752 (1810)
Q Consensus 1687 A~~ll~ralk~~p-~~~~~~~~~~~a~l~~~~----g~~e~Ar~lfe~al~~~P~~---------~~lw~~ya~~e~k~g 1752 (1810)
.++.|+..+.... .......|..|..+..+. +.-..-+.+++++++.+.++ ..+|..||++..
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--- 80 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--- 80 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS---
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc---
Confidence 3445555555444 333345555555544422 23344455566665554332 346777776543
Q ss_pred ChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000236 1753 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1802 (1810)
Q Consensus 1753 d~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl 1802 (1810)
.++.+|..+.+.....+-+ .+|..|+.+....|+.++|.++|++++
T Consensus 81 ---~~~~if~~l~~~~IG~~~A-~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 ---DPREIFKFLYSKGIGTKLA-LFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ---HHHHHHHHHHHHTTSTTBH-HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCccHHHH-HHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 6777777777765655555 678888888777788888888887764
No 343
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.014 Score=62.27 Aligned_cols=101 Identities=16% Similarity=0.090 Sum_probs=81.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 000236 1569 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYER 1647 (1810)
Q Consensus 1569 ~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~ 1647 (1810)
.-+..+|++++|..-|.+||..+|.....+|.-++...+.....++.+ +.|..-.-+|++++|.. ....+.+.+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~--e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW--ESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH--HHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 345678999999999999999999877677777777777777777754 88888888899988875 677778888888
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHH
Q 000236 1648 TEQNKLADELLYKMIKKFKHSCKV 1671 (1810)
Q Consensus 1648 ~g~~~~A~~~~e~~lk~~~~~~~~ 1671 (1810)
..+|++|.+-|.+.+...|....+
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHH
Confidence 888888888888888877654443
No 344
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.13 E-value=0.00083 Score=55.31 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000236 1705 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1746 (1810)
Q Consensus 1705 ~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~ 1746 (1810)
.+|..+|+++.+.|++++|+.+|+++++.+|++.++|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999999998875
No 345
>cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.10 E-value=0.0034 Score=52.63 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=53.9
Q ss_pred ccEEEEEEEEeeccee-EEEecccCceeEEEeeeeccCccccCCCeEEEEEEEeecccceEEEee
Q 000236 750 GSVIEGKVHESNDFGV-VVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 813 (1810)
Q Consensus 750 G~~v~~~V~~~~~~g~-~v~l~~~~~v~g~i~~~~ls~~~~~~G~~v~~~vl~~~~~~~~v~ls~ 813 (1810)
|+..+-.|.+..++|- .+.-.+-.|++-..+.+|+.+.++.+|++++++|+++|.-+..+++|+
T Consensus 1 G~~L~LvV~~~~edgsv~fs~g~v~g~tv~AtryH~~g~nl~pGqK~kaviLhvD~l~~~VhVSl 65 (65)
T cd05700 1 GDQLKLVVQDVTEDGSVMFSGGQVSGLTVLASRYHKEGVNVTPGCKLKAVILHVDFVKSQVHVSL 65 (65)
T ss_pred CceEEEEEeeeccCCcEEEecCCcCCcEEEEEEEEecceecCCCceeEEEEEEEeeEEeEEEEeC
Confidence 6777888999888874 455554457777889999999999999999999999999999998885
No 346
>cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 10 (hs10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.06 E-value=0.00058 Score=57.92 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=52.3
Q ss_pred ceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCC-CCCCCcccccCCCeEEEEEeecC
Q 000236 847 QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 904 (1810)
Q Consensus 847 ~~v~g~V~~i~~~~v~v~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~Gq~v~a~V~~~~ 904 (1810)
+..++.|+.+..++++||+.+.++++.+.-.+|+| ++++.++++++||++.+.|....
T Consensus 2 S~htA~VQh~~kdfAvvSL~~t~~L~a~p~~sHLNdtfrf~seklkvG~~l~v~lk~~~ 60 (69)
T cd05701 2 SRHTAIVQHADKDFAIVSLATTGDLAAFPTRSHLNDTFRFDSEKLSVGQCLDVTLKDPN 60 (69)
T ss_pred CccchhhhhhhhceEEEEeeccccEEEEEchhhccccccccceeeeccceEEEEEecCc
Confidence 45778999999999999999999999999899998 77778899999999999988754
No 347
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.04 E-value=0.0024 Score=59.03 Aligned_cols=69 Identities=25% Similarity=0.178 Sum_probs=61.7
Q ss_pred HHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000236 1676 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1746 (1810)
Q Consensus 1676 a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~ 1746 (1810)
...+.++ ++++|.+.+++++...|.+ +.+|..+|.++++.|++++|+..|+++++..|++.+.-...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD--PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc--chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4677888 9999999999999999987 5899999999999999999999999999999998886555443
No 348
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=97.01 E-value=0.0017 Score=59.01 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=63.0
Q ss_pred CCCCEEEEEEEEEeeceEEEEe-CCCcEEEEE-cccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEE
Q 000236 1252 SPNMIVQGYVKNVTSKGCFIML-SRKLDAKVL-LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1322 (1810)
Q Consensus 1252 ~~G~~v~G~V~~v~~~G~fV~l-~~~v~g~v~-~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSl 1322 (1810)
++|+++. .|+.+.+.|++|.| +.+++|++. .++++..+....++.+ +|....+.|+.+|+++|-|.||.
T Consensus 15 ~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 15 NINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred CCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 5899998 88899999999988 557999999 9999999888888888 99999999999999999999984
No 349
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.99 E-value=0.0024 Score=72.73 Aligned_cols=107 Identities=16% Similarity=0.059 Sum_probs=96.8
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000236 1640 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1718 (1810)
Q Consensus 1640 ~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g 1718 (1810)
..++-|.+.|+|++|.+.|.+++..+|.++-.+.+.|..|++. ++..|+.-...|+.++.. ++++|.+-++.-+.+|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHHh
Confidence 4456788899999999999999999999999999999999999 999999999999987633 4789999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000236 1719 VADRGRSMFEGILSEYPKRTDLWSIYLDQE 1748 (1810)
Q Consensus 1719 ~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e 1748 (1810)
...+|..-+|++|+..|++.++.-.|+++-
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 999999999999999999999988888764
No 350
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.0042 Score=75.65 Aligned_cols=158 Identities=17% Similarity=0.279 Sum_probs=107.3
Q ss_pred CccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000236 629 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 708 (1810)
Q Consensus 629 ~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~ 708 (1810)
-+++++..|..++|.|.++..||+||++...+.||+|.++++.. ..|.+|+.+-+.|..+-++++.+.+-....
T Consensus 115 c~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~~ 188 (715)
T COG1107 115 CTMEDVEAGKYYKGIVSRVEKYGVFVELNSHVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVGL 188 (715)
T ss_pred cchhhcccceeeeccccchhhhcceeecChhhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecCC
Confidence 36788999999999999999999999999999999999999852 248999999999999999889887776554
Q ss_pred ccCCCChhhHHHHHHHHHHHHHhhcccCCCcccccccccccccEE--EEEEEEeecce--eEEEecccCceeEEEeeeec
Q 000236 709 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI--EGKVHESNDFG--VVVSFEEHSDVYGFITHHQL 784 (1810)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v--~~~V~~~~~~g--~~v~l~~~~~v~g~i~~~~l 784 (1810)
...... .+- .|+ |-..... ..+ .+|+.| .|+|+.++.++ -++++.+. +|+++..-+
T Consensus 189 ~~Y~~~-----~~~--ke~--------~r~~i~~-id~-~ig~tV~I~GeV~qikqT~GPTVFtltDe---tg~i~aAAF 248 (715)
T COG1107 189 DRYREV-----QVE--KEL--------PRTLIDD-LDE-MIGKTVRIEGEVTQIKQTSGPTVFTLTDE---TGAIWAAAF 248 (715)
T ss_pred ccchhh-----hhh--hhc--------ccccHHH-HHh-hcCceEEEEEEEEEEEEcCCCEEEEEecC---CCceehhhh
Confidence 421100 000 000 0000011 122 567665 58999998764 35677753 566655544
Q ss_pred cC------ccccCCCeEEEEEEEeecccceEEEee
Q 000236 785 AG------ATVESGSVIQAAILDVAKAERLVDLSL 813 (1810)
Q Consensus 785 s~------~~~~~G~~v~~~vl~~~~~~~~v~ls~ 813 (1810)
-+ -.+++|+-|... =.++...+.+++-+
T Consensus 249 e~aGvRAyP~IevGdiV~Vi-G~V~~r~g~lQiE~ 282 (715)
T COG1107 249 EEAGVRAYPEIEVGDIVEVI-GEVTRRDGRLQIEI 282 (715)
T ss_pred ccCCcccCCCCCCCceEEEE-EEEeecCCcEEEee
Confidence 32 168889988743 34555666665543
No 351
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=96.95 E-value=0.0083 Score=61.83 Aligned_cols=106 Identities=15% Similarity=0.275 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHh--c---HHHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHcC
Q 000236 1654 ADELLYKMIKKFK---HSCKVWLRRVQRLLKQ--Q---QEGVQAVVQRALLSLPRHK-------HIKFISQTAILEFKNG 1718 (1810)
Q Consensus 1654 A~~~~e~~lk~~~---~~~~~w~~~a~~~~~~--~---~~~A~~ll~ralk~~p~~~-------~~~~~~~~a~l~~~~g 1718 (1810)
.+..|+..+..+. +....|..|..+..+. . ......+++||+..+.... .+.+|+.||.+..
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--- 80 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--- 80 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS---
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc---
Confidence 3444555554443 4455555555555554 1 2334455555555543321 2355555555321
Q ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000236 1719 VADRGRSMFEGILSE--YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1765 (1810)
Q Consensus 1719 ~~e~Ar~lfe~al~~--~P~~~~lw~~ya~~e~k~gd~e~ar~lferal 1765 (1810)
.++.+|..+... .-+.+.+|..||.++...|++++|..+|+.+|
T Consensus 81 ---~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 ---DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ---HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 555555555443 23345556666666666666666666665543
No 352
>PRK15331 chaperone protein SicA; Provisional
Probab=96.94 E-value=0.034 Score=58.87 Aligned_cols=98 Identities=11% Similarity=-0.061 Sum_probs=80.5
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000236 1640 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1718 (1810)
Q Consensus 1640 ~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g 1718 (1810)
.++--+.+.|++++|..+|.-++-..+.+++.|+.+|.++-.. ++++|..+|..|....+.+. ......|+.++..|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp--~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY--RPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--CccchHHHHHHHhC
Confidence 3334455789999999999999988888999999999998888 99999999999988876653 55777888899999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHH
Q 000236 1719 VADRGRSMFEGILSEYPKRTDL 1740 (1810)
Q Consensus 1719 ~~e~Ar~lfe~al~~~P~~~~l 1740 (1810)
+.+.|+..|+.++. .|....+
T Consensus 120 ~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 120 KAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred CHHHHHHHHHHHHh-CcchHHH
Confidence 99999999999887 4554333
No 353
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.25 Score=54.88 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=82.9
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHc
Q 000236 1643 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH----KHIKFISQTAILEFKN 1717 (1810)
Q Consensus 1643 ~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~----~~~~~~~~~a~l~~~~ 1717 (1810)
.+|..+|..+.|...++++-+ .++. +++.|.++|+|++..+... ...+++-+.+..+.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 456666666666666666554 3455 7888888888887765442 2235666666777777
Q ss_pred CCHHHHHHHHHHH------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHHHcC
Q 000236 1718 GVADRGRSMFEGI------LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL--SLPPKKMKFLFKKYLEYEKSVG 1789 (1810)
Q Consensus 1718 g~~e~Ar~lfe~a------l~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~--~~~p~~~~~lw~~yl~~E~~~G 1789 (1810)
..+++|-..|.+- ...+|+....+...+.++.-..|+..|...|....+. -+.+.+. ......+.+.. .|
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~-r~lenLL~ayd-~g 241 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS-RSLENLLTAYD-EG 241 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH-HHHHHHHHHhc-cC
Confidence 7777776666654 2334555555555555566666777777777775551 1122333 23333333322 57
Q ss_pred CHHHHHHHHH
Q 000236 1790 EEERIEYVKQ 1799 (1810)
Q Consensus 1790 ~~~~a~~v~~ 1799 (1810)
|.+++..++.
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 7777666543
No 354
>PRK05054 exoribonuclease II; Provisional
Probab=96.92 E-value=0.0024 Score=84.12 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=59.3
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcc---cc--cC-------cccccCCCCEEEEEEEEEecCCCeeEE
Q 000236 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED---HV--DN-------IETIYRAGEKVKVKILKVDKEKRRISL 1411 (1810)
Q Consensus 1344 G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~---~~--~~-------~~~~~~~G~~V~~~I~~id~~~~ri~l 1411 (1810)
|+.+.|.|+++++||+||+|.+.+++|++|++.+.+. +. .+ -...|+.||.|+++|.++|.++++|.+
T Consensus 562 ~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~~i~~ 641 (644)
T PRK05054 562 DTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETRSIIA 641 (644)
T ss_pred CeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccCeEEE
Confidence 4599999999999999999998789999999999763 11 01 125799999999999999999999987
Q ss_pred ee
Q 000236 1412 GM 1413 (1810)
Q Consensus 1412 sl 1413 (1810)
.+
T Consensus 642 ~~ 643 (644)
T PRK05054 642 RP 643 (644)
T ss_pred EE
Confidence 64
No 355
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain. RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination.
Probab=96.90 E-value=0.0046 Score=59.22 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=50.7
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCc-----------cccCCCCcEEEEEEEEEeCCC
Q 000236 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP-----------EKEFPIGKLVAGRVLSVEPLS 1315 (1810)
Q Consensus 1253 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~-----------~~~f~~G~~V~~~Vl~vd~~~ 1315 (1810)
.|+++.|.|+++++.|+||++| .+++|+|...+.+++..+| ...+.+|+.|++||+.+..+.
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~G-pl~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~ 73 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVG-PLSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDA 73 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEc-CceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEcc
Confidence 4899999999999999999998 5899999988877654443 234678999999998886543
No 356
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.89 E-value=0.016 Score=60.02 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 000236 1668 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1740 (1810)
Q Consensus 1668 ~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~-~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~l 1740 (1810)
++..++.-|.-.++. ++++|.+.|+.....+|.... ..+.+.++..+++.++++.|+..+++.++.+|+++.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 455566666667777 888888888888888887532 3677777888888888999999999998888887663
No 357
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.87 E-value=0.021 Score=58.10 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHH
Q 000236 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----KKVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLR 1674 (1810)
Q Consensus 1602 lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~----~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~---~~~~w~~ 1674 (1810)
+|......+-..| ..++|...|++|+..-.. ...++.++..|...|++++|..++++++..+|+ +..++..
T Consensus 3 ~~~~~A~a~d~~G--~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLG--REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3555556666777 458888888888875433 267788888888888888888888888888776 6677777
Q ss_pred HHHHHHHh-cHHHHHHHHHHHHH
Q 000236 1675 RVQRLLKQ-QQEGVQAVVQRALL 1696 (1810)
Q Consensus 1675 ~a~~~~~~-~~~~A~~ll~ralk 1696 (1810)
++..+... +.++|...+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777 77777777766654
No 358
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.87 E-value=0.018 Score=59.67 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHH-HHHHHHH
Q 000236 1638 HLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK-FISQTAI 1712 (1810)
Q Consensus 1638 ~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~---~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~-~~~~~a~ 1712 (1810)
+..-+.-..+.|+|++|.+.|+.+..+||. ...+-+.++..+++. ++++|...++|-++++|.|..+. ++...|.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 344445567889999999999999998874 456677777778888 99999999999999999886432 3444443
Q ss_pred HHHHcCC---------------HHHHHHHHHHHHHhCCCCHH
Q 000236 1713 LEFKNGV---------------ADRGRSMFEGILSEYPKRTD 1739 (1810)
Q Consensus 1713 l~~~~g~---------------~e~Ar~lfe~al~~~P~~~~ 1739 (1810)
..+++.. ...|...|+++++.+|++..
T Consensus 93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 4443332 67788888888888887643
No 359
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0089 Score=63.51 Aligned_cols=75 Identities=24% Similarity=0.389 Sum_probs=63.6
Q ss_pred cCCCCCCcEEEEEEEEEeeceEEEEEeC---------CceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCe
Q 000236 1338 LSNLHVGDIVIGQIKRVESYGLFITIEN---------TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1408 (1810)
Q Consensus 1338 ~~~~~~G~~v~G~V~~i~~~G~fV~l~~---------~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~r 1408 (1810)
..-++.|++|-|+|+++....+.|++-. +...|-+|+|++++.+.++.++.|++||.|+|+|++.- -.
T Consensus 59 ~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~ 135 (188)
T COG1096 59 PPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATSGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DP 135 (188)
T ss_pred CCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCCCCceeeEEEEecccccccccccccccccEEEEEEEecC---CC
Confidence 4468899999999999999999888741 02456789999999999999999999999999999984 45
Q ss_pred eEEeecc
Q 000236 1409 ISLGMKS 1415 (1810)
Q Consensus 1409 i~lslk~ 1415 (1810)
+.||++.
T Consensus 136 ~~Lst~~ 142 (188)
T COG1096 136 IQLSTKG 142 (188)
T ss_pred eEEEecC
Confidence 7788765
No 360
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=96.69 E-value=0.0077 Score=65.59 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=60.7
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccc------------cCcccccCCCCEEEEEEEEEecCC--
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV------------DNIETIYRAGEKVKVKILKVDKEK-- 1406 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~------------~~~~~~~~~G~~V~~~I~~id~~~-- 1406 (1810)
.-.|++++|.|++++++|+||++++ .++++|.+.+.++.. ++-...++.|+.|++||+.+..+.
T Consensus 79 Pf~gEVv~g~V~~v~~~G~~v~~Gp--~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~ 156 (176)
T PTZ00162 79 PFKDEVLDAIVTDVNKLGFFAQAGP--LKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDASN 156 (176)
T ss_pred cCCCCEEEEEEEEEecceEEEEeeC--eEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCCC
Confidence 3478999999999999999999986 779999999975421 111356899999999999886543
Q ss_pred CeeEEeecccccCC
Q 000236 1407 RRISLGMKSSYFKN 1420 (1810)
Q Consensus 1407 ~ri~lslk~~~~~~ 1420 (1810)
.++..++|..|.+.
T Consensus 157 ~~~i~T~~~~~LG~ 170 (176)
T PTZ00162 157 LFAIATINSDYLGP 170 (176)
T ss_pred cEEEEEecCCCcCc
Confidence 34566888876644
No 361
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.65 E-value=0.1 Score=58.17 Aligned_cols=206 Identities=13% Similarity=0.247 Sum_probs=131.4
Q ss_pred CCCCcHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCc---cchhh-HHHHHHHHHHHHHHc
Q 000236 1542 DAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENE-KLNIWVAYFNLENEY 1613 (1810)
Q Consensus 1542 ~~~~a~~~fer~l~~~P~~----~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~---~~e~e-~~~lW~~yl~le~~~ 1613 (1810)
++.+|...|++.+...|.. ..+....+....+++++++..+.|.+.|.-+.. +.-.| ..|.-+.|+.--.+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 3556777888888777653 233455666778899999999999888853321 11122 235555666532222
Q ss_pred CCCCHHHHHHHHHH---HHhcCCCHHHHH----HHHHHHHHhCChHHHHHHHHHHHHhcC------------CCHHHHHH
Q 000236 1614 GNPPEEAVVKVFQR---ALQYCDPKKVHL----ALLGLYERTEQNKLADELLYKMIKKFK------------HSCKVWLR 1674 (1810)
Q Consensus 1614 g~~~~e~a~~vfer---Al~~~~~~~i~~----~l~~~~~~~g~~~~A~~~~e~~lk~~~------------~~~~~w~~ 1674 (1810)
+-..+.|+. |++......+|+ .++.+|...+.|.+...++.++-..+. +-.++|..
T Consensus 122 -----~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 122 -----DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred -----HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 333444443 333333445664 577777777776666666665544332 23556767
Q ss_pred HHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHH---HHHH-HHHHHcCCHHHHHHHHHHHHHhC-----CCCHH--HHH
Q 000236 1675 RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFI---SQTA-ILEFKNGVADRGRSMFEGILSEY-----PKRTD--LWS 1742 (1810)
Q Consensus 1675 ~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~---~~~a-~l~~~~g~~e~Ar~lfe~al~~~-----P~~~~--lw~ 1742 (1810)
-.++|..+ +..+...+|++||-.-..-.|+-++ ...+ .++++.|++++|.+-|-.|++.+ |.+.. -+.
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYL 276 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYL 276 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHH
Confidence 77888888 8888899999998776555553322 2222 36778899999999999999876 54544 366
Q ss_pred HHHHHHHHcC
Q 000236 1743 IYLDQEIRLG 1752 (1810)
Q Consensus 1743 ~ya~~e~k~g 1752 (1810)
.+|.++++.|
T Consensus 277 VLANMLmkS~ 286 (440)
T KOG1464|consen 277 VLANMLMKSG 286 (440)
T ss_pred HHHHHHHHcC
Confidence 6778887754
No 362
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.58 E-value=0.6 Score=60.80 Aligned_cols=220 Identities=11% Similarity=0.070 Sum_probs=142.7
Q ss_pred hcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCh
Q 000236 1573 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQN 1651 (1810)
Q Consensus 1573 ~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~~~~~~g~~ 1651 (1810)
..+++.+|.....+.++.+|... ...+.-+|.. .+.|.. ++|..+++-.-...+. ......+-.+|.+.+++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~---~a~vLkaLsl--~r~gk~--~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL---YAKVLKALSL--FRLGKG--DEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH---HHHHHHHHHH--HHhcCc--hhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence 45678889999999999998643 2233334433 466744 6677555543322233 35566677789999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC---------HH
Q 000236 1652 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV---------AD 1721 (1810)
Q Consensus 1652 ~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~---------~e 1721 (1810)
++|...|++++.+||. .+..+.+-..|.+- .+.+-.+.=-+.-+.+|++.+ -+|.-..-....... ..
T Consensus 94 d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y-yfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY-YFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc-hHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999999999998 77777666666665 443333333333346788764 566655544332221 34
Q ss_pred HHHHHHHHHHHhC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000236 1722 RGRSMFEGILSEY-PK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1799 (1810)
Q Consensus 1722 ~Ar~lfe~al~~~-P~-~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~ 1799 (1810)
-|+.++++.+... +- ...=...|...+..+|.+++|...+.+-+...+++.+. .+-.+-+++....+.+.+.-++..
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~-~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANL-YLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHhcChHHHHHHHH
Confidence 5677777777655 21 22235556677778999999999997766655665555 566677777777777776555554
Q ss_pred HHH
Q 000236 1800 KAM 1802 (1810)
Q Consensus 1800 rAl 1802 (1810)
|++
T Consensus 251 ~Ll 253 (932)
T KOG2053|consen 251 RLL 253 (932)
T ss_pred HHH
Confidence 444
No 363
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.57 E-value=0.021 Score=65.22 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=81.8
Q ss_pred HHHh-cHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC
Q 000236 1679 LLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLDQEIRLGD 1753 (1810)
Q Consensus 1679 ~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~---~~lw~~ya~~e~k~gd 1753 (1810)
++.. ++..|.+.|..-++.+|... ...+++-+++.++.+|+++.|-.+|.++.+.+|++ ++..+..+..+.+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 4455 89999999999999999863 24678888999999999999999999999999874 6899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCchh
Q 000236 1754 VDLIRGLFERAISLSLPPKK 1773 (1810)
Q Consensus 1754 ~e~ar~lferal~~~~~p~~ 1773 (1810)
.+.|+..|+.++. -+|..
