Your job contains 1 sequence.
>000237
MAQQSSRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDT
RVAAAHAIGAIAQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFT
SFDLNKVLEFGALLASGGQEYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDM
IKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAK
ISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEHEGDGLWPFR
SFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGPDGALNVEFKDKDSIT
MKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNISIKVDDSGCNL
PAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGEKGDFLNSETLKNLPEN
SELMNWLKLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAA
FKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAG
LEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLA
EIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSI
TSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCS
DRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAK
MRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNTRVVTASALGIFASKLH
EGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQWL
LDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEIDVES
LSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHVTVS
ALVAAAVVWMSELPARLNPIILPLMASIKREQEEKLQEKAAEALAELIADCIARKPSPND
KLIKNICSLTSMDPCETPQAAAMGSMEIIDDQDFLSFGSSTGKQKSRAHMLAGGEDRSRV
EGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDP
QILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTI
NVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCD
QSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGT
ELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEE
IHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDV
VRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWS
LFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTK
DEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAK
ASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKASSLSQISC
SSGDNG
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000237
(1806 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-021025-1 - symbol:btaf1 "BTAF1 RNA polymera... 1292 1.5e-239 5
DICTYBASE|DDB_G0286219 - symbol:DDB_G0286219 "putative TB... 1286 2.9e-236 4
UNIPROTKB|O14981 - symbol:BTAF1 "TATA-binding protein-ass... 1276 3.0e-233 5
RGD|1564130 - symbol:Btaf1 "BTAF1 RNA polymerase II, B-TF... 1279 1.9e-231 5
UNIPROTKB|F1SCA0 - symbol:BTAF1 "Uncharacterized protein"... 1268 2.3e-229 5
UNIPROTKB|F1NHJ5 - symbol:BTAF1 "Uncharacterized protein"... 1266 2.0e-222 5
UNIPROTKB|E2QWL4 - symbol:BTAF1 "Uncharacterized protein"... 1283 2.2e-216 4
UNIPROTKB|F1N507 - symbol:Bt.112326 "Uncharacterized prot... 1270 2.5e-213 4
CGD|CAL0002614 - symbol:orf19.4502 species:5476 "Candida ... 1323 1.9e-187 4
FB|FBgn0022787 - symbol:Hel89B "Helicase 89B" species:722... 1180 2.1e-184 5
ASPGD|ASPL0000018137 - symbol:AN4187 species:162425 "Emer... 1411 2.4e-179 3
UNIPROTKB|I3LTQ1 - symbol:I3LTQ1 "Uncharacterized protein... 1020 1.9e-168 4
UNIPROTKB|I3LD21 - symbol:I3LD21 "Uncharacterized protein... 1020 2.4e-168 4
POMBASE|SPBC1826.01c - symbol:mot1 "TATA-binding protein ... 1266 5.9e-167 3
SGD|S000006003 - symbol:MOT1 "Essential protein involved ... 1322 2.6e-156 4
UNIPROTKB|B4E0W6 - symbol:BTAF1 "TATA-binding protein-ass... 1120 2.8e-114 2
WB|WBGene00000274 - symbol:btf-1 species:6239 "Caenorhabd... 574 2.5e-58 4
UNIPROTKB|F1S594 - symbol:LOC100622433 "Uncharacterized p... 463 5.0e-40 1
UNIPROTKB|K7GT64 - symbol:LOC100622433 "Uncharacterized p... 463 7.4e-40 1
UNIPROTKB|O53499 - symbol:helZ "PROBABLE HELICASE HELZ" s... 463 8.0e-40 1
UNIPROTKB|D4AA07 - symbol:Smarca4 "Transcription activato... 463 1.3e-39 1
UNIPROTKB|F1MJ46 - symbol:SMARCA4 "Transcription activato... 463 2.0e-39 1
UNIPROTKB|A7Z019 - symbol:SMARCA4 "Transcription activato... 463 2.0e-39 1
MGI|MGI:88192 - symbol:Smarca4 "SWI/SNF related, matrix a... 463 2.1e-39 1
RGD|621728 - symbol:Smarca4 "SWI/SNF related, matrix asso... 463 2.1e-39 1
UNIPROTKB|E2RJ89 - symbol:SMARCA4 "Uncharacterized protei... 463 2.1e-39 1
UNIPROTKB|G3V790 - symbol:Smarca4 "SWI/SNF related, matri... 463 2.1e-39 1
UNIPROTKB|F1M6Y4 - symbol:Smarca4 "Transcription activato... 463 2.1e-39 1
UNIPROTKB|P51532 - symbol:SMARCA4 "Transcription activato... 463 2.1e-39 1
UNIPROTKB|Q9HBD4 - symbol:SMARCA4 "SMARCA4 isoform 2" spe... 463 2.2e-39 1
UNIPROTKB|D3ZZZ1 - symbol:Ercc6 "Protein Ercc6" species:1... 460 3.4e-39 3
UNIPROTKB|Q8EGF3 - symbol:SO_1651 "Helicase/SNF2 family d... 455 7.1e-39 1
TIGR_CMR|SO_1651 - symbol:SO_1651 "Snf2 family protein" s... 455 7.1e-39 1
FB|FBgn0000212 - symbol:brm "brahma" species:7227 "Drosop... 475 2.2e-38 2
POMBASE|SPCC1620.14c - symbol:snf22 "ATP-dependent DNA he... 451 4.2e-38 1
DICTYBASE|DDB_G0271052 - symbol:snf2b "SNF2-related prote... 466 5.8e-38 2
UNIPROTKB|E2QSK6 - symbol:ERCC6L "Uncharacterized protein... 463 6.8e-38 4
POMBASE|SPAC1250.01 - symbol:snf21 "ATP-dependent DNA hel... 445 1.0e-37 1
ZFIN|ZDB-GENE-030131-5964 - symbol:smarca2 "SWI/SNF relat... 466 1.8e-37 2
UNIPROTKB|D4A4J2 - symbol:Smarca2 "Protein Smarca2" speci... 458 2.1e-37 2
UNIPROTKB|A5PKK5 - symbol:SMARCA2 "SMARCA2 protein" speci... 458 2.3e-37 2
UNIPROTKB|E2RKP4 - symbol:SMARCA2 "Uncharacterized protei... 458 2.3e-37 2
UNIPROTKB|J9P5P2 - symbol:SMARCA2 "Uncharacterized protei... 458 2.4e-37 2
MGI|MGI:99603 - symbol:Smarca2 "SWI/SNF related, matrix a... 458 2.4e-37 2
TIGR_CMR|BA_5487 - symbol:BA_5487 "helicase, putative" sp... 439 2.4e-37 1
UNIPROTKB|P51531 - symbol:SMARCA2 "Probable global transc... 458 2.5e-37 2
UNIPROTKB|E9PTG1 - symbol:Smarca2 "Protein Smarca2" speci... 458 2.5e-37 2
UNIPROTKB|F1SJG5 - symbol:SMARCA2 "Uncharacterized protei... 458 3.4e-37 3
ASPGD|ASPL0000047400 - symbol:AN2285 species:162425 "Emer... 442 3.6e-37 1
UNIPROTKB|E1BYA8 - symbol:ERCC6 "Uncharacterized protein"... 462 7.0e-37 3
SGD|S000000017 - symbol:FUN30 "Snf2p family member with A... 452 8.4e-37 3
ASPGD|ASPL0000042729 - symbol:AN2278 species:162425 "Emer... 444 1.2e-36 2
UNIPROTKB|Q47YP1 - symbol:CPS_3404 "Snf2 family protein" ... 441 1.8e-36 2
TIGR_CMR|CPS_3404 - symbol:CPS_3404 "Snf2 family protein"... 441 1.8e-36 2
SGD|S000003118 - symbol:INO80 "ATPase and nucleosome spac... 453 1.9e-36 3
ZFIN|ZDB-GENE-070228-1 - symbol:ercc6 "excision repair cr... 440 1.9e-36 3
DICTYBASE|DDB_G0285205 - symbol:snf2a "SNF2-related prote... 449 2.3e-36 2
RGD|1302988 - symbol:Smarca2 "SWI/SNF related, matrix ass... 448 3.7e-36 2
UNIPROTKB|Q03468 - symbol:ERCC6 "DNA excision repair prot... 453 4.8e-36 5
UNIPROTKB|E1C2F7 - symbol:E1C2F7 "Uncharacterized protein... 458 7.3e-36 3
SGD|S000001388 - symbol:STH1 "ATPase component of the RSC... 446 9.3e-36 2
UNIPROTKB|F1SDX0 - symbol:ERCC6 "Uncharacterized protein"... 452 1.1e-35 4
CGD|CAL0003962 - symbol:orf19.239 species:5476 "Candida a... 438 3.6e-35 2
CGD|CAL0000831 - symbol:orf19.1734 species:5476 "Candida ... 450 4.9e-35 3
ZFIN|ZDB-GENE-030605-1 - symbol:smarca4 "SWI/SNF related,... 458 5.0e-35 3
POMBASE|SPAC29B12.01 - symbol:ino80 "SNF2 family helicase... 438 1.4e-34 3
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 423 2.4e-34 3
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 423 2.4e-34 3
DICTYBASE|DDB_G0281441 - symbol:ercc6 "DNA excision repai... 446 3.2e-34 3
UNIPROTKB|F1SSV0 - symbol:INO80 "Uncharacterized protein"... 414 3.5e-34 1
POMBASE|SPAC11E3.01c - symbol:swr1 "SNF2 family helicase ... 417 3.0e-33 2
TAIR|locus:2062840 - symbol:SYD "SPLAYED" species:3702 "A... 428 4.5e-33 3
GENEDB_PFALCIPARUM|PFB0730w - symbol:PFB0730w "DNA helica... 426 8.9e-33 3
UNIPROTKB|O96239 - symbol:PFB0730w "DEAD/DEAH box helicas... 426 8.9e-33 3
UNIPROTKB|H0YMN5 - symbol:INO80 "DNA helicase INO80" spec... 412 2.0e-32 2
UNIPROTKB|Q71Z25 - symbol:LMOf2365_1665 "Helicase, Snf2 f... 362 2.3e-32 3
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 414 2.6e-32 3
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 423 2.6e-32 3
UNIPROTKB|F1PKX5 - symbol:INO80 "Uncharacterized protein"... 414 4.0e-32 2
UNIPROTKB|E1BAN8 - symbol:INO80 "Uncharacterized protein"... 414 4.0e-32 2
ASPGD|ASPL0000041040 - symbol:AN9077 species:162425 "Emer... 410 4.1e-32 2
ASPGD|ASPL0000056677 - symbol:AN1024 species:162425 "Emer... 390 4.2e-32 1
ASPGD|ASPL0000037473 - symbol:AN2973 species:162425 "Emer... 391 5.6e-32 1
UNIPROTKB|Q9ULG1 - symbol:INO80 "DNA helicase INO80" spec... 412 6.5e-32 2
WB|WBGene00016868 - symbol:C52B9.8 species:6239 "Caenorha... 406 6.6e-32 2
CGD|CAL0000801 - symbol:orf19.1720 species:5476 "Candida ... 387 8.8e-32 1
UNIPROTKB|Q5AJ72 - symbol:CaO19.1720 "Putative uncharacte... 387 8.8e-32 1
SGD|S000002742 - symbol:SWR1 "Swi2/Snf2-related ATPase st... 404 1.0e-31 2
FB|FBgn0086613 - symbol:Ino80 "Ino80" species:7227 "Droso... 391 1.1e-31 1
ASPGD|ASPL0000068126 - symbol:cshA species:162425 "Emeric... 322 1.2e-31 4
WB|WBGene00007027 - symbol:ssl-1 species:6239 "Caenorhabd... 419 1.7e-31 3
CGD|CAL0005444 - symbol:SNF2 species:5476 "Candida albica... 419 1.7e-31 3
UNIPROTKB|Q5AM49 - symbol:SNF2 "Putative uncharacterized ... 419 1.7e-31 3
UNIPROTKB|F1P0A4 - symbol:SMARCA5 "Uncharacterized protei... 354 1.7e-31 2
RGD|1310969 - symbol:Ino80 "INO80 homolog (S. cerevisiae)... 418 1.8e-31 3
DICTYBASE|DDB_G0267638 - symbol:DDB_G0267638 "CHR group p... 414 2.3e-31 4
ZFIN|ZDB-GENE-041014-72 - symbol:ino80 "INO80 homolog (S.... 411 2.7e-31 3
POMBASE|SPCP25A2.02c - symbol:rhp26 "SNF2 family helicase... 336 3.4e-31 4
UNIPROTKB|F1SC64 - symbol:HELLS "Uncharacterized protein"... 393 3.9e-31 2
RGD|1565734 - symbol:Ercc6l "excision repair cross-comple... 383 4.9e-31 1
WARNING: Descriptions of 425 database sequences were not reported due to the
limiting value of parameter V = 100.
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 1292 (459.9 bits), Expect = 1.5e-239, Sum P(5) = 1.5e-239
Identities = 274/626 (43%), Positives = 389/626 (62%)
Query: 1196 DRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVL---IPDGPSNKKKIIL 1252
D S+ I RRG+E L + F L LP LW+ +T L + + +++
Sbjct: 1024 DESKKPCLIQRRGAEFCLMTVARHFSKELTKTLPYLWESMTGPLRNALDAQEFDSSQLLK 1083
Query: 1253 AIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCIT 1312
+SV Q L+N++Q++ A + + L P L+ LP + C+ H + +VR A+RC+
Sbjct: 1084 QGDSVA--QDLVNSLQVLEVTAGAMSQELIPLLMEQLPLLCTCLQHPYTAVRHMAARCVG 1141
Query: 1313 SMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAEXXXXXXXXXXXX 1372
++K T+ M +E +P LG + ++GA ++ +++ L +
Sbjct: 1142 VLSKIATMETMNVFLEQVLPWLGAIDDNTKQEGAIEALACVMEQLDVDIVPYIVLLVVPV 1201
Query: 1373 XRCMSD-CDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSRN-AEDAQFLEQLLDN 1430
MSD CD SVR T+ FA+L+ LLPL G+ P ++E L R A + FLEQLLD
Sbjct: 1202 LGRMSDPCD-SVRFMATQCFATLIRLLPLEAGIPDPPSMSEDLIRQKARERHFLEQLLDG 1260
Query: 1431 SHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASD-- 1488
+++YK+ +K LR+YQQ+G+NWLAFL ++KLHGILCDDMGLGKTLQ+ I+A D
Sbjct: 1261 RKLENYKIPVPIKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHF 1320
Query: 1489 --IAERRASNSIEEIH-PSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR 1545
E + + + PS+++CP TL GHW E+ KF ++ L Y G +R L+
Sbjct: 1321 LRAQEYTRTKAPDSCPLPSIVVCPPTLTGHWVDEVGKFCSKEFLNPLHYTGPPTERARLQ 1380
Query: 1546 EQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLI 1605
Q KHN+I+ SYDVVR D ++ + +NYCILDEGH+IKN K+K++ A+KQL A +RLI
Sbjct: 1381 HQVKKHNLIVASYDVVRNDVEFFRDIKFNYCILDEGHVIKNGKTKLSKAIKQLTANYRLI 1440
Query: 1606 LSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAME 1665
LSGTPIQNN+ +LWSLFDFLMPGFLGTERQF A YGKP++A+RD+K S+++ EAGVLAME
Sbjct: 1441 LSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAME 1500
Query: 1666 ALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKV 1725
ALH+QV+PFLLRR KD+VL DLP KIIQD YC+LS +Q++LYE F+ S+AK + ++
Sbjct: 1501 ALHRQVLPFLLRRMKDDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVNVDDVIST 1560
Query: 1726 DESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDI 1785
+ + E + KA+ HVFQALQYL KLC+HP LVL + PE H++E
Sbjct: 1561 ASTQEDEEKPKL--KATGHVFQALQYLRKLCNHPALVLTPQHPEYK--HITEQLSTQHSS 1616
Query: 1786 ISEL-H--KASSLSQI--SCSSGDNG 1806
+ ++ H K S+L Q+ C G G
Sbjct: 1617 LRDIQHAPKLSALKQLLLDCGLGSAG 1642
Score = 418 (152.2 bits), Expect = 1.5e-239, Sum P(5) = 1.5e-239
Identities = 122/342 (35%), Positives = 171/342 (50%)
Query: 6 SRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVXXX 65
SRL RL LLDTG+T TR AA+Q+G++ K HP +LN+LL KV YLRS +WDTR+
Sbjct: 4 SRLERLFILLDTGTTPVTRKAAAQQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRIAAG 63
Query: 66 XXXXXXXQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLN 125
+N+ E + K EV ED+ P S +SF FD++
Sbjct: 64 QAVEAIVKNIP-----EWNPSPKPK-DEV----CAEDLS--PEDVS--TDRLSFYRFDIS 109
Query: 126 KVLEFGA-LLASGGQEYDIAIDNS--KNPRERLARQKQNLKRRLGLDVCEQF-VDLNDMI 181
++L+ GA LL S G E+++ D S +P+ERLARQ++ L+++LGLD+ +D ++
Sbjct: 110 RLLKHGASLLGSAGAEFELQDDKSGETDPKERLARQRKQLQKKLGLDMGAAIGMDTEELF 169
Query: 182 KDEDL---IVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRK 238
DEDL N G + S + L+ S +S R + M K
Sbjct: 170 NDEDLEDACASSTNRTQPGKSLGCHFSRNHLPAAELIDSEFRPGMSNRQKNKAKRMAKLV 229
Query: 239 AKISSKD-QSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKA--DAVLDEDSSEHEGDG 295
AK S+D S S D P + T P N +K D V D +SS E
Sbjct: 230 AKQRSRDVDSNEKSNDSFEGEPEEKRRKTTNVVIEQPANDSKVLIDNVPD-NSSLFEETQ 288
Query: 296 LWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAG 337
WP SF ++L D+F+P WE+RHG+ LRE+L HGA G
Sbjct: 289 EWPLESFCDELCNDLFNPSWEIRHGAGTGLREVLKCHGAGGG 330
Score = 312 (114.9 bits), Expect = 1.5e-239, Sum P(5) = 1.5e-239
Identities = 61/105 (58%), Positives = 78/105 (74%)
Query: 499 EFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQ 558
E+L+D IR LC+ +LDRFGD+VSD+VVAPVRETCAQ LG A ++M S V T+ ILL+
Sbjct: 346 EWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMENSGVAMTVDILLK 405
Query: 559 MQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLED 603
+ +WE+RHG LLGIKY +AVRQ+++ LL VLPA GL D
Sbjct: 406 LLTEDQWEVRHGGLLGIKYALAVRQDLIAELLPRVLPAITEGLRD 450
Score = 223 (83.6 bits), Expect = 1.5e-239, Sum P(5) = 1.5e-239
Identities = 84/259 (32%), Positives = 125/259 (48%)
Query: 705 LSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIV 764
L++L PR+WPF+RH+I SVR +A+ TL LL A+ S + W + I+ D LR +
Sbjct: 524 LTVLVPRVWPFLRHTIASVRRAALDTLFTLLSK------ADQSC-AVWLNPIMQDMLRHI 576
Query: 765 FQNLLLESNEEILQCSDRVWR-LLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKM 823
FQ+ +LESN+EIL+ +VWR LL Q+P + + AA +M +W+ L +D +
Sbjct: 577 FQSCILESNQEILELIQKVWRELLRQAPQQYVVAASCPWMGAWLCLMMQAPHIPIDPNML 636
Query: 824 FWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTN 883
L K+ FK A A K S + QE G T + + + + VT
Sbjct: 637 -----LEVKARFKEKA---AGKARQGSVPVKETVQEYIGGAETVTEE---PATRDYVVTR 685
Query: 884 TRVVTASALGIFAS-----KLHEGSIQF-----VIDPLWNALTSFSGVQRQVAAMVFISW 933
R++ A LG S +L+ S++ + L L S S +QR +MV W
Sbjct: 686 ARLMAAKLLGALCSCICDPRLNSSSLELRPAESLAQLLLFHLNSKSALQRIAVSMVICEW 745
Query: 934 FKEIKSEELPGSAAVLPNL 952
K EL S+ V P L
Sbjct: 746 AGLQKECELL-SSVVQPRL 763
Score = 152 (58.6 bits), Expect = 1.5e-239, Sum P(5) = 1.5e-239
Identities = 43/185 (23%), Positives = 79/185 (42%)
Query: 978 LPYAELSRTYGKMRNEASQLLRAMETSSM-FTEMLSANEIDVESLSADNAISFASKLQLL 1036
L Y E++ + +M+NE QL+ + + + E +++ ++ + F+ L
Sbjct: 771 LYYDEIAIPFTRMQNECKQLIALLADAHIDVRERINSTVFTIDQANELVTTIFSESTSTL 830
Query: 1037 GSNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHXXXXXXXXXXXXWMSELPAR 1096
S + L + + ++ + TS + +Q +H + LP +
Sbjct: 831 NLKSRQFQPLDSKRIQAQSTVCE----TSAEWQQLQLRVHTFTACAVVG----LGMLPDK 882
Query: 1097 LNPIILPLMASIKRXXXXXXXXXXXXXXXXXIADCIARKPSPNDKLIKNICSLTSMDPCE 1156
LNP++ PLM + +R + C AR P PN K++KN+CS +DP
Sbjct: 883 LNPVVRPLMEAARREENSLVQGCAASNIAHLLQLCAARSPCPNAKIVKNLCSSVCVDPML 942
Query: 1157 TPQAA 1161
TP AA
Sbjct: 943 TPSAA 947
Score = 60 (26.2 bits), Expect = 1.4e-170, Sum P(4) = 1.4e-170
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 523 DQVVAPV-RETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIR 568
D PV R+ AQ LG K +HP + L +L R P W+ R
Sbjct: 14 DTGTTPVTRKAAAQQLGDVVK-LHPHELNNLLSKVLTYLRSPNWDTR 59
Score = 56 (24.8 bits), Expect = 5.6e-222, Sum P(5) = 5.6e-222
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 871 ITVG-SDLEMSVTNTRVVTASALGIFAS---KLHEGSIQFVIDPLWNAL 915
IT G DL+ V R V A+AL +L + F++D LWNAL
Sbjct: 444 ITEGLRDLDDDV---RAVAAAALIPVVDGLVQLQPAKVPFIVDTLWNAL 489
Score = 53 (23.7 bits), Expect = 2.7e-212, Sum P(5) = 2.7e-212
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 303 VEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGPDGALNVEFKDKD 357
V+ L+ + + WEVRHG ++ ++ L +P + P A+ +D D
Sbjct: 400 VDILLKLLTEDQWEVRHGGLLGIKYALAVRQDLIAELLPRVLP--AITEGLRDLD 452
Score = 52 (23.4 bits), Expect = 3.4e-212, Sum P(5) = 3.4e-212
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 563 PEWEIRHGSLLGIK 576
P WEIRHG+ G++
Sbjct: 306 PSWEIRHGAGTGLR 319
Score = 48 (22.0 bits), Expect = 3.4e-60, Sum P(3) = 3.4e-60
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 702 PYMLSMLAPRLWPFMRHSITSVRHSAIR 729
P ++ L P L ++H T+VRH A R
Sbjct: 1112 PLLMEQL-PLLCTCLQHPYTAVRHMAAR 1138
Score = 39 (18.8 bits), Expect = 3.5e-220, Sum P(5) = 3.5e-220
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 667 EMIPKMVGATSKQEFDLNEVVRAD------DVGEGRDFQANPYMLSMLAPRLWPFMRH-- 718
E++P+++ A ++ DL++ VRA V +G Q P + + LW +
Sbjct: 435 ELLPRVLPAITEGLRDLDDDVRAVAAAALIPVVDGL-VQLQPAKVPFIVDTLWNALLELD 493
Query: 719 SITSVRHSAIRTLERLL 735
+T+ +S + L LL
Sbjct: 494 DLTASTNSIMTLLSSLL 510
Score = 39 (18.8 bits), Expect = 7.5e-193, Sum P(5) = 7.5e-193
Identities = 17/83 (20%), Positives = 32/83 (38%)
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
V R A LG+ + + +D L LT R ++ I + ++ +
Sbjct: 373 VAPVRETCAQTLGVALRHMENSGVAMTVDILLKLLTEDQWEVRH-GGLLGIKYALAVRQD 431
Query: 941 ELPGSAAVLPNLPGHLKQWLLDL 963
+ A +LP + + + L DL
Sbjct: 432 LI---AELLPRVLPAITEGLRDL 451
Score = 38 (18.4 bits), Expect = 1.4e-59, Sum P(4) = 1.4e-59
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 1285 LLTLLPCIFKCVCHSHVSVRLAA-SRCITSMAKSMTINVMAAVVENAIPMLGDM 1337
L L+P ++ + H+ SVR AA T ++K+ + AV N P++ DM
Sbjct: 524 LTVLVPRVWPFLRHTIASVRRAALDTLFTLLSKA---DQSCAVWLN--PIMQDM 572
Score = 38 (18.4 bits), Expect = 3.7e-32, Sum P(3) = 3.7e-32
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
E+R G+ +L + + LHG+L
Sbjct: 1275 ELRKYQQDGVNWLAFLNKYKLHGIL 1299
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 1286 (457.8 bits), Expect = 2.9e-236, Sum P(4) = 2.9e-236
Identities = 266/573 (46%), Positives = 372/573 (64%)
Query: 1247 KKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLA 1306
K++ I+ ++ + Q +I+ IQL+R + P+L+ ++ L+ IF V + V++
Sbjct: 1178 KEQQIILFQN-EELQKVIDEIQLIRVLLPVLNPCYHSMMIELIQVIFHFVKYPKHQVQMM 1236
Query: 1307 ASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAEXXXXXX 1366
AS+CI + +T+ M ++ N +P+LGD S+ R GA +S +++ + +
Sbjct: 1237 ASKCIARYCQILTLPSMRFLIRNLLPLLGDTRSLTNRMGAINTVSQIIRDMDMQILPYIV 1296
Query: 1367 XXXXXXXRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGL-SRNAEDAQFLE 1425
CMSD D R+ T FA LV L+PL +GV P GL + L + E+ +FLE
Sbjct: 1297 FFTIPILGCMSDQDPDQRRVATLCFAKLVKLMPLEKGVPDPEGLDQDLIQQKQEERKFLE 1356
Query: 1426 QLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIV 1485
QLLD S +++Y L + LR+YQQ+G+NWLAFL ++KLHGILCDDMGLGKTLQ I+
Sbjct: 1357 QLLDGSKVENYPLPIRINTELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQTICII 1416
Query: 1486 ASDIAERRASNSIEEIH-----PSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQD 1540
A D RR + + PSL+ICP +LVGHW +EI+KF S M + Y+G+ +
Sbjct: 1417 AGDDYHRRVNYQEKGTPDFAPLPSLVICPPSLVGHWFYEIKKFCSDSTMKPMTYMGNPSE 1476
Query: 1541 RIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKA 1600
R A R +F HNV+I SYD++R D D L ++ +NYCILDEGHIIKN+K+K+T A K+L++
Sbjct: 1477 RQAQRSKFKDHNVLIMSYDIMRNDIDILSEMHFNYCILDEGHIIKNAKTKLTQAAKRLQS 1536
Query: 1601 AHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAG 1660
HRLILSGTPIQNN+ +LWSLFDFLMPGFLGTE+ F Y KP++A++D KCS KD EAG
Sbjct: 1537 NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKLFNELYSKPILASKDPKCSTKDQEAG 1596
Query: 1661 VLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEIS 1720
VLAMEALH+QV+PFLLRR K++VL+DLP KIIQDRYC+LS +Q++LY+ FS +Q K+ I
Sbjct: 1597 VLAMEALHRQVLPFLLRRLKEDVLADLPPKIIQDRYCNLSPLQIRLYDYFSRTQFKETIK 1656
Query: 1721 SMVKVDESADKGEGNNVSAK------ASTHVFQALQYLLKLCSHPLLVLGDKSPE--SLL 1772
+ V+ DE+ D EG K +TH+FQALQYL KLC HP VL + P+ S++
Sbjct: 1657 NEVE-DENEDADEGGESKKKKGGNGGGATHIFQALQYLRKLCGHPSFVLNPEHPQYPSIM 1715
Query: 1773 CHLSELFPGSSDIISELH--KASSLSQISCSSG 1803
+L P +DI+ H K SL ++ G
Sbjct: 1716 KEF-KLQP--NDILDIAHSPKLVSLKELLLECG 1745
Score = 618 (222.6 bits), Expect = 2.9e-236, Sum P(4) = 2.9e-236
Identities = 201/773 (26%), Positives = 340/773 (43%)
Query: 497 NCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYIL 556
N ++L+D ++R LC++SLDRF DY SDQ+VAPVRETC Q LG KYM V + + IL
Sbjct: 386 NAKWLEDFSLRLLCVISLDRFADYTSDQIVAPVRETCTQTLGIVVKYMDNESVLKVIDIL 445
Query: 557 LQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPXXXXXXXXXXXX 616
L +Q WE+RHG +LGIKY+VAVR +++ +L +LP GL D
Sbjct: 446 LHLQNNKLWEVRHGGMLGIKYVVAVRLDLIDIILPRILPTITDGLMDSDDDVRACASETF 505
Query: 617 XXXXXXXXXXDGQTLHSIVMXXXXXXXXXXXXSPSTSSVMNLLAEIYSQEEMIPKMVGAT 676
L I+ S STSSV+NLL+ YS E++P +
Sbjct: 506 HPISRYLVEKHIDKLPEILTILWDILLELDDISVSTSSVLNLLSNFYSYPEVLPPLKSNN 565
Query: 677 SKQEFDLNEVVRADDVGEGRDFQANPYM----LSMLAPRLWPFMRHSITSVRHSAIRTLE 732
+ + N + P+ L+ L PRL+PF RH++ SVR S+I+TLE
Sbjct: 566 NSSNGNGNGNNGNESSSNSSTPPLLPHTQHSKLAHLVPRLYPFFRHNLYSVRLSSIKTLE 625
Query: 733 RLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQ--S 790
RL+ + + W IL D +R +FQN++LE E+I+ S W LV+
Sbjct: 626 RLIVS------TPQDSKTHWLLSILPDLMRYIFQNIILEEREDIVDLSLSTWESLVKIFK 679
Query: 791 PVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAVKLENDS 850
P + A + S W+ L +TP P L KS A+K++ +L
Sbjct: 680 P-NVIRGACRSYFSQWVTLLSTP------------PNTLFDKSLLLDASKIKQEQLLGGG 726
Query: 851 SGSVDLPQE--------RNGDTSTNSVKITVGSDLEMSVTNTRVVTASALGIFASKLHEG 902
G V P + + T+ ++LE ++++ ++A+G+
Sbjct: 727 GGGVVAPTAGRKIKRSLQQQQQQQQQQQQTI-ANLEYLNIRSKIIGSTAVGLIVRMWPIE 785
Query: 903 SIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQWLLD 962
I + D ++ LTS SG+ R +A+++ + P + PN L Q LL+
Sbjct: 786 DINEIQDMFYSMLTSISGLHRHLASLILAEAYSAESQPNQPPMFQLPPNTIQFLNQHLLE 845
Query: 963 LLA-------CSDPTYPTKDSLLPYAE-LSRTYGKMRNEAS--QLLRAMETSSMFT--EM 1010
L + T + L+ L+ + + + S +LL + S+ E
Sbjct: 846 ELENRTTVNYYMEATNIVSNKLVSDVRVLASSLLNVGVDFSGVELLNILSNPSIQLPYEQ 905
Query: 1011 LSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQML-DDIESIKQRMLTTSGYLK 1069
+ +++ + D + + +L S + +++ D +E+ K+ +L T G+++
Sbjct: 906 IMPYAVELVTNVYDFCVGYIRQLPQPQQQQQQQPSNTIELIIDQLEARKKTILVTIGFVE 965
Query: 1070 CVQSNLHXXXXXXXXXXXXWMSELPARLNPIILPLMASIKRXXXXXXXXXXXXXXXXXIA 1129
+Q+ H + +P +++ I+ LM +I++ I
Sbjct: 966 KIQTEYHTQVLSEMSTLLIVSNNIPPKVSAIVRSLMLAIRKDENPLYQLRAARSLSQFIE 1025
Query: 1130 DCIARKPSPNDKLIKNICSLTSMDPCETP--QAAAMGSMEI-IDDQDFLS--FGSSTGKQ 1184
+ R P PN K+I ++ +L D ETP + ++ I I+ + L+ SS +
Sbjct: 1026 MSLTRTPCPNPKIISSMFTLLCDDHTETPLIPPTSTSTVSIKIEKESLLTTQLDSSNDQT 1085
Query: 1185 KSRAHMLA-GGEDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLT 1236
+ +D R+ ++R+GS + LC +F LF+ LP L +T
Sbjct: 1086 ALMVDSITIQNDDEIRL-AILARKGSVMFFNSLCKRFSNRLFESLPTLLSTIT 1137
Score = 276 (102.2 bits), Expect = 2.9e-236, Sum P(4) = 2.9e-236
Identities = 77/240 (32%), Positives = 127/240 (52%)
Query: 117 VSFTSFDLNKVLEFGA-LLASGGQEYDIA-IDNSKNPRERLARQKQNLKRRLGLDVCE-Q 173
+ F +FD+ KVL +GA L+ASGG+E+D +D + +P+E L +QK+ LK++LGLD +
Sbjct: 143 LQFKNFDIVKVLNYGAPLVASGGKEFDEEELDPNMDPKELLLKQKKKLKKQLGLDDLPIK 202
Query: 174 FVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELN 233
++ +++D+D++ LN+ + + ++ SMV SARE N
Sbjct: 203 LESMDSLVEDKDIV---LNNSKSAIKAK---KEKEEKEKKEDISMVLDTTGM--SARERN 254
Query: 234 MLKRKAK--ISSKDQSK---------SWSEDGDMEVPHAQNVTTPKGS---CGDPFNSNK 279
KRKA+ + K+ K S + + + + N TT K P +S K
Sbjct: 255 KAKRKARNLVKEKENEKPTKRFKEVKSSNNNNNNNNNNNNNSTTEKTKQHITEQPQDSGK 314
Query: 280 A--DAVLDEDSSEHEGDGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAG 337
+++LD D + ++ + WPF S L++D+F P WE+RHGS++ LREI HG G
Sbjct: 315 IVMESILDVDKAYNQDE--WPFTSIFNDLVIDLFSPTWEIRHGSLVGLREICKKHGGGGG 372
Score = 185 (70.2 bits), Expect = 2.9e-236, Sum P(4) = 2.9e-236
Identities = 40/72 (55%), Positives = 47/72 (65%)
Query: 6 SRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVXXX 65
SRL+RLLTLL+TGS+ + R AA+QIGEI K +P DL SLL KV YL S SWDTR+
Sbjct: 2 SRLDRLLTLLETGSSPSIRKAAAQQIGEIQKLYPYDLQSLLDKVQVYLSSDSWDTRIAAG 61
Query: 66 XXXXXXXQNVKL 77
NV L
Sbjct: 62 QAIEAIASNVPL 73
Score = 64 (27.6 bits), Expect = 4.4e-153, Sum P(4) = 4.4e-153
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 563 PEWEIRHGSLLGIK 576
P WEIRHGSL+G++
Sbjct: 348 PTWEIRHGSLVGLR 361
Score = 54 (24.1 bits), Expect = 3.3e-179, Sum P(5) = 3.3e-179
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 314 VWEVRHGSVMALREILTHHGASAGVFMPELGP---DGALN 350
+WEVRHG ++ ++ ++ + +P + P DG ++
Sbjct: 453 LWEVRHGGMLGIKYVVAVRLDLIDIILPRILPTITDGLMD 492
Score = 52 (23.4 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 29/111 (26%), Positives = 49/111 (44%)
Query: 1640 YGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEV-LSDLPEKI------I 1692
YG PLVA+ + ++ + + E L KQ ++ K ++ L DLP K+ +
Sbjct: 156 YGAPLVASGGKEFDEEELDPNMDPKELLLKQK-----KKLKKQLGLDDLPIKLESMDSLV 210
Query: 1693 QDRYCDL--SAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
+D+ L S +K ++ + K++IS MV E N KA
Sbjct: 211 EDKDIVLNNSKSAIKAKKEKEEKEKKEDIS-MVLDTTGMSARERNKAKRKA 260
Score = 49 (22.3 bits), Expect = 7.0e-31, Sum P(5) = 7.0e-31
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 1272 SIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKS 1317
S P+L KL L+P ++ H+ SVRL++ + + + S
Sbjct: 585 STPPLLPHTQHSKLAHLVPRLYPFFRHNLYSVRLSSIKTLERLIVS 630
Score = 41 (19.5 bits), Expect = 1.6e-177, Sum P(5) = 1.6e-177
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 1206 RRGSELALRHLCGKFG 1221
R GS + LR +C K G
Sbjct: 353 RHGSLVGLREICKKHG 368
Score = 41 (19.5 bits), Expect = 3.3e-31, Sum P(4) = 3.3e-31
Identities = 18/91 (19%), Positives = 39/91 (42%)
Query: 1656 DAEAGVLAMEALHKQVMPFLLRRTKD---EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSG 1712
D + A E H + +L+ + D E+L+ L + +++ D+S + S
Sbjct: 494 DDDVRACASETFHP-ISRYLVEKHIDKLPEILTILWDILLE--LDDISVSTSSVLNLLSN 550
Query: 1713 SQAKQEISSMVKVDESADKGEGNNVSAKAST 1743
+ E+ +K + ++ G GN + S+
Sbjct: 551 FYSYPEVLPPLKSNNNSSNGNGNGNNGNESS 581
Score = 40 (19.1 bits), Expect = 3.3e-179, Sum P(5) = 3.3e-179
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 766 QNLLLESNEEILQCSDRVWRLLVQSPV 792
Q ++L NEE+ + D + + V PV
Sbjct: 1180 QQIILFQNEELQKVIDEIQLIRVLLPV 1206
Score = 39 (18.8 bits), Expect = 1.9e-150, Sum P(4) = 1.9e-150
Identities = 13/74 (17%), Positives = 36/74 (48%)
Query: 155 LARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNS------HGNGFDRRFYTSASA 208
+A ++ + LG+ V +++D ++K D+++H N+ HG ++ +
Sbjct: 415 VAPVRETCTQTLGIVV--KYMDNESVLKVIDILLHLQNNKLWEVRHGGMLGIKYVVAVRL 472
Query: 209 HNIQRLVSSMVPSV 222
I ++ ++P++
Sbjct: 473 DLIDIILPRILPTI 486
Score = 38 (18.4 bits), Expect = 6.6e-31, Sum P(4) = 6.6e-31
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
E+R G+ +L + + LHG+L
Sbjct: 1376 ELRKYQQDGVNWLAFLNKYKLHGIL 1400
Score = 37 (18.1 bits), Expect = 6.9e-179, Sum P(5) = 6.9e-179
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 1226 DKLPK----LWDCLTEV 1238
DKLP+ LWD L E+
Sbjct: 518 DKLPEILTILWDILLEL 534
>UNIPROTKB|O14981 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0003700 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AJ001017 EMBL:AF038362 EMBL:AF166118 IPI:IPI00024802
RefSeq:NP_003963.1 UniGene:Hs.500526 ProteinModelPortal:O14981
SMR:O14981 IntAct:O14981 MINT:MINT-2795412 STRING:O14981
PhosphoSite:O14981 PaxDb:O14981 PeptideAtlas:O14981 PRIDE:O14981
Ensembl:ENST00000265990 GeneID:9044 KEGG:hsa:9044 UCSC:uc001khr.3
CTD:9044 GeneCards:GC10P093673 HGNC:HGNC:17307 HPA:HPA042274
MIM:605191 neXtProt:NX_O14981 PharmGKB:PA25437 HOGENOM:HOG000210415
HOVERGEN:HBG017883 InParanoid:O14981 KO:K15192 OMA:TKQEGAI
OrthoDB:EOG4W0XC6 PhylomeDB:O14981 GenomeRNAi:9044 NextBio:33875
ArrayExpress:O14981 Bgee:O14981 CleanEx:HS_BTAF1
Genevestigator:O14981 GermOnline:ENSG00000095564 InterPro:IPR022707
Pfam:PF12054 Uniprot:O14981
Length = 1849
Score = 1276 (454.2 bits), Expect = 3.0e-233, Sum P(5) = 3.0e-233
Identities = 273/622 (43%), Positives = 383/622 (61%)
Query: 1196 DRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIE 1255
D ++ + RRG+E AL + FG + KLP LWD + L N ++
Sbjct: 1014 DEAQKPYLVQRRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTIDINNFDGKSLLD 1073
Query: 1256 SVRDP-QILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSM 1314
P Q L+N++Q+ + A +D L P L+ LP ++ C+ + +VR A+RC+ M
Sbjct: 1074 KGDSPAQELVNSLQVFETAAASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVM 1133
Query: 1315 AKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAEXXXXXXXXXXXXXR 1374
+K T+ M +E +P LG + ++GA ++ +++ L
Sbjct: 1134 SKIATMETMNIFLEKVLPWLGAIDDSVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLG 1193
Query: 1375 CMSDCDQSVRQSVTRSFASLVPLLPLARGV-SPPTGLTEGLSRNAEDAQFLEQLLDNSHI 1433
MSD SVR T+ FA+L+ L+PL G+ PP E + A++ FLEQLLD +
Sbjct: 1194 RMSDQTDSVRFMATQCFATLIRLMPLEAGIPDPPNMSAELIQLKAKERHFLEQLLDGKKL 1253
Query: 1434 DDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERR 1493
++YK+ + LR+YQQ+G+NWLAFL ++KLHGILCDDMGLGKTLQ+ I+A D R
Sbjct: 1254 ENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRA 1313
Query: 1494 ---ASNSIEEIHP--SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF 1548
A + + E P SL++CP TL GHW E+ KF ++ L Y G +RI L+ Q
Sbjct: 1314 QEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQV 1373
Query: 1549 DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSG 1608
+HN+I+ SYDVVR D D+ + +NYCILDEGH+IKN K+K++ AVKQL A +R+ILSG
Sbjct: 1374 KRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSG 1433
Query: 1609 TPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH 1668
TPIQNN+ +LWSLFDFLMPGFLGTERQF A YGKP++A+RD++ S+++ EAGVLAM+ALH
Sbjct: 1434 TPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALH 1493
Query: 1669 KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES 1728
+QV+PFLLRR K++VL DLP KIIQD YC LS +Q++LYE F+ S+AK ++ V
Sbjct: 1494 RQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATL 1553
Query: 1729 ADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDI--I 1786
+++ E + KA+ HVFQALQYL KLC+HP LVL + PE +L +S + I
Sbjct: 1554 SEETEKPKL--KATGHVFQALQYLRKLCNHPALVLTPQHPE-FKTTAEKLAVQNSSLHDI 1610
Query: 1787 SELHKASSLSQI--SCSSGDNG 1806
K S+L Q+ C G NG
Sbjct: 1611 QHAPKLSALKQLLLDCGLG-NG 1631
Score = 380 (138.8 bits), Expect = 3.0e-233, Sum P(5) = 3.0e-233
Identities = 116/342 (33%), Positives = 176/342 (51%)
Query: 6 SRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVXXX 65
SRL+RL LLDTG+T TR AA+Q+GE+ K HP +LN+LL KV YLRS +WDTR+
Sbjct: 4 SRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRIAAG 63
Query: 66 XXXXXXXQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLN 125
+NV E T+ S + ED S ++F FD+
Sbjct: 64 QAVEAIVKNVP-----EWNPVPRTRQEPTSESSM-ED--------SPTTERLNFDRFDIC 109
Query: 126 KVLEFGA-LLASGGQEYDIAIDNSK--NPRERLARQKQNLKRRLGLDVCEQF-VDLNDMI 181
++L+ GA LL S G E+++ + S +P+ER+ARQ++ L+++LGL++ E + ++
Sbjct: 110 RLLQHGASLLGSAGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELF 169
Query: 182 KDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNML-KRKAK 240
DEDL ++ F + T +A I + + S K + R + K++++
Sbjct: 170 NDEDLDYTPTSA---SFVNKQPTLQAAELIDSEFRAGM-SNRQKNKAKRMAKLFAKQRSR 225
Query: 241 ISSKDQSKSW-SEDGDMEVPHAQ--NVTTPKGSCGDPFNSNKA--DAVLDEDSSEHEGDG 295
+ + KS S DG+ E + NV + + N +K D + D S E +
Sbjct: 226 DAVETNEKSNDSTDGEPEEKRRKIANVVINQSA-----NDSKVLIDNIPDSSSLIEETNE 280
Query: 296 LWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAG 337
WP SF E+L D+F+P WEVRHG+ LREIL HG S G
Sbjct: 281 -WPLESFCEELCNDLFNPSWEVRHGAGTGLREILKAHGKSGG 321
Score = 317 (116.6 bits), Expect = 3.0e-233, Sum P(5) = 3.0e-233
Identities = 66/174 (37%), Positives = 102/174 (58%)
Query: 495 QKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLY 554
Q++ E+L+D IR LC+ +LDRFGD+VSD+VVAPVRETCAQ LG K+M+ + V++T+
Sbjct: 333 QQHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKHMNETGVHKTVD 392
Query: 555 ILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPXXXXXXXXXX 614
+LL++ + +WE+RHG LLGIKY +AVRQ++++ LL VL GL+D
Sbjct: 393 VLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKVLTRIIEGLQDLDDDVRAVAAA 452
Query: 615 XXXXXXXXXXXXDGQTLHSIVMXXXXXXXXXXXXSPSTSSVMNLLAEIYSQEEM 668
Q + I+ + ST+S+M LL+ + + ++
Sbjct: 453 SLVPVVESLVYLQTQKVPFIINTLWDALLELDDLTASTNSIMTLLSSLLTYPQV 506
Score = 184 (69.8 bits), Expect = 3.0e-233, Sum P(5) = 3.0e-233
Identities = 48/145 (33%), Positives = 78/145 (53%)
Query: 705 LSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIV 764
L++L PR+WPF+ H+I+SVR +A+ TL LL + S W IL D LR +
Sbjct: 515 LTVLVPRVWPFLHHTISSVRRAALETLFTLLST-------QDQNSSSWLIPILPDMLRHI 567
Query: 765 FQNLLLESNEEILQCSDRVW-RLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKM 823
FQ +LES++EIL +VW LL ++ V+ + AA +M +W+ L P +D +
Sbjct: 568 FQFCVLESSQEILDLIHKVWMELLSKASVQYVVAAACPWMGAWLCLMMQPSHLPIDLNML 627
Query: 824 FWPVALPRKSHFKAAAKMRAVKLEN 848
+ + ++ K K+R + +N
Sbjct: 628 ---LEVKARAKEKTGGKVRQGQSQN 649
Score = 182 (69.1 bits), Expect = 3.0e-233, Sum P(5) = 3.0e-233
Identities = 78/340 (22%), Positives = 136/340 (40%)
Query: 823 MFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVT 882
M P LP + K RA + + G V Q +N + + G+D M
Sbjct: 614 MMQPSHLPIDLNMLLEVKARA---KEKTGGKVRQGQSQNKEVLQEYI---AGADTIMEDP 667
Query: 883 NTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEEL 942
TR + A+KL + DP N +T + ++ + + +
Sbjct: 668 ATRDFVVMRARMMAAKLLGALCCCICDPGVNVVTQEIKPAESLGQLLLFHLNSKSALQRI 727
Query: 943 PGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAME 1002
A V+ K+ LA L Y E++ + +M+NE QL+ ++
Sbjct: 728 -SVALVICEWAALQKECKAVTLAVQPRLLDILSEHLYYDEIAVPFTRMQNECKQLISSL- 785
Query: 1003 TSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRM- 1061
+ + E+ N ++ L+ D A + + + + S L+ Q+L ++S +Q++
Sbjct: 786 -ADVHIEV--GNRVNNNVLTIDQASDLVTTVF---NEATSSFDLNPQVLQQLDSKRQQVQ 839
Query: 1062 LT---TSGYLKCVQSNLHXXXXXXXXXXXXWMSELPARLNPIILPLMASIKRXXXXXXXX 1118
+T T+ + +Q +H + +LP +LNPII PLM +IK+
Sbjct: 840 MTVTETNQEWQVLQLRVHTFAACAVVS----LQQLPEKLNPIIKPLMETIKKEENTLVQN 895
Query: 1119 XXXXXXXXXIADCIARKPSPNDKLIKNICSLTSMDPCETP 1158
+ C R P PN K+IKN+CS +DP TP
Sbjct: 896 YAAQCIAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTP 935
Score = 53 (23.7 bits), Expect = 3.6e-57, Sum P(3) = 3.6e-57
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 674 GATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIR 729
G + QE +N + + D + +P ++ L P L+ +++ T+VRH A R
Sbjct: 1075 GDSPAQEL-VNSLQVFETAAASMDSELHPLLVQHL-PHLYMCLQYPSTAVRHMAAR 1128
Score = 52 (23.4 bits), Expect = 2.2e-205, Sum P(5) = 2.2e-205
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 563 PEWEIRHGSLLGIKYLV 579
P WE+RHG+ G++ ++
Sbjct: 297 PSWEVRHGAGTGLREIL 313
Score = 49 (22.3 bits), Expect = 4.6e-205, Sum P(5) = 4.6e-205
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 303 VEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPEL 343
V+ L+ + WEVRHG ++ ++ L +P++
Sbjct: 391 VDVLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKV 431
Score = 46 (21.3 bits), Expect = 1.4e-169, Sum P(3) = 1.4e-169
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 318 RHGSVMALREILTHHGASAGVFMPEL 343
R G+ AL I+ H G V +P L
Sbjct: 1024 RRGAEFALTTIVKHFGGEMAVKLPHL 1049
Score = 46 (21.3 bits), Expect = 5.4e-55, Sum P(4) = 5.4e-55
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 1275 PMLDE-ALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPM 1333
P + + +++ L L+P ++ + H+ SVR AA + ++ + N + + IP+
Sbjct: 504 PQVQQCSIQQSLTVLVPRVWPFLHHTISSVRRAALETLFTLLSTQDQNSSSWL----IPI 559
Query: 1334 LGDM 1337
L DM
Sbjct: 560 LPDM 563
Score = 42 (19.8 bits), Expect = 7.7e-173, Sum P(4) = 7.7e-173
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 886 VVTASALGIFASK--LHEGSIQFVIDPLWNAL 915
V AS + + S L + F+I+ LW+AL
Sbjct: 449 VAAASLVPVVESLVYLQTQKVPFIINTLWDAL 480
Score = 42 (19.8 bits), Expect = 7.7e-173, Sum P(4) = 7.7e-173
Identities = 22/102 (21%), Positives = 39/102 (38%)
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
V R A LG+ ++E + +D L LT R ++ I + ++ +
Sbjct: 364 VAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRH-GGLLGIKYALAVRQD 422
Query: 941 ELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAE 982
+ +LP + + + L DL D SL+P E
Sbjct: 423 VIN---TLLPKVLTRIIEGLQDL--DDDVRAVAAASLVPVVE 459
Score = 38 (18.4 bits), Expect = 4.2e-83, Sum P(5) = 4.2e-83
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 1536 GSAQDRIALREQFDKHNVIITSY 1558
GS ++ + KH IIT Y
Sbjct: 952 GSTSEKDGMHHTVTKHRGIITLY 974
Score = 38 (18.4 bits), Expect = 1.0e-27, Sum P(3) = 1.0e-27
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
E+R G+ +L + + LHG+L
Sbjct: 1265 ELRKYQQDGVNWLAFLNKYKLHGIL 1289
Score = 37 (18.1 bits), Expect = 3.0e-69, Sum P(4) = 3.0e-69
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 1770 SLLCHLSELFPGSSDIISELHKASSLSQI 1798
+L C + + PG + + E+ A SL Q+
Sbjct: 687 ALCCCICD--PGVNVVTQEIKPAESLGQL 713
>RGD|1564130 [details] [associations]
symbol:Btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, (Mot1 homolog, S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1564130 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AC096310
IPI:IPI00370629 PRIDE:F1LW16 Ensembl:ENSRNOT00000024465
Uniprot:F1LW16
Length = 1848
Score = 1279 (455.3 bits), Expect = 1.9e-231, Sum P(5) = 1.9e-231
Identities = 275/622 (44%), Positives = 383/622 (61%)
Query: 1196 DRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIE 1255
D + + RRG+E AL + FG + KLP LWD + L N +E
Sbjct: 1013 DEGQKPYLVQRRGAEFALTTVVKHFGAEMALKLPHLWDAMVGPLKTMIDLNNFDGKSLLE 1072
Query: 1256 SVRDP-QILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSM 1314
P Q L+N++Q+ + A +D L P L+ LP ++ C+ + +VR A+RC+ M
Sbjct: 1073 RGDAPAQELVNSLQVFETAAASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVM 1132
Query: 1315 AKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAEXXXXXXXXXXXXXR 1374
+K T+ M +E +P LG + ++GA ++ +++ L
Sbjct: 1133 SKIATMETMNIFLEKVLPWLGAIDDNVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLG 1192
Query: 1375 CMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSR-NAEDAQFLEQLLDNSHI 1433
MSD SVR T+ FA+L+ L+PL G+ P ++E L + A++ FLEQLLD +
Sbjct: 1193 RMSDQTDSVRFMATQCFATLIRLMPLEAGIPDPPNMSEELIQLKAKERHFLEQLLDGKKL 1252
Query: 1434 DDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERR 1493
++YK+ + LR+YQQ+G+NWLAFL ++KLHGILCDDMGLGKTLQ+ I+A D +R
Sbjct: 1253 ENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCQRA 1312
Query: 1494 ---ASNSIEEIHP--SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF 1548
A + + E P SL++CP TL GHW E+ KF ++ L Y G +RI L+ Q
Sbjct: 1313 QEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQV 1372
Query: 1549 DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSG 1608
+HN+I+ SYDVVR D D+ + +NYCILDEGH+IKN K+K++ AVKQL A +R+ILSG
Sbjct: 1373 KRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSG 1432
Query: 1609 TPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH 1668
TPIQNN+ +LWSLFDFLMPGFLGTERQF A YGKP++A+RD++ S+++ EAGVLAM+ALH
Sbjct: 1433 TPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALH 1492
Query: 1669 KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES 1728
+QV+PFLLRR K++VL DLP KIIQD YC LS +Q++LYE F+ S+AK ++ V +
Sbjct: 1493 RQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVS--SA 1550
Query: 1729 ADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDI--I 1786
A E KA+ HVFQALQYL KLC+HP LVL + PE +L +S + I
Sbjct: 1551 ALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPE-FKNTTEKLAVQNSSLHDI 1609
Query: 1787 SELHKASSLSQI--SCSSGDNG 1806
K S+L Q+ C G NG
Sbjct: 1610 QHAPKLSALKQLLLDCGLG-NG 1630
Score = 369 (135.0 bits), Expect = 1.9e-231, Sum P(5) = 1.9e-231
Identities = 116/339 (34%), Positives = 172/339 (50%)
Query: 7 RLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVXXXX 66
RL+RL LLDTG+T TR AA+Q+GE+ K HP +LN+LL KV YLRS +WDTR+
Sbjct: 5 RLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRIAAGQ 64
Query: 67 XXXXXXQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLNK 126
+NV E TK S +ED S ++F FD+ +
Sbjct: 65 AVEAIVKNVP-----EWNPVPRTKQEPTECS--MED--------SSTTDRLNFDRFDICR 109
Query: 127 VLEFGA-LLASGGQEYDIAIDNSK--NPRERLARQKQNLKRRLGLDVCEQF-VDLNDMIK 182
+L+ GA LL S G E+++ + S +P+ER+ARQ++ L+++LGL++ E + ++
Sbjct: 110 LLQHGASLLGSAGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFN 169
Query: 183 DEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNML-KRKAKI 241
DEDL ++ + T +A I + + S K + R + K++++
Sbjct: 170 DEDLDYTPTSA---ALVNKQSTLQAAELIDSEFRAGM-SNRQKNKAKRMAKLFAKQRSRD 225
Query: 242 SSKDQSKSW-SEDGDMEVPHAQ--NVTTPKGSCGDPFNSNKADAVLDEDSSEHEGDGLWP 298
+ + KS S DG+ E + NV + + D D V E SS E WP
Sbjct: 226 AVETNEKSNDSTDGEPEEKRRKVANVVINQ-TASDA--KVLIDNV-PESSSFIEETNEWP 281
Query: 299 FRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAG 337
SF E+L D+F+P WEVRHG+ LREIL HG S G
Sbjct: 282 LESFCEELCNDLFNPSWEVRHGAGTGLREILKAHGKSGG 320
Score = 322 (118.4 bits), Expect = 1.9e-231, Sum P(5) = 1.9e-231
Identities = 67/174 (38%), Positives = 103/174 (59%)
Query: 495 QKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLY 554
Q++ E+L+D IR LC+ +LDRFGD+VSD+VVAPVRETCAQ LG K+M+ + V++T+
Sbjct: 332 QQHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKHMNETGVHKTVD 391
Query: 555 ILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPXXXXXXXXXX 614
+LL++ + +WE+RHG LLGIKY +AVRQ++++ LL VL GL+D
Sbjct: 392 VLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKVLTRIIEGLQDLDDDVRAVAAA 451
Query: 615 XXXXXXXXXXXXDGQTLHSIVMXXXXXXXXXXXXSPSTSSVMNLLAEIYSQEEM 668
Q + SI+ + ST+S+M LL+ + + ++
Sbjct: 452 SLVPVVESLVYLQTQKVPSIINTLWDSLLELDDLTASTNSIMTLLSSMLTYPQV 505
Score = 186 (70.5 bits), Expect = 1.9e-231, Sum P(5) = 1.9e-231
Identities = 71/258 (27%), Positives = 113/258 (43%)
Query: 705 LSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIV 764
L++L PR+WPF+ H+I+SVR +A+ TL LL + S W IL D LR +
Sbjct: 514 LTVLVPRVWPFLHHTISSVRRAALETLFTLLST-------QDQNSSSWLIPILSDMLRHI 566
Query: 765 FQNLLLESNEEILQCSDRVW-RLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKM 823
FQ +LES++EIL +VW LL ++ V+ + AA +M +W+ L P +D +
Sbjct: 567 FQFCVLESSQEILDLIHKVWMELLSKASVQYVVAAACPWMGAWLCLMMQPSHLPIDLNML 626
Query: 824 FWPVALPR-KSHFKAA-AKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSV 881
A + K+ K +M++ ++ + D E D +T + + +
Sbjct: 627 LEVKARTKEKTGGKVRQGQMQSKEVLQEYIAGADTIME---DPATRDFVVMRARMMAAKL 683
Query: 882 TNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWF---KEIK 938
G+ + + L L S S +QR AA+V W KE K
Sbjct: 684 LGALCCCICDPGVNMVNQEIKPAESLGQLLLFHLNSKSALQRISAALVICEWAALQKECK 743
Query: 939 SEELPGSAAVLPNLPGHL 956
+ L +L L HL
Sbjct: 744 AVTLAVQPRLLDILSEHL 761
Score = 165 (63.1 bits), Expect = 1.9e-231, Sum P(5) = 1.9e-231
Identities = 46/182 (25%), Positives = 82/182 (45%)
Query: 978 LPYAELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKL-QLL 1036
L Y E++ + +M+NE Q + ++ + + E+ N ++ L+ D A + L +
Sbjct: 761 LYYDEIAVPFTRMQNECKQFISSLADAHI--EV--GNRVNNNVLTIDQANDLVTTLFNEV 816
Query: 1037 GSNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHXXXXXXXXXXXXWMSELPAR 1096
S D + + +Q+ ++ + T+ + +Q +H + +LP +
Sbjct: 817 TSTFDLNPQVLQQLDSKRHQVQMTVAETNQEWQVLQLRVHTFAACAVVS----LQQLPEK 872
Query: 1097 LNPIILPLMASIKRXXXXXXXXXXXXXXXXXIADCIARKPSPNDKLIKNICSLTSMDPCE 1156
LNPII PLM +IK+ + C R P PN K+IKN+CS +DP
Sbjct: 873 LNPIIKPLMETIKKEENTLVQNYAAQYIAKLLQQCTTRTPCPNSKVIKNLCSSLCVDPYL 932
Query: 1157 TP 1158
TP
Sbjct: 933 TP 934
Score = 58 (25.5 bits), Expect = 2.2e-166, Sum P(4) = 2.2e-166
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 510 CILSLDRFGDYVSDQVVAPV-RETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIR 568
C LDR + D PV R+ AQ LG K +HP + L +L R W+ R
Sbjct: 2 CYYRLDRLF-ILLDTGTTPVTRKAAAQQLGEVVK-LHPHELNNLLSKVLIYLRSANWDTR 59
Score = 52 (23.4 bits), Expect = 4.7e-203, Sum P(5) = 4.7e-203
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 563 PEWEIRHGSLLGIKYLV 579
P WE+RHG+ G++ ++
Sbjct: 296 PSWEVRHGAGTGLREIL 312
Score = 52 (23.4 bits), Expect = 7.6e-55, Sum P(4) = 7.6e-55
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 674 GATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIR 729
G QE +N + + D + +P ++ L P L+ +++ T+VRH A R
Sbjct: 1074 GDAPAQEL-VNSLQVFETAAASMDSELHPLLVQHL-PHLYMCLQYPSTAVRHMAAR 1127
Score = 49 (22.3 bits), Expect = 9.7e-203, Sum P(5) = 9.7e-203
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 303 VEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPEL 343
V+ L+ + WEVRHG ++ ++ L +P++
Sbjct: 390 VDVLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKV 430
Score = 48 (22.0 bits), Expect = 2.0e-54, Sum P(4) = 2.0e-54
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 1275 PMLDE-ALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPM 1333
P + + +++ L L+P ++ + H+ SVR AA + ++ + N + + IP+
Sbjct: 503 PQVQQCSIQQSLTVLVPRVWPFLHHTISSVRRAALETLFTLLSTQDQNSSSWL----IPI 558
Query: 1334 LGDM 1337
L DM
Sbjct: 559 LSDM 562
Score = 46 (21.3 bits), Expect = 8.6e-169, Sum P(3) = 8.6e-169
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 318 RHGSVMALREILTHHGASAGVFMPEL 343
R G+ AL ++ H GA + +P L
Sbjct: 1023 RRGAEFALTTVVKHFGAEMALKLPHL 1048
Score = 44 (20.5 bits), Expect = 2.8e-172, Sum P(4) = 2.8e-172
Identities = 29/141 (20%), Positives = 57/141 (40%)
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
V R A LG+ ++E + +D L LT R ++ I + ++ +
Sbjct: 363 VAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRH-GGLLGIKYALAVRQD 421
Query: 941 ELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRA 1000
+ +LP + + + L DL D SL+P E S Y + + S ++
Sbjct: 422 VIN---TLLPKVLTRIIEGLQDL--DDDVRAVAAASLVPVVE-SLVYLQTQKVPS-IINT 474
Query: 1001 METSSMFTEMLSANEIDVESL 1021
+ S + + L+A+ + +L
Sbjct: 475 LWDSLLELDDLTASTNSIMTL 495
Score = 43 (20.2 bits), Expect = 7.3e-172, Sum P(4) = 7.3e-172
Identities = 19/65 (29%), Positives = 25/65 (38%)
Query: 344 GPDGALNVEFKD--KDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSP 401
G G + VE + K + +R E L V E LK DA + TM+
Sbjct: 1003 GSSGNILVELDEGQKPYLVQRRGAEFALTTVVKHFGAEMALKLPHLWDAMVGPLKTMIDL 1062
Query: 402 VNCDG 406
N DG
Sbjct: 1063 NNFDG 1067
Score = 38 (18.4 bits), Expect = 6.6e-25, Sum P(5) = 6.6e-25
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
E+R G+ +L + + LHG+L
Sbjct: 1264 ELRKYQQDGVNWLAFLNKYKLHGIL 1288
