Query 000236
Match_columns 1810
No_of_seqs 576 out of 4563
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 18:26:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000236.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_14-17//hhsearch_pdb/000236hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 1.0 1 1 255.9 27.3 211 1134-1419 6-220 (285)
2 3go5_A Multidomain protein wit 1.0 1 1 235.7 29.4 224 459-723 5-234 (285)
3 4e6h_A MRNA 3'-END-processing 1.0 1 1 223.1 27.3 238 1561-1806 302-572 (679)
4 4e6h_A MRNA 3'-END-processing 1.0 1 1 202.3 33.0 226 1547-1781 329-584 (679)
5 2ond_A Cleavage stimulation fa 1.0 1 1 201.4 28.9 242 1558-1806 5-272 (308)
6 2uy1_A Cleavage stimulation fa 1.0 1 1 200.4 29.6 222 1560-1806 171-415 (493)
7 2ooe_A Cleavage stimulation fa 1.0 1 1 197.0 31.2 238 1561-1807 230-495 (530)
8 2uy1_A Cleavage stimulation fa 1.0 1 1 188.3 23.9 250 1543-1801 64-380 (493)
9 2ooe_A Cleavage stimulation fa 1.0 1 1 185.7 31.4 216 1546-1772 257-495 (530)
10 2ond_A Cleavage stimulation fa 1.0 1 1 183.5 25.1 220 1544-1773 33-274 (308)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=1.00 E-value=1 Score=255.94 Aligned_cols=211 Identities=19% Similarity=0.134 Sum_probs=182.6
Q ss_pred CCCEEEEEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCC
Q ss_conf 99899999999960867399994993499982422343345799999888888999887999899999999632778841
Q 000236 1134 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1213 (1810)
Q Consensus 1134 ~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~i~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~~d~~~~~~~ 1213 (1810)
.|++++|+|++++++ |+||+++ +.+|++|.+|+ |. ++|+.|+|+|+. |. .+
T Consensus 6 ~G~~v~g~V~~~~~~--G~fv~~~-g~egllp~se~------------------~~---~vGdevev~v~~-d~----~~ 56 (285)
T 3go5_A 6 LASFIVGLIIDENDR--FYFVQKD-GQTYALAKEEG------------------QH---TVGDTVKGFAYT-DM----KQ 56 (285)
T ss_dssp TTEEEEEEEEEECSS--EEEEEET-TEEEEEEGGGC------------------CC---CTTSEEEEEEEE-CT----TS
T ss_pred CCCEEEEEEEEEECC--EEEEECC-CEEEEEEHHHC------------------CC---CCCCEEEEEEEE-CC----CC
T ss_conf 999999999999798--8999819-96999998998------------------61---459999999999-89----99
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE-ECEEEEEECC-CCEEEEECCCCCCCCC
Q ss_conf 5999402345688878889998888887521101125899989999999896-1429999699-8179998656798423
Q 000236 1214 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSR-KLDAKVLLSNLSDGYV 1291 (1810)
Q Consensus 1214 ~l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~-~~G~fV~l~~-~v~g~v~~~~ls~~~~ 1291 (1810)
++.+|++.+. +++|+.+.|.|++++ ++|+||++|. +++|+||+++++|...
T Consensus 57 r~iat~~~p~---------------------------~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~ 109 (285)
T 3go5_A 57 KLRLTTLEVT---------------------------ATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKE 109 (285)
T ss_dssp CEEEECSCCC---------------------------SCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGG
T ss_pred CEEEECCCCC---------------------------CCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEHHHCCCCCC
T ss_conf 8998612534---------------------------5699999999999856854999989877089999899976434
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECC-CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECEEEE-EEECCCEE
Q ss_conf 8966457999599999999947999999997327-651121011144678789969999999975141899-99479435
Q 000236 1292 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI-TIENTNLV 1369 (1810)
Q Consensus 1292 ~~~~~~f~~G~~V~~~Vl~id~~~~ri~lSlk~~-~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~GvFV-~l~~~~v~ 1369 (1810)
. .+++||.+.++ +.+|+ ++||.+|+|+. ..+||.. ....+++|++|+|+|+++++||+|| .+++ ++.