T Consensus 231 ~d~A~atl~qv~k--~YP~t 248 (262)
T COG1729 231 TDEACATLQQVIK--RYPGT 248 (262)
T ss_pred HHHHHHHHHHHHH--HCCCC
Confidence 9999999999999 44444
No 364
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.56 E-value=0.024 Score=56.44 Aligned_cols=93 Identities=17% Similarity=0.088 Sum_probs=76.5
Q ss_pred HHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH---HHHHHHHHH
Q 000236 1674 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP-KRTD---LWSIYLDQE 1748 (1810)
Q Consensus 1674 ~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P-~~~~---lw~~ya~~e 1748 (1810)
.-+-.+.+. +.+.|.+.|.+||...|.+. .+|.+-|+.+.-+|+.++|..-+++++.... +... .+.+-+.++
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~ra--SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERA--SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccch--HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 345566667 89999999999999999884 8999999999999999999999999998754 3333 455556678
Q ss_pred HHcCChHHHHHHHHHHHhcC
Q 000236 1749 IRLGDVDLIRGLFERAISLS 1768 (1810)
Q Consensus 1749 ~k~gd~e~ar~lferal~~~ 1768 (1810)
...|+-+.||.-|++|..+.
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 88999999999999999843
No 365
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=96.56 E-value=0.0063 Score=56.80 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=43.0
Q ss_pred CCCcEEEEEEEEEeeceEEEEEeCC-----------------ceeEEEeccccCcccccC--cccccCCCCEEEEEEEEE
Q 000236 1342 HVGDIVIGQIKRVESYGLFITIENT-----------------NLVGLCHVSELSEDHVDN--IETIYRAGEKVKVKILKV 1402 (1810)
Q Consensus 1342 ~~G~~v~G~V~~i~~~G~fV~l~~~-----------------~v~gl~~~sel~~~~~~~--~~~~~~~G~~V~~~I~~i 1402 (1810)
++|++|.|+|++++..-+++.|--- ...|.+|++++.....+. +.+.|++||.|+|+|+++
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ViSl 82 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVISL 82 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEeeC
Confidence 6899999999999999888887421 467899999987665543 688999999999999975
No 366
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.54 E-value=0.78 Score=54.23 Aligned_cols=218 Identities=13% Similarity=0.064 Sum_probs=159.3
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ccchhhHHHH-HHHHHHHHHHcCCCCH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN-IREENEKLNI-WVAYFNLENEYGNPPE 1618 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~-~~~e~e~~~l-W~~yl~le~~~g~~~~ 1618 (1810)
++.+.++..-+++-..-|.-.-.|...+....+.|+.+.|..+.+......- .+..-+|... .+.--.+..... +.
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda--dp 245 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA--DP 245 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC--Ch
Confidence 4466667777777777888888888888888999999999988876664322 1223333222 121112222333 56
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHH--H
Q 000236 1619 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRA--L 1695 (1810)
Q Consensus 1619 e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ra--l 1695 (1810)
..|+.....|+++.|.. ..-..-+..|.+.|+.-++-.+++++-+.+| .+.+|..|...- --+.+..-++|+ |
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~lY~~ar---~gdta~dRlkRa~~L 321 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIALLYVRAR---SGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHHHHHHhc---CCCcHHHHHHHHHHH
Confidence 88999999999999986 6666777888899999999999999999875 678888776532 234444444544 3
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHh
Q 000236 1696 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR-LGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1696 k~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k-~gd~e~ar~lferal~ 1766 (1810)
..+..+ +....+..++.-+.-|++..||.--+.+.+..|. ..++..+++++.. .||-.++|..+-+++.
T Consensus 322 ~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 322 ESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 334222 3567777788888899999999999999998886 4677788998875 4999999999999997
No 367
>PRK15331 chaperone protein SicA; Provisional
Probab=96.54 E-value=0.036 Score=58.69 Aligned_cols=96 Identities=11% Similarity=-0.029 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000236 1600 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1678 (1810)
Q Consensus 1600 ~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~ 1678 (1810)
++--.++..-..+.| +.+.|..+|+-.+.+.+.+ +.|+.++..+...++|++|...|..+....++++...+..+++
T Consensus 37 le~iY~~Ay~~y~~G--k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 37 MDGLYAHAYEFYNQG--RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 334445555556778 4599999999999988875 8999999999999999999999999999888999999999999
Q ss_pred HHHh-cHHHHHHHHHHHHHh
Q 000236 1679 LLKQ-QQEGVQAVVQRALLS 1697 (1810)
Q Consensus 1679 ~~~~-~~~~A~~ll~ralk~ 1697 (1810)
++.. +.+.|+..|+.++..
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhC
Confidence 9999 999999999999983
No 368
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.53 E-value=0.2 Score=56.82 Aligned_cols=158 Identities=12% Similarity=0.016 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000236 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1711 (1810)
Q Consensus 1636 ~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~---~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a 1711 (1810)
..|..-+.-..+.|++++|...|+.+.+.+|. ..++.+.++..+++. +++.|....+|-++.+|.+.. .-|..|.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHH
Confidence 33444444456677777777777777776653 356666666666666 777777777777777777654 2233333
Q ss_pred HHHHH-------cCC---HHHHHHHHHHHHHhCCCCH---H--------------HHHHHHHHHHHcCChHHHHHHHHHH
Q 000236 1712 ILEFK-------NGV---ADRGRSMFEGILSEYPKRT---D--------------LWSIYLDQEIRLGDVDLIRGLFERA 1764 (1810)
Q Consensus 1712 ~l~~~-------~g~---~e~Ar~lfe~al~~~P~~~---~--------------lw~~ya~~e~k~gd~e~ar~lfera 1764 (1810)
..+.. ..| ..+|..-|+..++.+|++. + .=+.-+.++.+.|.+..|..-|+++
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 32221 122 3345555566677777641 0 1234577888999999999999999
Q ss_pred HhcCCCchhH--HHHHHHHHHHHHHcCCHHHHHH
Q 000236 1765 ISLSLPPKKM--KFLFKKYLEYEKSVGEEERIEY 1796 (1810)
Q Consensus 1765 l~~~~~p~~~--~~lw~~yl~~E~~~G~~~~a~~ 1796 (1810)
+. + +|... ..-...+.......|-.+.|..
T Consensus 194 ~e-~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 194 LE-N-YPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred Hh-c-cccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 98 2 32221 1222223333344666555543
No 369
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.51 E-value=0.13 Score=56.01 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=39.7
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCc
Q 000236 1543 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1593 (1810)
Q Consensus 1543 ~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~ 1593 (1810)
..-|+-+|.++|..+|..+..+..++-++...|++|.|.+.|+..++..|.
T Consensus 81 ~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 81 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 344666788888888888888888888888888888888888888876664
No 370
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.28 Score=55.48 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=53.6
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000236 1643 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1717 (1810)
Q Consensus 1643 ~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-----~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~ 1717 (1810)
+++.++.+.+-|....++|.... ...+...+|+.+... ++..|.-+|+..-..+|.. +.+....|-+.+.+
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T--~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPT--PLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCC--hHHHccHHHHHHHh
Confidence 34445555555555555554432 222222333333222 4555555555555543333 24555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 000236 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1754 (1810)
Q Consensus 1718 g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~ 1754 (1810)
|++++|..+++.+|..+++.++.....+-+-...|..
T Consensus 221 ~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 6666666666666666666655555555554444443
No 371
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=96.46 E-value=0.0047 Score=73.78 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=85.2
Q ss_pred cccccCCCeEeeEEEeecCCCeEEEeccchhcchhccCC--CccccC--CCCCEEEEEEEEEecC-eEEEEECCCeEEEe
Q 000236 590 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP--SDASHI--HPNSVVHGYVCNIIET-GCFVRFLGRLTGFA 664 (1810)
Q Consensus 590 ~~~~k~G~~i~~vl~id~~~~~v~ls~K~~l~~~~~~~~--~~~~~~--~~G~~~~G~V~~i~~~-G~fV~f~~gv~Glv 664 (1810)
...+++||.++.-+..+.-.+...-++|+.+......+. .-|+++ +.|+.+.|+|.++... ++||.+ |+..|++
T Consensus 88 ~~~~~vGd~i~~~i~~~~fgRiaaq~akq~i~Qkir~~er~~i~~ey~~~~Geiv~g~V~r~~~~~~i~vdl-g~~ea~L 166 (374)
T PRK12328 88 DPSVEIGDELTYELSLENMGRTAANTLFKELEYHIQRLLEESIFEKYKKKVGKIVFGTVVRVDNEENTFIEI-DEIRAVL 166 (374)
T ss_pred CCCCCCCCEEEEecChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEEEEEecCCCEEEEc-CCeEEEe
Confidence 446788999984333333344455567777733222110 112333 5899999999999874 599999 6899999
Q ss_pred eCCccCcccccCcccCcCCCCEEEEEEEEeeCCCC---eEEEeecccccCCCChhhHHHHHHHH
Q 000236 665 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG---RITLSLKQSCCSSTDASFMQEHFLLE 725 (1810)
Q Consensus 665 ~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~---rl~lSlk~~~~~~~~~~~~~~~~~~~ 725 (1810)
|.++.. |.+.|++||.++|.|.+|+...+ .+.||.. ++.|+..+|..+
T Consensus 167 P~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSRt-------~p~~v~~Lfe~E 217 (374)
T PRK12328 167 PMKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSRT-------SPKFLEALLELE 217 (374)
T ss_pred CHHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEcC-------CHHHHHHHHHHh
Confidence 998864 56789999999999999998765 6777753 456677777644
No 372
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.42 E-value=0.024 Score=69.27 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=55.7
Q ss_pred cCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000236 1665 FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTAILEFKNGVADRGRSMFEGILSEY 1734 (1810)
Q Consensus 1665 ~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~-~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~ 1734 (1810)
.|+++..|++++..|.+. ++++|...|++||+..|.+... .+|++.|..|..+|++++|...|++++..+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 457788888888888888 8888888888888888876422 458888888888888888888888888763
No 373
>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]
Probab=96.41 E-value=0.0028 Score=82.52 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=69.2
Q ss_pred cCCCCCEEEEEEEEEecCe---EEEEECCCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000236 633 HIHPNSVVHGYVCNIIETG---CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 709 (1810)
Q Consensus 633 ~~~~G~~~~G~V~~i~~~G---~fV~f~~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~ 709 (1810)
.+..|.++.++|++++..- +-|++.+|++||+|.+++|+..+.+|+..+++||+|.|+|+++|.++=.+.||++.+.
T Consensus 982 t~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~sd 1061 (1299)
T KOG1856|consen 982 TFYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTSD 1061 (1299)
T ss_pred HhccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhHH
Confidence 3678999999999997765 5679999999999999999999999999999999999999999987767778887665
Q ss_pred c
Q 000236 710 C 710 (1810)
Q Consensus 710 ~ 710 (1810)
.
T Consensus 1062 l 1062 (1299)
T KOG1856|consen 1062 L 1062 (1299)
T ss_pred h
Confidence 4
No 374
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.39 E-value=0.026 Score=60.21 Aligned_cols=92 Identities=13% Similarity=-0.003 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-c----------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000236 1651 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q----------QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1719 (1810)
Q Consensus 1651 ~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~----------~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~ 1719 (1810)
++.|++.++....+.|.+.+.+++++..+.+. + +++|..-|+.||...|... .++..++..+..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHh
Confidence 46788888888888888888888888877776 3 3556677778888888873 677777777665432
Q ss_pred -----------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 000236 1720 -----------ADRGRSMFEGILSEYPKRTDLWSIY 1744 (1810)
Q Consensus 1720 -----------~e~Ar~lfe~al~~~P~~~~lw~~y 1744 (1810)
+++|...|++|+...|.+...+..+
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 6788888888888899886655543
No 375
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.38 E-value=0.047 Score=54.41 Aligned_cols=93 Identities=19% Similarity=0.084 Sum_probs=77.2
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCC--ChHHHHHHHHHHHHHcCCH
Q 000236 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKNGVA 1720 (1810)
Q Consensus 1644 ~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~--~~~~~~~~~a~l~~~~g~~ 1720 (1810)
++...|+.+.|.+.|.+++...|..+.+|.+.++.+.-+ +.++|..-+++|+...... .....+.+-+.+|..+|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455678889999999999998899999999999988888 9999999999998875432 2357788888899999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 000236 1721 DRGRSMFEGILSEYPK 1736 (1810)
Q Consensus 1721 e~Ar~lfe~al~~~P~ 1736 (1810)
+.||+-|+++-+.-.+
T Consensus 132 d~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 132 DAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHhHHHHHHhCCH
Confidence 9999999999665443
No 376
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.34 E-value=0.0094 Score=49.03 Aligned_cols=41 Identities=27% Similarity=0.299 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000236 1637 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1677 (1810)
Q Consensus 1637 i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~ 1677 (1810)
.|..++..|.+.|++++|..+|+++++.+|++..+|..+++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57777788888888888888888888888888888877764
No 377
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.019 Score=63.79 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=65.5
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcc----cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000236 1251 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY----VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325 (1810)
Q Consensus 1251 l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~----~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~ 1325 (1810)
-++||.|-|+|..+...+-.|+|+....|.+|++++.+.. ..+++..|.+||.|.++|..+|+ .+.+.|++|..
T Consensus 62 P~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~-~~~~~L~~k~~ 139 (239)
T COG1097 62 PEVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDFLRRKFENAEKDLRPFLNVGDLVYAKVVDVDR-DGEVELTLKDE 139 (239)
T ss_pred CCCCCEEEEEEEEEcccceEEEcCCccceEeehhhhhcccccccccccccccccCCEEEEEEEEccC-CCceEEEeecC
Confidence 3689999999999999999999998899999999996654 34678899999999999999995 88999999653
No 378
>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.003 Score=69.48 Aligned_cols=75 Identities=29% Similarity=0.528 Sum_probs=69.6
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeC-CceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecc
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1415 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l~~-~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~ 1415 (1810)
..++++|-+.|+.|.+.|+||.|-. .+++|++..||||..++..+.+..++|-.--+.|+.+|+++|-|.||.+.
T Consensus 14 Pev~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrr 89 (304)
T KOG2916|consen 14 PEVEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRR 89 (304)
T ss_pred CCcccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhcc
Confidence 3578999999999999999999853 38999999999999999999999999999999999999999999999876
No 379
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.5 Score=52.31 Aligned_cols=130 Identities=12% Similarity=0.026 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHh--cHHHHHHHHHHHHHhCCCCCh----
Q 000236 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKH---- 1703 (1810)
Q Consensus 1636 ~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~------~~~~~w~~~a~~~~~~--~~~~A~~ll~ralk~~p~~~~---- 1703 (1810)
+-|....+.|.+ .+.++|.+.+++++.+|. ...+.+..++++|..- ++++|...|+.|-..+...+.
T Consensus 75 t~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 75 TTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 444444444433 366666666666666553 2233444666666555 777788888887766644321
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHH------HHHHHHcCChHHHHHHHHHHHh
Q 000236 1704 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL-WSIY------LDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1704 ~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~l-w~~y------a~~e~k~gd~e~ar~lferal~ 1766 (1810)
-+.+++.|++-...+++.+|..+|++..+..-++.-+ |..- +.+++-..|.-.++..+++-..
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 2567777777777788888888888877665444332 3322 2223333555555555555554
No 380
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.27 E-value=0.073 Score=65.15 Aligned_cols=62 Identities=8% Similarity=-0.071 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHh-cHHHHHHHHHHHHHh
Q 000236 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV---WLRRVQRLLKQ-QQEGVQAVVQRALLS 1697 (1810)
Q Consensus 1636 ~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~---w~~~a~~~~~~-~~~~A~~ll~ralk~ 1697 (1810)
..|+.++..|...|+|++|...|++++...|++..+ |++++.+|..+ +.++|.+.|++|++.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999998865 99999999999 999999999999986
No 381
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.21 Score=56.57 Aligned_cols=69 Identities=13% Similarity=0.008 Sum_probs=55.1
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1698 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1698 ~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
.|.........+.|-+.++.|+++.|.+-|+.+++...-++-+-...+..+++.|+++.|..+...++.
T Consensus 138 lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 138 LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 454333567888888899999999999999999998888888877888888999999998876555444
No 382
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.23 E-value=0.37 Score=56.23 Aligned_cols=183 Identities=15% Similarity=0.097 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHhcCccchhh-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC------CC-------HHHHHHHHH
Q 000236 1578 EKARSIAERALQTINIREENE-KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------DP-------KKVHLALLG 1643 (1810)
Q Consensus 1578 d~Ar~v~eral~~~~~~~e~e-~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~------~~-------~~i~~~l~~ 1643 (1810)
-++.+.+.+|+..+...-+.+ ....+.+|++++..+.. ..-|.+++++. |. ......+++
T Consensus 57 g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~------l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~ 130 (518)
T KOG1941|consen 57 GRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK------LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGN 130 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHH
Confidence 333444445554444322222 23567788887654431 22344444433 21 256677888
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCC--------ChHHHHH
Q 000236 1644 LYERTEQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH--------KHIKFIS 1708 (1810)
Q Consensus 1644 ~~~~~g~~~~A~~~~e~~lk~~~~------~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~--------~~~~~~~ 1708 (1810)
.+.-.+.++++.+.|+.+++.... ...++..++.++.+. ++++|.-...+|....... .+..+.+
T Consensus 131 Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly 210 (518)
T KOG1941|consen 131 AHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY 210 (518)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence 888889999999999999985431 245788899999888 9999988888887654221 1234566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1709 QTAILEFKNGVADRGRSMFEGILSEY---PKR---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1709 ~~a~l~~~~g~~e~Ar~lfe~al~~~---P~~---~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
.+|-.+..+|..-.|.+..+.+.+.. .++ ..-...++|+|...||.++|..-||.|..
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 66667778888888888888886542 333 22467789999999999999999999987
No 383
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.075 Score=59.23 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=76.6
Q ss_pred CcccCCEEEEEEEEE---eCCeEEEEEcchhhcchhhHHhhhhhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeecccc
Q 000236 417 KFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 493 (1810)
Q Consensus 417 ~~~vG~~v~~rVl~v---~~~~i~ls~k~~l~~~~~~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~ 493 (1810)
.|..|+++.+.|... ..+.+.+- + .-..|- -+.|+++.|.|..+...|..|++++...+++|.|++
T Consensus 29 ty~~~~~iyssv~G~~~~~~~~v~VI--p--------l~g~Yi-P~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~ 97 (239)
T COG1097 29 TYFEGGKIYSSVVGLLDVKGKLVRVI--P--------LEGRYI-PEVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDF 97 (239)
T ss_pred cEecCCEEEEEEEeEEEEeCCEEEEE--e--------CCCccc-CCCCCEEEEEEEEEcccceEEEcCCccceEeehhhh
Confidence 566788888888766 23332221 1 111121 146999999999999999999998889999999999
Q ss_pred CCCC----CCCCCcCccCCCEEEEEEEEEeCCCCeEEEEEee
Q 000236 494 GLDP----GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531 (1810)
Q Consensus 494 ~~~~----~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~ 531 (1810)
-... ..+.+..|.+|+.|.|+|..+|+ .....|+++.
T Consensus 98 ~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~-~~~~~L~~k~ 138 (239)
T COG1097 98 LRRKFENAEKDLRPFLNVGDLVYAKVVDVDR-DGEVELTLKD 138 (239)
T ss_pred hcccccccccccccccccCCEEEEEEEEccC-CCceEEEeec
Confidence 4332 24566789999999999999998 5777888854
No 384
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.19 E-value=0.041 Score=58.92 Aligned_cols=95 Identities=20% Similarity=0.043 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000236 1605 AYFNLENEYGNPPEEAVVKVFQRALQYCDPK------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1678 (1810)
Q Consensus 1605 ~yl~le~~~g~~~~e~a~~vferAl~~~~~~------~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~ 1678 (1810)
.-.+-....| +.+.|..-|.+||..+|+- -+|...+..+.+.++.+.|.+-+.+++...|...++..+.|..
T Consensus 100 ~EGN~~F~ng--dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 100 KEGNELFKNG--DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHhhhcc--cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 3455555667 4588888899998888862 4555666666677777777777777777777666766677776
Q ss_pred HHHh-cHHHHHHHHHHHHHhCCCC
Q 000236 1679 LLKQ-QQEGVQAVVQRALLSLPRH 1701 (1810)
Q Consensus 1679 ~~~~-~~~~A~~ll~ralk~~p~~ 1701 (1810)
|.+. ++++|..-|.+.+..+|..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcch
Confidence 7666 7777777777777776655
No 385
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.15 E-value=2.5 Score=50.39 Aligned_cols=227 Identities=14% Similarity=0.110 Sum_probs=142.2
Q ss_pred HhcCCHHHHHHHHHHHHHhc---CccchhhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCC-------------
Q 000236 1572 LSMADVEKARSIAERALQTI---NIREENEKLNIWVAYFNLENEYG-NPPEEAVVKVFQRALQYCDP------------- 1634 (1810)
Q Consensus 1572 ~~~~~~d~Ar~v~eral~~~---~~~~e~e~~~lW~~yl~le~~~g-~~~~e~a~~vferAl~~~~~------------- 1634 (1810)
..+|+++.|...+.|+-... ++..-.+-..+....+......+ . .+.|...++||..+.+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~--~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDK--YEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 46799999999999988644 22211111233444444444444 4 48899999999988421
Q ss_pred --HHHHHHHHHHHHHhCCh---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCC-ChHHHH
Q 000236 1635 --KKVHLALLGLYERTEQN---KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH-KHIKFI 1707 (1810)
Q Consensus 1635 --~~i~~~l~~~~~~~g~~---~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~-~~~~~~ 1707 (1810)
..+...++..|...+.+ ++|..+.+.+.+.+++.+.++....+++.+. +.+++.+.+.+++...+.. ......
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 15667777788776654 4577777778888999999998888888888 9999999999999987632 234455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-----HcC---C---hHHHHHHHHHHH---hcCCCc
Q 000236 1708 SQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEI-----RLG---D---VDLIRGLFERAI---SLSLPP 1771 (1810)
Q Consensus 1708 ~~~a~l~~~~g~~e~Ar~lfe~al~~--~P~~~~lw~~ya~~e~-----k~g---d---~e~ar~lferal---~~~~~p 1771 (1810)
+.....+.... ...|...+..++.. .|...+ |..-+-+.. +.+ + ++.+..+++++- ...+.+
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 55554445444 34555566555532 444433 544433322 211 2 333444455332 223443
Q ss_pred hhHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1772 KKMK----FLFKKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1772 ~~~~----~lw~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
+... -+|+.-... .+.+++..|...|+-|+.
T Consensus 240 ~~~~a~~~LLW~~~~~~-~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKH-YKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHH
Confidence 3311 468775554 447899999999998874
No 386
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.12 E-value=0.023 Score=69.58 Aligned_cols=147 Identities=19% Similarity=0.268 Sum_probs=98.9
Q ss_pred hhhhhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeeccccCCCCCCCCCcCccCCCEEEEEEEEEeCCCCeEEEEEeeC
Q 000236 453 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 532 (1810)
Q Consensus 453 ~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~ 532 (1810)
.++++++.|..++|+|.++..||+||++...+.|++|.++++-. ..|.+|+.+-+.+..+-++++.+.+-....