Score = 37 (18.1 bits), Expect = 9.1e-81, Sum P(5) = 9.1e-81
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 1730 DKGEGNNVSAKASTHVFQALQYLLKLC 1756
D G GN S+++ T A +L C
Sbjct: 1624 DCGLGNGTSSESGTESVVAQHRILIFC 1650
>UNIPROTKB|F1SCA0 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:CT868714
EMBL:CT954286 Ensembl:ENSSSCT00000011455 Uniprot:F1SCA0
Length = 1850
Score = 1268 (451.4 bits), Expect = 2.3e-229, Sum P(5) = 2.3e-229
Identities = 274/623 (43%), Positives = 382/623 (61%)
Query: 1196 DRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIE 1255
D ++ + RRG+E AL + FG + KLP LWD + L N +E
Sbjct: 1014 DEAQKPYLVQRRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTININNFDGKSLLE 1073
Query: 1256 SVRDP-QILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSM 1314
P Q L+N++Q+ + A +D L P L+ LP ++ C+ + +VR A+RC+ M
Sbjct: 1074 KGDGPAQELVNSLQVFETAAVSMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVM 1133
Query: 1315 AKSMTINVMAAVVENAIPMLGDMTSVHARQGA-GMLISLLVQGLGAEXXXXXXXXXXXXX 1373
+K T+ M +E +P LG + ++GA L +++ L
Sbjct: 1134 SKIATMETMNIFLEKVLPWLGAIDDNIKQEGAIEALACSVMEQLDVGIVPYIVLLVVPVL 1193
Query: 1374 RCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSR-NAEDAQFLEQLLDNSH 1432
MSD SVR T+ FA+L+ L+PL G+ P ++E L + A++ FLEQLLD
Sbjct: 1194 GRMSDQTDSVRFMATQCFATLIRLMPLEAGIPDPPNMSEELIQLKAKERHFLEQLLDGKK 1253
Query: 1433 IDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAER 1492
+++Y++ + LR+YQQ+G+NWLAFL ++KLHGILCDDMGLGKTLQ+ I+A D R
Sbjct: 1254 LENYEIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHR 1313
Query: 1493 R---ASNSIEEIHP--SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQ 1547
A + + E P SL++CP TL GHW E+ KF ++ L Y G +R+ L+ Q
Sbjct: 1314 AQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERVRLQHQ 1373
Query: 1548 FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILS 1607
+HN+I+ SYDVVR D D+ + +NYCILDEGH+IKN K+K++ AVKQL A +R+ILS
Sbjct: 1374 VKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILS 1433
Query: 1608 GTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL 1667
GTPIQNN+ +LWSLFDFLMPGFLGTERQF A YGKP++A+RD++ S+++ EAGVLAM+AL
Sbjct: 1434 GTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDAL 1493
Query: 1668 HKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
H+QV+PFLLRR K++VL DLP KIIQD YC LS +Q++LYE F+ S+AK ++ V
Sbjct: 1494 HRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVS--S 1551
Query: 1728 SADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDI-- 1785
+A E KA+ HVFQALQYL KLC+HP LVL + PE +L +S +
Sbjct: 1552 AALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPE-FKSTTEKLAVQNSSLHD 1610
Query: 1786 ISELHKASSLSQI--SCSSGDNG 1806
I K S+L Q+ C G NG
Sbjct: 1611 IQHAPKLSALKQLLLDCGLG-NG 1632
Score = 370 (135.3 bits), Expect = 2.3e-229, Sum P(5) = 2.3e-229
Identities = 118/349 (33%), Positives = 176/349 (50%)
Query: 7 RLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVXXXX 66
RL+RL LLDTG+T TR AA+Q+GE+ K HP +LN+LL KV YLRS +WDTR+
Sbjct: 5 RLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSTNWDTRIAAGQ 64
Query: 67 XXXXXXQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLNK 126
+NV E TK S + ED S ++F FD+ +
Sbjct: 65 AVEAIVKNVP-----EWNPVPRTKQETTSESAM-ED--------SSTTDRLNFDRFDICR 110
Query: 127 VLEFGA-LLASGGQEYDIAIDNSK--NPRERLARQKQNLKRRLGLDVCEQF-VDLNDMIK 182
+L+ GA LL S G E+++ + S +P+ER+ARQ++ L+++LGL++ E + ++
Sbjct: 111 LLQHGASLLGSAGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFN 170
Query: 183 DEDL--------IVHKLNS--HGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSAREL 232
DEDL +V+K + D F T S N Q+ + + + +K+ S
Sbjct: 171 DEDLDYTPTSAALVNKQPTLQAAELIDSEFRTGMS--NRQKNKAKRMAKLFAKQRS---- 224
Query: 233 NMLKRKAKISSKDQSKSWSEDGDMEVPHAQ--NVTTPKGSCGDPFNSNKA--DAVLDEDS 288
R A + + ++S S DG+ E + NV + + N +K D + D
Sbjct: 225 ----RDA-VETNEKSND-STDGEPEEKRRKIANVVINQSA-----NDSKVLIDNIPDSSP 273
Query: 289 SEHEGDGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAG 337
E + WP SF E+L D+F+P WEVRHG+ LREIL HG S G
Sbjct: 274 LIEETNE-WPLESFCEELCNDLFNPSWEVRHGAGTGLREILKAHGKSGG 321
Score = 311 (114.5 bits), Expect = 2.3e-229, Sum P(5) = 2.3e-229
Identities = 65/174 (37%), Positives = 101/174 (58%)
Query: 495 QKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLY 554
Q++ E+L+D IR LC+ +LDRFGD+VSD+VVAPVRETCAQ LG K+M+ + V++T+
Sbjct: 333 QQHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKHMNETGVHKTVD 392
Query: 555 ILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPXXXXXXXXXX 614
+LL++ + +WE+RHG LLGIKY +AVRQ++++ LL VL GL+D
Sbjct: 393 VLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKVLTRIIEGLQDLDDDVRAVAAA 452
Query: 615 XXXXXXXXXXXXDGQTLHSIVMXXXXXXXXXXXXSPSTSSVMNLLAEIYSQEEM 668
+ I+ + ST+S+M LL+ + + ++
Sbjct: 453 SLVPVVESLVYLQTPKVPFIINTLWDALLELDDLTASTNSIMTLLSSLLTYPQV 506
Score = 182 (69.1 bits), Expect = 2.3e-229, Sum P(5) = 2.3e-229
Identities = 56/157 (35%), Positives = 82/157 (52%)
Query: 705 LSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIV 764
L++L PR+WPF+ H+I+SVR +A+ TL LL + S W IL D LR +
Sbjct: 515 LTVLVPRVWPFLHHTISSVRRAALETLFTLLST-------QDQNSSSWLIPILPDMLRHI 567
Query: 765 FQNLLLESNEEILQCSDRVW-RLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKM 823
FQ +LES++EIL +VW LL ++ V+ + AA +M +W+ L P S L
Sbjct: 568 FQFCVLESSQEILDLIHKVWMELLSKASVQYVVAAACPWMGAWLCLMMQP--SHL----- 620
Query: 824 FWPVALPRKSHFKAAAKMRAV-KLENDSSGSVDLPQE 859
P+ L KA AK + K+ S S ++ QE
Sbjct: 621 --PIDLNMLLEVKARAKEKTGGKVRQGQSQSKEVLQE 655
Score = 173 (66.0 bits), Expect = 2.3e-229, Sum P(5) = 2.3e-229
Identities = 74/339 (21%), Positives = 133/339 (39%)
Query: 823 MFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSV--KITVGSDLEMS 880
M P LP + K RA + + G V R G + + V + G+D M
Sbjct: 614 MMQPSHLPIDLNMLLEVKARA---KEKTGGKV-----RQGQSQSKEVLQEYIAGADTIME 665
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
TR + A+KL + DP N +T + ++ + +
Sbjct: 666 DPATRDFVVMRARMMAAKLLGALCCCICDPGVNVVTQEIKPAESLGQLLLFHLNSKSALQ 725
Query: 941 ELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRA 1000
+ A V+ K+ LA L Y E++ + +M+NE QL+ +
Sbjct: 726 RI-SVALVICEWAALQKECRAVTLAVQPRLLDILSEHLYYDEIAVPFTRMQNECKQLISS 784
Query: 1001 METSSMFTEMLSANEIDVESLSADNAISFASKL-QLLGSNSDGSESLSRQMLDDIESIKQ 1059
+ + + E+ N ++ + D A + + + S+ D + + +Q+ + ++
Sbjct: 785 LADAHI--EV--GNRVNSNVFTIDQANDLVTTVFNEVTSSFDLNPPVLQQLDSKRQQVQM 840
Query: 1060 RMLTTSGYLKCVQSNLHXXXXXXXXXXXXWMSELPARLNPIILPLMASIKRXXXXXXXXX 1119
+ T+ + +Q +H + +LP +LNPII PLM +IK+
Sbjct: 841 TVTETNQEWQVLQLRVHTFAACAVVS----LQQLPEKLNPIIKPLMETIKKEENTLVQNY 896
Query: 1120 XXXXXXXXIADCIARKPSPNDKLIKNICSLTSMDPCETP 1158
+ C AR P PN K++KN+CS +DP TP
Sbjct: 897 AAQCIAKLLQQCTARTPCPNSKIVKNLCSSLCVDPYLTP 935
Score = 60 (26.2 bits), Expect = 1.3e-165, Sum P(4) = 1.3e-165
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 510 CILSLDRFGDYVSDQVVAPV-RETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIR 568
C LDR + D PV R+ AQ LG K +HP + L +L R W+ R
Sbjct: 2 CFFRLDRLF-ILLDTGTTPVTRKAAAQQLGEVVK-LHPHELNNLLSKVLIYLRSTNWDTR 59
Score = 52 (23.4 bits), Expect = 4.0e-202, Sum P(5) = 4.0e-202
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 563 PEWEIRHGSLLGIKYLV 579
P WE+RHG+ G++ ++
Sbjct: 297 PSWEVRHGAGTGLREIL 313
Score = 49 (22.3 bits), Expect = 8.3e-202, Sum P(5) = 8.3e-202
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 303 VEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPEL 343
V+ L+ + WEVRHG ++ ++ L +P++
Sbjct: 391 VDVLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKV 431
Score = 49 (22.3 bits), Expect = 4.7e-55, Sum P(3) = 4.7e-55
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 697 DFQANPYMLSMLAPRLWPFMRHSITSVRHSAIR 729
D + +P ++ L P L+ +++ T+VRH A R
Sbjct: 1097 DSELHPLLVQHL-PHLYMCLQYPSTAVRHMAAR 1128
Score = 47 (21.6 bits), Expect = 1.2e-167, Sum P(3) = 1.2e-167
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 318 RHGSVMALREILTHHGASAGVFMPEL-----GP-DGALNVEFKDKDSITMK 362
R G+ AL I+ H G V +P L GP +N+ D S+ K
Sbjct: 1024 RRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTININNFDGKSLLEK 1074
Score = 46 (21.3 bits), Expect = 3.5e-53, Sum P(4) = 3.5e-53
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 1275 PMLDE-ALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPM 1333
P + + +++ L L+P ++ + H+ SVR AA + ++ + N + + IP+
Sbjct: 504 PQVQQCSIQQSLTVLVPRVWPFLHHTISSVRRAALETLFTLLSTQDQNSSSWL----IPI 559
Query: 1334 LGDM 1337
L DM
Sbjct: 560 LPDM 563
Score = 42 (19.8 bits), Expect = 8.8e-171, Sum P(4) = 8.8e-171
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 886 VVTASALGIFASK--LHEGSIQFVIDPLWNAL 915
V AS + + S L + F+I+ LW+AL
Sbjct: 449 VAAASLVPVVESLVYLQTPKVPFIINTLWDAL 480
Score = 42 (19.8 bits), Expect = 8.8e-171, Sum P(4) = 8.8e-171
Identities = 22/102 (21%), Positives = 39/102 (38%)
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
V R A LG+ ++E + +D L LT R ++ I + ++ +
Sbjct: 364 VAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRH-GGLLGIKYALAVRQD 422
Query: 941 ELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAE 982
+ +LP + + + L DL D SL+P E
Sbjct: 423 VIN---TLLPKVLTRIIEGLQDL--DDDVRAVAAASLVPVVE 459
Score = 38 (18.4 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
E+R G+ +L + + LHG+L
Sbjct: 1266 ELRKYQQDGVNWLAFLNKYKLHGIL 1290
Score = 37 (18.1 bits), Expect = 2.5e-67, Sum P(4) = 2.5e-67
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 1770 SLLCHLSELFPGSSDIISELHKASSLSQI 1798
+L C + + PG + + E+ A SL Q+
Sbjct: 687 ALCCCICD--PGVNVVTQEIKPAESLGQL 713
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 1266 (450.7 bits), Expect = 2.0e-222, Sum P(5) = 2.0e-222
Identities = 273/623 (43%), Positives = 382/623 (61%)
Query: 1196 DRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIE 1255
D ++ + RRG+E AL + FG + LP LWD + L + N +E
Sbjct: 1007 DEAQKPYVVQRRGAEFALSTIAKHFGAEMAKGLPHLWDAMVGSLRNNIHINNFDRKSLLE 1066
Query: 1256 SVRDP-QILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSM 1314
P Q L+N++Q+ A +D L P L+ LP + C+ H +VR A+RC+ M
Sbjct: 1067 KGDAPAQELVNSLQVFEITAASMDIQLHPLLIEHLPHLCMCLQHPSTAVRHMAARCVGVM 1126
Query: 1315 AKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAEXXXXXXXXXXXXXR 1374
+K T+ M +E +P LG + ++GA ++ +++ L
Sbjct: 1127 SKIATMETMNIFLEQVLPWLGAIDDNTKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLG 1186
Query: 1375 CMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSR-NAEDAQFLEQLLDNSHI 1433
MSD SVR T+ FA+L+ L+PL G+ P ++E L + A++ FLEQLLD +
Sbjct: 1187 RMSDQTDSVRFMATQCFATLIRLMPLEAGIPDPPNMSEELIQMKAKERHFLEQLLDGKKL 1246
Query: 1434 DDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASD----I 1489
++YK+ +K LR+YQQ+G+NWLAFL ++KLHGILCDDMGLGKTLQ+ I+A D
Sbjct: 1247 ENYKIPVPIKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCLRA 1306
Query: 1490 AERRASNSIEEIH-PSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF 1548
E + ++ + PSL++CP TL GHW E+ KF ++ L Y G +R L+ Q
Sbjct: 1307 QEYARTKLVDSVPLPSLVVCPPTLTGHWVDEVGKFCSKEYLNPLHYTGPPTERARLQYQV 1366
Query: 1549 DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSG 1608
+HN+I+ SYDVVR D D+ + +NYCILDEGH+IKN K+K++ AVKQL A +R+ILSG
Sbjct: 1367 KRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSG 1426
Query: 1609 TPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEA-GVLAMEAL 1667
TPIQNN+ +LWSLFDFLMPGFLGTERQF A YGKP++A+RD++ S+++ EA GVLAMEAL
Sbjct: 1427 TPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAVGVLAMEAL 1486
Query: 1668 HKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
H+QV+PFLLRR K++VL DLP KIIQD YC LS +Q++LYE F+ S+AK +I V
Sbjct: 1487 HRQVLPFLLRRMKEDVLQDLPPKIIQDYYCVLSPLQVQLYEDFAKSRAKCDIDETVSSIS 1546
Query: 1728 SADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDI-- 1785
++ E + KA+ HVFQALQYL KLC+HP LVL + PE +L +S +
Sbjct: 1547 LREETEKPKL--KATGHVFQALQYLRKLCNHPALVLTTQHPEYKRI-TEQLAAHNSSLRD 1603
Query: 1786 ISELHKASSLSQI--SCSSGDNG 1806
I K S+L Q+ C G+ G
Sbjct: 1604 IQHAPKLSALKQLLLDCGLGNGG 1626
Score = 329 (120.9 bits), Expect = 2.0e-222, Sum P(5) = 2.0e-222
Identities = 69/174 (39%), Positives = 103/174 (59%)
Query: 495 QKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLY 554
Q++ E+L+D IR LC+ +LDRFGD+VSD+VVAPVRETCAQ LG K+M+ + V++T+
Sbjct: 326 QQHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKHMNETGVHKTVD 385
Query: 555 ILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPXXXXXXXXXX 614
+LL++ + +WE+RHG LLGIKY +AVRQ+M+ LL VLPA GL+D
Sbjct: 386 VLLKLLTQEQWEVRHGGLLGIKYALAVRQDMIDTLLPKVLPAIVEGLQDLDDDVRAVAAA 445
Query: 615 XXXXXXXXXXXXDGQTLHSIVMXXXXXXXXXXXXSPSTSSVMNLLAEIYSQEEM 668
Q + I+ + ST+S+M LL+ + + ++
Sbjct: 446 SLVPVVESLVHLQSQKVPFILNTLWDALLELDDLTASTNSIMILLSSLLTYPQV 499
Score = 285 (105.4 bits), Expect = 2.0e-222, Sum P(5) = 2.0e-222
Identities = 74/187 (39%), Positives = 106/187 (56%)
Query: 4 QSSRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVX 63
QS RL+RL LLDTG+T TR AA+Q+GE+ K HP +LN+LL KV YLRS +WDTR+
Sbjct: 2 QSFRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLVYLRSTNWDTRIA 61
Query: 64 XXXXXXXXXQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFD 123
+NV E +K E G +ED S + F FD
Sbjct: 62 AGQAVEAIVKNVP-----EWNPTPRSKQ-EPGSESPMED--------SPSTDRLRFDRFD 107
Query: 124 LNKVLEFGA-LLASGGQEYDIAIDNSK--NPRERLARQKQNLKRRLGLDVCEQF-VDLND 179
+ ++L+ GA LL S G E+++ D S +P+ER+ARQ++ L+++LGLD+ ++ D
Sbjct: 108 ICRLLKHGASLLGSAGAEFEVQDDKSGEIDPKERIARQRKLLQKKLGLDMGAAIGMNTED 167
Query: 180 MIKDEDL 186
+ DEDL
Sbjct: 168 LFNDEDL 174
Score = 248 (92.4 bits), Expect = 1.6e-218, Sum P(5) = 1.6e-218
Identities = 74/227 (32%), Positives = 113/227 (49%)
Query: 119 FTSFDLNKVLEFGA-LLASGGQEYDIAIDNSK--NPRERLARQKQNLKRRLGLDVCEQF- 174
F FD+ ++L+ GA LL S G E+++ D S +P+ER+ARQ++ L+++LGLD+
Sbjct: 103 FDRFDICRLLKHGASLLGSAGAEFEVQDDKSGEIDPKERIARQRKLLQKKLGLDMGAAIG 162
Query: 175 VDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRL-VSSMVPSVISKRPSARELN 233
++ D+ DEDL +S S N L + ++ S S+R+ N
Sbjct: 163 MNTEDLFNDEDLDYSP-------------SSVSLVNKPTLQAAELIDSEFRAGMSSRQKN 209
Query: 234 MLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGS--CGDPFNSNKADA-VLDEDSSE 290
KR AK+ +K +S+ E + K N D+ L E++SE
Sbjct: 210 KAKRMAKLFAKQRSRDAVEANEKSNDSTDGEPEEKRRKVANVVINQPATDSKTLVENASE 269
Query: 291 HEGDGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAG 337
+ WP SF E++ D+F+P WEVRHG+ LREIL HG S G
Sbjct: 270 EANE--WPLESFCEEVCNDLFNPSWEVRHGAGTGLREILKAHGKSGG 314
Score = 208 (78.3 bits), Expect = 2.0e-222, Sum P(5) = 2.0e-222
Identities = 53/145 (36%), Positives = 82/145 (56%)
Query: 705 LSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIV 764
L++L PR+WPF+ H+I+SVR +A+ TL LL + S W + IL D LR +
Sbjct: 508 LTVLVPRVWPFLHHTISSVRKAALETLFTLLST-------QDQSSSTWLTPILQDMLRHI 560
Query: 765 FQNLLLESNEEILQCSDRVW-RLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKM 823
FQ +LESN+EIL +VW LL ++ V+ + AA +M +W+ L P +D +
Sbjct: 561 FQFCILESNQEILDLIHKVWLELLNKASVQYVVAAACPWMGAWLCLMMQPSHLPIDLNML 620
Query: 824 FWPVALPRKSHFKAAAKMRAVKLEN 848
+ + +S KAAAK+R + +N
Sbjct: 621 ---LEVKTRSKEKAAAKLRQGQTQN 642
Score = 172 (65.6 bits), Expect = 2.0e-222, Sum P(5) = 2.0e-222
Identities = 74/341 (21%), Positives = 130/341 (38%)
Query: 825 WPVALPRKSHFKAAAKMRA-VKLENDSSGSVDLPQERNGDTSTNSV--KITVGSDLEMSV 881
W + + SH M VK + + L R G T V + G+D
Sbjct: 603 WLCLMMQPSHLPIDLNMLLEVKTRSKEKAAAKL---RQGQTQNKEVIQEYIAGADSIAED 659
Query: 882 TNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEE 941
TR + A+KL + DP N +T +A ++ + +
Sbjct: 660 PATRDYVVMRARMMAAKLLGALCCCICDPGVNTVTQEIKPAESLAQLLLFHLNSKSALQR 719
Query: 942 LPGSAAVLPNLPGHLKQWLLDLLACSDPTY-PTKDSLLPYAELSRTYGKMRNEASQLLRA 1000
+ S A++ L++ + C P L Y E++ + +M+NE QL+
Sbjct: 720 I--SVALVICEWAALQKECRTVAICVQPCLLGVLSEHLYYDEIAVPFTRMQNECKQLISL 777
Query: 1001 METSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQR 1060
+ + + N I+ + D A + + + S +L+ ++L ++S +Q+
Sbjct: 778 LADAHIDI----GNRINCSVFTIDQANDLVTSVF---NEVTSSFTLNPKILQQLDSKRQQ 830
Query: 1061 MLTTSGYLKCVQSNLHXXXXXXXXXXXXWMSELPARLNPIILPLMASIKRXXXXXXXXXX 1120
+ T LH + +LP +LNP+I PLM +I++
Sbjct: 831 VQMTVTETNQEWQVLHLRVHTFAACAVVNLQQLPEKLNPVIKPLMEAIRKEENTLVQNYV 890
Query: 1121 XXXXXXXIADCIARKPSPNDKLIKNICSLTSMDPCETPQAA 1161
+ C R P PN K+IKN+C+ +DP TP AA
Sbjct: 891 ASCIAKLLQQCTTRSPCPNSKIIKNLCNSLCVDPHLTPLAA 931
Score = 61 (26.5 bits), Expect = 3.3e-49, Sum P(3) = 3.3e-49
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 657 NLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFM 716
N+ + ++ ++ K G QE +N + + D Q +P ++ L P L +
Sbjct: 1053 NIHINNFDRKSLLEK--GDAPAQEL-VNSLQVFEITAASMDIQLHPLLIEHL-PHLCMCL 1108
Query: 717 RHSITSVRHSAIR 729
+H T+VRH A R
Sbjct: 1109 QHPSTAVRHMAAR 1121
Score = 52 (23.4 bits), Expect = 2.7e-193, Sum P(5) = 2.7e-193
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 563 PEWEIRHGSLLGIKYLV 579
P WE+RHG+ G++ ++
Sbjct: 290 PSWEVRHGAGTGLREIL 306
Score = 52 (23.4 bits), Expect = 2.7e-193, Sum P(5) = 2.7e-193
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 303 VEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGP 345
V+ L+ + WEVRHG ++ ++ L +P++ P
Sbjct: 384 VDVLLKLLTQEQWEVRHGGLLGIKYALAVRQDMIDTLLPKVLP 426
Score = 49 (22.3 bits), Expect = 1.6e-160, Sum P(4) = 1.6e-160
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 886 VVTASALGIFASKLHEGS--IQFVIDPLWNALTSFSGVQRQV-AAMVFIS 932
V AS + + S +H S + F+++ LW+AL + + M+ +S
Sbjct: 442 VAAASLVPVVESLVHLQSQKVPFILNTLWDALLELDDLTASTNSIMILLS 491
Score = 42 (19.8 bits), Expect = 8.9e-160, Sum P(4) = 8.9e-160
Identities = 22/102 (21%), Positives = 39/102 (38%)
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
V R A LG+ ++E + +D L LT R ++ I + ++ +
Sbjct: 357 VAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRH-GGLLGIKYALAVRQD 415
Query: 941 ELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAE 982
+ +LP + + + L DL D SL+P E
Sbjct: 416 MID---TLLPKVLPAIVEGLQDL--DDDVRAVAAASLVPVVE 452
Score = 42 (19.8 bits), Expect = 1.4e-156, Sum P(3) = 1.4e-156
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 318 RHGSVMALREILTHHGASAGVFMPEL 343
R G+ AL I H GA +P L
Sbjct: 1017 RRGAEFALSTIAKHFGAEMAKGLPHL 1042
Score = 42 (19.8 bits), Expect = 5.7e-17, Sum P(3) = 5.7e-17
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 185 DLIVHKL--NSHGNGFDRRFYTSASAHNIQRLVSSM 218
D +V L N H N FDR+ Q LV+S+
Sbjct: 1044 DAMVGSLRNNIHINNFDRKSLLEKGDAPAQELVNSL 1079
Score = 40 (19.1 bits), Expect = 3.1e-63, Sum P(4) = 3.1e-63
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 1770 SLLCHLSELFPGSSDIISELHKASSLSQI 1798
+L C + + PG + + E+ A SL+Q+
Sbjct: 680 ALCCCICD--PGVNTVTQEIKPAESLAQL 706
Score = 38 (18.4 bits), Expect = 5.4e-18, Sum P(3) = 5.4e-18
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
E+R G+ +L + + LHG+L
Sbjct: 1258 ELRKYQQDGVNWLAFLNKYKLHGIL 1282
Score = 38 (18.4 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 1228 LPKLWDCLTEVLIPDGPSNKKKIILAIESVRD-PQILINNIQLVRSIAPMLDEALKPKLL 1286
L LWD L E + D ++ I++ + S+ PQ+ +IQ L
Sbjct: 466 LNTLWDALLE--LDDLTASTNSIMILLSSLLTYPQVRKCSIQ--------------QSLT 509
Query: 1287 TLLPCIFKCVCHSHVSVRLAA 1307
L+P ++ + H+ SVR AA
Sbjct: 510 VLVPRVWPFLHHTISSVRKAA 530
>UNIPROTKB|E2QWL4 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AAEX03015408
Ensembl:ENSCAFT00000011817 NextBio:20860516 Uniprot:E2QWL4
Length = 1879
Score = 1283 (456.7 bits), Expect = 2.2e-216, Sum P(4) = 2.2e-216
Identities = 275/622 (44%), Positives = 383/622 (61%)
Query: 1196 DRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIE 1255
D ++ + RRG+E AL + FG + KLP LWD + L N +E
Sbjct: 1014 DEAQKPYLVQRRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLKNTIDINNFDGKSLLE 1073
Query: 1256 SVRDP-QILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSM 1314
P Q L+N++Q+ + A +D L P L+ LP ++ C+ + +VR A+RC+ M
Sbjct: 1074 KGDGPAQELVNSLQVFETAAASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGIM 1133
Query: 1315 AKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAEXXXXXXXXXXXXXR 1374
+K T+ M +E +P LG + ++GA ++ +++ L
Sbjct: 1134 SKIATMETMNIFLEKVLPWLGAIDDNIKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLG 1193
Query: 1375 CMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSR-NAEDAQFLEQLLDNSHI 1433
MSD SVR T+ FA+L+ L+PL G+ P ++E L + A++ FLEQLLD +
Sbjct: 1194 RMSDQTDSVRFMATQCFATLIRLMPLEAGIPDPPNMSEELIQLKAKERHFLEQLLDGKKL 1253
Query: 1434 DDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERR 1493
++YK+ + LR+YQQ+G+NWLAFL ++KLHGILCDDMGLGKTLQ+ I+A D R
Sbjct: 1254 ENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRA 1313
Query: 1494 ---ASNSIEEIHP--SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF 1548
A + + E P SL++CP TL GHW E+ KF ++ L Y G +RI L+ Q
Sbjct: 1314 QEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSKEYLNPLHYTGPPTERIRLQHQV 1373
Query: 1549 DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSG 1608
+HN+I+ SYDVVR D D+ + +NYCILDEGH+IKN K+K++ AVKQL A +R+ILSG
Sbjct: 1374 KRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSG 1433
Query: 1609 TPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH 1668
TPIQNN+ +LWSLFDFLMPGFLGTERQF A YGKP++A+RD++ S+++ EAGVLAM+ALH
Sbjct: 1434 TPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALH 1493
Query: 1669 KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES 1728
+QV+PFLLRR K++VL DLP KIIQD YC LS +Q++LYE F+ S+AK ++ V +
Sbjct: 1494 RQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVS--SA 1551
Query: 1729 ADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDI--I 1786
A E KA+ HVFQALQYL KLC+HP LVL + PE +L +S + I
Sbjct: 1552 ALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPE-FKSTTEKLAVQNSSLHDI 1610
Query: 1787 SELHKASSLSQI--SCSSGDNG 1806
K S+L Q+ C G NG
Sbjct: 1611 QHAPKLSALKQLLLDCGLG-NG 1631
Score = 383 (139.9 bits), Expect = 2.2e-216, Sum P(4) = 2.2e-216
Identities = 119/342 (34%), Positives = 176/342 (51%)
Query: 6 SRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVXXX 65
SRL+RL LLDTG+T TR AA+Q+GE+ K HP +LN+LL KV YLRS +WDTR+
Sbjct: 4 SRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSTNWDTRIAAG 63
Query: 66 XXXXXXXQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLN 125
+NV E TK S + ED S ++F FD+
Sbjct: 64 QAVEAIVKNVP-----EWNPVPRTKQESTSESAM-ED--------SPSTDRLNFDRFDIC 109
Query: 126 KVLEFGA-LLASGGQEYDIAIDNSK--NPRERLARQKQNLKRRLGLDVCEQF-VDLNDMI 181
++L+ GA LL S G E+++ + S +P+ER+ARQ++ L+++LGL++ E + ++
Sbjct: 110 RLLQHGASLLGSAGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELF 169
Query: 182 KDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNML-KRKAK 240
DEDL ++ F + T +A I + + S K + R + K++++
Sbjct: 170 NDEDLDYTPTSA---AFLNKQPTLQAAELIDSEFRAGM-SNRQKNKAKRMAKLFAKQRSR 225
Query: 241 ISSKDQSKSW-SEDGDMEVPHAQ--NVTTPKGSCGDPFNSNKA--DAVLDEDSSEHEGDG 295
+ + KS S DG+ E + NV + + N +K D V E SS E
Sbjct: 226 DAVETNEKSNDSTDGEPEEKRRKIANVVINQSA-----NDSKVLIDNV-PESSSLIEETN 279
Query: 296 LWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAG 337
WP SF E+L D+F+P WEVRHG+ LREIL HG S G
Sbjct: 280 EWPLESFCEELCNDLFNPSWEVRHGAGTGLREILKAHGKSGG 321
Score = 317 (116.6 bits), Expect = 2.2e-216, Sum P(4) = 2.2e-216
Identities = 66/174 (37%), Positives = 102/174 (58%)
Query: 495 QKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLY 554
Q++ E+L+D IR LC+ +LDRFGD+VSD+VVAPVRETCAQ LG K+M+ + V++T+
Sbjct: 333 QQHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKHMNETGVHKTVD 392
Query: 555 ILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPXXXXXXXXXX 614
+LL++ + +WE+RHG LLGIKY +AVRQ++++ LL VL GL+D
Sbjct: 393 VLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKVLTRIIEGLQDLDDDVRAVAAA 452
Query: 615 XXXXXXXXXXXXDGQTLHSIVMXXXXXXXXXXXXSPSTSSVMNLLAEIYSQEEM 668
Q + I+ + ST+S+M LL+ + + ++
Sbjct: 453 SLVPVVESLVYLQTQKVPFIINTLWDALLELDDLTASTNSIMTLLSSLLTYPQV 506
Score = 183 (69.5 bits), Expect = 2.2e-216, Sum P(4) = 2.2e-216
Identities = 77/264 (29%), Positives = 115/264 (43%)
Query: 705 LSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIV 764
L++L PR+WPF+ H+I+SVR +A+ TL LL + S W IL D LR +
Sbjct: 515 LTVLVPRVWPFLHHTISSVRRAALETLFTLLST-------QDQNSSSWLIPILPDMLRHI 567
Query: 765 FQNLLLESNEEILQCSDRVW-RLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKM 823
FQ +LES++EIL +VW LL ++ V+ + AA +M +W+ L P S L
Sbjct: 568 FQFCVLESSQEILDLIHKVWMELLSKASVQYVVAAACPWMGAWLCLMMQP--SHL----- 620
Query: 824 FWPVALPRKSHFKAAAKMRAV-KLENDSSGSVDLPQE--RNGDT-----STNSVKITVGS 875
P+ L KA AK + K+ S + ++ QE DT ST +
Sbjct: 621 --PIDLNMLLEVKARAKEKTGGKIRQGQSQTKEVLQEYIAGADTIMEDPSTRDFVVMRAR 678
Query: 876 DLEMSVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWF- 934
+ + G+ + + + L L S S +QR A+V W
Sbjct: 679 MMAAKLLGALCCCICDPGVNVATQEIKPAESLGQLLLFHLNSKSALQRISVALVICEWAA 738
Query: 935 --KEIKSEELPGSAAVLPNLPGHL 956
KE K+ L +L L HL
Sbjct: 739 LQKECKAVTLAVQPRLLDILSEHL 762
Score = 177 (67.4 bits), Expect = 9.6e-216, Sum P(4) = 9.6e-216
Identities = 79/342 (23%), Positives = 135/342 (39%)
Query: 823 MFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSV--KITVGSDLEMS 880
M P LP + K RA + + G + R G + T V + G+D M
Sbjct: 614 MMQPSHLPIDLNMLLEVKARA---KEKTGGKI-----RQGQSQTKEVLQEYIAGADTIME 665
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
+TR + A+KL + DP N T + ++ + +
Sbjct: 666 DPSTRDFVVMRARMMAAKLLGALCCCICDPGVNVATQEIKPAESLGQLLLFHLNSKSALQ 725
Query: 941 ELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRA 1000
+ A V+ K+ LA L Y E++ + +M+NE QL+ +
Sbjct: 726 RI-SVALVICEWAALQKECKAVTLAVQPRLLDILSEHLYYDEIAVPFTRMQNECKQLISS 784
Query: 1001 METSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQR 1060
+ + + E+ N ++ + D A + + + S L+ Q+L ++S +Q+
Sbjct: 785 LADAHI--EV--GNRVNNNVFTIDQANDLVTTVF---NEVTSSFDLNPQVLQQLDSKRQQ 837
Query: 1061 M-LT---TSGYLKCVQSNLHXXXXXXXXXXXXWMSELPARLNPIILPLMASIKRXXXXXX 1116
+ +T T+ + +Q +H + +LP +LNPII PLM +IKR
Sbjct: 838 VHMTVTETNQEWQVLQLRVHTFAACAVVS----LQQLPEKLNPIIKPLMETIKREENTLV 893
Query: 1117 XXXXXXXXXXXIADCIARKPSPNDKLIKNICSLTSMDPCETP 1158
+ C R P PN K+IKN+CS +DP TP
Sbjct: 894 QNYAAQCIAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTP 935
Score = 52 (23.4 bits), Expect = 1.8e-188, Sum P(4) = 1.8e-188
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 563 PEWEIRHGSLLGIKYLV 579
P WE+RHG+ G++ ++
Sbjct: 297 PSWEVRHGAGTGLREIL 313
Score = 50 (22.7 bits), Expect = 3.7e-57, Sum P(3) = 3.7e-57
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 679 QEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIR 729
QE +N + + D + +P ++ L P L+ +++ T+VRH A R
Sbjct: 1080 QEL-VNSLQVFETAAASMDSELHPLLVQHL-PHLYMCLQYPSTAVRHMAAR 1128
Score = 49 (22.3 bits), Expect = 3.8e-188, Sum P(4) = 3.8e-188
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 303 VEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPEL 343
V+ L+ + WEVRHG ++ ++ L +P++
Sbjct: 391 VDVLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKV 431
Score = 46 (21.3 bits), Expect = 2.0e-170, Sum P(3) = 2.0e-170
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 318 RHGSVMALREILTHHGASAGVFMPEL 343
R G+ AL I+ H G V +P L
Sbjct: 1024 RRGAEFALTTIVKHFGGEMAVKLPHL 1049
Score = 46 (21.3 bits), Expect = 9.8e-57, Sum P(3) = 9.8e-57
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 1275 PMLDE-ALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPM 1333
P + + +++ L L+P ++ + H+ SVR AA + ++ + N + + IP+
Sbjct: 504 PQVQQCSIQQSLTVLVPRVWPFLHHTISSVRRAALETLFTLLSTQDQNSSSWL----IPI 559
Query: 1334 LGDM 1337
L DM
Sbjct: 560 LPDM 563
Score = 42 (19.8 bits), Expect = 1.3e-173, Sum P(4) = 1.3e-173
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 886 VVTASALGIFASK--LHEGSIQFVIDPLWNAL 915
V AS + + S L + F+I+ LW+AL
Sbjct: 449 VAAASLVPVVESLVYLQTQKVPFIINTLWDAL 480
Score = 42 (19.8 bits), Expect = 1.3e-173, Sum P(4) = 1.3e-173
Identities = 22/102 (21%), Positives = 39/102 (38%)
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
V R A LG+ ++E + +D L LT R ++ I + ++ +
Sbjct: 364 VAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRH-GGLLGIKYALAVRQD 422
Query: 941 ELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAE 982
+ +LP + + + L DL D SL+P E
Sbjct: 423 VIN---TLLPKVLTRIIEGLQDL--DDDVRAVAAASLVPVVE 459
Score = 38 (18.4 bits), Expect = 5.3e-28, Sum P(3) = 5.3e-28
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
E+R G+ +L + + LHG+L
Sbjct: 1265 ELRKYQQDGVNWLAFLNKYKLHGIL 1289
>UNIPROTKB|F1N507 [details] [associations]
symbol:Bt.112326 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:DAAA02058811
EMBL:DAAA02058810 IPI:IPI00685441 Ensembl:ENSBTAT00000021438
Uniprot:F1N507
Length = 1845
Score = 1270 (452.1 bits), Expect = 2.5e-213, Sum P(4) = 2.5e-213
Identities = 276/626 (44%), Positives = 387/626 (61%)
Query: 1196 DRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVL--IPDGPSNKKKIILA 1253
D ++ + RRG+E AL + FG + KLP LWD + L D + K +L
Sbjct: 1009 DEAQKPYLVQRRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTIDIHNFDGKSLL- 1067
Query: 1254 IESVRDP-QILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCIT 1312
E P Q L+N++Q+ + A +D L P L+ LP ++ C+ + +VR A+RC+
Sbjct: 1068 -EKGDGPAQELVNSLQVFETAAVSMDSELHPLLVLHLPHLYMCLQYPSTAVRHMAARCVG 1126
Query: 1313 SMAKSMTINVMAAVVENAIPMLGDMTSVHARQGA-GMLISLLVQGLGAEXXXXXXXXXXX 1371
M+K T+ M +E +P LG + ++GA L +++ L
Sbjct: 1127 VMSKIATMETMNIFLEKVLPWLGAIDDNIKQEGAIEALACSVMEQLDVGIVPYIVLLVVP 1186
Query: 1372 XXRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSR-NAEDAQFLEQLLDN 1430
MSD SVR T+ FA+L+ L+PL G+ P ++E L + A++ FLEQLLD
Sbjct: 1187 VLGRMSDQTDSVRFMATQCFATLIRLMPLEAGIPDPPNMSEELIQLKAKERHFLEQLLDG 1246
Query: 1431 SHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIA 1490
+++YK+ + LR+YQQ+G+NWLAFL ++KLHGILCDDMGLGKTLQ+ I+A D
Sbjct: 1247 KKLENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHC 1306
Query: 1491 ERR---ASNSIEEIHP--SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR 1545
R A + + E P SL++CP TL GHW E+ KF ++ L Y G +RI L+
Sbjct: 1307 HRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQ 1366
Query: 1546 EQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLI 1605
Q +HN+++ SYDVVR D D+ + +NYCILDEGH+IKN K+K++ AVKQL A +R+I
Sbjct: 1367 HQVKRHNLVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRII 1426
Query: 1606 LSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAME 1665
LSGTPIQNN+ +LWSLFDFLMPGFLGTERQF A YGKP++A+RD++ S+++ EAGVLAM+
Sbjct: 1427 LSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMD 1486
Query: 1666 ALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKV 1725
ALH+QV+PFLLRR K++VL DLP KIIQD YC LS +Q++LYE F+ S+AK ++ V
Sbjct: 1487 ALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVS- 1545
Query: 1726 DESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDI 1785
+A E KA+ HVFQALQYL KLC+HP LVL + PE + +E +
Sbjct: 1546 -SAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPE--FKNTTEKLAAQNSS 1602
Query: 1786 ISEL-H--KASSLSQI--SCSSGDNG 1806
+ ++ H K S+L Q+ C G NG
Sbjct: 1603 LHDIQHAPKLSALKQLLLDCGLG-NG 1627
Score = 368 (134.6 bits), Expect = 2.5e-213, Sum P(4) = 2.5e-213
Identities = 118/349 (33%), Positives = 177/349 (50%)
Query: 7 RLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVXXXX 66
RL+RL LLDTG+T TR AA+Q+GE+ K HP +LN+LL KV YLRS +WDTR+
Sbjct: 5 RLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSTNWDTRIAAGQ 64
Query: 67 XXXXXXQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLNK 126
+NV E TK S + ED S ++F FD+ +
Sbjct: 65 AVEAIVKNVP-----EWNPVPRTKQETTSESAM-ED--------SSTTDRLNFDRFDICR 110
Query: 127 VLEFGA-LLASGGQEYDIAIDNSK--NPRERLARQKQNLKRRLGLDVCEQF-VDLNDMIK 182
+L+ GA LL S G E+++ + S +P+ER+ARQ++ L+++LGL++ E + ++
Sbjct: 111 LLQHGASLLGSAGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFN 170
Query: 183 DEDL--------IVHKLNS--HGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSAREL 232
DEDL +V+K + D F T S N Q+ + + + +K+ S
Sbjct: 171 DEDLDYTPTSAALVNKQPTLQAAELIDSEFRTGMS--NRQKNKAKRMAKLFAKQRS---- 224
Query: 233 NMLKRKAKISSKDQSKSWSEDGDMEVPHAQ--NVTTPKGSCGDP-FNSNKADAV-LDEDS 288
R A + + ++S S DG+ E + NV + + N D+ L E++
Sbjct: 225 ----RDA-VETNEKSND-STDGEPEEKRRKTSNVVINQSAVDSKVLIDNIPDSSPLIEET 278
Query: 289 SEHEGDGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAG 337
+E WP SF E+L D+F+P WEVRHG+ LREIL HG S G
Sbjct: 279 NE------WPLESFCEELCNDLFNPSWEVRHGAGTGLREILKAHGKSGG 321
Score = 318 (117.0 bits), Expect = 2.5e-213, Sum P(4) = 2.5e-213
Identities = 69/179 (38%), Positives = 103/179 (57%)
Query: 495 QKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLY 554
Q++ E+L+D IR LC+ +LDRFGD+VSD+VVAPVRETCAQ LG K+M+ + V++T+
Sbjct: 333 QQHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKHMNETGVHKTVD 392
Query: 555 ILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPXXXXXXXXXX 614
+LL++ + +WE+RHG LLGIKY +AVRQ++++ LL VL GL+D
Sbjct: 393 VLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKVLTRIIEGLQDLDDDVRAVAAA 452
Query: 615 XXXXXXXXXXXXDGQTLHSIVMXXXXXXXXXXXXSPSTSSVMNLLAEI--YSQEEMIPK 671
Q + I+ + ST+S+M LL+ + Y Q + K
Sbjct: 453 SLVPVVESLVYLQTQKVPFIINTLWDALLELDDLTASTNSIMTLLSSLLTYPQVQQCRK 511
Score = 179 (68.1 bits), Expect = 2.5e-213, Sum P(4) = 2.5e-213
Identities = 78/341 (22%), Positives = 138/341 (40%)
Query: 823 MFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITV-GSDLEMSV 881
M P LP + K RA + + G V R G + + ++ + G+D M
Sbjct: 610 MMQPSHLPIDLNMLLEVKARA---KEKTGGKV-----RQGQSQSKVLQEYIAGADTVMED 661
Query: 882 TNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEE 941
TR + A+KL + DP N +T + ++ + +
Sbjct: 662 PTTRDFVVMRARMMAAKLLGALCCCICDPSVNVVTQEIKPAESLGQLLLFHLNSKSALQR 721
Query: 942 LPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAM 1001
+ A V+ K+ LA T L Y E++ + +M+NE QL+ ++
Sbjct: 722 I-SVALVICEWAALQKECRAVTLAVQPRLLDTLSEHLYYDEIAIPFTRMQNECKQLISSL 780
Query: 1002 ETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRM 1061
+ + E+ N ++ + D A + + + S +L+ Q+L ++S +Q++
Sbjct: 781 ADAHI--EV--GNRVNNNVFTIDQANDLVTTVF---NEVTSSFNLNPQVLQQLDSKRQQV 833
Query: 1062 -LT---TSGYLKCVQSNLHXXXXXXXXXXXXWMSELPARLNPIILPLMASIKRXXXXXXX 1117
+T T+ + +Q +H + +LP +LNPII PLM +IK+
Sbjct: 834 QMTVTETNQEWQVLQLRVHTFAACAVVS----LQQLPEKLNPIIKPLMETIKKEENTLVQ 889
Query: 1118 XXXXXXXXXXIADCIARKPSPNDKLIKNICSLTSMDPCETP 1158
+ C R P PN K+IKN+CS +DP TP
Sbjct: 890 NYAAQWMAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTP 930
Score = 126 (49.4 bits), Expect = 9.7e-208, Sum P(4) = 9.7e-208
Identities = 67/227 (29%), Positives = 96/227 (42%)
Query: 745 ESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVW-RLLVQSPVEDLEAAGGKFM 803
+ S W + IL D LR +FQ +LES++EIL +VW LL ++ V+ + AA +M
Sbjct: 544 QDQNSSSWLTPILPDMLRHIFQFCVLESSQEILDLIHKVWMELLSKASVQYVVAAACPWM 603
Query: 804 SSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAV-KLENDSSGSVDLPQERNG 862
++W+ L P S L P+ L KA AK + K+ S S L QE
Sbjct: 604 AAWLCLMMQP--SHL-------PIDLNMLLEVKARAKEKTGGKVRQGQSQSKVL-QEYIA 653
Query: 863 DTSTNSVKITVGSDLEMSVTNTRVVTASALGIFASKLHEGSIQFV---IDP-------LW 912
T T + V R++ A LG + + S+ V I P L
Sbjct: 654 GADTVMEDPTTR---DFVVMRARMMAAKLLGALCCCICDPSVNVVTQEIKPAESLGQLLL 710
Query: 913 NALTSFSGVQRQVAAMVFISWF---KEIKSEELPGSAAVLPNLPGHL 956
L S S +QR A+V W KE ++ L +L L HL
Sbjct: 711 FHLNSKSALQRISVALVICEWAALQKECRAVTLAVQPRLLDTLSEHL 757
Score = 52 (23.4 bits), Expect = 2.6e-185, Sum P(4) = 2.6e-185
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 563 PEWEIRHGSLLGIKYLV 579
P WE+RHG+ G++ ++
Sbjct: 297 PSWEVRHGAGTGLREIL 313
Score = 49 (22.3 bits), Expect = 5.4e-185, Sum P(4) = 5.4e-185
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 303 VEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPEL 343
V+ L+ + WEVRHG ++ ++ L +P++
Sbjct: 391 VDVLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKV 431
Score = 47 (21.6 bits), Expect = 2.3e-55, Sum P(3) = 2.3e-55
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 697 DFQANPYMLSMLAPRLWPFMRHSITSVRHSAIR 729
D + +P ++ L P L+ +++ T+VRH A R
Sbjct: 1092 DSELHPLLVLHL-PHLYMCLQYPSTAVRHMAAR 1123
Score = 46 (21.3 bits), Expect = 1.2e-167, Sum P(3) = 1.2e-167
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 318 RHGSVMALREILTHHGASAGVFMPEL 343
R G+ AL I+ H G V +P L
Sbjct: 1019 RRGAEFALTTIVKHFGGEMAVKLPHL 1044
Score = 42 (19.8 bits), Expect = 6.8e-171, Sum P(4) = 6.8e-171
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 886 VVTASALGIFASK--LHEGSIQFVIDPLWNAL 915
V AS + + S L + F+I+ LW+AL
Sbjct: 449 VAAASLVPVVESLVYLQTQKVPFIINTLWDAL 480
Score = 42 (19.8 bits), Expect = 6.8e-171, Sum P(4) = 6.8e-171
Identities = 22/102 (21%), Positives = 39/102 (38%)
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
V R A LG+ ++E + +D L LT R ++ I + ++ +
Sbjct: 364 VAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRH-GGLLGIKYALAVRQD 422
Query: 941 ELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAE 982
+ +LP + + + L DL D SL+P E
Sbjct: 423 VIN---TLLPKVLTRIIEGLQDL--DDDVRAVAAASLVPVVE 459
Score = 38 (18.4 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
E+R G+ +L + + LHG+L
Sbjct: 1261 ELRKYQQDGVNWLAFLNKYKLHGIL 1285
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 1323 (470.8 bits), Expect = 1.9e-187, Sum P(4) = 1.9e-187
Identities = 363/1095 (33%), Positives = 562/1095 (51%)
Query: 708 LAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQN 767
L PRL+PF+RHSIT+VR + +RT+ L E S W I TLR+V+QN
Sbjct: 580 LVPRLFPFLRHSITNVRKAVLRTILEFLSI-------EDSSTKAW---INAKTLRLVYQN 629
Query: 768 LLLESNEEILQCSDRVW-RLLVQSPVE--DLEAAGGKFMSSWIELATTPFGSSLDATKMF 824
LL+E N ++L S +V+ +LL++ +++ K S + L TP G S M
Sbjct: 630 LLVEQNIDVLNLSAQVYEKLLLEMNNNKFNIDVIFTKQSKSLLTLTMTPIGISRHTYSMN 689
Query: 825 WPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGS-----DLEM 879
+ + + + +M ++D G P E D +K+ + S D+ +
Sbjct: 690 TTLIM------RPSGEMLGPLNDDDCRGKKRKPDESTTDIPIEDLKVNIDSPIYKGDVML 743
Query: 880 ----SVTNTRVVTASALGIFASKLH-EGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWF 934
+ R ++A G S + E ++ + + + L S ++A + +
Sbjct: 744 VGYDKLIGMRCAASAAFGKTLSYMQSEETLLKIFEAISGYLKSCHATSVLLSAFIVEEYA 803
Query: 935 KEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEA 994
+K L + ++ L G L + L +P +SL + EL T +R
Sbjct: 804 TALKERGLKPNEKIVTLLSGSLNKVL------QEP-----ESLPHFRELVPTLKAVRTSC 852
Query: 995 SQLLRAMETSSMFTEMLSANEIDV----ESLSADNAISF--ASKL-----QLLGSNSDGS 1043
QL T++ + +I V E+ + A A K+ L + +
Sbjct: 853 LQLFDVFVTAAKLSPS-RIPQIPVVVQGEAEAGPGAFGLETAEKICNETFVKLKKHLSAT 911
Query: 1044 ESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHXXXXXXXXXXXXWMSELPARLNPIILP 1103
LS +E K R+L + ++ ++ +P +LNPII
Sbjct: 912 HRLSANQA--LEDAKHRILVAMEESRLAFTSRANSIFAGFAAASLALAGVPKKLNPIIKS 969
Query: 1104 LMASIKRXXXXXXXXXXXXXXXXXIADCI-ARKPSPNDKLIKNICSLTSMDPCETPQAAA 1162
LM S+K + I K +DK++KN+C+ +D E P+
Sbjct: 970 LMESVKSEETLVLQKRSVFSVARLVQQLIEVGKKGASDKIVKNLCAFLCVDTSEVPEF-- 1027
Query: 1163 MGSMEIIDDQDFLSFGSSTGKQKSRAHML-AGGEDRSRVEGFISRRGSELALRHLCGKFG 1221
+I ++ LS K++++ A +R+ E I R G+ + L L +G
Sbjct: 1028 --HHNVIFKENILSLR----KEEAQIDPTDAAAHERAVREAKIKRNGALMTLDQLVHIYG 1081
Query: 1222 VSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEAL 1281
LFD++ KL + + E L S +++ + + ++ Q +I+ + ++R++ P +D+ L
Sbjct: 1082 PKLFDQVTKLKEMMIEPL--RYLSKTEEV--SQDELKG-QSVIDALGILRALFPKMDKEL 1136
Query: 1282 KPKLLTLLPCIFKCVCHSHVSV-RLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSV 1340
P+++ L +F S SV R + ++C+ ++ + +V + +PML + V
Sbjct: 1137 YPEVIDNLD-LFLPGLQSEYSVFRYSTAKCLATICSVVPAKAFIFIVNSVLPMLKNAGDV 1195
Query: 1341 HARQGAGMLISLLVQGLGAEXXXXXXXXXXXXXRCMSDCDQSVRQSVTRSFASLVPLLPL 1400
RQGA + + +GA MSD D VR +FAS++ L+PL
Sbjct: 1196 KQRQGAIETVYHISAAMGASILPYVMFLIVPVMGRMSDSDHDVRVLAATTFASIIKLVPL 1255
Query: 1401 ARGVSPPTGLTEGLSRNAE-DAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAF 1459
G+ P + + L + + F++Q++D + I + L +K TLR+YQQEG+NWLAF
Sbjct: 1256 EAGIPDPEDMPQELLEGRDRERDFIQQMMDPTKIKSFDLPVTIKATLRKYQQEGVNWLAF 1315
Query: 1460 LKRFKLHGILCDDMGLGKTLQASAIVASD--IAER--RASNSIEEIH-PSLIICPSTLVG 1514
L ++ LHGILCDDMGLGKTLQ IV+SD I E + + S E PSL+ICP +L+G
Sbjct: 1316 LNKYHLHGILCDDMGLGKTLQTICIVSSDHHIREENFKETGSAEYRKLPSLVICPPSLIG 1375
Query: 1515 HWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWN 1574
HW EI ++ M L Y GS RI LR Q +V++TSYDV R D + L + +N
Sbjct: 1376 HWEQEINQY--APFMKVLVYAGSPSIRIPLRGQIPDADVVVTSYDVCRNDVESLTKHDYN 1433
Query: 1575 YCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTER 1634
YC+LDEGHIIKN+ SK++ +VK++KA HRLILSGTPIQNN+ +LWSLFDFLMPGFLGTE+
Sbjct: 1434 YCVLDEGHIIKNASSKLSKSVKRVKAEHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEK 1493
Query: 1635 QFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQD 1694
F + KP+ A+R+SK S+K+ EAG LAME+LHKQV+PF+LRR K++VLSDLP KIIQD
Sbjct: 1494 VFHEKFAKPIAASRNSKTSSKEQEAGALAMESLHKQVLPFMLRRLKEDVLSDLPPKIIQD 1553
Query: 1695 RYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLK 1754
YC+LS +Q KLY+ F+ +Q K+ I K D + EG THVFQALQY+ K
Sbjct: 1554 YYCELSDLQKKLYKDFAKTQ-KETI----KTDVQGSEKEGK-------THVFQALQYMRK 1601
Query: 1755 LCSHPLLVLGDKSPE 1769
LC+HP LV+ ++ P+
Sbjct: 1602 LCNHPALVMSEQHPK 1616
Score = 258 (95.9 bits), Expect = 1.9e-187, Sum P(4) = 1.9e-187
Identities = 89/309 (28%), Positives = 145/309 (46%)
Query: 483 LMNWLKLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFK 542
+MN K + + N L+D A+R I LDRFGDYVSD VVAPVRE+ AQ L A
Sbjct: 369 VMN--KTLQENDTNNAATLEDLAVRICVIFVLDRFGDYVSDTVVAPVRESAAQTLAALLI 426
Query: 543 YMHPSLVYETLYILLQMQRRPE-----WEIRHGSLLGIKYLVAVRQEMLHG---LLGYVL 594
+++ V + L M + + WE +HG +LG++YLV+VR ++L + V+
Sbjct: 427 HLNEETVIRIFHCLNSMVLQKDMVAKCWEAKHGGILGVRYLVSVRTDILLANPEMFDDVV 486
Query: 595 PACRAGLEDPXXXXXXXXXXXXXXXXXXXXXXDGQTLHSIV-MXXXXXXXXXXXXSPSTS 653
+GL++ + +++ + S S
Sbjct: 487 TMVLSGLKESDDDVQSVAALTLTPIASQFVTTRKNVIGTLLTVIWDCLVNLRDDLSASIG 546
Query: 654 SVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLW 713
SVM+LLA++ S +E+I E+++ D E ++ N + L PRL+
Sbjct: 547 SVMDLLAKLCSHKEVI---------------EIMQ-QDANENKE---NSF--ENLVPRLF 585
Query: 714 PFMRHSITSVRHSAIRTLERLL---EAGYKRMIAESSGGSFWPSFILG---DTLRI---V 764
PF+RHSIT+VR + +RT+ L ++ K I + + + ++ D L + V
Sbjct: 586 PFLRHSITNVRKAVLRTILEFLSIEDSSTKAWINAKTLRLVYQNLLVEQNIDVLNLSAQV 645
Query: 765 FQNLLLESN 773
++ LLLE N
Sbjct: 646 YEKLLLEMN 654
Score = 163 (62.4 bits), Expect = 1.9e-187, Sum P(4) = 1.9e-187
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 6 SRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVXXX 65
SRL+RL+ LL+TGST R TAA Q+ ++AK HP+D +LL +V YL+SK W+TR+
Sbjct: 2 SRLDRLVVLLETGSTPFIRNTAADQLSDLAKAHPEDTINLLGRVYPYLKSKKWETRISAA 61
Query: 66 XXXXXXXQNVKL 77
N L
Sbjct: 62 RAFGGIVNNAPL 73
Score = 145 (56.1 bits), Expect = 1.9e-187, Sum P(4) = 1.9e-187
Identities = 66/244 (27%), Positives = 106/244 (43%)
Query: 117 VSFTSFDLNKVLEFGA-LLASGGQEYDIA-IDNSKNPRERLARQKQNL--KRRLGLDVCE 172
++F SF L+++++ G LLAS + D N R+ R + ++ K D+ +
Sbjct: 133 INFDSFSLHELIKCGTKLLASKSDDIDPEDYTNDVTLLGRIKRHRSSIIPKEETKSDLSK 192
Query: 173 QFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAH---NIQRLVSSMVPSVISKRPS- 228
+ D E+ IV + D SAS + VSS + +R +
Sbjct: 193 E--SSPDAHTKEEPIVKQEPGTQQQHDNLASASASPAPPTGSNKPVSSARLKAMQRRKAK 250
Query: 229 ARELNMLK--RKAKISSKDQSKSWSEDGD-MEVPHAQNVTTPKGSCGDPFNSNKADAVLD 285
A N R IS S+ E+G+ M++ + TP+ NK V++
Sbjct: 251 ANAKNGANKIRSVDISQSSLSRQMIENGEGMDIDSKDS--TPQFDVTSQQGGNKL--VVE 306
Query: 286 EDSSE--------HEGDGL-WPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASA 336
SSE ++ GL W F+ E L+ D+FD WE+RHG+ + LRE++ HG A
Sbjct: 307 TKSSELSPLLSQQNKVAGLIWQFQGVYELLLADLFDDQWEIRHGAALGLRELVKKHGKGA 366
Query: 337 GVFM 340
G M
Sbjct: 367 GRVM 370
Score = 62 (26.9 bits), Expect = 2.5e-153, Sum P(3) = 2.5e-153
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 549 VYETLYILLQMQRRPEWEIRHGSLLGIKYLV 579
VYE +LL +WEIRHG+ LG++ LV
Sbjct: 332 VYE---LLLADLFDDQWEIRHGAALGLRELV 359
Score = 53 (23.7 bits), Expect = 2.2e-162, Sum P(3) = 2.2e-162
Identities = 30/136 (22%), Positives = 59/136 (43%)
Query: 274 PFNSNKADAVLDEDSSEHEGDGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHG 333
PF N A L + + H D + + + ++ + WE R + A I+ +
Sbjct: 17 PFIRNTAADQLSDLAKAHPEDTI----NLLGRVYPYLKSKKWETRISAARAFGGIVNN-- 70
Query: 334 ASAGVFMPELGPDGALNVEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPP 393
A ++ P + + +E KD + + +K E E D V+ E E ++KK + E+
Sbjct: 71 --APLWDPN--SEKQIKLE-KDAEQVFVKEEIETDPIVKKEFPEDEIIIKKEQDEELQK- 124
Query: 394 LMDTMVSPVNCDGCNI 409
L + + +N D ++
Sbjct: 125 LTKNLSNLINFDSFSL 140
Score = 51 (23.0 bits), Expect = 3.7e-152, Sum P(3) = 3.7e-152
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 309 DMFDPVWEVRHGSVMALREILT 330
DM WE +HG ++ +R +++
Sbjct: 448 DMVAKCWEAKHGGILGVRYLVS 469
Score = 49 (22.3 bits), Expect = 8.1e-16, Sum P(3) = 8.1e-16
Identities = 21/85 (24%), Positives = 38/85 (44%)
Query: 1228 LPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQI-LINNIQLVRSIAPMLDEALKPKLL 1286
L +WDCL + + + +I SV D L ++ +++ + +E +
Sbjct: 527 LTVIWDCLVNL--------RDDLSASIGSVMDLLAKLCSHKEVIEIMQQDANENKENSFE 578
Query: 1287 TLLPCIFKCVCHSHVSVRLAASRCI 1311
L+P +F + HS +VR A R I
Sbjct: 579 NLVPRLFPFLRHSITNVRKAVLRTI 603
Score = 39 (18.8 bits), Expect = 8.5e-15, Sum P(3) = 8.5e-15
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 1736 NVSAKASTHVFQALQYLLKLCSH 1758
N+ S + + L KLCSH
Sbjct: 536 NLRDDLSASIGSVMDLLAKLCSH 558
Score = 37 (18.1 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 1718 EISSMVKVDESADKGEGNNVSAKASTHVF 1746
+IS + + GEG ++ +K ST F
Sbjct: 264 DISQSSLSRQMIENGEGMDIDSKDSTPQF 292
Score = 37 (18.1 bits), Expect = 6.2e-05, Sum P(3) = 6.2e-05
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 1025 NAISFASKLQLLGSNSDGSESLSRQMLDDIESI 1057
NA + A+K++ S SLSRQM+++ E +
Sbjct: 252 NAKNGANKIR---SVDISQSSLSRQMIENGEGM 281
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 1180 (420.4 bits), Expect = 2.1e-184, Sum P(5) = 2.1e-184
Identities = 273/638 (42%), Positives = 375/638 (58%)
Query: 1173 DFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLW 1232
+ LS ++T + +AH E E I R G+ A+ LC FG + +K+
Sbjct: 1081 EILSATNATAHIELKAHEAKEAEAN---ECRIQRLGAACAIEKLCRIFGEQIIEKVAVFQ 1137
Query: 1233 DCL---TEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLL 1289
+ E + + + +L V + L++++QL+ + AP L AL P++ LL
Sbjct: 1138 HLMFGKVEQFVKEAYDWRLGSLLPDLGVCNE--LVSSMQLIETAAPHLHVALHPQMFALL 1195
Query: 1290 PCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGML 1349
P + VCH +VR A+RCI +A+ M VV + +P+LG + + RQGA
Sbjct: 1196 PSLGFIVCHPLKAVRHMAARCIAVLAEIDACQTMQFVVHDLLPLLGKIEQLIERQGAIEA 1255
Query: 1350 ISLLVQGLGAEXXXXXXXXXXXXXRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTG 1409
I +V L + MSD D+SVR T FA+LV L+PL G +
Sbjct: 1256 IERVVSRLQIKVVPYIVLLVVPLLGAMSDPDESVRLLSTHCFANLVQLMPLD-GKTEQLK 1314
Query: 1410 LTEGLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGIL 1469
+R D +FL+ L + I +YK+ + V LR YQQ GINWL FL ++ LHGIL
Sbjct: 1315 SDPLQARKTRDREFLDYLFNPKSIPNYKVPVPISVELRCYQQAGINWLWFLNKYNLHGIL 1374
Query: 1470 CDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDV-SL 1528
CDDMGLGKTLQ I+A D R+ +N + + PSL+ICP TL GHW +E+EKF+D S+
Sbjct: 1375 CDDMGLGKTLQTICILAGDHMHRQTAN-LANL-PSLVICPPTLTGHWVYEVEKFLDQGSV 1432