T Consensus 110 ~----~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~~----~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~-g~~ 178 (285)
T 3go5_A 110 L----WPKKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLAR----PAYNNMQNQNWPAIVYRLKLSGTFVYLPEN-NML 178 (285)
T ss_dssp G----SCCTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHCC----CCCSCCTTCEEEEEEEEEETTEEEEEETTT-TEE
T ss_pred C----CCCCCCEEEEE-EEECC-CCCEEEEEHHHHHCCHHHH----HHHHCCCCCEEEEEEEEEECCCEEEEEECC-CEE
T ss_conf 6----66899999999-99999-9969998203110164464----465379999999999999179479999289-859
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCC
Q ss_conf 97750235721225922113789799999998736898259830344457
Q 000236 1370 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1419 (1810)
Q Consensus 1370 Gl~~~sels~~~~~~~~~~~~~Gd~V~~kIl~id~~~~ri~lslK~~~~~ 1419 (1810)
||+|+||+++ .+++||.|+|+|+++|++++||+||+|+..++
T Consensus 179 Glih~SEl~~--------~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~ 220 (285)
T 3go5_A 179 GFIHPSERYA--------EPRLGQVLDARVIGFREVDRTLNLSLKPRSFE 220 (285)
T ss_dssp EEECGGGCSS--------CCCTTCEEEEEEEEEETTTTEEEEECSCCCCC
T ss_pred EEEEHHHCCC--------CCCCCCEEEEEEEEEECCCCEEEEEECHHHHH
T ss_conf 9989898426--------69999999999999988999599993744511
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=1.00 E-value=1 Score=235.66 Aligned_cols=224 Identities=17% Similarity=0.112 Sum_probs=188.8
Q ss_pred CCCCEEEEEEEEEEECEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 79969999999996021899992994998306555789889997686679799999999807999699997518997640
Q 000236 459 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 538 (1810)
Q Consensus 459 ~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~~~~~~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~l~lS~k~~~~~~~~ 538 (1810)
..|+++.|+|+++.++|+||++ ++..||+|.+++.. ++|+.++|.|+ .|. ++|+.+|.+.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~-~g~egllp~se~~~----------~vGdevev~v~-~d~-~~r~iat~~~------- 64 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQK-DGQTYALAKEEGQH----------TVGDTVKGFAY-TDM-KQKLRLTTLE------- 64 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEE-TTEEEEEEGGGCCC----------CTTSEEEEEEE-ECT-TSCEEEECSC-------
T ss_pred CCCCEEEEEEEEEECCEEEEEC-CCEEEEEEHHHCCC----------CCCCEEEEEEE-ECC-CCCEEEECCC-------
T ss_conf 6999999999999798899981-99699999899861----------45999999999-989-9989986125-------
Q ss_pred CCCCCCCCEEEEEEEEEE-CCCEEEEEEECC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEC
Q ss_conf 000369986999999990-381799998669-533999466456763311112212358974754799642798399942
Q 000236 539 DDLVKLGSLVSGVVDVVT-PNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 616 (1810)
Q Consensus 539 ~~~~~~G~iv~g~V~~~~-~~g~~V~i~~~~-~v~G~i~~~~lsd~~~~~~~~~~~~k~G~~i~~vl~id~~~~~~~ls~ 616 (1810)
+.+++|+++.|+|++++ ++|+||.+ +. +++||||.++++|.. ..++++|+++...+.+|. ++|+.+|+
T Consensus 65 -p~~~~G~~~~g~V~~v~~~~GaFVdi--G~~~~d~lvp~sel~~~~------~~~~~~Gd~v~v~l~iD~-~~Ri~ls~ 134 (285)
T 3go5_A 65 -VTATQDQFGWGRVTEVRKDLGVFVDT--GLPDKEIVVSLDILPELK------ELWPKKGDQLYIRLEVDK-KDRIWGLL 134 (285)
T ss_dssp -CCSCSSSCEEEEEEEEETTTEEEEEC--SCTTCCEEEEGGGSCSSG------GGSCCTTCEEEEEEEECT-TSCEEEEE
T ss_pred -CCCCCCCEEEEEEEEECCCCEEEEEE--CCCCCEEEEEHHHCCCCC------CCCCCCCCEEEEEEEECC-CCCEEEEE
T ss_conf -34569999999999985685499998--987708999989997643------466689999999999999-99699982