T Consensus 115 c~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~~ 188 (715)
T COG1107 115 CTMEDVEAGKYYKGIVSRVEKYGVFVELNSHVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVGL 188 (715)
T ss_pred cchhhcccceeeeccccchhhhcceeecChhhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecCC
Confidence 56788899999999999999999999999999999999999842 248899999999999999888877665432
Q ss_pred CC----------Cccccccc--cCCCeE--EEEEEEEecC-cEEE-EEEecCceeEEEecccccC-cccccccccccccC
Q 000236 533 PT----------RVSEDDLV--KLGSLV--SGVVDVVTPN-AVVV-YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 595 (1810)
Q Consensus 533 ~~----------~~~~~~~~--~~G~iv--~g~V~~v~~~-g~~V-~l~~~~~~~g~i~~~~lsd-~~~~~~~~~~~~k~ 595 (1810)
.. +-.....+ .+|+.| .|.|+.+..+ |-.| .+ -.-.|+++..-+-. ....+| .+++
T Consensus 189 ~~Y~~~~~~ke~~r~~i~~id~~ig~tV~I~GeV~qikqT~GPTVFtl---tDetg~i~aAAFe~aGvRAyP----~Iev 261 (715)
T COG1107 189 DRYREVQVEKELPRTLIDDLDEMIGKTVRIEGEVTQIKQTSGPTVFTL---TDETGAIWAAAFEEAGVRAYP----EIEV 261 (715)
T ss_pred ccchhhhhhhhcccccHHHHHhhcCceEEEEEEEEEEEEcCCCEEEEE---ecCCCceehhhhccCCcccCC----CCCC
Confidence 20 00001111 478775 6889887543 4433 33 22345555444432 011111 4578
Q ss_pred CCeEeeEEEeecCCCeE
Q 000236 596 GYEFDQLLVLDNESSNL 612 (1810)
Q Consensus 596 G~~i~~vl~id~~~~~v 612 (1810)
|+.+..+=.++...+++
T Consensus 262 GdiV~ViG~V~~r~g~l 278 (715)
T COG1107 262 GDIVEVIGEVTRRDGRL 278 (715)
T ss_pred CceEEEEEEEeecCCcE
Confidence 99888544555555543
No 387
>PRK05054 exoribonuclease II; Provisional
Probab=96.12 E-value=0.014 Score=76.95 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=58.1
Q ss_pred CCC--CEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCcc---ccc--C-------cccCcCCCCEEEEEEEEeeCCCC
Q 000236 635 HPN--SVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDG---QRA--D-------LSKTYYVGQSVRSNILDVNSETG 699 (1810)
Q Consensus 635 ~~G--~~~~G~V~~i~~~G~fV~f~~-gv~Glv~~s~ls~~---~~~--~-------~~~~~~~Gq~V~~~V~~vd~~~~ 699 (1810)
++| +.+.|.|+.++++|+||++.+ ++.||+|.+.+.+. +.- + -...|++||.|+|+|.++|.+++
T Consensus 558 ~~G~~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~ 637 (644)
T PRK05054 558 KAGTDTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETR 637 (644)
T ss_pred ccCCCeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccC
Confidence 355 599999999999999999964 79999999999652 211 1 02469999999999999999999
Q ss_pred eEEEee
Q 000236 700 RITLSL 705 (1810)
Q Consensus 700 rl~lSl 705 (1810)
++.+.+
T Consensus 638 ~i~~~~ 643 (644)
T PRK05054 638 SIIARP 643 (644)
T ss_pred eEEEEE
Confidence 998764
No 388
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=96.06 E-value=0.013 Score=77.05 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=57.3
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCc--c-cc--c-C----c--ccccCCCCEEEEEEEEEecCCCeeEE
Q 000236 1344 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE--D-HV--D-N----I--ETIYRAGEKVKVKILKVDKEKRRISL 1411 (1810)
Q Consensus 1344 G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~--~-~~--~-~----~--~~~~~~G~~V~~~I~~id~~~~ri~l 1411 (1810)
|+.+.|.|..++.+|+||+|.+.+++|++|++.+.+ + +. . . + ...|+.||.|+++|.++|.++++|.+
T Consensus 558 ~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~~i~~ 637 (639)
T TIGR02062 558 NTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETRSIIA 637 (639)
T ss_pred CcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccCcEee
Confidence 458999999999999999998778999999999965 2 21 1 1 1 23699999999999999999999876
Q ss_pred e
Q 000236 1412 G 1412 (1810)
Q Consensus 1412 s 1412 (1810)
.
T Consensus 638 ~ 638 (639)
T TIGR02062 638 R 638 (639)
T ss_pred e
Confidence 3
No 389
>COG0557 VacB Exoribonuclease R [Transcription]
Probab=96.05 E-value=0.013 Score=78.46 Aligned_cols=76 Identities=33% Similarity=0.625 Sum_probs=65.4
Q ss_pred cCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccc-----------cCcccccCCCCEEEEEEEEEecCC
Q 000236 1338 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1406 (1810)
Q Consensus 1338 ~~~~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~-----------~~~~~~~~~G~~V~~~I~~id~~~ 1406 (1810)
+..-.+|+.+.|+|.+++.+|+||.|.+.+++|++|++.+.+.+. +.....|+.||.|++++.+++...
T Consensus 617 ~m~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~ 696 (706)
T COG0557 617 YMKKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDE 696 (706)
T ss_pred HHHHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEcccc
Confidence 446678999999999999999999999767999999999996432 223457999999999999999999
Q ss_pred CeeEEee
Q 000236 1407 RRISLGM 1413 (1810)
Q Consensus 1407 ~ri~lsl 1413 (1810)
++|.+++
T Consensus 697 ~~i~~~~ 703 (706)
T COG0557 697 RKIDFEL 703 (706)
T ss_pred cceEEEe
Confidence 9998875
No 390
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=96.01 E-value=0.018 Score=62.71 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=55.0
Q ss_pred CCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcc-cc-----------cCCCCCcccCCEEEEEEEEE--eC--Ce
Q 000236 372 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF-EI-----------VKPGKKFKVGAELVFRVLGV--KS--KR 435 (1810)
Q Consensus 372 ~~G~~v~g~V~~v~~~G~~V~~~~~v~g~vp~~~ls~~-~~-----------~~~~~~~~vG~~v~~rVl~v--~~--~~ 435 (1810)
-.|++++|.|+++++.|++|+++ .+++|||.+.+.+. .. .+.+..++.|+.|++||..+ +. -.
T Consensus 80 f~gEVv~g~V~~v~~~G~~v~~G-p~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~~~ 158 (176)
T PTZ00162 80 FKDEVLDAIVTDVNKLGFFAQAG-PLKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDASNLF 158 (176)
T ss_pred CCCCEEEEEEEEEecceEEEEee-CeEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCCCcE
Confidence 45999999999999999999996 78899999998742 11 11134588999999999998 22 35
Q ss_pred EEEEEcch
Q 000236 436 ITVTHKKT 443 (1810)
Q Consensus 436 i~ls~k~~ 443 (1810)
...|+|.-
T Consensus 159 ~i~T~~~~ 166 (176)
T PTZ00162 159 AIATINSD 166 (176)
T ss_pred EEEEecCC
Confidence 66677754
No 391
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=95.99 E-value=0.015 Score=72.08 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=57.4
Q ss_pred CCCCCcEEEEEEEEEeec--eEEEEEeCCceeEEEeccccCcc------------cccCcccccCCCCEEEEEEEEEecC
Q 000236 1340 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSED------------HVDNIETIYRAGEKVKVKILKVDKE 1405 (1810)
Q Consensus 1340 ~~~~G~~v~G~V~~i~~~--G~fV~l~~~~v~gl~~~sel~~~------------~~~~~~~~~~~G~~V~~~I~~id~~ 1405 (1810)
...+|++|.|+|+++.++ |+||+|+. +..|++|++++.+. ...+..+.+++||.|.|.|++--..
T Consensus 22 ~~~vGnIY~GrV~~i~p~l~aAFVdiG~-~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~Ke~~~ 100 (414)
T TIGR00757 22 RQLKGNIYKGRVTRILPSLQAAFVDIGL-EKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVKEPRG 100 (414)
T ss_pred cCCCCCEEEEEEeeecCCCceEEEEcCC-CceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEeeCCcC
Confidence 456899999999999998 99999986 88999999998653 2334566799999999999995433
Q ss_pred CCeeEEee
Q 000236 1406 KRRISLGM 1413 (1810)
Q Consensus 1406 ~~ri~lsl 1413 (1810)
.+.-.++.
T Consensus 101 ~Kgp~lT~ 108 (414)
T TIGR00757 101 NKGARLTT 108 (414)
T ss_pred CCCCeEEE
Confidence 44444433
No 392
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=95.97 E-value=0.039 Score=52.17 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=60.1
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000236 1252 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1324 (1810)
Q Consensus 1252 ~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~ 1324 (1810)
++||.|-|+|+.++..+-+|+|+....|.+|..++... .+..+..|++|+.|.|+|.++++ .....||...
T Consensus 5 ~~gD~VIG~V~~~~~~~~~VdI~s~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~-~~~~eLtc~~ 75 (86)
T cd05790 5 AKGDHVIGIVVAKAGDFFKVDIGGSEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANR-DMEPELSCVD 75 (86)
T ss_pred CCCCEEEEEEEEEcCCeEEEEcCCCcceEechHHcccc-cccccccCCCCCEEEEEEEecCC-CCCeEEEEeC
Confidence 58999999999999999999999889999999876543 34456679999999999999986 4568888865
No 393
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=95.94 E-value=0.013 Score=44.40 Aligned_cols=32 Identities=34% Similarity=0.733 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000236 1718 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1749 (1810)
Q Consensus 1718 g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~ 1749 (1810)
|+.++|+.+|++++...|.+.++|..|++++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 46778888888888888888888888887764
No 394
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=95.90 E-value=0.031 Score=49.56 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=36.2
Q ss_pred CcEEEEEEEEEeeceEEEEEcCCeEEEeeccccCCCCCCCCCcCccCCCEEEEEEEEEeCCCCeEEEEEe
Q 000236 461 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 530 (1810)
Q Consensus 461 g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k 530 (1810)
|++...+|+.+.++|+|++..++-.-|+|.+++. ..+++|+.|.+.|. .|.. +|+.+|++
T Consensus 2 G~~~~L~V~~~~~~g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~VFvY-~D~~-~rl~AT~k 61 (61)
T PF13509_consen 2 GQINTLKVVDKNEFGYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEVFVY-LDKE-GRLVATTK 61 (61)
T ss_dssp -------EEEE-SSEEEEEETT-EEEEEEGGG--------------TTSEEEEEEE-E-TT-S-EEEE--
T ss_pred CCCcceEEEEEeCCEEEEECCCCCEEEechHHcC--------CCCCCCCEEEEEEE-ECCC-CCEEEecC
Confidence 7888899999999999999877799999999985 24889999999776 4664 58878764
No 395
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=95.87 E-value=0.039 Score=52.20 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=60.7
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEEeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000236 1341 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1416 (1810)
Q Consensus 1341 ~~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri~lslk~~ 1416 (1810)
-++||.|-|+|+.+...+.+|.|.. ...|++|.+++... .++.+..|++||.|-|+|.++++. ..+.|++..+
T Consensus 4 P~~gD~VIG~V~~~~~~~~~VdI~s-~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~~-~~~eLtc~~~ 76 (86)
T cd05790 4 PAKGDHVIGIVVAKAGDFFKVDIGG-SEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANRD-MEPELSCVDS 76 (86)
T ss_pred CCCCCEEEEEEEEEcCCeEEEEcCC-CcceEechHHcccc-cccccccCCCCCEEEEEEEecCCC-CCeEEEEeCC
Confidence 4689999999999999999999985 68899999887543 344567899999999999999954 5678888653
No 396
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=95.84 E-value=0.022 Score=50.52 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=36.3
Q ss_pred CCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE-eCCeEEEEEc
Q 000236 373 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHK 441 (1810)
Q Consensus 373 ~G~~v~g~V~~v~~~G~~V~~~~~v~g~vp~~~ls~~~~~~~~~~~~vG~~v~~rVl~v-~~~~i~ls~k 441 (1810)
.|++.+.+|.++++.|++++.+++-+-++|..++. ..+++|++|.+ .+|. ..+|+..|+|
T Consensus 1 iG~~~~L~V~~~~~~g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~V-FvY~D~~~rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEFGYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEV-FVYLDKEGRLVATTK 61 (61)
T ss_dssp --------EEEE-SSEEEEEETT-EEEEEEGGG--------------TTSEEEE-EEEE-TTS-EEEE--
T ss_pred CCCCcceEEEEEeCCEEEEECCCCCEEEechHHcC--------CCCCCCCEEEE-EEEECCCCCEEEecC
Confidence 48999999999999999999987799999987653 35899999999 5566 5678888875
No 397
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.83 E-value=0.81 Score=50.04 Aligned_cols=194 Identities=13% Similarity=0.041 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHH
Q 000236 1598 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRV 1676 (1810)
Q Consensus 1598 e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a 1676 (1810)
||..+......++-..|- -.-||--|..|+...|.. .++.-++-.+...|+++.|.+.|...+...|...-+..+.+
T Consensus 63 eRA~l~fERGvlYDSlGL--~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 63 ERAQLLFERGVLYDSLGL--RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred HHHHHHHHhcchhhhhhH--HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 344444444455555663 367788888899888886 67777777778889999999999999888876666666655
Q ss_pred HHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 000236 1677 QRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM-FEGILSEYPKRTDLWSIYLDQEIRLGDV 1754 (1810)
Q Consensus 1677 ~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~l-fe~al~~~P~~~~lw~~ya~~e~k~gd~ 1754 (1810)
-.+.-- ++.-|.+-|..--+.+|+.....+|+.+... .-++.+|++- .+|+... +.+-|-.++--+. .|.+
T Consensus 141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~---k~dP~~A~tnL~qR~~~~---d~e~WG~~iV~~y-Lgki 213 (297)
T COG4785 141 IALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ---KLDPKQAKTNLKQRAEKS---DKEQWGWNIVEFY-LGKI 213 (297)
T ss_pred eeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh---hCCHHHHHHHHHHHHHhc---cHhhhhHHHHHHH-Hhhc
Confidence 444444 7777777777777777777655666655432 2356666553 3444332 2345544432221 2222
Q ss_pred HHHHHHHHHHHhcCCCchh---HHHHHHHHHHH---HHHcCCHHHHHHHHHHHHH
Q 000236 1755 DLIRGLFERAISLSLPPKK---MKFLFKKYLEY---EKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1755 e~ar~lferal~~~~~p~~---~~~lw~~yl~~---E~~~G~~~~a~~v~~rAl~ 1803 (1810)
....+|+|+.. ...++ +..+-..|..+ ....|+.++|..+|.-|+.
T Consensus 214 -S~e~l~~~~~a--~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 214 -SEETLMERLKA--DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred -cHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 23456777666 22222 22233333332 2335888888888877753
No 398
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=95.78 E-value=0.075 Score=56.73 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=77.4
Q ss_pred CCcccCCEEEEEEEEE---eCCeEEEEEcchhhcchhhHHhhhhhcCCCcEEEEEEEEEeeceEEEEEcC----------
Q 000236 416 KKFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN---------- 482 (1810)
Q Consensus 416 ~~~~vG~~v~~rVl~v---~~~~i~ls~k~~l~~~~~~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~---------- 482 (1810)
..|..|..|.|-+..+ +.+....+.++.... ..-.++|+++-|.|+++....+.|++.+
T Consensus 25 gt~~~~g~i~Aa~~G~~~~d~~n~~~~V~p~~~~--------~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~ 96 (188)
T COG1096 25 GTYEEGGEIRAAATGVVRRDDKNRVISVKPGKKT--------PPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELAT 96 (188)
T ss_pred CeEeECCEEEEeecccEEEcccceEEEeccCCCC--------CCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCCC
Confidence 3566677777766655 456666666654321 1224679999999999999899888751
Q ss_pred CeEEEeeccccCCCCCCCCCcCccCCCEEEEEEEEEeCCCCeEEEEEee
Q 000236 483 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 531 (1810)
Q Consensus 483 ~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~ 531 (1810)
...|-+|.|+++.....+.++.|++|+.|+++|++.- ..+.||.+-
T Consensus 97 ~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~~~Lst~~ 142 (188)
T COG1096 97 SGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DPIQLSTKG 142 (188)
T ss_pred CceeeEEEEecccccccccccccccccEEEEEEEecC---CCeEEEecC
Confidence 1457899999988777788899999999999999973 457777753
No 399
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.58 Score=54.11 Aligned_cols=151 Identities=15% Similarity=0.034 Sum_probs=106.9
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHH---HHHHHHHcC
Q 000236 1643 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQ---TAILEFKNG 1718 (1810)
Q Consensus 1643 ~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~---~a~l~~~~g 1718 (1810)
.-....+++.+|..+|..++...+.+.++-..|++++... +.+.|..+|... |...+-+.|.. ...++.+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHHHHHHHHHHHHHh
Confidence 3445688999999999999999999999999999999999 999998887663 33322223332 223333333
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000236 1719 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1798 (1810)
Q Consensus 1719 ~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~ 1798 (1810)
...+. .-+++.+..+|++.++-...++.+...|+.+.|...+-..+..+....+. ..-+..+++..-.|..+-+...+
T Consensus 218 ~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~-~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 218 ATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG-EARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred cCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc-HHHHHHHHHHHhcCCCCHHHHHH
Confidence 32222 24566678899999999999999999999999998888888755554444 46677788877777544433333
Q ss_pred H
Q 000236 1799 Q 1799 (1810)
Q Consensus 1799 ~ 1799 (1810)
.
T Consensus 296 R 296 (304)
T COG3118 296 R 296 (304)
T ss_pred H
Confidence 3
No 400
>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.012 Score=64.85 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=70.8
Q ss_pred CCCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCcCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000236 635 HPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 710 (1810)
Q Consensus 635 ~~G~~~~G~V~~i~~~G~fV~f~--~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~rl~lSlk~~~~ 710 (1810)
.+++++.+.|.+|.+.|++|.+. |++.|++-.|++|..++...+...++|-+=.|.|+.+|.++|=|-||.+...+
T Consensus 15 ev~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrrVs~ 92 (304)
T KOG2916|consen 15 EVEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRRVSP 92 (304)
T ss_pred CcccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhccCCH
Confidence 36899999999999999999985 79999999999999999999999999999999999999999999999876654
No 401
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=95.70 E-value=0.033 Score=66.73 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=74.9
Q ss_pred CcccCCEEEEEEEEEe-CCeEEEEEcchhhcc-----hhhHHhhhhhcCCCcEEEEEEEEEee-ceEEEEEcCCeEEEee
Q 000236 417 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKS-----KLAILSSYAEATDRLITHGWITKIEK-HGCFVRFYNGVQGFAP 489 (1810)
Q Consensus 417 ~~~vG~~v~~rVl~v~-~~~i~ls~k~~l~~~-----~~~~~~~~~~~~~g~~~~g~V~~i~~-~G~~V~~~~~v~g~vp 489 (1810)
.+++|+.++..+---+ .+...-+.|+.+... ....+..|.+ +.|+++.|+|.++.. .++||++ +++.|++|
T Consensus 90 ~~~vGd~i~~~i~~~~fgRiaaq~akq~i~Qkir~~er~~i~~ey~~-~~Geiv~g~V~r~~~~~~i~vdl-g~~ea~LP 167 (374)
T PRK12328 90 SVEIGDELTYELSLENMGRTAANTLFKELEYHIQRLLEESIFEKYKK-KVGKIVFGTVVRVDNEENTFIEI-DEIRAVLP 167 (374)
T ss_pred CCCCCCEEEEecChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEecCCCEEEEc-CCeEEEeC
Confidence 5899999987543222 222333444444221 0112233433 579999999999986 4699999 68999999
Q ss_pred ccccCCCCCCCCCcCccCCCEEEEEEEEEeCCCC---eEEEEEe
Q 000236 490 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR---RINLSFM 530 (1810)
Q Consensus 490 ~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~---~l~lS~k 530 (1810)
.++.. |.+.|++|+.++|.|.+++...+ .+.||..
T Consensus 168 ~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSRt 205 (374)
T PRK12328 168 MKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSRT 205 (374)
T ss_pred HHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEcC
Confidence 99884 55789999999999999998766 7888874
No 402
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=95.65 E-value=0.025 Score=70.13 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=50.6
Q ss_pred CCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEEcccCCCcc------------cCCccccCCCCcEEEEEEEE
Q 000236 1251 LSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSDGY------------VESPEKEFPIGKLVAGRVLS 1310 (1810)
Q Consensus 1251 l~~G~~v~G~V~~v~~~--G~fV~l~~~v~g~v~~s~ls~~~------------~~~~~~~f~~G~~V~~~Vl~ 1310 (1810)
..+|+++.|+|+++.++ |+||++|.+..||+|++|+.+.+ ..+..+.+++||.|.|.|+.
T Consensus 23 ~~vGnIY~GrV~~i~p~l~aAFVdiG~~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~K 96 (414)
T TIGR00757 23 QLKGNIYKGRVTRILPSLQAAFVDIGLEKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVK 96 (414)
T ss_pred CCCCCEEEEEEeeecCCCceEEEEcCCCceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEee
Confidence 45899999999999998 99999999999999999997532 22344568899999999865
No 403
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.65 E-value=0.8 Score=57.37 Aligned_cols=151 Identities=17% Similarity=0.090 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH------HH--h--cC-CCHHHHHHHHHHHHHh-cHHHHHHHHHHH------HH-
Q 000236 1636 KVHLALLGLYERTEQNKLADELLYKM------IK--K--FK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQRA------LL- 1696 (1810)
Q Consensus 1636 ~i~~~l~~~~~~~g~~~~A~~~~e~~------lk--~--~~-~~~~~w~~~a~~~~~~-~~~~A~~ll~ra------lk- 1696 (1810)
.+|-..+.+|++..++++|.+.|.+. +. + || .-.++--.++..+.+. +++.|...|-.| ++
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 56666677777888888888887652 22 2 22 1122233455555555 666665444321 11
Q ss_pred ------------hCC----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 000236 1697 ------------SLP----RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1760 (1810)
Q Consensus 1697 ------------~~p----~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~l 1760 (1810)
.+. +......|-..|+.|...|+++.|..+|-.+ ++...-++||-+.|..+.|..+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHH
Confidence 110 0111134555667777889999999998775 6677778888889999888888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000236 1761 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1798 (1810)
Q Consensus 1761 feral~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~ 1798 (1810)
-+.+.. | ...-.+|..-.+=..++|.+.+|+++|
T Consensus 814 a~e~~~---~-e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECHG---P-EATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhcC---c-hhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 777554 2 222234444444445677777776655
No 404
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.64 E-value=1.5 Score=54.03 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----
Q 000236 1666 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSE-YPKR---- 1737 (1810)
Q Consensus 1666 ~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~--~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~-~P~~---- 1737 (1810)
......|+.++....+. .++.|...+.++....+... .+.+.+.+|.+....|+..+|...++..+.. ..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 35678899999999988 99999999999887653321 3578889999999999999999999888872 1111
Q ss_pred -----------------------------HHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000236 1738 -----------------------------TDLWSIYLDQEIRL------GDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1782 (1810)
Q Consensus 1738 -----------------------------~~lw~~ya~~e~k~------gd~e~ar~lferal~~~~~p~~~~~lw~~yl 1782 (1810)
..++..++.+.... ++.+.+...|..|+. +.|...+ .|..|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k-~~~~~a 299 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEK-AWHSWA 299 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHH-HHHHHH
Confidence 22566666666666 888999999999998 7777664 777777
Q ss_pred HHHHH
Q 000236 1783 EYEKS 1787 (1810)
Q Consensus 1783 ~~E~~ 1787 (1810)
.+..+
T Consensus 300 ~~~~~ 304 (352)
T PF02259_consen 300 LFNDK 304 (352)
T ss_pred HHHHH
Confidence 76443
No 405
>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]
Probab=95.61 E-value=0.012 Score=77.07 Aligned_cols=80 Identities=29% Similarity=0.358 Sum_probs=72.2
Q ss_pred ccCCCCCEEEEEEEEEeece---EEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000236 1249 EDLSPNMIVQGYVKNVTSKG---CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1325 (1810)
Q Consensus 1249 ~~l~~G~~v~G~V~~v~~~G---~fV~l~~~v~g~v~~s~ls~~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~ 1325 (1810)
+.+.+|.+|.+.|++|+..- +-|.+..|++|+++.+++|+..+.+|...+++||.|.|+|+++|.++=.+.||.|.+
T Consensus 981 et~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~s 1060 (1299)
T KOG1856|consen 981 ETFYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTS 1060 (1299)
T ss_pred hHhccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhH
Confidence 34789999999999997654 567889999999999999999899999999999999999999999988999999987
Q ss_pred ccc
Q 000236 1326 DSR 1328 (1810)
Q Consensus 1326 ~~~ 1328 (1810)
...