Query: 1529 MSTLQYVGSAQDRIALREQFD-KHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNS 1587
+ L Y G R LR K N+++ SYD VRKD D+ + +NYC+LDEGHIIKN
Sbjct: 1433 LRPLHYYGFPVGREKLRSDIGTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNG 1492
Query: 1588 KSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAA 1647
K+K + A+K+LKA HRLILSGTPIQNN+ +LWSLFDFLMPGFLGTE+QF + +P++++
Sbjct: 1493 KTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSS 1552
Query: 1648 RDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLY 1707
RD+K SAK+ EAGVLAMEALH+QV+PFLLRR K++VL DLP KI QD C+LS +QL+LY
Sbjct: 1553 RDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLY 1612
Query: 1708 EKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKS 1767
E FS K + + D S+ N+SAK TH+FQAL+YL +C+HP LVL +
Sbjct: 1613 EDFSNKHLKDCLDKLG--DSSSASMVTENLSAK--THIFQALRYLQNVCNHPKLVL--RQ 1666
Query: 1768 PESLLCHLSELFPGSS--DIISELHKASSLSQISCSSG 1803
E L S+L +S D I K +L Q+ G
Sbjct: 1667 SEELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCG 1704
Score = 278 (102.9 bits), Expect = 2.1e-184, Sum P(5) = 2.1e-184
Identities = 53/93 (56%), Positives = 69/93 (74%)
Query: 495 QKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLY 554
+ + +L+D A+R LC+L LDRFGD+VSDQVVAPVRETCAQ LG K M S V +
Sbjct: 376 EAHSRWLEDAALRLLCVLCLDRFGDFVSDQVVAPVRETCAQVLGTLVKEMEASKVQRIVN 435
Query: 555 ILLQM-QRRPEWEIRHGSLLGIKYLVAVRQEML 586
ILLQ+ Q + EW++RHG LLG+KY+ VR+E+L
Sbjct: 436 ILLQLIQHKNEWDVRHGGLLGLKYVFVVREELL 468
Score = 259 (96.2 bits), Expect = 2.1e-184, Sum P(5) = 2.1e-184
Identities = 83/253 (32%), Positives = 127/253 (50%)
Query: 5 SSRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVXX 64
+SRL+RL LL+TGST ATR AA+QIGE+ K +P +L++LL ++ YL S SW+TR+
Sbjct: 2 TSRLDRLFILLETGSTAATRQAAAKQIGEVQKLYPHELHALLNRLVGYLHSTSWETRIAA 61
Query: 65 XXXXXXXXQNV-----KLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVAS--V 117
+ V + L + C + + ED +S + +
Sbjct: 62 AQTVEAILKQVPPWQPEFQVLPKKERCATN--TATAAAAAEEDSCQSSGSNSTTASERLL 119
Query: 118 SFTSFDLNKVLEFGA-LLASGGQEYDI-----AIDNSKNPRE---RLARQKQNLKRRLGL 168
SF FDL ++L GA L+ S G E+D+ A + R RL+RQ+ L +LGL
Sbjct: 120 SFDEFDLQQILHKGARLIGSEGNEFDVQEEQPASGGGEEDRSLASRLSRQRAVLNDKLGL 179
Query: 169 DVCEQF-VDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVIS-KR 226
+ V+L DMI DED+ LN G+ ++ +A ++ L++ + S +
Sbjct: 180 TTAAKLGVNLTDMITDEDVA---LNRSGSTYN----VNAEKLPVEHLLNIKTAANGSGQA 232
Query: 227 P-SARELNMLKRK 238
P S RE+N KRK
Sbjct: 233 PLSCREMNRAKRK 245
Score = 164 (62.8 bits), Expect = 2.1e-184, Sum P(5) = 2.1e-184
Identities = 105/439 (23%), Positives = 184/439 (41%)
Query: 748 GGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQ-SPVEDLEAAGGKFMSSW 806
G S W +L LR ++Q +L+E +I + +VW L+Q + + L A F+SSW
Sbjct: 619 GVSDWKWELLQQALRHIYQRILVEPQADIQALARQVWSNLIQHADLGALLHAACPFVSSW 678
Query: 807 IELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTST 866
I L+ P + DA + A S + ++ R ++ ++ G++ L Q S
Sbjct: 679 ICLSMQPPRLAFDAGVLIR--AGGDVSTPGSTSRKRTPRIGDELGGNI-LAQ------SN 729
Query: 867 NSVKITVGSD----LEMSVTN---TRVVTASALGIFASKLHEGSIQFVIDP--------- 910
S+K+ +G L++ N R+ ++ ALG + L + + V P
Sbjct: 730 ASLKLYLGGSEATPLDVRDANFMRARISSSRALGALSHYLVQPAPGVVYTPQTESPTDCY 789
Query: 911 ---LWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACS 967
L L + S VQR V ++ W E + PG PNL L Q + S
Sbjct: 790 TKVLLGHLNAHSAVQRIVCGLIIAFWALEDEPVR-PGP----PNLQEKLHQCV------S 838
Query: 968 DPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSM----FT--EMLSANEID-VES 1020
+ Y Y E++ + ++ EA + ++ + + F ++L+ ++I+ V +
Sbjct: 839 EYVY--------YDEVAISLTRLLQEAQDFIATLKQNKIPINDFNNAKILTLDQIEAVAT 890
Query: 1021 LSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHXXXX 1080
++N S+ K ++L D E R+ + +Q + + + S L
Sbjct: 891 TLSENLRSYPLKPKVL----DMLEERRRRAAFRPPTSRQPVSKAA-----IMSVLRQHSL 941
Query: 1081 XXXXXXXXWMSELPARLNPIILPLMASIKRXXXXXXXXXXXXXXXXXIADCIARKPSPND 1140
+ LP +LNP++ PLM SIKR + R PSPN
Sbjct: 942 APSAA----LHCLPDKLNPVVKPLMESIKREQCLQLQQLSAEFLVHLMDQVCDRNPSPNS 997
Query: 1141 KLIKNICSLTSMDPCETPQ 1159
K++ N+C+L DP TP+
Sbjct: 998 KILNNLCTLLRSDPEFTPK 1016
Score = 145 (56.1 bits), Expect = 2.0e-172, Sum P(5) = 2.0e-172
Identities = 61/225 (27%), Positives = 97/225 (43%)
Query: 135 ASGGQEYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQF-VDLNDMIKDEDL------- 186
ASGG E D ++ + RL+RQ+ L +LGL + V+L DMI DED+
Sbjct: 152 ASGGGEEDRSLAS------RLSRQRAVLNDKLGLTTAAKLGVNLTDMITDEDVALNRSGS 205
Query: 187 ----------IVHKLN--SHGNGFDRRFYTSASAHNIQRLVSSMVP--SVISKRPSAREL 232
+ H LN + NG + + + +R V SV + P+
Sbjct: 206 TYNVNAEKLPVEHLLNIKTAANGSGQAPLSCREMNRAKRKVCQNTSGCSVTAVTPTCSRR 265
Query: 233 NMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEHE 292
N + + + S + + +E P + + + + F S A AV D + +
Sbjct: 266 NSNSNHS--TGSNHSSNGTTGAAIEEPEKKKLKSTDRQ--EIFYSLNA-AVPDATGTWVD 320
Query: 293 GDGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAG 337
WP +F +L +D+F WEVRHG+ ALRE++ H AG
Sbjct: 321 AVS-WPLENFCSRLFIDLFHAKWEVRHGAATALRELINQHAQGAG 364
Score = 112 (44.5 bits), Expect = 2.1e-184, Sum P(5) = 2.1e-184
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 705 LSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGY-------KRMIAESS---------G 748
+++L P LWPF+ HS +SVR S ++TL L A + + E + G
Sbjct: 560 MAILVPPLWPFLSHSTSSVRRSTLKTLMTLTSADRVKSEPKDENQVKEEADKEEMKLNFG 619
Query: 749 GSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQ 789
S W +L LR ++Q +L+E +I + +VW L+Q
Sbjct: 620 VSDWKWELLQQALRHIYQRILVEPQADIQALARQVWSNLIQ 660
Score = 58 (25.5 bits), Expect = 3.1e-39, Sum P(4) = 3.1e-39
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 1263 LINNIQLVRSIAPML-DEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTIN 1321
L+N Q V SI ML D L LT C+S + + LAA C+ + A+ + ++
Sbjct: 508 LLNPAQ-VSSIVKMLWDLLLDQDELT-------SACNSFMGL-LAAILCLPNAARWVEMD 558
Query: 1322 VMAAVVENAIPMLGDMTSVHARQGAGMLISL 1352
MA +V P L TS R L++L
Sbjct: 559 AMAILVPPLWPFLSHSTSSVRRSTLKTLMTL 589
Score = 56 (24.8 bits), Expect = 2.7e-153, Sum P(4) = 2.7e-153
Identities = 23/72 (31%), Positives = 32/72 (44%)
Query: 666 EEMIPKMVGATSKQE--FDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSV 723
EE K + +T +QE + LN V D G D + P L RL+ + H+ V
Sbjct: 288 EEPEKKKLKSTDRQEIFYSLNAAV-PDATGTWVDAVSWP--LENFCSRLFIDLFHAKWEV 344
Query: 724 RHSAIRTLERLL 735
RH A L L+
Sbjct: 345 RHGAATALRELI 356
Score = 52 (23.4 bits), Expect = 1.1e-160, Sum P(5) = 1.1e-160
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 315 WEVRHGSVMALREILTHHGASAGVFMPE 342
W+VRHG ++ L+ + +++P+
Sbjct: 447 WDVRHGGLLGLKYVFVVREELLPIYLPQ 474
Score = 50 (22.7 bits), Expect = 8.1e-39, Sum P(4) = 8.1e-39
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 701 NPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLE 736
+P M ++L P L + H + +VRH A R + L E
Sbjct: 1188 HPQMFALL-PSLGFIVCHPLKAVRHMAARCIAVLAE 1222
Score = 47 (21.6 bits), Expect = 3.8e-160, Sum P(5) = 3.8e-160
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 564 EWEIRHGSLLGIKYLV 579
+WE+RHG+ ++ L+
Sbjct: 341 KWEVRHGAATALRELI 356
Score = 42 (19.8 bits), Expect = 8.4e-164, Sum P(4) = 8.4e-164
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 649 SPSTSSVMNLLAEIYSQEEMIPKMVGA--TSKQEFDLNEVV 687
SP++ + NL + S E PK+V T KQ +EV+
Sbjct: 994 SPNSKILNNLCTLLRSDPEFTPKLVMPLETLKQTPVSSEVI 1034
Score = 42 (19.8 bits), Expect = 6.9e-15, Sum P(4) = 6.9e-15
Identities = 11/54 (20%), Positives = 24/54 (44%)
Query: 1302 SVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQ 1355
++RL C+ ++ V+A V E +LG + ++++L+Q
Sbjct: 386 ALRLLCVLCLDRFGDFVSDQVVAPVRETCAQVLGTLVKEMEASKVQRIVNILLQ 439
Score = 41 (19.5 bits), Expect = 6.1e-140, Sum P(4) = 6.1e-140
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 472 ETLKNLPENSELMN 485
ETLK P +SE++N
Sbjct: 1022 ETLKQTPVSSEVIN 1035
Score = 41 (19.5 bits), Expect = 1.1e-128, Sum P(3) = 1.1e-128
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 689 ADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLE 736
A +GE + P+ L L RL ++ + R +A +T+E +L+
Sbjct: 25 AKQIGEVQKLY--PHELHALLNRLVGYLHSTSWETRIAAAQTVEAILK 70
Score = 39 (18.8 bits), Expect = 3.8e-140, Sum P(4) = 3.8e-140
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 923 RQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQW 959
R+ A V + KE+++ ++ +L L H +W
Sbjct: 411 RETCAQVLGTLVKEMEASKVQRIVNILLQLIQHKNEW 447
Score = 38 (18.4 bits), Expect = 3.1e-39, Sum P(4) = 3.1e-39
Identities = 20/82 (24%), Positives = 34/82 (41%)
Query: 1711 SGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPES 1770
S + K E +V E ADK E ++ S ++ LQ L+ +LV ++
Sbjct: 591 SADRVKSEPKDENQVKEEADKEE-MKLNFGVSDWKWELLQQALRHIYQRILVEPQADIQA 649
Query: 1771 LLCHLSELFPGSSDIISELHKA 1792
L + +D+ + LH A
Sbjct: 650 LARQVWSNLIQHADLGALLHAA 671
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 1411 (501.8 bits), Expect = 2.4e-179, Sum P(3) = 2.4e-179
Identities = 423/1291 (32%), Positives = 629/1291 (48%)
Query: 497 NCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSL----VYET 552
N ++L D A R LC+L LDRFGDY+SD VVAP+RET Q LGA ++ PS VY
Sbjct: 382 NRQWLDDLACRLLCVLMLDRFGDYISDNVVAPIRETVGQTLGALLSHL-PSRSVVGVYRC 440
Query: 553 LYILLQMQR-----RPEWEIRHGSLLGIKYLVAVRQEML---HGLLGYVLPACRAGLEDP 604
LY L+ MQ RP WE+ HG ++G++YLVAVR+++L L+ VL A GL +
Sbjct: 441 LYRLI-MQTDLDFDRPVWEVCHGGMIGLRYLVAVRKDLLVKDSNLMDGVLEAVMHGLGNY 499
Query: 605 XXXXXXXXXXXXXXXXXXXXXXDGQTLHSIV-MXXXXXXXXXXXXSPSTSSVMNLLAEIY 663
TL S++ + S ST SVM+LLA++
Sbjct: 500 DDDVRAVSAATLVPIAEEFVNTRQSTLGSLMNIVWNCLSNLQDDLSASTGSVMDLLAKLC 559
Query: 664 SQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSV 723
+ + ++ M E AD F AN L PRL+PF+RH+ITSV
Sbjct: 560 TFQPVLDAM-----------KENAAADSESS---F-AN------LVPRLYPFLRHTITSV 598
Query: 724 RHSAIRTLERLL--EAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSD 781
R + +R L L E + G +L + V + L L+ E+L+ D
Sbjct: 599 RSAVLRALTTFLRLEGEGTNDWVDGKGMRLVFQNLLVERNEDVLK-LSLQVWSELLKSLD 657
Query: 782 RVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSL-----DATKMFWPVALPRKSHFK 836
R +++S D E + + L+ PFG L +A+ P LP
Sbjct: 658 S--RGVIKS---DPELPN--HIQPLLALSMAPFGVPLYPIPMNASLFIKPSGLPFSMVQP 710
Query: 837 AAAKMRAVKLENDSSG-------SVDLPQERNGDTSTNSVKI-TVGSDLEM----SVTNT 884
A AK + + G S + +ST+ V + D++M ++ +
Sbjct: 711 APAKASPTSTTSSTDGPKKRGRKSEKKEPPPSSSSSTHDVDAHMLKGDIDMVGADTMLRS 770
Query: 885 RVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSG---VQRQVAAMVFISWFKEIKSEE 941
++ A ALG S + + D LW + G Q+A+ + I + ++ +
Sbjct: 771 KIYAARALGELLSLWDKNGL----DSLWETIVGGLGHPASSSQLASAMIIEEYAKVAGPD 826
Query: 942 LPGSAAVLPNLP----GHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQL 997
+ A+ L G W D+ SLL T+ E + L
Sbjct: 827 SKYAGALCEKLQTIVEGERPPWYSDISCYLSVARAQCHSLL------NTF----RETAPL 876
Query: 998 LRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESL--SRQMLDDIE 1055
LR+ + +S+ A + + + NA S A +++G + + + L Q + +
Sbjct: 877 LRSEKLASL------AVVVQGDPDAGPNAFSLAKAYEVIGPDFEKLKRLLSPAQRITASK 930
Query: 1056 SIKQRMLTTSG---YLKCVQSNLHXXXXXXXXXXXXWMSELPARLNPIILPLMASIKRXX 1112
+ + +T + K + +P + +I +M SIK
Sbjct: 931 VLNETRVTAENAINFAKEARDTRDMRIKAAAAGALINFGAIPKKPGNLIKGVMESIKTEE 990
Query: 1113 XXXXXXXXXXXXXXXIADCI-ARKPSPNDKLIKNICSLTSMDPCETPQAAAMGSMEIIDD 1171
+ A K P DK+I N+ +D ETP+ E +
Sbjct: 991 SAELQQRSATAVAVLVEHYTSAAKRGPVDKVIGNLVKYCCVDTSETPE------FERNKE 1044
Query: 1172 QDFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKL 1231
+ L S ++ R H A ++ E I RRG++ AL L KFG L +K+P L
Sbjct: 1045 HEGLIL-SLRKEEDRREHADAATFEKEAREARIMRRGAKDALEQLAVKFGAQLTEKVPNL 1103
Query: 1232 WDC----LTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLT 1287
L E L D P+N I+ ++V ++ ++ + +R++ P D L P +++
Sbjct: 1104 ASLVERPLKEALSGDLPAN----IVDSDNVLGQEV-VDGLSTLRALLPKFDPGLYPWVVS 1158
Query: 1288 LLPCIFKCV-CHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGA 1346
L+P + K + C V +R AA++C ++ +T+ M +VE +P + + VH RQGA
Sbjct: 1159 LMPLVVKALQCRLSV-IRYAAAKCFATICSVVTVEGMTMLVEKVLPTINNALDVHHRQGA 1217
Query: 1347 GMLISLLVQGLGAEXXXXXXXXXXXXXRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSP 1406
I L+ + MSD D VR T SFA+LV L+PL G+
Sbjct: 1218 VECIYHLIHVMEDNILPYVIFLVVPVLGRMSDSDNDVRLLATTSFATLVKLVPLEAGIPD 1277
Query: 1407 PTGLTEGLSRNAE-DAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKL 1465
P GL+E L + + +F+ Q+LD+ ++++KL +K LR YQQEG+NWLAFL R+ L
Sbjct: 1278 PPGLSEKLLEGRDRERKFMSQMLDSRKVEEFKLPVAIKAELRPYQQEGVNWLAFLNRYNL 1337
Query: 1466 HGILCDDMGLGKTLQASAIVASDI---AERRASNSIEEIH--PSLIICPSTLVGHWAFEI 1520
HGILCDDMGLGKTLQ IVASD AE A E PSLIICP +L GHW E+
Sbjct: 1338 HGILCDDMGLGKTLQTICIVASDHHMRAEDFAKTQRPESRKVPSLIICPPSLSGHWQQEV 1397
Query: 1521 EKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDE 1580
+++ ++ + YVG +R L+ ++++TSYD+ R D D L + WNYC+LDE
Sbjct: 1398 KQY--APFLNCVAYVGPPAERSKLQGSLADADIVVTSYDICRNDNDVLRPISWNYCVLDE 1455
Query: 1581 GHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATY 1640
GH+IKN K+K+T+AVK++ + HRLILSGTPIQNN+ +LWSLFDFLMPGFLGTE+ F +
Sbjct: 1456 GHLIKNPKAKVTMAVKRINSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKVFLDRF 1515
Query: 1641 GKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLS 1700
KP+ +R SK S+K+ EAG LA+EALHKQV+PFLLRR K+EVL+DLP KIIQ+ YCD S
Sbjct: 1516 AKPIATSRFSK-SSKEQEAGALAIEALHKQVLPFLLRRLKEEVLNDLPPKIIQNYYCDPS 1574
Query: 1701 AVQLKLYEKFSGSQAKQEISSMVKVDESADK 1731
+Q KL+E F+ + K + + E ADK
Sbjct: 1575 ELQKKLFEDFTKKEQKA-LQEKMGSSEKADK 1604
Score = 1332 (473.9 bits), Expect = 1.3e-169, Sum P(3) = 1.3e-169
Identities = 378/1143 (33%), Positives = 569/1143 (49%)
Query: 708 LAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQN 767
L PRL+PF+RH+ITSVR + +R L L R+ E G + W + G +R+VFQN
Sbjct: 583 LVPRLYPFLRHTITSVRSAVLRALTTFL-----RL--EGEGTNDW---VDGKGMRLVFQN 632
Query: 768 LLLESNEEILQCSDRVWRLLVQS----PVEDLEAAGGKFMSSWIELATTPFGSSL----- 818
LL+E NE++L+ S +VW L++S V + + + L+ PFG L
Sbjct: 633 LLVERNEDVLKLSLQVWSELLKSLDSRGVIKSDPELPNHIQPLLALSMAPFGVPLYPIPM 692
Query: 819 DATKMFWPVALPRKSHFKAAAKMRAVKLENDSSG-------SVDLPQERNGDTSTNSVKI 871
+A+ P LP A AK + + G S + +ST+ V
Sbjct: 693 NASLFIKPSGLPFSMVQPAPAKASPTSTTSSTDGPKKRGRKSEKKEPPPSSSSSTHDVDA 752
Query: 872 -TVGSDLEM----SVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSG---VQR 923
+ D++M ++ +++ A ALG S + + D LW + G
Sbjct: 753 HMLKGDIDMVGADTMLRSKIYAARALGELLSLWDKNGL----DSLWETIVGGLGHPASSS 808
Query: 924 QVAAMVFISWFKEIKSEELPGSAAVLPNLP----GHLKQWLLDLLACSDPTYPTKDSLLP 979
Q+A+ + I + ++ + + A+ L G W D+ SLL
Sbjct: 809 QLASAMIIEEYAKVAGPDSKYAGALCEKLQTIVEGERPPWYSDISCYLSVARAQCHSLL- 867
Query: 980 YAELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSN 1039
T+ E + LLR+ + +S+ A + + + NA S A +++G +
Sbjct: 868 -----NTF----RETAPLLRSEKLASL------AVVVQGDPDAGPNAFSLAKAYEVIGPD 912
Query: 1040 SDGSESL--SRQMLDDIESIKQRMLTTSG---YLKCVQSNLHXXXXXXXXXXXXWMSELP 1094
+ + L Q + + + + +T + K + +P
Sbjct: 913 FEKLKRLLSPAQRITASKVLNETRVTAENAINFAKEARDTRDMRIKAAAAGALINFGAIP 972
Query: 1095 ARLNPIILPLMASIKRXXXXXXXXXXXXXXXXXIADCI-ARKPSPNDKLIKNICSLTSMD 1153
+ +I +M SIK + A K P DK+I N+ +D
Sbjct: 973 KKPGNLIKGVMESIKTEESAELQQRSATAVAVLVEHYTSAAKRGPVDKVIGNLVKYCCVD 1032
Query: 1154 PCETPQAAAMGSMEIIDDQDFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGSELAL 1213
ETP+ E + + L S ++ R H A ++ E I RRG++ AL
Sbjct: 1033 TSETPE------FERNKEHEGLIL-SLRKEEDRREHADAATFEKEAREARIMRRGAKDAL 1085
Query: 1214 RHLCGKFGVSLFDKLPKLWDC----LTEVLIPDGPSNKKKIILAIESVRDPQILINNIQL 1269
L KFG L +K+P L L E L D P+N I+ ++V ++ ++ +
Sbjct: 1086 EQLAVKFGAQLTEKVPNLASLVERPLKEALSGDLPAN----IVDSDNVLGQEV-VDGLST 1140
Query: 1270 VRSIAPMLDEALKPKLLTLLPCIFKCV-CHSHVSVRLAASRCITSMAKSMTINVMAAVVE 1328
+R++ P D L P +++L+P + K + C V +R AA++C ++ +T+ M +VE
Sbjct: 1141 LRALLPKFDPGLYPWVVSLMPLVVKALQCRLSV-IRYAAAKCFATICSVVTVEGMTMLVE 1199
Query: 1329 NAIPMLGDMTSVHARQGAGMLISLLVQGLGAEXXXXXXXXXXXXXRCMSDCDQSVRQSVT 1388
+P + + VH RQGA I L+ + MSD D VR T
Sbjct: 1200 KVLPTINNALDVHHRQGAVECIYHLIHVMEDNILPYVIFLVVPVLGRMSDSDNDVRLLAT 1259
Query: 1389 RSFASLVPLLPLARGVSPPTGLTEGLSRNAE-DAQFLEQLLDNSHIDDYKLGTELKVTLR 1447
SFA+LV L+PL G+ P GL+E L + + +F+ Q+LD+ ++++KL +K LR
Sbjct: 1260 TSFATLVKLVPLEAGIPDPPGLSEKLLEGRDRERKFMSQMLDSRKVEEFKLPVAIKAELR 1319
Query: 1448 RYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDI---AERRASNSIEEIH-- 1502
YQQEG+NWLAFL R+ LHGILCDDMGLGKTLQ IVASD AE A E
Sbjct: 1320 PYQQEGVNWLAFLNRYNLHGILCDDMGLGKTLQTICIVASDHHMRAEDFAKTQRPESRKV 1379
Query: 1503 PSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVR 1562
PSLIICP +L GHW E++++ ++ + YVG +R L+ ++++TSYD+ R
Sbjct: 1380 PSLIICPPSLSGHWQQEVKQY--APFLNCVAYVGPPAERSKLQGSLADADIVVTSYDICR 1437
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
D D L + WNYC+LDEGH+IKN K+K+T+AVK++ + HRLILSGTPIQNN+ +LWSLF
Sbjct: 1438 NDNDVLRPISWNYCVLDEGHLIKNPKAKVTMAVKRINSNHRLILSGTPIQNNVLELWSLF 1497
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
DFLMPGFLGTE+ F + KP+ +R SK S+K+ EAG LA+EALHKQV+PFLLRR K+E
Sbjct: 1498 DFLMPGFLGTEKVFLDRFAKPIATSRFSK-SSKEQEAGALAIEALHKQVLPFLLRRLKEE 1556
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
VL+DLP KIIQ+ YCD S +Q KL+E F+ + K + + E ADK
Sbjct: 1557 VLNDLPPKIIQNYYCDPSELQKKLFEDFTKKEQKA-LQEKMGSSEKADK----------- 1604
Query: 1743 THVFQALQYLLKLCSHPLLVL--GDKSPESLLCHLSELFPGSSDIISELHKASSLSQISC 1800
H+FQALQY+ +LC+ P LV+ G K + +L E D+ S K S+L +
Sbjct: 1605 EHIFQALQYMRRLCNSPALVVKEGHKQYNEVQQYLQEKKSYLRDV-SHAPKLSALKDLLL 1663
Query: 1801 SSG 1803
G
Sbjct: 1664 DCG 1666
Score = 231 (86.4 bits), Expect = 2.4e-179, Sum P(3) = 2.4e-179
Identities = 85/283 (30%), Positives = 133/283 (46%)
Query: 5 SSRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVXX 64
+SRL+RL+TLL+TGS+ R TAA+Q+ ++ K HP +L +LL ++ YL+SKSWDTR
Sbjct: 2 TSRLDRLVTLLETGSSPLIRNTAAQQLADVQKQHPDELFNLLGRILPYLKSKSWDTRTAA 61
Query: 65 XXXXXXXXQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDL 124
N T + K E + + + P S + + DL
Sbjct: 62 AKAIGLIVANAD-TFDPNQDDGEDVKKDEEDVDDVNVKLEEEPI--SVADELLRLETLDL 118
Query: 125 NKVLEFGA-LLASGGQEYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKD 183
+L+ G LL SG ++ ++++ + + RL QK+ L RRLGL + D +D++ D
Sbjct: 119 VSILKRGRKLLGSGSKDQELSLA-AMDSAARLQHQKKLLTRRLGL--AGECSD-DDLLDD 174
Query: 184 EDLIVHKLNSHGNGFDRRFYTSASAH---NIQRLVSSMVPSVISKRP-SARELNMLKRKA 239
+L+ K R F +H + L S P+ + S R+LN LKRK+
Sbjct: 175 SELLP-KTPGLKEAEPRLFSPKEKSHLNSSAHPLPSPSEPANGEESGLSRRQLNQLKRKS 233
Query: 240 K-ISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKAD 281
K I+ +K D ++NVT P S P + D
Sbjct: 234 KHIARLGANKVRVVDLSSR-RQSENVTNPSISTPHPVKTEYGD 275
Score = 137 (53.3 bits), Expect = 2.4e-179, Sum P(3) = 2.4e-179
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 282 AVLDEDSSEHEGDGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMP 341
+++ D +E WP+ E L +D+FDP WEVRHG+ MALRE++ G+ AG
Sbjct: 313 SIIQPDLAEDTETIAWPYERMCEFLKVDIFDPNWEVRHGAAMALREVIRIQGSGAGRMHG 372
Query: 342 ELGPDG-ALNVEFKD 355
+ P+ LN ++ D
Sbjct: 373 KTRPENNVLNRQWLD 387
Score = 61 (26.5 bits), Expect = 2.5e-171, Sum P(3) = 2.5e-171
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 303 VEQLILDMFDPVWEVRHGSVMALREIL 329
+ Q LD PVWEV HG ++ LR ++
Sbjct: 445 IMQTDLDFDRPVWEVCHGGMIGLRYLV 471
Score = 56 (24.8 bits), Expect = 8.3e-171, Sum P(3) = 8.3e-171
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 563 PEWEIRHGSLLGIKYLVAVR 582
P WE+RHG+ + ++ ++ ++
Sbjct: 344 PNWEVRHGAAMALREVIRIQ 363
Score = 55 (24.4 bits), Expect = 5.9e-148, Sum P(2) = 5.9e-148
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 529 VRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVA 580
+R T AQ L K HP ++ L +L + W+ R + I +VA
Sbjct: 20 IRNTAAQQLADVQK-QHPDELFNLLGRILPYLKSKSWDTRTAAAKAIGLIVA 70
Score = 38 (18.4 bits), Expect = 5.3e-21, Sum P(3) = 5.3e-21
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 421 PAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGEKGDFLNSETLKNLPEN 480
PA + L+ +V E+ ++ +KEA D + R ++ G +N + P N
Sbjct: 922 PAQRITASKVLNETRVTAENAINF----AKEARDTRDMRIKAAAAGALINFGAIPKKPGN 977
Score = 37 (18.1 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 15/54 (27%), Positives = 20/54 (37%)
Query: 261 AQNVTTPKGSCGDPFNSNKADAVLDEDSSEHEGDGL---WPFRSFVEQLILDMF 311
A+N P G + D L E + D L W R + E+ LD F
Sbjct: 1845 AENAEKPTEIGGKEVDMVDIDGELKEKGKKGWLDDLGELWDDRQYQEEYNLDSF 1898
>UNIPROTKB|I3LTQ1 [details] [associations]
symbol:I3LTQ1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754
Ensembl:ENSSSCT00000027675 OMA:ISESSME Uniprot:I3LTQ1
Length = 1850
Score = 1020 (364.1 bits), Expect = 1.9e-168, Sum P(4) = 1.9e-168
Identities = 243/623 (39%), Positives = 350/623 (56%)
Query: 1196 DRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIE 1255
D ++ + RRG+E AL + FG + KLP LWD + L N +E
Sbjct: 1021 DEAQKPYLVQRRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTININNFDGKSLLE 1080
Query: 1256 SVRDP-QILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSM 1314
P Q L+N++Q+ + A +D L P L+ LP ++ C+ + +VR A+RC+ M
Sbjct: 1081 KGDGPAQELVNSLQVFETAAVSMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVM 1140
Query: 1315 AKSMTINVMAAVVENAIPMLGDMTSVHARQGA-GMLISLLVQGLGAEXXXXXXXXXXXXX 1373
+K T+ M +E +P LG + ++GA L +++ L
Sbjct: 1141 SKIATMETMNIFLEKVLPWLGAIDDNIKQEGAIEALACSVMEQLDVGIVPYIVLLVVPVL 1200
Query: 1374 RCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSR-NAEDAQFLEQLLDNSH 1432
MSD SVR T+ FA+L+ L+PL G+ P ++E L + A++ FLEQLLD
Sbjct: 1201 GRMSDQTDSVRFMATQCFATLIRLMPLEAGIPDPPNMSEELIQLKAKERHFLEQLLDGKK 1260
Query: 1433 IDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAER 1492
+++Y++ + LR Q+G+NWLAFL ++KLHGILCDDMGLGKTLQ+ I+A D R
Sbjct: 1261 LENYEIPVPINAELRXIFQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHR 1320
Query: 1493 R---ASNSIEEIHP--SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQ 1547
A + + E P SL++CP TL GHW E+ KF ++ L Y G +R++L
Sbjct: 1321 AQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERVSLDSH 1380
Query: 1548 FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILS 1607
+++ S VR+ + Q+ W I I+N K K + + ++ +L
Sbjct: 1381 GASFSMMGRSLSSVRRASGRGKQMGWCLRIHTYWESIQNGKCKEIIPIHKVTG----VLY 1436
Query: 1608 GTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL 1667
QNN+ +LWSLFDFLMPGFLGTERQF A YGKP++A+RD++ S+++ EAGVLAM+AL
Sbjct: 1437 ---FQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDAL 1493
Query: 1668 HKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
H+QV+PFLLRR K++VL DLP KIIQD YC LS +Q++LYE F+ S+AK ++ V
Sbjct: 1494 HRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVS--S 1551
Query: 1728 SADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDI-- 1785
+A E KA+ HVFQALQYL KLC+HP LVL + PE +L +S +
Sbjct: 1552 AALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPE-FKSTTEKLAVQNSSLHD 1610
Query: 1786 ISELHKASSLSQI--SCSSGDNG 1806
I K S+L Q+ C G NG
Sbjct: 1611 IQHAPKLSALKQLLLDCGLG-NG 1632
Score = 322 (118.4 bits), Expect = 1.9e-168, Sum P(4) = 1.9e-168
Identities = 107/344 (31%), Positives = 164/344 (47%)
Query: 7 RLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVXXXX 66
RL+RL LLDTG+T TR AA+Q+GE+ K HP +LN+LL KV YLRS +WDTR+
Sbjct: 5 RLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSTNWDTRIAAGQ 64
Query: 67 XXXXXXQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLNK 126
+NV E TK S + ED S ++F FD+ +
Sbjct: 65 AVEAIVKNVP-----EWNPVPRTKQETTSESAM-ED--------SSTTDRLNFDRFDICR 110
Query: 127 VLEFGA-LLASGGQEYDIAIDNSKNPRE---RLARQKQNLKRRLGLDVCEQFVDLN-DMI 181
+L+ GA LL S G E+++ + S R+ R + + +R L ++ D++
Sbjct: 111 LLQHGASLLGSAGAEFEVQDEKSVGEGSIWGRVTRHCKVVPKRFRLCNFTNLAGVSMDIM 170
Query: 182 KDE-DLIVHKLNSHGNGFDRRFYTSASAHNI-QRLVSSMVPSVISKRPSARELNMLKRKA 239
++ L K H + +H+I Q ++S K+ ++ +L+ K
Sbjct: 171 RNHLPLSRDKSQCHFCLKNTTLEEQELSHSIFQSGLNSSHSHKAKKKKWLAKITLLREKX 230
Query: 240 -KISSKDQSKSWSEDGDMEVPHAQ--NVTTPKGSCGDPFNSNKADAVLDE--DSSEH-EG 293
+ K + ++ S DG+ E + NV + ++N + ++D DSS E
Sbjct: 231 LAVERKKKRRNDSTDGEPEEKRRKIANVVINQ-------SANDSKVLIDNIPDSSPLIEE 283
Query: 294 DGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAG 337
WP SF E+L D+F+P WEVRHG+ LREIL HG S G
Sbjct: 284 TNEWPLESFCEELCNDLFNPSWEVRHGAGTGLREILKAHGKSGG 327
Score = 311 (114.5 bits), Expect = 1.9e-168, Sum P(4) = 1.9e-168
Identities = 65/174 (37%), Positives = 101/174 (58%)
Query: 495 QKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLY 554
Q++ E+L+D IR LC+ +LDRFGD+VSD+VVAPVRETCAQ LG K+M+ + V++T+
Sbjct: 339 QQHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKHMNETGVHKTVD 398
Query: 555 ILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPXXXXXXXXXX 614
+LL++ + +WE+RHG LLGIKY +AVRQ++++ LL VL GL+D
Sbjct: 399 VLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKVLTRIIEGLQDLDDDVRAVAAA 458
Query: 615 XXXXXXXXXXXXDGQTLHSIVMXXXXXXXXXXXXSPSTSSVMNLLAEIYSQEEM 668
+ I+ + ST+S+M LL+ + + ++
Sbjct: 459 SLVPVVESLVYLQTPKVPFIINTLWDALLELDDLTASTNSIMTLLSSLLTYPQV 512
Score = 173 (66.0 bits), Expect = 1.9e-168, Sum P(4) = 1.9e-168
Identities = 74/339 (21%), Positives = 133/339 (39%)
Query: 823 MFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSV--KITVGSDLEMS 880
M P LP + K RA + + G V R G + + V + G+D M
Sbjct: 621 MMQPSHLPIDLNMLLEVKARA---KEKTGGKV-----RQGQSQSKEVLQEYIAGADTIME 672
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
TR + A+KL + DP N +T + ++ + +
Sbjct: 673 DPATRDFVVMRARMMAAKLLGALCCCICDPGVNVVTQEIKPAESLGQLLLFHLNSKSALQ 732
Query: 941 ELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRA 1000
+ A V+ K+ LA L Y E++ + +M+NE QL+ +
Sbjct: 733 RI-SVALVICEWAALQKECRAVTLAVQPRLLDILSEHLYYDEIAVPFTRMQNECKQLISS 791
Query: 1001 METSSMFTEMLSANEIDVESLSADNAISFASKL-QLLGSNSDGSESLSRQMLDDIESIKQ 1059
+ + + E+ N ++ + D A + + + S+ D + + +Q+ + ++
Sbjct: 792 LADAHI--EV--GNRVNSNVFTIDQANDLVTTVFNEVTSSFDLNPPVLQQLDSKRQQVQM 847
Query: 1060 RMLTTSGYLKCVQSNLHXXXXXXXXXXXXWMSELPARLNPIILPLMASIKRXXXXXXXXX 1119
+ T+ + +Q +H + +LP +LNPII PLM +IK+
Sbjct: 848 TVTETNQEWQVLQLRVHTFAACAVVS----LQQLPEKLNPIIKPLMETIKKEENTLVQNY 903
Query: 1120 XXXXXXXXIADCIARKPSPNDKLIKNICSLTSMDPCETP 1158
+ C AR P PN K++KN+CS +DP TP
Sbjct: 904 AAQCIAKLLQQCTARTPCPNSKIVKNLCSSLCVDPYLTP 942
Score = 126 (49.4 bits), Expect = 1.7e-163, Sum P(4) = 1.7e-163
Identities = 73/269 (27%), Positives = 115/269 (42%)
Query: 703 YMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLR 762
Y+ S++ P F+ H I ++R + RL+ + ++ + S W IL D LR
Sbjct: 523 YLQSVVFPF---FLEHEIRTLRQT------RLVSFVSQSKTSDQNSSS-WLIPILPDMLR 572
Query: 763 IVFQNLLLESNEEILQCSDRVW-RLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDAT 821
+FQ +LES++EIL +VW LL ++ V+ + AA +M +W+ L P S L
Sbjct: 573 HIFQFCVLESSQEILDLIHKVWMELLSKASVQYVVAAACPWMGAWLCLMMQP--SHL--- 627
Query: 822 KMFWPVALPRKSHFKAAAKMRAV-KLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMS 880
P+ L KA AK + K+ S S ++ QE T + + +
Sbjct: 628 ----PIDLNMLLEVKARAKEKTGGKVRQGQSQSKEVLQEYIAGADTI---MEDPATRDFV 680
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFV---IDP-------LWNALTSFSGVQRQVAAMVF 930
V R++ A LG + + + V I P L L S S +QR A+V
Sbjct: 681 VMRARMMAAKLLGALCCCICDPGVNVVTQEIKPAESLGQLLLFHLNSKSALQRISVALVI 740
Query: 931 ISWF---KEIKSEELPGSAAVLPNLPGHL 956
W KE ++ L +L L HL
Sbjct: 741 CEWAALQKECRAVTLAVQPRLLDILSEHL 769
Score = 60 (26.2 bits), Expect = 5.7e-113, Sum P(3) = 5.7e-113
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 510 CILSLDRFGDYVSDQVVAPV-RETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIR 568
C LDR + D PV R+ AQ LG K +HP + L +L R W+ R
Sbjct: 2 CFFRLDRLF-ILLDTGTTPVTRKAAAQQLGEVVK-LHPHELNNLLSKVLIYLRSTNWDTR 59
Score = 52 (23.4 bits), Expect = 3.3e-141, Sum P(4) = 3.3e-141
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 563 PEWEIRHGSLLGIKYLV 579
P WE+RHG+ G++ ++
Sbjct: 303 PSWEVRHGAGTGLREIL 319
Score = 49 (22.3 bits), Expect = 6.8e-141, Sum P(4) = 6.8e-141
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 303 VEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPEL 343
V+ L+ + WEVRHG ++ ++ L +P++
Sbjct: 397 VDVLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKV 437
Score = 49 (22.3 bits), Expect = 6.5e-50, Sum P(3) = 6.5e-50
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 697 DFQANPYMLSMLAPRLWPFMRHSITSVRHSAIR 729
D + +P ++ L P L+ +++ T+VRH A R
Sbjct: 1104 DSELHPLLVQHL-PHLYMCLQYPSTAVRHMAAR 1135
Score = 47 (21.6 bits), Expect = 2.8e-127, Sum P(3) = 2.8e-127
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 318 RHGSVMALREILTHHGASAGVFMPEL-----GP-DGALNVEFKDKDSITMK 362
R G+ AL I+ H G V +P L GP +N+ D S+ K
Sbjct: 1031 RRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTININNFDGKSLLEK 1081
Score = 42 (19.8 bits), Expect = 1.9e-127, Sum P(4) = 1.9e-127
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 886 VVTASALGIFASK--LHEGSIQFVIDPLWNAL 915
V AS + + S L + F+I+ LW+AL
Sbjct: 455 VAAASLVPVVESLVYLQTPKVPFIINTLWDAL 486
Score = 42 (19.8 bits), Expect = 1.9e-127, Sum P(4) = 1.9e-127
Identities = 22/102 (21%), Positives = 39/102 (38%)
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
V R A LG+ ++E + +D L LT R ++ I + ++ +
Sbjct: 370 VAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRH-GGLLGIKYALAVRQD 428
Query: 941 ELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAE 982
+ +LP + + + L DL D SL+P E
Sbjct: 429 VIN---TLLPKVLTRIIEGLQDL--DDDVRAVAAASLVPVVE 465
Score = 37 (18.1 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 1770 SLLCHLSELFPGSSDIISELHKASSLSQI 1798
+L C + + PG + + E+ A SL Q+
Sbjct: 694 ALCCCICD--PGVNVVTQEIKPAESLGQL 720
>UNIPROTKB|I3LD21 [details] [associations]
symbol:I3LD21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754
Ensembl:ENSSSCT00000029375 Uniprot:I3LD21
Length = 1845
Score = 1020 (364.1 bits), Expect = 2.4e-168, Sum P(4) = 2.4e-168
Identities = 243/623 (39%), Positives = 350/623 (56%)
Query: 1196 DRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIE 1255
D ++ + RRG+E AL + FG + KLP LWD + L N +E
Sbjct: 1016 DEAQKPYLVQRRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTININNFDGKSLLE 1075
Query: 1256 SVRDP-QILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSM 1314
P Q L+N++Q+ + A +D L P L+ LP ++ C+ + +VR A+RC+ M
Sbjct: 1076 KGDGPAQELVNSLQVFETAAVSMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARCVGVM 1135
Query: 1315 AKSMTINVMAAVVENAIPMLGDMTSVHARQGA-GMLISLLVQGLGAEXXXXXXXXXXXXX 1373
+K T+ M +E +P LG + ++GA L +++ L
Sbjct: 1136 SKIATMETMNIFLEKVLPWLGAIDDNIKQEGAIEALACSVMEQLDVGIVPYIVLLVVPVL 1195
Query: 1374 RCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSR-NAEDAQFLEQLLDNSH 1432
MSD SVR T+ FA+L+ L+PL G+ P ++E L + A++ FLEQLLD
Sbjct: 1196 GRMSDQTDSVRFMATQCFATLIRLMPLEAGIPDPPNMSEELIQLKAKERHFLEQLLDGKK 1255
Query: 1433 IDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAER 1492
+++Y++ + LR Q+G+NWLAFL ++KLHGILCDDMGLGKTLQ+ I+A D R
Sbjct: 1256 LENYEIPVPINAELRXIFQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHR 1315
Query: 1493 R---ASNSIEEIHP--SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQ 1547
A + + E P SL++CP TL GHW E+ KF ++ L Y G +R++L
Sbjct: 1316 AQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERVSLDSH 1375
Query: 1548 FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILS 1607
+++ S VR+ + Q+ W I I+N K K + + ++ +L
Sbjct: 1376 GASFSMMGRSLSSVRRASGRGKQMGWCLRIHTYWESIQNGKCKEIIPIHKVTG----VLY 1431
Query: 1608 GTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL 1667
QNN+ +LWSLFDFLMPGFLGTERQF A YGKP++A+RD++ S+++ EAGVLAM+AL
Sbjct: 1432 ---FQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDAL 1488
Query: 1668 HKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
H+QV+PFLLRR K++VL DLP KIIQD YC LS +Q++LYE F+ S+AK ++ V
Sbjct: 1489 HRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVS--S 1546
Query: 1728 SADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDI-- 1785
+A E KA+ HVFQALQYL KLC+HP LVL + PE +L +S +
Sbjct: 1547 AALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPE-FKSTTEKLAVQNSSLHD 1605
Query: 1786 ISELHKASSLSQI--SCSSGDNG 1806
I K S+L Q+ C G NG
Sbjct: 1606 IQHAPKLSALKQLLLDCGLG-NG 1627
Score = 321 (118.1 bits), Expect = 2.4e-168, Sum P(4) = 2.4e-168
Identities = 107/343 (31%), Positives = 166/343 (48%)
Query: 7 RLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVXXXX 66
RL+RL LLDTG+T TR AA+Q+GE+ K HP +LN+LL KV YLRS +WDTR+
Sbjct: 5 RLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSTNWDTRIAAGQ 64
Query: 67 XXXXXXQNVKLTTLKELFSCVETKMSEVGISGIVEDMVAWPNFHSKIVASVSFTSFDLNK 126
+NV E TK S + ED S ++F FD+ +
Sbjct: 65 AVEAIVKNVP-----EWNPVPRTKQETTSESAM-ED--------SSTTDRLNFDRFDICR 110
Query: 127 VLEFGA-LLASGGQEYDIAIDNSKNP--RERLARQKQNLKRRLGLDVCEQFVD-LNDMIK 182
+L+ GA LL S G E+++ + S + R++ +K++ ++ + + M +
Sbjct: 111 LLQHGASLLGSAGAEFEVQDEKSVGEILKSRISTDCALIKKKRSTNIFTLLGNKVYGMFR 170
Query: 183 DED--LIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKA- 239
D + +IV ++ G + Y +N SS K+ A+ + +L+ K
Sbjct: 171 DLECGIIVKRVVLIGKNSGQ--Y-HCPLYNSTFCCSSHSHKAKKKKWLAK-ITLLREKXL 226
Query: 240 KISSKDQSKSWSEDGDMEVPHAQ--NVTTPKGSCGDPFNSNKADAVLDE--DSSEH-EGD 294
+ K + ++ S DG+ E + NV + ++N + ++D DSS E
Sbjct: 227 AVERKKKRRNDSTDGEPEEKRRKIANVVINQ-------SANDSKVLIDNIPDSSPLIEET 279
Query: 295 GLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAG 337
WP SF E+L D+F+P WEVRHG+ LREIL HG S G
Sbjct: 280 NEWPLESFCEELCNDLFNPSWEVRHGAGTGLREILKAHGKSGG 322
Score = 311 (114.5 bits), Expect = 2.4e-168, Sum P(4) = 2.4e-168
Identities = 65/174 (37%), Positives = 101/174 (58%)
Query: 495 QKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLY 554
Q++ E+L+D IR LC+ +LDRFGD+VSD+VVAPVRETCAQ LG K+M+ + V++T+
Sbjct: 334 QQHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKHMNETGVHKTVD 393
Query: 555 ILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPXXXXXXXXXX 614
+LL++ + +WE+RHG LLGIKY +AVRQ++++ LL VL GL+D
Sbjct: 394 VLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKVLTRIIEGLQDLDDDVRAVAAA 453
Query: 615 XXXXXXXXXXXXDGQTLHSIVMXXXXXXXXXXXXSPSTSSVMNLLAEIYSQEEM 668
+ I+ + ST+S+M LL+ + + ++
Sbjct: 454 SLVPVVESLVYLQTPKVPFIINTLWDALLELDDLTASTNSIMTLLSSLLTYPQV 507
Score = 173 (66.0 bits), Expect = 2.4e-168, Sum P(4) = 2.4e-168
Identities = 74/339 (21%), Positives = 133/339 (39%)
Query: 823 MFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSV--KITVGSDLEMS 880
M P LP + K RA + + G V R G + + V + G+D M
Sbjct: 616 MMQPSHLPIDLNMLLEVKARA---KEKTGGKV-----RQGQSQSKEVLQEYIAGADTIME 667
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
TR + A+KL + DP N +T + ++ + +
Sbjct: 668 DPATRDFVVMRARMMAAKLLGALCCCICDPGVNVVTQEIKPAESLGQLLLFHLNSKSALQ 727
Query: 941 ELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRA 1000
+ A V+ K+ LA L Y E++ + +M+NE QL+ +
Sbjct: 728 RI-SVALVICEWAALQKECRAVTLAVQPRLLDILSEHLYYDEIAVPFTRMQNECKQLISS 786
Query: 1001 METSSMFTEMLSANEIDVESLSADNAISFASKL-QLLGSNSDGSESLSRQMLDDIESIKQ 1059
+ + + E+ N ++ + D A + + + S+ D + + +Q+ + ++
Sbjct: 787 LADAHI--EV--GNRVNSNVFTIDQANDLVTTVFNEVTSSFDLNPPVLQQLDSKRQQVQM 842
Query: 1060 RMLTTSGYLKCVQSNLHXXXXXXXXXXXXWMSELPARLNPIILPLMASIKRXXXXXXXXX 1119
+ T+ + +Q +H + +LP +LNPII PLM +IK+
Sbjct: 843 TVTETNQEWQVLQLRVHTFAACAVVS----LQQLPEKLNPIIKPLMETIKKEENTLVQNY 898
Query: 1120 XXXXXXXXIADCIARKPSPNDKLIKNICSLTSMDPCETP 1158
+ C AR P PN K++KN+CS +DP TP
Sbjct: 899 AAQCIAKLLQQCTARTPCPNSKIVKNLCSSLCVDPYLTP 937
Score = 125 (49.1 bits), Expect = 2.6e-163, Sum P(4) = 2.6e-163
Identities = 70/245 (28%), Positives = 102/245 (41%)
Query: 728 IRTLERL-LEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVW-R 785
IRTL + LE + S W IL D LR +FQ +LES++EIL +VW
Sbjct: 532 IRTLRQTRLENCKTCFCKQDDNSSSWLIPILPDMLRHIFQFCVLESSQEILDLIHKVWME 591
Query: 786 LLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAV- 844
LL ++ V+ + AA +M +W+ L P S L P+ L KA AK +
Sbjct: 592 LLSKASVQYVVAAACPWMGAWLCLMMQP--SHL-------PIDLNMLLEVKARAKEKTGG 642
Query: 845 KLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNTRVVTASALGIFASKLHEGSI 904
K+ S S ++ QE T + + + V R++ A LG + + +
Sbjct: 643 KVRQGQSQSKEVLQEYIAGADTI---MEDPATRDFVVMRARMMAAKLLGALCCCICDPGV 699
Query: 905 QFV---IDP-------LWNALTSFSGVQRQVAAMVFISWF---KEIKSEELPGSAAVLPN 951
V I P L L S S +QR A+V W KE ++ L +L
Sbjct: 700 NVVTQEIKPAESLGQLLLFHLNSKSALQRISVALVICEWAALQKECRAVTLAVQPRLLDI 759
Query: 952 LPGHL 956
L HL
Sbjct: 760 LSEHL 764
Score = 60 (26.2 bits), Expect = 5.5e-113, Sum P(3) = 5.5e-113
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 510 CILSLDRFGDYVSDQVVAPV-RETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIR 568
C LDR + D PV R+ AQ LG K +HP + L +L R W+ R
Sbjct: 2 CFFRLDRLF-ILLDTGTTPVTRKAAAQQLGEVVK-LHPHELNNLLSKVLIYLRSTNWDTR 59
Score = 52 (23.4 bits), Expect = 4.0e-141, Sum P(4) = 4.0e-141
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 563 PEWEIRHGSLLGIKYLV 579
P WE+RHG+ G++ ++
Sbjct: 298 PSWEVRHGAGTGLREIL 314
Score = 49 (22.3 bits), Expect = 8.3e-141, Sum P(4) = 8.3e-141
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 303 VEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPEL 343
V+ L+ + WEVRHG ++ ++ L +P++
Sbjct: 392 VDVLLKLLTQEQWEVRHGGLLGIKYALAVRQDVINTLLPKV 432
Score = 49 (22.3 bits), Expect = 8.2e-50, Sum P(3) = 8.2e-50
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 697 DFQANPYMLSMLAPRLWPFMRHSITSVRHSAIR 729
D + +P ++ L P L+ +++ T+VRH A R
Sbjct: 1099 DSELHPLLVQHL-PHLYMCLQYPSTAVRHMAAR 1130
Score = 47 (21.6 bits), Expect = 3.4e-127, Sum P(3) = 3.4e-127
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 318 RHGSVMALREILTHHGASAGVFMPEL-----GP-DGALNVEFKDKDSITMK 362
R G+ AL I+ H G V +P L GP +N+ D S+ K
Sbjct: 1026 RRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTININNFDGKSLLEK 1076
Score = 42 (19.8 bits), Expect = 2.3e-127, Sum P(4) = 2.3e-127
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 886 VVTASALGIFASK--LHEGSIQFVIDPLWNAL 915
V AS + + S L + F+I+ LW+AL
Sbjct: 450 VAAASLVPVVESLVYLQTPKVPFIINTLWDAL 481
Score = 42 (19.8 bits), Expect = 2.3e-127, Sum P(4) = 2.3e-127
Identities = 22/102 (21%), Positives = 39/102 (38%)
Query: 881 VTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
V R A LG+ ++E + +D L LT R ++ I + ++ +
Sbjct: 365 VAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRH-GGLLGIKYALAVRQD 423
Query: 941 ELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAE 982
+ +LP + + + L DL D SL+P E
Sbjct: 424 VIN---TLLPKVLTRIIEGLQDL--DDDVRAVAAASLVPVVE 460
Score = 37 (18.1 bits), Expect = 1.5e-48, Sum P(3) = 1.5e-48
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 1770 SLLCHLSELFPGSSDIISELHKASSLSQI 1798
+L C + + PG + + E+ A SL Q+
Sbjct: 689 ALCCCICD--PGVNVVTQEIKPAESLGQL 715
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 1266 (450.7 bits), Expect = 5.9e-167, Sum P(3) = 5.9e-167
Identities = 293/740 (39%), Positives = 428/740 (57%)
Query: 1092 ELPARLNPIILPLMASIKRXXXXXXXXXXXXXXXXXIADCIARKPSP-NDKLIKNICSLT 1150
+LP +LN II +M SIK+ I+ C ++K+++N+C+
Sbjct: 991 KLPKKLNSIIKGIMESIKKEQFSCLQMHSASAMMKLISACYKESRQVISEKIVRNLCAYV 1050
Query: 1151 SMDPCETPQAAAMGSMEII--------DDQDFLSFGS----STGKQKSRAHMLAGGEDRS 1198
MD ETP G I+ DD D G S R L+ D+
Sbjct: 1051 CMDTTETPIFHDSGKNGILSLHSIGTSDDNDEQVSGKLVDDSDDVSNDRKSSLSSVSDKD 1110
Query: 1199 RVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSN-KKKIILAIESV 1257
+ R G++L L+ + FG SLF ++P L CL L S ++ A +V
Sbjct: 1111 AA--VLQRMGAQLTLQQMAQNFGSSLFSRVPVLSQCLFVPLQQYAESGFPSEVDQASCTV 1168
Query: 1258 RDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKS 1317
Q L++ + ++R + LD L+ ++++ LP + + ++ +VR AS+C ++ +S
Sbjct: 1169 G--QDLLDAMSILRFLVAYLDSGLQSEIVSTLPHLLATLQSNYSAVRNMASKCFAAITES 1226
Query: 1318 MTINVMAA--VVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAEXXXXXXXXXXXXXRC 1375
A +VE+ +P+LGD +S RQGA I +VQ LG
Sbjct: 1227 NAAGSKALHLLVEDVVPLLGDASSTIHRQGAIECIYHVVQRLGVRILPYILYLIIPLLGR 1286
Query: 1376 MSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSRNAE-DAQFLEQLLDNSHID 1434
MSD DQ VR T SFA+LV L+PL G+ P L + L + E + +FLEQ+L+ S ++
Sbjct: 1287 MSDADQDVRVLATTSFATLVKLVPLEAGLPDPPDLPQYLLDSREKERKFLEQMLNPSKVE 1346
Query: 1435 DYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRA 1494
+ + + LR+YQQEG+NWLAFL +++LHGILCDDMGLGKTLQ IVASD R+
Sbjct: 1347 AFSIPVPISADLRKYQQEGVNWLAFLNKYELHGILCDDMGLGKTLQTICIVASDHYNRQK 1406
Query: 1495 ----SNSIEEIH-PSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD 1549
S S + H PSLI+CPSTL GHW E+ + +S YVG +R +R +
Sbjct: 1407 LFEESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSA--YVGPPAERAKIRSKMK 1464
Query: 1550 KHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
K +V++TSYD+ R D D L ++ WNYC+LDEGH+IKN+++K+T AVK L++ HRLILSGT
Sbjct: 1465 KSDVVVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGT 1524
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
PIQNN+ +LWSLFDFLMPGFLGTE+ FQ + +P+ A+RD+K S+K+ E G LA+EA+HK
Sbjct: 1525 PIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHK 1584
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESA 1729
QV+PF+LRR K++VL+DLP KIIQD YCD+S +Q KL F SQ I+ ++ DE+
Sbjct: 1585 QVLPFMLRRLKEDVLADLPPKIIQDYYCDMSDLQRKLLNDFV-SQLN--INEELEDDET- 1640
Query: 1730 DKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPE--SLLCHLSELFPGSSDIIS 1787
+K +G H+FQALQY+ KLC+HP L+L +K P+ +++ L++ G D+
Sbjct: 1641 EKTQGTRKKKSQKAHIFQALQYMRKLCNHPALILTEKHPKRNAIVKQLAKENSGLHDL-K 1699
Query: 1788 ELHKASSLSQI--SCSSGDN 1805
K ++L Q+ C G++
Sbjct: 1700 HAPKLTALGQLLRDCGLGNS 1719
Score = 246 (91.7 bits), Expect = 2.5e-49, Sum P(3) = 2.5e-49
Identities = 143/651 (21%), Positives = 251/651 (38%)
Query: 703 YMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLR 762
+ L PRL+ MR+++T VR S + L + + ++S S+I G TLR
Sbjct: 609 FSFETLVPRLFHLMRYTLTGVRRSVVYALTKFISV-------QTSC-----SWITGLTLR 656
Query: 763 IVFQNLLLESNEEILQCS----DRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGS-- 816
+ FQN+LLE E+I + S RV +L + E + ++++ TP GS
Sbjct: 657 LCFQNVLLEQQEDISKSSCELAQRVMDILYRDGPESFSKLLYSHIEPMLKVSITPIGSFR 716
Query: 817 ---SLDATKMFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITV 873
LD T + P P +L N S + G + + +
Sbjct: 717 RPYPLDTTLIVKPSGQPYAPSTSRERNNNISELSN-SRTKHRAKDDPKGSFCFSVDEPML 775
Query: 874 GSDLEM----SVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNA-LTSFSGVQRQVAAM 928
D+E + R+ +S LG + I P A LTS + +
Sbjct: 776 NGDVEFVGEERMLKARLRASSLLGRIIGRWKRDEILLFFKPFLQACLTSSFSTPVVLGSR 835
Query: 929 VFISWFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYG 988
+ S+F E++ +L + + HL L D A T P ++ YA L
Sbjct: 836 LIESFF-EVEDNDL----TIQKDELYHL---LCDQFA----TVPREN----YANLVSQLH 879
Query: 989 KMRNEASQLLRA-METSSMFTEMLSANEIDVESLSADNAISF--ASKLQLLGSNSDG--- 1042
+R + + LL ++ + + + + V+ I+F A +L+G +
Sbjct: 880 VVRAQCNALLNTFLDVGRLSRSKIPSLAVVVKGDPEAGPIAFGIADAEKLVGPTYENLCK 939
Query: 1043 --SESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHXXXXXXXXXXXXWMSELPARLNPI 1100
S S Q + IK ++ K + +LP +LN I
Sbjct: 940 LLSPSQKAQSSKALNEIKYLIIDEISIYKIAKERQDIQCSASIASAMVTYDKLPKKLNSI 999
Query: 1101 ILPLMASIKRXXXXXXXXXXXXXXXXXIADCIARKPSP-NDKLIKNICSLTSMDPCETPQ 1159
I +M SIK+ I+ C ++K+++N+C+ MD ETP
Sbjct: 1000 IKGIMESIKKEQFSCLQMHSASAMMKLISACYKESRQVISEKIVRNLCAYVCMDTTETPI 1059
Query: 1160 AAAMGSMEIIDDQDFLSFGSSTGKQKSRAHMLAGGED------RSRVEGF-------ISR 1206
G I+ S G+S + + L D +S + + R
Sbjct: 1060 FHDSGKNGILS---LHSIGTSDDNDEQVSGKLVDDSDDVSNDRKSSLSSVSDKDAAVLQR 1116
Query: 1207 RGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINN 1266
G++L L+ + FG SLF ++P L CL L S + S Q L++
Sbjct: 1117 MGAQLTLQQMAQNFGSSLFSRVPVLSQCLFVPLQQYAESGFPSEVDQA-SCTVGQDLLDA 1175
Query: 1267 IQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKS 1317
+ ++R + LD L+ ++++ LP + + ++ +VR AS+C ++ +S
Sbjct: 1176 MSILRFLVAYLDSGLQSEIVSTLPHLLATLQSNYSAVRNMASKCFAAITES 1226
Score = 228 (85.3 bits), Expect = 5.9e-167, Sum P(3) = 5.9e-167
Identities = 77/238 (32%), Positives = 116/238 (48%)
Query: 117 VSFTSFDLNKVLEFGA-LLASGGQEYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQFV 175
+SF SFD+ VL+ G LL S ++YD+ N N +Q NLK RL D+ +++
Sbjct: 176 LSFESFDIANVLKAGKKLLGSASRDYDV---NPANYSTHYLQQLSNLKSRL--DLAGEYL 230
Query: 176 DLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAH----NIQRLVSSMVPSVISKRPSARE 231
D D I ++ + + S+ G TS H N + + PS + SAR+
Sbjct: 231 D--DSIMND--LGDNVGSNSKGSPT---TSIPEHKTSINNNKPEDTPTPSE-NVHLSARQ 282
Query: 232 LNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGS-CGDPFN---SNKADAVLDED 287
N LKRKA+ K+ K D + H QN T+ G +N +++D ++ E
Sbjct: 283 RNALKRKAR-QMKNSQKVRVIDVAPTLVHQQNSTSSADKKTGADYNFTAQSRSDRLVVEH 341
Query: 288 SSEH--------EGDGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAG 337
+ D +WPF + VE L++DMFDP WE+RHG+ M LREI+ + G G
Sbjct: 342 KAPIVPSAAVAVTSDSVWPFETLVELLLIDMFDPSWEIRHGACMGLREIIRYAGFGYG 399
Score = 205 (77.2 bits), Expect = 5.9e-167, Sum P(3) = 5.9e-167
Identities = 72/255 (28%), Positives = 111/255 (43%)
Query: 495 QKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYM-HPSL--VYE 551
Q N ++ D R C+ +LDRFGDY++DQVVAP+RE+ +Q LG A Y+ + S+ +Y+
Sbjct: 411 QLNKKYFDDLLCRIACVFALDRFGDYLADQVVAPIRESVSQVLGVALIYVPNDSVFSMYK 470
Query: 552 TLYILLQMQR----RPEWEIRHGSLLGIKYLVAVR-------QEMLHGLLGYVLPACRAG 600
L+ L+ WE HG +LGIKYLVAV+ + L L+ V+ A
Sbjct: 471 VLHSLVFQNELGLTNTVWEAAHGGMLGIKYLVAVKYPLFFSHSDYLDSLINTVIHGL-AN 529
Query: 601 LEDPXXXXXXXXXXXXXXXXXXXXXXDGQTLHSIVMXXXXXXXXXXXXSPSTSSVMNLLA 660
+D + L ++ S STS VM+LL+
Sbjct: 530 HDDDVRAVSALTLLPIADKLVQEKLSSCKNLLKVLWDCLDDVKDDL--SSSTSCVMDLLS 587
Query: 661 EIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSI 720
+ S E++ M E +D + L PRL+ MR+++
Sbjct: 588 SLCSFTEVMNLM-----------QETANSDP----------EFSFETLVPRLFHLMRYTL 626
Query: 721 TSVRHSAIRTLERLL 735
T VR S + L + +
Sbjct: 627 TGVRRSVVYALTKFI 641
Score = 186 (70.5 bits), Expect = 1.6e-162, Sum P(3) = 1.6e-162
Identities = 67/222 (30%), Positives = 108/222 (48%)
Query: 5 SSRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVXX 64
++RL+RL+ LLD+GST R TAA+QIG+I K HP +L +LL +V YL+SK+WDTRV
Sbjct: 2 TTRLDRLVVLLDSGSTSVVRETAAKQIGDIQKVHPDELYNLLGRVVPYLKSKNWDTRVAA 61
Query: 65 XXXXXXXXQNVKLTTLKELFSCVETKMSEV-GISGIVEDMV-------AWPNFHSKIVAS 116
+NV + + + ++ +G E+ A + S++V S
Sbjct: 62 AKAIGGIVENVPVWNPNRTSPVKKEETEDLPSFNGDTEEKPFIKTEEGAPASSQSQVVVS 121
Query: 117 VSFTS-FDLNKVLEFGALLASGGQEYDIAIDNSKNPRERLARQ-KQNLKRRL--GLDVCE 172
+ TS +++K+ E S QE +D P E A++ LK + L E
Sbjct: 122 SNLTSNSEVSKLEEERLSTRSHSQEIKPIVDFG--PDEETAKELNTELKGKFENSLLSFE 179
Query: 173 QFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRL 214
F D+ +++K + L S +D + S H +Q+L
Sbjct: 180 SF-DIANVLKAGKKL---LGSASRDYDVN-PANYSTHYLQQL 216
Score = 69 (29.3 bits), Expect = 3.5e-148, Sum P(3) = 3.5e-148
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 550 YETLYILLQMQR-RPEWEIRHGSLLGIKYLV 579
+ETL LL + P WEIRHG+ +G++ ++
Sbjct: 361 FETLVELLLIDMFDPSWEIRHGACMGLREII 391
Score = 58 (25.5 bits), Expect = 2.6e-130, Sum P(2) = 2.6e-130
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 514 LDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIR 568
LDR + + VRET A+ +G K +HP +Y L ++ + W+ R
Sbjct: 5 LDRLVVLLDSGSTSVVRETAAKQIGDIQK-VHPDELYNLLGRVVPYLKSKNWDTR 58
Score = 49 (22.3 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 1228 LPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLD-EALKPKLL 1286
L LWDCL +V D S+ ++ + S+ ++N +Q + P E L P+L