Q ss_pred CCH-HCCHHCCCCCCCCCCCCCCEEEEEEEEEECCEEEE-EECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 301-00010017874355789988999999992673899-9799849973078658532359545867798999999985
Q 000236 617 KYS-LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV-RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 694 (1810)
Q Consensus 617 K~~-l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV-~f~~gi~Glv~~s~l~~~~~~~~~~~~~~Gq~V~~~V~~i 694 (1810)
|+. ..++|... .+.+++|+.+.|+|.+++++|+|| .+.+++.||+|+|++++ .+++||.|+|+|+++
T Consensus 135 k~~~~~~~~~~~---~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~--------~l~~Gd~v~~~V~~i 203 (285)
T 3go5_A 135 AYQEDFQRLARP---AYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA--------EPRLGQVLDARVIGF 203 (285)
T ss_dssp CCHHHHHHHCCC---CCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS--------CCCTTCEEEEEEEEE
T ss_pred HHHHHCCHHHHH---HHHCCCCCEEEEEEEEEECCCEEEEEECCCEEEEEEHHHCCC--------CCCCCCEEEEEEEEE
T ss_conf 031101644644---653799999999999991794799992898599989898426--------699999999999999
Q ss_pred ECCCCEEEEEECCCCCCC--CCHHHHHHHHH
Q ss_conf 089983999613454578--87035788777
Q 000236 695 NSETGRITLSLKQSCCSS--TDASFMQEHFL 723 (1810)
Q Consensus 695 d~~~~ri~Lslk~~~~~~--~~~~~~~~~~~ 723 (1810)
+++++|+.||+|+..... .++..+..|+.
T Consensus 204 d~~d~kI~LSlk~~~~~~~~~~a~~il~~L~ 234 (285)
T 3go5_A 204 REVDRTLNLSLKPRSFEMLENDAQMILTYLE 234 (285)
T ss_dssp ETTTTEEEEECSCCCCCCCCHHHHHHHHHHH
T ss_pred ECCCCEEEEEECHHHHHCCCHHHHHHHHHHH
T ss_conf 8899959999374451122348999999998
No 3
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=223.08 Aligned_cols=238 Identities=14% Similarity=0.229 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHCC
Q ss_conf 999999999999648-------99999999999997517600011799999999999990999989999-9999998509
Q 000236 1561 SFVWIKYMAFMLSMA-------DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV-KVFQRALQYC 1632 (1810)
Q Consensus 1561 ~~~W~~y~~~~~~~~-------e~d~Ar~v~eral~~~~~~~e~e~~~iW~~~l~le~~~g~~~~e~a~-~vf~rAl~~~ 1632 (1810)
..+|..|+.|+.+.. ...+.+.+|++|+..+|... .+|+.|+.++...++ .+.|+ ++|+||+..+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~-----~lW~~ya~~~~~~~~--~~~a~r~il~rAi~~~ 374 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP-----EIWFNMANYQGEKNT--DSTVITKYLKLGQQCI 374 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH-----HHHHHHHHHHHHHSC--CTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHC
T ss_conf 999999999998487666410168999999999998769977-----999999999986286--7899999999999868
Q ss_pred CCH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-----------CC-----------CHHHHHHHHHHHHHH-CHHHHH
Q ss_conf 989-999999999999178499999999999963-----------79-----------899999999999971-699999
Q 000236 1633 DPK-KVHLALLGLYERTEQNKLADELLYKMIKKF-----------KH-----------SCKVWLRRVQRLLKQ-QQEGVQ 1688 (1810)
Q Consensus 1633 ~~~-~i~~~l~~i~~~~g~~~~A~~~~e~~lk~~-----------~~-----------~~~~w~~~~~~~~~~-~~~~A~ 1688 (1810)
|.. .+|+.++.++++.++++.|+.+|++++... |. ...+|..|+.++.+. ..+.|+
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98779999999999984889999999999998878776666411674124555411336999999999998708889999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999999972999775999999999999859-9899999999988759999999999999999929968999999999936
Q 000236 1689 AVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1767 (1810)
Q Consensus 1689 ~ll~ral~~~p~~~~~~~~~~~a~~e~~~g-~~e~Ar~lfe~al~~~P~~~~iw~~ya~le~k~gd~e~Ar~lferal~~ 1767 (1810)
.+|.+|++..|... ..+|+.+|.+++..+ ++++||.+|+++++.+|++..+|..|++++...|+.++||.+|+||+..