T Consensus 1061 dlk 1063 (1299)
T KOG1856|consen 1061 DLK 1063 (1299)
T ss_pred Hhh
Confidence 753
No 406
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=95.59 E-value=0.13 Score=52.62 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000236 1737 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1800 (1810)
Q Consensus 1737 ~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~r 1800 (1810)
-..+|..|+++. +..+.+|..+.+...-.+.+ .+|..|+.+.+..|+..+|.++|++
T Consensus 68 yLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~A-lfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 68 YLKIWLKYADNC------DEPRELFQFLYSKGIGTKLA-LFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 345788888763 33577788877766665555 6888888888888888888888875
No 407
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.51 E-value=0.96 Score=54.84 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hcCc---cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-cC-
Q 000236 1559 NSSFVWIKYMAFMLSMADVEKARSIAERALQ-TINI---REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ-YC- 1632 (1810)
Q Consensus 1559 ~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~-~~~~---~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~-~~- 1632 (1810)
+++....--.+++...|++.+|...+-+.-- ..+. ..+--+-..|..+.-++.+++.| ..+...|.+|++ .+
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y--~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY--QASSVLFLKALRNSCS 315 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH--HHHHHHHHHHHHHHHH
Confidence 5555555566777788888888877644211 0010 00000124566666666677754 888999999996 21
Q ss_pred -------CC----------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 000236 1633 -------DP----------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1682 (1810)
Q Consensus 1633 -------~~----------~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~ 1682 (1810)
+. ..+.+..+-.|...|++-.|.+.|.++.+.|..++.+|+++|++.+..
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 11 177788888999999999999999999999999999999999988653
No 408
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.51 E-value=0.016 Score=44.65 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=31.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 000236 1550 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1582 (1810)
Q Consensus 1550 fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~ 1582 (1810)
|+++|..+|+++..|..|+.++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999973
No 409
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.49 E-value=1.1 Score=52.53 Aligned_cols=235 Identities=14% Similarity=0.052 Sum_probs=137.9
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHH
Q 000236 1571 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLG 1643 (1810)
Q Consensus 1571 ~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-------~i~~~l~~ 1643 (1810)
+....++.++..+-...+.....+...........+.+.+..++ ..+++.+.|+.|+++.... .++..++.
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls--~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs 170 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLS--VFQKALESFEKALRYAHNNDDAMLELQVCVSLGS 170 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHH--HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH
Confidence 33444555555555444432211111111233444555556666 4689999999999886431 89999999
Q ss_pred HHHHhCChHHHHHHHHHHHHhcC----CC------HHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCC----CCChHHHHH
Q 000236 1644 LYERTEQNKLADELLYKMIKKFK----HS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP----RHKHIKFIS 1708 (1810)
Q Consensus 1644 ~~~~~g~~~~A~~~~e~~lk~~~----~~------~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p----~~~~~~~~~ 1708 (1810)
+|.+..++++|.-...++..... .+ .-+.++++..+..+ ..-.|.+..+.|.+..- ..-+...+.
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 99999999999877777665331 12 22344555555555 66777777777665421 122346678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC---CC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHhc--CCCchhH-
Q 000236 1709 QTAILEFKNGVADRGRSMFEGILSEYP---KR---TDLWSIYLDQEIR-----LGDVDLIRGLFERAISL--SLPPKKM- 1774 (1810)
Q Consensus 1709 ~~a~l~~~~g~~e~Ar~lfe~al~~~P---~~---~~lw~~ya~~e~k-----~gd~e~ar~lferal~~--~~~p~~~- 1774 (1810)
-+|.+|...|+.|+|-.-||.|+.... ++ ..+..-.+..... .+.--+|.+.-+|++.. ..-.+-.
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~v 330 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSV 330 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHH
Confidence 899999999999999999999976542 22 1122222222211 11113455555565541 0111111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000236 1775 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807 (1810)
Q Consensus 1775 ~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~~ 1807 (1810)
..+.-+...+.+..|..++-+.-+.||-+.++.
T Consensus 331 lK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e 363 (518)
T KOG1941|consen 331 LKLHCRLASIYRSKGLQDELRAHVVRAHECVEE 363 (518)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 013334445566778888888888888777764
No 410
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=95.45 E-value=0.037 Score=51.78 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=41.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEeC------------------CCcEEEEEcccCCCcccC--CccccCCCCcEEEEEEEEE
Q 000236 1252 SPNMIVQGYVKNVTSKGCFIMLS------------------RKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSV 1311 (1810)
Q Consensus 1252 ~~G~~v~G~V~~v~~~G~fV~l~------------------~~v~g~v~~s~ls~~~~~--~~~~~f~~G~~V~~~Vl~v 1311 (1810)
++|++|.|+|++++..-++++|- ....|.++.+|+.....+ ++.+.|++||.|+++|+++
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ViSl 82 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVISL 82 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEeeC
Confidence 58999999999999998888652 245789999998765544 3678899999999999874
No 411
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.35 E-value=0.037 Score=51.82 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1705 KFISQTAILEFKNGVADRGRSMFEGILSE---YPK-R---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1705 ~~~~~~a~l~~~~g~~e~Ar~lfe~al~~---~P~-~---~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
.++..+|.++..+|++++|...|+++++. .+. . ...+..++.++...|++++|...|++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677777777777777777777777643 232 1 22466667777777777777777777765
No 412
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.30 E-value=0.25 Score=52.55 Aligned_cols=105 Identities=13% Similarity=0.184 Sum_probs=75.4
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhcHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000236 1643 GLYERTEQNKLADELLYKMIKKFKHSC------KVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1716 (1810)
Q Consensus 1643 ~~~~~~g~~~~A~~~~e~~lk~~~~~~------~~w~~~a~~~~~~~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~ 1716 (1810)
......+....+.+.+++++..|.... .-|. ...+..|++.. ..++..++..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~-----------~~~r~~l~~~~--------~~~~~~l~~~~~~ 74 (146)
T PF03704_consen 14 RAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWV-----------EPERERLRELY--------LDALERLAEALLE 74 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTH-----------HHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHH-----------HHHHHHHHHHH--------HHHHHHHHHHHHh
Confidence 334556778888888888888774221 1222 22222233321 3567778888889
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1717 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1717 ~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
.|++++|..++++++..+|-+..+|..++..+...|+...|...|+++..
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998776
No 413
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=95.27 E-value=0.042 Score=72.47 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=55.3
Q ss_pred CCEEEEEEEEEecCeEEEEEC-CCeEEEeeCCccCc--c-cc--cCc-------ccCcCCCCEEEEEEEEeeCCCCeEEE
Q 000236 637 NSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVD--G-QR--ADL-------SKTYYVGQSVRSNILDVNSETGRITL 703 (1810)
Q Consensus 637 G~~~~G~V~~i~~~G~fV~f~-~gv~Glv~~s~ls~--~-~~--~~~-------~~~~~~Gq~V~~~V~~vd~~~~rl~l 703 (1810)
|..+.|.|+.++++|+||++. +|+.||+|.+.+.+ . +. .+. ...|++||.|+++|.++|.+++++.+
T Consensus 558 ~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~~i~~ 637 (639)
T TIGR02062 558 NTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETRSIIA 637 (639)
T ss_pred CcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccCcEee
Confidence 458999999999999999994 68999999999965 2 21 111 12599999999999999999998865
Q ss_pred e
Q 000236 704 S 704 (1810)
Q Consensus 704 S 704 (1810)
.
T Consensus 638 ~ 638 (639)
T TIGR02062 638 R 638 (639)
T ss_pred e
Confidence 3
No 414
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.17 Score=57.26 Aligned_cols=144 Identities=17% Similarity=0.108 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Q 000236 1619 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1696 (1810)
Q Consensus 1619 e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk 1696 (1810)
+.|.++...-.+..|.. -....++-.|....++..|.+.|+++...+|...+..+-+++-+.+. .+..|.+....+..
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 66777777777777744 56667777888999999999999999999998888888899988888 88999888777654
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1697 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1697 ~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
. |. -+......-+-+.+..+|+.-+|.+.++.-. ....+..+..+=+.++.|+++.|..-|..|+.
T Consensus 107 ~-~~-L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 107 N-PA-LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred C-HH-HHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 3 11 1123333334455677899999988877421 14567777778888899999999999999998
No 415
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.19 E-value=0.84 Score=57.21 Aligned_cols=184 Identities=12% Similarity=0.049 Sum_probs=89.0
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHH-HH---HHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 000236 1555 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NI---WVAYFNLENEYGNPPEEAVVKVFQRALQ 1630 (1810)
Q Consensus 1555 ~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~-~l---W~~yl~le~~~g~~~~e~a~~vferAl~ 1630 (1810)
..+| .+.+|..++.+.++.-+++-|..+|-|+-. .+.-.-..|+ .+ -++.+..---+|+ .++|.++|-.|=+
T Consensus 687 EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gik~vkrl~~i~s~~~q~aei~~~~g~--feeaek~yld~dr 762 (1189)
T KOG2041|consen 687 EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGIKLVKRLRTIHSKEQQRAEISAFYGE--FEEAEKLYLDADR 762 (1189)
T ss_pred hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccchhHHHHhhhhhhHHHHhHhHhhhhcc--hhHhhhhhhccch
Confidence 4455 489999999999999999999999988753 1110000000 00 0111222223453 3666666654432
Q ss_pred cCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHH
Q 000236 1631 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFI 1707 (1810)
Q Consensus 1631 ~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~--~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~ 1707 (1810)
..-.-.++..+++. -...+++...-.- ...-..+|..++.....+ .+++|.+.|..+-. .
T Consensus 763 rDLAielr~klgDw-------frV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------~ 825 (1189)
T KOG2041|consen 763 RDLAIELRKKLGDW-------FRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----------T 825 (1189)
T ss_pred hhhhHHHHHhhhhH-------HHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------h
Confidence 22211333322221 1222222111000 011245666777766666 77777777766311 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000236 1708 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1763 (1810)
Q Consensus 1708 ~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lfer 1763 (1810)
-.++..++...+++. +|.+....|.+..+.-.++++..+.|--++|...|-|
T Consensus 826 e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 223333333333332 3344445555555555566665555555555554433
No 416
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=95.18 E-value=0.22 Score=50.92 Aligned_cols=25 Identities=4% Similarity=0.074 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHH
Q 000236 1738 TDLWSIYLDQEIRLGDVDLIRGLFE 1762 (1810)
Q Consensus 1738 ~~lw~~ya~~e~k~gd~e~ar~lfe 1762 (1810)
..+|..||.++...|++.+|..+|+
T Consensus 99 AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 99 ALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3345555555555555555555544
No 417
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=1.2 Score=49.46 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHh-CChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHh
Q 000236 1617 PEEAVVKVFQRALQYCDPK-------KVHLALLGLYERT-EQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ 1682 (1810)
Q Consensus 1617 ~~e~a~~vferAl~~~~~~-------~i~~~l~~~~~~~-g~~~~A~~~~e~~lk~~~~------~~~~w~~~a~~~~~~ 1682 (1810)
++++|...+++|++..-.. +.++.++.+|+.. .++++|...|+.+-.-|.. ..+.++..+++-.+.
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 4588888888888776431 6678889999877 8899999999999877742 346677778877777
Q ss_pred -cHHHHHHHHHHHHHhCCCCCh----H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000236 1683 -QQEGVQAVVQRALLSLPRHKH----I-KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1739 (1810)
Q Consensus 1683 -~~~~A~~ll~ralk~~p~~~~----~-~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~ 1739 (1810)
++.+|..+|++....--.+.- + ..++.-+..++-..|.=.++..+++....+|...+
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 999999999986654333311 1 23333444445557888888888888888998655
No 418
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.07 E-value=0.56 Score=52.54 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHh-cH
Q 000236 1617 PEEAVVKVFQRALQYCDPK-----KVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQ 1684 (1810)
Q Consensus 1617 ~~e~a~~vferAl~~~~~~-----~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~------~~~~~w~~~a~~~~~~-~~ 1684 (1810)
.+++|..-|++.++.-+.. ....+++.++.+.+++.+-.+.|.+++.-.+ .+.+.......+.... +.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 3577888888888887653 6667788899999999999999988875321 3445555555655555 77
Q ss_pred HHHHHHHHHHHHhCCCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HH---HHHHHHHHH
Q 000236 1685 EGVQAVVQRALLSLPRHKHIKFI----SQTAILEFKNGVADRGRSMFEGILSEYPKR---------TD---LWSIYLDQE 1748 (1810)
Q Consensus 1685 ~~A~~ll~ralk~~p~~~~~~~~----~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~---------~~---lw~~ya~~e 1748 (1810)
+-....|+..|+.+...+.-.+| .+++.+++..+++-+-..++.++-+++.+. .. ++..-++++
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 77777888777665443333455 468888888888888888888877665331 23 444446777
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 000236 1749 IRLGDVDLIRGLFERAISL 1767 (1810)
Q Consensus 1749 ~k~gd~e~ar~lferal~~ 1767 (1810)
..+.+-.....+|++++..
T Consensus 202 T~qKnNKkLK~lYeqalhi 220 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHI 220 (440)
T ss_pred hhhcccHHHHHHHHHHHHh
Confidence 7888888899999999983
No 419
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=1 Score=52.12 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=89.5
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e 1619 (1810)
.++.+++...|..++...|.++.+-..|+.+++..|+.+.|..++.... ......+...-.+.+.+..+.... .
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP----~~~~~~~~~~l~a~i~ll~qaa~~--~ 220 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP----LQAQDKAAHGLQAQIELLEQAAAT--P 220 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc----ccchhhHHHHHHHHHHHHHHHhcC--C
Confidence 4568899999999999999999999999999999999999999887544 322222222223356666665532 2
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhc
Q 000236 1620 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKF 1665 (1810)
Q Consensus 1620 ~a~~vferAl~~~~~-~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~ 1665 (1810)
. ...+++.+..+|. .+.-+.++..|...|++++|.+.+-.++++.
T Consensus 221 ~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 E-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred C-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 2346666677775 4999999999999999999998888888765
No 420
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.90 E-value=0.08 Score=49.50 Aligned_cols=28 Identities=14% Similarity=0.092 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 000236 1636 KVHLALLGLYERTEQNKLADELLYKMIK 1663 (1810)
Q Consensus 1636 ~i~~~l~~~~~~~g~~~~A~~~~e~~lk 1663 (1810)
.+|..++.+|...|++++|...|++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555566666666666666665554
No 421
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=2.6 Score=47.58 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhC----CCCChHHHHHHH
Q 000236 1637 VHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL----PRHKHIKFISQT 1710 (1810)
Q Consensus 1637 i~~~l~~~~~~~g~~~~A~~~~e~~lk~~-~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~----p~~~~~~~~~~~ 1710 (1810)
+.+.|++++.-.+.|.-...+|.+.++++ +..+.+-..++.+.++. +.+.|...|++.-+.. ......-+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33456667777888999999999999988 57778888899999999 9999999999654432 112224566677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH-HHHHHHHHHHHHcC
Q 000236 1711 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK-FLFKKYLEYEKSVG 1789 (1810)
Q Consensus 1711 a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~-~lw~~yl~~E~~~G 1789 (1810)
|.++.-.+++..|...|.+++..+|.++...+.-|.+.+-.|+...|....+.++.....+.-.. .+++..--+|-.+-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys 338 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYS 338 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhh
Confidence 77777788999999999999999999999998888888889999999999999998322121111 34445555566665
Q ss_pred CHHHHHHHHHHH
Q 000236 1790 EEERIEYVKQKA 1801 (1810)
Q Consensus 1790 ~~~~a~~v~~rA 1801 (1810)
+..+.+.....|
T Consensus 339 ~~~~~k~~l~~~ 350 (366)
T KOG2796|consen 339 RSMQKKQALLEA 350 (366)
T ss_pred hhhhHHHHHHHH
Confidence 555544444433
No 422
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.83 E-value=0.03 Score=43.17 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=22.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 000236 1727 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1758 (1810)
Q Consensus 1727 fe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar 1758 (1810)
|+++++.+|++..+|..++.++...|+.++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56667777777777777777777777776665
No 423
>COG0557 VacB Exoribonuclease R [Transcription]
Probab=94.78 E-value=0.063 Score=72.11 Aligned_cols=72 Identities=22% Similarity=0.324 Sum_probs=61.2
Q ss_pred CCCCCEEEEEEEEEecCeEEEEECCC-eEEEeeCCccCcccc-c----------CcccCcCCCCEEEEEEEEeeCCCCeE
Q 000236 634 IHPNSVVHGYVCNIIETGCFVRFLGR-LTGFAPRSKAVDGQR-A----------DLSKTYYVGQSVRSNILDVNSETGRI 701 (1810)
Q Consensus 634 ~~~G~~~~G~V~~i~~~G~fV~f~~g-v~Glv~~s~ls~~~~-~----------~~~~~~~~Gq~V~~~V~~vd~~~~rl 701 (1810)
-++|..+.|+|++++.+|+||++++. +.|++|.+.+...+. - .....|+.||.|+++|.+++...+++
T Consensus 620 ~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~~~i 699 (706)
T COG0557 620 KRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDERKI 699 (706)
T ss_pred HhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEcccccce
Confidence 36899999999999999999999875 999999999985322 1 12336999999999999999999999
Q ss_pred EEee
Q 000236 702 TLSL 705 (1810)
Q Consensus 702 ~lSl 705 (1810)
.+++
T Consensus 700 ~~~~ 703 (706)
T COG0557 700 DFEL 703 (706)
T ss_pred EEEe
Confidence 8875
No 424
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.75 E-value=1.8 Score=53.34 Aligned_cols=174 Identities=18% Similarity=0.177 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHH
Q 000236 1617 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1694 (1810)
Q Consensus 1617 ~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ra 1694 (1810)
+.++-.+..++||+.+|.- ..|+-++. +.+....+|.++|+++++... ...+. +..+...-+-.+
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE-----------~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGE-----------ASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH-----------Hhhchhhhhhcccchhhh
Confidence 3466677778888777653 55554442 234556778888888776421 11111 000000001011
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 000236 1695 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1772 (1810)
Q Consensus 1695 lk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~--~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~ 1772 (1810)
+..-..+..+-+-..+|....+.|+.++|.++|+.+++.+|. ...+...++..+...+.++++.+++.+--. ..-|+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD-i~lpk 328 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD-ISLPK 328 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc-ccCCc
Confidence 111111212234455666677888888888888888888775 344677777777888888888888877533 22234
Q ss_pred hHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q 000236 1773 KMKFLFKKYLEYEKSVGE---------------EERIEYVKQKAMEY 1804 (1810)
Q Consensus 1773 ~~~~lw~~yl~~E~~~G~---------------~~~a~~v~~rAl~~ 1804 (1810)
.+-.-|.+-+---+..|| ...|.+...||.++
T Consensus 329 SAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 329 SATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred hHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 443345554432222332 22355677777765
No 425
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.58 E-value=1 Score=57.74 Aligned_cols=149 Identities=17% Similarity=0.112 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHhcCCCH--------HHHHHHHH-HHH---HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-c
Q 000236 1617 PEEAVVKVFQRALQYCDPK--------KVHLALLG-LYE---RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1683 (1810)
Q Consensus 1617 ~~e~a~~vferAl~~~~~~--------~i~~~l~~-~~~---~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~ 1683 (1810)
+.+...+.+.++.+...-. -.|...+. ++- .....+.|.++++.+.++||++.-..+..|+++... +
T Consensus 203 dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~ 282 (468)
T PF10300_consen 203 DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGN 282 (468)
T ss_pred cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 6788899999998755432 11111111 111 245678899999999999998777777778888777 9
Q ss_pred HHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHcCCh-----
Q 000236 1684 QEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL--DQEIRLGDV----- 1754 (1810)
Q Consensus 1684 ~~~A~~ll~ralk~~p~~~--~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya--~~e~k~gd~----- 1754 (1810)
.++|.+.|++|+..-...+ +.-.+..++..++-+.++++|...|.++++.+.-+ ..+..|+ -++...|+.
T Consensus 283 ~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-ka~Y~Y~~a~c~~~l~~~~~~~~ 361 (468)
T PF10300_consen 283 LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-KAFYAYLAAACLLMLGREEEAKE 361 (468)
T ss_pred HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHhhccchhhhh
Confidence 9999999999885322211 12457777777888899999999999999866654 4444443 345567777
Q ss_pred --HHHHHHHHHHHh
Q 000236 1755 --DLIRGLFERAIS 1766 (1810)
Q Consensus 1755 --e~ar~lferal~ 1766 (1810)
++|..+|.++-.
T Consensus 362 ~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 362 HKKEAEELFRKVPK 375 (468)
T ss_pred hHHHHHHHHHHHHH
Confidence 888888888776
No 426
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=94.56 E-value=0.035 Score=41.39 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000236 1754 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1786 (1810)
Q Consensus 1754 ~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~ 1786 (1810)
+++||.+|+|.+. ..|. . ..|.+|+.||+
T Consensus 3 ~dRAR~IyeR~v~--~hp~-~-k~WikyAkFEe 31 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPE-V-KNWIKYAKFEE 31 (32)
T ss_pred HHHHHHHHHHHHH--hCCC-c-hHHHHHHHhhc
Confidence 4555555555555 3332 2 25555555553
No 427
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.52 E-value=2.2 Score=50.83 Aligned_cols=185 Identities=15% Similarity=0.113 Sum_probs=111.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCccchhhHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--------------
Q 000236 1571 MLSMADVEKARSIAERALQTINIREENEKL-NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------------- 1635 (1810)
Q Consensus 1571 ~~~~~~~d~Ar~v~eral~~~~~~~e~e~~-~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-------------- 1635 (1810)
+.+.|+.......|+.|++. .. +|..-+ .+|.++.+.+.. ..-|++|+++....
T Consensus 27 Lck~gdcraGv~ff~aA~qv-GT-eDl~tLSAIYsQLGNAyfy---------L~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQV-GT-EDLSTLSAIYSQLGNAYFY---------LKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHhccchhhhHHHHHHHHHh-cc-hHHHHHHHHHHHhcchhhh---------HhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 45668888888889888853 22 221111 233344444333 44455666655322
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHh-c-------------HHHHHHHHHHHH
Q 000236 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-Q-------------QEGVQAVVQRAL 1695 (1810)
Q Consensus 1636 ~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~------~~~~~w~~~a~~~~~~-~-------------~~~A~~ll~ral 1695 (1810)
+.--.+++.+.-.|.|++|.-...+-+.... ....++|+++..|... + .+++...|++|.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 2333455677788889988877777654321 2356788888887654 2 355666666666
Q ss_pred HhCCCCC-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHH---HHHHHHHHHHHcCChHHHH
Q 000236 1696 LSLPRHK-----------HIKFISQTAILEFKNGVADRGRSMFEGIL---SEYPKRTD---LWSIYLDQEIRLGDVDLIR 1758 (1810)
Q Consensus 1696 k~~p~~~-----------~~~~~~~~a~l~~~~g~~e~Ar~lfe~al---~~~P~~~~---lw~~ya~~e~k~gd~e~ar 1758 (1810)
+.+-.+- .-.++-.++..|+-.|+++.|....+.-| +.+.++.. ++..++..++-.|+++.|.