Sbjct: 561 LKVLWDCLDDVK-DDLSSSTSCVMDLLSSLCSFTEVMNLMQETANSDPEFSFETLVPRLF 619
Query: 1287 TLL 1289
L+
Sbjct: 620 HLM 622
Score = 48 (22.0 bits), Expect = 2.3e-147, Sum P(4) = 2.3e-147
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 301 SFVEQLILDMFDPVWEVRHGSVMALREIL 329
S V Q L + + VWE HG ++ ++ ++
Sbjct: 474 SLVFQNELGLTNTVWEAAHGGMLGIKYLV 502
Score = 44 (20.5 bits), Expect = 2.8e-28, Sum P(3) = 2.8e-28
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 976 SLLPY--AELSRTYGKMRNEASQLLRAM-ETSSMFTEMLSANEIDVESLSAD 1024
S LP+ A L Y +RN AS+ A+ E+++ ++ L DV L D
Sbjct: 1196 STLPHLLATLQSNYSAVRNMASKCFAAITESNAAGSKALHLLVEDVVPLLGD 1247
Score = 38 (18.4 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 20/89 (22%), Positives = 38/89 (42%)
Query: 395 MDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSV-KVEPESNLD-GLSHPSKEA 452
M+ + VN +S D +L + + Q + ++ K E E GLS SK+A
Sbjct: 1864 MNVASTVVNQQNAGLSSIGTDQILDLFNTTADEQQTVQNIDKEESEDAAGRGLSGTSKKA 1923
Query: 453 IDILEPRGQSGEKGDFLNSETLKNLPENS 481
++ L + +F + LP+++
Sbjct: 1924 LEGLPEMWDESQYDEFNLDGFISTLPKDA 1952
Score = 37 (18.1 bits), Expect = 3.1e-149, Sum P(3) = 3.1e-149
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 517 FGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILL 557
FG ++++V P E + L + K + E Y+++
Sbjct: 921 FGIADAEKLVGPTYENLCKLLSPSQKAQSSKALNEIKYLII 961
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 1322 (470.4 bits), Expect = 2.6e-156, Sum P(4) = 2.6e-156
Identities = 377/1187 (31%), Positives = 593/1187 (49%)
Query: 653 SSVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQ-ANPYMLSMLAPR 711
+++ +LLA + ++ I VG+ L + D+ + + + + + L P+
Sbjct: 493 TTIWSLLARL---DDDISSSVGSIMDLLAKLCDHQEVLDILKNKALEHPSEWSFKSLVPK 549
Query: 712 LWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLE 771
L+PF+RHSI+SVR + + L L I + S + W + G R+VFQN+LLE
Sbjct: 550 LYPFLRHSISSVRRAVLNLLIAFLS------IKDDSTKN-W---LNGKVFRLVFQNILLE 599
Query: 772 SNEEILQCSDRVWRLL-----VQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWP 826
N E+LQ S V+ L V+ + L+ K + + L TP G M
Sbjct: 600 QNPELLQLSFDVYVALLEHYKVKHTEKTLDHVFSKHLQPILHLLNTPVGEKGKNYAMESQ 659
Query: 827 VALPRKSHFKA-AAKMRAVKLENDSSGSVDLPQER---NGDTSTNSVKITV-GSDLEMSV 881
L H++ K R++ E + + +P+ N D + IT+ G D+ +
Sbjct: 660 YILKPSQHYQLHPEKKRSIS-ETTTDSDIPIPKNNEHINIDAPMIAGDITLLGLDV---I 715
Query: 882 TNTRVVTASALGIFASKLHEGSIQ-FVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSE 940
NTR++ A A + S + ++Q F + L L R +A ++ +S F +
Sbjct: 716 LNTRIMGAKAFALTLSMFQDSTLQSFFTNVLVRCLELPFSTPRMLAGII-VSQFCSSWLQ 774
Query: 941 ELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRA 1000
+ P LP+ + +++ + +P L+P + RT + LL
Sbjct: 775 KHP-EGEKLPSFVSEIFSPVMNKQLLNRDEFPVFRELVPSLKALRT------QCQSLLAT 827
Query: 1001 METSSMFTEMLSANEIDV---ESLSADNAISFASKLQLLGSNSDG---SESLSRQML--D 1052
M + N V E+ + +A + ++ G D S + S ++L
Sbjct: 828 FVDVGMLPQYKLPNVAIVVQGETEAGPHAFGVETAEKVYGEYYDKMFKSMNNSYKLLAKK 887
Query: 1053 DIESIKQRMLTTSGYLKCVQSNLHXXXXXXXXXXXXWMSE-LPARLNPIILPLMASIKRX 1111
+E K R+L K + L + + LP +LNPII LM S+K
Sbjct: 888 PLEDSKHRVLMAINSAK-ESAKLRTGSILANYASSILLFDGLPLKLNPIIRSLMDSVKEE 946
Query: 1112 XXXXXXXXXXXXXXXXIADCIAR-KPSPNDKLIKNICSLTSMDPCETPQAAAMGSMEIID 1170
I + K + + K++KN+C +D E P + +
Sbjct: 947 RNEKLQTMAGESVVHLIQQLLENNKVNVSGKIVKNLCGFLCVDTSEVPDFSVNAEYK--- 1003
Query: 1171 DQDFLSFGSSTGKQKSRAHM-LAGGEDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLP 1229
+ L+ + ++ + LA + E + R+G + L+ L G S+ KLP
Sbjct: 1004 -EKILTLIKESNSIAAQDDINLA----KMSEEAQLKRKGGLITLKILFEVLGPSILQKLP 1058
Query: 1230 KLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKP-KLLTL 1288
+L L + L K+ Q ++++ ++R++ P + ++L+ ++ T
Sbjct: 1059 QLRSILFDSLSDHENEEASKV-----DNEQGQKIVDSFGVLRALFPFMSDSLRSSEVFTR 1113
Query: 1289 LPCIFKCVCHSHVSV-RLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAG 1347
P + + S++SV R +A+R +AK ++ VMA + +P++ S+ RQG+
Sbjct: 1114 FPVLLTFL-RSNLSVFRYSAARTFADLAKISSVEVMAYTIREILPLMNSAGSLSDRQGST 1172
Query: 1348 MLISLLVQGLGAEXXXXXXXXXXXXXRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPP 1407
LI L + + MSD ++ VR T +FAS++ L+PL G++ P
Sbjct: 1173 ELIYHLSLSMETDVLPYVIFLIVPLLGRMSDSNEDVRNLATTTFASIIKLVPLEAGIADP 1232
Query: 1408 TGLTEGLSRNAE-DAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLH 1466
GL E L + E + F++Q++D S +KL +K TLR+YQQ+G+NWLAFL ++ LH
Sbjct: 1233 KGLPEELVASRERERDFIQQMMDPSKAKPFKLPIAIKATLRKYQQDGVNWLAFLNKYHLH 1292
Query: 1467 GILCDDMGLGKTLQASAIVASDIAERRA----SNSIEE-IHPSLIICPSTLVGHWAFEIE 1521
GILCDDMGLGKTLQ I+ASD R+ + S+E PSLIICP +L GHW E +
Sbjct: 1293 GILCDDMGLGKTLQTICIIASDQYLRKEDYEKTRSVESRALPSLIICPPSLTGHWENEFD 1352
Query: 1522 KFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEG 1581
++ + + Y G R+ LR Q ++I+TSYDV R D L + +NYC+LDEG
Sbjct: 1353 QY--APFLKVVVYAGGPTVRLTLRPQLSDADIIVTSYDVARNDLAVLNKTEYNYCVLDEG 1410
Query: 1582 HIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYG 1641
HIIKNS+SK+ AVK++ A HRLIL+GTPIQNN+ +LWSLFDFLMPGFLGTE+ FQ +
Sbjct: 1411 HIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFA 1470
Query: 1642 KPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSA 1701
KP+ A+R+SK S+K+ EAGVLA+EALHKQV+PF+LRR K++VLSDLP KIIQD YC+L
Sbjct: 1471 KPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLSDLPPKIIQDYYCELGD 1530
Query: 1702 VQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLL 1761
+Q +LY F+ Q K + ++ E AD G+ H+FQALQY+ KLC+HP L
Sbjct: 1531 LQKQLYMDFTKKQ-KNVVEKDIENSEIAD-GK---------QHIFQALQYMRKLCNHPAL 1579
Query: 1762 VLGDKSPE--SLLCHLSELFPGSSDIISELHKASSLSQI--SCSSGD 1804
VL P+ + +L + DII+ K S+L + C G+
Sbjct: 1580 VLSPNHPQLAQVQDYLKQTGLDLHDIINA-PKLSALRTLLFECGIGE 1625
Score = 306 (112.8 bits), Expect = 5.3e-36, Sum P(3) = 5.3e-36
Identities = 156/689 (22%), Positives = 275/689 (39%)
Query: 496 KNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSL---VYET 552
+N L+D A R L + +LDRFGDYV D VVAPVRE+ AQ L A ++ +L ++
Sbjct: 342 RNSRSLEDLASRLLTVFALDRFGDYVYDTVVAPVRESVAQTLAALLIHLDSTLSIKIFNC 401
Query: 553 L-YILLQ--MQRR-PE--WEIRHGSLLGIKYLVAVRQEML--HGLLGYVLPACRAGLEDP 604
L ++LQ +Q P WE HG LLGI+Y V+++ L HGLL V+ GL
Sbjct: 402 LEQLVLQDPLQTGLPNKIWEATHGGLLGIRYFVSIKTNFLFAHGLLENVVRIVLYGLNQS 461
Query: 605 XXXXXXXXXXXXXXXXXXXXXXDGQTLHSIVMXX-XXXXXXXXXXSPSTSSVMNLLAEIY 663
+ T+ +V S S S+M+LLA++
Sbjct: 462 DDDVQSVAASILTPITSEFVKLNNSTIEILVTTIWSLLARLDDDISSSVGSIMDLLAKLC 521
Query: 664 SQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSV 723
+E++ + N+ + + + L P+L+PF+RHSI+SV
Sbjct: 522 DHQEVLDILK----------NKALE----------HPSEWSFKSLVPKLYPFLRHSISSV 561
Query: 724 RHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNL-LLESNEEILQCSDR 782
R + + L L +G F + + L + QN LL+ + ++
Sbjct: 562 RRAVLNLLIAFLSIKDDSTKNWLNGKVF--RLVFQNIL--LEQNPELLQLSFDVYVALLE 617
Query: 783 VWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKA-AAKM 841
++ V+ + L+ K + + L TP G M L H++ K
Sbjct: 618 HYK--VKHTEKTLDHVFSKHLQPILHLLNTPVGEKGKNYAMESQYILKPSQHYQLHPEKK 675
Query: 842 RAVKLENDSSGSVDLPQER---NGDTSTNSVKITV-GSDLEMSVTNTRVVTASALGIFAS 897
R++ E + + +P+ N D + IT+ G D+ + NTR++ A A + S
Sbjct: 676 RSIS-ETTTDSDIPIPKNNEHINIDAPMIAGDITLLGLDV---ILNTRIMGAKAFALTLS 731
Query: 898 KLHEGSIQ-FVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHL 956
+ ++Q F + L L R +A ++ +S F ++ P LP+ +
Sbjct: 732 MFQDSTLQSFFTNVLVRCLELPFSTPRMLAGII-VSQFCSSWLQKHP-EGEKLPSFVSEI 789
Query: 957 KQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQ---LLRAMETSSMFTEMLSA 1013
+++ + +P L+P + RT + +L + ++ +
Sbjct: 790 FSPVMNKQLLNRDEFPVFRELVPSLKALRTQCQSLLATFVDVGMLPQYKLPNVAIVVQGE 849
Query: 1014 NEIDVESLSADNAISFASKL--QLLGSNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCV 1071
E + + A + ++ S ++ + L+++ L+D K R+L K
Sbjct: 850 TEAGPHAFGVETAEKVYGEYYDKMFKSMNNSYKLLAKKPLEDS---KHRVLMAINSAK-E 905
Query: 1072 QSNLHXXXXXXXXXXXXWMSE-LPARLNPIILPLMASIKRXXXXXXXXXXXXXXXXXIAD 1130
+ L + + LP +LNPII LM S+K I
Sbjct: 906 SAKLRTGSILANYASSILLFDGLPLKLNPIIRSLMDSVKEERNEKLQTMAGESVVHLIQQ 965
Query: 1131 CIAR-KPSPNDKLIKNICSLTSMDPCETP 1158
+ K + + K++KN+C +D E P
Sbjct: 966 LLENNKVNVSGKIVKNLCGFLCVDTSEVP 994
Score = 156 (60.0 bits), Expect = 2.6e-156, Sum P(4) = 2.6e-156
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 1 MAQQSSRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDT 60
M + SRL+R + L++TGSTQ R AA Q+G++AK HP+D+ SLL +V +L K W+T
Sbjct: 1 MTSRVSRLDRQVILIETGSTQVVRNMAADQMGDLAKQHPEDILSLLSRVYPFLLVKKWET 60
Query: 61 RV 62
RV
Sbjct: 61 RV 62
Score = 87 (35.7 bits), Expect = 9.4e-156, Sum P(3) = 9.4e-156
Identities = 33/119 (27%), Positives = 56/119 (47%)
Query: 225 KRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFN--SNKADA 282
K+ SA+ N K I+ SK+ +M A T+P + +P + +AD
Sbjct: 208 KKMSAK--NTPKHPVDITESSVSKTLLNGKNMTNSAASLATSPTSNQLNPKLEITEQADE 265
Query: 283 --VLDEDS-----SEHE-GDGL-WPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHH 332
++ E + +HE GL W F+ E L+ ++ WE+RHG+ + LRE++ H
Sbjct: 266 SKLMIESTVRPLLEQHEIVAGLVWQFQGIYELLLDNLMSENWEIRHGAALGLRELVKKH 324
Score = 66 (28.3 bits), Expect = 2.6e-156, Sum P(4) = 2.6e-156
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 523 DQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLV 579
+ V P+ E G +++ +YE +LL WEIRHG+ LG++ LV
Sbjct: 271 ESTVRPLLEQHEIVAGLVWQFQG---IYE---LLLDNLMSENWEIRHGAALGLRELV 321
Score = 45 (20.9 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 345 PDGALNVEFKDKDSITMKREREI----DLNVQVPADEPE 379
PD ++N E+K+K +K I D+N+ ++E +
Sbjct: 994 PDFSVNAEYKEKILTLIKESNSIAAQDDINLAKMSEEAQ 1032
Score = 43 (20.2 bits), Expect = 4.1e-151, Sum P(3) = 4.1e-151
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 303 VEQLILDMFDP--------VWEVRHGSVMALR 326
+EQL+L DP +WE HG ++ +R
Sbjct: 402 LEQLVLQ--DPLQTGLPNKIWEATHGGLLGIR 431
Score = 41 (19.5 bits), Expect = 2.6e-156, Sum P(4) = 2.6e-156
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 414 DDSGCNLPAGSVNGQ-LDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGEKGDFLNSE 472
D + +L G+ G LD + VK+E E + +++L+ D+ +E
Sbjct: 79 DPNESDLVGGTNEGSPLDNAQVKLEHEMKIKLEEATQNNQLNLLQEDHHLSSLSDWKLNE 138
Query: 473 TLKN 476
LK+
Sbjct: 139 ILKS 142
Score = 39 (18.8 bits), Expect = 1.8e-153, Sum P(4) = 1.8e-153
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 649 SPSTSSVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVV 687
SP TS+ +N EI Q + M+ +T + + +E+V
Sbjct: 247 SP-TSNQLNPKLEITEQADESKLMIESTVRPLLEQHEIV 284
Score = 39 (18.8 bits), Expect = 2.0e-143, Sum P(3) = 2.0e-143
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 23 TRFTAARQIGEIAKTHP 39
TR TAAR +G I P
Sbjct: 60 TRVTAARAVGGIVAHAP 76
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 1120 (399.3 bits), Expect = 2.8e-114, Sum P(2) = 2.8e-114
Identities = 227/441 (51%), Positives = 302/441 (68%)
Query: 1376 MSDCDQSVRQSVTRSFASLVPLLPLARGV-SPPTGLTEGLSRNAEDAQFLEQLLDNSHID 1434
MSD SVR T+ FA+L+ L+PL G+ PP E + A++ FLEQLLD ++
Sbjct: 23 MSDQTDSVRFMATQCFATLIRLMPLEAGIPDPPNMSAELIQLKAKERHFLEQLLDGKKLE 82
Query: 1435 DYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERR- 1493
+YK+ + LR+YQQ+G+NWLAFL ++KLHGILCDDMGLGKTLQ+ I+A D R
Sbjct: 83 NYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQ 142
Query: 1494 --ASNSIEEIHP--SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD 1549
A + + E P SL++CP TL GHW E+ KF ++ L Y G +RI L+ Q
Sbjct: 143 EYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVK 202
Query: 1550 KHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
+HN+I+ SYDVVR D D+ + +NYCILDEGH+IKN K+K++ AVKQL A +R+ILSGT
Sbjct: 203 RHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGT 262
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
PIQNN+ +LWSLFDFLMPGFLGTERQF A YGKP++A+RD++ S+++ EAGVLAM+ALH+
Sbjct: 263 PIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHR 322
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESA 1729
QV+PFLLRR K++VL DLP KIIQD YC LS +Q++LYE F+ S+AK ++ V +
Sbjct: 323 QVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLS 382
Query: 1730 DKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDI--IS 1787
++ E + KA+ HVFQALQYL KLC+HP LVL + PE +L +S + I
Sbjct: 383 EETEKPKL--KATGHVFQALQYLRKLCNHPALVLTPQHPE-FKTTAEKLAVQNSSLHDIQ 439
Query: 1788 ELHKASSLSQI--SCSSGDNG 1806
K S+L Q+ C G NG
Sbjct: 440 HAPKLSALKQLLLDCGLG-NG 459
Score = 42 (19.8 bits), Expect = 2.8e-114, Sum P(2) = 2.8e-114
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 1277 LDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTI 1320
LD + P ++ L+ + + SVR A++C ++ + M +
Sbjct: 4 LDVGIVPYIVLLVVPVLGRMSDQTDSVRFMATQCFATLIRLMPL 47
>WB|WBGene00000274 [details] [associations]
symbol:btf-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15192 InterPro:IPR022707
Pfam:PF12054 EMBL:Z80344 EMBL:Z82081 GeneTree:ENSGT00630000089754
EMBL:Z82079 RefSeq:NP_496802.2 ProteinModelPortal:G5EF07 SMR:G5EF07
EnsemblMetazoa:F15D4.1 GeneID:174965 KEGG:cel:CELE_F15D4.1
CTD:174965 WormBase:F15D4.1 OMA:ENDAMAS NextBio:886220
Uniprot:G5EF07
Length = 1649
Score = 574 (207.1 bits), Expect = 2.5e-58, Sum P(4) = 2.5e-58
Identities = 147/443 (33%), Positives = 236/443 (53%)
Query: 1292 IFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLIS 1351
IF V ++R A ++ I + KS + ++ + + D+ +V++R A +
Sbjct: 943 IFSLVPSEDPAIRYAFAKAIETFFKSSCGDTLSKCYNRLVVLSKDLDNVNSRLSAVEVFL 1002
Query: 1352 LLVQGLGAEXXXXXXXXXXXXXRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLT 1411
L ++D ++VR + +F L+P++ L G++
Sbjct: 1003 RLCMMDTRYLNGWATLLAPVIFPLLADQCETVRDAAGEAFRRLIPVITLENPDFSIEGMS 1062
Query: 1412 -EGLSRNAEDAQFLEQLLDNSHIDDYKLGTELK-----VTLRRYQQEGINWLAFLKRFKL 1465
E L++ +E + F+ L S + + +++ LR YQ EGI W+ FL+ + L
Sbjct: 1063 QELLAKKSEYSNFINVLGSPSSLPRV-IRADIRGGFDTSMLREYQLEGITWIRFLRTYGL 1121
Query: 1466 HGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP-SLIICPSTLVGHWAFEIEKFI 1524
HGIL DDMGLGKTLQ +A + +R + + E H SLI+CP TLV HW E +F
Sbjct: 1122 HGILADDMGLGKTLQTMCSIALSV-DR---DEMSEFHRCSLIVCPRTLVDHWCLEWNRFF 1177
Query: 1525 DVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHII 1584
Q V ++++ + + +YD + K A Y+ +WNY +LDEGH++
Sbjct: 1178 P-------QRVPASKNLTRCHGA----EICVIAYDEL-KTA-YMMDRVWNYIVLDEGHVM 1224
Query: 1585 KNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPL 1644
+NSK + QL RLILSGTP+QN+ DLWSLF +LMPG+LG+E+QF++ + K +
Sbjct: 1225 RNSKLRAWKFASQLVGKSRLILSGTPVQNSPADLWSLFAWLMPGYLGSEKQFRSQFLKKI 1284
Query: 1645 VAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQL 1704
+ R K + D +AG A+ LHK V+PF++RR K EVL +LPEK +QD C+L+ Q
Sbjct: 1285 MKCRLPKANEADLKAGSAAISQLHKLVLPFVMRRLKTEVLKELPEKNVQDYECELTEDQK 1344
Query: 1705 KLY----EKFSGSQAKQEISSMV 1723
++Y ++ + SQ +SS+V
Sbjct: 1345 EIYRFVVDRCTSSQEDVGLSSLV 1367
Score = 121 (47.7 bits), Expect = 2.5e-58, Sum P(4) = 2.5e-58
Identities = 35/99 (35%), Positives = 50/99 (50%)
Query: 488 KLARHSWQKNCEFLQDCAIRFLC-ILSLDRFGDYVSDQ-VVAPVRETCAQALGAAFKYMH 545
++A S+ + L D + L +L LD+F D++S + APVRE CAQAL +
Sbjct: 224 QIASTSYDRLSYELIDTILYLLIHVLILDKFNDFISGRNATAPVREQCAQALVHMLRNTD 283
Query: 546 PSLVYETLYILLQMQRRP---EWEIRHGSLLGIKYLVAV 581
L I++QM R P W IR LL +KY A+
Sbjct: 284 EKRREVVLEIVVQMVRTPGEKNWNIRQSGLLILKYYFAI 322
Score = 59 (25.8 bits), Expect = 2.5e-58, Sum P(4) = 2.5e-58
Identities = 26/101 (25%), Positives = 46/101 (45%)
Query: 2 AQQSSRLNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTR 61
A S+RL +L LL+ + R AA G+++ +D+ + L+K + S+ W+TR
Sbjct: 3 ADTSARLLQLDPLLEAKNPNV-RNEAAAAFGKLSILS-EDVKNSLKK---HAASQLWETR 57
Query: 62 VXXXXXXXXXXQNV-KLTTLK-ELFSCVETKMSEVGISGIV 100
V QN + LK E S V + + + ++
Sbjct: 58 VSAGKALQATLQNAPEFERLKNEEDSSVSENVRSIVVMNVL 98
Score = 48 (22.0 bits), Expect = 2.5e-58, Sum P(4) = 2.5e-58
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 283 VLDEDSSEHEGDGLWPFRSFVE---QLILDMFDPVWEVRHGSVMALREI 328
+ DE++ + DG+ + F++ +L+ + + W RHG +A+ +I
Sbjct: 178 IFDEENGNCD-DGIERQKKFLKVLRELVNLVAEKQWYARHGGAIAICQI 225
Score = 44 (20.5 bits), Expect = 2.1e-50, Sum P(3) = 2.1e-50
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 1156 ETPQAAAMGSMEIIDDQDFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGS 1209
E +A + S + + D +FL G S Q S + L E +++E F G+
Sbjct: 134 EYNRATGISSTKFLSDDEFLHQGISEPDQPSTSKEL--DEVVTKIEIFDEENGN 185
Score = 40 (19.1 bits), Expect = 5.4e-50, Sum P(3) = 5.4e-50
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 556 LLQMQRRPEWEIRHGSLLGIKYLVAVRQEML-HGLLGYVL 594
L+ + +W RHG + I + + + L + L+ +L
Sbjct: 203 LVNLVAEKQWYARHGGAIAICQIASTSYDRLSYELIDTIL 242
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 463 (168.0 bits), Expect = 5.0e-40, P = 5.0e-40
Identities = 122/351 (34%), Positives = 184/351 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L++YQ +G+ WL L L+GIL D+MGLGKT+Q A++ + E + N P L
Sbjct: 6 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRING-----PFL 59
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRK 1563
II P + + +WA+E +K+ S++ + Y GS R A Q K NV++T+Y+ + K
Sbjct: 60 IIVPLSTLSNWAYEFDKWAP-SVVK-VSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIK 117
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSLF 1622
D L ++ W Y I+DEGH +KN K+T + A RL+L+GTP+QN + +LW+L
Sbjct: 118 DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALL 177
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K E
Sbjct: 178 NFLLPTIFKSCSTFEQWFNAPF-AMTGEKVDLNEEET-ILIIRRLHKVLRPFLLRRLKKE 235
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V + LPEK+ CD+SA+Q LY QAK + + E KG+G +
Sbjct: 236 VEAQLPEKVEYVIKCDMSALQRVLYRHM---QAKGVL--LTDGSEKDKKGKGGTKT---- 286
Query: 1743 THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
+ + L K+C+HP + ES HL F G +L++AS
Sbjct: 287 --LMNTIMQLRKICNHPYMF--QHIEESFSEHLG--FTGGIVQGLDLYRAS 331
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 463 (168.0 bits), Expect = 7.4e-40, P = 7.4e-40
Identities = 122/351 (34%), Positives = 184/351 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L++YQ +G+ WL L L+GIL D+MGLGKT+Q A++ + E + N P L
Sbjct: 87 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRING-----PFL 140
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRK 1563
II P + + +WA+E +K+ S++ + Y GS R A Q K NV++T+Y+ + K
Sbjct: 141 IIVPLSTLSNWAYEFDKWAP-SVVK-VSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIK 198
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSLF 1622
D L ++ W Y I+DEGH +KN K+T + A RL+L+GTP+QN + +LW+L
Sbjct: 199 DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALL 258
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K E
Sbjct: 259 NFLLPTIFKSCSTFEQWFNAPF-AMTGEKVDLNEEET-ILIIRRLHKVLRPFLLRRLKKE 316
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V + LPEK+ CD+SA+Q LY QAK + + E KG+G +
Sbjct: 317 VEAQLPEKVEYVIKCDMSALQRVLYRHM---QAKGVL--LTDGSEKDKKGKGGTKT---- 367
Query: 1743 THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
+ + L K+C+HP + ES HL F G +L++AS
Sbjct: 368 --LMNTIMQLRKICNHPYMF--QHIEESFSEHLG--FTGGIVQGLDLYRAS 412
>UNIPROTKB|O53499 [details] [associations]
symbol:helZ "PROBABLE HELICASE HELZ" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842578
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
PIR:B70841 RefSeq:NP_216617.1 ProteinModelPortal:O53499 SMR:O53499
EnsemblBacteria:EBMYCT00000002428 GeneID:888635 KEGG:mtu:Rv2101
PATRIC:18153236 TubercuList:Rv2101 HOGENOM:HOG000099451 OMA:PYQERGL
ProtClustDB:CLSK872005 InterPro:IPR022138 Pfam:PF12419
Uniprot:O53499
Length = 1013
Score = 463 (168.0 bits), Expect = 8.0e-40, P = 8.0e-40
Identities = 97/266 (36%), Positives = 149/266 (56%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TLR YQQ G+ WLAFL L L DDMGLGKT+Q A+ + +R + P+
Sbjct: 532 TLRPYQQRGLAWLAFLSSLGLGSCLADDMGLGKTVQLLALETLESVQRHQDRGVG---PT 588
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKD 1564
L++CP +LVG+W E +F +L + G+ ALR+ ++ ++++++Y +D
Sbjct: 589 LLLCPMSLVGNWPQEAARFAP-NLRVYAHHGGARLHGEALRDHLERTDLVVSTYTTATRD 647
Query: 1565 ADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDF 1624
D L + WN +LDE +KNS S+ AV++L+AAHR+ L+GTP++N + +LWS+ DF
Sbjct: 648 IDELAEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAELWSIMDF 707
Query: 1625 LMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE-- 1682
L PG LG+ +F+ Y P+ + E L P++LRR K +
Sbjct: 708 LNPGLLGSSERFRTRYAIPI-----------ERHGHTEPAERLRASTRPYILRRLKTDPA 756
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYE 1708
++ DLPEKI +YC L+ Q LY+
Sbjct: 757 IIDDLPEKIEIKQYCQLTTEQASLYQ 782
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 463 (168.0 bits), Expect = 1.3e-39, P = 1.3e-39
Identities = 122/351 (34%), Positives = 184/351 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L++YQ +G+ WL L L+GIL D+MGLGKT+Q A++ + E + N P L
Sbjct: 553 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRING-----PFL 606
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRK 1563
II P + + +WA+E +K+ S++ + Y GS R A Q K NV++T+Y+ + K
Sbjct: 607 IIVPLSTLSNWAYEFDKWAP-SVVK-VSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIK 664
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSLF 1622
D L ++ W Y I+DEGH +KN K+T + A RL+L+GTP+QN + +LW+L
Sbjct: 665 DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALL 724
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K E
Sbjct: 725 NFLLPTIFKSCSTFEQWFNAPF-AMTGEKVDLNEEET-ILIIRRLHKVLRPFLLRRLKKE 782
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V + LPEK+ CD+SA+Q LY QAK + + E KG+G +
Sbjct: 783 VEAQLPEKVEYVIKCDMSALQRVLYRHM---QAKGVL--LTDGSEKDKKGKGGTKT---- 833
Query: 1743 THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
+ + L K+C+HP + ES HL F G +L++AS
Sbjct: 834 --LMNTIMQLRKICNHPYMF--QHIEESFSEHLG--FTGGIVQGLDLYRAS 878
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 463 (168.0 bits), Expect = 2.0e-39, P = 2.0e-39
Identities = 122/351 (34%), Positives = 184/351 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L++YQ +G+ WL L L+GIL D+MGLGKT+Q A++ + E + N P L
Sbjct: 746 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRING-----PFL 799
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRK 1563
II P + + +WA+E +K+ S++ + Y GS R A Q K NV++T+Y+ + K
Sbjct: 800 IIVPLSTLSNWAYEFDKWAP-SVVK-VSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIK 857
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSLF 1622
D L ++ W Y I+DEGH +KN K+T + A RL+L+GTP+QN + +LW+L
Sbjct: 858 DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALL 917
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K E
Sbjct: 918 NFLLPTIFKSCSTFEQWFNAPF-AMTGEKVDLNEEET-ILIIRRLHKVLRPFLLRRLKKE 975
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V + LPEK+ CD+SA+Q LY QAK + + E KG+G +
Sbjct: 976 VEAQLPEKVEYVIKCDMSALQRVLYRHM---QAKGVL--LTDGSEKDKKGKGGTKT---- 1026
Query: 1743 THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
+ + L K+C+HP + ES HL F G +L++AS
Sbjct: 1027 --LMNTIMQLRKICNHPYMF--QHIEESFSEHLG--FTGGIVQGLDLYRAS 1071
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 463 (168.0 bits), Expect = 2.0e-39, P = 2.0e-39
Identities = 122/351 (34%), Positives = 184/351 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L++YQ +G+ WL L L+GIL D+MGLGKT+Q A++ + E + N P L
Sbjct: 746 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRING-----PFL 799
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRK 1563
II P + + +WA+E +K+ S++ + Y GS R A Q K NV++T+Y+ + K
Sbjct: 800 IIVPLSTLSNWAYEFDKWAP-SVVK-VSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIK 857
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSLF 1622
D L ++ W Y I+DEGH +KN K+T + A RL+L+GTP+QN + +LW+L
Sbjct: 858 DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALL 917
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K E
Sbjct: 918 NFLLPTIFKSCSTFEQWFNAPF-AMTGEKVDLNEEET-ILIIRRLHKVLRPFLLRRLKKE 975
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V + LPEK+ CD+SA+Q LY QAK + + E KG+G +
Sbjct: 976 VEAQLPEKVEYVIKCDMSALQRVLYRHM---QAKGVL--LTDGSEKDKKGKGGTKT---- 1026
Query: 1743 THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
+ + L K+C+HP + ES HL F G +L++AS
Sbjct: 1027 --LMNTIMQLRKICNHPYMF--QHIEESFSEHLG--FTGGIVQGLDLYRAS 1071
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 463 (168.0 bits), Expect = 2.1e-39, P = 2.1e-39
Identities = 122/351 (34%), Positives = 184/351 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L++YQ +G+ WL L L+GIL D+MGLGKT+Q A++ + E + N P L
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRING-----PFL 807
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRK 1563
II P + + +WA+E +K+ S++ + Y GS R A Q K NV++T+Y+ + K
Sbjct: 808 IIVPLSTLSNWAYEFDKWAP-SVVK-VSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIK 865
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSLF 1622
D L ++ W Y I+DEGH +KN K+T + A RL+L+GTP+QN + +LW+L
Sbjct: 866 DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALL 925
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K E
Sbjct: 926 NFLLPTIFKSCSTFEQWFNAPF-AMTGEKVDLNEEET-ILIIRRLHKVLRPFLLRRLKKE 983
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V + LPEK+ CD+SA+Q LY QAK + + E KG+G +
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHM---QAKGVL--LTDGSEKDKKGKGGTKT---- 1034
Query: 1743 THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
+ + L K+C+HP + ES HL F G +L++AS
Sbjct: 1035 --LMNTIMQLRKICNHPYMF--QHIEESFSEHLG--FTGGIVQGLDLYRAS 1079
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 463 (168.0 bits), Expect = 2.1e-39, P = 2.1e-39
Identities = 122/351 (34%), Positives = 184/351 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L++YQ +G+ WL L L+GIL D+MGLGKT+Q A++ + E + N P L
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRING-----PFL 807
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRK 1563
II P + + +WA+E +K+ S++ + Y GS R A Q K NV++T+Y+ + K
Sbjct: 808 IIVPLSTLSNWAYEFDKWAP-SVVK-VSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIK 865
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSLF 1622
D L ++ W Y I+DEGH +KN K+T + A RL+L+GTP+QN + +LW+L
Sbjct: 866 DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALL 925
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K E
Sbjct: 926 NFLLPTIFKSCSTFEQWFNAPF-AMTGEKVDLNEEET-ILIIRRLHKVLRPFLLRRLKKE 983
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V + LPEK+ CD+SA+Q LY QAK + + E KG+G +
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHM---QAKGVL--LTDGSEKDKKGKGGTKT---- 1034
Query: 1743 THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
+ + L K+C+HP + ES HL F G +L++AS
Sbjct: 1035 --LMNTIMQLRKICNHPYMF--QHIEESFSEHLG--FTGGIVQGLDLYRAS 1079
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 463 (168.0 bits), Expect = 2.1e-39, P = 2.1e-39
Identities = 122/351 (34%), Positives = 184/351 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L++YQ +G+ WL L L+GIL D+MGLGKT+Q A++ + E + N P L
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRING-----PFL 807
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRK 1563
II P + + +WA+E +K+ S++ + Y GS R A Q K NV++T+Y+ + K
Sbjct: 808 IIVPLSTLSNWAYEFDKWAP-SVVK-VSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIK 865
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSLF 1622
D L ++ W Y I+DEGH +KN K+T + A RL+L+GTP+QN + +LW+L
Sbjct: 866 DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALL 925
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K E
Sbjct: 926 NFLLPTIFKSCSTFEQWFNAPF-AMTGEKVDLNEEET-ILIIRRLHKVLRPFLLRRLKKE 983
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V + LPEK+ CD+SA+Q LY QAK + + E KG+G +
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHM---QAKGVL--LTDGSEKDKKGKGGTKT---- 1034
Query: 1743 THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
+ + L K+C+HP + ES HL F G +L++AS
Sbjct: 1035 --LMNTIMQLRKICNHPYMF--QHIEESFSEHLG--FTGGIVQGLDLYRAS 1079
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 463 (168.0 bits), Expect = 2.1e-39, P = 2.1e-39
Identities = 122/351 (34%), Positives = 184/351 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L++YQ +G+ WL L L+GIL D+MGLGKT+Q A++ + E + N P L
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRING-----PFL 807
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRK 1563
II P + + +WA+E +K+ S++ + Y GS R A Q K NV++T+Y+ + K
Sbjct: 808 IIVPLSTLSNWAYEFDKWAP-SVVK-VSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIK 865
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSLF 1622
D L ++ W Y I+DEGH +KN K+T + A RL+L+GTP+QN + +LW+L
Sbjct: 866 DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALL 925
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K E
Sbjct: 926 NFLLPTIFKSCSTFEQWFNAPF-AMTGEKVDLNEEET-ILIIRRLHKVLRPFLLRRLKKE 983
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V + LPEK+ CD+SA+Q LY QAK + + E KG+G +
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHM---QAKGVL--LTDGSEKDKKGKGGTKT---- 1034
Query: 1743 THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
+ + L K+C+HP + ES HL F G +L++AS
Sbjct: 1035 --LMNTIMQLRKICNHPYMF--QHIEESFSEHLG--FTGGIVQGLDLYRAS 1079
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 463 (168.0 bits), Expect = 2.1e-39, P = 2.1e-39
Identities = 122/351 (34%), Positives = 184/351 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L++YQ +G+ WL L L+GIL D+MGLGKT+Q A++ + E + N P L
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRING-----PFL 807
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRK 1563
II P + + +WA+E +K+ S++ + Y GS R A Q K NV++T+Y+ + K
Sbjct: 808 IIVPLSTLSNWAYEFDKWAP-SVVK-VSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIK 865
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSLF 1622
D L ++ W Y I+DEGH +KN K+T + A RL+L+GTP+QN + +LW+L
Sbjct: 866 DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALL 925
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K E
Sbjct: 926 NFLLPTIFKSCSTFEQWFNAPF-AMTGEKVDLNEEET-ILIIRRLHKVLRPFLLRRLKKE 983
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V + LPEK+ CD+SA+Q LY QAK + + E KG+G +
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHM---QAKGVL--LTDGSEKDKKGKGGTKT---- 1034
Query: 1743 THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
+ + L K+C+HP + ES HL F G +L++AS
Sbjct: 1035 --LMNTIMQLRKICNHPYMF--QHIEESFSEHLG--FTGGIVQGLDLYRAS 1079
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 463 (168.0 bits), Expect = 2.1e-39, P = 2.1e-39
Identities = 122/351 (34%), Positives = 184/351 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L++YQ +G+ WL L L+GIL D+MGLGKT+Q A++ + E + N P L
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRING-----PFL 807
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRK 1563
II P + + +WA+E +K+ S++ + Y GS R A Q K NV++T+Y+ + K
Sbjct: 808 IIVPLSTLSNWAYEFDKWAP-SVVK-VSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIK 865
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSLF 1622
D L ++ W Y I+DEGH +KN K+T + A RL+L+GTP+QN + +LW+L
Sbjct: 866 DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALL 925
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K E
Sbjct: 926 NFLLPTIFKSCSTFEQWFNAPF-AMTGEKVDLNEEET-ILIIRRLHKVLRPFLLRRLKKE 983
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V + LPEK+ CD+SA+Q LY QAK + + E KG+G +
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHM---QAKGVL--LTDGSEKDKKGKGGTKT---- 1034
Query: 1743 THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
+ + L K+C+HP + ES HL F G +L++AS
Sbjct: 1035 --LMNTIMQLRKICNHPYMF--QHIEESFSEHLG--FTGGIVQGLDLYRAS 1079
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 463 (168.0 bits), Expect = 2.2e-39, P = 2.2e-39
Identities = 122/351 (34%), Positives = 184/351 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L++YQ +G+ WL L L+GIL D+MGLGKT+Q A++ + E + N P L
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRING-----PFL 807
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRK 1563
II P + + +WA+E +K+ S++ + Y GS R A Q K NV++T+Y+ + K
Sbjct: 808 IIVPLSTLSNWAYEFDKWAP-SVVK-VSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIK 865
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSLF 1622
D L ++ W Y I+DEGH +KN K+T + A RL+L+GTP+QN + +LW+L
Sbjct: 866 DKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALL 925
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K E
Sbjct: 926 NFLLPTIFKSCSTFEQWFNAPF-AMTGEKVDLNEEET-ILIIRRLHKVLRPFLLRRLKKE 983
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V + LPEK+ CD+SA+Q LY QAK + + E KG+G +
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHM---QAKGVL--LTDGSEKDKKGKGGTKT---- 1034
Query: 1743 THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
+ + L K+C+HP + ES HL F G +L++AS
Sbjct: 1035 --LMNTIMQLRKICNHPYMF--QHIEESFSEHLG--FTGGIVQGLDLYRAS 1079
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 460 (167.0 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 110/294 (37%), Positives = 160/294 (54%)
Query: 1434 DDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVA----SDI 1489
+ +K+ L L +YQQ G+ WL L + GIL D+MGLGKT+Q A +A S I
Sbjct: 489 EGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKI 548
Query: 1490 AERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA--LREQ 1547
R ++ E + P+LI+CP+T++ W E + ++ L GS R +R+
Sbjct: 549 RTRGSNYRFEGLGPTLIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSCAHRKERLVRDI 608
Query: 1548 FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILS 1607
H V+ITSY +R D + + W+Y ILDEGH I+N + +T+A KQ + HR+ILS
Sbjct: 609 VHCHGVLITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILS 668
Query: 1608 GTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL 1667
G+P+QNN+ +LWSLFDF PG LGT F + P+ S S + L
Sbjct: 669 GSPMQNNLRELWSLFDFTFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVL 728
Query: 1668 HKQVMPFLLRRTKDEV-LS-DLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEI 1719
+ P+LLRR K +V +S LP+K Q +C L+ Q K+Y+ F S+A I
Sbjct: 729 RDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKAVYRI 782
Score = 63 (27.2 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 28/114 (24%), Positives = 50/114 (43%)
Query: 145 IDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFD-RRFY 203
ID + P + Q L+ LG+DV +Q V +++ D +H+ + D + Y
Sbjct: 75 IDRHQIPAVEPSAQALELQG-LGVDVYDQAVLEEGVLQQVDSAMHEASRVAQRADAEKEY 133
Query: 204 TSA---------SAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSK 248
S S I +++ + P S R R+L+ +KR+ K + + Q K
Sbjct: 134 QSVLDDLMSCTTSLRQINKIIEQLSPQAASNRDINRKLDSVKRQ-KYNKEQQLK 186
Score = 48 (22.0 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 1745 VFQALQYLLKLCSHPLLVLGDKSPESLL 1772
+F L L K+C+HP L G S L
Sbjct: 789 IFSGLVALRKICNHPDLFSGGPKNTSAL 816
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 455 (165.2 bits), Expect = 7.1e-39, P = 7.1e-39
Identities = 105/278 (37%), Positives = 166/278 (59%)
Query: 1440 TELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIE 1499
T+L+ LR YQQ+G+NWL FLK ++L GIL DDMGLGKT+Q A + + +++ ++
Sbjct: 626 TQLQAELRPYQQQGLNWLCFLKEYQLGGILADDMGLGKTIQTLAFL---LKQKQLKSAAG 682
Query: 1500 EIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYD 1559
PSLIICP++LVG+WA E KF SL TL + AQ R L + + +V++T+Y
Sbjct: 683 PHLPSLIICPTSLVGNWAKEAAKFAP-SL--TLAVIHGAQ-RGPLLARLSEFDVVVTTYP 738
Query: 1560 VVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLW 1619
++ +D DY + + +LDE IKN+++K++ +K L++ +L L+GTP++N++ +L
Sbjct: 739 LMVRDNDYYQAQAFEHIVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELK 798
Query: 1620 SLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRT 1679
SL DF +PG LGT F + + DS+ ++ L +++ PF+LRRT
Sbjct: 799 SLMDFCLPGLLGTTAYFNKEFRNRIERYGDSE-----------QVKVLSQRIAPFVLRRT 847
Query: 1680 KDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQ 1717
K EV+++LP K + +L Q LYE S K+
Sbjct: 848 KAEVVTELPPKTEIYQSLELEKDQRNLYESIRLSMEKK 885
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 455 (165.2 bits), Expect = 7.1e-39, P = 7.1e-39
Identities = 105/278 (37%), Positives = 166/278 (59%)
Query: 1440 TELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIE 1499
T+L+ LR YQQ+G+NWL FLK ++L GIL DDMGLGKT+Q A + + +++ ++
Sbjct: 626 TQLQAELRPYQQQGLNWLCFLKEYQLGGILADDMGLGKTIQTLAFL---LKQKQLKSAAG 682
Query: 1500 EIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYD 1559
PSLIICP++LVG+WA E KF SL TL + AQ R L + + +V++T+Y
Sbjct: 683 PHLPSLIICPTSLVGNWAKEAAKFAP-SL--TLAVIHGAQ-RGPLLARLSEFDVVVTTYP 738
Query: 1560 VVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLW 1619
++ +D DY + + +LDE IKN+++K++ +K L++ +L L+GTP++N++ +L
Sbjct: 739 LMVRDNDYYQAQAFEHIVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELK 798
Query: 1620 SLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRT 1679
SL DF +PG LGT F + + DS+ ++ L +++ PF+LRRT
Sbjct: 799 SLMDFCLPGLLGTTAYFNKEFRNRIERYGDSE-----------QVKVLSQRIAPFVLRRT 847
Query: 1680 KDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQ 1717
K EV+++LP K + +L Q LYE S K+
Sbjct: 848 KAEVVTELPPKTEIYQSLELEKDQRNLYESIRLSMEKK 885
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 475 (172.3 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 115/320 (35%), Positives = 176/320 (55%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ WL L L+GIL D+MGLGKT+Q ++V + +R+ + + P
Sbjct: 772 TLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTY-LMDRK-----KVMGPY 825
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LII P + + +W E EK+ + + Y GS Q R L+ Q K NV++T+Y+ V
Sbjct: 826 LIIVPLSTLPNWVLEFEKWAPA--VGVVSYKGSPQGRRLLQNQMRATKFNVLLTTYEYVI 883
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSL 1621
KD L ++ W Y I+DEGH +KN K+T + A +RL+L+GTP+QN + +LW+L
Sbjct: 884 KDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWAL 943
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K
Sbjct: 944 LNFLLPSIFKSCSTFEQWFNAPF-ATTGEKVELNEEET-ILIIRRLHKVLRPFLLRRLKK 1001
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV LP+K+ CD+SA+Q LY+ Q+K V + + ++KG+ AKA
Sbjct: 1002 EVEHQLPDKVEYIIKCDMSALQRVLYKHM---QSKG-----VLLTDGSEKGKHGKGGAKA 1053
Query: 1742 STHVFQALQYLLKLCSHPLL 1761
+ + L KLC+HP +
Sbjct: 1054 ---LMNTIVQLRKLCNHPFM 1070
Score = 37 (18.1 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 209 HNIQRLVSSMVPSVISKRPSARELNMLKRKAK 240
H +QR + SM + + P +L ++ +K
Sbjct: 139 HALQRAIDSMEEKGLQEDPRYSQLLAMRATSK 170
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 451 (163.8 bits), Expect = 4.2e-38, P = 4.2e-38
Identities = 111/321 (34%), Positives = 176/321 (54%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MGLGKT+Q A + I ++ P
Sbjct: 868 TLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIEKKNQQG------PF 921
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LII P + + +W E EK+ + + Y G Q R L+ Q NV++T+++ +
Sbjct: 922 LIIVPLSTLTNWIMEFEKW--APSVKKIAYKGPPQLRKTLQSQIRSSNFNVLLTTFEYII 979
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-KAAHRLILSGTPIQNNITDLWSL 1621
KD L ++ W + I+DEGH IKN++SK+T + + +RLIL+GTP+QNN+ +LW+L
Sbjct: 980 KDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNNLPELWAL 1039
Query: 1622 FDFLMPGFLGTERQFQATYGKPLV-AARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTK 1680
+F++P + + F + P K + EA +L ++ LHK + PFL RR K
Sbjct: 1040 LNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEA-LLIIKRLHKVLRPFLFRRLK 1098
Query: 1681 DEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAK 1740
+V +LP+K+ + C LS +QLKLY+ Q K+ M+ VD +KG+ +
Sbjct: 1099 KDVEKELPDKVEKVIKCPLSGLQLKLYQ-----QMKKH--GMLFVD--GEKGK-TGIKGL 1148
Query: 1741 ASTHVFQALQYLLKLCSHPLL 1761
+T V Q L K+C+HP +
Sbjct: 1149 QNT-VMQ----LKKICNHPFI 1164
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 466 (169.1 bits), Expect = 5.8e-38, Sum P(2) = 5.8e-38
Identities = 108/325 (33%), Positives = 180/325 (55%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L+ YQ +G+ W+ L KL+GIL D+MGLGKT+Q A+V S + E + +N P L
Sbjct: 1711 LKPYQMQGLQWMVSLYNNKLNGILADEMGLGKTIQTIALV-SYLIEVKKNNG-----PFL 1764
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF---DKHNVIITSYDVVR 1562
++ P + + +W E K+ + + Y G R + E+F + N ++T+Y+ +
Sbjct: 1765 VVVPLSTLSNWGQEFSKW--APKVKRVLYYGDKPARKSKFEEFIAPGQFNAVVTTYEYII 1822
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAV-KQLKAAHRLILSGTPIQNNITDLWSL 1621
KD + L ++ WNY I+DEGH +KN SK+++ + + +RL+L+GTP+QN++ +LW+L
Sbjct: 1823 KDKNALSKIKWNYLIVDEGHRMKNYTSKLSIILGTSYSSRYRLLLTGTPLQNSLPELWAL 1882
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P F+ + P A K + E +L ++ LHK + PFLLRR K
Sbjct: 1883 LNFLLPTIFDCVEDFEQWFNAPF-AQTGEKIEMNEEEQ-LLIIQRLHKVLRPFLLRRLKK 1940
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV + LP+K+ + CD+SA Q K+Y+ + +S + S+ +GN AK
Sbjct: 1941 EVEAQLPDKVEKVLKCDMSAFQAKMYDLIK----TKGVSKLA----SSGGADGNPKLAKG 1992
Query: 1742 STHVFQALQYLLKLCSHPLLVLGDK 1766
+ + L+ K+C+HP L D+
Sbjct: 1993 LKNTYVQLR---KICNHPYLFYDDE 2014
Score = 50 (22.7 bits), Expect = 5.8e-38, Sum P(2) = 5.8e-38
Identities = 25/110 (22%), Positives = 51/110 (46%)
Query: 146 DNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTS 205
+N+ N + + K ++ + G E + LND KD++ I + D T+
Sbjct: 1534 NNNNNNNDNGNKPKVSINNQGGYGDDEDDIGLNDN-KDDEKITN---------DNTTTTT 1583
Query: 206 ASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSKSWSEDGD 255
+++ N ++ + K +++E+ + K +KDQSK+ + DGD
Sbjct: 1584 SASSNTDVIMKNDSGQHTDK--NSKEI---QEKKDNDNKDQSKATTIDGD 1628
Score = 39 (18.8 bits), Expect = 8.3e-37, Sum P(2) = 8.3e-37
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 372 QVPADEPEPLLKKMKFEDAPPPLMDT 397
Q+ A +P+P+ +K+ APP T
Sbjct: 587 QMKAQQPQPIQQKLL---APPAFFFT 609
Score = 39 (18.8 bits), Expect = 8.3e-37, Sum P(2) = 8.3e-37
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 238 KAKISSKDQSKSWSEDGDMEV---PHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEH 291
K K+S +Q ++ D+ + + +T + +SN D ++ DS +H
Sbjct: 1545 KPKVSINNQGGYGDDEDDIGLNDNKDDEKITNDNTTTTTSASSN-TDVIMKNDSGQH 1600
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 463 (168.0 bits), Expect = 6.8e-38, Sum P(4) = 6.8e-38
Identities = 108/293 (36%), Positives = 163/293 (55%)
Query: 1430 NSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVA--- 1486
++ DD+K+ L L +YQQ G+ WL L + GIL D+MGLGKT+Q A +A
Sbjct: 487 DAEFDDFKMPGFLFRKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLS 546
Query: 1487 -SDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGS-AQDRIAL 1544
S I R ++ + + P++I+CP+T++ W E + ++ L GS Q + L
Sbjct: 547 YSKIRTRGSNYRFKGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTQKKEKL 606
Query: 1545 -REQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHR 1603
R+ H ++ITSY +R D + + W+Y ILDEGH I+N + +T+A KQ + HR
Sbjct: 607 IRDIAHCHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHR 666
Query: 1604 LILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLA 1663
+ILSG+P+QNN+ +LWSLFDF+ PG LGT F + P+ S S +
Sbjct: 667 IILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKC 726
Query: 1664 MEALHKQVMPFLLRRTKDEV-LS-DLPEKIIQDRYCDLSAVQLKLYEKFSGSQ 1714
L + P+LLRR K +V +S LP+K Q +C L+ Q K+Y+ F S+
Sbjct: 727 ACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTEEQHKVYQNFIDSK 779
Score = 56 (24.8 bits), Expect = 6.8e-38, Sum P(4) = 6.8e-38
Identities = 22/93 (23%), Positives = 42/93 (45%)
Query: 166 LGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFD-RRFYTSA---------SAHNIQRLV 215
LG+DV +Q V +++ D +H+ + D + Y S S I +++
Sbjct: 100 LGVDVYDQDVLEQGVLRQVDSAIHEASRAAQLADVEKEYRSVLDDLTSCTTSLRQINKII 159
Query: 216 SSMVPSVISKRPSARELNMLKRKAKISSKDQSK 248
+ P + R R+L+ +KR+ K + + Q K
Sbjct: 160 EQLSPQAATNRNVNRKLDSVKRQ-KYNKEQQLK 191
Score = 48 (22.0 bits), Expect = 6.8e-38, Sum P(4) = 6.8e-38
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 1745 VFQALQYLLKLCSHPLLVLGDKSPESL 1771
+F L L K+C+HP L G P++L
Sbjct: 791 IFSGLVALRKICNHPDLFSG--GPKNL 815
Score = 40 (19.1 bits), Expect = 6.8e-38, Sum P(4) = 6.8e-38
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 680 EFDLNEVVRADDVGEGRDFQANPYM 704
E +L E GE +D++ NP +
Sbjct: 385 EEELEEAEGVKLTGEDKDYELNPML 409
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 445 (161.7 bits), Expect = 1.0e-37, P = 1.0e-37
Identities = 108/319 (33%), Positives = 175/319 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L+ YQ G+ W+ L L+GIL D+MGLGKT+Q +++ + + E++ N P L
Sbjct: 417 LKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLI-THLIEKKRQNG-----PFL 470
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN--VIITSYDVVRK 1563
+I P + + +W E E++ S++ + Y G Q R AL Q N V++T+Y+ + K
Sbjct: 471 VIVPLSTLTNWTMEFERWAP-SIVKIV-YKGPPQVRKALHPQVRHSNFQVLLTTYEYIIK 528
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKIT-VAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
D L ++ W Y I+DEGH +KN++SK+T + +RLIL+GTP+QNN+ +LW+L
Sbjct: 529 DRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALL 588
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+F++P + + F + P E +L + LHK + PFLLRR K +
Sbjct: 589 NFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKD 648
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V ++LP+K+ + C +S +Q KLY Q K+ M+ V E A +G+ + +
Sbjct: 649 VEAELPDKVEKVIRCQMSGLQQKLYY-----QMKKH--GMLYV-EDAKRGK-TGIKGLQN 699
Query: 1743 THVFQALQYLLKLCSHPLL 1761
T V Q L K+C+HP +
Sbjct: 700 T-VMQ----LKKICNHPFV 713
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 466 (169.1 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 121/352 (34%), Positives = 183/352 (51%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL++YQ +G+ W+ L L+GIL D+MGLGKT+Q ++ + E + N P
Sbjct: 725 TLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIGLITY-LMELKRLNG-----PY 778
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LII P + + +W +E++K+ S++ + Y G+ R +L Q K NV+IT+Y+ +
Sbjct: 779 LIIVPLSTLSNWVYELDKWAP-SIVK-IAYKGTPSMRRSLVPQLRSGKFNVLITTYEYII 836
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSL 1621
KD L ++ W Y I+DEGH +KN K+T + A RL+L+GTP+QN + +LW+L
Sbjct: 837 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWAL 896
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F+ + P A + + E +L + LHK + PFLLRR K
Sbjct: 897 LNFLLPTIFKSCSTFEQWFNAPF-AMTGERVDLNEEET-ILIIRRLHKVLRPFLLRRLKK 954
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV S LPEK+ CD+SA+Q LY G S E KG+G A
Sbjct: 955 EVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGS-----EKDKKGKGG-----A 1004
Query: 1742 STHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
T + + L K+C+HP + ES HL FP +L++AS
Sbjct: 1005 KT-LMNTIMQLKKICNHPYMF--QHIEESFAEHLG--FPNGIISGPDLYRAS 1051
Score = 37 (18.1 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 826 PVALPRKSHFKAAAKMRAVKLEN 848
P +LP KA +++A++L N
Sbjct: 368 PGSLPPDLRTKATVELKALRLLN 390
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 458 (166.3 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 120/352 (34%), Positives = 185/352 (52%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MGLGKT+Q A++ + E + N P
Sbjct: 730 TLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRLNG-----PY 783
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LII P + + +W +E +K+ S++ + Y G+ R +L Q K NV++T+Y+ +
Sbjct: 784 LIIVPLSTLSNWTYEFDKWAP-SVVK-ISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYII 841