T Consensus 455 ~vf~~A~~~~~~~~-~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 455 KIFGKCRRLKKLVT-PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHTGGGSC-THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999997368988-69999999999996898899999999999878995399999999998089778999999999871
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 999043999999999999991999999999999999988
Q 000236 1768 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806 (1810)
Q Consensus 1768 ~~~~k~~k~lw~~yl~~E~~~G~~~~a~~v~~rAle~v~ 1806 (1810)
..+++..+.+|..|+.||.++|+.+.+..+..|+.+..-
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 688789999999999999986999999999999998689
No 4
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=202.29 Aligned_cols=226 Identities=9% Similarity=0.048 Sum_probs=188.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999998709999999999999999648999999-99999997517600011799999999999990999989999999
Q 000236 1547 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR-SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1625 (1810)
Q Consensus 1547 ~~~~erll~~~P~~~~~W~~y~~~~~~~~e~d~Ar-~v~eral~~~~~~~e~e~~~iW~~~l~le~~~g~~~~e~a~~vf 1625 (1810)
...|+++|...|.++.+|+.|+.++...++.+.|+ .+++||+..+|... .+|++|+.++...+ +.+.|+++|
T Consensus 329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~-----~Lwl~~a~~ee~~~--~~e~aR~iy 401 (679)
T 4e6h_A 329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA-----VLAFSLSEQYELNT--KIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHC--CHHHHHHHH
T ss_conf 99999999876997799999999998628678999999999998689877-----99999999999848--899999999
Q ss_pred HHHHHCC-----------CC------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Q ss_conf 9998509-----------98------------999999999999917849999999999996-37989999999999997
Q 000236 1626 QRALQYC-----------DP------------KKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLRRVQRLLK 1681 (1810)
Q Consensus 1626 ~rAl~~~-----------~~------------~~i~~~l~~i~~~~g~~~~A~~~~e~~lk~-~~~~~~~w~~~~~~~~~ 1681 (1810)
+++++.. |. ..+|+.++.+..+.+..+.|+.+|.++++. .+....+|..++.++.+
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99998878776666411674124555411336999999999998708889999999999973689886999999999999
Q ss_pred H--CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHCCCHHH
Q ss_conf 1--69999999999997299977599999999999985998999999999887599---999999999999999299689
Q 000236 1682 Q--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP---KRTDLWSIYLDQEIRLGDVDL 1756 (1810)
Q Consensus 1682 ~--~~~~A~~ll~ral~~~p~~~~~~~~~~~a~~e~~~g~~e~Ar~lfe~al~~~P---~~~~iw~~ya~le~k~gd~e~ 1756 (1810)
. +.+.|+.+|+++++.+|.. ..+|..|++++...|+.++||.+|++++...| +...+|..|+++|.+.|+.+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~~p~~--~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKYFATD--GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTSCCHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 6898899999999999878995--39999999999808977899999999987168878999999999999998699999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999993699904399999999
Q 000236 1757 IRGLFERAISLSLPPKKMKFLFKKY 1781 (1810)
Q Consensus 1757 Ar~lferal~~~~~~k~~k~lw~~y 1781 (1810)
++.+++|++........++.+..+|
T Consensus 560 ~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999998689973899999984
No 5
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=201.42 Aligned_cols=242 Identities=16% Similarity=0.266 Sum_probs=207.5
Q ss_pred CCCHHHHHHHHHHHHHC----CCH----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-------CCCC-----C
Q ss_conf 99999999999999964----899----99999999999751760001179999999999999-------0999-----9
Q 000236 1558 PNSSFVWIKYMAFMLSM----ADV----EKARSIAERALQTINIREENEKLNIWVAYFNLENE-------YGNP-----P 1617 (1810)
Q Consensus 1558 P~~~~~W~~y~~~~~~~----~e~----d~Ar~v~eral~~~~~~~e~e~~~iW~~~l~le~~-------~g~~-----~ 1617 (1810)
|.+..+|..|+.++.+. .+. ++|+.+|++|+...|... .+|..|+.++.. .|++ .