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ 255 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI 255 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH
Confidence 5442210 00233334444566788888877766544 33555544 4566667777889999999
Q ss_pred HHHHHHHh
Q 000236 1759 GLFERAIS 1766 (1810)
Q Consensus 1759 ~lferal~ 1766 (1810)
..|.+++.
T Consensus 256 ehYK~tl~ 263 (639)
T KOG1130|consen 256 EHYKLTLN 263 (639)
T ss_pred HHHHHHHH
Confidence 99988876
No 428
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=1.6 Score=48.79 Aligned_cols=142 Identities=9% Similarity=0.060 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC------CHHHHHHHH
Q 000236 1603 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH------SCKVWLRRV 1676 (1810)
Q Consensus 1603 W~~yl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~------~~~~w~~~a 1676 (1810)
+..-..+|...| +++.|-..++||-+. ....++++|.++|++++..+.. ..+.+-..+
T Consensus 94 ~eKAs~lY~E~G--spdtAAmaleKAak~--------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECG--SPDTAAMALEKAAKA--------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhC--CcchHHHHHHHHHHH--------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 334444555556 335555555555433 2344555566666655554421 123333444
Q ss_pred HHHHHh-cHHHHHHHHHH----HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHH
Q 000236 1677 QRLLKQ-QQEGVQAVVQR----ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY----PKRTDLWSIYLDQ 1747 (1810)
Q Consensus 1677 ~~~~~~-~~~~A~~ll~r----alk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~----P~~~~lw~~ya~~ 1747 (1810)
..+.+. ++.+|-..|.+ +++........+.++....++.-..|+-.|..+|+..-+.. |.+......++..
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 555555 66666555544 12221112223455555555555567777777777654332 1222233333333
Q ss_pred HHHcCChHHHHHHH
Q 000236 1748 EIRLGDVDLIRGLF 1761 (1810)
Q Consensus 1748 e~k~gd~e~ar~lf 1761 (1810)
+ ..||.+.+..++
T Consensus 238 y-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKVL 250 (308)
T ss_pred h-ccCCHHHHHHHH
Confidence 2 456666655544
No 429
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.42 E-value=0.13 Score=59.13 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=87.1
Q ss_pred HHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000236 1674 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1752 (1810)
Q Consensus 1674 ~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~g 1752 (1810)
..++-|+++ +|++|..+|.+++...|-+. -++.+-|..|+++..+..|..-++.|+..+-.-..+++.-+..-..+|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~Np--V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNP--VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCc--cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 456678889 99999999999999999763 577888888888888888888888888777665667777777777889
Q ss_pred ChHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000236 1753 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1784 (1810)
Q Consensus 1753 d~e~ar~lferal~~~~~p~~~~~lw~~yl~~ 1784 (1810)
...+|..-+|++|. +.|+.. .+-+.|.++
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~~-ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKNI-ELKKSLARI 208 (536)
T ss_pred hHHHHHHhHHHHHh--hCcccH-HHHHHHHHh
Confidence 99999999999999 777766 577776654
No 430
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.95 Score=50.87 Aligned_cols=131 Identities=11% Similarity=0.045 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----C---HHH
Q 000236 1565 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD----P---KKV 1637 (1810)
Q Consensus 1565 ~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~----~---~~i 1637 (1810)
+-|+.++...+++.-....+...++..|.. ...+-.+++.+..+.| +.+.|...|++.-+.+. . ..+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~----~p~L~s~Lgr~~MQ~G--D~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQ----EPQLLSGLGRISMQIG--DIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcc----cHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 446677778888888888888888755432 2467788888888999 77888888886543332 1 256
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCC
Q 000236 1638 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1701 (1810)
Q Consensus 1638 ~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~ 1701 (1810)
..+.+.+|.-++++.+|...|.+++...+.++.+-...|-+++-. +...|.+.++.++...|.+
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 777777888888888888888888888888888888888877777 8888888888888888875
No 431
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=94.32 E-value=0.13 Score=62.58 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=58.1
Q ss_pred cCCCEEEEEEEEEeeCcCeEEEEeC----C-ceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeec
Q 000236 1133 HEGDIVGGRISKILSGVGGLVVQIG----P-HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1207 (1810)
Q Consensus 1133 ~~G~~v~g~V~~i~~~~~g~~V~l~----~-~~~G~i~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~~~~ 1207 (1810)
+.|++++|+|.++... +++|+++ . +.+|++|..|.. |.+.|++|+.|+|+|.++..
T Consensus 151 ~~GeIV~G~V~r~e~~--~viv~l~~~~g~~~~EaiLP~~Eqi-----------------p~E~y~~Gdrika~i~~V~~ 211 (449)
T PRK12329 151 LEDTVLTARVLRFERQ--SVIMAVSSGFGQPEVEAELPKREQL-----------------PNDNYRANATFKVFLKEVSE 211 (449)
T ss_pred hcCcEEEEEEEEEcCC--CEEEEecccCCCcceEEEecHHHcC-----------------CCCcCCCCCEEEEEEEEeec
Confidence 3899999999999888 9999993 2 389999987751 77899999999999999987
Q ss_pred CC-CCcceEEEeeccc
Q 000236 1208 TV-RGTFHVELSLRSS 1222 (1810)
Q Consensus 1208 ~~-~g~~~l~lS~r~~ 1222 (1810)
.. +| ..+.||+..+
T Consensus 212 ~~~kG-pqIilSRt~p 226 (449)
T PRK12329 212 GPRRG-PQLFVSRANA 226 (449)
T ss_pred CCCCC-CEEEEEcCCH
Confidence 53 43 5789997555
No 432
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.28 E-value=2 Score=52.35 Aligned_cols=161 Identities=13% Similarity=0.092 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHH---hCChHHHHHHHHHHH-HhcCCCHHHH
Q 000236 1602 IWVAYFNLENEYGNPPEEAVVKVFQRALQYC-----DPKKVHLALLGLYER---TEQNKLADELLYKMI-KKFKHSCKVW 1672 (1810)
Q Consensus 1602 lW~~yl~le~~~g~~~~e~a~~vferAl~~~-----~~~~i~~~l~~~~~~---~g~~~~A~~~~e~~l-k~~~~~~~~w 1672 (1810)
+-+.++--+..... .+...++++..-..- ...++-..|+-.+-+ .|+.++|.+++..++ +..+.++++|
T Consensus 143 iv~~lllSyRdiqd--ydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 143 IVINLLLSYRDIQD--YDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred HHHHHHHHhhhhhh--HHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 33444444444453 377777777654431 123788889998888 999999999999955 4557889999
Q ss_pred HHHHHHHHHh----------cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH----HHHHHH---HHHH-H--
Q 000236 1673 LRRVQRLLKQ----------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD----RGRSMF---EGIL-S-- 1732 (1810)
Q Consensus 1673 ~~~a~~~~~~----------~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e----~Ar~lf---e~al-~-- 1732 (1810)
-..|..|... ..++|...|.++....|.. -.-+++|.++.-.|... +.+.+- ..++ +
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 9999988775 2578999999999988654 34567777777666422 333332 1111 1
Q ss_pred hCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHhc
Q 000236 1733 EYPKRTDLW--SIYLDQEIRLGDVDLIRGLFERAISL 1767 (1810)
Q Consensus 1733 ~~P~~~~lw--~~ya~~e~k~gd~e~ar~lferal~~ 1767 (1810)
...+..+.| ..|+.+.+-.||.+.|...+++++.+
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 123345566 45666667899999999999999984
No 433
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=94.26 E-value=0.067 Score=39.93 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000236 1719 VADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1749 (1810)
Q Consensus 1719 ~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~ 1749 (1810)
.+++||.+|++.+...|. ...|..||.+|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 467888888888887765 678888888763
No 434
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.25 E-value=3 Score=51.44 Aligned_cols=190 Identities=13% Similarity=0.076 Sum_probs=124.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCC
Q 000236 1558 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ----YCD 1633 (1810)
Q Consensus 1558 P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~----~~~ 1633 (1810)
+.+....+.++..+-...+++++..+....... + .....-++.|...+......-+ .-+....+-.-++. ...
T Consensus 68 ~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~-~-~~~~~l~~~W~~Rl~~~~~~~~-~~~~il~~R~~~l~~~~~~~~ 144 (352)
T PF02259_consen 68 SESYQRAYPSLVKLQQLVELEEIIELKSNLSQN-P-QDLKSLLKRWRSRLPNMQDDFS-VWEPILSLRRLVLSLILLPEE 144 (352)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc-H-HHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHhcccchhH
Confidence 455555666666666667777777766332111 0 0000112456655543211100 11222221122222 111
Q ss_pred CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHh-cHHHHHHHHHHHHH-hCCCC------
Q 000236 1634 PKKVHLALLGLYERTEQNKLADELLYKMIKKFK----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL-SLPRH------ 1701 (1810)
Q Consensus 1634 ~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~----~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk-~~p~~------ 1701 (1810)
....|+.++.+..+.|+++-|...+.++....+ ..+.+.+.++.++... +..+|...++..++ .....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 138899999999999999999999999887541 2678888999999999 99999998888777 11111
Q ss_pred -------------------------ChHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000236 1702 -------------------------KHIKFISQTAILEFKN------GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1750 (1810)
Q Consensus 1702 -------------------------~~~~~~~~~a~l~~~~------g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k 1750 (1810)
...+++..+|.+.... ++.+.+...|..++..+|.....|..++.++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 1136788888888777 789999999999999999999999999988764
No 435
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.19 E-value=2.9 Score=51.74 Aligned_cols=184 Identities=11% Similarity=0.040 Sum_probs=92.9
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 000236 1571 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1650 (1810)
Q Consensus 1571 ~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~ 1650 (1810)
..+..+..+-.+++.+||+..|. +. -+|+-+...... +..++.++|++|++..... +.........|.
T Consensus 178 AWRERnp~aRIkaA~eALei~pd-----CA---dAYILLAEEeA~-Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g~ 245 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPD-----CA---DAYILLAEEEAS-TIVEAEELLRQAVKAGEAS---LGKSQFLQHHGH 245 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhh-----hh---HHHhhccccccc-CHHHHHHHHHHHHHHHHHh---hchhhhhhcccc
Confidence 34445666666777788865442 11 233333332222 4688888888887654311 000000000010
Q ss_pred hHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000236 1651 NKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE 1728 (1810)
Q Consensus 1651 ~~~A~~~~e~~lk~~-~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe 1728 (1810)
.++-...+. ....-+-.++|.+..+. +.++|.+.|+..++.+|...+..+...+...+...+.+.+++.++.
T Consensus 246 ------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 ------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred ------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 000000010 00122223455666666 7777777777777777665455677777777777777777777777
Q ss_pred HHHHh-CCCCHHHHHHHHHHHHH-cCC---------------hHHHHHHHHHHHhcCCCchhH
Q 000236 1729 GILSE-YPKRTDLWSIYLDQEIR-LGD---------------VDLIRGLFERAISLSLPPKKM 1774 (1810)
Q Consensus 1729 ~al~~-~P~~~~lw~~ya~~e~k-~gd---------------~e~ar~lferal~~~~~p~~~ 1774 (1810)
+.=.. .|++..+...-+.+..+ .+| -..|.+.+.||+. ++|.-+
T Consensus 320 kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp 380 (539)
T PF04184_consen 320 KYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVP 380 (539)
T ss_pred HhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCc
Confidence 64321 34444433332332222 122 1235677888887 555444
No 436
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=94.09 E-value=0.17 Score=61.79 Aligned_cols=107 Identities=14% Similarity=0.232 Sum_probs=73.3
Q ss_pred CcccCCEEEEEEEEE--eCCe-EEEEEcchhhcc----hh-hHHhhhhhcCCCcEEEEEEEEEeeceEEEEEc---C--C
Q 000236 417 KFKVGAELVFRVLGV--KSKR-ITVTHKKTLVKS----KL-AILSSYAEATDRLITHGWITKIEKHGCFVRFY---N--G 483 (1810)
Q Consensus 417 ~~~vG~~v~~rVl~v--~~~~-i~ls~k~~l~~~----~~-~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~~---~--~ 483 (1810)
.+++|+.|...|--. +-+| ..-+.|+.+... .. -++..|.+ +.|.++.|+|.++...+++|++. + +
T Consensus 102 ~~~iGD~v~~~v~~~~~~fgRiAAq~aKQvi~Qkire~ER~~i~~ef~~-~~GeIV~G~V~r~e~~~viv~l~~~~g~~~ 180 (449)
T PRK12329 102 EAQLGDTVVLDVTPEQEDFGRMAAIQTKQVLAQKLRDQQRKMIQEEFQD-LEDTVLTARVLRFERQSVIMAVSSGFGQPE 180 (449)
T ss_pred CCcCCCEEEEecCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEcCCCEEEEecccCCCcc
Confidence 588999998765310 1122 222333322221 11 12233433 47999999999999999999983 3 3
Q ss_pred eEEEeeccccCCCCCCCCCcCccCCCEEEEEEEEEeCCC---CeEEEEEe
Q 000236 484 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS---RRINLSFM 530 (1810)
Q Consensus 484 v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~---~~l~lS~k 530 (1810)
+.|++|.++.. |.+.|++|+.++|.|.+++... -.+.||..
T Consensus 181 ~EaiLP~~Eqi------p~E~y~~Gdrika~i~~V~~~~~kGpqIilSRt 224 (449)
T PRK12329 181 VEAELPKREQL------PNDNYRANATFKVFLKEVSEGPRRGPQLFVSRA 224 (449)
T ss_pred eEEEecHHHcC------CCCcCCCCCEEEEEEEEeecCCCCCCEEEEEcC
Confidence 99999998884 5578999999999999998753 46888864
No 437
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.05 E-value=3.7 Score=51.81 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=23.6
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000236 1769 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1805 (1810)
Q Consensus 1769 ~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v 1805 (1810)
..++.+.+..+.+..-.+..|+.+.|+.-|-+|-+|-
T Consensus 876 ~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~k 912 (1636)
T KOG3616|consen 876 HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFK 912 (1636)
T ss_pred hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHH
Confidence 3445554555666655566788888887777776654
No 438
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.00 E-value=0.45 Score=51.11 Aligned_cols=96 Identities=19% Similarity=0.191 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Q 000236 1683 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG----------VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL- 1751 (1810)
Q Consensus 1683 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g----------~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~- 1751 (1810)
-++.|++.++.+...+|.+ .+.+.+|+..+..+. .+++|.+=|+.||..+|+..++...++..+..+
T Consensus 6 ~FE~ark~aea~y~~nP~D--adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLD--ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3788999999999999987 588899888766442 267888888999999999988766666666543
Q ss_pred ---CC-------hHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000236 1752 ---GD-------VDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1784 (1810)
Q Consensus 1752 ---gd-------~e~ar~lferal~~~~~p~~~~~lw~~yl~~ 1784 (1810)
.+ +++|...|++|.. ..|.+. ++++-+++
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne--~Y~ksLe~ 122 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNE--LYRKSLEM 122 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-H--HHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcH--HHHHHHHH
Confidence 23 4556666666666 445443 55554443
No 439
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.80 E-value=0.14 Score=39.09 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000236 1705 KFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1737 (1810)
Q Consensus 1705 ~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~ 1737 (1810)
.+|..+|.+++..|++++|+..|+++++.+|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677777777777777777777777777653
No 440
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=1.8 Score=50.31 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=115.9
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHH--HHHHHHHHcCCCC
Q 000236 1540 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV--AYFNLENEYGNPP 1617 (1810)
Q Consensus 1540 ~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~--~yl~le~~~g~~~ 1617 (1810)
.+..++|....+++|...|.+...|..--..+.-+|+.+.-+..+++.+..-+ ++.-. ..++ .|.--....|-|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp~-~sYv~GmyaFgL~E~g~y- 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLPC-YSYVHGMYAFGLEECGIY- 191 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCcH-HHHHHHHHHhhHHHhccc-
Confidence 34588999999999999999999998888888889999999999998874422 22211 2222 233333455644
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHh-cHHHHHHHH
Q 000236 1618 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVV 1691 (1810)
Q Consensus 1618 ~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~----~~~w~~~a~~~~~~-~~~~A~~ll 1691 (1810)
+.|++..+||++.++.. =...+.+.+++..|++.++.+.+++......++ ..-|-..|.|+++. .++.|.++|
T Consensus 192 -~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 -DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred -hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88999999999999876 455678889999999999998887765544322 34466778889999 999999999
Q ss_pred HHH-HHhCCC
Q 000236 1692 QRA-LLSLPR 1700 (1810)
Q Consensus 1692 ~ra-lk~~p~ 1700 (1810)
.+- ++.+.+
T Consensus 271 D~ei~k~l~k 280 (491)
T KOG2610|consen 271 DREIWKRLEK 280 (491)
T ss_pred HHHHHHHhhc
Confidence 874 444433
No 441
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.71 E-value=8.7 Score=55.83 Aligned_cols=231 Identities=16% Similarity=0.151 Sum_probs=147.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCcc--chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHH
Q 000236 1560 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIR--EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1637 (1810)
Q Consensus 1560 ~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~--~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~~i 1637 (1810)
++.-|..-+..-....+..+-.-.++|+......+ -...-.+.|+.++.+....| ..+.|....=.|.+.. ..++
T Consensus 1628 ~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG--~~q~A~nall~A~e~r-~~~i 1704 (2382)
T KOG0890|consen 1628 NSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG--HLQRAQNALLNAKESR-LPEI 1704 (2382)
T ss_pred cchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc--cHHHHHHHHHhhhhcc-cchH
Confidence 56778776655444444555555666666544222 12223479999999999999 4588887777776655 4589
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhc-CC----------------CHHHHHHHHHHHHHh---cHHHHHHHHHHHHHh
Q 000236 1638 HLALLGLYERTEQNKLADELLYKMIKKF-KH----------------SCKVWLRRVQRLLKQ---QQEGVQAVVQRALLS 1697 (1810)
Q Consensus 1638 ~~~l~~~~~~~g~~~~A~~~~e~~lk~~-~~----------------~~~~w~~~a~~~~~~---~~~~A~~ll~ralk~ 1697 (1810)
+...|.++.+.|+...|..+++..+.++ ++ ..++.+.++.|..+. ........|..|.+.
T Consensus 1705 ~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1705 VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999654 32 134566777777666 566778999999999
Q ss_pred CCCCC--hHHHHHHHHHHHH--------HcCCHHH---HHHHHHHHHH--------hCCCCHHHHHHHHHHHH---HcC-
Q 000236 1698 LPRHK--HIKFISQTAILEF--------KNGVADR---GRSMFEGILS--------EYPKRTDLWSIYLDQEI---RLG- 1752 (1810)
Q Consensus 1698 ~p~~~--~~~~~~~~a~l~~--------~~g~~e~---Ar~lfe~al~--------~~P~~~~lw~~ya~~e~---k~g- 1752 (1810)
+|... |..+-..|..++. ++|++.. |..-|.+++. +.|+-..+|..|+--.. +.+
T Consensus 1785 l~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r 1864 (2382)
T KOG0890|consen 1785 LPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPR 1864 (2382)
T ss_pred cccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCCh
Confidence 99543 2222222444332 3456666 3444445543 35777788998744332 232
Q ss_pred ------ChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH--cCCHHHHHHH
Q 000236 1753 ------DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS--VGEEERIEYV 1797 (1810)
Q Consensus 1753 ------d~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~--~G~~~~a~~v 1797 (1810)
+....-...++++. .+||- .++..|-++-.+ |.+.+-+.-+
T Consensus 1865 ~ei~s~~~~~in~~i~~~~~-~lp~Y---~f~ta~sQLlSRicH~~~dV~~vl 1913 (2382)
T KOG0890|consen 1865 GEIVSKNLKLINSLIEEALE-HLPTY---QFYTAYSQLLSRICHPNQDVARVL 1913 (2382)
T ss_pred hhhhhhhHHHHHHHHHHHHH-hCcch---HHHHHHHHHHHHHcCCchHHHHHH
Confidence 34445556677776 56663 467777777554 4444444333
No 442
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.68 E-value=1.7 Score=55.65 Aligned_cols=162 Identities=19% Similarity=0.158 Sum_probs=107.0
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcC-CCHHH-----HH-HHHH-HHH---Hh-cHHHHHHHHHHHHHhCCCCChHHHHH
Q 000236 1641 LLGLYERTEQNKLADELLYKMIKKFK-HSCKV-----WL-RRVQ-RLL---KQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1708 (1810)
Q Consensus 1641 l~~~~~~~g~~~~A~~~~e~~lk~~~-~~~~~-----w~-~~a~-~~~---~~-~~~~A~~ll~ralk~~p~~~~~~~~~ 1708 (1810)
++.+.--.|+-+.+.+.+.++.+... ..+-+ |+ .... +.- .. ..+.|.++++++++.+|+.. -...
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~--lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA--LFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH--HHHH
Confidence 33444557888999999998876321 12211 11 1111 111 12 56889999999999999872 4455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHH-
Q 000236 1709 QTAILEFKNGVADRGRSMFEGILSEY---PKRTD-LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE- 1783 (1810)
Q Consensus 1709 ~~a~l~~~~g~~e~Ar~lfe~al~~~---P~~~~-lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~- 1783 (1810)
.-|+++...|++++|.+.|++++... |+-.+ .+..++..++-+.++++|...|.++... ..+.++ +-.|+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-s~WSka---~Y~Y~~a 347 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-SKWSKA---FYAYLAA 347 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-cccHHH---HHHHHHH
Confidence 55678889999999999999988432 22222 3455667777899999999999999983 233222 333333
Q ss_pred -HHHHcCCH-------HHHHHHHHHHHHHHHhh
Q 000236 1784 -YEKSVGEE-------ERIEYVKQKAMEYVEST 1808 (1810)
Q Consensus 1784 -~E~~~G~~-------~~a~~v~~rAl~~v~~~ 1808 (1810)
.....|+. ++|..+|.++-.+.++.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~ 380 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQKK 380 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 34556766 77778888887777653
No 443
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.65 Score=51.66 Aligned_cols=97 Identities=16% Similarity=0.029 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000236 1649 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1727 (1810)
Q Consensus 1649 g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lf 1727 (1810)
.+|..|...|.+++...|..+..|.+.|.++++. +++.+.+-..||++..|+. ++..+.+++..+....++.|...+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHhhccccHHHHHH
Confidence 4456666677777777777777777777777777 7777777777777766654 455666666666666667777777
Q ss_pred HHHHHhC-----CCCHHHHHHHHHH
Q 000236 1728 EGILSEY-----PKRTDLWSIYLDQ 1747 (1810)
Q Consensus 1728 e~al~~~-----P~~~~lw~~ya~~ 1747 (1810)
.++.... |--.++|..+-+.