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSL 1621
KD L ++ W Y I+DEGH +KN K+T + A R++L+GTP+QN + +LW+L
Sbjct: 842 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 901
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F+ + P A + + E +L + LHK + PFLLRR K
Sbjct: 902 LNFLLPTIFKSCSTFEQWFNAPF-AMTGERVDLNEEET-ILIIRRLHKVLRPFLLRRLKK 959
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV S LPEK+ CD+SA+Q LY QAK + + E KG+G A
Sbjct: 960 EVESQLPEKVEYVIKCDMSALQKILYRHM---QAKGIL--LTDGSEKDKKGKGG-----A 1009
Query: 1742 STHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
T + + L K+C+HP + ES HL + +EL++AS
Sbjct: 1010 KT-LMNTIMQLRKICNHPYMF--QHIEESFAEHLG--YSNGVINGAELYRAS 1056
Score = 44 (20.5 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 17/86 (19%), Positives = 40/86 (46%)
Query: 514 LDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQ-MQRRPEWE------ 566
LD + VS++ + ET Q + + + + ++ Y + + R E +
Sbjct: 669 LDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLIN 728
Query: 567 --IRHGSLLGIKYLVAVRQEMLHGLL 590
++H L G++++V++ L+G+L
Sbjct: 729 GTLKHYQLQGLEWMVSLYNNNLNGIL 754
Score = 37 (18.1 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 826 PVALPRKSHFKAAAKMRAVKLEN 848
P +LP KA +++A++L N
Sbjct: 372 PGSLPPDLRTKATVELKALRLLN 394
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 458 (166.3 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 120/352 (34%), Positives = 185/352 (52%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MGLGKT+Q A++ + E + N P
Sbjct: 705 TLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRLNG-----PY 758
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LII P + + +W +E +K+ S++ + Y G+ R +L Q K NV++T+Y+ +
Sbjct: 759 LIIVPLSTLSNWTYEFDKWAP-SVVK-ISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYII 816
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSL 1621
KD L ++ W Y I+DEGH +KN K+T + A R++L+GTP+QN + +LW+L
Sbjct: 817 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 876
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F+ + P A + + E +L + LHK + PFLLRR K
Sbjct: 877 LNFLLPTIFKSCSTFEQWFNAPF-AMTGERVDLNEEET-ILIIRRLHKVLRPFLLRRLKK 934
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV S LPEK+ CD+SA+Q LY QAK + + E KG+G A
Sbjct: 935 EVESQLPEKVEYVIKCDMSALQKILYRHM---QAKGIL--LTDGSEKDKKGKGG-----A 984
Query: 1742 STHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
T + + L K+C+HP + ES HL + +EL++AS
Sbjct: 985 KT-LMNTIMQLRKICNHPYMF--QHIEESFAEHLG--YSNGVINGAELYRAS 1031
Score = 44 (20.5 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 17/86 (19%), Positives = 40/86 (46%)
Query: 514 LDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQ-MQRRPEWE------ 566
LD + VS++ + ET Q + + + + ++ Y + + R E +
Sbjct: 644 LDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLIN 703
Query: 567 --IRHGSLLGIKYLVAVRQEMLHGLL 590
++H L G++++V++ L+G+L
Sbjct: 704 GTLKHYQLQGLEWMVSLYNNNLNGIL 729
Score = 37 (18.1 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 826 PVALPRKSHFKAAAKMRAVKLEN 848
P +LP KA +++A++L N
Sbjct: 347 PGSLPPDLRTKATVELKALRLLN 369
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 458 (166.3 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 120/352 (34%), Positives = 185/352 (52%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MGLGKT+Q A++ + E + N P
Sbjct: 707 TLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRLNG-----PY 760
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LII P + + +W +E +K+ S++ + Y G+ R +L Q K NV++T+Y+ +
Sbjct: 761 LIIVPLSTLSNWTYEFDKWAP-SVVK-ISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYII 818
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSL 1621
KD L ++ W Y I+DEGH +KN K+T + A R++L+GTP+QN + +LW+L
Sbjct: 819 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 878
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F+ + P A + + E +L + LHK + PFLLRR K
Sbjct: 879 LNFLLPTIFKSCSTFEQWFNAPF-AMTGERVDLNEEET-ILIIRRLHKVLRPFLLRRLKK 936
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV S LPEK+ CD+SA+Q LY QAK + + E KG+G A
Sbjct: 937 EVESQLPEKVEYVIKCDMSALQKILYRHM---QAKGIL--LTDGSEKDKKGKGG-----A 986
Query: 1742 STHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
T + + L K+C+HP + ES HL + +EL++AS
Sbjct: 987 KT-LMNTIMQLRKICNHPYMF--QHIEESFAEHLG--YSNGVINGAELYRAS 1033
Score = 44 (20.5 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 17/86 (19%), Positives = 40/86 (46%)
Query: 514 LDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQ-MQRRPEWE------ 566
LD + VS++ + ET Q + + + + ++ Y + + R E +
Sbjct: 646 LDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLIN 705
Query: 567 --IRHGSLLGIKYLVAVRQEMLHGLL 590
++H L G++++V++ L+G+L
Sbjct: 706 GTLKHYQLQGLEWMVSLYNNNLNGIL 731
Score = 37 (18.1 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 826 PVALPRKSHFKAAAKMRAVKLEN 848
P +LP KA +++A++L N
Sbjct: 349 PGSLPPDLRTKATVELKALRLLN 371
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 458 (166.3 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 120/352 (34%), Positives = 185/352 (52%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MGLGKT+Q A++ + E + N P
Sbjct: 707 TLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRLNG-----PY 760
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LII P + + +W +E +K+ S++ + Y G+ R +L Q K NV++T+Y+ +
Sbjct: 761 LIIVPLSTLSNWTYEFDKWAP-SVVK-ISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYII 818
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSL 1621
KD L ++ W Y I+DEGH +KN K+T + A R++L+GTP+QN + +LW+L
Sbjct: 819 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 878
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F+ + P A + + E +L + LHK + PFLLRR K
Sbjct: 879 LNFLLPTIFKSCSTFEQWFNAPF-AMTGERVDLNEEET-ILIIRRLHKVLRPFLLRRLKK 936
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV S LPEK+ CD+SA+Q LY QAK + + E KG+G A
Sbjct: 937 EVESQLPEKVEYVIKCDMSALQKILYRHM---QAKGIL--LTDGSEKDKKGKGG-----A 986
Query: 1742 STHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
T + + L K+C+HP + ES HL + +EL++AS
Sbjct: 987 KT-LMNTIMQLRKICNHPYMF--QHIEESFAEHLG--YSNGVINGAELYRAS 1033
Score = 44 (20.5 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 17/86 (19%), Positives = 40/86 (46%)
Query: 514 LDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQ-MQRRPEWE------ 566
LD + VS++ + ET Q + + + + ++ Y + + R E +
Sbjct: 646 LDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLIN 705
Query: 567 --IRHGSLLGIKYLVAVRQEMLHGLL 590
++H L G++++V++ L+G+L
Sbjct: 706 GTLKHYQLQGLEWMVSLYNNNLNGIL 731
Score = 37 (18.1 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 826 PVALPRKSHFKAAAKMRAVKLEN 848
P +LP KA +++A++L N
Sbjct: 349 PGSLPPDLRTKATVELKALRLLN 371
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 458 (166.3 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 120/352 (34%), Positives = 185/352 (52%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MGLGKT+Q A++ + E + N P
Sbjct: 728 TLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRLNG-----PY 781
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LII P + + +W +E +K+ S++ + Y G+ R +L Q K NV++T+Y+ +
Sbjct: 782 LIIVPLSTLSNWTYEFDKWAP-SVVK-ISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYII 839
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSL 1621
KD L ++ W Y I+DEGH +KN K+T + A R++L+GTP+QN + +LW+L
Sbjct: 840 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 899
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F+ + P A + + E +L + LHK + PFLLRR K
Sbjct: 900 LNFLLPTIFKSCSTFEQWFNAPF-AMTGERVDLNEEET-ILIIRRLHKVLRPFLLRRLKK 957
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV S LPEK+ CD+SA+Q LY QAK + + E KG+G A
Sbjct: 958 EVESQLPEKVEYVIKCDMSALQKILYRHM---QAKGIL--LTDGSEKDKKGKGG-----A 1007
Query: 1742 STHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
T + + L K+C+HP + ES HL + +EL++AS
Sbjct: 1008 KT-LMNTIMQLRKICNHPYMF--QHIEESFAEHLG--YSNGVINGAELYRAS 1054
Score = 44 (20.5 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 17/86 (19%), Positives = 40/86 (46%)
Query: 514 LDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQ-MQRRPEWE------ 566
LD + VS++ + ET Q + + + + ++ Y + + R E +
Sbjct: 667 LDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLIN 726
Query: 567 --IRHGSLLGIKYLVAVRQEMLHGLL 590
++H L G++++V++ L+G+L
Sbjct: 727 GTLKHYQLQGLEWMVSLYNNNLNGIL 752
Score = 37 (18.1 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 826 PVALPRKSHFKAAAKMRAVKLEN 848
P +LP KA +++A++L N
Sbjct: 370 PGSLPPDLRTKATVELKALRLLN 392
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 439 (159.6 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 101/290 (34%), Positives = 166/290 (57%)
Query: 1422 QFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQA 1481
+ ++LL I + + L TLR YQQ GI WL +L++ +L DDMGLGK++Q
Sbjct: 427 ELFQKLLHIGDIPKVDVPSSLHATLRPYQQHGIEWLLYLRKLGFGALLADDMGLGKSIQT 486
Query: 1482 SAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDR 1541
+ I E N+++ P+LI+ P++++G+W E E+F +L L Y +
Sbjct: 487 ITYLLY-IKE----NNLQT-GPALIVAPTSVLGNWQKEFERFAP-NLRVQLHYGSNRAKG 539
Query: 1542 IALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAA 1601
+ ++ +V++TSY + + D + L L W+ ILDE IKN +K + AV+ L+A
Sbjct: 540 ESFKDFLQSADVVLTSYALAQLDEEELSTLCWDAVILDEAQNIKNPHTKQSKAVRNLQAN 599
Query: 1602 HRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGV 1661
H++ L+GTP++N + +LWS+FDF+ G+LG+ QFQ + P+ KD + G
Sbjct: 600 HKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRFVSPI---------EKDRDEGK 650
Query: 1662 LAMEALHKQVMPFLLRRTK-DEVLS-DLPEKIIQDRYCDLSAVQLKLYEK 1709
+ + + + + PFLLRRTK D+ ++ +LP+K Q YC L+ Q LYE+
Sbjct: 651 I--QQVQRFISPFLLRRTKKDQTVALNLPDKQEQKAYCPLTGEQASLYEQ 698
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 458 (166.3 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 120/352 (34%), Positives = 185/352 (52%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MGLGKT+Q A++ + E + N P
Sbjct: 723 TLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRLNG-----PY 776
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LII P + + +W +E +K+ S++ + Y G+ R +L Q K NV++T+Y+ +
Sbjct: 777 LIIVPLSTLSNWTYEFDKWAP-SVVK-ISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYII 834
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSL 1621
KD L ++ W Y I+DEGH +KN K+T + A R++L+GTP+QN + +LW+L
Sbjct: 835 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 894
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F+ + P A + + E +L + LHK + PFLLRR K
Sbjct: 895 LNFLLPTIFKSCSTFEQWFNAPF-AMTGERVDLNEEET-ILIIRRLHKVLRPFLLRRLKK 952
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV S LPEK+ CD+SA+Q LY QAK + + E KG+G A
Sbjct: 953 EVESQLPEKVEYVIKCDMSALQKILYRHM---QAKGIL--LTDGSEKDKKGKGG-----A 1002
Query: 1742 STHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
T + + L K+C+HP + ES HL + +EL++AS
Sbjct: 1003 KT-LMNTIMQLRKICNHPYMF--QHIEESFAEHLG--YSNGVINGAELYRAS 1049
Score = 44 (20.5 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 17/86 (19%), Positives = 40/86 (46%)
Query: 514 LDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQ-MQRRPEWE------ 566
LD + VS++ + ET Q + + + + ++ Y + + R E +
Sbjct: 662 LDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLIN 721
Query: 567 --IRHGSLLGIKYLVAVRQEMLHGLL 590
++H L G++++V++ L+G+L
Sbjct: 722 GTLKHYQLQGLEWMVSLYNNNLNGIL 747
Score = 37 (18.1 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 826 PVALPRKSHFKAAAKMRAVKLEN 848
P +LP KA +++A++L N
Sbjct: 365 PGSLPPDLRTKATVELKALRLLN 387
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 458 (166.3 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 120/352 (34%), Positives = 185/352 (52%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MGLGKT+Q A++ + E + N P
Sbjct: 730 TLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRLNG-----PY 783
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LII P + + +W +E +K+ S++ + Y G+ R +L Q K NV++T+Y+ +
Sbjct: 784 LIIVPLSTLSNWTYEFDKWAP-SVVK-ISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYII 841
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSL 1621
KD L ++ W Y I+DEGH +KN K+T + A R++L+GTP+QN + +LW+L
Sbjct: 842 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 901
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F+ + P A + + E +L + LHK + PFLLRR K
Sbjct: 902 LNFLLPTIFKSCSTFEQWFNAPF-AMTGERVDLNEEET-ILIIRRLHKVLRPFLLRRLKK 959
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV S LPEK+ CD+SA+Q LY QAK + + E KG+G A
Sbjct: 960 EVESQLPEKVEYVIKCDMSALQKILYRHM---QAKGIL--LTDGSEKDKKGKGG-----A 1009
Query: 1742 STHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
T + + L K+C+HP + ES HL + +EL++AS
Sbjct: 1010 KT-LMNTIMQLRKICNHPYMF--QHIEESFAEHLG--YSNGVINGAELYRAS 1056
Score = 44 (20.5 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 17/86 (19%), Positives = 40/86 (46%)
Query: 514 LDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQ-MQRRPEWE------ 566
LD + VS++ + ET Q + + + + ++ Y + + R E +
Sbjct: 669 LDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLIN 728
Query: 567 --IRHGSLLGIKYLVAVRQEMLHGLL 590
++H L G++++V++ L+G+L
Sbjct: 729 GTLKHYQLQGLEWMVSLYNNNLNGIL 754
Score = 37 (18.1 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 826 PVALPRKSHFKAAAKMRAVKLEN 848
P +LP KA +++A++L N
Sbjct: 372 PGSLPPDLRTKATVELKALRLLN 394
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 458 (166.3 bits), Expect = 3.4e-37, Sum P(3) = 3.4e-37
Identities = 120/352 (34%), Positives = 185/352 (52%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MGLGKT+Q A++ + E + N P
Sbjct: 707 TLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRLNG-----PY 760
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LII P + + +W +E +K+ S++ + Y G+ R +L Q K NV++T+Y+ +
Sbjct: 761 LIIVPLSTLSNWTYEFDKWAP-SVVK-ISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYII 818
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSL 1621
KD L ++ W Y I+DEGH +KN K+T + A R++L+GTP+QN + +LW+L
Sbjct: 819 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 878
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F+ + P A + + E +L + LHK + PFLLRR K
Sbjct: 879 LNFLLPTIFKSCSTFEQWFNAPF-AMTGERVDLNEEET-ILIIRRLHKVLRPFLLRRLKK 936
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV S LPEK+ CD+SA+Q LY QAK + + E KG+G A
Sbjct: 937 EVESQLPEKVEYVIKCDMSALQKILYRHM---QAKGIL--LTDGSEKDKKGKGG-----A 986
Query: 1742 STHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
T + + L K+C+HP + ES HL + +EL++AS
Sbjct: 987 KT-LMNTIMQLRKICNHPYMF--QHIEESFAEHLG--YSNGVINGAELYRAS 1033
Score = 51 (23.0 bits), Expect = 3.4e-37, Sum P(3) = 3.4e-37
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 224 SKRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAV 283
SKR + RE M ++ K +Q + + +VP A PK + G N +
Sbjct: 401 SKRQTLREARMTEKLEKQQKIEQERKRRQKH--QVPGALMGRLPKQATGWSQNHLRKAGF 458
Query: 284 LDEDSSEHEGDGLW 297
L+++ G+G W
Sbjct: 459 LEQNP---RGEGTW 469
Score = 44 (20.5 bits), Expect = 3.4e-37, Sum P(3) = 3.4e-37
Identities = 17/86 (19%), Positives = 40/86 (46%)
Query: 514 LDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQ-MQRRPEWE------ 566
LD + VS++ + ET Q + + + + ++ Y + + R E +
Sbjct: 646 LDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLIN 705
Query: 567 --IRHGSLLGIKYLVAVRQEMLHGLL 590
++H L G++++V++ L+G+L
Sbjct: 706 GTLKHYQLQGLEWMVSLYNNNLNGIL 731
Score = 37 (18.1 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 826 PVALPRKSHFKAAAKMRAVKLEN 848
P +LP KA +++A++L N
Sbjct: 348 PGSLPPDLRTKATVELKALRLLN 370
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 442 (160.7 bits), Expect = 3.6e-37, P = 3.6e-37
Identities = 119/351 (33%), Positives = 188/351 (53%)
Query: 1440 TELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIE 1499
T L L+ YQ +G+NWL L ++GIL D+MGLGKT+Q+ +++A +AE +
Sbjct: 792 TMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAY-LAE------VH 844
Query: 1500 EIH-PSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD-KH------ 1551
I P L+I P++ + +W EI KF V + L Y G+A+DR LR+ +D KH
Sbjct: 845 NIWGPFLVIAPASTLHNWQQEITKF--VPNIKVLPYWGNAKDRKILRKFWDRKHITYTKE 902
Query: 1552 ---NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSG 1608
+V++TSY +V DA Y ++ W Y ILDE IK+S+S ++ +RL+L+G
Sbjct: 903 SEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTG 962
Query: 1609 TPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH 1668
TPIQNN+ +LW+L F+MP + +F + K + + S + + + LH
Sbjct: 963 TPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQ-----LRRLH 1017
Query: 1669 KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES 1728
+ PF+LRR K V +L +K+ +D +CDL+ Q LY + + +S M ++++
Sbjct: 1018 MILKPFMLRRVKKHVQQELGDKVEKDVFCDLTYRQRALY-----TNLRNRVSIMDLIEKA 1072
Query: 1729 ADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLV--LGDKSPESLLCHLSE 1777
A E + ST + + K+C+HP L KSP SL H +E
Sbjct: 1073 AVGDETD------STTLMNLVMQFRKVCNHPDLFERAETKSPFSL-AHFAE 1116
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 462 (167.7 bits), Expect = 7.0e-37, Sum P(3) = 7.0e-37
Identities = 124/360 (34%), Positives = 185/360 (51%)
Query: 1425 EQLLDNSHID---DYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQA 1481
E+L D S + +K+ L L +YQQ G+ WL L + GIL D+MGLGKT+Q
Sbjct: 478 EELSDESDTEFEEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQI 537
Query: 1482 SAIVA----SDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGS 1537
A +A S I R ++ + + P++I+CP+T++ W E + ++ L GS
Sbjct: 538 IAFLAGLSYSKIRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAILHETGS 597
Query: 1538 -AQDRIAL-REQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAV 1595
++ L RE H ++ITSY +R D + W+Y ILDEGH I+N + +T+A
Sbjct: 598 YTNKKVKLIREIASCHGILITSYSYIRLMQDNIHSYDWHYVILDEGHKIRNPNAAVTLAC 657
Query: 1596 KQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAK 1655
KQ + HR+ILSG+P+QNN+ +LWSLFDF+ PG LGT F + P+ S S
Sbjct: 658 KQFRTPHRIILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPV 717
Query: 1656 DAEAGVLAMEALHKQVMPFLLRRTKDEV-LS-DLPEKIIQDRYCDLSAVQLKLYEKFSGS 1713
+ L + P+LLRR K +V +S LP+K Q +C L+ Q ++Y+ F S
Sbjct: 718 QVKTAYKCACVLRDAINPYLLRRMKADVKMSLSLPDKNEQVLFCRLTDEQRQVYQNFIDS 777
Query: 1714 QAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLC 1773
+ E+ ++ D VF L L K+C+HP L G P+ L C
Sbjct: 778 K---EVYQILNGD----------------MQVFSGLVALRKICNHPDLFSG--GPKILKC 816
Score = 50 (22.7 bits), Expect = 7.0e-37, Sum P(3) = 7.0e-37
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 158 QKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFD-RRFYTSA---------S 207
Q LK LG+DV +Q V +I+ D +++ N D + Y S S
Sbjct: 91 QAAELKG-LGVDVYDQEVLEQGVIQQVDNAINEANRATKIADAEKEYQSVLDDLRSCTTS 149
Query: 208 AHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSK 248
I +++ + P + + R+L+ +KR+ K + + Q K
Sbjct: 150 LKQIDKIIEQLSPQATNNKDINRKLDSVKRQ-KYNKEQQLK 189
Score = 37 (18.1 bits), Expect = 7.0e-37, Sum P(3) = 7.0e-37
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 244 KDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEHE 292
K + K W +DGD + + + D S A+ + DE +E E
Sbjct: 442 KRKVKRWRDDGDEDYYKQRLRKWQRERLKDKERS-VAEELSDESDTEFE 489
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 452 (164.2 bits), Expect = 8.4e-37, Sum P(3) = 8.4e-37
Identities = 120/331 (36%), Positives = 185/331 (55%)
Query: 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH 1502
+++L+ YQQ GINWL L + K+ IL DDMGLGKT Q V S A + I E
Sbjct: 569 EISLKDYQQTGINWLNLLYQNKMSCILADDMGLGKTCQ----VISFFAYLK---QINEPG 621
Query: 1503 PSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD----KHNVIITSY 1558
P L++ PS+ + +W E +KF + Y GS Q+R LR+ + K++VI+T+Y
Sbjct: 622 PHLVVVPSSTLENWLREFQKFAPA--LKIEPYYGSLQEREELRDILERNAGKYDVIVTTY 679
Query: 1559 DVV---RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNI 1615
++ + D +L +N + DEGH++KNS S+ + +++A RL+L+GTP+QNN+
Sbjct: 680 NLAAGNKYDVSFLKNRNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNL 739
Query: 1616 TDLWSLFDFLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH--KQVM 1672
+L SL +F+MP F+ + F A + + D+K +LA EA+ K +M
Sbjct: 740 KELMSLLEFIMPNLFISKKESFDAIFKQRAKTTDDNK-----NHNPLLAQEAITRAKTMM 794
Query: 1673 -PFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE-SAD 1730
PF+LRR KD+VL LP K +YC+L+A+Q K+Y+K Q E M+K E D
Sbjct: 795 KPFILRRRKDQVLKHLPPKHTHIQYCELNAIQKKIYDK--EIQIVLEHKRMIKDGELPKD 852
Query: 1731 KGEGNNVSAKASTHVFQALQYLLKLCSHPLL 1761
E + + + +S ++ AL+ K HPLL
Sbjct: 853 AKEKSKLQSSSSKNLIMALR---KASLHPLL 880
Score = 51 (23.0 bits), Expect = 8.4e-37, Sum P(3) = 8.4e-37
Identities = 45/174 (25%), Positives = 72/174 (41%)
Query: 848 NDSSGSVDLPQERNGD--TSTNSVKITVGSDLEMSVTNTRV-----VTASALGIFASK-L 899
ND V +P+ + S++ +K T + + SV + R + + G SK L
Sbjct: 7 NDEDDVVQVPETSSPTKVASSSPLKPTSPTVPDASVASLRSRFTFKPSDPSEGAHTSKPL 66
Query: 900 HEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQW 959
GS + + L FS Q V A+ FK S L + L L + W
Sbjct: 67 PSGSPEVALVNLAREFPDFS--QTLVQAV-----FKS-NSFNLQSARERLTRLRQQRQNW 118
Query: 960 LLDLLAC---SDPTYPTKDSLLPYAE---LSRTYGKMRNEASQLLRAMETSSMF 1007
+ A S+ P K SL P A LS +G + N++S++ A + +S+F
Sbjct: 119 TWNKNASPKKSETPPPVKKSL-PLANTGRLSSIHGNINNKSSKITVAKQKTSIF 171
Score = 46 (21.3 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 146 DNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGN 196
+N+ N R+R A N RL LD Q + + I+ ++ K +S+G+
Sbjct: 333 ENASNKRKRRAAASANESERL-LDKITQSIRGYNAIES---VIKKCSSYGD 379
Score = 40 (19.1 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 13/70 (18%), Positives = 27/70 (38%)
Query: 227 PSARELNMLKR--KAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVL 284
P RE ++ K K+ + E D E+P +++ + +N + D
Sbjct: 462 PVERETKRIRNTTKPKVVEDEDDDVDLEAIDDELPQSEHEDDDYEEEDEDYNDEEEDVEY 521
Query: 285 DEDSSEHEGD 294
D+ + + D
Sbjct: 522 DDGDDDDDDD 531
Score = 39 (18.8 bits), Expect = 8.4e-37, Sum P(3) = 8.4e-37
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 1166 MEIIDDQDFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFIS 1205
++ I+D D + + +A ++A S + F++
Sbjct: 284 LQFINDSDIVDLSDLSDTTMHKAQLIASHRPYSSLNAFVN 323
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 444 (161.4 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 107/322 (33%), Positives = 177/322 (54%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MGLGKT+Q +++ + I ER+ +N P
Sbjct: 536 TLKEYQMKGLQWMISLYNNNLNGILADEMGLGKTIQTISLI-THIIERKRNNG-----PF 589
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE--QFDKHNVIITSYDVVR 1562
L+I P + + +W E EK+ +S + Y G R ++ ++ V++T+Y+ +
Sbjct: 590 LVIVPLSTLTNWNLEFEKW--APSVSRIVYKGPPNARKQQQQNIRWGNFQVLLTTYEYII 647
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAA-HRLILSGTPIQNNITDLWSL 1621
KD L ++ W + I+DEGH +KN++SK++ + Q + +RLIL+GTP+QNN+ +LW+L
Sbjct: 648 KDRPILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPLQNNLPELWAL 707
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+F++P + + F + P E +L + LHK + PFLLRR K
Sbjct: 708 LNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMDLTEEEQLLVIRRLHKVLRPFLLRRLKK 767
Query: 1682 EVLSDLPEKIIQDRY--CDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSA 1739
+V DLP+K Q+R C SA+Q KL ++ + + MV D G+G V
Sbjct: 768 DVEKDLPDK--QERVIKCRFSALQAKLNKQLATH------NKMVVSD-----GKGGKVGM 814
Query: 1740 KASTHVFQALQYLLKLCSHPLL 1761
+ +++ L L KLC+HP +
Sbjct: 815 RGLSNM---LMQLRKLCNHPFV 833
Score = 50 (22.7 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 138 GQEYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDL-IVHKLNSHGN 196
GQ D I + N + +Q R+ + E++ + +D D+D I + G
Sbjct: 448 GQAKDSRISHLLNQTDGFLKQLAASVRQQQRNQAERYGEEHDFDDDDDEDIASGSDEEGE 507
Query: 197 GFDRRFYTSASAHNIQRLVSSMVPSVI 223
G R+ A AH I+ ++ PS++
Sbjct: 508 G-RRKIDYYAVAHRIKEEITEQ-PSIL 532
Score = 49 (22.3 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 24/117 (20%), Positives = 51/117 (43%)
Query: 968 DPTYPTKDSLLPYAELSRTYGKMRNEASQL--LRAM----ETSSMFTEMLSANEIDVE-- 1019
DP Y +LL + + + K R A Q L+A + S E ++ N ++
Sbjct: 46 DPEYLKAHNLLSAVQRQQAFQKQRQLAQQQQQLQAQRQQQQNGSSTQEAVAPNGVNNRAN 105
Query: 1020 -SLSADNAISFASKLQLLG--SNSDGSESLSRQM-LDDIESIKQRMLTTSGYLKCVQ 1072
S +++NA+ LG ++ G+ + S D +++++ +++ K +Q
Sbjct: 106 PSATSNNAVQDVGSASALGQQNHQKGAPAASGSFSADQLQTLRNQIMAFKMLTKNLQ 162
Score = 41 (19.5 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 18/64 (28%), Positives = 25/64 (39%)
Query: 981 AELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEID---VESLSADNAISFASKLQLLG 1037
AEL T + R A +L R M E ++ + L A A + L+LLG
Sbjct: 389 AELRETASQQRQRAGKLGRMMLQHHQHMEREEQRRVERTAKQRLQALKANDEETYLKLLG 448
Query: 1038 SNSD 1041
D
Sbjct: 449 QAKD 452
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 441 (160.3 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 102/290 (35%), Positives = 166/290 (57%)
Query: 1425 EQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAI 1484
++L D + + L TLR YQ +G+NWL FL+ ++L+GIL DDMGLGKT+Q A
Sbjct: 641 DKLKDFQQVTTIPVPEGLNATLRTYQHQGLNWLQFLREYQLNGILADDMGLGKTIQTLAH 700
Query: 1485 VASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIAL 1544
+ + + R + P LI+ P++++ +WA EI+KF L + + ++
Sbjct: 701 LLIEKQQGRLTK------PILIVAPTSVIFNWANEIDKFTP-QLSYQVLHGNKRHEQFGC 753
Query: 1545 REQFDKH----NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKA 1600
E + ++IITSY ++ KD + + Y +LDE H IKN+K+K+ A LKA
Sbjct: 754 LEGVENGENQVDIIITSYALITKDLAHYTDRKFYYLVLDEAHYIKNTKTKLYQAFLTLKA 813
Query: 1601 AHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAG 1660
H+L L+GTP++N++ + W+ F+FL+PGFLG +RQF + P+ + + K
Sbjct: 814 QHKLCLTGTPMENHLGEFWAQFNFLLPGFLGGQRQFTKLFRTPI--EKHGELERK----- 866
Query: 1661 VLAMEALHKQVMPFLLRRTKDEVLSDLPEK--IIQDRYCDLSAVQLKLYE 1708
+ L++++ PF+LRRTKD++ ++LP K IIQ + Q +LYE
Sbjct: 867 ----QLLNQRIKPFILRRTKDKIATELPPKTEIIQT--LRIEGKQAELYE 910
Score = 48 (22.0 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 249 SWSEDGDMEVPHAQNVT-TPKGSCGDPFNSNKADAVLDEDSSEHEG 293
++S G++ PH +NVT TP +S DA D DS+ G
Sbjct: 359 NFSYQGNLVNPHDENVTITPSNVTKLSIDS---DAQSDADSNIESG 401
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 441 (160.3 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 102/290 (35%), Positives = 166/290 (57%)
Query: 1425 EQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAI 1484
++L D + + L TLR YQ +G+NWL FL+ ++L+GIL DDMGLGKT+Q A
Sbjct: 641 DKLKDFQQVTTIPVPEGLNATLRTYQHQGLNWLQFLREYQLNGILADDMGLGKTIQTLAH 700
Query: 1485 VASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIAL 1544
+ + + R + P LI+ P++++ +WA EI+KF L + + ++
Sbjct: 701 LLIEKQQGRLTK------PILIVAPTSVIFNWANEIDKFTP-QLSYQVLHGNKRHEQFGC 753
Query: 1545 REQFDKH----NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKA 1600
E + ++IITSY ++ KD + + Y +LDE H IKN+K+K+ A LKA
Sbjct: 754 LEGVENGENQVDIIITSYALITKDLAHYTDRKFYYLVLDEAHYIKNTKTKLYQAFLTLKA 813
Query: 1601 AHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAG 1660
H+L L+GTP++N++ + W+ F+FL+PGFLG +RQF + P+ + + K
Sbjct: 814 QHKLCLTGTPMENHLGEFWAQFNFLLPGFLGGQRQFTKLFRTPI--EKHGELERK----- 866
Query: 1661 VLAMEALHKQVMPFLLRRTKDEVLSDLPEK--IIQDRYCDLSAVQLKLYE 1708
+ L++++ PF+LRRTKD++ ++LP K IIQ + Q +LYE
Sbjct: 867 ----QLLNQRIKPFILRRTKDKIATELPPKTEIIQT--LRIEGKQAELYE 910
Score = 48 (22.0 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 249 SWSEDGDMEVPHAQNVT-TPKGSCGDPFNSNKADAVLDEDSSEHEG 293
++S G++ PH +NVT TP +S DA D DS+ G
Sbjct: 359 NFSYQGNLVNPHDENVTITPSNVTKLSIDS---DAQSDADSNIESG 401
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 453 (164.5 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 114/331 (34%), Positives = 182/331 (54%)
Query: 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
L TL+ YQ +G+NWLA L ++GIL D+MGLGKT+Q+ +++A +AE +++I
Sbjct: 702 LACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAH-LAE---NHNIWG- 756
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN--------- 1552
P L++ P++ + +W EI KF+ L Y G+A DR LR+ +D+ N
Sbjct: 757 -PFLVVTPASTLHNWVNEISKFLPQ--FKILPYWGNANDRKVLRKFWDRKNLRYNKNAPF 813
Query: 1553 -VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPI 1611
V++TSY +V DA+YL ++ W Y ILDE IK+S+S + +RL+L+GTPI
Sbjct: 814 HVMVTSYQMVVTDANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPI 873
Query: 1612 QNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQV 1671
QN++ +LW+L F+MP + +F + K + + ++ + + LH +
Sbjct: 874 QNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIESHAEANTKLNQQQ-----LRRLHMIL 928
Query: 1672 MPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADK 1731
PF+LRR K V S+L +KI D CDL+ Q KLY+ K +IS+ E+A
Sbjct: 929 KPFMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKLYQVL-----KSQISTNYDAIENAAT 983
Query: 1732 GEGNNVSAKAS---THVFQALQYLLKLCSHP 1759
+ + SA S ++ A+ K+C+HP
Sbjct: 984 NDSTSNSASNSGSDQNLINAVMQFRKVCNHP 1014
Score = 47 (21.6 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 145 IDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSH-GNGFD---- 199
I+++K RER ++ LK +GLD + +D ND E KLN++ NG D
Sbjct: 389 INDAKRERER----EEALKNNVGLDGND--LD-NDEDGSESHKRRKLNNNTANGADDANK 441
Query: 200 RRFYT 204
R+F T
Sbjct: 442 RKFNT 446
Score = 45 (20.9 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 1409 GL-TEGLSRNAEDAQFLEQLLDNSHIDDYK 1437
GL T G+ NA++A+ +++ DN++ +K
Sbjct: 449 GLPTYGMKMNAKEARAIQRHYDNTYTTIWK 478
Score = 40 (19.1 bits), Expect = 8.2e-34, Sum P(5) = 8.2e-34
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 276 NSNKADAVLDEDSSEHEGD 294
N+N +D + ++D+ E E D
Sbjct: 129 NANLSDIINEKDADEDEED 147
Score = 40 (19.1 bits), Expect = 8.2e-34, Sum P(5) = 8.2e-34
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 251 SEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEHEGD 294
+EDG+ + + D N N+ D D D E G+
Sbjct: 216 NEDGNNGEDEDNDNDNENNNDNDNDNENENDNDSDNDDEEENGE 259
Score = 38 (18.4 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 116 SVSFTSFDLNKVLEFGALLASGGQEYDIAIDNSKNPRERLARQKQNLKRRL 166
+VS + K ++ AL + + I DN + + RL R +N L
Sbjct: 608 NVSSNDSESQKNIDISALAPNKNDFHAIDFDNENDEQLRL-RAAENASNAL 657
Score = 38 (18.4 bits), Expect = 8.2e-34, Sum P(5) = 8.2e-34
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1036 LGSNSDGSESLSRQMLDD 1053
L ++ DGSES R+ L++
Sbjct: 413 LDNDEDGSESHKRRKLNN 430
Score = 37 (18.1 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 352 EFKDKDSITMKREREIDLNVQVPADEPEPLLKKMK 386
+F D + + E E +LN Q P E +++ K
Sbjct: 666 QFDDHANAHEEEEEEDELNFQNPTSLGEITIEQPK 700
Score = 37 (18.1 bits), Expect = 8.2e-34, Sum P(5) = 8.2e-34
Identities = 6/30 (20%), Positives = 20/30 (66%)
Query: 357 DSITMKREREIDLNVQVPADEPEPLLKKMK 386
+S+++ ++I+ N+ + +D P+ + + +K
Sbjct: 312 NSLSLITSKKINKNITINSDRPKIVRELIK 341
Score = 37 (18.1 bits), Expect = 1.0e-33, Sum P(5) = 1.0e-33
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 1170 DDQDFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRG 1208
+D D GS + K++ + A G D + F +R G
Sbjct: 411 NDLDNDEDGSESHKRRKLNNNTANGADDANKRKFNTRHG 449
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 440 (159.9 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 101/294 (34%), Positives = 159/294 (54%)
Query: 1434 DDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVA----SDI 1489
+ +K+ L L +YQQ G+ W+ L + GIL D+MGLGKT+Q A +A S +
Sbjct: 472 EGFKIPGFLWKKLFKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKL 531
Query: 1490 AERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGS--AQDRIALREQ 1547
R ++ + P++I+CP+T++ W E + ++ L GS ++ + E
Sbjct: 532 KTRGSNYRYAGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHDTGSFTSKKEKLIPEI 591
Query: 1548 FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILS 1607
H ++ITSY +R DY+ + W+Y ILDEGH I+N + +T A KQ + HR ILS
Sbjct: 592 VASHGILITSYSYIRIMQDYIQRYDWHYVILDEGHKIRNPNAGVTTACKQFRTPHRFILS 651
Query: 1608 GTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL 1667
G+P+QNN+ +LWSLFDF+ PG LGT F + P+ + S + L
Sbjct: 652 GSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVL 711
Query: 1668 HKQVMPFLLRRTKDEVLSDL--PEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEI 1719
+ P+LLRR K +V ++L P+K Q +C L+ Q ++Y+ F S+ +I
Sbjct: 712 RDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLTEDQRQVYQTFLDSKEVYQI 765
Score = 57 (25.1 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 199 DRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSK 248
D R TSA H I +++ + P S + +R++ +KR+ + K K
Sbjct: 127 DVRSCTSALKH-INKILEQLTPHAASSKDISRKIESVKRQKENKEKQLKK 175
Score = 47 (21.6 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 1745 VFQALQYLLKLCSHPLLVLG 1764
VF L L K+C+HP L G
Sbjct: 772 VFSGLIALRKICNHPDLFTG 791
Score = 42 (19.8 bits), Expect = 6.9e-35, Sum P(3) = 6.9e-35
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 124 LNKVLEFGALLASGGQEYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKD 183
+NK+LE A+ ++ I++ K +E ++KQ K R + +D D+ K
Sbjct: 138 INKILEQLTPHAASSKDISRKIESVKRQKEN--KEKQLKKIRAKQKRLQALLDGEDIQKL 195
Query: 184 E-DLIV 188
E +L++
Sbjct: 196 EAELLI 201
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 449 (163.1 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
Identities = 107/347 (30%), Positives = 185/347 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L+ YQ G+ WL L L+GIL D+MGLGKT+Q A + S + ER ++ E P L
Sbjct: 624 LKEYQVTGLEWLISLYTRNLNGILADEMGLGKTVQTIAFI-SFLYERM---NVRE--PFL 677
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN--VIITSYDVVRK 1563
++ P + + +W E ++ + + Y G +R ++ V+ITS++ + K
Sbjct: 678 VVAPLSTISNWVSEFARWSPK--LHVIVYKGKQDERRETARTIPRNAFCVVITSFEYIIK 735
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFD 1623
D LG++ W Y I+DEGH IKN SK++V ++Q + +RL+L+GTP+QN++ +LW+L +
Sbjct: 736 DRKTLGRVHWIYIIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTPLQNDLGELWALLN 795
Query: 1624 FLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEV 1683
FL+P + FQ + P A + + + E+ ++ + LH+ + FLLRR K +V
Sbjct: 796 FLLPTIFNSADTFQNWFNAPFQAKGKNLINVNEEES-LIIINRLHQVLRFFLLRRLKSDV 854
Query: 1684 LSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAST 1743
S LP+K + C++SA+Q+ +Y E ++ +D + +G + K
Sbjct: 855 ESQLPDKKEKVIKCNMSALQIAMYRSLV------EYG-VLPIDPDSKEGRSGRLKMKGFN 907
Query: 1744 HVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELH 1790
++ + LQ K+C+HP L + L S F I++++H
Sbjct: 908 NIVKQLQ---KICNHPYLFKDEWDINEDLIRTSGKFDTMDQILTKMH 951
Score = 44 (20.5 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 836 KAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNT 884
K + RA +LE + + + + NG T+TN+ T + + T+T
Sbjct: 534 KEQTEKRARELEEELKQNEEQLNDHNG-TNTNNNNTTTTTTTTSTTTST 581
Score = 37 (18.1 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 848 NDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNT 884
N+++ + + N +TS N I ++ + TNT
Sbjct: 225 NNNNNNNNNNNNNNNNTSANGNNINNNNNNNNNTTNT 261
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 448 (162.8 bits), Expect = 3.7e-36, Sum P(2) = 3.7e-36
Identities = 117/352 (33%), Positives = 182/352 (51%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MG GKT+Q A++ + E + N P
Sbjct: 730 TLKHYQLQGLEWMVSLYNNNLNGILADEMGPGKTIQTIALITY-LMEHKGLNG-----PY 783
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LII P + + +W +E +K+ ++ + Y G+ R +L Q K N ++T+Y+ +
Sbjct: 784 LIIVPLSTLSNWTYEFDKWAPSAVK--ISYKGTPAMRRSLVPQLRSGKFNALLTTYEYII 841
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSL 1621
KD L ++ W Y I+DEGH +KN K+T + A R++L+GTP+QN + +LW+L
Sbjct: 842 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 901
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F+ + P A + + E +L + LHK + PFLLRR K
Sbjct: 902 LNFLLPTIFKSCSTFEQWFNAPF-AMTGERVDLNEEET-ILIIRRLHKVLRPFLLRRLKK 959
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV S LPEK+ CD+SA+Q LY QAK + + E KG+G A
Sbjct: 960 EVESQLPEKVEYVIKCDMSALQKILYRHM---QAKGIL--LTDGSEKDKKGKGG-----A 1009
Query: 1742 STHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
T + + L K+C+HP + ES HL + +EL++AS
Sbjct: 1010 KT-LMNTIMQLRKICNHPYMF--QHIEESFAEHLG--YSNGVINGAELYRAS 1056
Score = 43 (20.2 bits), Expect = 3.7e-36, Sum P(2) = 3.7e-36
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 567 IRHGSLLGIKYLVAVRQEMLHGLL 590
++H L G++++V++ L+G+L
Sbjct: 731 LKHYQLQGLEWMVSLYNNNLNGIL 754
Score = 37 (18.1 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 826 PVALPRKSHFKAAAKMRAVKLEN 848
P +LP KA +++A++L N
Sbjct: 372 PGSLPPDLRTKATVELKALRLLN 394
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 453 (164.5 bits), Expect = 4.8e-36, Sum P(5) = 4.8e-36
Identities = 105/290 (36%), Positives = 162/290 (55%)
Query: 1434 DDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVA----SDI 1489
+ +K+ L L +YQQ G+ WL L + GIL D+MGLGKT+Q A +A S I
Sbjct: 495 EGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKI 554
Query: 1490 AERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGS---AQDRIALRE 1546
R ++ E + P++I+CP+T++ W E + ++ L GS ++++ +R+
Sbjct: 555 RTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKL-IRD 613
Query: 1547 QFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLIL 1606
H ++ITSY +R D + + W+Y ILDEGH I+N + +T+A KQ + HR+IL
Sbjct: 614 VAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIIL 673
Query: 1607 SGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEA 1666
SG+P+QNN+ +LWSLFDF+ PG LGT F + P+ S S +
Sbjct: 674 SGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACV 733
Query: 1667 LHKQVMPFLLRRTKDEV-LS-DLPEKIIQDRYCDLSAVQLKLYEKFSGSQ 1714
L + P+LLRR K +V +S LP+K Q +C L+ Q K+Y+ F S+
Sbjct: 734 LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSK 783
Score = 56 (24.8 bits), Expect = 4.8e-36, Sum P(5) = 4.8e-36
Identities = 22/93 (23%), Positives = 42/93 (45%)
Query: 166 LGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFD-RRFYTSA---------SAHNIQRLV 215
LG+DV +Q V +++ D +H+ + D + Y S S I +++
Sbjct: 95 LGVDVYDQDVLEQGVLQQVDNAIHEASRASQLVDVEKEYRSVLDDLTSCTTSLRQINKII 154
Query: 216 SSMVPSVISKRPSARELNMLKRKAKISSKDQSK 248
+ P + R R+L+ +KR+ K + + Q K
Sbjct: 155 EQLSPQAATSRDINRKLDSVKRQ-KYNKEQQLK 186
Score = 47 (21.6 bits), Expect = 4.8e-36, Sum P(5) = 4.8e-36
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 1745 VFQALQYLLKLCSHPLLVLGDKSPESL 1771
+F L L K+C+HP L G P++L
Sbjct: 795 IFSGLIALRKICNHPDLFSG--GPKNL 819
Score = 43 (20.2 bits), Expect = 1.0e-34, Sum P(5) = 1.0e-34
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 258 VPHAQNVTTPKGSC--GDPFNSNKADAVLDEDSSEHEGDGLWPFRS 301
+PH+ T + C P ++N+ A+ E + E + FRS
Sbjct: 6 IPHSSQ--TQEQDCLQSQPVSNNEEMAIKQESGGDGEVEEYLSFRS 49
Score = 41 (19.5 bits), Expect = 4.8e-36, Sum P(5) = 4.8e-36
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 678 KQEFDLNEVVRADDVGEGRDFQANP 702
++E D E AD G+G D++ P
Sbjct: 382 EEEDDEVEGAEADLSGDGTDYELKP 406
Score = 38 (18.4 bits), Expect = 4.8e-36, Sum P(5) = 4.8e-36
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 819 DATKMFWPVALPRKSHFKAAAKMRAVKLENDSSGS 853
D + ++ L R + + K + +KLE+DS S
Sbjct: 455 DGDEDYYKQRLRRWNKLRLQDKEKRLKLEDDSEES 489
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 458 (166.3 bits), Expect = 7.3e-36, Sum P(3) = 7.3e-36
Identities = 120/352 (34%), Positives = 185/352 (52%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MGLGKT+Q A++ + E + N P
Sbjct: 697 TLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEHKRLNG-----PY 750
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LII P + + +W +E +K+ S++ + Y G+ R +L Q K NV++T+Y+ +
Sbjct: 751 LIIVPLSTLSNWTYEFDKWAP-SVVK-ISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYII 808
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSL 1621
KD L ++ W Y I+DEGH +KN K+T + A R++L+GTP+QN + +LW+L
Sbjct: 809 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 868
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F+ + P A + + E +L + LHK + PFLLRR K
Sbjct: 869 LNFLLPTIFKSCSTFEQWFNAPF-AMTGERVDLNEEET-ILIIRRLHKVLRPFLLRRLKK 926
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV S LPEK+ CD+SA+Q LY QAK + + E KG+G A
Sbjct: 927 EVESQLPEKVEYVIKCDMSALQKILYRHM---QAKGIL--LTDGSEKDKKGKGG-----A 976
Query: 1742 STHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
T + + L K+C+HP + ES HL + +EL++AS
Sbjct: 977 KT-LMNTIMQLRKICNHPYMF--QHIEESFAEHLG--YSNGVINGAELYRAS 1023
Score = 43 (20.2 bits), Expect = 7.3e-36, Sum P(3) = 7.3e-36
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 567 IRHGSLLGIKYLVAVRQEMLHGLL 590
++H L G++++V++ L+G+L
Sbjct: 698 LKHYQLQGLEWMVSLYNNNLNGIL 721
Score = 39 (18.8 bits), Expect = 7.3e-36, Sum P(3) = 7.3e-36
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 3 QQSSRLNR-LLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSL 45
++SSRL LLD S + + A+QI E AK D S+
Sbjct: 623 EESSRLEADEKILLDPNSEEVSE-KDAKQIIETAKQDVDDEYSM 665
Score = 38 (18.4 bits), Expect = 9.3e-36, Sum P(3) = 9.3e-36
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 155 LARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGN 196
L+ QN K+ LGL+ F + +I+ + I H++ N
Sbjct: 318 LSHLNQNFKKGLGLNPV--FGNSKRIIRLQARIAHRIQELEN 357
Score = 37 (18.1 bits), Expect = 3.9e-35, Sum P(3) = 3.9e-35
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 826 PVALPRKSHFKAAAKMRAVKLEN 848
P +LP KA +++A++L N
Sbjct: 359 PGSLPPDLRTKATVELKALRLLN 381
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 446 (162.1 bits), Expect = 9.3e-36, Sum P(2) = 9.3e-36
Identities = 107/321 (33%), Positives = 177/321 (55%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ G+ W+ L L+GIL D+MGLGKT+Q+ +++ + E + ++I P
Sbjct: 469 TLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITY-LYEVK-----KDIGPF 522
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN--VIITSYDVVR 1562
L+I P + + +W E EK+ SL +T+ Y G+ R +L+ Q N V++T+Y+ +
Sbjct: 523 LVIVPLSTITNWTLEFEKWAP-SL-NTIIYKGTPNQRHSLQHQIRVGNFDVLLTTYEYII 580
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-KAAHRLILSGTPIQNNITDLWSL 1621
KD L + W + I+DEGH +KN++SK++ + + +RLIL+GTP+QNN+ +LW+L
Sbjct: 581 KDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWAL 640
Query: 1622 FDFLMPGFLGTERQFQATYGKPLV-AARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTK 1680
+F++P + + F+ + P K + E +L + LHK + PFLLRR K
Sbjct: 641 LNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEET-LLIIRRLHKVLRPFLLRRLK 699
Query: 1681 DEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAK 1740
EV DLP+K+ + C LS +Q +LY++ K + E A KG ++ K
Sbjct: 700 KEVEKDLPDKVEKVIKCKLSGLQQQLYQQM----LKHNALFVGAGTEGATKGGIKGLNNK 755
Query: 1741 ASTHVFQALQYLLKLCSHPLL 1761
+ L K+C+HP +
Sbjct: 756 --------IMQLRKICNHPFV 768
Score = 39 (18.8 bits), Expect = 9.3e-36, Sum P(2) = 9.3e-36
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 854 VDLPQERNGDTSTNSVKITVGSDLEMSVT-NTRVVTASALGIFASKLHEGSIQFVIDP 910
+DLP +N +T+ V + +++S N + A +LG+ SK + + DP
Sbjct: 136 LDLPDTKNDNTTAIEVDYSEKKPIKISADFNAK---AKSLGL-ESKFSNATKTALGDP 189
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 452 (164.2 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 106/290 (36%), Positives = 162/290 (55%)
Query: 1434 DDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVA----SDI 1489
+ +K+ L L +YQQ G+ WL L + GIL D+MGLGKT+Q A +A S I
Sbjct: 484 EGFKMPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKI 543
Query: 1490 AERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGS---AQDRIALRE 1546
R ++ E + P++I+CP+T++ W E + ++ L GS ++++ +R+
Sbjct: 544 RTRGSNYRFEGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSFTHKKEKL-VRD 602
Query: 1547 QFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLIL 1606
H ++ITSY +R D + + W+Y ILDEGH I+N + IT+A KQ + HR+IL
Sbjct: 603 IAHCHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIIL 662
Query: 1607 SGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEA 1666
SG+P+QNN+ +LWSLFDF+ PG LGT F + P+ S S +
Sbjct: 663 SGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACV 722
Query: 1667 LHKQVMPFLLRRTKDEV-LS-DLPEKIIQDRYCDLSAVQLKLYEKFSGSQ 1714
L + P+LLRR K +V +S LP+K Q +C L+ Q K+Y+ F S+
Sbjct: 723 LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSK 772
Score = 49 (22.3 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 205 SASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSK 248
+ S I +++ + P + R R+L+ +KR+ K + + Q K
Sbjct: 143 TTSLRQIDKIIEQLSPQAATNRDINRKLDSVKRQ-KYNKEQQLK 185
Score = 46 (21.3 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 1745 VFQALQYLLKLCSHPLLVLG 1764
+F L L K+C+HP L G
Sbjct: 784 IFSGLVALRKICNHPDLFSG 803
Score = 39 (18.8 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 819 DATKMFWPVALPRKSHFKAAAKMRAVKLENDSSGS 853
D + ++ L R + + K + +KLE+DS S
Sbjct: 444 DGDEDYYKQRLRRWNKLRLQDKEKCLKLEDDSEES 478
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 438 (159.2 bits), Expect = 3.6e-35, Sum P(2) = 3.6e-35
Identities = 103/316 (32%), Positives = 177/316 (56%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L+ YQ +G+ W+ L L+GIL D+MGLGKT+Q+ ++V + E++ N L
Sbjct: 501 LKEYQMKGLEWMVSLYNNHLNGILADEMGLGKTIQSISLVTY-LIEKKHENKF------L 553
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE--QFDKHNVIITSYDVVRK 1563
II P + + +W E EK+ + + Y GS Q R +L+ ++ V++T+Y+ V +
Sbjct: 554 IIVPLSTITNWTLEFEKW--APSIKVIVYKGSQQQRRSLQPDIRYGNFQVLLTTYEYVIR 611
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-KAAHRLILSGTPIQNNITDLWSLF 1622
+ L + +++ I+DEGH +KN++SK++ ++ K +RLIL+GTP+QNN+ +LW+L
Sbjct: 612 ERPMLAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWALL 671
Query: 1623 DFLMPGFLGTERQFQATYGKPLV-AARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+F++PG + + F + P K + E+ +L + LHK + PFLLRR K
Sbjct: 672 NFVLPGIFNSVKSFDDWFNTPFANTGAQEKIELTEEES-LLVIRRLHKVLRPFLLRRLKK 730
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSA-- 1739
+V DLP+K+ + C+LS +Q LY++ A + + V +S KG N +
Sbjct: 731 DVEKDLPDKVEKVLKCNLSGLQYVLYQQMLKHNALF-VGADVGGAKSGIKGLNNKIMQLR 789
Query: 1740 KASTH--VFQALQYLL 1753
K H VF+ ++ +L
Sbjct: 790 KICNHPFVFEEVESVL 805
Score = 351 (128.6 bits), Expect = 7.7e-26, Sum P(2) = 7.7e-26
Identities = 86/270 (31%), Positives = 149/270 (55%)
Query: 1498 IEEIHPS--LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE--QFDKHNV 1553
IE+ H + LII P + + +W E EK+ + + Y GS Q R +L+ ++ V
Sbjct: 544 IEKKHENKFLIIVPLSTITNWTLEFEKW--APSIKVIVYKGSQQQRRSLQPDIRYGNFQV 601
Query: 1554 IITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-KAAHRLILSGTPIQ 1612
++T+Y+ V ++ L + +++ I+DEGH +KN++SK++ ++ K +RLIL+GTP+Q
Sbjct: 602 LLTTYEYVIRERPMLAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQ 661
Query: 1613 NNITDLWSLFDFLMPGFLGTERQFQATYGKPLV-AARDSKCSAKDAEAGVLAMEALHKQV 1671
NN+ +LW+L +F++PG + + F + P K + E+ +L + LHK +
Sbjct: 662 NNLPELWALLNFVLPGIFNSVKSFDDWFNTPFANTGAQEKIELTEEES-LLVIRRLHKVL 720
Query: 1672 MPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADK 1731
PFLLRR K +V DLP+K+ + C+LS +Q LY++ A + + V +S K
Sbjct: 721 RPFLLRRLKKDVEKDLPDKVEKVLKCNLSGLQYVLYQQMLKHNALF-VGADVGGAKSGIK 779
Query: 1732 GEGNNVSAKASTHVFQALQYLLKLCSHPLL 1761
G N + +Q L K+C+HP +
Sbjct: 780 GLNNKI-----------MQ-LRKICNHPFV 797
Score = 41 (19.5 bits), Expect = 3.6e-35, Sum P(2) = 3.6e-35