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~-----~~w~~~~~~~~~~~~~l~~~g~~~~~~~~ 79 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHCHHHHHCCCHHHCCCC
T ss_conf 9999999999999874966688558999999999999998768987-----99999999998735343312540000001
Q ss_pred HHHHHHHHHHHHH-CCCCH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHH-CHHHHHHHHHH
Q ss_conf 8999999999985-09989-99999999999917849999999999996379899-999999999971-69999999999
Q 000236 1618 EEAVVKVFQRALQ-YCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK-VWLRRVQRLLKQ-QQEGVQAVVQR 1693 (1810)
Q Consensus 1618 ~e~a~~vf~rAl~-~~~~~-~i~~~l~~i~~~~g~~~~A~~~~e~~lk~~~~~~~-~w~~~~~~~~~~-~~~~A~~ll~r 1693 (1810)
.++|+.+|+||++ ..|.. .+|..++.++...|++++|+.+|+++++..|.+.. +|..|+.++.+. ++++|+.+|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 69999999999998595247999998999885589999999999998153667358999999999984488999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCC
Q ss_conf 99729997759999999999998-5998999999999887599999999999999999299689999999999369-990
Q 000236 1694 ALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS-LPP 1771 (1810)
Q Consensus 1694 al~~~p~~~~~~~~~~~a~~e~~-~g~~e~Ar~lfe~al~~~P~~~~iw~~ya~le~k~gd~e~Ar~lferal~~~-~~~ 1771 (1810)
|++..|... .+|..++.+++. .|++++|+.+|++++..+|++..+|..|++++.+.|+.++|+.+|++++... ++|
T Consensus 160 a~~~~p~~~--~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDARTRH--HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTCCT--HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHCCCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 985689887--999999999998759979999999999876788299999999999988998999999999974568998
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 43999999999999991999999999999999988
Q 000236 1772 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806 (1810)
Q Consensus 1772 k~~k~lw~~yl~~E~~~G~~~~a~~v~~rAle~v~ 1806 (1810)
.....+|..|+.++..+|+.+.+..++.+|++..-
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 99999999999999984998999999999998765
No 6
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=200.42 Aligned_cols=222 Identities=17% Similarity=0.197 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHHHHCC---C----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999999999648---9----99999999999975176000117999999999999909999899999999998509
Q 000236 1560 SSFVWIKYMAFMLSMA---D----VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1632 (1810)
Q Consensus 1560 ~~~~W~~y~~~~~~~~---e----~d~Ar~v~eral~~~~~~~e~e~~~iW~~~l~le~~~g~~~~e~a~~vf~rAl~~~ 1632 (1810)
+..+|..|+.+..... + .++++.+|++|+..+|... .+|+.|+.++...+ +.+.|+.+|+||++.
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~-----~lW~~ya~~~~~~~--~~~~ar~i~erAi~~- 242 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE-----EVYFFYSEYLIGIG--QKEKAKKVVERGIEM- 242 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH-----HHHHHHHHHHHHTT--CHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHCC--CHHHHHHHHHHHHHC-
T ss_conf 2999999999986298657621259999999999987289989-----99999999998759--989999999998718-
Q ss_pred CCH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHH-CHHHHHHHHHHHHHH
Q ss_conf 989-999999999999178499999999999963-------------79899999999999971-699999999999972
Q 000236 1633 DPK-KVHLALLGLYERTEQNKLADELLYKMIKKF-------------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1697 (1810)
Q Consensus 1633 ~~~-~i~~~l~~i~~~~g~~~~A~~~~e~~lk~~-------------~~~~~~w~~~~~~~~~~-~~~~A~~ll~ral~~ 1697 (1810)
|.. .+|+.++.+... + +.++++...+ +....+|..|+.++.+. ..+.|+.+|++| .
T Consensus 243 P~~~~l~~~y~~~~e~----~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A--~ 313 (493)
T 2uy1_A 243 SDGMFLSLYYGLVMDE----E---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL--G 313 (493)
T ss_dssp CCSSHHHHHHHHHTTC----T---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--T
T ss_pred CCCHHHHHHHHHHCCH----H---HHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--H
T ss_conf 9969999998765105----6---89999999998611101223204561899999999998717889999999986--2
Q ss_pred CCCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 999775999999999999859-9899999999988759999999999999999929968999999999936999043999
Q 000236 1698 LPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1776 (1810)
Q Consensus 1698 ~p~~~~~~~~~~~a~~e~~~g-~~e~Ar~lfe~al~~~P~~~~iw~~ya~le~k~gd~e~Ar~lferal~~~~~~k~~k~ 1776 (1810)
.|... ..+|..+|.+++..+ ++++||.+|+++++.+|+++++|..|++++.+.|+.++||.+|+++. +.. .