T Consensus 102 qra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 102 QRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHhcCCCCCcchHHHHHHHH
Confidence 7763321 2234466555444
No 444
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.10 E-value=7 Score=51.64 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=48.4
Q ss_pred hcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChH
Q 000236 1573 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1652 (1810)
Q Consensus 1573 ~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~ 1652 (1810)
..+.+|+|.+.++|+-+ ..+|.+++...++.+ ....|.+-|-|| +...-|...++...++|+++
T Consensus 1087 ~i~~ldRA~efAe~~n~----------p~vWsqlakAQL~~~--~v~dAieSyika----dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCNE----------PAVWSQLAKAQLQGG--LVKDAIESYIKA----DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HhhhHHHHHHHHHhhCC----------hHHHHHHHHHHHhcC--chHHHHHHHHhc----CCcHHHHHHHHHHHhcCcHH
Confidence 34566666666666531 247777777777766 346666666655 23355666777777777777
Q ss_pred HHHHHHHHHHHhc
Q 000236 1653 LADELLYKMIKKF 1665 (1810)
Q Consensus 1653 ~A~~~~e~~lk~~ 1665 (1810)
+....+.-+-++.
T Consensus 1151 dLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKV 1163 (1666)
T ss_pred HHHHHHHHHHHhh
Confidence 7776666665544
No 445
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.06 E-value=0.16 Score=38.21 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000236 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQRL 1679 (1810)
Q Consensus 1650 ~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~ 1679 (1810)
..+.|+.+|++++..+|.+..+|..|+.++
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 455666666666666666666666666654
No 446
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.06 E-value=5.9 Score=48.41 Aligned_cols=174 Identities=14% Similarity=0.061 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHhcCCC--
Q 000236 1560 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE---YGNPPEEAVVKVFQRALQYCDP-- 1634 (1810)
Q Consensus 1560 ~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~---~g~~~~e~a~~vferAl~~~~~-- 1634 (1810)
++..-+.++-.|....+++.-..+.+..- .+|.-.-.+..++-..|+-..++ -| +.++|++++..++.....
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~-~~p~~~~~~~~~i~~~yafALnRrn~~g--dre~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLE-ALPTCDVANQHNIKFQYAFALNRRNKPG--DREKALQILLPVLESDENPD 216 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhh-ccCccchhcchHHHHHHHHHHhhcccCC--CHHHHHHHHHHHHhccCCCC
Confidence 56677788888888899999999997765 44432233345677778877777 67 669999999997766543
Q ss_pred HHHHHHHHHHHHH---------hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--cH---HHHHHHH---HHHH-H
Q 000236 1635 KKVHLALLGLYER---------TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQ---EGVQAVV---QRAL-L 1696 (1810)
Q Consensus 1635 ~~i~~~l~~~~~~---------~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~--~~---~~A~~ll---~ral-k 1696 (1810)
.++|-.++.+|.+ ....++|...|.++....++.. .=++++.++.-. +. .+++++- ...+ +
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 3777777776643 2237788899998887653221 112444444433 22 2333322 1111 1
Q ss_pred h--CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000236 1697 S--LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1737 (1810)
Q Consensus 1697 ~--~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~ 1737 (1810)
. ..+....-.+..|+.+..-.|+++.|.+.++++++..|..
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 1 1111212333445555667899999999999999886543
No 447
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=2.4 Score=47.36 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=81.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 000236 1570 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1649 (1810)
Q Consensus 1570 ~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g 1649 (1810)
-+..+|++.+|...|..|+.... -+.+-.+-++ ++ ..-+++. ...+++.|++.+...+
T Consensus 187 ~lfk~~~ykEA~~~YreAi~~l~-------------~L~lkEkP~e--~e--W~eLdk~-----~tpLllNy~QC~L~~~ 244 (329)
T KOG0545|consen 187 RLFKLGRYKEASSKYREAIICLR-------------NLQLKEKPGE--PE--WLELDKM-----ITPLLLNYCQCLLKKE 244 (329)
T ss_pred hhhhhccHHHHHHHHHHHHHHHH-------------HHHhccCCCC--hH--HHHHHHh-----hhHHHHhHHHHHhhHH
Confidence 34567888999999988874221 1111111121 01 1111111 1257888899999999
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC
Q 000236 1650 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1702 (1810)
Q Consensus 1650 ~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~ 1702 (1810)
.|=++.+.....++.++.+.++++..|...... +.++|++-|..+|...|.-.
T Consensus 245 e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 245 EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 999999999999999999999999999999999 99999999999999988753
No 448
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.64 E-value=1.9 Score=53.18 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=112.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHH---HHHcCCCCHHHHHHH
Q 000236 1548 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL---ENEYGNPPEEAVVKV 1624 (1810)
Q Consensus 1548 ~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~l---e~~~g~~~~e~a~~v 1624 (1810)
..+-.+|..+|.+....+.++..+.++|+.+.|.++.+|||-.+. + .|.....- ....|+ ++=-
T Consensus 27 ~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e------~--~~~~~F~~~~~~~~~g~-----~rL~ 93 (360)
T PF04910_consen 27 NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE------R--AFHPSFSPFRSNLTSGN-----CRLD 93 (360)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------H--HHHHHhhhhhcccccCc-----cccC
Confidence 344556789999999999999999999999999999999995433 1 22222211 011111 1101
Q ss_pred HHHHHhcCCCHHH---HHHHHHHHHHhCChHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHh--cHHHHHHHHHHHHHhC
Q 000236 1625 FQRALQYCDPKKV---HLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSL 1698 (1810)
Q Consensus 1625 ferAl~~~~~~~i---~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~-~~~~w~~~a~~~~~~--~~~~A~~ll~ralk~~ 1698 (1810)
|++ ..++.+ ...++..+.+.|-+..|.+..+-+++..|. ++-.-..+.++|.=. +++-..++++......
T Consensus 94 ~~~----~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~ 169 (360)
T PF04910_consen 94 YRR----PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKC 169 (360)
T ss_pred Ccc----ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhh
Confidence 111 011233 345666788889999999999999998886 666666666666554 7777777776654421
Q ss_pred CCC---ChHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCCHH
Q 000236 1699 PRH---KHIKFISQTAILEFKNGVA---------------DRGRSMFEGILSEYPKRTD 1739 (1810)
Q Consensus 1699 p~~---~~~~~~~~~a~l~~~~g~~---------------e~Ar~lfe~al~~~P~~~~ 1739 (1810)
... .-+.+-...|..++..++. +.|+..+.+|+..+|.-..
T Consensus 170 ~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 170 YRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred hhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 111 0113444445555556655 8999999999999986433
No 449
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.34 E-value=2.4 Score=44.93 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 000236 1683 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762 (1810)
Q Consensus 1683 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lfe 1762 (1810)
..+.+...+++|+..+.+.--...-. ..=....|..|+... ..++..++..+...|+++.|..+++
T Consensus 21 ~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 21 DPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRELY------LDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp -HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHHHH------HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 67777788888887765431000000 011233344444442 4677788888889999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000236 1763 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1809 (1810)
Q Consensus 1763 ral~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~~v~~~~ 1809 (1810)
+++. ..|-+- .+|...+......|+...|..+|+++.+.+...+
T Consensus 87 ~~l~--~dP~~E-~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~el 130 (146)
T PF03704_consen 87 RALA--LDPYDE-EAYRLLMRALAAQGRRAEALRVYERYRRRLREEL 130 (146)
T ss_dssp HHHH--HSTT-H-HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--cCCCCH-HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 9999 666655 6999999999999999999999999999887654
No 450
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.19 E-value=0.32 Score=37.11 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCC
Q 000236 1670 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1700 (1810)
Q Consensus 1670 ~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1700 (1810)
++|+.+|.++.++ ++++|++.|+++++..|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4667777777777 777777777777776665
No 451
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.64 E-value=0.32 Score=37.20 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000236 1705 KFISQTAILEFKNGVADRGRSMFEGILSEYPK 1736 (1810)
Q Consensus 1705 ~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~ 1736 (1810)
.+|...|..++.+|++++|...|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555566666666665555554
No 452
>PRK10811 rne ribonuclease E; Reviewed
Probab=91.42 E-value=0.41 Score=63.17 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=51.7
Q ss_pred CCCCEEEEEEEEEee--ceEEEEeCCCcEEEEEcccCCCcccCC---------ccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000236 1252 SPNMIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDGYVES---------PEKEFPIGKLVAGRVLSVEPLSKRVEV 1320 (1810)
Q Consensus 1252 ~~G~~v~G~V~~v~~--~G~fV~l~~~v~g~v~~s~ls~~~~~~---------~~~~f~~G~~V~~~Vl~vd~~~~ri~l 1320 (1810)
.+|.++.|+|.+|.+ .++||+||.+..||+|++|+...+..+ ....++.||.|-|-|..--..++...|
T Consensus 37 ~vGnIYkGkVenIvPGInAAFVDIG~gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeILVQV~KEa~gtKGp~L 116 (1068)
T PRK10811 37 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 (1068)
T ss_pred CccceEEEEEecccCCcceeEEEecCCcceEEEhhhccccccccccccccccccccccCCCCEEEEEEeecccCCCCCce
Confidence 479999999999976 499999999999999999996543222 134578899999988664333333333
No 453
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.37 E-value=0.37 Score=36.91 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCC
Q 000236 1670 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1700 (1810)
Q Consensus 1670 ~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1700 (1810)
.+|+.+|..+..+ ++++|...|++|++..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 5677778777777 888888888888877764
No 454
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.20 E-value=39 Score=40.26 Aligned_cols=204 Identities=16% Similarity=0.134 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCc-------cchh--hHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Q 000236 1561 SFVWIKYMAFMLSMA-DVEKARSIAERALQTINI-------REEN--EKLNIWVAYFNLENEYGNP-PEEAVVKVFQRAL 1629 (1810)
Q Consensus 1561 ~~~W~~y~~~~~~~~-~~d~Ar~v~eral~~~~~-------~~e~--e~~~lW~~yl~le~~~g~~-~~e~a~~vferAl 1629 (1810)
+...+..+......+ +++.|...++||.+.++. ..+. -++.+...+++.+...+.+ ..++|..+.+-+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 455667777777888 999999999999986432 1111 1334455566666655532 2344555555554
Q ss_pred hcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh---cHHHHHHHHHHHHHhCCCCChHH
Q 000236 1630 QYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLSLPRHKHIK 1705 (1810)
Q Consensus 1630 ~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~---~~~~A~~ll~ralk~~p~~~~~~ 1705 (1810)
...+.. .++...+.+..+.++.+++.+.+.+++.........|......+.+. ....|...+.+.+-..-....-.
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~ 194 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ 194 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH
Confidence 455553 77777777777789999999999999998765555666655555443 55666666666554322211101
Q ss_pred HHHHHHHHH---H-Hc-CC------HHHHHHHHHHHHHhC--CCC--------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000236 1706 FISQTAILE---F-KN-GV------ADRGRSMFEGILSEY--PKR--------TDLWSIYLDQEIRLGDVDLIRGLFERA 1764 (1810)
Q Consensus 1706 ~~~~~a~l~---~-~~-g~------~e~Ar~lfe~al~~~--P~~--------~~lw~~ya~~e~k~gd~e~ar~lfera 1764 (1810)
|..-+-+. + .. ++ .+....+++.+.+.. |-. .-+|.. +.-.++.++++.|...|+-+
T Consensus 195 -~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 195 -WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred -HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHH
Confidence 33333221 1 11 11 444555555433322 222 225776 66677899999999999988
Q ss_pred Hh
Q 000236 1765 IS 1766 (1810)
Q Consensus 1765 l~ 1766 (1810)
+.
T Consensus 273 l~ 274 (278)
T PF08631_consen 273 LH 274 (278)
T ss_pred HH
Confidence 75
No 455
>PRK10811 rne ribonuclease E; Reviewed
Probab=91.16 E-value=0.42 Score=63.12 Aligned_cols=69 Identities=25% Similarity=0.434 Sum_probs=53.6
Q ss_pred CCCcEEEEEEEEEeec--eEEEEEeCCceeEEEeccccCccccc---------CcccccCCCCEEEEEEEEEecCCCeeE
Q 000236 1342 HVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSEDHVD---------NIETIYRAGEKVKVKILKVDKEKRRIS 1410 (1810)
Q Consensus 1342 ~~G~~v~G~V~~i~~~--G~fV~l~~~~v~gl~~~sel~~~~~~---------~~~~~~~~G~~V~~~I~~id~~~~ri~ 1410 (1810)
.+|+||.|+|.+|.+. ++||+|+. +..|++|++++...... +.+..+++||.|-|.|.+--...+-..
T Consensus 37 ~vGnIYkGkVenIvPGInAAFVDIG~-gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeILVQV~KEa~gtKGp~ 115 (1068)
T PRK10811 37 KKANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAA 115 (1068)
T ss_pred CccceEEEEEecccCCcceeEEEecC-CcceEEEhhhccccccccccccccccccccccCCCCEEEEEEeecccCCCCCc
Confidence 5899999999999874 99999996 89999999998543321 234568999999999998654444433
Q ss_pred E
Q 000236 1411 L 1411 (1810)
Q Consensus 1411 l 1411 (1810)
|
T Consensus 116 L 116 (1068)
T PRK10811 116 L 116 (1068)
T ss_pred e
Confidence 3
No 456
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.00 E-value=0.35 Score=36.50 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000236 1706 FISQTAILEFKNGVADRGRSMFEGILSEYPKR 1737 (1810)
Q Consensus 1706 ~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~ 1737 (1810)
+++..|.++.+.|++++|+..|++++..+|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56677788888888888888888888888864
No 457
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.97 E-value=17 Score=48.64 Aligned_cols=180 Identities=14% Similarity=0.196 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhCCh
Q 000236 1579 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQN 1651 (1810)
Q Consensus 1579 ~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-------~i~~~l~~~~~~~g~~ 1651 (1810)
.|...++-+++..+...+.| +.+.+.|+.++...-+ +.+.|+..++||+..+... .....++.+|.+.+..
T Consensus 39 ~ai~CL~~~~~~~~l~p~~e-a~~~l~la~iL~~eT~-n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQE-ARVRLRLASILLEETE-NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHhccCCCCHHHH-HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35556666664444433333 5678888888876665 5799999999998877542 4445667788888877
Q ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHH-----HHh-cHHHHHHHHHHHHHhCC--CCChHHHHHHHHH--HHHHcCCH
Q 000236 1652 KLADELLYKMIKKFKH-SCKVWLRRVQRL-----LKQ-QQEGVQAVVQRALLSLP--RHKHIKFISQTAI--LEFKNGVA 1720 (1810)
Q Consensus 1652 ~~A~~~~e~~lk~~~~-~~~~w~~~a~~~-----~~~-~~~~A~~ll~ralk~~p--~~~~~~~~~~~a~--l~~~~g~~ 1720 (1810)
. |....++++..+.. ....|....+++ ... ++..|.+.++....... ...++.+...+.. +....+.+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 99999999987754 233444333333 334 78889999998877653 3333333333333 34456777
Q ss_pred HHHHHHHHHHHHh---C-------CCCHHHHHHHHHHHH--HcCChHHHHHHH
Q 000236 1721 DRGRSMFEGILSE---Y-------PKRTDLWSIYLDQEI--RLGDVDLIRGLF 1761 (1810)
Q Consensus 1721 e~Ar~lfe~al~~---~-------P~~~~lw~~ya~~e~--k~gd~e~ar~lf 1761 (1810)
+.+.+.++++... . +....+|....++.. ..|+++.+...+
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L 248 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKL 248 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7788888877432 1 223567888877764 677766665543
No 458
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.92 E-value=1.1 Score=51.19 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1717 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1717 ~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
.|+.|+|.++|+-|++..|.++++...|+++.....++-.|-.+|-+|+.
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 34445555555555555555555555555444444444444455544444
No 459
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.91 E-value=38 Score=45.20 Aligned_cols=238 Identities=14% Similarity=0.022 Sum_probs=140.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchh---hHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHhcCCCH
Q 000236 1560 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN---EKLNIWVAYFNLEN-EYGNPPEEAVVKVFQRALQYCDPK 1635 (1810)
Q Consensus 1560 ~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~---e~~~lW~~yl~le~-~~g~~~~e~a~~vferAl~~~~~~ 1635 (1810)
++.+-+.++=....+..+++|..+..++....+...+. .-..-|.++-..-. ..+ +.+.|.++.++|+..-|..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~--~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG--DPEEAEDLARLALVQLPEA 491 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhcccc
Confidence 45556666666678889999999998888766542111 11234666555433 334 6799999999999988864
Q ss_pred ------HHHHHHHHHHHHhCChHHHHHHHHHHHHhc----CCCHHHHHHHH--HHHHHh-c--HHHHHHHHHH----HHH
Q 000236 1636 ------KVHLALLGLYERTEQNKLADELLYKMIKKF----KHSCKVWLRRV--QRLLKQ-Q--QEGVQAVVQR----ALL 1696 (1810)
Q Consensus 1636 ------~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~----~~~~~~w~~~a--~~~~~~-~--~~~A~~ll~r----alk 1696 (1810)
-.+...+....-.|++.+|+.+...+.+.. .-...+|..+- .++.++ + +++....|.+ -+.
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 445566666777899999999988877642 23456677663 344444 2 2222222222 223
Q ss_pred hCCCCCh-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 000236 1697 SLPRHKH-IKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSI---YLDQEIRLGDVDLIRGLFERAISLSLPP 1771 (1810)
Q Consensus 1697 ~~p~~~~-~~~~~~~a~l~~~-~g~~e~Ar~lfe~al~~~P~~~~lw~~---ya~~e~k~gd~e~ar~lferal~~~~~p 1771 (1810)
..|.+.. ..++......+++ .+...+|+.-++-....-|...+.|.. ++.+++..||.+.|....++....-..+
T Consensus 572 q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 572 QKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred hcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 3333221 1222222222222 235566666666666666666665544 5777889999999998888777632222
Q ss_pred hhHHHHHHHHHH-----HHHHcCCHHHHHHHHHH
Q 000236 1772 KKMKFLFKKYLE-----YEKSVGEEERIEYVKQK 1800 (1810)
Q Consensus 1772 ~~~~~lw~~yl~-----~E~~~G~~~~a~~v~~r 1800 (1810)
. ....|...+. +=...||.+.+.....+
T Consensus 652 ~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 652 Q-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred C-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1 1134544443 22236787776655544
No 460
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.80 E-value=57 Score=43.69 Aligned_cols=182 Identities=16% Similarity=0.116 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000236 1561 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1635 (1810)
Q Consensus 1561 ~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~-~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~---- 1635 (1810)
..++.+-+.++...|..++|.+.+-+|= |.+.+ .+-..+ +.++-+ ..-..+..++++..|..
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-------d~~~aa~lle~~---~~~L~~---~~~lsll~~~~~~lP~~~l~~ 413 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG-------DPEMAADLLEQL---EWQLFN---GSELSLLLAWLKALPAELLAS 413 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC-------CHHHHHHHHHhh---hhhhhc---ccchHHHHHHHHhCCHHHHhh
Confidence 6777777777788888888877665443 22211 111111 111111 11245666677777653
Q ss_pred --HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-----C---HHHHH-HHHHHHHHh-cHHHHHHHHHHHHHhCCCCC-
Q 000236 1636 --KVHLALLGLYERTEQNKLADELLYKMIKKFKH-----S---CKVWL-RRVQRLLKQ-QQEGVQAVVQRALLSLPRHK- 1702 (1810)
Q Consensus 1636 --~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~-----~---~~~w~-~~a~~~~~~-~~~~A~~ll~ralk~~p~~~- 1702 (1810)
.+-+.++.......++.+|..+..++....+. . .--|. ..+.+.... +++.|.++-++++...|...
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 44455555666788999999999988876543 1 12333 344555555 89999999999999998753
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH--HHcCChH
Q 000236 1703 --HIKFISQTAILEFKNGVADRGRSMFEGILSE----YPKRTDLWSIYLDQE--IRLGDVD 1755 (1810)
Q Consensus 1703 --~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~----~P~~~~lw~~ya~~e--~k~gd~e 1755 (1810)
.+.++...+.+.+-.|++++|+.+...+.+. +--...+|..+...+ ..+|+..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~ 554 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA 554 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH
Confidence 2457777888888899999999999988765 333456888885544 4677433
No 461
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.68 E-value=14 Score=43.41 Aligned_cols=117 Identities=8% Similarity=-0.098 Sum_probs=56.4
Q ss_pred HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHh-CCCCC-hHHHHHHHHHHHHHcCCHHHH
Q 000236 1647 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS-LPRHK-HIKFISQTAILEFKNGVADRG 1723 (1810)
Q Consensus 1647 ~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~-~p~~~-~~~~~~~~a~l~~~~g~~e~A 1723 (1810)
..|++-+|...++++++.||.+.-+|..--..++-+ +....+..+++.+-. .|.-. +.-+--.||--+...|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 445555666666666666666666665555555555 555555555555433 11110 001111233333445666666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000236 1724 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1763 (1810)
Q Consensus 1724 r~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lfer 1763 (1810)
.+.-+++++.+|.+.-.--..+..+.-.|++.++....+.
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6666666666654322222223333344555555544433
No 462
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.42 E-value=4.7 Score=45.18 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000236 1705 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1774 (1810)
Q Consensus 1705 ~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~ 1774 (1810)
.++++|+|.+...|++=++.+....+|..+|.+..+++.-+......=+.++|+.-|..+|. +.|.-.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldpsla 298 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPSLA 298 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChhhH
Confidence 68888999888889988888888899999999988888888888877788889999999988 555444
No 463
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=33 Score=39.28 Aligned_cols=228 Identities=13% Similarity=0.151 Sum_probs=147.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000236 1541 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM-ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1619 (1810)
Q Consensus 1541 ~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~-~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e 1619 (1810)
+..|+|.+.-+.++..+|.+...|..--.++... .++.+-.+..++.....|.. ..+|-..-.+....+.+ .
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN-----YQvWHHRr~ive~l~d~--s 129 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN-----YQVWHHRRVIVELLGDP--S 129 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-----hhHHHHHHHHHHHhcCc--c
Confidence 3488888888999999999999998766666444 46777778888877665532 46898877777777754 3
Q ss_pred -HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-------cHHHHHHH
Q 000236 1620 -AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-------QQEGVQAV 1690 (1810)
Q Consensus 1620 -~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-------~~~~A~~l 1690 (1810)
.-.+..++++.....+ .+|...--+....+.++.-.....+++...-.+-.+|...--..... ..++-..+
T Consensus 130 ~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~y 209 (318)
T KOG0530|consen 130 FRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNY 209 (318)
T ss_pred cchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHH
Confidence 4466777777744433 88888877777778899988888999988777777887533222221 23444556
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHH-cC--CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH------HcCChH---HH
Q 000236 1691 VQRALLSLPRHKHIKFISQTAILEFK-NG--VADRGRSMFEGILSEYPK-RTDLWSIYLDQEI------RLGDVD---LI 1757 (1810)
Q Consensus 1691 l~ralk~~p~~~~~~~~~~~a~l~~~-~g--~~e~Ar~lfe~al~~~P~-~~~lw~~ya~~e~------k~gd~e---~a 1757 (1810)
...++...|.+. .+|..+..++.. .| .........+.+....|+ ++.+....++++. +.+.-+ +|
T Consensus 210 t~~~I~~vP~Ne--SaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a 287 (318)
T KOG0530|consen 210 TKDKILLVPNNE--SAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKA 287 (318)
T ss_pred HHHHHHhCCCCc--cHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 667888889886 789888888775 45 233344444444433343 3445555555551 233333 45
Q ss_pred HHHHHHHHhcCCCchhHHHHHH
Q 000236 1758 RGLFERAISLSLPPKKMKFLFK 1779 (1810)
Q Consensus 1758 r~lferal~~~~~p~~~~~lw~ 1779 (1810)
..+|+-+-. +..|-+. .+|.