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 333 GASAGVFMPELGPDGALNVEFKDKDSITMKREREID 368
G + + +L P G+ N+ + DS+ K + E++
Sbjct: 14 GVTPALSQVQLQP-GSANLTTQSNDSVVPKNKEELN 48
Score = 39 (18.8 bits), Expect = 5.8e-35, Sum P(2) = 5.8e-35
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 172 EQFVDLNDMIKDEDL---IVHKLNSHGNGFDRR 201
++F ++D K +DL I+ KL F+ R
Sbjct: 156 KEFTTISDQTKKDDLVNEILEKLTELETDFETR 188
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 450 (163.5 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
Identities = 111/328 (33%), Positives = 182/328 (55%)
Query: 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
LK TL+ YQ +G+NWLA L ++GIL D+MGLGKT+Q+ +++A +AE +
Sbjct: 668 LKCTLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAY-LAE-----TYNMW 721
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE-------QFDKHN-- 1552
P L++ P++ + +W EI KF+ L Y G+A+DR LR+ ++DK +
Sbjct: 722 GPFLVVTPASTLHNWQQEITKFVPE--FKVLPYWGNAKDRKILRKFWDRKSLRYDKDSPF 779
Query: 1553 -VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPI 1611
V++TSY ++ D Y ++ W Y ILDE IK+S S ++ L +RL+L+GTPI
Sbjct: 780 HVLVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPI 839
Query: 1612 QNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQV 1671
QN++ +LW+L F+MP + +F + K + + S S + + + LH +
Sbjct: 840 QNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIESHAQSNTSLDEQQ-----LRRLHMIL 894
Query: 1672 MPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADK 1731
PF+LRR K V S+L +K+ D YCDL+ Q KLY++ SQ + ++++
Sbjct: 895 KPFMLRRIKKNVQSELGDKVEIDVYCDLTTRQKKLYQQLR-SQISMSDTDLLEL------ 947
Query: 1732 GEGNNVSAKASTHVFQALQYLLKLCSHP 1759
E N+ S+ +S + + K+C+HP
Sbjct: 948 -ESNSTSSDSS--LANLVMQFRKVCNHP 972
Score = 40 (19.1 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 935 KEIKSEELPGSAAVLPNLPGHLKQWL 960
K+IK++EL G+ A NL + K+ L
Sbjct: 559 KKIKTDELEGTNAD-DNLKSNTKEHL 583
Score = 40 (19.1 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
Identities = 22/96 (22%), Positives = 38/96 (39%)
Query: 204 TSASAHN-IQRLVSSMVPS---VISKRPSARELNMLKRKAKI---SSKDQSKSWSEDGDM 256
T A N I R+V+ + S IS+ +EL + + S++ + W +
Sbjct: 186 TGQFASNYIDRVVAEDISSRNNKISETNKNKELIAIDYSKPLHHNSTRGKEFKWGSTRKI 245
Query: 257 -EVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEH 291
+V H P + +SNKA A + +H
Sbjct: 246 HKVEHKSRRRKPAATTSTTDDSNKAVAAAANGTKDH 281
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 458 (166.3 bits), Expect = 5.0e-35, Sum P(3) = 5.0e-35
Identities = 121/351 (34%), Positives = 184/351 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L++YQ +G+ WL L L+GIL D+MGLGKT+Q A++ + E + N P L
Sbjct: 766 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITY-LMEFKRLNG-----PFL 819
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE--QFDKHNVIITSYDVVRK 1563
II P + + +W +E +K+ S++ + Y GS R A + K NV++T+Y+ + K
Sbjct: 820 IIVPLSTLSNWVYEFDKWAP-SVVK-VSYKGSPAARRAFLPILRSGKFNVLVTTYEYIIK 877
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNITDLWSLF 1622
D L +L W Y I+DEGH +KN K+T + A R++L+GTP+QN + +LW+L
Sbjct: 878 DKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALL 937
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F+ + P A K + E +L + LHK + PFLLRR K E
Sbjct: 938 NFLLPTIFKSCSTFEQWFNAPF-AMTGEKVDLNEEET-ILIIRRLHKVLRPFLLRRLKKE 995
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
V + LPEK+ CD+SA+Q LY QAK + + E KG+G +
Sbjct: 996 VEAQLPEKVEYVIKCDMSALQRVLYRHM---QAKGVL--LTDGSEKDKKGKGGTKT---- 1046
Query: 1743 THVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKAS 1793
+ + L K+C+HP + ES HL F G S+L++AS
Sbjct: 1047 --LMNTIMQLRKICNHPYMF--QHIEESFSEHLG--FTGGIVQGSDLYRAS 1091
Score = 38 (18.4 bits), Expect = 5.0e-35, Sum P(3) = 5.0e-35
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 231 ELNMLKRKAKISSKDQSKSWSEDGDMEVPH-AQNVTTPKGSCGDP 274
E+N A S + S S E+ D E P +Q T K DP
Sbjct: 662 EMNPGYEVAPRSDSEDSGSDEEEDDEEEPQPSQAPTEEKKVIPDP 706
Score = 37 (18.1 bits), Expect = 5.0e-35, Sum P(3) = 5.0e-35
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
+++ + G+++LV++ L+G+L
Sbjct: 765 QLKQYQIKGLEWLVSLYNNNLNGIL 789
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 438 (159.2 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 124/367 (33%), Positives = 197/367 (53%)
Query: 1417 NAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLG 1476
N + F L N+ + K L L+ YQ +G+NWLA L ++GIL D+MGLG
Sbjct: 815 NEGEMNFQNPTLVNAF--EVKQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEMGLG 872
Query: 1477 KTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVG 1536
KT+Q+ +++A +AE +++I P L+I P++ + +W EI +F V + + Y G
Sbjct: 873 KTVQSISVMAY-LAE---THNIWG--PFLVIAPASTLHNWQQEITRF--VPKLKCIPYWG 924
Query: 1537 SAQDRIALRE-------QFDKHN---VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKN 1586
S +DR LR+ +D+++ V++TSY +V DA Y + W Y ILDE IK+
Sbjct: 925 STKDRKILRKFWCRKNMTYDENSPFHVVVTSYQLVVLDAQYFQSVKWQYMILDEAQAIKS 984
Query: 1587 SKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVA 1646
S S ++ K +RL+L+GTPIQN + +LW+L F+MP + +F + K + +
Sbjct: 985 SSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDIES 1044
Query: 1647 ARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKL 1706
S + + ++ LH + PF+LRR K V S+L EKI ++ YCDL+ Q L
Sbjct: 1045 HAQSNTQLNEQQ-----LKRLHMILKPFMLRRVKKNVQSELGEKIEKEVYCDLTQRQKIL 1099
Query: 1707 YEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHP-LLVLGD 1765
Y+ +++IS + ++ E A G G++ A V Q K+C+HP L D
Sbjct: 1100 YQAL-----RRQIS-IAELLEKAILG-GDDTVASIMNLVMQ----FRKVCNHPDLFERED 1148
Query: 1766 -KSPESL 1771
+SP SL
Sbjct: 1149 VRSPLSL 1155
Score = 47 (21.6 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 830 PRKSHFKAAAKMRAVKLENDSS-----GSVDLPQERNGDTSTNSVKITVGSDLEMSVTNT 884
P K+ KA +K+R+ K ++D S + E+N + + V SD E S
Sbjct: 469 PSKAKVKAESKVRS-KAKSDKSRAKLSSDTNKDSEKNDNNDASLQSAGVASDGESSPETP 527
Query: 885 RVVTASALGIFASKL 899
+ + ASKL
Sbjct: 528 LTKASKSKKAKASKL 542
Score = 44 (20.5 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 250 WSEDGD---MEVPHAQNVTTPK-GSCGDPFNSNKADAV 283
W + G+ P TP+ G+ G P N+N A V
Sbjct: 53 WQQRGNEFQASPPPPLGYVTPEYGATGTPVNANNASRV 90
Score = 37 (18.1 bits), Expect = 1.5e-33, Sum P(3) = 1.5e-33
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 989 KMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSES 1045
K R E +LL+ E++ EM A+ E+ + +S A +NS +E+
Sbjct: 411 KEREEQVRLLQ--ESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATEN 465
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 423 (154.0 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 99/296 (33%), Positives = 163/296 (55%)
Query: 1414 LSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDM 1473
L+ ED L+ + K + T++ YQ EG+NWL L RFK++GIL D+M
Sbjct: 290 LTEKEEDFMLLKDANEEDEAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEM 349
Query: 1474 GLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQ 1533
GLGKTLQ ++ + R + +I++ S+IICP + + +W EI+K+ + M +
Sbjct: 350 GLGKTLQTISL----LCYLRFNKNIKK--KSIIICPRSTLDNWYEEIKKWC--TPMKAFK 401
Query: 1534 YVGSAQDRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKI 1591
Y G+ R L +V++T+Y++V KD L + W + ++DE H IKN KS +
Sbjct: 402 YYGNKDQRKELNRNLLHSDFDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVL 461
Query: 1592 TVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSK 1651
+ +V+ L++ +RL+++GTP+ NN+ +LWSL +FLMP +F + ++ D+K
Sbjct: 462 SSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNK 521
Query: 1652 CSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLY 1707
++ ++ LH + PF+LRR K EV LP K + +S +Q KLY
Sbjct: 522 ------QSEIITQ--LHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLY 569
Score = 53 (23.7 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 31/144 (21%), Positives = 61/144 (42%)
Query: 168 LDVCEQFVDLNDMIKD-----EDLIVHKLNS-----HGNGFDRRFYTSASAHNIQRLVSS 217
LD+ + V ND+ K+ E+++ KLNS + N D+ + +
Sbjct: 61 LDLKKLNVSSNDITKEGNNMNENMMNRKLNSSVEDGNDNNHDKNVHRNIGNDTHVSYDDK 120
Query: 218 MVPSVISKRPSARELN--MLKRKAKISSKDQSKSWS----EDGDMEVPHAQNVTTPKGSC 271
+ + ++ ++N M KRK S D ++ +D ME+ + +T +
Sbjct: 121 RKSYLDNNEENSEQMNDNMKKRKLNEISYDNNEEDEFRNKKDDSMEMNDKEKGSTNMSTI 180
Query: 272 GDPFNSNKADAVL-DEDSSEHEGD 294
D N++ D+ ++DS+ H D
Sbjct: 181 NDNNNNHNDDSNNHNDDSNNHNDD 204
Score = 49 (22.3 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 1736 NVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLC-HLSELFPGSSDIISEL 1789
N + + L L K C+HP L G + P + HL E G ++ +L
Sbjct: 581 NAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIET-SGKMSLLDKL 634
Score = 37 (18.1 bits), Expect = 4.1e-33, Sum P(3) = 4.1e-33
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 1708 EKFSGSQAKQEISSMVKVDESADKGEGNN 1736
EK + ++ E S +E+ +G GNN
Sbjct: 861 EKEASEESTDEEDSSGSGEETILEGSGNN 889
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 423 (154.0 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 99/296 (33%), Positives = 163/296 (55%)
Query: 1414 LSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDM 1473
L+ ED L+ + K + T++ YQ EG+NWL L RFK++GIL D+M
Sbjct: 290 LTEKEEDFMLLKDANEEDEAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEM 349
Query: 1474 GLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQ 1533
GLGKTLQ ++ + R + +I++ S+IICP + + +W EI+K+ + M +
Sbjct: 350 GLGKTLQTISL----LCYLRFNKNIKK--KSIIICPRSTLDNWYEEIKKWC--TPMKAFK 401
Query: 1534 YVGSAQDRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKI 1591
Y G+ R L +V++T+Y++V KD L + W + ++DE H IKN KS +
Sbjct: 402 YYGNKDQRKELNRNLLHSDFDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVL 461
Query: 1592 TVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSK 1651
+ +V+ L++ +RL+++GTP+ NN+ +LWSL +FLMP +F + ++ D+K
Sbjct: 462 SSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNK 521
Query: 1652 CSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLY 1707
++ ++ LH + PF+LRR K EV LP K + +S +Q KLY
Sbjct: 522 ------QSEIITQ--LHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLY 569
Score = 53 (23.7 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 31/144 (21%), Positives = 61/144 (42%)
Query: 168 LDVCEQFVDLNDMIKD-----EDLIVHKLNS-----HGNGFDRRFYTSASAHNIQRLVSS 217
LD+ + V ND+ K+ E+++ KLNS + N D+ + +
Sbjct: 61 LDLKKLNVSSNDITKEGNNMNENMMNRKLNSSVEDGNDNNHDKNVHRNIGNDTHVSYDDK 120
Query: 218 MVPSVISKRPSARELN--MLKRKAKISSKDQSKSWS----EDGDMEVPHAQNVTTPKGSC 271
+ + ++ ++N M KRK S D ++ +D ME+ + +T +
Sbjct: 121 RKSYLDNNEENSEQMNDNMKKRKLNEISYDNNEEDEFRNKKDDSMEMNDKEKGSTNMSTI 180
Query: 272 GDPFNSNKADAVL-DEDSSEHEGD 294
D N++ D+ ++DS+ H D
Sbjct: 181 NDNNNNHNDDSNNHNDDSNNHNDD 204
Score = 49 (22.3 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 1736 NVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLC-HLSELFPGSSDIISEL 1789
N + + L L K C+HP L G + P + HL E G ++ +L
Sbjct: 581 NAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIET-SGKMSLLDKL 634
Score = 37 (18.1 bits), Expect = 4.1e-33, Sum P(3) = 4.1e-33
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 1708 EKFSGSQAKQEISSMVKVDESADKGEGNN 1736
EK + ++ E S +E+ +G GNN
Sbjct: 861 EKEASEESTDEEDSSGSGEETILEGSGNN 889
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 446 (162.1 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
Identities = 108/311 (34%), Positives = 171/311 (54%)
Query: 1412 EGLSRNAEDAQFLEQLL-DNSHIDD-YKLGTELKVTLRRYQQEGINWLAFLKRFKLHGIL 1469
E + E+ + E+++ D+ ID+ +K+ ++ L YQ + WL L + GI+
Sbjct: 759 EKIFEEEEEKEAEEEIIGDDYEIDENFKIPFDIYKNLFEYQVTCVRWLYELHCQETGGIV 818
Query: 1470 CDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKF---IDV 1526
D+MGLGKT+Q + +AS RR P+LI+ P+TL+ +W E K+ V
Sbjct: 819 GDEMGLGKTVQIVSFLASLHYSRRLGG------PALIVAPATLLSNWIKEFHKWWPPFRV 872
Query: 1527 SLMSTLQYVGSAQD----RIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGH 1582
L + G D +++ +K ++++T++D +R + + L + W Y ILDEGH
Sbjct: 873 GLFHSSGSGGGGNDGSDKEDIVKKIAEKGHILLTTFDSIRINQEILLKYHWEYVILDEGH 932
Query: 1583 IIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGK 1642
I+N ++IT++ KQL+ HR+ILSG+PIQN +T+LWSLFDF+ PG LGT F++ +
Sbjct: 933 KIRNPDAEITLSCKQLQTPHRVILSGSPIQNKLTELWSLFDFVFPGRLGTLPIFKSQFSL 992
Query: 1643 PLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAV 1702
P+ + S +A AL + P++LRR K +VL LP K Q C L+
Sbjct: 993 PISVGGFANASPIQVQAAYKCAVALRDLISPYMLRRVKSDVLKSLPSKNEQVLMCPLTPF 1052
Query: 1703 QLKLYEKFSGS 1713
Q KLY +F S
Sbjct: 1053 QEKLYLEFLDS 1063
Score = 41 (19.5 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 1749 LQYLLKLCSHPLLVLGDKSPE 1769
+ L K+C+HP ++ D S E
Sbjct: 1080 IDILKKICNHPDILHMDASDE 1100
Score = 39 (18.8 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
Identities = 24/137 (17%), Positives = 51/137 (37%)
Query: 350 NVEFKDKDSITMKREREIDLNVQVPADEPEPLLKKM---KFEDAPPPLMDTMVSPVNCDG 406
N ++ + ++ E EID+ + + P P K K + P + N D
Sbjct: 463 NDDYNNNNNEEENEEDEIDIEKEENDESPPPKSSKKSNSKLKKISTPKSKSKPKNNNDDD 522
Query: 407 CNISIKVDDSG-CNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGEK 465
+++ + SG P +N D + K + + + ++E D + ++
Sbjct: 523 L-LNLDISLSGRIRTPTNRLNLTTDTNKEKDDDNEKEENDENENEENDDD-DDEDDDDDQ 580
Query: 466 GDFLNSETLKNLPENSE 482
D+ E N E+ +
Sbjct: 581 EDYKEIEIEDNEDEDED 597
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 414 (150.8 bits), Expect = 3.5e-34, P = 3.5e-34
Identities = 107/327 (32%), Positives = 174/327 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH-PS 1504
L+ YQ +G+NWLA L ++GIL D+MGLGKT+Q+ A++A +AER E I P
Sbjct: 527 LKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAH-LAER------ENIWGPF 579
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH---------NVII 1555
LII P++ + +W E +F V L Y G+ DR +R + + +V+I
Sbjct: 580 LIISPASTLNNWHQEFTRF--VPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVI 637
Query: 1556 TSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNI 1615
TSY +V +D Y ++ W Y +LDE +K+S S + Q + +RL+L+GTPIQN +
Sbjct: 638 TSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTM 697
Query: 1616 TDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675
+LW+L F+MP + +F + K + + ++K SA D + LH + PF+
Sbjct: 698 AELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENK-SAIDENQ----LSRLHMILKPFM 752
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGN 1735
LRR K +V ++L +KI YC L++ Q LY Q + + + +++ G+
Sbjct: 753 LRRIKKDVENELSDKIEILMYCQLTSRQKLLY---------QALKNKISIEDLLQSSMGS 803
Query: 1736 NVSAKASTH-VFQALQYLLKLCSHPLL 1761
A+ +T + + K+C+HP L
Sbjct: 804 TQQAQTTTSSLMNLVMQFRKVCNHPEL 830
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 417 (151.9 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 115/327 (35%), Positives = 162/327 (49%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TLR YQQ G+ WL L +GIL D+MGLGKT+Q A++A E+ E P
Sbjct: 446 TLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAHLACEK------ENWGPH 499
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF---DKHNVIITSYDVV 1561
LII P++++ +W E +KF+ L Y G+ Q+R R + D +V ITSY +V
Sbjct: 500 LIIVPTSVMLNWEMEFKKFLPG--FKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQLV 557
Query: 1562 RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSL 1621
+D + W Y ILDE H IKN +S+ ++ A HRL+L+GTP+QNN+ +LWSL
Sbjct: 558 LQDHQPFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSL 617
Query: 1622 FDFLMPGFLGTE-------RQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPF 1674
FLMP + + FQ + KP+ + +A LH+ + P+
Sbjct: 618 LYFLMPAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDMNPEAMNTVAK--LHRVLRPY 675
Query: 1675 LLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEG 1734
LLRR K EV +P K YC LS Q LY+ F +EI + G
Sbjct: 676 LLRRLKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDFINRARTREILA-----------SG 724
Query: 1735 NNVSAKASTHVFQALQYLLKLCSHPLL 1761
N +S + L L K+C+HP L
Sbjct: 725 NFMS------IINCLMQLRKVCNHPNL 745
Score = 44 (20.5 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 222 VISKRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTP 267
V SK+ + L RK I+ + + + E V HA + P
Sbjct: 395 VASKKKRRVNDDGLARKKSIAGISEQRKFDEPNGSPVLHANKIQVP 440
Score = 41 (19.5 bits), Expect = 1.9e-31, Sum P(3) = 1.9e-31
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 354 KDKDSIT--MKREREIDLNVQVPADEPEPLL 382
K+K+ ++ +K+E DL V+V EP+ L+
Sbjct: 8 KNKNGLSSYIKKEGSSDLKVRVRFREPKLLV 38
Score = 37 (18.1 bits), Expect = 1.9e-31, Sum P(3) = 1.9e-31
Identities = 13/64 (20%), Positives = 31/64 (48%)
Query: 1004 SSMFTEMLSANEIDV-ESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRML 1062
S + E++ + D+ + +S ++ + ++ ++ S SLS +D+ S K+R +
Sbjct: 344 SDLDGEVIVMKKEDITDGVSTKKDLNDGDQNEVPLHDTGSSSSLSLLYNEDVASKKKRRV 403
Query: 1063 TTSG 1066
G
Sbjct: 404 NDDG 407
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 428 (155.7 bits), Expect = 4.5e-33, Sum P(3) = 4.5e-33
Identities = 101/273 (36%), Positives = 159/273 (58%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+ WL L L+GIL D+MGLGKT+Q +++ + E + P L
Sbjct: 754 LREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICY-LMETKNDRG-----PFL 807
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIAL-REQF--DKHNVIITSYDVV- 1561
++ PS+++ W EI F S+ + Y G+ +R L +EQ K NV++T+Y+ +
Sbjct: 808 VVVPSSVLPGWQSEIN-FWAPSIHKIV-YCGTPDERRKLFKEQIVHQKFNVLLTTYEYLM 865
Query: 1562 -RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWS 1620
+ D L ++ W+Y I+DEGH IKN+ K+ +K ++HRL+L+GTP+QNN+ +LW+
Sbjct: 866 NKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWA 925
Query: 1621 LFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDA----EAGVLAMEALHKQVMPFLL 1676
L +FL+P + F + KP + +S SA++A E +L + LH+ + PF+L
Sbjct: 926 LLNFLLPNIFNSSEDFSQWFNKPFQSNGES--SAEEALLSEEENLLIINRLHQVLRPFVL 983
Query: 1677 RRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
RR K +V ++LPEKI + C+ SA Q KL K
Sbjct: 984 RRLKHKVENELPEKIERLIRCEASAYQ-KLLMK 1015
Score = 55 (24.4 bits), Expect = 4.5e-33, Sum P(3) = 4.5e-33
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 1419 EDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEG 1453
E A+FL +L+ +S + KL T+L V L+ + G
Sbjct: 11 EAAKFLHKLIQDSKDEPAKLATKLYVILQHMKTSG 45
Score = 45 (20.9 bits), Expect = 4.5e-33, Sum P(3) = 4.5e-33
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 1728 SADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPE 1769
S + GN +S+ A+ F + L+ SHP L SP+
Sbjct: 1470 SRTQATGNAISSAATGLDFVSSDKRLEAASHPTSSLALTSPD 1511
Score = 41 (19.5 bits), Expect = 3.6e-30, Sum P(4) = 3.6e-30
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 13 TLLDTGSTQATRFTAARQIG 32
TL++ T+ FT+ RQ+G
Sbjct: 110 TLVENEMTKYDAFTSGRQLG 129
Score = 41 (19.5 bits), Expect = 4.6e-30, Sum P(4) = 4.6e-30
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 974 KDSLLPYAELSRTYGKMRNEASQLLRAMETSSM 1006
K++ +PY +SR + N+ + A+++S +
Sbjct: 46 KENTMPYQVISRAMDTVVNQHGLDIEALKSSCL 78
Score = 39 (18.8 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 1722 MVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLL 1761
M +V+++ G N ++A V ++ L +C+HP L
Sbjct: 1014 MKRVEDNL--GSIGNAKSRA---VHNSVMELRNICNHPYL 1048
Score = 39 (18.8 bits), Expect = 3.6e-30, Sum P(4) = 3.6e-30
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
++R + G+++LV++ L+G+L
Sbjct: 753 KLREYQMNGLRWLVSLYNNHLNGIL 777
Score = 38 (18.4 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 18/99 (18%), Positives = 45/99 (45%)
Query: 1699 LSAVQLKLYEKFSGSQAK-QEISSMVKVDESADKG-EGNNVSAKASTHVFQALQYLL-KL 1755
+ + + L++ + QA+ + + ++ES + G E +VS + L+ ++
Sbjct: 2806 IESADVSLHQ-LADIQAEPSNLVDQMDIEESKEPGTESADVSLHQLADIQPGPSILVDQM 2864
Query: 1756 CSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKASS 1794
+ G +S + L L+++ PG S ++ ++ S
Sbjct: 2865 DTEKSKEPGTESADVSLHQLADIQPGPSILVDQMDTEKS 2903
Score = 38 (18.4 bits), Expect = 4.6e-30, Sum P(4) = 4.6e-30
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 1411 TEGLSRNAEDAQFLEQLLDNSHI-DDYKL 1438
+ G + E + +Q +DNS I D +K+
Sbjct: 181 SSGKRKRGESSLSWDQNMDNSQIFDSHKI 209
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 426 (155.0 bits), Expect = 8.9e-33, Sum P(3) = 8.9e-33
Identities = 96/274 (35%), Positives = 163/274 (59%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L +YQ EG+ WL L LHGIL D+MGLGKT+Q ++ A + E + + +++ +L
Sbjct: 884 LMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTISLFAY-LKEFKNNINVK----NL 938
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDR--IALREQFDKHNVIITSYDVVRK 1563
II P + + +W E ++ SL + + Y G+ +R IA + ++ IT++D+V K
Sbjct: 939 IIVPLSTLPNWISEFNRWCP-SL-NVITYRGNKLERKHIAKKLLEQTFDICITTFDLVIK 996
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFD 1623
+ +L ++ WNY ++DEGH +KN+KS+ V + + K+ +R++L+GTP+QNN+++LWSL +
Sbjct: 997 EKSFLMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILLTGTPLQNNLSELWSLLN 1056
Query: 1624 FLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEV 1683
FL+P + F+ + K L +D + E +L + LH ++PF+LRR K +V
Sbjct: 1057 FLLPKIFSSCVDFEKWFVKSLHNEKDVYEHITEEEQ-LLIINRLHSVLLPFMLRRVKKDV 1115
Query: 1684 LSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQ 1717
L LP+K + + +LS Q LY++ KQ
Sbjct: 1116 LKSLPKKYEYNIHIELSLYQKILYKQIQTKGFKQ 1149
Score = 46 (21.3 bits), Expect = 8.9e-33, Sum P(3) = 8.9e-33
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 146 DNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFY 203
DN +L + +N + + LDV EQF LN+M K ++ K ++ ++ F+
Sbjct: 739 DNDIEAYMKLIKTAKNKRLQELLDVTEQF--LNNMSKC--VLYQKKEAYQESSEQNFH 792
Score = 46 (21.3 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 230 RELNMLKRKAKISSKDQSKSWSE 252
R L LKRK K +++SKS E
Sbjct: 111 RHLEYLKRKKKKDKENKSKSKKE 133
Score = 44 (20.5 bits), Expect = 8.9e-33, Sum P(3) = 8.9e-33
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
E+ L G+++LV++ LHG+L
Sbjct: 883 ELMKYQLEGLEWLVSLYNNNLHGIL 907
Score = 41 (19.5 bits), Expect = 4.2e-31, Sum P(4) = 4.2e-31
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 152 RERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNI 211
++R+ + + NLK DV + + L+D ++D++ KL +G+ + S ++I
Sbjct: 261 KDRIRKNRNNLKDEK--DVSNKNI-LDD---NKDIVEFKLQDISSGYSET--SCKSTNSI 312
Query: 212 QRLVSSMVPS 221
+ SS S
Sbjct: 313 ENGNSSSTSS 322
Score = 39 (18.8 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 12/62 (19%), Positives = 29/62 (46%)
Query: 432 SSVKVEPESNLDGLSHPSKEAIDILEPRGQSGEKGDFLNSETLKNLPENSELMNWLKLAR 491
+ V + ++ + H +K+ ++ E Q K N+ + +L + + NW +L +
Sbjct: 633 NEVSIHFNDDIKKIEHVAKK--ELQEYIKQIHNKSKIHNN--ISSLKQYMLISNWKELTK 688
Query: 492 HS 493
H+
Sbjct: 689 HN 690
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 426 (155.0 bits), Expect = 8.9e-33, Sum P(3) = 8.9e-33
Identities = 96/274 (35%), Positives = 163/274 (59%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L +YQ EG+ WL L LHGIL D+MGLGKT+Q ++ A + E + + +++ +L
Sbjct: 884 LMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTISLFAY-LKEFKNNINVK----NL 938
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDR--IALREQFDKHNVIITSYDVVRK 1563
II P + + +W E ++ SL + + Y G+ +R IA + ++ IT++D+V K
Sbjct: 939 IIVPLSTLPNWISEFNRWCP-SL-NVITYRGNKLERKHIAKKLLEQTFDICITTFDLVIK 996
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFD 1623
+ +L ++ WNY ++DEGH +KN+KS+ V + + K+ +R++L+GTP+QNN+++LWSL +
Sbjct: 997 EKSFLMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILLTGTPLQNNLSELWSLLN 1056
Query: 1624 FLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEV 1683
FL+P + F+ + K L +D + E +L + LH ++PF+LRR K +V
Sbjct: 1057 FLLPKIFSSCVDFEKWFVKSLHNEKDVYEHITEEEQ-LLIINRLHSVLLPFMLRRVKKDV 1115
Query: 1684 LSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQ 1717
L LP+K + + +LS Q LY++ KQ
Sbjct: 1116 LKSLPKKYEYNIHIELSLYQKILYKQIQTKGFKQ 1149
Score = 46 (21.3 bits), Expect = 8.9e-33, Sum P(3) = 8.9e-33
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 146 DNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFY 203
DN +L + +N + + LDV EQF LN+M K ++ K ++ ++ F+
Sbjct: 739 DNDIEAYMKLIKTAKNKRLQELLDVTEQF--LNNMSKC--VLYQKKEAYQESSEQNFH 792
Score = 46 (21.3 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 230 RELNMLKRKAKISSKDQSKSWSE 252
R L LKRK K +++SKS E
Sbjct: 111 RHLEYLKRKKKKDKENKSKSKKE 133
Score = 44 (20.5 bits), Expect = 8.9e-33, Sum P(3) = 8.9e-33
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
E+ L G+++LV++ LHG+L
Sbjct: 883 ELMKYQLEGLEWLVSLYNNNLHGIL 907
Score = 41 (19.5 bits), Expect = 4.2e-31, Sum P(4) = 4.2e-31
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 152 RERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNI 211
++R+ + + NLK DV + + L+D ++D++ KL +G+ + S ++I
Sbjct: 261 KDRIRKNRNNLKDEK--DVSNKNI-LDD---NKDIVEFKLQDISSGYSET--SCKSTNSI 312
Query: 212 QRLVSSMVPS 221
+ SS S
Sbjct: 313 ENGNSSSTSS 322
Score = 39 (18.8 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 12/62 (19%), Positives = 29/62 (46%)
Query: 432 SSVKVEPESNLDGLSHPSKEAIDILEPRGQSGEKGDFLNSETLKNLPENSELMNWLKLAR 491
+ V + ++ + H +K+ ++ E Q K N+ + +L + + NW +L +
Sbjct: 633 NEVSIHFNDDIKKIEHVAKK--ELQEYIKQIHNKSKIHNN--ISSLKQYMLISNWKELTK 688
Query: 492 HS 493
H+
Sbjct: 689 HN 690
>UNIPROTKB|H0YMN5 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 PROSITE:PS51413
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC020661 GO:GO:0016817 ChiTaRS:INO80
HGNC:HGNC:26956 EMBL:AC021753 ProteinModelPortal:H0YMN5 SMR:H0YMN5
Ensembl:ENST00000558357 Bgee:H0YMN5 Uniprot:H0YMN5
Length = 1104
Score = 412 (150.1 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 107/327 (32%), Positives = 174/327 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH-PS 1504
L+ YQ +G+NWLA L ++GIL D+MGLGKT+Q+ A++A +AER E I P
Sbjct: 518 LKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAH-LAER------ENIWGPF 570
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH---------NVII 1555
LII P++ + +W E +F V L Y G+ DR +R + + +V+I
Sbjct: 571 LIISPASTLNNWHQEFTRF--VPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVI 628
Query: 1556 TSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNI 1615
TSY +V +D Y ++ W Y +LDE +K+S S + Q + +RL+L+GTPIQN +
Sbjct: 629 TSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTM 688
Query: 1616 TDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675
+LW+L F+MP + +F + K + + ++K SA D + LH + PF+
Sbjct: 689 AELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENK-SAIDENQ----LSRLHMILKPFM 743
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGN 1735
LRR K +V ++L +KI YC L++ Q LY Q + + + +++ G+
Sbjct: 744 LRRIKKDVENELSDKIEILMYCQLTSRQKLLY---------QALKNKISIEDLLQSSMGS 794
Query: 1736 NVSAKASTH-VFQALQYLLKLCSHPLL 1761
A+ +T + + K+C+HP L
Sbjct: 795 TQQAQNTTSSLMNLVMQFRKVCNHPEL 821
Score = 39 (18.8 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 665 QEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSML 708
QEE++ K+ ++++++ D+ V + E D+ +N + L
Sbjct: 411 QEEILRKLEDSSTQRQIDIGGGVVVNITQE--DYDSNHFKAQAL 452
>UNIPROTKB|Q71Z25 [details] [associations]
symbol:LMOf2365_1665 "Helicase, Snf2 family" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50966 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 EMBL:AE017262
GenomeReviews:AE017262_GR eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:YP_014262.1
ProteinModelPortal:Q71Z25 STRING:Q71Z25 GeneID:2798638
KEGG:lmf:LMOf2365_1665 PATRIC:20324567 HOGENOM:HOG000026038
OMA:NTLNAEM ProtClustDB:CLSK629151 InterPro:IPR013663 Pfam:PF08455
Uniprot:Q71Z25
Length = 1072
Score = 362 (132.5 bits), Expect = 2.3e-32, Sum P(3) = 2.3e-32
Identities = 88/244 (36%), Positives = 132/244 (54%)
Query: 1398 LPLARGVSPPTGLTEGLS--RNAEDAQFLEQLLD--NSHIDDYKLGTELKVTLRRYQQEG 1453
+PL RG+ L G + F E L D D + L LK LR YQ G
Sbjct: 564 VPLYRGMQIYDILGAGAQDEHHKFSRSFRELLTDITTQSEDSFALPKGLKAELRDYQLTG 623
Query: 1454 INWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV 1513
W+ L ++ L GIL DDMGLGKT+Q + +AS++ + + P LII P++L+
Sbjct: 624 FEWMKSLAKYNLGGILADDMGLGKTVQTISFLASELEDN------PNLKPVLIITPASLL 677
Query: 1514 GHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLW 1573
+W E+EKF ++ L G+ Q RIA E+ +V + SY +R+D + + +
Sbjct: 678 YNWQSELEKFAPAIPVTVLH--GTKQSRIAEMEEMKHGHVYLISYPSLRQDIVHFADVAF 735
Query: 1574 NYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTE 1633
+ I+DE IKN +K + AV+ LK H LSGTP++N+I +LW++F LMPGF +
Sbjct: 736 SSVIIDESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSL 795
Query: 1634 RQFQ 1637
R+F+
Sbjct: 796 RKFK 799
Score = 93 (37.8 bits), Expect = 2.3e-32, Sum P(3) = 2.3e-32
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 1669 KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES 1728
K + PFLLRR K +V+ +LP+KI + Y +L+ Q +Y ++ + K+
Sbjct: 808 KMIRPFLLRRLKQDVVKELPDKIETNLYSELTDEQKTIY-----------LAYLEKIQAD 856
Query: 1729 ADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPES 1770
+ GN +++ + L L ++C P L + + ES
Sbjct: 857 LEASNGN--ASEERIKLLAGLTRLRQICCDPSLFVENYQGES 896
Score = 47 (21.6 bits), Expect = 2.3e-32, Sum P(3) = 2.3e-32
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 313 PVWEVRHGSVMALREILTHHGASAGVFMPELGPDGALNVEFKDKDSITMKREREIDLNVQ 372
P EV++ + +LRE ++H +G F+ L + +E D + R++++ N+Q
Sbjct: 508 PEEEVQN-VLESLREKRSYHRLKSGRFL-SLESENYKQME--DVLQMLEVRKKDVQANMQ 563
Query: 373 VP 374
VP
Sbjct: 564 VP 565
Score = 43 (20.2 bits), Expect = 5.9e-32, Sum P(3) = 5.9e-32
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 355 DKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNI 409
D DS + + N+ +P LL+ + D +M V + G N+
Sbjct: 214 DTDSFYWSKSYAEEKNLTIPPSMASDLLELLTERDTTCIIMKERVEDIKYRGINV 268
Score = 38 (18.4 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESA 1729
QV + + T +E + DL +K + D +Q E+ G + +EI ++++D
Sbjct: 1015 QVFRMITKGTIEERIFDLQKK--KQALVD-ELIQPG--EQMLGKLSTEEIKQILQLDNGR 1069
Query: 1730 D 1730
D
Sbjct: 1070 D 1070
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 414 (150.8 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 101/268 (37%), Positives = 148/268 (55%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH-PS 1504
LR YQ EG+ W+ L +GIL D+MGLGKT+Q A++A + E + ++H P
Sbjct: 386 LRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAY-LLESK------DLHGPH 438
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVR 1562
LI+ P ++ +W E E + +S Y GS + R +R + K NV+IT YD++
Sbjct: 439 LILAPKAVLPNW--ENEFALWAPSISAFLYDGSKEKRTEIRARIAGGKFNVLITHYDLIM 496
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQ-LKAAHRLILSGTPIQNNITDLWSL 1621
+D +L ++ WNY I+DEGH +KN + + + + RL+L+GTPIQN++ +LWSL
Sbjct: 497 RDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSL 556
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F+ + P A S D E +L + LH + PFLLRR K
Sbjct: 557 LNFLLPHIFNSIHNFEEWFNTPF--AECGSASLTDEEE-LLIINRLHHVIRPFLLRRKKS 613
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
EV LP K CD+SA Q KLY K
Sbjct: 614 EVEKFLPGKTQVILKCDMSAWQ-KLYYK 640
Score = 43 (20.2 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 1198 SRVEGFISRRGSELALRHLCGKFGVSL 1224
S++EG S RG +L + L +G+ L
Sbjct: 108 SQLEGLPSNRGEDLQEKCLLELYGLKL 134
Score = 42 (19.8 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 24/85 (28%), Positives = 36/85 (42%)
Query: 1716 KQEISSMVKV--DESADKGEGNNVSAKASTHVFQAL-QYLLKLCSHPLLVLG-D----KS 1767
K ++S+ K+ + D G S + Q L L K C+HP L +G D K
Sbjct: 628 KCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQNLTMQLRKCCNHPYLFVGADYNMCKK 687
Query: 1768 PESLLCHLSELFPGSSDIISELHKA 1792
PE + S F ++ +L KA
Sbjct: 688 PE--IVRASGKFELLDRLLPKLKKA 710
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 423 (154.0 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 98/272 (36%), Positives = 151/272 (55%)
Query: 1439 GTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSI 1498
G + + L+ YQ +G+ W+ L L+GIL D+MGLGKT+Q ++V + E + +N
Sbjct: 526 GGDPNLLLKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTISLVTY-LMEVKQNNG- 583
Query: 1499 EEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDK--HNVIIT 1556
P L+I P + + +W E K+ ++T+ Y G+ R + Q K NV++T
Sbjct: 584 ----PYLVIVPLSTLSNWQNEFAKW--APSVTTIIYKGTKDARRRVEGQIRKGAFNVLMT 637
Query: 1557 SYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-KAAHRLILSGTPIQNNI 1615
+Y+ V K+ LG++ W Y I+DEGH +KN K+T+ + A HRL+L+GTP+QN +
Sbjct: 638 TYEYVIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKL 697
Query: 1616 TDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675
+LW+L +FL+P + F+ + P A K E +L + LHK + PFL
Sbjct: 698 PELWALLNFLLPSIFSSCGTFEQWFNAPF-ATTGEKVELNQEET-MLIIRRLHKVLRPFL 755
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLY 1707
LRR K EV S LP+K CD SA+Q +Y
Sbjct: 756 LRRLKKEVESQLPDKTEYVIKCDQSALQKVIY 787
Score = 44 (20.5 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 1716 KQEISSMVKVDESADKGEGNNVSAKA 1741
K+E SS VK +E+ E + SA A
Sbjct: 1394 KKETSSSVKTEEAKKDDEPSTSSASA 1419
Score = 39 (18.8 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 826 PVALPRKSHFKAAAKMRAVKLEN 848
P +P KA ++RA++L N
Sbjct: 201 PADIPDHMKLKAEIELRALRLVN 223
Score = 38 (18.4 bits), Expect = 3.3e-32, Sum P(3) = 3.3e-32
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 1281 LKPKLLTLLP 1290
L+PK+ TLLP
Sbjct: 122 LRPKVTTLLP 131
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 414 (150.8 bits), Expect = 4.0e-32, Sum P(2) = 4.0e-32
Identities = 107/327 (32%), Positives = 174/327 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH-PS 1504
L+ YQ +G+NWLA L ++GIL D+MGLGKT+Q+ A++A +AER E I P
Sbjct: 521 LKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAH-LAER------ENIWGPF 573
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH---------NVII 1555
LII P++ + +W E +F V L Y G+ DR +R + + +V+I
Sbjct: 574 LIISPASTLNNWHQEFTRF--VPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVI 631
Query: 1556 TSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNI 1615
TSY +V +D Y ++ W Y +LDE +K+S S + Q + +RL+L+GTPIQN +
Sbjct: 632 TSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTM 691
Query: 1616 TDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675
+LW+L F+MP + +F + K + + ++K SA D + LH + PF+
Sbjct: 692 AELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENK-SAIDENQ----LSRLHMILKPFM 746
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGN 1735
LRR K +V ++L +KI YC L++ Q LY Q + + + +++ G+
Sbjct: 747 LRRIKKDVENELSDKIEILMYCQLTSRQKLLY---------QALKNKISIEDLLQSSMGS 797
Query: 1736 NVSAKASTH-VFQALQYLLKLCSHPLL 1761
A+ +T + + K+C+HP L
Sbjct: 798 TQQAQTTTSSLMNLVMQFRKVCNHPEL 824
Score = 39 (18.8 bits), Expect = 4.0e-32, Sum P(2) = 4.0e-32
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 665 QEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSML 708
QEE++ K+ ++++++ D+ V + E D+ +N + L
Sbjct: 414 QEEILRKLEDSSTQRQIDIGGGVVVNITQE--DYDSNHFKAQAL 455
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 414 (150.8 bits), Expect = 4.0e-32, Sum P(2) = 4.0e-32
Identities = 107/327 (32%), Positives = 174/327 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH-PS 1504
L+ YQ +G+NWLA L ++GIL D+MGLGKT+Q+ A++A +AER E I P
Sbjct: 527 LKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAH-LAER------ENIWGPF 579
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH---------NVII 1555
LII P++ + +W E +F V L Y G+ DR +R + + +V+I
Sbjct: 580 LIISPASTLNNWHQEFTRF--VPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVI 637
Query: 1556 TSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNI 1615
TSY +V +D Y ++ W Y +LDE +K+S S + Q + +RL+L+GTPIQN +
Sbjct: 638 TSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTM 697
Query: 1616 TDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675
+LW+L F+MP + +F + K + + ++K SA D + LH + PF+
Sbjct: 698 AELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENK-SAIDENQ----LSRLHMILKPFM 752
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGN 1735
LRR K +V ++L +KI YC L++ Q LY Q + + + +++ G+
Sbjct: 753 LRRIKKDVENELSDKIEILMYCQLTSRQKLLY---------QALKNKISIEDLLQSSMGS 803
Query: 1736 NVSAKASTH-VFQALQYLLKLCSHPLL 1761
A+ +T + + K+C+HP L
Sbjct: 804 TQQAQTTTSSLMNLVMQFRKVCNHPEL 830
Score = 39 (18.8 bits), Expect = 4.0e-32, Sum P(2) = 4.0e-32
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 665 QEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSML 708
QEE++ K+ ++++++ D+ V + E D+ +N + L
Sbjct: 420 QEEILRKLEDSSAQRQIDIGGGVVVNITQE--DYDSNHFKAQAL 461
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 410 (149.4 bits), Expect = 4.1e-32, Sum P(2) = 4.1e-32
Identities = 115/330 (34%), Positives = 173/330 (52%)
Query: 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
L+ TLR YQ G++WLA L ++GIL D+MGLGKT+Q A++A E
Sbjct: 821 LRGTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHGVWG----- 875
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF-DKH--NVIITSY 1558
P L++ P++++ +W E +K+ + T Y G+ ++R R + D + NV+ITSY
Sbjct: 876 -PHLVVVPTSVILNWEMEFKKWCPGFKIMT--YYGNQEERRQKRRGWMDDNSWNVLITSY 932
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
+V +D L + W+Y ILDE H IKN +S+ A+ + RL+L+GTP+QNN+T+L
Sbjct: 933 QLVLQDQQVLKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTEL 992
Query: 1619 WSLFDFLMP------GFLGTE--RQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQ 1670
WSL FLMP G G R F + +P+ + D EA + + LH
Sbjct: 993 WSLLFFLMPTDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAKQVVTK-LHTV 1051
Query: 1671 VMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKF-SGSQAKQEISSMVKVDESA 1729
+ P++LRR K +V +P K YC LS Q LY+ F S +Q K+ ++S
Sbjct: 1052 LRPYILRRLKADVEKQMPGKYEHVVYCRLSKRQRYLYDGFMSRAQTKETLAS-------- 1103
Query: 1730 DKGEGNNVSAKASTHVFQALQYLLKLCSHP 1759
GN +S + L L K+C+HP
Sbjct: 1104 ----GNYLS------IINCLMQLRKVCNHP 1123
Score = 44 (20.5 bits), Expect = 4.1e-32, Sum P(2) = 4.1e-32
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 1377 SDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGLTEGLSRNAEDAQFLEQLLDNSHIDDY 1436
S D+S S +LVP P + +S P +T S E A + S +
Sbjct: 652 SSFDESEFGSEDPDEVTLVPTGPTNKDLSTPATVTA--SAELEPAAMTPSIDQTSTEEPI 709
Query: 1437 KLGTELKV 1444
+GTE +
Sbjct: 710 AIGTETPI 717
Score = 39 (18.8 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 21/83 (25%), Positives = 31/83 (37%)
Query: 1170 DDQD-----FLSFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCGKFGVSL 1224
DD+D L F S+ S H GE + G R + + +FG
Sbjct: 606 DDEDGGEPGLLGFFSAKDLSLSNLHQTNSGEGDTHQTGADGDRNEDSSFDE--SEFGSED 663
Query: 1225 FDKLPKLWDCLTEVLIPDGPSNK 1247
D++ L+P GP+NK
Sbjct: 664 PDEV---------TLVPTGPTNK 677
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 390 (142.3 bits), Expect = 4.2e-32, P = 4.2e-32
Identities = 96/280 (34%), Positives = 145/280 (51%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
+R+YQ EG+ WL L L GIL D+MGLGKT+QA +++A E S P L
Sbjct: 202 MRKYQLEGLEWLKSLWMNGLCGILADEMGLGKTVQAISLIAF-FKEHNVSG------PFL 254
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF----DKHN----VIITS 1557
I P + V +W E ++ + T+ Y G+ +R LR++F D+ + V+ TS
Sbjct: 255 ISAPLSTVSNWVDEFARWTPG--IKTVLYHGTRDERAQLRKKFMNLRDQKSPDFPVVCTS 312
Query: 1558 YDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITD 1617
Y++ D +L Q W Y I+DEGH +KN ++ + +A+RL+++GTP+QNNIT+
Sbjct: 313 YEICMNDRKFLAQYQWRYIIVDEGHRLKNMNCRLIKELLSYNSANRLLITGTPLQNNITE 372
Query: 1618 LWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLR 1677
LWSL FL+P FQ + V + + + L + +H + PFLLR
Sbjct: 373 LWSLLHFLLPEIFNDLNSFQNWFDFSSVLDNNGQTDMIERRKRTL-VSTMHSILKPFLLR 431
Query: 1678 RTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQ 1717
R K +V S LP+K Y L+ Q LY + +Q
Sbjct: 432 RVKTDVESALPKKREYILYAPLTLEQKDLYREILNGTGRQ 471
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 391 (142.7 bits), Expect = 5.6e-32, P = 5.6e-32
Identities = 105/320 (32%), Positives = 175/320 (54%)
Query: 1438 LGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNS 1497
+ +LK ++ YQ GINWL+ L +L IL DDMGLGKT Q A +A + E+
Sbjct: 558 MAEDLK--MKNYQIVGINWLSLLFENELSCILADDMGLGKTCQVIAFLAH-LYEKGIKG- 613
Query: 1498 IEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF----DKHNV 1553
P L++ PS+ + +W E +KF +S + Y R +REQ D NV
Sbjct: 614 -----PHLVVVPSSTIENWLREFQKFCPT--LSVMPYYADQNVRAQIREQIEGNRDDINV 666
Query: 1554 IITSYDVVRK--DADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPI 1611
+IT+Y + + DA +L + + C+ DEGH++K+S S + + +++A RL+L+GTP+
Sbjct: 667 VITTYTIAKGKVDAHFLRNMDFCACVYDEGHMLKSSTSVLYEKLIRIRARFRLLLTGTPL 726
Query: 1612 QNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK-- 1669
QNN+ +L SL F++P ER+ Y + + +K + ++ + +L+ + + +
Sbjct: 727 QNNLQELASLLGFILPKVF-QERKDDLQY----IFSNKAK-TVDESHSALLSAQRIERAK 780
Query: 1670 -QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES 1728
+ PF+LRR K +V+ DLP KI + YC+++A Q ++YE K E+ +++ D +
Sbjct: 781 SMLKPFVLRRKKHQVI-DLPAKISRVEYCEMNAAQREIYE-----HEKNEVKKLLE-DRA 833
Query: 1729 ADKGEGNNVSAKASTHVFQA 1748
A K GN SA + QA
Sbjct: 834 AGKKTGNK-SANILMKLRQA 852
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 412 (150.1 bits), Expect = 6.5e-32, Sum P(2) = 6.5e-32
Identities = 107/327 (32%), Positives = 174/327 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH-PS 1504
L+ YQ +G+NWLA L ++GIL D+MGLGKT+Q+ A++A +AER E I P
Sbjct: 518 LKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAH-LAER------ENIWGPF 570
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH---------NVII 1555
LII P++ + +W E +F V L Y G+ DR +R + + +V+I
Sbjct: 571 LIISPASTLNNWHQEFTRF--VPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVI 628
Query: 1556 TSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNI 1615
TSY +V +D Y ++ W Y +LDE +K+S S + Q + +RL+L+GTPIQN +
Sbjct: 629 TSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTM 688
Query: 1616 TDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675
+LW+L F+MP + +F + K + + ++K SA D + LH + PF+
Sbjct: 689 AELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENK-SAIDENQ----LSRLHMILKPFM 743
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGN 1735
LRR K +V ++L +KI YC L++ Q LY Q + + + +++ G+
Sbjct: 744 LRRIKKDVENELSDKIEILMYCQLTSRQKLLY---------QALKNKISIEDLLQSSMGS 794
Query: 1736 NVSAKASTH-VFQALQYLLKLCSHPLL 1761
A+ +T + + K+C+HP L
Sbjct: 795 TQQAQNTTSSLMNLVMQFRKVCNHPEL 821
Score = 39 (18.8 bits), Expect = 6.5e-32, Sum P(2) = 6.5e-32
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 665 QEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSML 708
QEE++ K+ ++++++ D+ V + E D+ +N + L
Sbjct: 411 QEEILRKLEDSSTQRQIDIGGGVVVNITQE--DYDSNHFKAQAL 452
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 406 (148.0 bits), Expect = 6.6e-32, Sum P(2) = 6.6e-32
Identities = 95/274 (34%), Positives = 152/274 (55%)
Query: 1439 GTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSI 1498
G + L+ YQ +G+ W+ L L+GIL D+MGLGKT+Q A + + ++ S
Sbjct: 359 GGNPSLKLKPYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFITYLMEIKKTSG-- 416
Query: 1499 EEIHPSLIICPSTLVGHWAFEIEKFI-DVSLMSTLQYVGSAQDRIALRE--QFDKHNVII 1555
P L+I P + V +W E +K+ +V L++ Y G + R + K NV++
Sbjct: 417 ----PFLVIVPLSTVPNWQNEFDKWAANVHLIA---YKGPKETRKVFEPIIKSGKFNVLL 469
Query: 1556 TSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNN 1614
T+++ V ++ LG+L W Y I+DEGH +KN K+T + + + RL+++GTP+QN
Sbjct: 470 TTFEYVIREKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNK 529
Query: 1615 ITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPF 1674
+ +LW+L +FL+P + F+ + P A K E +L + LHK + PF
Sbjct: 530 LPELWALLNFLLPSIFSSCSTFEQWFNAPF-ATTGEKVELTQEET-MLIIRRLHKVLRPF 587
Query: 1675 LLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
LLRR K EV S+LP+K+ CD+SA+Q LY+
Sbjct: 588 LLRRLKKEVESELPDKMEFVVRCDMSALQKVLYK 621
Score = 43 (20.2 bits), Expect = 6.6e-32, Sum P(2) = 6.6e-32
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1705 KLYEKFSGSQAKQEISSMVKVDESADKGEGN-NVSAKAS 1742
KL EK + AK+E + K E ++ G N+SA S
Sbjct: 1299 KLQEKLARKAAKKEQKRLEK--EKSESSTGTVNLSAAGS 1335
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 387 (141.3 bits), Expect = 8.8e-32, P = 8.8e-32
Identities = 94/276 (34%), Positives = 155/276 (56%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L+ YQ +G+ WL L + L+GIL D+MGLGKTLQ + + S + E N I P L
Sbjct: 175 LKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFL-SHLIE----NGING--PFL 227
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDR--IALREQFDKHNVIITSYDVVRK 1563
++ P + + +W EI KF + +Y+G+ Q+R I L +Q + N+I+TSY++ +
Sbjct: 228 VVVPVSTLSNWYNEIRKF--APKIKVTKYIGTKQERNDIDLLQQQETTNIILTSYEISIR 285
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFD 1623
D + L ++ W Y I+DEGH +KNS+ + +K+L ++RL+L+GTP+QNN+ +LWSL +
Sbjct: 286 DFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSLLN 345
Query: 1624 FLMPGFLGTERQFQATYG----KPLVAARDSKCSAKDAEAGVLA--------MEALHKQV 1671
F++P FQ + L + + +D E L ++ LH +
Sbjct: 346 FILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLIKNLHTIL 405
Query: 1672 MPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLY 1707
PF+LRR K +V+ +LP K + ++ +Q K+Y
Sbjct: 406 KPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIY 441
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 387 (141.3 bits), Expect = 8.8e-32, P = 8.8e-32
Identities = 94/276 (34%), Positives = 155/276 (56%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L+ YQ +G+ WL L + L+GIL D+MGLGKTLQ + + S + E N I P L
Sbjct: 175 LKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFL-SHLIE----NGING--PFL 227
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDR--IALREQFDKHNVIITSYDVVRK 1563
++ P + + +W EI KF + +Y+G+ Q+R I L +Q + N+I+TSY++ +
Sbjct: 228 VVVPVSTLSNWYNEIRKF--APKIKVTKYIGTKQERNDIDLLQQQETTNIILTSYEISIR 285
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFD 1623
D + L ++ W Y I+DEGH +KNS+ + +K+L ++RL+L+GTP+QNN+ +LWSL +
Sbjct: 286 DFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSLLN 345
Query: 1624 FLMPGFLGTERQFQATYG----KPLVAARDSKCSAKDAEAGVLA--------MEALHKQV 1671
F++P FQ + L + + +D E L ++ LH +
Sbjct: 346 FILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLIKNLHTIL 405
Query: 1672 MPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLY 1707
PF+LRR K +V+ +LP K + ++ +Q K+Y
Sbjct: 406 KPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIY 441
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 404 (147.3 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 120/358 (33%), Positives = 181/358 (50%)
Query: 1419 EDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKT 1478
EDA+ Q + + D + + L+ LR YQ++G+NWLA L +GIL D+MGLGKT
Sbjct: 670 EDAETKVQE-EQLSVVDVPVPSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKT 728
Query: 1479 LQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSA 1538
+Q +++A E+ E P LI+ P++++ +W E ++F L Y GS
Sbjct: 729 IQTISLLAYLACEK------ENWGPHLIVVPTSVLLNWEMEFKRFAPG--FKVLTYYGSP 780
Query: 1539 QDRIALREQFDK---HNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAV 1595
Q R R+ ++K +V I SY +V +D + W Y +LDE H IKN +S A+
Sbjct: 781 QQRKEKRKGWNKPDAFHVCIVSYQLVVQDQHSFKRKRWQYMVLDEAHNIKNFRSTRWQAL 840
Query: 1596 KQLKAAHRLILSGTPIQNNITDLWSLFDFLMP----------GFLGTERQFQATYGKPLV 1645
RL+L+GTP+QNN+ +LWSL FLMP GF + FQ +G+P+