T Consensus 314 ~~~~~-~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~-~ 385 (493)
T 2uy1_A 314 NEGVG-PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTS-R 385 (493)
T ss_dssp TSCCC-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBH-H
T ss_pred CCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH------HHH-H
T ss_conf 77888-599999999999878996899999999998789978999999999987598777999999999------899-9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999991999999999999999988
Q 000236 1777 LFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1806 (1810)
Q Consensus 1777 lw~~yl~~E~~~G~~~~a~~v~~rAle~v~ 1806 (1810)
+|..|++||..+|+.+.++.+++++++.+.
T Consensus 386 lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 386 MWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 999999999977999999999999999845
No 7
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=196.95 Aligned_cols=238 Identities=16% Similarity=0.265 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHHCC----CH----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-------CCCCCHH------
Q ss_conf 999999999999648----99----99999999999751760001179999999999999-------0999989------
Q 000236 1561 SFVWIKYMAFMLSMA----DV----EKARSIAERALQTINIREENEKLNIWVAYFNLENE-------YGNPPEE------ 1619 (1810)
Q Consensus 1561 ~~~W~~y~~~~~~~~----e~----d~Ar~v~eral~~~~~~~e~e~~~iW~~~l~le~~-------~g~~~~e------ 1619 (1810)
..+|..|+.+..... +. .++..+|++|+...|... .+|+.|+.++.. .|+. +
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~-----~~w~~~~~~~~~~~~~~~~~g~~--~~a~~~~ 302 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDM--NNAKLFS 302 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHTTTCC--HHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHCHHHHHCCCH--HHHHHHH
T ss_conf 9999999999870975577512688999999999998578977-----99999999999835465532651--2212114
Q ss_pred -HHHHHHHHHHH-CCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHH-CHHHHHHHHHHH
Q ss_conf -99999999985-0998-99999999999991784999999999999637989-9999999999971-699999999999
Q 000236 1620 -AVVKVFQRALQ-YCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-KVWLRRVQRLLKQ-QQEGVQAVVQRA 1694 (1810)
Q Consensus 1620 -~a~~vf~rAl~-~~~~-~~i~~~l~~i~~~~g~~~~A~~~~e~~lk~~~~~~-~~w~~~~~~~~~~-~~~~A~~ll~ra 1694 (1810)
.|+.+|+||++ .+|. ..+|..++.++.+.|++++|+.+|+++++..|.++ .+|..|+.++.+. +.++|+.+|++|
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999999986866579999999999863889999999999857645683099999999999806889999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCH
Q ss_conf 972999775999999999999-85998999999999887599999999999999999299689999999999369-9904
Q 000236 1695 LLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS-LPPK 1772 (1810)
Q Consensus 1695 l~~~p~~~~~~~~~~~a~~e~-~~g~~e~Ar~lfe~al~~~P~~~~iw~~ya~le~k~gd~e~Ar~lferal~~~-~~~k 1772 (1810)
++..|... .++...+.+++ ..|++++|+.+|+++++.+|++.++|..|++++.+.|+.++||.+|++++... .+|.
T Consensus 383 l~~~~~~~--~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDARTRH--HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCTTCCT--HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HHCCCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 73557750--8999999999988078359999999999878997899999999998679886699999999841579878
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 39999999999999919999999999999999884
Q 000236 1773 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1807 (1810)
Q Consensus 1773 ~~k~lw~~yl~~E~~~G~~~~a~~v~~rAle~v~~ 1807 (1810)
....+|..|+.||..+|+.+.+..++.||++....
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH
T ss_conf 89999999999999829999999999999987731
No 8
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=188.33 Aligned_cols=250 Identities=14% Similarity=0.114 Sum_probs=158.5
Q ss_pred CCCCHHHHHHHHHC---CCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99948999999870---9999999999999999----6489999999999999751760001179999999999999099
Q 000236 1543 APRTPDEFERLVRS---SPNSSFVWIKYMAFML----SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1615 (1810)
Q Consensus 1543 ~~~a~~~~erll~~---~P~~~~~W~~y~~~~~----~~~e~d~Ar~v~eral~~~~~~~e~e~~~iW~~~l~le~~~g~ 1615 (1810)
.......|++++.. +|++..+|..|+.|+. .+++++.+|.+|+||+. +|... ...+|..|..++...+.