T Consensus 288 ~~ly~~La~-~~DpiR~-nyW~ 307 (318)
T KOG0530|consen 288 VKLYEDLAI-KVDPIRK-NYWR 307 (318)
T ss_pred HHHHHHHhh-ccCcHHH-HHHH
Confidence 556665442 2444333 3553
No 464
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.07 E-value=32 Score=42.72 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhC
Q 000236 1619 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSL 1698 (1810)
Q Consensus 1619 e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~ 1698 (1810)
+-...+..|.+.+-.+...++.++++|..+ ..++-..+++|++..+-++...-..++..|.+.+.+.|...|.+|+..+
T Consensus 83 ~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 83 QIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIKKSKAAEFFGKALYRF 161 (711)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHHh
Confidence 445666677777766667777777777666 5666677777777665555554555555444336666777777776654
Q ss_pred -CCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHHcCChHHHHHHHHHHHh
Q 000236 1699 -PRHKHI---KFISQTAILEFKNGVADRGRSMFEGILSEYPK-RTDLWSIYL-DQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1699 -p~~~~~---~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~-~~~lw~~ya-~~e~k~gd~e~ar~lferal~ 1766 (1810)
|+.+.. .+|.++..+- -.|.+.-..+..++-..+.. +..+.+.+. .-|....++..|..+...++.
T Consensus 162 I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 162 IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 222111 2333333211 12445444444444433332 333444433 233344556666666666555
No 465
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.92 E-value=1.7 Score=48.49 Aligned_cols=100 Identities=14% Similarity=0.032 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 000236 1683 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1762 (1810)
Q Consensus 1683 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lfe 1762 (1810)
++..|...|.||+...|.. +..|.+-|..+++..+++.+..-..++++..|+..-..............++.|...+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~--~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTV--ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhchHHHHHHHHHhcCCCc--chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 6889999999999999987 47899999999999999999999999999999998888888888888899999999999
Q ss_pred HHHhc--CCCchhHHHHHHHHHHH
Q 000236 1763 RAISL--SLPPKKMKFLFKKYLEY 1784 (1810)
Q Consensus 1763 ral~~--~~~p~~~~~lw~~yl~~ 1784 (1810)
||.++ ..++....++|+.....
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHH
Confidence 99652 11222233688777664
No 466
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.82 E-value=37 Score=45.46 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000236 1559 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1629 (1810)
Q Consensus 1559 ~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl 1629 (1810)
+.+..|..++...++.+.+.+|.+-|-+|=. | + -++..++...+.++| +.....+.-|-
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikadD--p-s-------~y~eVi~~a~~~~~~--edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKADD--P-S-------NYLEVIDVASRTGKY--EDLVKYLLMAR 1160 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcCC--c-H-------HHHHHHHHHHhcCcH--HHHHHHHHHHH
Confidence 6789999999999999999999999977742 2 1 244444555555543 44444444443
No 467
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.28 E-value=28 Score=38.36 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=89.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHH
Q 000236 1603 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC---KVWLRRVQRL 1679 (1810)
Q Consensus 1603 W~~yl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~---~~w~~~a~~~ 1679 (1810)
|..|-++....-+ ....|-..|+.+++... .+.. +.....+++...++.+. -.-+..+..+
T Consensus 36 lfGW~ywq~~q~~-q~~~AS~~Y~~~i~~~~--------------ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ 99 (207)
T COG2976 36 LFGWRYWQSHQVE-QAQEASAQYQNAIKAVQ--------------AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAE 99 (207)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh--------------cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 4444444433322 23567777777765432 2222 33444444554443221 1223455566
Q ss_pred HHh-cHHHHHHHHHHHHHhCCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChH
Q 000236 1680 LKQ-QQEGVQAVVQRALLSLPRHKH--IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVD 1755 (1810)
Q Consensus 1680 ~~~-~~~~A~~ll~ralk~~p~~~~--~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~-lw~~ya~~e~k~gd~e 1755 (1810)
.+. ++++|...++.++..- .... .-+-+++|.+..++|.+|+|..+++.... +.-.. +-..-.|++...|+-+
T Consensus 100 ve~~~~d~A~aqL~~~l~~t-~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 100 VEANNLDKAEAQLKQALAQT-KDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HhhccHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchH
Confidence 666 8999999999888543 2221 24567888899999999999998877532 11111 2333477888999999
Q ss_pred HHHHHHHHHHh
Q 000236 1756 LIRGLFERAIS 1766 (1810)
Q Consensus 1756 ~ar~lferal~ 1766 (1810)
.||.-|+.++.
T Consensus 177 ~Ar~ay~kAl~ 187 (207)
T COG2976 177 EARAAYEKALE 187 (207)
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 468
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.17 E-value=9.8 Score=43.35 Aligned_cols=189 Identities=11% Similarity=0.032 Sum_probs=133.9
Q ss_pred hcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHh-CChHHHHHHHHHHHHhcCC
Q 000236 1590 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERT-EQNKLADELLYKMIKKFKH 1667 (1810)
Q Consensus 1590 ~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~-g~~~~A~~~~e~~lk~~~~ 1667 (1810)
.|.+++++.. -++|+..-...++ .-..|.++-+.++..+|.+ .+|.-.-.++... -...+-.+.+.+.+..+|.
T Consensus 35 ~I~Yte~fr~---~m~YfRAI~~~~E-~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK 110 (318)
T KOG0530|consen 35 KIAYTEDFRD---VMDYFRAIIAKNE-KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK 110 (318)
T ss_pred EeeechhHHH---HHHHHHHHHhccc-cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc
Confidence 3455566554 4556655555554 2488999999999999987 9998777766544 3466678888889999999
Q ss_pred CHHHHHHHHHHHHHh-cHH-HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000236 1668 SCKVWLRRVQRLLKQ-QQE-GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1745 (1810)
Q Consensus 1668 ~~~~w~~~a~~~~~~-~~~-~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya 1745 (1810)
+..+|...-.+.... ++. +-.+..++++....++- .+|..--......++++.-.+....++..+-.+-.+|+.-.
T Consensus 111 NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNY--HaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ry 188 (318)
T KOG0530|consen 111 NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNY--HAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRY 188 (318)
T ss_pred chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccch--hhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheee
Confidence 999998877666655 666 67788889998776664 57776666666677899999999999998888888997633
Q ss_pred HHHHH-cCC-----hHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000236 1746 DQEIR-LGD-----VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1787 (1810)
Q Consensus 1746 ~~e~k-~gd-----~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~ 1787 (1810)
-.... .|- .++-.+.....|. +-|.+. ..|+-...+...
T Consensus 189 fvi~~~~~~~~~~~le~El~yt~~~I~--~vP~Ne-SaWnYL~G~l~~ 233 (318)
T KOG0530|consen 189 FVITNTKGVISKAELERELNYTKDKIL--LVPNNE-SAWNYLKGLLEL 233 (318)
T ss_pred EEEEeccCCccHHHHHHHHHHHHHHHH--hCCCCc-cHHHHHHHHHHh
Confidence 22222 232 2334455566666 666666 688877776664
No 469
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=89.10 E-value=0.59 Score=57.27 Aligned_cols=116 Identities=17% Similarity=0.057 Sum_probs=93.6
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000236 1644 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1722 (1810)
Q Consensus 1644 ~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~ 1722 (1810)
-+...+.++.|...|.+++...|+...+|-..+..+++. .+..|..-+.+|++..|.. .+.|+.-|...++.+.+-+
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~--~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY--IKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh--hheeeeccHHHHhHHHHHH
Confidence 344567788899999999999998999998888888888 8999999999999998876 4788888888888999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000236 1723 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1723 Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~ 1766 (1810)
|+..|+......|++.++...+.....- -.+.-||+++.
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~-----vs~~~fe~ai~ 129 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDECNKI-----VSEEKFEKAIL 129 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHHHHH-----HHHHhhhhccc
Confidence 9999999999999998887776665431 13334666665
No 470
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.01 E-value=10 Score=47.85 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=32.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000236 1746 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1801 (1810)
Q Consensus 1746 ~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rA 1801 (1810)
+++...++..+|-++-|+.-. +- .+.+..|.+|..+...+++|.+.|.||
T Consensus 781 qlHve~~~W~eAFalAe~hPe--~~----~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPE--FK----DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhhCcc--cc----ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 344456777777776666322 22 256777777777777777777777766
No 471
>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription]
Probab=88.93 E-value=1.6 Score=45.51 Aligned_cols=66 Identities=20% Similarity=0.372 Sum_probs=44.9
Q ss_pred CCCcEEEEEEEEEeeceEEEEEeCCceeEEEec----cccC-------cccccCcccccCCCCEEEEEEEEEecCCCee
Q 000236 1342 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHV----SELS-------EDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1409 (1810)
Q Consensus 1342 ~~G~~v~G~V~~i~~~G~fV~l~~~~v~gl~~~----sel~-------~~~~~~~~~~~~~G~~V~~~I~~id~~~~ri 1409 (1810)
-.|+++.|.|+.+...|+|++.+| ++-++.. .++. ..+..+-.+..++|..|+.+|+....+...|
T Consensus 80 fKGEVvdgvV~~Vnk~G~F~~~GP--l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr~~~~~i 156 (170)
T KOG3298|consen 80 FKGEVVDGVVTKVNKMGVFARSGP--LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTRVDETEI 156 (170)
T ss_pred cCCcEEEEEEEEEeeeeEEEeccc--eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEEEeeeeE
Confidence 369999999999999999999986 4333221 1111 1111112236889999999999987665554
No 472
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.91 E-value=4.1 Score=49.75 Aligned_cols=144 Identities=13% Similarity=0.100 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHH-HHhCCC------CChHHHHH
Q 000236 1637 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA-LLSLPR------HKHIKFIS 1708 (1810)
Q Consensus 1637 i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ra-lk~~p~------~~~~~~~~ 1708 (1810)
+..--..+|.+..+...+..--.-+...-.+++...+...++++-+ ++..|.+++-+. +...|. .-...+|.
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeec
Confidence 3333334445555554544444444444456666666777777777 777777666552 111111 11235667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 000236 1709 QTAILEFKNGVADRGRSMFEGILSEY------------------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1770 (1810)
Q Consensus 1709 ~~a~l~~~~g~~e~Ar~lfe~al~~~------------------P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~ 1770 (1810)
+++-+.++.|-+..+..+|.+||+.. -++..+.....-++...|.+-.|-+.|..++. ..
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~--vf 365 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH--VF 365 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH--HH
Confidence 77777777777777777777777510 12345666667777777888888888887777 44
Q ss_pred chhHHHHHHHHHH
Q 000236 1771 PKKMKFLFKKYLE 1783 (1810)
Q Consensus 1771 p~~~~~lw~~yl~ 1783 (1810)
..++ .+|.+..+
T Consensus 366 h~nP-rlWLRlAE 377 (696)
T KOG2471|consen 366 HRNP-RLWLRLAE 377 (696)
T ss_pred hcCc-HHHHHHHH
Confidence 4445 57777765
No 473
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.76 E-value=1 Score=52.75 Aligned_cols=127 Identities=13% Similarity=0.094 Sum_probs=93.5
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHH
Q 000236 1530 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1609 (1810)
Q Consensus 1530 ~~~~~e~~~~~~~~~~a~~~fer~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~l 1609 (1810)
...+..+++.++...++++.|.+++..+|.+..++..-+..++.+.....|..-+.+|+...+ |..+-+-|..|.+
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~---Dsa~~ykfrg~A~- 192 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP---DSAKGYKFRGYAE- 192 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCc---ccccccchhhHHH-
Confidence 334455667677799999999999999999999999999999999999999999999996544 3334456777766
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 000236 1610 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1663 (1810)
Q Consensus 1610 e~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk 1663 (1810)
..++++ ++|...|+.|++..-....--.+-.+.-..++.++-+..|++...
T Consensus 193 -rllg~~--e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 193 -RLLGNW--EEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred -HHhhch--HHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 455654 889999999998765543333333444555555666666666554
No 474
>PRK11712 ribonuclease G; Provisional
Probab=88.74 E-value=0.83 Score=57.90 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=53.8
Q ss_pred CCCCCcEEEEEEEEEeec--eEEEEEeCCceeEEEeccccCcc------------cccCcccccCCCCEEEEEEEEEecC
Q 000236 1340 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSED------------HVDNIETIYRAGEKVKVKILKVDKE 1405 (1810)
Q Consensus 1340 ~~~~G~~v~G~V~~i~~~--G~fV~l~~~~v~gl~~~sel~~~------------~~~~~~~~~~~G~~V~~~I~~id~~ 1405 (1810)
...+|+++.|+|.+|.+. ++||+|+. +..|++|.+++... ...+..+.+++||.|-|.|++--..
T Consensus 35 ~~~vGnIY~G~V~~v~pg~~AAFVdIG~-~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~Ke~~~ 113 (489)
T PRK11712 35 RGIVGNIYKGRVSRVLPGMQAAFVDIGL-DKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVKDPLG 113 (489)
T ss_pred ccccccEEEEEEeecCCCCceeEEeeCC-CccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEeCCcC
Confidence 456899999999999874 89999996 89999999987321 0112345699999999999986443
Q ss_pred CCeeEEe
Q 000236 1406 KRRISLG 1412 (1810)
Q Consensus 1406 ~~ri~ls 1412 (1810)
.+.-.++
T Consensus 114 ~KG~~lT 120 (489)
T PRK11712 114 TKGARLT 120 (489)
T ss_pred CCCCeEE
Confidence 3333333
No 475
>PRK11712 ribonuclease G; Provisional
Probab=87.99 E-value=1 Score=57.11 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=45.7
Q ss_pred CCCCEEEEEEEEEeec--eEEEEeCCCcEEEEEcccCCCc--c----------cCCccccCCCCcEEEEEEEE
Q 000236 1252 SPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSDG--Y----------VESPEKEFPIGKLVAGRVLS 1310 (1810)
Q Consensus 1252 ~~G~~v~G~V~~v~~~--G~fV~l~~~v~g~v~~s~ls~~--~----------~~~~~~~f~~G~~V~~~Vl~ 1310 (1810)
-+|.++.|+|.+|.+. ++||++|.+..||+|++|+... + .....+.+++||.|-|-|+.
T Consensus 37 ~vGnIY~G~V~~v~pg~~AAFVdIG~~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~K 109 (489)
T PRK11712 37 IVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVK 109 (489)
T ss_pred ccccEEEEEEeecCCCCceeEEeeCCCccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEe
Confidence 4899999999999774 8999999999999999998421 1 00112347889999888754
No 476
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.78 E-value=9.4 Score=42.07 Aligned_cols=100 Identities=10% Similarity=0.061 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCCh----HHHH
Q 000236 1636 KVHLALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFI 1707 (1810)
Q Consensus 1636 ~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~---~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~----~~~~ 1707 (1810)
..|..++.+|.+.|++++|.+.|.++..... +-.++|+...+..+.. ++..+...+.+|-........ ..+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5677788888888888888888888766542 3356677777777777 777777777776554433111 1222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000236 1708 SQTAILEFKNGVADRGRSMFEGILSEYP 1735 (1810)
Q Consensus 1708 ~~~a~l~~~~g~~e~Ar~lfe~al~~~P 1735 (1810)
..-|...+..+++..|-.+|-.++..+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 2233344456788888887777765554
No 477
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.77 E-value=15 Score=46.35 Aligned_cols=145 Identities=17% Similarity=0.144 Sum_probs=96.4
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------------hcCccchhhHH-HH-HHHHHHHHHHc
Q 000236 1553 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ-----------------TINIREENEKL-NI-WVAYFNLENEY 1613 (1810)
Q Consensus 1553 ~l~~~P~~~~~W~~y~~~~~~~~~~d~Ar~v~eral~-----------------~~~~~~e~e~~-~l-W~~yl~le~~~ 1613 (1810)
+|..+|.+....+..+.+...+|+.+-|+++.+|+|- ..|+.....|. ++ ...||....+-
T Consensus 276 lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~R 355 (665)
T KOG2422|consen 276 LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQR 355 (665)
T ss_pred eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhc
Confidence 4466799999999999999999999999988888884 11221222221 11 22455555666
Q ss_pred CCCCHHHHHHHHHHHHhcCCCH-HH-HHHHHHH-HHHhCChHHHHHHHHHHHH--hcC--CCHHHHHHHHHHHHHh-c--
Q 000236 1614 GNPPEEAVVKVFQRALQYCDPK-KV-HLALLGL-YERTEQNKLADELLYKMIK--KFK--HSCKVWLRRVQRLLKQ-Q-- 1683 (1810)
Q Consensus 1614 g~~~~e~a~~vferAl~~~~~~-~i-~~~l~~~-~~~~g~~~~A~~~~e~~lk--~~~--~~~~~w~~~a~~~~~~-~-- 1683 (1810)
| ...+|.+..+-.++..|.. .+ -..++++ ..+..+|+-..+.++..-. ++. .+...=..+|.||.+. .
T Consensus 356 G--C~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~ 433 (665)
T KOG2422|consen 356 G--CWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEED 433 (665)
T ss_pred C--ChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChh
Confidence 7 6699999999999988873 22 2233343 3567777777777776532 111 1223334667777776 3
Q ss_pred -HHHHHHHHHHHHHhCC
Q 000236 1684 -QEGVQAVVQRALLSLP 1699 (1810)
Q Consensus 1684 -~~~A~~ll~ralk~~p 1699 (1810)
.+.|+.++.+|++.+|
T Consensus 434 ~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 434 DRQSALNALLQALKHHP 450 (665)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 6788999999999888
No 478
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.67 E-value=13 Score=45.93 Aligned_cols=131 Identities=13% Similarity=0.089 Sum_probs=82.3
Q ss_pred HhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhCCCC-ChHHH
Q 000236 1629 LQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRH-KHIKF 1706 (1810)
Q Consensus 1629 l~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~p~~-~~~~~ 1706 (1810)
++.+|.. ...++++.++.++|++..|.++.+||+-.+.......+ ..+......-.++=-|. .+.+ .-..+
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F--~~~~~~~~~g~~rL~~~-----~~eNR~ffla 105 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSF--SPFRSNLTSGNCRLDYR-----RPENRQFFLA 105 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh--hhhhcccccCccccCCc-----cccchHHHHH
Confidence 3456664 78888888999999999999998888865421111000 00000000000000000 0011 11356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCChHHHHHHHHHHHh
Q 000236 1707 ISQTAILEFKNGVADRGRSMFEGILSEYPK-RTDLWSIYLDQE-IRLGDVDLIRGLFERAIS 1766 (1810)
Q Consensus 1707 ~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~-~~~lw~~ya~~e-~k~gd~e~ar~lferal~ 1766 (1810)
...|++.+.+.|-+..|.++..-++..+|. ++---..++|++ .+.++++--..+++....
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 777888888999999999999999999998 666556666766 488888888887777554
No 479
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=87.47 E-value=2 Score=43.88 Aligned_cols=60 Identities=27% Similarity=0.211 Sum_probs=45.6
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCc--cc-----------CCccccCCCCcEEEEEEEEEe
Q 000236 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG--YV-----------ESPEKEFPIGKLVAGRVLSVE 1312 (1810)
Q Consensus 1253 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~--~~-----------~~~~~~f~~G~~V~~~Vl~vd 1312 (1810)
+|+++.|+|++.+..|+.|.|+.--+.+|+...|... |. .+-.-.|..|+.|++||.++.
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslgFFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~~ 75 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLGFFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESEI 75 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEECCEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEecccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEEE
Confidence 6999999999999999999999888999999998842 11 222234679999999998875
No 480
>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis]
Probab=87.46 E-value=1.3 Score=46.35 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=49.5
Q ss_pred CCCCEEEEEEEEEecCceEEEe--------CCCeEEeccCCCCCcc--cccCCCCCcccCCEEEEEEEEE-eCCeEEEE
Q 000236 372 KPGMVVKGKVIAVDSFGAIVQF--------PGGVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVLGV-KSKRITVT 439 (1810)
Q Consensus 372 ~~G~~v~g~V~~v~~~G~~V~~--------~~~v~g~vp~~~ls~~--~~~~~~~~~~vG~~v~~rVl~v-~~~~i~ls 439 (1810)
..|++|.++|.+++..-+-|+| .+.+.|+++...+-.. ...++-+.|++|+.|.|+|++. ....-.||
T Consensus 67 ~~G~IVtarV~~i~~rfAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~~y~LT 145 (193)
T KOG3409|consen 67 FVGAIVTARVSRINLRFAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGSNYLLT 145 (193)
T ss_pred ccCcEEEEEEEeeccceeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCCcEEEE
Confidence 4588888888888776555554 2468999998877543 2345557899999999999987 44455555
No 481
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.45 E-value=1.2e+02 Score=40.67 Aligned_cols=187 Identities=15% Similarity=0.159 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHh-cCCC-H---HHHHHHHHHHH-HhCChHHHHHHHHHHHHhcCC--CHH----HHHHHHHHHHHhcHHH
Q 000236 1619 EAVVKVFQRALQ-YCDP-K---KVHLALLGLYE-RTEQNKLADELLYKMIKKFKH--SCK----VWLRRVQRLLKQQQEG 1686 (1810)
Q Consensus 1619 e~a~~vferAl~-~~~~-~---~i~~~l~~~~~-~~g~~~~A~~~~e~~lk~~~~--~~~----~w~~~a~~~~~~~~~~ 1686 (1810)
..|...++-+++ ...+ . .++++++.++. .+.+++.|+..+++++..... ..+ +-..+++++.++++..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 445666666663 2222 1 88999999876 679999999999999876643 222 2234566666664444
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH--H--HHHHHHcCChH
Q 000236 1687 VQAVVQRALLSLPRHKHIKFISQTAIL-----EFKNGVADRGRSMFEGILSEY--PKRTDLWSI--Y--LDQEIRLGDVD 1755 (1810)
Q Consensus 1687 A~~ll~ralk~~p~~~~~~~~~~~a~l-----~~~~g~~e~Ar~lfe~al~~~--P~~~~lw~~--y--a~~e~k~gd~e 1755 (1810)
|...+++++.......+ ..|...-++ ....+|+..|...++.+.... +.+..+... + +.+..+.+..+
T Consensus 118 a~~~l~~~I~~~~~~~~-~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGH-SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 99999999988765322 223333222 233479999999999987654 344443222 2 22334567777
Q ss_pred HHHHHHHHHHhc--CC------CchhHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHh
Q 000236 1756 LIRGLFERAISL--SL------PPKKMKFLFKKYLEY--EKSVGEEERIEYVKQKAMEYVES 1807 (1810)
Q Consensus 1756 ~ar~lferal~~--~~------~p~~~~~lw~~yl~~--E~~~G~~~~a~~v~~rAl~~v~~ 1807 (1810)
.+.....++... .+ .+.+. ..|...+++ ....|+.+.+.....+--++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL-~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQL-KALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 777777777541 01 22234 467777776 44578888888877777666654
No 482
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.44 E-value=12 Score=41.52 Aligned_cols=73 Identities=11% Similarity=-0.005 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhCCCC--ChHHHHHHHHHHHHHcCCHHHH
Q 000236 1651 NKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKNGVADRG 1723 (1810)
Q Consensus 1651 ~~~A~~~~e~~lk~~-~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~p~~--~~~~~~~~~a~l~~~~g~~e~A 1723 (1810)
-++|+..|-++.... -+++++-+.+|.+|.+.+.++|.++|-++|...+.. -.+.++..+|.+++++++++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345666666665433 256777778888777668888888888888776543 3457777888888888777766
No 483
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.30 E-value=43 Score=36.07 Aligned_cols=138 Identities=14% Similarity=0.079 Sum_probs=100.1
Q ss_pred HHhCChHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCH
Q 000236 1646 ERTEQNKLADELLYKMIKKFKHSC--KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVA 1720 (1810)
Q Consensus 1646 ~~~g~~~~A~~~~e~~lk~~~~~~--~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~--~~~~~~~~a~l~~~~g~~ 1720 (1810)
.+.++.++|...|..+.+..-.+. -..++.+.+..+. +-..|...|..+-+-.|-.. .--+.++-|.++..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 467889999999999887543333 3345666666666 89999999998766543321 114567777788899999
Q ss_pred HHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 000236 1721 DRGRSMFEGIL-SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1783 (1810)
Q Consensus 1721 e~Ar~lfe~al-~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~ 1783 (1810)
+..-+..+-+- ..+|-+......++..-.+.|+++.|++.|+.+......|++...--+..++
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~mld 212 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHHHH
Confidence 99888888754 3466677788888888889999999999999999855666665333333333
No 484
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=87.17 E-value=9.4 Score=45.74 Aligned_cols=148 Identities=16% Similarity=0.031 Sum_probs=95.6
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhCChHHHHHHHHHHHHhc---C---CCHHHHHHHHHHHH
Q 000236 1612 EYGNPPEEAVVKVFQRALQYCDPK-----KVHLALLGLYERTEQNKLADELLYKMIKKF---K---HSCKVWLRRVQRLL 1680 (1810)
Q Consensus 1612 ~~g~~~~e~a~~vferAl~~~~~~-----~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~---~---~~~~~w~~~a~~~~ 1680 (1810)
+.| +-.+-...|+.|++.--.. -||.++++.|.-.++|++|.+....-+... . ...+.--+++..+.