Sbjct: 841 LNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDA-FQQWFGRPVD 899
Query: 1646 AARDSKCS-AKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQL 1704
++ + +D E + LH+ + P+LLRR K +V +P K YC LS Q
Sbjct: 900 KIIETGQNFGQDKETKKTVAK-LHQVLRPYLLRRLKADVEKQMPAKYEHIVYCKLSKRQR 958
Query: 1705 KLYEKF-SGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLL 1761
LY+ F S +Q K ++S GN +S + L L K+C+HP L
Sbjct: 959 FLYDDFMSRAQTKATLAS------------GNFMS------IVNCLMQLRKVCNHPNL 998
Score = 45 (20.9 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 9/50 (18%), Positives = 24/50 (48%)
Query: 342 ELGPDGALNVEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAP 391
++ DG + D + + + + ++D + +DE E + + E++P
Sbjct: 465 QVNDDGRSSTPSSDSNDVLSESDDDMDDELSTSSDEDEEVDADVGLENSP 514
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 391 (142.7 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 106/342 (30%), Positives = 176/342 (51%)
Query: 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH 1502
K TL+ YQ +G+ WLA + + GIL D+MGLGKT+Q+ A + IAE
Sbjct: 532 KGTLKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFLCH-IAEHYGVWG----- 585
Query: 1503 PSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD-KH--------NV 1553
P L+I P++ + +W E+ +F+ + Y GS +R LR+ +D KH +V
Sbjct: 586 PFLVISPASTLHNWQQEMSRFVPD--FKVVPYWGSPAERKILRQFWDQKHLHTRDASFHV 643
Query: 1554 IITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQN 1613
+ITSY +V D Y ++ W Y +LDE IK++ S+ + +RL+LSGTPIQN
Sbjct: 644 VITSYQLVVSDYKYFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQN 703
Query: 1614 NITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMP 1673
++ +LW+L F+MP + +F + K + + ++K + + + LH + P
Sbjct: 704 SMAELWALLHFIMPTLFDSHDEFNEWFSKDIESHAENKTGIDEKQ-----ISRLHMILKP 758
Query: 1674 FLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGE 1733
F+LRR K +V ++L +KI YC L+ Q LY + K I ++ + G
Sbjct: 759 FMLRRIKKDVENELSDKIEIMVYCPLTIRQKLLYRAL---KQKIRIEDLLHLTS----GS 811
Query: 1734 GNNVSAKASTHVFQALQYLLKLCSHP-LLVLGD-KSPESLLC 1773
S+ +++++ + K+C+HP L D +SP + C
Sbjct: 812 TTTSSSSSASNLMNLVMQFRKVCNHPELFERRDARSPFFMRC 853
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 322 (118.4 bits), Expect = 1.2e-31, Sum P(4) = 1.2e-31
Identities = 68/179 (37%), Positives = 104/179 (58%)
Query: 1541 RIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKA 1600
R ++ ++ +V++T+Y ++ A L + W ILDEGH I+N + IT+ K+L+
Sbjct: 516 RKVVKRVVEEGHVLVTTYSGLQSYASLLIPVEWGGTILDEGHKIRNPNTSITMHAKELRT 575
Query: 1601 AHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAG 1660
HR+ILSGTP+QNN+T+LWSLFDF+ P LGT F+ + P+ + S +
Sbjct: 576 PHRIILSGTPMQNNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTA 635
Query: 1661 VLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEI 1719
E L + P+LL+R K +V +DLP+K Q +C L+ Q + YE F GS+ Q I
Sbjct: 636 AKCAETLKDAISPYLLQRFKIDVAADLPKKSEQVLFCRLTKPQRQAYEAFLGSEEMQSI 694
Score = 148 (57.2 bits), Expect = 1.2e-31, Sum P(4) = 1.2e-31
Identities = 37/130 (28%), Positives = 70/130 (53%)
Query: 1416 RNAEDAQFLEQ--LLDNSHIDD-YKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDD 1472
R++ED ++ + + H+D+ Y++ ++ L YQ+ G+ W+ L + ++ GI+ D+
Sbjct: 365 RDSEDEEWFKPHPTQPDLHLDNGYRIPGDIHPLLFDYQKTGVQWMWELHQQQVGGIIGDE 424
Query: 1473 MGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTL 1532
MGLGKT+QA A +A +R + P +++CP+T++ W E ++ +S L
Sbjct: 425 MGLGKTIQAIAFLAGLHYSKRLTK------PIIVVCPATVMKQWVNEFHRWWPPFRVSIL 478
Query: 1533 QYVGSAQDRI 1542
GS I
Sbjct: 479 HTSGSGMVNI 488
Score = 39 (18.8 bits), Expect = 1.2e-31, Sum P(4) = 1.2e-31
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 1707 YEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQ 1747
YE+ A +E + + D A+K + + V+ A+ FQ
Sbjct: 926 YEENRDKDAPKERDASYQRDVEAEKQDISKVTGVAAIEQFQ 966
Score = 38 (18.4 bits), Expect = 1.2e-31, Sum P(4) = 1.2e-31
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 349 LNVEFKDKDSITMKREREIDLNVQVPADE 377
L+ + +D+D++ R+ D + ADE
Sbjct: 37 LHADIRDQDALERDITRQADRLLMEQADE 65
Score = 37 (18.1 bits), Expect = 1.9e-31, Sum P(4) = 1.9e-31
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 1745 VFQALQYLLKLCSHP 1759
V + L K+C+HP
Sbjct: 701 VLYGVDILRKICNHP 715
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 419 (152.6 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 102/276 (36%), Positives = 148/276 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G++W+ L L+GIL D+MGLGKT+Q ++ +A S SI P L
Sbjct: 558 LREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISL----LAHMACSESIWG--PHL 611
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSYDVVR 1562
I+ P++++ +W E +K+ + L Y G+A++R R+ + K N V ITSY V
Sbjct: 612 IVVPTSVILNWEMEFKKWCPA--LKILTYFGTAKERAEKRKGWMKPNCFHVCITSYKTVT 669
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
+D Q W Y ILDE IKN KS+ A+ ++A RL+L+GTP+QN++ +LWSL
Sbjct: 670 QDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLM 729
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
FLMP + F+ + PL + + E + LHK + PF+LRR K E
Sbjct: 730 HFLMPTIFSSHDDFKDWFSNPLTGMMEG-----NMEFNAPLIGRLHKVLRPFILRRLKKE 784
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQE 1718
V LPEK C LS Q LY+ F ++ +E
Sbjct: 785 VEKQLPEKTEHIVNCSLSKRQRYLYDDFMSRRSTKE 820
Score = 46 (21.3 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 15/74 (20%), Positives = 33/74 (44%)
Query: 519 DYV--SDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIK 576
DYV + Q ++ A A K+ ET + + ++R ++G+
Sbjct: 508 DYVKLNSQDSDERQQELANIAEEALKFQPKGYTLETTQVKTPVPFLIRGQLREYQMVGLD 567
Query: 577 YLVAVRQEMLHGLL 590
++V + ++ L+G+L
Sbjct: 568 WMVTLYEKNLNGIL 581
Score = 42 (19.8 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 18/66 (27%), Positives = 26/66 (39%)
Query: 361 MKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNISIKVDDS-GCN 419
++R +I LN V +P M PP P+ I +K++DS G N
Sbjct: 123 IQRVEQIILNGSVEDILKDPRFAVMADLTKEPPPTPAPPPPIQKTMQPIEVKIEDSEGSN 182
Query: 420 LPAGSV 425
SV
Sbjct: 183 TAQPSV 188
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 419 (152.6 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 101/321 (31%), Positives = 170/321 (52%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MGLGKT+Q +++ + ++ P
Sbjct: 780 TLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLVEVKKIPG------PF 833
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN--VIITSYDVVR 1562
L+I P + V +W E EK+ + + Y G+ R ++ N +++T+++ V
Sbjct: 834 LVIVPLSTVTNWNLEFEKW--APSIKKITYKGTPNQRKVMQHDIRTGNFQLVLTTFEYVI 891
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQ-LKAAHRLILSGTPIQNNITDLWSL 1621
KD LG++ W + I+DEGH +KN+ SK++ + Q + +RLIL+GTP+QNN+ +LW+L
Sbjct: 892 KDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPELWAL 951
Query: 1622 FDFLMPGFLGTERQFQATYGKPLV-AARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTK 1680
+F++P + + F + P K + E +L + LHK + PFLLRR K
Sbjct: 952 LNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEET-LLVIRRLHKVLRPFLLRRLK 1010
Query: 1681 DEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAK 1740
+V DLP K+ + C SA+Q KLY++ +M+ + A+ G
Sbjct: 1011 KDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRY-------NMLYAGDPAN-GSVPVTIKN 1062
Query: 1741 ASTHVFQALQYLLKLCSHPLL 1761
A+ + Q L K+C+HP +
Sbjct: 1063 ANNQIMQ----LKKICNHPFV 1079
Score = 41 (19.5 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 149 KNPRERLARQKQNLKRRLGLDVCEQFVDLN 178
KNP++ +Q + ++RL L+ Q ++ N
Sbjct: 334 KNPKKPTKKQLREEEQRLALEKQRQELEQN 363
Score = 41 (19.5 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 1239 LIPDGPSNKKKIILAIESVRDPQILINNIQL 1269
++PD +NKK II V P I ++ +L
Sbjct: 453 VVPDKANNKKVII----PVTKPNIEVDTFEL 479
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 419 (152.6 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 101/321 (31%), Positives = 170/321 (52%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TL+ YQ +G+ W+ L L+GIL D+MGLGKT+Q +++ + ++ P
Sbjct: 780 TLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLVEVKKIPG------PF 833
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN--VIITSYDVVR 1562
L+I P + V +W E EK+ + + Y G+ R ++ N +++T+++ V
Sbjct: 834 LVIVPLSTVTNWNLEFEKW--APSIKKITYKGTPNQRKVMQHDIRTGNFQLVLTTFEYVI 891
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQ-LKAAHRLILSGTPIQNNITDLWSL 1621
KD LG++ W + I+DEGH +KN+ SK++ + Q + +RLIL+GTP+QNN+ +LW+L
Sbjct: 892 KDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPELWAL 951
Query: 1622 FDFLMPGFLGTERQFQATYGKPLV-AARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTK 1680
+F++P + + F + P K + E +L + LHK + PFLLRR K
Sbjct: 952 LNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEET-LLVIRRLHKVLRPFLLRRLK 1010
Query: 1681 DEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAK 1740
+V DLP K+ + C SA+Q KLY++ +M+ + A+ G
Sbjct: 1011 KDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRY-------NMLYAGDPAN-GSVPVTIKN 1062
Query: 1741 ASTHVFQALQYLLKLCSHPLL 1761
A+ + Q L K+C+HP +
Sbjct: 1063 ANNQIMQ----LKKICNHPFV 1079
Score = 41 (19.5 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 149 KNPRERLARQKQNLKRRLGLDVCEQFVDLN 178
KNP++ +Q + ++RL L+ Q ++ N
Sbjct: 334 KNPKKPTKKQLREEEQRLALEKQRQELEQN 363
Score = 41 (19.5 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 1239 LIPDGPSNKKKIILAIESVRDPQILINNIQL 1269
++PD +NKK II V P I ++ +L
Sbjct: 453 VVPDKANNKKVII----PVTKPNIEVDTFEL 479
>UNIPROTKB|F1P0A4 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 GO:GO:0005524
GO:GO:0003677 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016817 GeneTree:ENSGT00680000100002 EMBL:AADN02016239
EMBL:AADN02016240 IPI:IPI00819661 Ensembl:ENSGALT00000038610
ArrayExpress:F1P0A4 Uniprot:F1P0A4
Length = 469
Score = 354 (129.7 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 85/267 (31%), Positives = 141/267 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ +++ R P +
Sbjct: 165 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG------PHM 218
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ + + +G R A +R+ + +V +TSY+++
Sbjct: 219 VLVPKSTLHNWMNEFKRWVPT--LRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLI 276
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K +RL+L+GTP+QNN+ +LW+L
Sbjct: 277 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 336
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+ D + +E LH + PFLLRR K +
Sbjct: 337 NFLLPDVFNSSEDFDSWF--------DTNNCLGDQKL----VERLHMVLRPFLLRRIKAD 384
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y +
Sbjct: 385 VEKSLPPKKEVKIYVGLSKMQREWYTR 411
Score = 37 (18.1 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 564 EW-EIRHGSLLGIKYLVAVRQEMLHGLL 590
+W ++R + G+ +L+++ + ++G+L
Sbjct: 161 KWGKLRDYQVRGLNWLISLYENGINGIL 188
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 418 (152.2 bits), Expect = 1.8e-31, Sum P(3) = 1.8e-31
Identities = 108/321 (33%), Positives = 172/321 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH-PS 1504
L+ YQ +G+NWLA L ++GIL D+MGLGKT+Q+ A++A +AER E I P
Sbjct: 520 LKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAH-LAER------ENIWGPF 572
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRI---ALREQFDKHNVIITSYDVV 1561
LII P++ + +W E +F V L Y G+ DR L Q +V+ITSY +V
Sbjct: 573 LIISPASTLNNWHQEFTRF--VPKFKVLPYWGNPHDRKKKKTLYTQDAPFHVVITSYQLV 630
Query: 1562 RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSL 1621
+D Y ++ W Y +LDE +K+S S + Q + +RL+L+GTPIQN + +LW+L
Sbjct: 631 VQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWAL 690
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
F+MP + +F + K + + ++K SA D + LH + PF+LRR K
Sbjct: 691 LHFIMPTLFDSHEEFNEWFSKDIESHAENK-SAIDENQ----LSRLHMILKPFMLRRIKK 745
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
+V ++L +KI YC L++ Q LY Q + + + +++ G+ A+
Sbjct: 746 DVENELSDKIEILMYCQLTSRQKLLY---------QALKNKISIEDLLQSSMGSTQQAQN 796
Query: 1742 STH-VFQALQYLLKLCSHPLL 1761
+T + + K+C+HP L
Sbjct: 797 TTSSLMNLVMQFRKVCNHPEL 817
Score = 41 (19.5 bits), Expect = 1.8e-31, Sum P(3) = 1.8e-31
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 578 LVAVRQEMLHGLLGYVLPACRAGLEDP 604
L+ V++E + LLG A +GL +P
Sbjct: 69 LIQVKEEPPNSLLGETSGASSSGLLNP 95
Score = 40 (19.1 bits), Expect = 1.8e-31, Sum P(3) = 1.8e-31
Identities = 21/97 (21%), Positives = 41/97 (42%)
Query: 665 QEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSML--APRLWPFMRHSITS 722
QEE++ K+ ++++++ D+ V + E D+ +N + L A + + S
Sbjct: 413 QEEILRKLEDSSTQRQIDIGGGVVVNITQE--DYDSNHFKAQALKNAENAYHIHQARTRS 470
Query: 723 VRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGD 759
A + L A A+ SG F S+ L +
Sbjct: 471 FDEDAKESRAAALRA------ADKSGSGFGESYSLAN 501
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 414 (150.8 bits), Expect = 2.3e-31, Sum P(4) = 2.3e-31
Identities = 106/311 (34%), Positives = 161/311 (51%)
Query: 1414 LSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDM 1473
+S+ A +Q L+ S++ K+ LK LR YQ G++WL L L+GIL D+M
Sbjct: 750 VSKKANSSQPTGFTLNTSNVRT-KVPFLLKFPLREYQHIGLDWLVSLYEKNLNGILADEM 808
Query: 1474 GLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQ 1533
GLGKT+ +++A ++ P LI+ PS+++ +W E +++ + T
Sbjct: 809 GLGKTIMTISLIAYLAVQKGVWG------PHLIVVPSSVLFNWEMEFKRWCPGLKIFT-- 860
Query: 1534 YVGSAQDRIALREQFDKHN---VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSK 1590
Y G+++DR A R+ + K N V ITSY +V D + W Y ILDE H+IKN K++
Sbjct: 861 YHGTSRDRKANRKGWSKSNAFHVCITSYSMVMSDHLIFRRKKWVYMILDEAHVIKNFKTQ 920
Query: 1591 ITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDS 1650
+ RL+L+GTP+QNN+ +LWSL FLMP + R+FQ + P+ +
Sbjct: 921 RWQNMLHFNTERRLLLTGTPLQNNLMELWSLMHFLMPDIFQSHREFQDWFSNPVTGMIEG 980
Query: 1651 KCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKF 1710
D ++ LH + PFLLRR K +V +P K C +S Q LYE+F
Sbjct: 981 ---GDDVNEDII--NRLHAVLRPFLLRRLKKDVEKQMPPKHTHIVPCSMSRRQKFLYEEF 1035
Query: 1711 SGSQAKQEISS 1721
S + Q S
Sbjct: 1036 INSSSTQSTLS 1046
Score = 67 (28.6 bits), Expect = 2.3e-31, Sum P(4) = 2.3e-31
Identities = 36/151 (23%), Positives = 68/151 (45%)
Query: 351 VEFKDK---DSIT-MKREREIDLNVQVPADEPEPLLKKMKFED------APPPLMDTMVS 400
V++KDK DSI ++R+++++L V L + ++ P L++
Sbjct: 583 VQYKDKIHQDSINKIERDKQLELIVGKTEAYSNLLAENLRGHHHHHSTITPKDLLNQFDH 642
Query: 401 PVNCDGCNISIK-----VDDSGCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAID- 454
V+ DG I D+S C+L ++N + D ++E + L+ L S+ +D
Sbjct: 643 DVDEDGNEIEYNDDFNTSDESSCDLSDDNINEEEDDDGEQLESKEYLEELKLESEMPLDE 702
Query: 455 ILEPRGQSGEKGDFLNSETLKNLPENSELMN 485
+L+ Q EK D + + N +N+ N
Sbjct: 703 LLKKLDQ--EKSDNDDDDNNNNEDDNNNNNN 731
Score = 44 (20.5 bits), Expect = 2.3e-31, Sum P(4) = 2.3e-31
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 1702 VQLKLYEKFSG-SQAKQEISSMVKVDESADKGEGNNVSAKA 1741
+Q Y + + +++K +IS KV + + E NN + K+
Sbjct: 2385 IQNSNYSRINRVTRSKSQISERYKVIQKENNNENNNGNNKS 2425
Score = 41 (19.5 bits), Expect = 8.5e-29, Sum P(4) = 8.5e-29
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 849 DSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNTRVVT 888
D S ++D + GD N++ T+ D S TN T
Sbjct: 18 DESMNID---DNGGDQIHNALSPTLSEDTVTSNTNPTTTT 54
Score = 39 (18.8 bits), Expect = 7.6e-31, Sum P(4) = 7.6e-31
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 1735 NNVSAKASTHVFQALQYLLKLCSHP 1759
+ +S+ + + L L K+C+HP
Sbjct: 1043 STLSSGSFFSIINILMQLRKVCNHP 1067
Score = 38 (18.4 bits), Expect = 8.5e-29, Sum P(4) = 8.5e-29
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 1032 KLQLLGS------NSDGSESLSRQMLDDIESIKQRML---TTSGYLKCV 1071
KLQL+ NS+G S+ +D++ S+ + L TTS + +
Sbjct: 214 KLQLINGKVEEFCNSNGFSFYSQIFIDNLSSLTSKSLQPTTTSSKIPTI 262
Score = 37 (18.1 bits), Expect = 2.3e-31, Sum P(4) = 2.3e-31
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 204 TSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSKS 249
T+ + + +S PS+ + A N K++++ +S ++KS
Sbjct: 52 TTTTPRQTRSSLSLSSPSIDNTIALATATNSSKKRSRSNSTSKNKS 97
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 411 (149.7 bits), Expect = 2.7e-31, Sum P(3) = 2.7e-31
Identities = 106/325 (32%), Positives = 174/325 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH-PS 1504
L+ YQ +G+NWLA L ++GIL D+MGLGKT+Q+ A++A +AER E I P
Sbjct: 519 LKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAH-LAER------ENIWGPF 571
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH---------NVII 1555
LII P++ + +W E +F V L Y G+ DR +R+ + + +V+I
Sbjct: 572 LIISPASTLNNWHQEFSRF--VPKFKVLPYWGNPHDRKVIRKFWSQKTLYTQNAPFHVVI 629
Query: 1556 TSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNI 1615
TSY +V +D Y ++ W Y +LDE +K+S S + Q + +RL+L+GTPIQN +
Sbjct: 630 TSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSTSVRWKILLQFQCRNRLLLTGTPIQNTM 689
Query: 1616 TDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675
+LW+L F+MP + +F + K + + ++K SA D + LH + PF+
Sbjct: 690 AELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENK-SAIDENQ----LSRLHMILKPFM 744
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGN 1735
LRR K +V ++L +KI YC L++ Q LY Q + + + +++ G+
Sbjct: 745 LRRIKKDVENELSDKIEILTYCQLTSRQRLLY---------QALKNKISIEDLLQSSMGS 795
Query: 1736 NVSAKASTH-VFQALQYLLKLCSHP 1759
A ++T + + K+C+HP
Sbjct: 796 AQQAHSTTSSLMNLVMQFRKVCNHP 820
Score = 49 (22.3 bits), Expect = 2.7e-31, Sum P(3) = 2.7e-31
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 231 ELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPF 275
EL + R K + QSK S D E+ H Q+ +T S DPF
Sbjct: 161 ELQDMLRLHKFTRLHQSKFHS---DRELQHYQHYSTGLLSTHDPF 202
Score = 40 (19.1 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 237 RKAKISSKDQSKSWSEDGDME 257
+K IS +D++K DG+ E
Sbjct: 82 KKDHISPEDETKDSCRDGETE 102
Score = 38 (18.4 bits), Expect = 2.7e-31, Sum P(3) = 2.7e-31
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 460 GQSGEKGDFLNSETLKNLPENS 481
G+ GD E L+ L +NS
Sbjct: 402 GKQNAGGDCTQEEILRKLEDNS 423
Score = 38 (18.4 bits), Expect = 2.7e-31, Sum P(3) = 2.7e-31
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 664 SQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPY 703
+QEE++ K+ +S+++ D+ V + V + D+ ++ Y
Sbjct: 411 TQEEILRKLEDNSSQRQIDIGGGVMVN-VSQ-EDYDSDYY 448
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 336 (123.3 bits), Expect = 3.4e-31, Sum P(4) = 3.4e-31
Identities = 68/172 (39%), Positives = 103/172 (59%)
Query: 1548 FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILS 1607
F + +++IT+Y +R D + W YC+LDEGH I+N S+I+++ KQ++ +R+ILS
Sbjct: 410 FTRGHILITTYAGLRIYGDLILPREWGYCVLDEGHKIRNPDSEISISCKQIRTVNRIILS 469
Query: 1608 GTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL 1667
GTPIQNN+T+LW+LFDF+ PG LGT FQ + P+ + S + L
Sbjct: 470 GTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYANASNVQVQTAYKCACML 529
Query: 1668 HKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEI 1719
+ P+LLRR K +V +DLP+K Q +C L+ +Q K Y+ F Q+I
Sbjct: 530 RDLISPYLLRRMKLDVAADLPKKSEQVLFCKLTPLQRKAYQDFLQGSDMQKI 581
Score = 124 (48.7 bits), Expect = 3.4e-31, Sum P(4) = 3.4e-31
Identities = 33/109 (30%), Positives = 55/109 (50%)
Query: 1441 ELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEE 1500
+++ L RYQ + WL L + GI+ D+MGLGKT+Q + S ++ S ++
Sbjct: 272 DIRPHLFRYQVTCVQWLWELYCQEAGGIIGDEMGLGKTIQ----IVSFLSSLHHSGKFQK 327
Query: 1501 IHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD 1549
P+LI+CP+TL+ W E + + L GS Q + Q++
Sbjct: 328 --PALIVCPATLMKQWVNEFHTWWAPLRVVVLHATGSGQRASREKRQYE 374
Score = 39 (18.8 bits), Expect = 3.4e-31, Sum P(4) = 3.4e-31
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1749 LQYLLKLCSHPLLV 1762
+ L K+C+HP LV
Sbjct: 592 IDILRKICNHPDLV 605
Score = 37 (18.1 bits), Expect = 3.4e-31, Sum P(4) = 3.4e-31
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 673 VGATSKQEFDLNEVVRADDV 692
+GA S +E + E++R V
Sbjct: 114 IGAFSTEELERQELIRTGKV 133
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 393 (143.4 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
Identities = 96/269 (35%), Positives = 146/269 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
+R YQ EG+ WL L ++GIL D+MGLGKT+Q A +A I +R P L
Sbjct: 223 MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMI-QRGVPG------PFL 275
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDK-------HNVIITSY 1558
+ P + + +W E ++F + T+ Y GS Q+R L K H V+ITS+
Sbjct: 276 VCGPLSTLPNWMAEFQRFTPE--IPTMLYHGSQQERRKLVNHIHKRKGTLQIHPVVITSF 333
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
++ +D + L W Y I+DEGH IKN K ++ +K+ A ++L+L+GTP+QNN+++L
Sbjct: 334 EIAMRDRNVLQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSEL 393
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL +FL+P + F++ + ++ AK+ E VL M LH+ + PFLLRR
Sbjct: 394 WSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM--LHQILTPFLLRR 451
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLY 1707
K +V ++P K Y LS Q Y
Sbjct: 452 LKSDVALEVPPKREVVVYAPLSKKQEVFY 480
Score = 41 (19.5 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 1736 NVSAKASTHV-FQALQYLL-KLCSHPLLV 1762
N+ ++ ++ Q + LL K C+HP L+
Sbjct: 549 NIPVESEVNLKLQNIMMLLRKCCNHPYLI 577
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 383 (139.9 bits), Expect = 4.9e-31, P = 4.9e-31
Identities = 108/306 (35%), Positives = 166/306 (54%)
Query: 1397 LLPLARGVSPPTGLTEGLSRNAE--DAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGI 1454
+ P + +S L E L + AE D +F + + NS + Y+ EL L +Q+EGI
Sbjct: 50 IFPTKKVISRIQKLQEALEQLAEEEDDEFTD--VCNSGLLLYR---ELYEKLFEHQKEGI 104
Query: 1455 NWLAFL-KRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV 1513
+L L K + GIL DDMGLGKT+Q A + S + + N + L+I P+ L+
Sbjct: 105 AFLYSLYKNGRKGGILADDMGLGKTVQIIAFL-SGMFDASLVNHV------LLIMPTNLI 157
Query: 1514 GHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN-VIITSYDVVRKD----ADYL 1568
W E K+ + T + S +RI + + N V+IT+Y ++ + A +
Sbjct: 158 NTWVKEFAKWTPGMRVKTF-HGSSKNERIRNLTRIQQRNGVVITTYQMLLNNWQQLASFN 216
Query: 1569 GQ-LLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMP 1627
GQ +W+Y ILDE H IK++ +K V + + A++RL+L+GTPIQNN+ +LWSLFDF
Sbjct: 217 GQAFVWDYVILDEAHKIKSASTKSAVCARAVPASNRLLLTGTPIQNNLQELWSLFDFACQ 276
Query: 1628 G-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEV--- 1683
G LGT + F+ Y P++ AR+ + + G E L + + P+ LRRTK+EV
Sbjct: 277 GSLLGTLKTFKMEYENPIIRAREKDATPGEKALGFKMSENLMEIIKPYFLRRTKEEVHMK 336
Query: 1684 LSDLPE 1689
+D PE
Sbjct: 337 KADKPE 342
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 387 (141.3 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 90/252 (35%), Positives = 142/252 (56%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
+R YQ EG+ WL L ++GIL D+MGLGKT+Q A +A I +R P L
Sbjct: 206 MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMI-QRGVPG------PFL 258
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDK-------HNVIITSY 1558
+ P + + +W E ++F + TL Y G+ +DR L + K H V++TS+
Sbjct: 259 VCGPLSTLPNWMAEFKRFTPE--IPTLLYHGTREDRRKLVKNIHKRQGTLQIHPVVVTSF 316
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
++ +D + L W Y I+DEGH IKN K ++ +K+ A ++L+L+GTP+QNN+++L
Sbjct: 317 EIAMRDQNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSEL 376
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL +FL+P + F++ + ++ AK+ E VL M LH+ + PFLLRR
Sbjct: 377 WSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM--LHQILTPFLLRR 434
Query: 1679 TKDEVLSDLPEK 1690
K +V ++P K
Sbjct: 435 LKSDVALEVPPK 446
Score = 45 (20.9 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 13/62 (20%), Positives = 30/62 (48%)
Query: 1669 KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES 1728
K++M L R + + EK+I D +L + L ++ S+ + + + K+ E+
Sbjct: 752 KELMELLKSRDYEREVKGSREKVISDEDLELLLDRSDLIDQMKASRPIKGKTGIFKILEN 811
Query: 1729 AD 1730
++
Sbjct: 812 SE 813
Score = 44 (20.5 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 1713 SQAKQEISSMV-KVDESADKGEGN-NVSAKASTHVFQALQYLLKLCSHPLLV 1762
S+ ++ IS + +V+ EGN + ++ + + + L K C+HP ++
Sbjct: 509 SELEKLISQIQPEVNRERTVVEGNIPIESEVNLKLRNIMMLLRKCCNHPYMI 560
>UNIPROTKB|G3N326 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 EMBL:DAAA02057908
Ensembl:ENSBTAT00000063921 Uniprot:G3N326
Length = 934
Score = 395 (144.1 bits), Expect = 8.0e-31, Sum P(3) = 8.0e-31
Identities = 98/280 (35%), Positives = 153/280 (54%)
Query: 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
L+ LR YQ G++WL + KL+GIL D+MGLGKT+Q +++A E+ N
Sbjct: 604 LRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEK--GNW---- 657
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSY 1558
P LII P++++ +W E++++ L Y G+ ++R R+ + K N V ITSY
Sbjct: 658 GPHLIIVPTSVMLNWEMELKRWCPS--FKILTYYGAQKERKLKRQGWTKPNAFHVCITSY 715
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
+V +D + W Y ILDE IKN KS+ ++ + RL+L+GTP+QN++ +L
Sbjct: 716 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMEL 775
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL FLMP + R+F+ + PL + +++ G++ + LHK + PFLLRR
Sbjct: 776 WSLMHFLMPHVFQSHREFKEWFSNPLTGMIEG---SQEYNEGLV--KRLHKVLRPFLLRR 830
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQE 1718
K +V +P+K C LS Q LY+ F +E
Sbjct: 831 VKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKE 870
Score = 47 (21.6 bits), Expect = 8.0e-31, Sum P(3) = 8.0e-31
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 229 ARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDS 288
A E ++ S D ++ SED D E H++ T + S + S +++ +
Sbjct: 470 ATEAEEAPQEDSSSQSDSAEEQSEDEDEE--HSEEEETSESSESEESESEESEESQSQSQ 527
Query: 289 SEHE 292
++ E
Sbjct: 528 ADEE 531
Score = 46 (21.3 bits), Expect = 1.0e-29, Sum P(5) = 1.0e-29
Identities = 24/133 (18%), Positives = 55/133 (41%)
Query: 351 VEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNIS 410
V+FK + + KR++ +DL++ + E + + PL + C G + +
Sbjct: 195 VQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLS-QSLNQPLASSKAGSSPCLGSSSA 253
Query: 411 IKVDDS-GCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGE----K 465
G + +++G D + E E + + + ++ + E + + E +
Sbjct: 254 ASSPPPPGSRMDDEAIDG--DFQPQEEEEEDDEETIEVEEQQEGNDAETQRREIELLRRE 311
Query: 466 GDFLNSETLKNLP 478
G+ E L++LP
Sbjct: 312 GELPLEELLRSLP 324
Score = 40 (19.1 bits), Expect = 8.0e-31, Sum P(3) = 8.0e-31
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 1745 VFQALQYLLKLCSHPLL 1761
V L L K+C+HP L
Sbjct: 880 VINILMQLRKVCNHPNL 896
Score = 40 (19.1 bits), Expect = 1.0e-29, Sum P(5) = 1.0e-29
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 996 QLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSE 1044
QL ++ + +E+ E+ +E L A ++AS GS S E
Sbjct: 405 QLEGEVDHAMELSELAREGELSMEELLQRYAGAYASDASAPGSGSSEEE 453
Score = 37 (18.1 bits), Expect = 1.0e-29, Sum P(5) = 1.0e-29
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 199 DRRFYTSASAHNIQRLVSSMVPSVISKRPSAR--ELNMLKRKAKISSKDQSKSWS 251
+RR+ A + R+V K AR E L+R A +KD + WS
Sbjct: 136 ERRWKRGV-ARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASAMAKDVRQFWS 189
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 412 (150.1 bits), Expect = 8.2e-31, Sum P(3) = 8.2e-31
Identities = 107/327 (32%), Positives = 174/327 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH-PS 1504
L+ YQ +G+NWLA L ++GIL D+MGLGKT+Q+ A++A +AER E I P
Sbjct: 520 LKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAH-LAER------ENIWGPF 572
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH---------NVII 1555
LII P++ + +W E +F V L Y G+ DR +R + + +V+I
Sbjct: 573 LIISPASTLNNWHQEFTRF--VPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVI 630
Query: 1556 TSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNI 1615
TSY +V +D Y ++ W Y +LDE +K+S S + Q + +RL+L+GTPIQN +
Sbjct: 631 TSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTM 690
Query: 1616 TDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675
+LW+L F+MP + +F + K + + ++K SA D + LH + PF+
Sbjct: 691 AELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENK-SAIDENQ----LSRLHMILKPFM 745
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGN 1735
LRR K +V ++L +KI YC L++ Q LY Q + + + +++ G+
Sbjct: 746 LRRIKKDVENELSDKIEILTYCQLTSRQKLLY---------QALKNKISIEDLLQSSMGS 796
Query: 1736 NVSAKASTH-VFQALQYLLKLCSHPLL 1761
A+ +T + + K+C+HP L
Sbjct: 797 TQQAQNTTSSLMNLVMQFRKVCNHPEL 823
Score = 41 (19.5 bits), Expect = 8.2e-31, Sum P(3) = 8.2e-31
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 578 LVAVRQEMLHGLLGYVLPACRAGLEDP 604
L+ V++E + LLG A +GL +P
Sbjct: 69 LIQVKEEPPNSLLGETSGASSSGLLNP 95
Score = 40 (19.1 bits), Expect = 8.2e-31, Sum P(3) = 8.2e-31
Identities = 21/97 (21%), Positives = 41/97 (42%)
Query: 665 QEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSML--APRLWPFMRHSITS 722
QEE++ K+ ++++++ D+ V + E D+ +N + L A + + S
Sbjct: 413 QEEILRKLEDSSTQRQIDIGGGVVVNITQE--DYDSNHFKAQALKNAENAYHIHQARTRS 470
Query: 723 VRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGD 759
A + L A A+ SG F S+ L +
Sbjct: 471 FDEDAKESRAAALRA------ADKSGSGFGESYSLAN 501
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 412 (150.1 bits), Expect = 8.3e-31, Sum P(3) = 8.3e-31
Identities = 107/327 (32%), Positives = 173/327 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH-PS 1504
L+ YQ +G+NWLA L ++GIL D+MGLGKT+Q+ A++A +AER E I P
Sbjct: 523 LKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAH-LAER------ENIWGPF 575
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH---------NVII 1555
LII P++ + +W E +F V L Y G+ DR +R+ + + +V+I
Sbjct: 576 LIISPASTLNNWHQEFARF--VPKFKVLPYWGNPHDRKVIRKFWSQKTLYTQDAPFHVVI 633
Query: 1556 TSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNI 1615
TSY +V +D Y ++ W Y +LDE +K+S S + Q + +RL+L+GTPIQN +
Sbjct: 634 TSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTM 693
Query: 1616 TDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675
+LW+L F+MP + +F + K + + ++K SA D + LH + PF+
Sbjct: 694 AELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENK-SAIDENQ----LSRLHMILKPFM 748
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGN 1735
LRR K +V ++L +KI YC ++ Q LY Q + + + +D+ G
Sbjct: 749 LRRIKKDVENELSDKIEILMYCQQTSRQKLLY---------QALKNKISIDDLLQSSMGT 799
Query: 1736 NVSAKASTH-VFQALQYLLKLCSHPLL 1761
A+ +T + + K+C+HP L
Sbjct: 800 TQQAQTTTSSLMNLVMQFRKVCNHPEL 826
Score = 44 (20.5 bits), Expect = 8.3e-31, Sum P(3) = 8.3e-31
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 770 LESNEEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVAL 829
L+ N + Q D + ++ + P L + G S L+T L +L
Sbjct: 59 LDDNPLLPQSGDALMQVKEEPPNALLGESSGVGNSG--VLSTHSLNGVLQTESKSEKGSL 116
Query: 830 PRKSHFKAAAK-MRAVKLENDSSGSVDLPQERNGD 863
S K + K ++++ L +DSS + D P + +G+
Sbjct: 117 YNFSKLKKSRKWLKSILLSDDSSDT-DSPSDEDGE 150
Score = 42 (19.8 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 665 QEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSML 708
QEE++ K+ ++++++ D+ V + E D+ +N Y L
Sbjct: 416 QEEILRKLEDSSTQRQIDIGGGVVVNITQE--DYDSNYYKAQAL 457
Score = 38 (18.4 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 77 LTTLKELFSCVETKMSEVGISGIVEDMV 104
L T EL++ ++ ++G GI E+++
Sbjct: 393 LITQTELYAHFMSRKRDIGHDGIQEEIL 420
Score = 37 (18.1 bits), Expect = 8.3e-31, Sum P(3) = 8.3e-31
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 1416 RNAEDAQFLEQLLDNSHIDDYK 1437
+NAEDA + Q S +D K
Sbjct: 458 KNAEDAYQIHQARTRSFDEDAK 479
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 403 (146.9 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 102/349 (29%), Positives = 182/349 (52%)
Query: 1429 DNSHIDDYKLGTELKV------------TLRRYQQEGINWLAFLKRFKLHGILCDDMGLG 1476
DNS++D Y + +K TL+ YQ +G+ W+ L L+GIL D+MGLG
Sbjct: 738 DNSNVDYYNVAHRIKEDIKKQPSILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLG 797
Query: 1477 KTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVG 1536
KT+Q +++ + E + P L+I P + + +W+ E K+ + T+ + G
Sbjct: 798 KTIQTISLLTY-LYEMKNIRG-----PYLVIVPLSTLSNWSSEFAKWAPT--LRTISFKG 849
Query: 1537 SAQDRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVA 1594
S +R A + + + +V++T+++ + K+ L ++ W + I+DEGH +KN++SK+++
Sbjct: 850 SPNERKAKQAKIRAGEFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLT 909
Query: 1595 VK-QLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLV-AARDSKC 1652
+ A +RLIL+GTP+QNN+ +LW+L +F++P + + F + P K
Sbjct: 910 LNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKI 969
Query: 1653 SAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSG 1712
+ E +L + LHK + PFLLRR K +V +LP+K+ + C +SA+Q +Y++
Sbjct: 970 ELSEEET-LLVIRRLHKVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQ--- 1025
Query: 1713 SQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLL 1761
M+K G+ NN + L K+C+HP +
Sbjct: 1026 ---------MLKY-RRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFV 1064
Score = 38 (18.4 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 38 HPQDLNSLLRKVSQYLRSK 56
HP D +L +S++ R +
Sbjct: 286 HPPDFKRMLLSLSEFARRR 304
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 379 (138.5 bits), Expect = 1.0e-30, P = 1.0e-30
Identities = 99/307 (32%), Positives = 165/307 (53%)
Query: 1416 RNAEDAQFLEQLLDNSHIDD----YKLGTE----LKV-TLRRYQQEGINWLAFLKRFKLH 1466
R E + E L D H DD + + TE +K LR YQ +G+NWL L +L
Sbjct: 100 RKTEKEEDAELLQDEEHQDDEDHQHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRLS 159
Query: 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI-D 1525
GIL D+MGLGKTLQ S + R I+ P ++I P + + +W E K+ D
Sbjct: 160 GILADEMGLGKTLQT----ISFLGYLRYIKHIDG--PFIVIVPKSTLDNWRREFAKWTPD 213
Query: 1526 VSLMSTLQYVGSAQDRIAL-REQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGH 1582
V+++ LQ G + R ++ ++Q K +V+ITS++++ ++ L + W Y ++DE H
Sbjct: 214 VNVV-VLQ--GDKEQRASIIKDQLYTAKFDVLITSFEMILREKSALQKFRWEYIVVDEAH 270
Query: 1583 IIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGK 1642
IKN S ++ ++ + +RL+++GTP+QNN+ +LW+L +FL+P G QF +
Sbjct: 271 RIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDN 330
Query: 1643 PLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAV 1702
D + + + A+ LH+ + PFLLRR K +V L KI + Y ++ +
Sbjct: 331 QNSEELDEEEKQRRQDK---AVSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDM 387
Query: 1703 QLKLYEK 1709
Q++ Y++
Sbjct: 388 QVEWYKR 394
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 379 (138.5 bits), Expect = 1.0e-30, P = 1.0e-30
Identities = 99/307 (32%), Positives = 165/307 (53%)
Query: 1416 RNAEDAQFLEQLLDNSHIDD----YKLGTE----LKV-TLRRYQQEGINWLAFLKRFKLH 1466
R E + E L D H DD + + TE +K LR YQ +G+NWL L +L
Sbjct: 100 RKTEKEEDAELLQDEEHQDDEDHQHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRLS 159
Query: 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI-D 1525
GIL D+MGLGKTLQ S + R I+ P ++I P + + +W E K+ D
Sbjct: 160 GILADEMGLGKTLQT----ISFLGYLRYIKHIDG--PFIVIVPKSTLDNWRREFAKWTPD 213
Query: 1526 VSLMSTLQYVGSAQDRIAL-REQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGH 1582
V+++ LQ G + R ++ ++Q K +V+ITS++++ ++ L + W Y ++DE H
Sbjct: 214 VNVV-VLQ--GDKEQRASIIKDQLYTAKFDVLITSFEMILREKSALQKFRWEYIVVDEAH 270
Query: 1583 IIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGK 1642
IKN S ++ ++ + +RL+++GTP+QNN+ +LW+L +FL+P G QF +
Sbjct: 271 RIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDN 330
Query: 1643 PLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAV 1702
D + + + A+ LH+ + PFLLRR K +V L KI + Y ++ +
Sbjct: 331 QNSEELDEEEKQRRQDK---AVSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDM 387
Query: 1703 QLKLYEK 1709
Q++ Y++
Sbjct: 388 QVEWYKR 394
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 395 (144.1 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 86/252 (34%), Positives = 144/252 (57%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
+R YQ EGI WL L ++GIL D+MGLGKT+Q A +A + E++ + P L
Sbjct: 233 MRWYQVEGIEWLRMLWENGINGILADEMGLGKTIQCIAHIAM-MVEKKV------LGPFL 285
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN-------VIITSY 1558
++ P + + +W E ++F +S L Y G ++R+ L ++ +H V++TS+
Sbjct: 286 VVAPLSTLPNWISEFKRFTPE--VSVLLYHGPQKERLDLVKKIRQHQGSLRMCPVVVTSF 343
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
++ +D +L + WNY I+DEGH IKN ++ +K L ++L+L+GTP+QNN+++L
Sbjct: 344 EIAMRDRKFLQRFHWNYLIVDEGHRIKNLNCRLVQELKMLPTDNKLLLTGTPLQNNLSEL 403
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL +FL+P + F++ + + + A + E +L M LH + PFLLRR
Sbjct: 404 WSLLNFLLPDVFDDLKSFESWFDISTITSDAENIVANEREQNILHM--LHLILTPFLLRR 461
Query: 1679 TKDEVLSDLPEK 1690
K +V ++P K
Sbjct: 462 LKSDVTLEVPPK 473
Score = 45 (20.9 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESAD-KGE 1733
++ TK +V+SD +I+ DR DL Q K + KQE + KV E+ D GE
Sbjct: 800 VKGTKGKVISDKDLQILLDR-SDLMD-QAK-------KRVKQEKDGVFKVIEAKDDNGE 849
Score = 38 (18.4 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 7/34 (20%), Positives = 20/34 (58%)
Query: 659 LAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDV 692
+A++ ++EE++ K ++E + + A+D+
Sbjct: 150 IADVMTKEEIMSKAKKPKMEEEAQASVKLEAEDI 183
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 399 (145.5 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 109/330 (33%), Positives = 178/330 (53%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH- 1502
V L+ YQ G+NWL L + KL GIL D+MGLGKT Q A A +E+ H
Sbjct: 548 VQLKSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAFFAL---------LLEQGHH 598
Query: 1503 -PSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD----KHNVIITS 1557
P L++ PS+ + +W E+ +F SL Y GS Q+R +RE + K+++++T+
Sbjct: 599 GPHLVVVPSSTLENWLRELARFCP-SLRVE-PYYGSQQERANIREAIEENEIKYDILVTT 656
Query: 1558 YDVV---RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNN 1614
Y + ++D +L ++ C+ DEGH +KN S+ + L A RL+L+GTP+QNN
Sbjct: 657 YQLATNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTGTPLQNN 716
Query: 1615 ITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH--KQVM 1672
+ +L SL F++P ++ K A D+ D E +L+ + + K +M
Sbjct: 717 LKELVSLLAFILPNMFDSDMDDLDVIFKAKPTA-DA-----DIEQALLSKQRISRAKTMM 770
Query: 1673 -PFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADK 1731
PF+LRR K++VL+DLP+K +C LS QL++Y +++ Q Q++ K ++ +
Sbjct: 771 TPFVLRRRKNQVLNDLPKKTQIIEHCKLSENQLEIYNRYAALQKNQQLRRDDKRNKRSKN 830
Query: 1732 GEGNNVSAKASTHVFQALQYLLKLCSHPLL 1761
E ++ + ++ HV L L K +H LL
Sbjct: 831 DEESDGKSLSAGHV---LMQLRKAANHALL 857
Score = 38 (18.4 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 1260 PQILINNIQLVRSIAP 1275
P +I ++Q +RS P
Sbjct: 257 PNAIIRSVQWIRSFVP 272
Score = 38 (18.4 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
+++ L+G+ +L + Q+ L G+L
Sbjct: 549 QLKSYQLVGVNWLHLLYQQKLSGIL 573
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 375 (137.1 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 113/365 (30%), Positives = 181/365 (49%)
Query: 1414 LSRNAEDAQFLEQLLDNSHIDDYKLGTEL--KVT---LRRYQQEGINWLAFLKRFKLHGI 1468
+SR+ ED + + L KL EL +T L+ YQ +G+ WL L + L+GI
Sbjct: 166 ISRSKEDGETINSDLTEEETV-IKLQNELCPLLTGGQLKSYQLKGVKWLISLWQNGLNGI 224
Query: 1469 LCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSL 1528
L D MGLGKT+Q ++ N ++ P L+I P + + +W EI +F
Sbjct: 225 LADQMGLGKTIQTIGFLS-----HLKGNGLDG--PYLVIAPLSTLSNWFNEIARF--TPS 275
Query: 1529 MSTLQYVGSAQDRIALREQF------DKHNVIITSYDVVRKDAD-YLGQLLWNYCILDEG 1581
++ + Y G R LR + K ++ITSY+V DA L W Y ++DEG
Sbjct: 276 INAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKRILRHYPWKYVVIDEG 335
Query: 1582 HIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYG 1641
H +KN K K+ +K LK ++L+L+GTP+QNN+++LWSL +F++P + +F++ +
Sbjct: 336 HRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFD 395
Query: 1642 KPLVAARDSKCSAKDAEAGVLA--MEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDL 1699
+ ++ + K+ E A + LH + PF+LRR K +V LP K Y +
Sbjct: 396 ---FSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMKCDVELSLPRKKEIIMYATM 452
Query: 1700 SAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHP 1759
+ Q K E + + + E+A +G+G K + V Q L K C+HP
Sbjct: 453 TDHQKKFQEHLVNNTLEAHLG------ENAIRGQG--WKGKLNNLVIQ----LRKNCNHP 500
Query: 1760 LLVLG 1764
L+ G
Sbjct: 501 DLLQG 505
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 394 (143.8 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 117/357 (32%), Positives = 183/357 (51%)
Query: 1436 YKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRAS 1495
Y L ++ L +Q+EG+NWL L GIL DDMGLGKT+Q + S +A S
Sbjct: 367 YTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQ----ICSFLAGLFHS 422
Query: 1496 NSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVG-SAQDR-IALREQFDKHNV 1553
I+ +L++ P TL+ HW E+ + +S M T +Y G S + R L +
Sbjct: 423 KLIKR---ALVVAPKTLLPHWMKELAT-VGLSQM-TREYYGTSTKAREYDLHHILQGKGI 477
Query: 1554 IITSYDVVRK-------DADYLGQ-----LLWNYCILDEGHIIKNSKSKITVAVKQLKAA 1601
++T+YD+VR D Y + W+Y ILDEGH+IKN ++ ++ ++ ++
Sbjct: 478 LLTTYDIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLEIPSS 537
Query: 1602 HRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGV 1661
HR+I+SGTPIQNN+ +LW+LF+F PG LG + F+ Y ++ D + ++ G
Sbjct: 538 HRIIISGTPIQNNLKELWALFNFSCPGLLGDKNWFKQNYEHYILRGTDKNATDREQRIGS 597
Query: 1662 LAMEALHKQVMPFLLRRTKDEVLSD--LPEKIIQ-DR---YCDLSAVQLKLYEKFSGSQA 1715
+ L + + PF LRR K EV D K+ + D + L+A Q +LYE F S+
Sbjct: 598 TVAKNLREHIQPFFLRRLKSEVFGDDGATSKLSKKDEIVVWLRLTACQRQLYEAFLNSEI 657
Query: 1716 KQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLL 1772
+S+ +G+ ++A L L K+C HPLL L ++ E +L
Sbjct: 658 V--LSAF----------DGSPLAA---------LTILKKICDHPLL-LTKRAAEDVL 692
Score = 40 (19.1 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 1334 LGDMTSVHARQGAGMLISLLVQGLG 1358
+ M H R+G L SL QG G
Sbjct: 373 IATMLYPHQREGLNWLWSLHTQGKG 397
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 408 (148.7 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 108/338 (31%), Positives = 177/338 (52%)
Query: 1431 SHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIA 1490
S D K T L L+ YQ +G+ W+ L ++GIL D+MGLGKT+Q+ A++A +A
Sbjct: 1147 STADTLKQPTILNADLKPYQLKGMTWIVNLYDQGINGILADEMGLGKTIQSIAVLAH-LA 1205
Query: 1491 ERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDK 1550
E + +I P LI+ P + + +W E KF+ + Y G+ Q R +R+ ++
Sbjct: 1206 EEK---NIWG--PFLIVTPKSTLHNWKNEFAKFVPA--FKVIPYWGTQQQRTTIRKYWNP 1258
Query: 1551 ----H-----NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAA 1601
H +V+ITSY+V+ +D Y +L W Y +LDE H IK+S S +
Sbjct: 1259 KKLYHRNSPFHVLITSYNVIVRDEKYFHRLRWQYMVLDEAHAIKSSASNRWKTLMSFNCR 1318
Query: 1602 HRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGV 1661
+RL+L+GTPIQN++ +LW+L F+MP F + +F + K + S+ + +
Sbjct: 1319 NRLLLTGTPIQNSMAELWALLHFIMPTFFDSHDEFAEWFSKDIENHAMSQGGLNEHQ--- 1375
Query: 1662 LAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISS 1721
+ LH + PF+LRR K +V +++P K + YC+L+ Q KLY+ + + E+
Sbjct: 1376 --LNRLHMILKPFMLRRIKRDVENEMPSKTEVEVYCNLTHRQKKLYQSIRSNISITELLG 1433
Query: 1722 MVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHP 1759
E +G S KA + +Q+ K+C+HP
Sbjct: 1434 GASFSE-----QG---SMKALMNF--VMQFR-KVCNHP 1460
Score = 45 (20.9 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 964 LACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLR---AMETSSMFTEMLSANEID 1017
++ S+P PT L P +LS + +N + +L+ + + E+L+ +E D
Sbjct: 499 MSSSNPALPT---LAPLTQLSSSSSNQKNLPNLVLKKAISKKDREQLMELLNEHESD 552
Score = 45 (20.9 bits), Expect = 5.0e-30, Sum P(3) = 5.0e-30
Identities = 30/123 (24%), Positives = 48/123 (39%)
Query: 182 KDEDLIVHKLNSHGNGFDRRFYTSAS-AHNIQRL--VSSMVPSVISKRPSARELNMLKRK 238
KD + ++ LN H + D F T+ + + +I + S +PS+ S P N +
Sbjct: 537 KDREQLMELLNEHESDSDVDFSTTPTLSSHISKYSPAQSPLPSIKSIPPMPLSGNSFE-P 595
Query: 239 AKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGD-PFNSN---KADAVL-DEDSSEHEG 293
I ++ S D + N + FNSN K D +L E S E
Sbjct: 596 LSIGNQRNSTDNLYDNSNNKNNNNNYNNNNNMLKNLDFNSNDHSKLDNILLSEKSIERHR 655
Query: 294 DGL 296
+ L
Sbjct: 656 NPL 658
Score = 41 (19.5 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 861 NGDTSTNSVKITVGSDLEMSVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFS 919
NG S+NS + S+ + N + + S S QF + PL + TS S
Sbjct: 134 NGINSSNSNNSSNSSNKSKNSNNNIPNILPYISLNGSGSSSSSKQFSLPPLKSTTTSSS 192
Score = 38 (18.4 bits), Expect = 5.0e-30, Sum P(3) = 5.0e-30
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 485 NWLKLARHSWQKNCEFLQD 503
NW+K+ + K C+ D
Sbjct: 888 NWMKIIKKDLPKACKKYSD 906
Score = 37 (18.1 bits), Expect = 3.4e-29, Sum P(3) = 3.4e-29
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 205 SASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQS 247
S+S+ N + L + ++ ISK+ + + +L S D S
Sbjct: 516 SSSSSNQKNLPNLVLKKAISKKDREQLMELLNEHESDSDVDFS 558
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 326 (119.8 bits), Expect = 2.8e-30, Sum P(5) = 2.8e-30
Identities = 71/182 (39%), Positives = 106/182 (58%)
Query: 1540 DRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLK 1599
D++ + D H ++IT+Y +R +D L ++ W Y +LDEGH I+N S+I++ K+LK
Sbjct: 431 DKLIDKVVTDGH-ILITTYVGLRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLK 489
Query: 1600 AAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEA 1659
+R+ILSGTPIQNN+T+LWSLFDF+ PG LGT FQ + P+ + + +
Sbjct: 490 THNRIILSGTPIQNNLTELWSLFDFIFPGKLGTLPVFQQQFVIPINIGGYANATNIQVQT 549
Query: 1660 GVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEI 1719
G AL + P+LLRR K +V DLP+K +C L+ Q Y +F S +I
Sbjct: 550 GYKCAVALRDLISPYLLRRVKADVAKDLPQKKEMVLFCKLTKYQRSKYLEFLHSSDLNQI 609
Query: 1720 SS 1721
+
Sbjct: 610 QN 611
Score = 129 (50.5 bits), Expect = 2.8e-30, Sum P(5) = 2.8e-30
Identities = 38/124 (30%), Positives = 62/124 (50%)
Query: 1436 YKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRAS 1495
+K+ E+ L YQ+ + WL L + GI+ D+MGLGKT+Q A +A+
Sbjct: 287 FKIPGEIYSLLFNYQKTCVQWLYELYQQNCGGIIGDEMGLGKTIQVIAFIAA------LH 340
Query: 1496 NSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGS--AQDRIALREQFDKHNV 1553
+S P LI+CP+T++ W E + + L +GS A D+ ++ D N+
Sbjct: 341 HSGLLTGPVLIVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFKMDENDLENL 400
Query: 1554 IITS 1557
I+ S
Sbjct: 401 IMNS 404
Score = 44 (20.5 bits), Expect = 2.8e-30, Sum P(5) = 2.8e-30
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 125 NKVLEFGALLASGGQEYDIAIDNSKNPRERLARQKQNLKRRL 166
N V F L + Q+ + ++ SK +R +K +L R+L
Sbjct: 37 NDVTNFSNLQSL--QQEETRLERSKTALQRYVNKKNHLTRKL 76
Score = 38 (18.4 bits), Expect = 2.8e-30, Sum P(5) = 2.8e-30
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 1744 HVFQALQYLLKLCSHPLLV 1762
+V + L K+C+HP L+
Sbjct: 615 NVLFGIDILRKICNHPDLL 633
Score = 38 (18.4 bits), Expect = 2.8e-30, Sum P(5) = 2.8e-30
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 329 LTHHGASAGVFMPELGPDGALNVEFKDKDSITMKREREID 368
+T G AG + + A N E KD+D M E+ ++
Sbjct: 151 ITAFGHKAGFSLDTANREYAKNDEQKDED-FEMATEQMVE 189
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 376 (137.4 bits), Expect = 2.8e-30, P = 2.8e-30
Identities = 103/308 (33%), Positives = 162/308 (52%)
Query: 1397 LLPLARGVSPPTGLTEGLSRNAEDA-QFLEQLLDNSHIDDYKLGT----ELKVTLRRYQQ 1451
L LA+ + P + + + E Q E+ D+ ID G EL L +Q+
Sbjct: 43 LFNLAKDIFPTKKVMSRIQKLQEALEQLAEEEDDDEFIDVCSSGLLLYRELYEKLFEHQK 102
Query: 1452 EGINWLAFL-KRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS 1510
EGI +L L K + GIL DDMGLGKT+Q A + S + + N + L+I P+