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~---~~~lw~~Y~~fE~~~~~ 139 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGS---LSELWKDFENFELELNK 139 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTT---HHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-CHHHH---HHHHHHHHHHHHHHHCC
T ss_conf 999999999999876888661899999999997360656799999999999982-73546---99999999999987461
Q ss_pred C-----------CHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHC--C-----HHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9-----------98999999999985099--8999999999999917--8-----4999999999999637989999999
Q 000236 1616 P-----------PEEAVVKVFQRALQYCD--PKKVHLALLGLYERTE--Q-----NKLADELLYKMIKKFKHSCKVWLRR 1675 (1810)
Q Consensus 1616 ~-----------~~e~a~~vf~rAl~~~~--~~~i~~~l~~i~~~~g--~-----~~~A~~~~e~~lk~~~~~~~~w~~~ 1675 (1810)
. ....|+.+|+.+....+ ...+|..|+.+..... . ...+..+|++++..+|..+.+|+.|
T Consensus 140 ~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~y 219 (493)
T 2uy1_A 140 ITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFY 219 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 01788999981788999999999998874342999999999986298657621259999999999987289989999999
Q ss_pred HHHHHHH-CHHHHHHHHHHHHHHCCCCCH--------------------------------------HHHHHHHHHHHHH
Q ss_conf 9999971-699999999999972999775--------------------------------------9999999999998
Q 000236 1676 VQRLLKQ-QQEGVQAVVQRALLSLPRHKH--------------------------------------IKFISQTAILEFK 1716 (1810)
Q Consensus 1676 ~~~~~~~-~~~~A~~ll~ral~~~p~~~~--------------------------------------~~~~~~~a~~e~~ 1716 (1810)
+.++.+. +.++|+.+|+||+.. |.... ..+|..|+.++.+
T Consensus 220 a~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 220 SEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99998759989999999998718-99699999987651056899999999986111012232045618999999999987
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 599899999999988759999999999999999929-9689999999999369990439999999999999919999999
Q 000236 1717 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1795 (1810)
Q Consensus 1717 ~g~~e~Ar~lfe~al~~~P~~~~iw~~ya~le~k~g-d~e~Ar~lferal~~~~~~k~~k~lw~~yl~~E~~~G~~~~a~ 1795 (1810)
.++.++||.+|+++ ...+...++|..++.+|...+ +.++||.+|++++. ..|+.+ .+|..|++||...|+.+.++
T Consensus 299 ~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~--~~~~~~-~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL--KHPDST-LLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHTCHHHHH
T ss_pred CCCHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH-HHHHHHHHHHHHCCCHHHHH
T ss_conf 17889999999986-277888599999999999878996899999999998--789978-99999999998759877799
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000236 1796 YVKQKA 1801 (1810)
Q Consensus 1796 ~v~~rA 1801 (1810)
.+|+++
T Consensus 375 ~l~er~ 380 (493)
T 2uy1_A 375 ALFKRL 380 (493)
T ss_dssp HHHHHS
T ss_pred HHHHHH
T ss_conf 999999
No 9
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=185.68 Aligned_cols=216 Identities=16% Similarity=0.203 Sum_probs=145.5
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHH
Q ss_conf 4899999987099999999999999996-------48999-------99999999997-517600011799999999999
Q 000236 1546 TPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADVE-------KARSIAERALQ-TINIREENEKLNIWVAYFNLE 1610 (1810)
Q Consensus 1546 a~~~~erll~~~P~~~~~W~~y~~~~~~-------~~e~d-------~Ar~v~eral~-~~~~~~e~e~~~iW~~~l~le 1610 (1810)
+...|++++..+|+++.+|+.|+.++.+ .|+++ +|+.+|++|++ ..|.. ..+|..|+.++
T Consensus 257 a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~-----~~l~~~~~~~~ 331 (530)
T 2ooe_A 257 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-----MLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHH
T ss_conf 9999999998578977999999999998354655326512212114999999999999868665-----79999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HH-CHHH
Q ss_conf 9909999899999999998509989--999999999999178499999999999963798999999999999-71-6999
Q 000236 1611 NEYGNPPEEAVVKVFQRALQYCDPK--KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQ-QQEG 1686 (1810)
Q Consensus 1611 ~~~g~~~~e~a~~vf~rAl~~~~~~--~i~~~l~~i~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~~~~~~-~~-~~~~ 1686 (1810)
...| +.++|+.+|++|++..|.. .+|..++.++.+.|++++|+.+|+++++..|....+|...+.+.. .. ++++
T Consensus 332 ~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 332 ESRM--KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp HHTT--CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred HHCC--CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 8638--89999999999857645683099999999999806889999999999735577508999999999988078359
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999999999729997759999999999998599899999999988759999----9999999999999299689999999
Q 000236 1687 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFE 1762 (1810)
Q Consensus 1687 A~~ll~ral~~~p~~~~~~~~~~~a~~e~~~g~~e~Ar~lfe~al~~~P~~----~~iw~~ya~le~k~gd~e~Ar~lfe 1762 (1810)
|+.+|+++++..|.+ ..+|..|+.++...|+.++||.+|++++...|.+ ..+|..|+.+|...|+.+.+..++.