T Consensus 29 k~g--dcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 29 KMG--DCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred hcc--chhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 456 3477788999999876542 789999999999999999988765433211 1 22334445566555
Q ss_pred Hh-cHHHHHHHHHHHHHhCCC----CChHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHH
Q 000236 1681 KQ-QQEGVQAVVQRALLSLPR----HKHIKFISQTAILEFKNGV-------------ADRGRSMFEGILSEYPKRTDLWS 1742 (1810)
Q Consensus 1681 ~~-~~~~A~~ll~ralk~~p~----~~~~~~~~~~a~l~~~~g~-------------~e~Ar~lfe~al~~~P~~~~lw~ 1742 (1810)
-. .+++|.-+..|-|..... --...++++++.+|...|. .++++..|++|+..|-.+..+-.
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 677776666665443211 0112678888998887654 57889999999888776666555
Q ss_pred HHHHHHH-------------HcCChHHHHHHH
Q 000236 1743 IYLDQEI-------------RLGDVDLIRGLF 1761 (1810)
Q Consensus 1743 ~ya~~e~-------------k~gd~e~ar~lf 1761 (1810)
...+-.. -.||++.|....
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H 218 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFH 218 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHH
Confidence 5544332 246777665443
No 485
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.79 E-value=1.1 Score=34.05 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000236 1705 KFISQTAILEFKNGVADRGRSMFEGILSEYP 1735 (1810)
Q Consensus 1705 ~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P 1735 (1810)
.+|..+|.++...|++++|...|+++++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566666666666666666666666666665
No 486
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.77 E-value=1.2 Score=33.44 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC
Q 000236 1637 VHLALLGLYERTEQNKLADELLYKMIKKFKHS 1668 (1810)
Q Consensus 1637 i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~ 1668 (1810)
.++.++.++.+.|++++|.+.|+++++.||++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 34556666666677777777777777666653
No 487
>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription]
Probab=86.67 E-value=3.7 Score=42.95 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=40.1
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcc----cCCc-------cccCCCCcEEEEEEEEEeC
Q 000236 1253 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY----VESP-------EKEFPIGKLVAGRVLSVEP 1313 (1810)
Q Consensus 1253 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~ls~~~----~~~~-------~~~f~~G~~V~~~Vl~vd~ 1313 (1810)
.|+++.|.|+.+++.|+|+++|+ ++.++.---...+| .+|| .+...+|..|+++|+...-
T Consensus 81 KGEVvdgvV~~Vnk~G~F~~~GP-l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr~ 151 (170)
T KOG3298|consen 81 KGEVVDGVVTKVNKMGVFARSGP-LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTRV 151 (170)
T ss_pred CCcEEEEEEEEEeeeeEEEeccc-eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEEE
Confidence 59999999999999999999996 44444322222221 1221 1245678888888887653
No 488
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=86.43 E-value=2 Score=41.34 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=47.2
Q ss_pred CCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEeecC
Q 000236 844 GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP 904 (1810)
Q Consensus 844 ~~g~~v~g~V~~i~~~~v~v~~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~~~ 904 (1810)
..|..|.|.|.++-++-+||+| |+++-++|+....+ .+.|..|..|+.++...+
T Consensus 22 ~~gk~V~G~I~hvv~ddLYIDf--G~KFhcVc~rp~~~-----~~~y~~G~rV~lrLkdlE 75 (104)
T PF10246_consen 22 PEGKIVIGKIFHVVDDDLYIDF--GGKFHCVCKRPAVN-----GEKYVRGSRVRLRLKDLE 75 (104)
T ss_pred ccCCEEEEEEEEEecCceEEEe--CCceeEEEeccccc-----ccccccCCEEEEEECCHh
Confidence 3588999999999999999999 99999999876554 467999999999998765
No 489
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.40 E-value=13 Score=41.02 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 000236 1562 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1641 (1810)
Q Consensus 1562 ~~W~~y~~~~~~~~~~d~Ar~v~eral~~~~~~~e~e~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l 1641 (1810)
..|..++.+|.+.|+++.|.+.|.|+...... ...++.+|+.++.+...+++ ...+.....+|-.......-|...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~d--~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFGD--WSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhccchHHHH
Confidence 56788999999999999999999998865432 33457899999999888884 488888888887665442112221
Q ss_pred H-------HHHHHhCChHHHHHHHHHHHHhc
Q 000236 1642 L-------GLYERTEQNKLADELLYKMIKKF 1665 (1810)
Q Consensus 1642 ~-------~~~~~~g~~~~A~~~~e~~lk~~ 1665 (1810)
. -.+...++|.+|.+.|-.+...|
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 1 12233455666655555555444
No 490
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=86.31 E-value=2.4 Score=40.83 Aligned_cols=60 Identities=22% Similarity=0.415 Sum_probs=48.4
Q ss_pred cccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE
Q 000236 364 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 431 (1810)
Q Consensus 364 ~~~~~~~l~~G~~v~g~V~~v~~~G~~V~~~~~v~g~vp~~~ls~~~~~~~~~~~~vG~~v~~rVl~v 431 (1810)
+++.+.+ ..|-+|.|+|..+.+.-+++++|+.+.++++.... +. ++|..|..|+.|+...
T Consensus 15 ~fi~lG~-~~gk~V~G~I~hvv~ddLYIDfG~KFhcVc~rp~~------~~-~~y~~G~rV~lrLkdl 74 (104)
T PF10246_consen 15 PFIQLGD-PEGKIVIGKIFHVVDDDLYIDFGGKFHCVCKRPAV------NG-EKYVRGSRVRLRLKDL 74 (104)
T ss_pred hhhhcCC-ccCCEEEEEEEEEecCceEEEeCCceeEEEecccc------cc-cccccCCEEEEEECCH
Confidence 3445556 46999999999999999999999999999985432 22 4799999999988544
No 491
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=86.18 E-value=2.7 Score=42.96 Aligned_cols=59 Identities=24% Similarity=0.242 Sum_probs=42.0
Q ss_pred CCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCccc------------c-cCCCCCcccCCEEEEEEEEE
Q 000236 373 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE------------I-VKPGKKFKVGAELVFRVLGV 431 (1810)
Q Consensus 373 ~G~~v~g~V~~v~~~G~~V~~~~~v~g~vp~~~ls~~~------------~-~~~~~~~~vG~~v~~rVl~v 431 (1810)
+|+++.|+|++.++.|+.|+++=.-+-+||...|..-. . ..-+-.|..|+.|++||..+
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslgFFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~ 74 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLGFFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESE 74 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEECCEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEecccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEE
Confidence 59999999999999999999962346899999886321 1 11122358999999999987
No 492
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.67 E-value=26 Score=44.29 Aligned_cols=159 Identities=10% Similarity=0.011 Sum_probs=106.9
Q ss_pred hcCCHHHHHHHHHHHHHhcCccchhh-------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-------------
Q 000236 1573 SMADVEKARSIAERALQTINIREENE-------KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------------- 1632 (1810)
Q Consensus 1573 ~~~~~d~Ar~v~eral~~~~~~~e~e-------~~~lW~~yl~le~~~g~~~~e~a~~vferAl~~~------------- 1632 (1810)
....+++|...|.-|...+++..-.. .++-.+....+....| +.+.|..+.+|+|=..
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qg--D~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQG--DREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhc--chhhHHHHHHHHHHHHHHHhccccccccc
Confidence 45678899999999988666543111 1245666667767777 5577777766666322
Q ss_pred --------CCH-HHH---HHHHHHHHHhCChHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHh--cHHHHHHHHHHH---
Q 000236 1633 --------DPK-KVH---LALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRRVQRLLKQ--QQEGVQAVVQRA--- 1694 (1810)
Q Consensus 1633 --------~~~-~i~---~~l~~~~~~~g~~~~A~~~~e~~lk~~~~-~~~~w~~~a~~~~~~--~~~~A~~ll~ra--- 1694 (1810)
|.+ ..| +.+...+.+-|-+..|.+.+.-+++..|. ++-....+.++|.-. +|+-..++++.+
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 111 233 33445566778899999999999988876 666666666655444 888888887765
Q ss_pred --HHhCCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q 000236 1695 --LLSLPRHKHIKFISQTAILEFKNGV---ADRGRSMFEGILSEYPK 1736 (1810)
Q Consensus 1695 --lk~~p~~~~~~~~~~~a~l~~~~g~---~e~Ar~lfe~al~~~P~ 1736 (1810)
+..+|.. ..=+.+|.++..... ...|+..+.+|++.+|.
T Consensus 408 n~l~~~PN~---~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 408 NKLSQLPNF---GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred ccHhhcCCc---hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 4455554 445566777765554 67899999999988883
No 493
>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis]
Probab=85.57 E-value=3.8 Score=43.14 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=54.6
Q ss_pred cCCCCEEEEEEEEEeCCEEEEEeC--------CCeEEEEEccccCCCCchhhhhcccCCCCcEEEEEEEEEeCCCcEEEE
Q 000236 1036 VSIGQRVTGYVYKVDNEWALLTIS--------RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1107 (1810)
Q Consensus 1036 ~~~G~~v~g~V~~v~~~~~~v~l~--------~~~~g~l~~~~~~~~~~~~~~~~~~~~vG~~v~~~V~~~~~~~~~~~L 1107 (1810)
...|++|++.|..+...++.|+|- ...+|.|+..++-..-.+.-.+.+.|.+||-|.++|++...+. ..-|
T Consensus 66 P~~G~IVtarV~~i~~rfAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~-~y~L 144 (193)
T KOG3409|consen 66 PFVGAIVTARVSRINLRFAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGS-NYLL 144 (193)
T ss_pred CccCcEEEEEEEeeccceeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCC-cEEE
Confidence 478999999999999999888762 2568999987765443333456778999999999999965543 3344
Q ss_pred Ee
Q 000236 1108 VL 1109 (1810)
Q Consensus 1108 s~ 1109 (1810)
+.
T Consensus 145 Tt 146 (193)
T KOG3409|consen 145 TT 146 (193)
T ss_pred EE
Confidence 43
No 494
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.89 E-value=23 Score=44.93 Aligned_cols=140 Identities=14% Similarity=0.073 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000236 1635 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1713 (1810)
Q Consensus 1635 ~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l 1713 (1810)
.+.....+.++++.|.++.|.++-+.--.+| +..++. +.+.|.++. ..-.....|.++|..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rF-----------eLAl~lg~L~~A~~~a-------~~~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHRF-----------ELALQLGNLDIALEIA-------KELDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHH-----------HHHHHCT-HHHHHHHC-------CCCSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHHh-----------HHHHhcCCHHHHHHHH-------HhcCcHHHHHHHHHH
Confidence 5667788888888888888877654433332 233334 555554432 222235789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHH
Q 000236 1714 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1793 (1810)
Q Consensus 1714 ~~~~g~~e~Ar~lfe~al~~~P~~~~lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~ 1793 (1810)
.+++|+.+-|...|+++ .=|..+..++.-.|+.+.-+.+-+.|.. .. +.. ..|..++. .||.++
T Consensus 357 AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~--~~-~~n-~af~~~~~----lgd~~~ 420 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEE--RG-DIN-IAFQAALL----LGDVEE 420 (443)
T ss_dssp HHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHH--TT--HH-HHHHHHHH----HT-HHH
T ss_pred HHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHH--cc-CHH-HHHHHHHH----cCCHHH
Confidence 89999999888888886 3355556667788888888888877776 22 112 23333332 477777
Q ss_pred HHHHHHHHHHHHHhh
Q 000236 1794 IEYVKQKAMEYVEST 1808 (1810)
Q Consensus 1794 a~~v~~rAl~~v~~~ 1808 (1810)
..+++.++-++-++.
T Consensus 421 cv~lL~~~~~~~~A~ 435 (443)
T PF04053_consen 421 CVDLLIETGRLPEAA 435 (443)
T ss_dssp HHHHHHHTT-HHHHH
T ss_pred HHHHHHHcCCchHHH
Confidence 777777776655543
No 495
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.76 E-value=24 Score=38.89 Aligned_cols=136 Identities=13% Similarity=0.075 Sum_probs=91.8
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHH
Q 000236 1649 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMF 1727 (1810)
Q Consensus 1649 g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~p~~~~-~~~~~~~a~l~~~~g~~e~Ar~lf 1727 (1810)
++..+|...|+.+++.-. .+..+.....++....+|...+ .-.-+..|..+...++++.|...+
T Consensus 48 ~q~~~AS~~Y~~~i~~~~---------------ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL 112 (207)
T COG2976 48 EQAQEASAQYQNAIKAVQ---------------AKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQL 112 (207)
T ss_pred HHHHHHHHHHHHHHHHHh---------------cCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 445577788888776431 1111333344444444544321 234556666778899999999999
Q ss_pred HHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000236 1728 EGILSEYPKRTD----LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1803 (1810)
Q Consensus 1728 e~al~~~P~~~~----lw~~ya~~e~k~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~E~~~G~~~~a~~v~~rAl~ 1803 (1810)
+.++.. |++.. +-..++.+...+|.+|.|..+++..-...+.+ .......+.....|+.++|+.-|++|++
T Consensus 113 ~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~----~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 113 KQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA----IVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH----HHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 998743 33322 46778888899999999999998866522222 2445566778889999999999999998
Q ss_pred H
Q 000236 1804 Y 1804 (1810)
Q Consensus 1804 ~ 1804 (1810)
.
T Consensus 188 ~ 188 (207)
T COG2976 188 S 188 (207)
T ss_pred c
Confidence 7
No 496
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.53 E-value=36 Score=42.09 Aligned_cols=111 Identities=17% Similarity=0.062 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCCCH----HHHHHHHHHHHH-hCChHHHHHHHHHHHHhc---CCC----HHHHHHHHHHHHHh--c
Q 000236 1618 EEAVVKVFQRALQYCDPK----KVHLALLGLYER-TEQNKLADELLYKMIKKF---KHS----CKVWLRRVQRLLKQ--Q 1683 (1810)
Q Consensus 1618 ~e~a~~vferAl~~~~~~----~i~~~l~~~~~~-~g~~~~A~~~~e~~lk~~---~~~----~~~w~~~a~~~~~~--~ 1683 (1810)
+..+.+..+-.++..++. .-+++++.++.+ +.+.+.|+..++++..+. |.. ......+++.|... .
T Consensus 25 Ikk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s 104 (629)
T KOG2300|consen 25 IKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQS 104 (629)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCC
Confidence 456666666666666654 456666665443 466677777777766543 222 22333445555444 4
Q ss_pred HHHHHHHHHHHHHhCCCC--ChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000236 1684 QEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKNGVADRGRSMFE 1728 (1810)
Q Consensus 1684 ~~~A~~ll~ralk~~p~~--~~~~~~~~~a~l~~~~g~~e~Ar~lfe 1728 (1810)
+..|+.++++|++.-... -|.++..++|++..-..|++-|.+++.
T Consensus 105 ~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 105 FPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred CchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 556666777776654332 234666666666666666666666643
No 497
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.36 E-value=1.2e+02 Score=44.97 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHh-cHHHHHHHHHHHHHhC---C--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000236 1669 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL---P--RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1742 (1810)
Q Consensus 1669 ~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~---p--~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~lw~ 1742 (1810)
..-|....+.--.. +..+-.-.++|++-.. | +..-.+.|+++|++....|.+++|+..+-.|....+ +.+..
T Consensus 1629 sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~ 1706 (2382)
T KOG0890|consen 1629 SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVL 1706 (2382)
T ss_pred chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHH
Confidence 35566555544333 4444444555654332 2 123358999999999999999999999988877763 57888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCc-----------hhHHHHHH----HHHHHHHHcCC--HHHHHHHHHHHHHHH
Q 000236 1743 IYLDQEIRLGDVDLIRGLFERAISLSLPP-----------KKMKFLFK----KYLEYEKSVGE--EERIEYVKQKAMEYV 1805 (1810)
Q Consensus 1743 ~ya~~e~k~gd~e~ar~lferal~~~~~p-----------~~~~~lw~----~yl~~E~~~G~--~~~a~~v~~rAl~~v 1805 (1810)
..|.++.+.|+-.+|..+++..++..++. +++ .++. .+..|..+.|+ .+.+...|..|.+..
T Consensus 1707 E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~-~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1707 ERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL-LIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhh-hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence 89999999999999999999999743322 223 3343 22233334444 344666777776543
No 498
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.30 E-value=1.2e+02 Score=37.86 Aligned_cols=220 Identities=13% Similarity=0.141 Sum_probs=132.4
Q ss_pred hcCCHHHHHHHHHHHHHhcCccchhh---HHHHHH------HHHHHHHHcCCCCHHHHHHHHHHHHhcC---CCH-----
Q 000236 1573 SMADVEKARSIAERALQTINIREENE---KLNIWV------AYFNLENEYGNPPEEAVVKVFQRALQYC---DPK----- 1635 (1810)
Q Consensus 1573 ~~~~~d~Ar~v~eral~~~~~~~e~e---~~~lW~------~yl~le~~~g~~~~e~a~~vferAl~~~---~~~----- 1635 (1810)
..|-+++|..+-++++.........+ +...-+ ...-+..-.+ +..+|.+-...+.+.+ |..
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~--~~~~al~~i~dm~~w~~r~p~~~Llr~ 364 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRG--DYVEALEEIVDMKNWCTRFPTPLLLRA 364 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 55778888888888886533211111 111111 2222333456 4477777776666655 331
Q ss_pred ---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHH----HHHHHHHHh-cHHHHHHHHHHHHHhCCCCC-----
Q 000236 1636 ---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL----RRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----- 1702 (1810)
Q Consensus 1636 ---~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~----~~a~~~~~~-~~~~A~~ll~ralk~~p~~~----- 1702 (1810)
.++.-++.....-+.+++|...|..+.+.- ...++|. ++|-.|+++ +.+.-.++++.. .|.+.
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ss 440 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSS 440 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchH
Confidence 445555555566789999999999999865 2333343 566666666 555444444442 22211
Q ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHH----HHHHHHcCChHHHHHHHHHHHhc--CCC
Q 000236 1703 ---HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIY----LDQEIRLGDVDLIRGLFERAISL--SLP 1770 (1810)
Q Consensus 1703 ---~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~~P~~~~---lw~~y----a~~e~k~gd~e~ar~lferal~~--~~~ 1770 (1810)
...+++.+|.+.+.++++.+|+..+...++.. +..+ +-..+ ..+....|+.-+++.+..-++.. +.|
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP 519 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence 13678889999999999999999999998765 3222 22222 22334678998999988888763 333
Q ss_pred chhHHHHHHHHH--HHHHHcCC--HHHHHHHHHH
Q 000236 1771 PKKMKFLFKKYL--EYEKSVGE--EERIEYVKQK 1800 (1810)
Q Consensus 1771 p~~~~~lw~~yl--~~E~~~G~--~~~a~~v~~r 1800 (1810)
+-.-.+|..-+ ++....|+ .+...+.|.+
T Consensus 520 -Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 520 -DIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred -CchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 33336776544 45666676 4444444444
No 499
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=83.83 E-value=64 Score=38.20 Aligned_cols=176 Identities=12% Similarity=0.025 Sum_probs=91.9
Q ss_pred HHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000236 1603 WVAYFNLENEYGNP--PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1680 (1810)
Q Consensus 1603 W~~yl~le~~~g~~--~~e~a~~vferAl~~~~~~~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~ 1680 (1810)
-++...|.+.+++. ...++++-..+++...+--..|..++. ++...--...+.+|.+.. ..
T Consensus 20 e~sq~~FlLt~p~~~~~~~~~~e~l~~~Ird~~Map~Ye~lce----~~~i~~D~~~l~~m~~~n-------------ee 82 (393)
T KOG0687|consen 20 ELSQLRFLLTHPEVLGQKAAAREKLLAAIRDEDMAPLYEYLCE----SLVIKLDQDLLNSMKKAN-------------EE 82 (393)
T ss_pred hHHHHHHHHcCccccCcCHHHHHHHHHHHHhcccchHHHHHHh----hcceeccHHHHHHHHHhh-------------HH
Confidence 34445555554432 135667777777766554444443333 222222223333333321 00
Q ss_pred HhcHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH-------H
Q 000236 1681 KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE---YPKRTDLWSIYLDQEI-------R 1750 (1810)
Q Consensus 1681 ~~~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l~~~~g~~e~Ar~lfe~al~~---~P~~~~lw~~ya~~e~-------k 1750 (1810)
+.++-.+..+.|-+.+..+.-.++|.+.|.++.+.||.+.|.+.|.+.... ..-+.|+.+..+.+-+ -
T Consensus 83 --ki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV 160 (393)
T KOG0687|consen 83 --KIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLV 160 (393)
T ss_pred --HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHH
Confidence 344444445555555544555578888888888888888888877776543 2345555444433322 3
Q ss_pred cCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q 000236 1751 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY-EKSVGEEERIEYVKQKAM 1802 (1810)
Q Consensus 1751 ~gd~e~ar~lferal~~~~~p~~~~~lw~~yl~~-E~~~G~~~~a~~v~~rAl 1802 (1810)
...++.|..++|+.-. +..+ .-++.|-.+ -....|+++|..+|-.++
T Consensus 161 ~~~iekak~liE~GgD--WeRr---NRlKvY~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 161 TESIEKAKSLIEEGGD--WERR---NRLKVYQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHHHhCCC--hhhh---hhHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 3456677777777544 3322 233444333 344566777766665543
No 500
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.66 E-value=0.68 Score=54.24 Aligned_cols=80 Identities=13% Similarity=-0.024 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Q 000236 1618 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1695 (1810)
Q Consensus 1618 ~e~a~~vferAl~~~~~~-~i~~~l~~~~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ral 1695 (1810)
.++|.+.|-+|++.+|.. .+|...++++....+...|..-|..++...+++.+-|-..+....-. .+++|...|..|+
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 366666666666666654 55555566665556555555555555555554444333333322223 4555555555554
Q ss_pred Hh
Q 000236 1696 LS 1697 (1810)
Q Consensus 1696 k~ 1697 (1810)
++
T Consensus 210 kl 211 (377)
T KOG1308|consen 210 KL 211 (377)
T ss_pred hc
Confidence 44
Done!