T Consensus 410 A~~~~e~al~~~p~~--~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 410 AFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999878997--899999999998679886699999999841579878899999999999998299999999999
Q ss_pred HHHHCCCCCH
Q ss_conf 9993699904
Q 000236 1763 RAISLSLPPK 1772 (1810)
Q Consensus 1763 ral~~~~~~k 1772 (1810)
+++. ..|+
T Consensus 488 r~~~--~~p~ 495 (530)
T 2ooe_A 488 RRFT--AFRE 495 (530)
T ss_dssp HHHH--HTHH
T ss_pred HHHH--HCCH
T ss_conf 9998--7731
No 10
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=183.49 Aligned_cols=220 Identities=17% Similarity=0.241 Sum_probs=196.1
Q ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHHHH-------CCCH-------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 994899999987099999999999999996-------4899-------99999999999751760001179999999999
Q 000236 1544 PRTPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADV-------EKARSIAERALQTINIREENEKLNIWVAYFNL 1609 (1810)
Q Consensus 1544 ~~a~~~~erll~~~P~~~~~W~~y~~~~~~-------~~e~-------d~Ar~v~eral~~~~~~~e~e~~~iW~~~l~l 1609 (1810)
.++...|++++..+|+++.+|+.|+.++.. .|++ ++|+.+|+||+..+++.. ..+|..|+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~----~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----MLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCCC----HHHHHHHHHH
T ss_conf 999999999998768987999999999987353433125400000016999999999999859524----7999998999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCH-H-HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-H-CHH
Q ss_conf 99909999899999999998509989-9-999999999991784999999999999637989999999999997-1-699
Q 000236 1610 ENEYGNPPEEAVVKVFQRALQYCDPK-K-VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-Q-QQE 1685 (1810)
Q Consensus 1610 e~~~g~~~~e~a~~vf~rAl~~~~~~-~-i~~~l~~i~~~~g~~~~A~~~~e~~lk~~~~~~~~w~~~~~~~~~-~-~~~ 1685 (1810)
+...| +.++|+.+|++|++..|.. . +|..++.++.+.|++++|+.+|+++++..|....+|..++.+... . +++
T Consensus 109 ~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 109 EESRM--KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHTT--CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred HHHCC--CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH
T ss_conf 88558--9999999999998153667358999999999984488999999999985689887999999999998759979
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999999972999775999999999999859989999999998875---99-99999999999999929968999999
Q 000236 1686 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE---YP-KRTDLWSIYLDQEIRLGDVDLIRGLF 1761 (1810)
Q Consensus 1686 ~A~~ll~ral~~~p~~~~~~~~~~~a~~e~~~g~~e~Ar~lfe~al~~---~P-~~~~iw~~ya~le~k~gd~e~Ar~lf 1761 (1810)
+|+.+|+++++.+|.+ ..+|..++.++...|++++|+.+|++++.. .| +...+|..|+.++.+.|+.+.|+.++
T Consensus 187 ~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999998767882--99999999999988998999999999974568998999999999999999849989999999
Q ss_pred HHHHHCCCCCHH
Q ss_conf 999936999043
Q 000236 1762 ERAISLSLPPKK 1773 (1810)
Q Consensus 1762 eral~~~~~~k~ 1773 (1810)
++++. ..|+.
T Consensus 265 ~~a~~--~~p~~ 274 (308)
T 2ond_A 265 KRRFT--AFREE 274 (308)
T ss_dssp HHHHH--HTTTT
T ss_pred HHHHH--HCCCC
T ss_conf 99998--76530
Done!