Sbjct: 103 EGIAFLYSLYKDGRKGGILADDMGLGKTVQIIAFL-SGMFDASLVNHV------LLIMPT 155
Query: 1511 TLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKD----AD 1566
L+ W E K+ + T ++ +L ++ V+IT+Y ++ + A
Sbjct: 156 NLINTWVNEFAKWTPGMRVKTFHGSSKSERTRSLTRIQQRNGVVITTYQMLLNNWQQLAS 215
Query: 1567 YLGQ-LLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFL 1625
+ GQ +W+Y ILDE H IK++ +K V + + A++RL+L+GTP+QNN+ +LWSLFDF
Sbjct: 216 FNGQAFVWDYVILDEAHKIKSASTKSAVCARAIPASNRLLLTGTPVQNNLQELWSLFDFA 275
Query: 1626 MPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVL 1684
G LGT + F+ Y P++ AR+ + + G+ E L + + P+ LRRTK+EV
Sbjct: 276 CQGSLLGTLKTFKMEYEHPIIRAREKDATPGEKALGLKISENLMEIIKPYFLRRTKEEVQ 335
Query: 1685 S---DLPE 1689
+ D PE
Sbjct: 336 TKKADNPE 343
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 389 (142.0 bits), Expect = 3.4e-30, Sum P(3) = 3.4e-30
Identities = 96/270 (35%), Positives = 148/270 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
+R YQ EG+ WL L ++GIL D+MGLGKT+Q A +A I +R P L
Sbjct: 224 MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMI-QRGVPG------PFL 276
Query: 1506 IICPSTLVGHWAFEIEKFI-DVSLMSTLQYVGSAQDRIALREQFDK-------HNVIITS 1557
+ P + + +W E ++F D+ T+ Y G+ Q+R L + K H V+ITS
Sbjct: 277 VCGPLSTLPNWMAEFQRFTPDIP---TMLYHGTQQERRKLVKNIHKRKGTLQIHPVVITS 333
Query: 1558 YDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITD 1617
+++ +D + L W Y I+DEGH IKN K ++ +K+ A ++L+L+GTP+QNN+++
Sbjct: 334 FEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSE 393
Query: 1618 LWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLR 1677
LWSL +FL+P + F++ + ++ AK+ E VL M LH+ + PFLLR
Sbjct: 394 LWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM--LHQILTPFLLR 451
Query: 1678 RTKDEVLSDLPEKIIQDRYCDLSAVQLKLY 1707
R K +V ++P K Y LS Q Y
Sbjct: 452 RLKSDVALEVPPKREVVVYAPLSKKQEIFY 481
Score = 44 (20.5 bits), Expect = 3.4e-30, Sum P(3) = 3.4e-30
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 1713 SQAKQEISSMV-KVDESADKGEGN-NVSAKASTHVFQALQYLLKLCSHPLLV 1762
++ ++ IS M +VD E N V ++ + + + L K C+HP L+
Sbjct: 527 NELEKLISQMQPEVDRERAVVETNIPVESEVNLKLQNIMMLLRKCCNHPYLI 578
Score = 40 (19.1 bits), Expect = 3.4e-30, Sum P(3) = 3.4e-30
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 149 KNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKD 183
KN +E QK++ L ++ ++ D N +IKD
Sbjct: 154 KNKKEN--EQKESSSSNLCVEDLQKNKDSNSIIKD 186
Score = 37 (18.1 bits), Expect = 6.9e-30, Sum P(3) = 6.9e-30
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 746 SSGGSFWPSFILGDTLRIVFQNLLLESNEEI 776
SSGGS P + ++ Q +LE E++
Sbjct: 8 SSGGSLAPDTVEPPEPAVITQ-AMLEEEEQL 37
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 397 (144.8 bits), Expect = 3.5e-30, Sum P(2) = 3.5e-30
Identities = 100/284 (35%), Positives = 152/284 (53%)
Query: 1437 KLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASN 1496
KL LK +LR YQ G++WL + KL+GIL D+MGLGKT+ A++A ++
Sbjct: 527 KLPFLLKHSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWG 586
Query: 1497 SIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---V 1553
P LI+ P++++ +W E K+ L Y GSA++R R+ + K N V
Sbjct: 587 ------PHLIVVPTSVMLNWETEFLKWCPA--FKILTYFGSAKERKLKRQGWMKLNSFHV 638
Query: 1554 IITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQN 1613
IT+Y +V +D+ + W Y ILDE H+IKN KS+ + + R++L+GTP+QN
Sbjct: 639 CITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQN 698
Query: 1614 NITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMP 1673
++ +LWSL FLMP + ++F+ + P+ + + + E ++ LH + P
Sbjct: 699 DLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQ-EKINKEV----IDRLHNVLRP 753
Query: 1674 FLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQ 1717
FLLRR K +V LP K +C LS Q LYE F S Q
Sbjct: 754 FLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIASTETQ 797
Score = 41 (19.5 bits), Expect = 3.5e-30, Sum P(2) = 3.5e-30
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 1705 KLYEKFSGSQAKQEISSMVKVDESADKG--EGNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
K +K S + + + S+VK+++S D E VS+ S V + +K L+V
Sbjct: 1517 KSLKKGSLAAESKHVKSVVKIEDSTDDDNEEFGYVSSSDSDMVTPLSRMHMKGKKRDLIV 1576
Query: 1763 LGDKSPES 1770
D+ S
Sbjct: 1577 DTDEEKTS 1584
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 371 (135.7 bits), Expect = 3.6e-30, P = 3.6e-30
Identities = 92/267 (34%), Positives = 146/267 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ A++ R P +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPG------PHM 239
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ SL + +VG R A +R++ + +V +TSY++V
Sbjct: 240 VLVPKSTLHNWMNEFKRWVP-SLR-VICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 297
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K+ +RL+L+GTP+QNN+ +LW+L
Sbjct: 298 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 357
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+K D + +E LH + PFLLRR K +
Sbjct: 358 NFLLPDVFNSADDFDSWF--------DTKNCLGDQKL----VERLHAVLKPFLLRRIKTD 405
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y K
Sbjct: 406 VEKSLPPKKEIKIYLGLSKMQREWYTK 432
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 313 (115.2 bits), Expect = 3.6e-30, Sum P(2) = 3.6e-30
Identities = 64/180 (35%), Positives = 96/180 (53%)
Query: 1540 DRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLK 1599
D + R + ++IT+Y+ +R + L + W Y +LDEGH I+N S IT+ KQL+
Sbjct: 506 DSLLNRVLNSESGLLITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQ 565
Query: 1600 AAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEA 1659
HR+I++G PIQN +T+LWSLFDF+ PG LG F+A + P+ + S
Sbjct: 566 TVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVST 625
Query: 1660 GVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEI 1719
L +MP+LLRR K +V + L +K +C L+ Q Y F S ++I
Sbjct: 626 AYRCAVVLRDLIMPYLLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTYRAFLASSEVEQI 685
Score = 120 (47.3 bits), Expect = 3.6e-30, Sum P(2) = 3.6e-30
Identities = 35/92 (38%), Positives = 48/92 (52%)
Query: 1449 YQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIIC 1508
YQ+ G+ WL L + GI+ D+MGLGKT+Q V S + S + PS+IIC
Sbjct: 388 YQRVGVQWLWELHCQRAGGIIGDEMGLGKTIQ----VLSFLGSLHFSKMYK---PSIIIC 440
Query: 1509 PSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQD 1540
P TL+ W E +K+ + L SAQD
Sbjct: 441 PVTLLRQWRREAQKWYPDFHVEILH--DSAQD 470
Score = 39 (18.8 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 228 SARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQN 263
SA++ K + K S D S D D E P ++N
Sbjct: 467 SAQDSGHGKGQGKASESDYDSESSVDSDHE-PKSKN 501
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 370 (135.3 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 111/366 (30%), Positives = 192/366 (52%)
Query: 1446 LRRYQQEGINWL-AFLKRFKLHG----ILCDDMGLGKTLQASAIVASDIAERRASNSIEE 1500
LR +Q+EGI +L + ++ G IL D+MGLGKTLQ ++V + + +
Sbjct: 303 LRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKTLQCISLVWT-LLRQGVYGCKPV 361
Query: 1501 IHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDK---HNVIITS 1557
+ +LI+ P +LV +W E +K++ + QD E+F ++V+I S
Sbjct: 362 LKRALIVTPGSLVKNWKKEFQKWLGSERIKVFTV---DQDHKV--EEFISSPLYSVMIIS 416
Query: 1558 YDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITD 1617
Y+++ + D + + +N I DEGH +KNS K T A+ L R+IL+GTPIQN++ +
Sbjct: 417 YEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDLQE 476
Query: 1618 LWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLR 1677
++L +F+ PG LG+ ++ Y +P+V +R+ + ++ + G L + F+LR
Sbjct: 477 FYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAELTRLTGLFILR 536
Query: 1678 RTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNV 1737
RT++ + LP K +C +A+QL+LY+K S+ ISS ++ G N
Sbjct: 537 RTQEVINKFLPPKKENIIFCQPTALQLELYQKLLSSRV---ISSCLQ-------GRLEN- 585
Query: 1738 SAKASTHVFQALQYLLKLCSHPLLV---LGDK--SPESLLCHLSELFPGSSDIISELHKA 1792
S H+ + L KLC+HP L+ L +K P+S S L+ G +D+ + + +
Sbjct: 586 ----SPHLI-CIGALKKLCNHPCLLFKALKEKCCDPKSDEHVESSLYEGLTDVFPQDYTS 640
Query: 1793 SSLSQI 1798
+ S+I
Sbjct: 641 DTFSEI 646
Score = 57 (25.1 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 661 EIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQA 700
E+ S EE M+G +E ++ V+ ADD GR FQA
Sbjct: 179 ELDSLEEGQTLMIGG---KEIEVMGVISADDFSSGRCFQA 215
Score = 37 (18.1 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 1256 SVRDPQILINNIQLVRSIAPMLDEALKPKLLT 1287
S Q+L N + R I P AL PK+ T
Sbjct: 4 SAAPSQVLGNVAKKPRFIPPGKSNALCPKIET 35
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 371 (135.7 bits), Expect = 4.6e-30, P = 4.6e-30
Identities = 97/292 (33%), Positives = 156/292 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L+ YQ EG+NWL L L+GIL D+MGLGKT+Q+ A++A I E P L
Sbjct: 222 LKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAF-IYEMDTKG------PFL 274
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSA--QDRIA-LREQFDKHN---VIITSYD 1559
+ P + + +W E KF + L+Y G+ ++R A L+ F +H ++ITSY+
Sbjct: 275 VTAPLSTLDNWMNEFAKFAPD--LPVLKYYGTNGYKERSAKLKNFFKQHGGTGIVITSYE 332
Query: 1560 VVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLW 1619
++ +D D + W + I+DEGH +KN ++ +K++ ++RL+L+GTP+QNN+ +LW
Sbjct: 333 IILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNLAELW 392
Query: 1620 SLFDFLMPGFLGTERQFQATY---GKPLVAARDSKCSAK--DAEAGVLAMEALHKQVMPF 1674
SL +F+MP F + L + +S+ K + E + LH + PF
Sbjct: 393 SLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQKNLISNLHTILKPF 452
Query: 1675 LLRRTKDEVLSD-LPEKIIQDRYCDLSAVQLKLYEK-FSGSQAKQEISSMVK 1724
LLRR K VL++ LP K C +++ Q K Y+ +G K ++K
Sbjct: 453 LLRRLKKVVLANILPPKREYIINCPMTSAQEKFYKAGLNGKLKKTMFKELIK 504
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 375 (137.1 bits), Expect = 6.1e-30, Sum P(3) = 6.1e-30
Identities = 100/295 (33%), Positives = 163/295 (55%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
++L+ YQ+ G+NWLA + + L+GIL D+MGLGKT+QA A +A E P
Sbjct: 495 LSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNKG-------P 547
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR----EQFDKHNVIITSYD 1559
LI+ P++ + +W E+ + + L Y GS ++R +R +++++NVI+T+Y+
Sbjct: 548 HLIVVPASTIDNWLREVNLWCPT--LKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
Query: 1560 VVRKDAD---YLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNIT 1616
+D +L NY I DEGH++KN S + + A +RL+L+GTP+QNN+
Sbjct: 606 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
Query: 1617 DLWSLFDFLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL-H-KQVM- 1672
+L SL +F+MP F + + + + SK + D E + E + H KQ++
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMFS--------SKTKSAD-EQSIYEKERIAHAKQIIK 716
Query: 1673 PFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
PF+LRR K+EVL LP K Q C +S Q +LY ++ K+ I+++ K E
Sbjct: 717 PFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLF-NRLKKSINNIEKSTE 770
Score = 56 (24.8 bits), Expect = 6.1e-30, Sum P(3) = 6.1e-30
Identities = 25/89 (28%), Positives = 36/89 (40%)
Query: 206 ASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVT 265
A ++Q S P+ K S+R N K AK K + ++G +NV
Sbjct: 293 AEDQDMQYASQSEFPN--GKEASSRSQNYPKNAAKTKLKQKCSMKPQNG-FNKKRKKNVF 349
Query: 266 TPKGSCGDPFNSNKAD--AVLDEDSSEHE 292
PK D + +D + LDED S E
Sbjct: 350 NPKRVIEDSEYDSGSDVGSSLDEDYSSGE 378
Score = 46 (21.3 bits), Expect = 6.1e-30, Sum P(3) = 6.1e-30
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 1735 NNVSAKASTHVFQALQYLLKLCSHPLL 1761
NN+ + ST + + L K+ +HPLL
Sbjct: 763 NNI--EKSTEMCNVMMQLRKMANHPLL 787
Score = 42 (19.8 bits), Expect = 1.1e-27, Sum P(4) = 1.1e-27
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 1409 GLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGT 1440
GL RN +D LE L + + D KL T
Sbjct: 132 GLPTMSGRNNDDISELEDLSELEDLKDAKLQT 163
Score = 38 (18.4 bits), Expect = 1.1e-27, Sum P(4) = 1.1e-27
Identities = 25/107 (23%), Positives = 43/107 (40%)
Query: 388 EDAPPPLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEPES------- 440
E AP P SP++ + +V +G P + + + SSV E+
Sbjct: 22 EAAPQPSQPGPSSPISLSAEEENAEVSRAGT--PDSDITEKTEDSSVPETTENERKASIS 79
Query: 441 ---NLDGLSHP--SKEAIDILEPRGQSGEKGDFLNSETLKNLPENSE 482
N G+ + S ++ DI+ P S + N +T+ + E SE
Sbjct: 80 YFKNQRGIQYIDLSSDSEDIVSPNCSSTVQEKKFNKDTVIIVSEPSE 126
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 371 (135.7 bits), Expect = 6.6e-30, P = 6.6e-30
Identities = 92/267 (34%), Positives = 146/267 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ A++ R P +
Sbjct: 162 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPG------PHM 215
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ SL + +VG R A +R++ + +V +TSY++V
Sbjct: 216 VLVPKSTLHNWMNEFKRWVP-SLR-VICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 273
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K+ +RL+L+GTP+QNN+ +LW+L
Sbjct: 274 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 333
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+K D + +E LH + PFLLRR K +
Sbjct: 334 NFLLPDVFNSADDFDSWF--------DTKNCLGDQKL----VERLHAVLKPFLLRRIKTD 381
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y K
Sbjct: 382 VEKSLPPKKEIKIYLGLSKMQREWYTK 408
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 368 (134.6 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 111/366 (30%), Positives = 191/366 (52%)
Query: 1446 LRRYQQEGINWL-AFLKRFKLHG----ILCDDMGLGKTLQASAIVASDIAERRASNSIEE 1500
LR +Q+EGI +L + ++ G IL D+MGLGKTLQ ++V + + +
Sbjct: 303 LRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKTLQCISLVWT-LLRQGVYGCKPV 361
Query: 1501 IHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDK---HNVIITS 1557
+ +LI+ P +LV +W E +K++ + QD E+F ++V+I S
Sbjct: 362 LKRALIVTPGSLVKNWKKEFQKWLGSERIKVFTV---DQDHKV--EEFISSPLYSVMIIS 416
Query: 1558 YDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITD 1617
Y+++ + D + + +N I DEGH +KNS K T A+ L R+IL+GTPIQN++ +
Sbjct: 417 YEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDLQE 476
Query: 1618 LWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLR 1677
++L +F+ PG LG+ ++ Y +P+V +R+ + ++ + G L + F+LR
Sbjct: 477 FYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAELTRLTGLFILR 536
Query: 1678 RTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNV 1737
RT++ + LP K +C +A+QL+LY K S+ ISS ++ G N
Sbjct: 537 RTQEVINKFLPPKKENIIFCQPTALQLELYRKLLSSRV---ISSCLQ-------GRLEN- 585
Query: 1738 SAKASTHVFQALQYLLKLCSHPLLV---LGDK--SPESLLCHLSELFPGSSDIISELHKA 1792
S H+ + L KLC+HP L+ L +K P+S S L+ G +D+ + + +
Sbjct: 586 ----SPHLI-CIGALKKLCNHPCLLFKALKEKCCDPKSDEHVESSLYEGLTDVFPQDYTS 640
Query: 1793 SSLSQI 1798
+ S+I
Sbjct: 641 DTFSEI 646
Score = 57 (25.1 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 661 EIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQA 700
E+ S EE M+G +E ++ V+ ADD GR FQA
Sbjct: 179 ELDSLEEGQTLMIGG---KEIEVMGVISADDFSSGRCFQA 215
Score = 39 (18.8 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 1004 SSMFTEMLSANEID-----------VESLSADNAISFASKLQLLGSNSDGSESL 1046
+S+F+EM S N+ + V+S A N+ S SKL++ ++ ++++
Sbjct: 54 ASLFSEMFSENQSENFTQSVESSGKVKSTKAWNSTSKCSKLEMKTQSAPKADAM 107
Score = 37 (18.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 1256 SVRDPQILINNIQLVRSIAPMLDEALKPKLLT 1287
S Q+L N + R I P AL PK+ T
Sbjct: 4 SAAPSQVLGNVAKKPRFIPPGKSNALCPKIET 35
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 371 (135.7 bits), Expect = 7.2e-30, P = 7.2e-30
Identities = 92/267 (34%), Positives = 146/267 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ A++ R P +
Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPG------PHM 236
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ SL + +VG R A +R++ + +V +TSY++V
Sbjct: 237 VLVPKSTLHNWMNEFKRWVP-SLR-VICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 294
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K+ +RL+L+GTP+QNN+ +LW+L
Sbjct: 295 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 354
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+K D + +E LH + PFLLRR K +
Sbjct: 355 NFLLPDVFNSADDFDSWF--------DTKNCLGDQKL----VERLHAVLKPFLLRRIKTD 402
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y K
Sbjct: 403 VEKSLPPKKEIKIYLGLSKMQREWYTK 429
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 371 (135.7 bits), Expect = 7.2e-30, P = 7.2e-30
Identities = 92/267 (34%), Positives = 146/267 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ A++ R P +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPG------PHM 239
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ SL + +VG R A +R++ + +V +TSY++V
Sbjct: 240 VLVPKSTLHNWMNEFKRWVP-SLR-VICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 297
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K+ +RL+L+GTP+QNN+ +LW+L
Sbjct: 298 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 357
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+K D + +E LH + PFLLRR K +
Sbjct: 358 NFLLPDVFNSADDFDSWF--------DTKNCLGDQKL----VERLHAVLKPFLLRRIKTD 405
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y K
Sbjct: 406 VEKSLPPKKEIKIYLGLSKMQREWYTK 432
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 371 (135.7 bits), Expect = 7.3e-30, P = 7.3e-30
Identities = 92/267 (34%), Positives = 146/267 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ A++ R P +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPG------PHM 239
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ SL + +VG R A +R++ + +V +TSY++V
Sbjct: 240 VLVPKSTLHNWMNEFKRWVP-SLR-VICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 297
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K+ +RL+L+GTP+QNN+ +LW+L
Sbjct: 298 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 357
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+K D + +E LH + PFLLRR K +
Sbjct: 358 NFLLPDVFNSADDFDSWF--------DTKNCLGDQKL----VERLHAVLKPFLLRRIKTD 405
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y K
Sbjct: 406 VEKSLPPKKEIKIYLGLSKMQREWYTK 432
>UNIPROTKB|A6QQR4 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9913 "Bos taurus" [GO:0000777 "condensed chromosome
kinetochore" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0051301
GO:GO:0007067 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000777 EMBL:BC149963 EMBL:BT026201 IPI:IPI00694211
RefSeq:NP_001096000.1 UniGene:Bt.74729 ProteinModelPortal:A6QQR4
STRING:A6QQR4 PRIDE:A6QQR4 Ensembl:ENSBTAT00000007362 GeneID:782916
KEGG:bta:782916 CTD:54821 GeneTree:ENSGT00590000083118
HOGENOM:HOG000074172 HOVERGEN:HBG107854 InParanoid:A6QQR4
OMA:TKNGDLE OrthoDB:EOG4FR0RD NextBio:20925771 ArrayExpress:A6QQR4
Uniprot:A6QQR4
Length = 1242
Score = 383 (139.9 bits), Expect = 7.3e-30, Sum P(2) = 7.3e-30
Identities = 111/323 (34%), Positives = 167/323 (51%)
Query: 1397 LLPLARGVSPPTGLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGT----ELKVTLRRYQQE 1452
L LA+ + P + + + E + L + D+ ID G EL L YQ+E
Sbjct: 43 LFNLAKDIFPNEKVMSRIQKIQEALEELAEHGDDEFIDVCNSGLLLYQELHNQLYEYQKE 102
Query: 1453 GINWLAFLKRF-KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST 1511
GI +L L R + GIL DDMGLGKT+Q A + S + + N + L+I P++
Sbjct: 103 GIAFLYSLYRDGRRGGILADDMGLGKTVQIIAFL-SGMFDASLVNHV------LLIMPTS 155
Query: 1512 LVGHWAFEIEKFIDVSLMSTLQYVGSAQD---RIALREQFDKHNVIITSYDVVRKDADYL 1568
L+ W E K+ + T G ++D R R Q ++ VIIT+Y ++ + L
Sbjct: 156 LISTWLREFVKWTPGMRVKTFH--GPSKDERTRNLCRIQ-QRNGVIITTYQMLINNWQQL 212
Query: 1569 GQL-----LWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFD 1623
L LW+Y ILDE H IK+S +K + + + A++R++L+GTPIQNN+ +LWSLFD
Sbjct: 213 SSLNGQEFLWDYVILDEAHKIKSSSTKSAICARAIPASNRILLTGTPIQNNLQELWSLFD 272
Query: 1624 FLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
F G LGT R F+ Y P+ AR+ + + G E L + P+ LRRTK+E
Sbjct: 273 FACQGSLLGTLRTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEE 332
Query: 1683 VL---SDLPEKIIQDRYCDLSAV 1702
V S PE + ++ D+ A+
Sbjct: 333 VQKKKSSNPEVQLSEKSPDVGAI 355
Score = 46 (21.3 bits), Expect = 7.3e-30, Sum P(2) = 7.3e-30
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 1698 DLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHV 1745
D A + KL E+ S + + +++SAD G+ N+S++ HV
Sbjct: 924 DAQANEAKLEEEPLASSGQYACDFNLFLEDSADNGQ--NLSSQFLEHV 969
Score = 41 (19.5 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 1754 KLCSHPLLVLGDKSPE-SLLCHLSELFPGSSDII 1786
K S+P + L +KSP+ +C + L +D+I
Sbjct: 336 KKSSNPEVQLSEKSPDVGAICEMPSL-SRKNDLI 368
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 371 (135.7 bits), Expect = 7.4e-30, P = 7.4e-30
Identities = 92/267 (34%), Positives = 146/267 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ A++ R P +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPG------PHM 239
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ SL + +VG R A +R++ + +V +TSY++V
Sbjct: 240 VLVPKSTLHNWMNEFKRWVP-SLR-VICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 297
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K+ +RL+L+GTP+QNN+ +LW+L
Sbjct: 298 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 357
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+K D + +E LH + PFLLRR K +
Sbjct: 358 NFLLPDVFNSADDFDSWF--------DTKNCLGDQKL----VERLHAVLKPFLLRRIKTD 405
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y K
Sbjct: 406 VEKSLPPKKEIKIYLGLSKMQREWYTK 432
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 371 (135.7 bits), Expect = 7.4e-30, P = 7.4e-30
Identities = 92/267 (34%), Positives = 146/267 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ A++ R P +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPG------PHM 239
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ SL + +VG R A +R++ + +V +TSY++V
Sbjct: 240 VLVPKSTLHNWMNEFKRWVP-SLR-VICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 297
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K+ +RL+L+GTP+QNN+ +LW+L
Sbjct: 298 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 357
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+K D + +E LH + PFLLRR K +
Sbjct: 358 NFLLPDVFNSADDFDSWF--------DTKNCLGDQKL----VERLHAVLKPFLLRRIKTD 405
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y K
Sbjct: 406 VEKSLPPKKEIKIYLGLSKMQREWYTK 432
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 371 (135.7 bits), Expect = 7.5e-30, P = 7.5e-30
Identities = 92/267 (34%), Positives = 145/267 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ A++ R P +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPG------PHM 239
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ SL + +VG R A +R++ + +V +TSY++V
Sbjct: 240 VLVPKSTLHNWMNEFKRWVP-SLR-VICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 297
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V+ K+ +RL+L+GTP+QNN+ +LW+L
Sbjct: 298 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWALL 357
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+K D + +E LH + PFLLRR K +
Sbjct: 358 NFLLPDVFNSAEDFDSWF--------DTKNCLGDQKL----VERLHTVLKPFLLRRIKTD 405
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y K
Sbjct: 406 VEKSLPPKKEIKIYLGLSKMQREWYTK 432
>TIGR_CMR|BA_1804 [details] [associations]
symbol:BA_1804 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 Pfam:PF04434 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000026038 OMA:NTLNAEM InterPro:IPR013663
Pfam:PF08455 RefSeq:NP_844228.1 RefSeq:YP_018441.1
RefSeq:YP_027937.1 ProteinModelPortal:Q81S67 IntAct:Q81S67
DNASU:1086172 EnsemblBacteria:EBBACT00000012419
EnsemblBacteria:EBBACT00000014433 EnsemblBacteria:EBBACT00000022268
GeneID:1086172 GeneID:2814636 GeneID:2849386 KEGG:ban:BA_1804
KEGG:bar:GBAA_1804 KEGG:bat:BAS1671 ProtClustDB:CLSK916372
BioCyc:BANT260799:GJAJ-1742-MONOMER
BioCyc:BANT261594:GJ7F-1813-MONOMER Uniprot:Q81S67
Length = 1064
Score = 321 (118.1 bits), Expect = 7.9e-30, Sum P(3) = 7.9e-30
Identities = 87/266 (32%), Positives = 145/266 (54%)
Query: 1377 SDCDQSVRQS-VTRSFASLVPL-LPLARGVSPPTGLTEG--LSRNAEDAQFLEQLLDNSH 1432
++ +Q V++S + + F + +PL R V GL EG LS + E Q L + + N
Sbjct: 541 NEINQFVKESGIRKEFLHGEEVNVPLIRSVKWMNGLHEGNVLSLD-ESVQDLVESIQNPK 599
Query: 1433 IDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAER 1492
+ + L+ +R YQ G W+ L ++ GIL DDMGLGKTLQ+ A + S + E
Sbjct: 600 KLKFTVPQTLRAVMREYQVYGFEWMKTLAYYRFGGILADDMGLGKTLQSIAYIDSVLPEI 659
Query: 1493 RASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE--QFDK 1550
R E+ P L++ PS+LV +W E++KF + + + A+ R L++ +FD
Sbjct: 660 R-----EKKLPILVVSPSSLVYNWLSELKKFAP-HIRAVIADGNQAERRKILKDVAEFD- 712
Query: 1551 HNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTP 1610
V+ITSY ++R+D + ++ LDE KN ++ AVK ++A +R L+GTP
Sbjct: 713 --VVITSYPLLRRDIRSYARP-FHTLFLDEAQAFKNPTTQTARAVKTIQAEYRFGLTGTP 769
Query: 1611 IQNNITDLWSLFDFLMPGFLGTERQF 1636
++N++ +LWS+F + P L ++F
Sbjct: 770 VENSLEELWSIFHVVFPELLPGRKEF 795
Score = 112 (44.5 bits), Expect = 7.9e-30, Sum P(3) = 7.9e-30
Identities = 33/108 (30%), Positives = 51/108 (47%)
Query: 1658 EAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQ 1717
E G L E + K+V PF+LRR K++VL +LP+KI + +L Q +LY +
Sbjct: 794 EFGDLRREDIAKRVKPFVLRRLKEDVLKELPDKIEHLQSSELLPDQKRLYAAY------- 846
Query: 1718 EISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGD 1765
+ K+ E K + K + L L ++C HP L + D
Sbjct: 847 ----LAKLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDD 890
Score = 46 (21.3 bits), Expect = 7.9e-30, Sum P(3) = 7.9e-30
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 409 ISIKVDDSGCNLPAGSVNGQLDLSSVKVEPESNLDG--LSHPSKEAIDILEPRGQSGEKG 466
+S + D G +P + G L K + +G LS SKE +I + +SG +
Sbjct: 497 LSFRFDIKG--IPEAEIKGVLVALEEKRKYYRLANGSLLSLESKEFNEINQFVKESGIRK 554
Query: 467 DFLNSETLKNLP 478
+FL+ E + N+P
Sbjct: 555 EFLHGEEV-NVP 565
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 370 (135.3 bits), Expect = 9.1e-30, P = 9.1e-30
Identities = 92/267 (34%), Positives = 146/267 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ A++ R P +
Sbjct: 187 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPG------PHM 240
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ SL + +VG R A +R++ + +V +TSY++V
Sbjct: 241 VLVPKSTLHNWMNEFKRWVP-SLR-VICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVI 298
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K+ +RL+L+GTP+QNN+ +LW+L
Sbjct: 299 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 358
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+K D + +E LH + PFLLRR K +
Sbjct: 359 NFLLPDVFNSADDFDSWF--------DTKNCLGDQKL----VERLHAVLKPFLLRRIKTD 406
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y K
Sbjct: 407 VEKSLPPKKEIKIYLGLSKMQREWYTK 433
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 383 (139.9 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 94/269 (34%), Positives = 148/269 (55%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
+R YQ EG+ WL L ++GIL D+MGLGKT+Q A +A I +R P L
Sbjct: 201 MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMI-QRGVPG------PFL 253
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDR-IALREQFDK------HNVIITSY 1558
+ P + + +W E ++F + T+ Y G+ Q+R I ++ ++ H V+ITS+
Sbjct: 254 VCGPLSTLPNWMAEFKRFTPE--IPTMLYHGTQQERRILVKHIHERKGTLQIHPVVITSF 311
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
++ +D L W Y I+DEGH IKN K ++ +K+ A ++L+L+GTP+QNN+++L
Sbjct: 312 EIAMRDRTTLQNCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSEL 371
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL +FL+P + F++ + ++ AK+ E VL M LH+ + PFLLRR
Sbjct: 372 WSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM--LHQILTPFLLRR 429
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLY 1707
K +V ++P K Y LS Q Y
Sbjct: 430 LKSDVALEVPPKREVVVYAPLSKKQEIFY 458
Score = 46 (21.3 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 421 PAGSVNGQLDLSSVKVEPESNLDGLSHPS--KEAIDI 455
PA S + L + ++E + NL G + S +E++DI
Sbjct: 6 PANSGEKRTRLKAAEIENKRNLKGKARMSWDRESVDI 42
Score = 39 (18.8 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 1737 VSAKASTHVFQALQYLLKLCSHPLLV 1762
+ ++ + + + L K C+HP L+
Sbjct: 530 IESEVNLKLQNIMMLLRKCCNHPYLI 555
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 368 (134.6 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 94/270 (34%), Positives = 151/270 (55%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHG--ILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
+ LR YQ EG+NWLA +RF IL D+MGLGKT Q A+ +A R + +
Sbjct: 44 IHLRSYQLEGVNWLA--QRFHCQNGCILGDEMGLGKTCQTIALFIY-LAGR-----LNDE 95
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE---QFDKHNVIITSY 1558
P LI+CP +++ +W E+++F +S + Y G ++R L++ Q + +V++T+Y
Sbjct: 96 GPFLILCPLSVLSNWKEEMQRFAPG--LSCVTYAGDKEERACLQQDLKQESRFHVLLTTY 153
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
++ KDA +L W+ ++DE H +KN S + + + L+L+GTPIQN++ +L
Sbjct: 154 EICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQEL 213
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
+SL F+ P E G + +D + K++E+ A E LHK + PFLLRR
Sbjct: 214 YSLLSFVEPDLFSKEE-----VGDFIQRYQDIE---KESES---ASE-LHKLLQPFLLRR 261
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
K EV ++LP+K Y +SA+Q K Y+
Sbjct: 262 VKAEVATELPKKTEVVIYHGMSALQKKYYK 291
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 369 (135.0 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 92/267 (34%), Positives = 146/267 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ A++ R P +
Sbjct: 163 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNFPG------PHM 216
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ SL + +VG R A +R++ + +V +TSY++V
Sbjct: 217 VLVPKSTLHNWMNEFKRWVP-SLR-VICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVI 274
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K+ +RL+L+GTP+QNN+ +LW+L
Sbjct: 275 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 334
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+K D + +E LH + PFLLRR K +
Sbjct: 335 NFLLPDVFNSADDFDSWF--------DTKNCLGDQKL----VERLHAVLKPFLLRRIKTD 382
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y K
Sbjct: 383 VEKSLPPKKEIKIYLGLSKMQREWYTK 409
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 381 (139.2 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 94/267 (35%), Positives = 150/267 (56%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
+R YQ G+NWLA L+ K++GIL D+MGLGKTLQ +++ + N P L
Sbjct: 132 MRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGY---MKHYKNKAS---PHL 185
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRK 1563
+I P + + +WA E +K+ S+ + + A LR+ K +V T+Y+++ K
Sbjct: 186 VIVPKSTLQNWANEFKKWCP-SINAVVLIGDEAARNQVLRDVILPQKFDVCCTTYEMMLK 244
Query: 1564 DADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFD 1623
L +L W Y I+DE H IKN KSK++ V++L + +RL+++GTP+QNN+ +LW+L +
Sbjct: 245 VKTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLN 304
Query: 1624 FLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEV 1683
FL+P + F + + + D+ D ++ LHK + PFLLRR K +V
Sbjct: 305 FLLPDIFTSSDDFDSWF------SNDAMSGNTDL------VQRLHKVLQPFLLRRIKSDV 352
Query: 1684 -LSDLPEKIIQDRYCDLSAVQLKLYEK 1709
S LP+K ++ Y LS +Q + Y K
Sbjct: 353 EKSLLPKKEVKV-YVGLSKMQREWYTK 378
Score = 43 (20.2 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 1001 METSSMFTEMLSAN----EIDVESLSADNAISFASKLQLLGSNSDGSESLS 1047
M+T S E S N E+D E S+D A SF +LL + S LS
Sbjct: 15 MDTDSNIPES-SGNDPSMEVDDEPESSDAADSFKRFERLLQKTENFSHCLS 64
Score = 40 (19.1 bits), Expect = 2.4e-29, Sum P(2) = 2.4e-29
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 1012 SANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCV 1071
S+NEI+ E + D+ I +S D ES D + ++ + T + C+
Sbjct: 6 SSNEINDEPMDTDSNIPESSGNDPSMEVDDEPES--SDAADSFKRFERLLQKTENFSHCL 63
Query: 1072 QS 1073
S
Sbjct: 64 SS 65
Score = 37 (18.1 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
E+R + G+ +L +++ ++G+L
Sbjct: 131 EMRDYQVRGLNWLASLQHNKINGIL 155
>MGI|MGI:2444036 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
Pfam:PF00176 MGI:MGI:2444036 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AC136146 EMBL:AC122417 IPI:IPI00988884
ProteinModelPortal:E9Q9V7 SMR:E9Q9V7 Ensembl:ENSMUST00000066582
OMA:VIQDHQA Bgee:E9Q9V7 Uniprot:E9Q9V7
Length = 936
Score = 395 (144.1 bits), Expect = 1.2e-29, Sum P(6) = 1.2e-29
Identities = 98/280 (35%), Positives = 153/280 (54%)
Query: 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
L+ LR YQ G++WL + KL+GIL D+MGLGKT+Q +++A E+ N
Sbjct: 606 LRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEK--GNW---- 659
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSY 1558
P LII P++++ +W E++++ L Y G+ ++R R+ + K N V ITSY
Sbjct: 660 GPHLIIVPTSVMLNWEMELKRWCPS--FKILTYYGAQKERKLKRQGWTKPNAFHVCITSY 717
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
+V +D + W Y ILDE IKN KS+ ++ + RL+L+GTP+QN++ +L
Sbjct: 718 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMEL 777
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL FLMP + R+F+ + PL + +++ G++ + LHK + PFLLRR
Sbjct: 778 WSLMHFLMPHVFQSHREFKEWFSNPLTGMIEG---SQEYNEGLV--KRLHKVLRPFLLRR 832
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQE 1718
K +V +P+K C LS Q LY+ F +E
Sbjct: 833 VKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKE 872
Score = 45 (20.9 bits), Expect = 1.2e-29, Sum P(6) = 1.2e-29
Identities = 21/82 (25%), Positives = 30/82 (36%)
Query: 447 HPSKEAIDILEPRGQSGEKGDFLNSETLKNLPENSELMNWLKLARHSWQKNCEFLQDCAI 506
HP ++ + + E+ E L+ E M +LAR E LQ A
Sbjct: 375 HPDEDDEEFTANEDEEDEEDTIAAEEQLEG--EVDHAMELSELAREGELSMEELLQQYAG 432
Query: 507 RFLCILSLDRFGDYVS-DQVVA 527
+ C S GD D+V A
Sbjct: 433 AYACDASAPASGDSEDEDEVEA 454
Score = 43 (20.2 bits), Expect = 1.2e-29, Sum P(6) = 1.2e-29
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 351 VEFKDKDSITMKREREIDLNVQVPADEPE 379
V+FK + + KR++ +DL++ + E
Sbjct: 194 VQFKQQSRLEEKRKKALDLHLDFIVGQTE 222
Score = 40 (19.1 bits), Expect = 1.2e-29, Sum P(6) = 1.2e-29
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 1745 VFQALQYLLKLCSHPLL 1761
V L L K+C+HP L
Sbjct: 882 VINILMQLRKVCNHPNL 898
Score = 39 (18.8 bits), Expect = 3.5e-29, Sum P(4) = 3.5e-29
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 140 EYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDED 185
E D A++ S+ RE ++ L++ G C+ + +DED
Sbjct: 405 EVDHAMELSELAREGELSMEELLQQYAGAYACDASAPASGDSEDED 450
Score = 37 (18.1 bits), Expect = 1.2e-29, Sum P(6) = 1.2e-29
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 1164 GSMEIIDDQDFLSFGSSTGKQKSRAHMLAGGEDRSRVEG 1202
G + +DD D FG ++LA ++RS V+G
Sbjct: 527 GEDDDVDDDDDDGFGVE--------YLLARDDERSEVDG 557
Score = 37 (18.1 bits), Expect = 1.2e-29, Sum P(6) = 1.2e-29
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 199 DRRFYTSASAHNIQRLVSSMVPSVISKRPSAR--ELNMLKRKAKISSKDQSKSWS 251
+RR+ A + R+V K AR E L+R A +KD + WS
Sbjct: 135 ERRWKRGV-ARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWS 188
>POMBASE|SPAC25A8.01c [details] [associations]
symbol:fft3 "fun thirty related protein Fft3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003677 "DNA binding" evidence=ISM]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0032017 "positive regulation of Ran
protein signal transduction" evidence=IGI] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC25A8.01c GO:GO:0005524 EMBL:CU329670
GO:GO:0003677 GO:GO:0006338 GO:GO:0000790 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 GO:GO:0008094 OrthoDB:EOG4BCHW4 EMBL:AB027947
PIR:T38371 RefSeq:NP_593617.1 ProteinModelPortal:O42861
STRING:O42861 EnsemblFungi:SPAC25A8.01c.1 GeneID:2541531
KEGG:spo:SPAC25A8.01c HOGENOM:HOG000195581 OMA:NRASERY
NextBio:20802628 GO:GO:0032017 Uniprot:O42861
Length = 922
Score = 378 (138.1 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 115/333 (34%), Positives = 176/333 (52%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
+ L+ YQ GINWL L KL GIL D+MGLGKT Q A S + ++ + P
Sbjct: 385 IKLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFF-SLLMDKNING------P 437
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF----DKHNVIITSYD 1559
L+I P++ + +W E KF L L Y GS +R +RE+ D +NV++T+Y
Sbjct: 438 HLVIAPASTMENWLREFAKFCP-KLKIELYY-GSQVEREEIRERINSNKDSYNVMLTTYR 495
Query: 1560 VV---RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNIT 1616
+ + D +L +N C+ DEGH +KN S+ + + A R++L+GTP+QNN+
Sbjct: 496 LAATSKADRLFLRNQKFNVCVYDEGHYLKNRASERYRHLMSIPADFRVLLTGTPLQNNLK 555
Query: 1617 DLWSLFDFLMPGFLGTERQFQATYG-KPL-VAARDSKCSAKDAEAGVLAMEALHKQVM-- 1672
+L SL F++P F YG K L V K D E +L+ + + + M
Sbjct: 556 ELISLLAFILP------HVFD--YGLKSLDVIFTMKKSPESDFERALLSEQRVSRAKMMM 607
Query: 1673 -PFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADK 1731
PF+LRR K +VL LP+K +C+ S + + Y+ F+ +KQ ++S++ DE+ K
Sbjct: 608 APFVLRRKKSQVLDALPKKTRIIEFCEFSEEERRRYDDFA---SKQSVNSLL--DENVMK 662
Query: 1732 G--EGN-NVSAKASTHVFQALQYLLKLCSHPLL 1761
+ N N++ K ST F +Q L KL HP+L
Sbjct: 663 TNLDTNANLAKKKSTAGFVLVQ-LRKLADHPML 694
Score = 44 (20.5 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 23/80 (28%), Positives = 32/80 (40%)
Query: 969 PTYPT--KDSLLPYAELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNA 1026
P +P DSL E + G N Q+L M T +S+ E + LS D +
Sbjct: 26 PIFPPFIADSLSEATEKANVMGGGMNSRLQILSEMSKRVQATAPISSLE-HFKQLS-DIS 83
Query: 1027 ISFASKLQLLGSNSDGSESL 1046
SF S + + S SL
Sbjct: 84 PSFTSSANSINQPYNYSGSL 103
>DICTYBASE|DDB_G0282997 [details] [associations]
symbol:rad54 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282997 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281
EMBL:AAFI02000049 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K10875 RefSeq:XP_639303.1
ProteinModelPortal:Q54RP8 STRING:Q54RP8 EnsemblProtists:DDB0232369
GeneID:8623874 KEGG:ddi:DDB_G0282997 InParanoid:Q54RP8 OMA:ERPILAG
ProtClustDB:CLSZ2728985 Uniprot:Q54RP8
Length = 931
Score = 366 (133.9 bits), Expect = 1.9e-29, P = 1.9e-29
Identities = 94/275 (34%), Positives = 152/275 (55%)
Query: 1442 LKVTLRRYQQEGINW-----LAFLKRFKLHG-ILCDDMGLGKTLQASAIVASDIAERRAS 1495
L LR +Q+EG+ + L F FK +G IL DDMGLGK++QA I+ + + +
Sbjct: 279 LSQKLRPHQREGVQFMFDCLLGFRGGFKGNGCILADDMGLGKSIQAITILWTLLKQGPKG 338
Query: 1496 NSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE-QFDKHNVI 1554
S + ++I+ P TLVG+W E++K++ + + + R L E +F K +V+
Sbjct: 339 ESTAK--KAVIVAPCTLVGNWGQELKKWLGDGVNTVAIGESTKTGRAKLTELEFGKADVL 396
Query: 1555 ITSYDVVRKDADYLGQLLW-NYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQN 1613
I SYD +R + + ++ I DEGH +KN++ K T AV + A R+ILSGTPIQN
Sbjct: 397 IISYDQLRIYCEDICKITSIGLVICDEGHRLKNAEIKTTKAVSMIPTARRVILSGTPIQN 456
Query: 1614 NITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMP 1673
++T+ +++ +F+ PG L F+ Y P+VA+R+ S ++ E G L +
Sbjct: 457 DLTEFYAMVNFVNPGVLKNVATFKNVYDAPIVASRNPDASDEEKEIGRQRSLELSRLTSQ 516
Query: 1674 FLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
F+LRRT LP K+ +C L+ +QL +Y+
Sbjct: 517 FILRRTAFVNTQYLPPKVEYVIFCKLTPLQLSIYK 551
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 372 (136.0 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 100/295 (33%), Positives = 164/295 (55%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
++L+ YQ+ G+NWLA + + L+GIL D+MGLGKT+QA A +A E +N P
Sbjct: 495 LSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQE--GNNG-----P 547
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR----EQFDKHNVIITSYD 1559
LI+ P++ + +W E+ + + L Y GS ++R +R +++ +NVI+T+Y+
Sbjct: 548 HLIVVPASTIDNWLREVNLWCPT--LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605
Query: 1560 VVRKDAD---YLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNIT 1616
+D +L NY I DEGH++KN S + + A +RL+L+GTP+QNN+
Sbjct: 606 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
Query: 1617 DLWSLFDFLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL-H-KQVM- 1672
+L SL +F+MP F + + + + SK + D E + E + H KQ++
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMFS--------SKTKSAD-EQSIYEKERIAHAKQIIK 716
Query: 1673 PFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
PF+LRR K+EVL LP K + C +S Q +LY ++ K+ I+++ K E
Sbjct: 717 PFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLF-NRLKKSINNLEKNTE 770
Score = 59 (25.8 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 25/89 (28%), Positives = 38/89 (42%)
Query: 206 ASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVT 265
A ++Q + S VP+ K S+R N K K K + +++G +NV
Sbjct: 293 AEDQDMQYVSQSEVPN--GKEVSSRSQNYPKNATKTKLKQKFSMKAQNG-FNKKRKKNVF 349
Query: 266 TPKGSCGDPFNSNKAD--AVLDEDSSEHE 292
PK D + +D + LDED S E
Sbjct: 350 NPKRVVEDSEYDSGSDVGSSLDEDYSSGE 378
Score = 46 (21.3 bits), Expect = 4.6e-28, Sum P(3) = 4.6e-28
Identities = 26/116 (22%), Positives = 49/116 (42%)
Query: 383 KKMKFEDAP---P-PLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEP 438
K+ K E+AP P P SP++ + + + S N P + + + SSV P
Sbjct: 13 KRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDITEKTEDSSVPETP 72
Query: 439 ES----------NLDGLSHP--SKEAIDILEPRGQSGEKGDFLNSETLKNLPENSE 482
++ N G+ + S ++ D++ P + + N +T+ + E SE
Sbjct: 73 DNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTVIIVSEPSE 128
Score = 41 (19.5 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 1735 NNVSAKASTHVFQALQYLLKLCSHPLL 1761
NN+ + +T + + L K+ +HPLL
Sbjct: 763 NNL--EKNTEMCNVMMQLRKMANHPLL 787
Score = 40 (19.1 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 25/109 (22%), Positives = 41/109 (37%)
Query: 428 QLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGEKGDFLNSETLKNLPENSELMNWL 487
+L SS E + D S K +D E +S E + L E N+
Sbjct: 209 KLSSSSEPYEEDEFNDDQSI-KKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFD 267
Query: 488 KLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQA 536
K K E++ A+ L + + D+ YVS V +E +++
Sbjct: 268 KQELREVLKEHEWMYTEALESLKVFAEDQDMQYVSQSEVPNGKEVSSRS 316
>UNIPROTKB|F1NCD0 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 EMBL:AADN02013166
IPI:IPI00572933 Ensembl:ENSGALT00000006172 OMA:DYKEFVW
Uniprot:F1NCD0
Length = 560
Score = 365 (133.5 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 93/259 (35%), Positives = 146/259 (56%)
Query: 1441 ELKVTLRRYQQEGINWLAFLKRF-KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIE 1499
E+ L ++Q+EG+ +L L R + GIL DDMGLGKT+Q A + S + + S I
Sbjct: 75 EMHAKLFQHQREGVAFLYRLHREGRPGGILADDMGLGKTIQIIAFL-SGMFD---SELIR 130
Query: 1500 EIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQ-DRIALREQFDKHN-VIITS 1557
+ L+I P+TLV W E ++ + ++ G+++ +R E+ + N ++ITS
Sbjct: 131 HV---LLIMPTTLVSSWLAEFARWTPG--LRVKEFHGTSKTERTRNLEKIQRKNGIVITS 185
Query: 1558 YDVV----RKDADYLGQ-LLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQ 1612
Y ++ ++ A GQ +W+Y ILDE H IK +K T V + A HRL+L+GTP+Q
Sbjct: 186 YQMLINNWKQLASCHGQDFVWDYIILDEAHKIKCPSNKTTKCVYAIPAKHRLLLTGTPLQ 245
Query: 1613 NNITDLWSLFDFLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQV 1671
NN+ ++WSLFDF G LGT + F+ Y P+ AR+ + + G+ E L +
Sbjct: 246 NNLQEMWSLFDFACQGSLLGTAKTFRMEYENPITRAREKDATVGEKALGLKISENLMTII 305
Query: 1672 MPFLLRRTKDEVLSDLPEK 1690
P+ LRRTKD++ + EK
Sbjct: 306 KPYFLRRTKDDIKKNHAEK 324
Score = 40 (19.1 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 1749 LQYLLKLCSHPLLV 1762
L L KLC HP L+
Sbjct: 387 LTVLKKLCDHPRLL 400
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 366 (133.9 bits), Expect = 2.2e-29, P = 2.2e-29
Identities = 91/268 (33%), Positives = 144/268 (53%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TLR YQ G+NW+ L ++GIL D+MGLGKTLQ A++ R P
Sbjct: 106 TLRDYQVRGLNWMISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPG------PH 159
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVV 1561
+++ P + + +W E ++++ SL + +G R A +R+ + +V +TSY++V
Sbjct: 160 MVLVPKSTLHNWMNEFKRWVP-SLRAVC-LIGDKDARAAFIRDVMMPGEWDVCVTSYEMV 217
Query: 1562 RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSL 1621
K+ + W Y ++DE H IKN KSK++ V++ K +RL+L+GTP+QNN+ +LW+L
Sbjct: 218 IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWAL 277
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F + + D+K D + +E LH + PFLLRR K
Sbjct: 278 LNFLLPDVFNSADDFDSWF--------DTKNCLGDQKL----VERLHAVLKPFLLRRIKA 325
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
EV LP K Y LS +Q + Y +
Sbjct: 326 EVEKSLPPKKEVKIYLGLSKMQREWYTR 353
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 368 (134.6 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 101/295 (34%), Positives = 163/295 (55%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
++L+ YQ+ G+NWLA + + L+GIL D+MGLGKT+QA A +A E P
Sbjct: 490 LSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGNKG-------P 542
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR----EQFDKHNVIITSYD 1559
LI+ P++ + +W E+ + SL + L Y GS ++R +R +++ +NVI+T+Y+
Sbjct: 543 HLIVVPASTIDNWLREVNLWCP-SL-NVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYN 600
Query: 1560 VVRKDAD---YLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNIT 1616
+D +L NY I DEGH++KN S + + A +RL+L+GTP+QNN+
Sbjct: 601 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLL 660
Query: 1617 DLWSLFDFLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL-H-KQVM- 1672
+L SL +F+MP F + + + + SK D E + E + H KQ++
Sbjct: 661 ELMSLLNFVMPHMFSSSTSEIRRMFS--------SKTKPAD-EQSIYEKERIAHAKQIIK 711
Query: 1673 PFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
PF+LRR K+EVL LP K + C +S Q +LY ++ K+ I+++ K E
Sbjct: 712 PFILRRVKEEVLKLLPPKKDRIELCAMSEKQEQLYSGLF-NRLKKSINNLEKNTE 765
Score = 56 (24.8 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 22/73 (30%), Positives = 31/73 (42%)
Query: 222 VISKRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKAD 281
V + + AR N K KI K + ++G +NV PK + D + +D
Sbjct: 302 VTNGKEVARNQNYSKNATKIKMKQKISVKPQNG-FNKKRKKNVFNPKKAVEDSEYDSGSD 360
Query: 282 A--VLDEDSSEHE 292
A LDED S E
Sbjct: 361 AGSSLDEDYSSCE 373
Score = 49 (22.3 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 383 KKMKFEDAP---P-PLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEP 438
K+ K E+AP P P SP++ + + + S N P V + + SSV EP
Sbjct: 13 KRSKIEEAPEAAPQPSQARPSSPISLSAEEENAEGEGSRANTPDSDVTEKTEDSSVP-EP 71
Query: 439 ESN 441
N
Sbjct: 72 PDN 74
Score = 47 (21.6 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 1735 NNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSEL 1778
NN+ + +T + + L K+ +HPLL +PE L +S+L
Sbjct: 758 NNL--EKNTEMCNVMMQLRKMANHPLLHRQYYTPEKLK-EMSQL 798
Score = 46 (21.3 bits), Expect = 2.9e-28, Sum P(3) = 2.9e-28
Identities = 29/115 (25%), Positives = 51/115 (44%)
Query: 176 DLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNML 235
+L D+ + EDL KL + F +R + + + S+M ++ + +
Sbjct: 146 ELEDLSELEDLKDAKLQTLKELFPQR--SDSDLLKLIESTSTMDGAIAAALLMFGDAGGG 203
Query: 236 KRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSE 290
RK K+SS SE+ D V Q+V P+G G+ N + A+A + + E
Sbjct: 204 PRKRKLSSS------SEEDD--VNDDQSVKQPRGDRGEESNES-AEASSNWEKQE 249
>POMBASE|SPAC20G8.08c [details] [associations]
symbol:fft1 "fun thirty related protein Fft1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20G8.08c
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 PIR:T38130 RefSeq:NP_593325.1
ProteinModelPortal:P87114 EnsemblFungi:SPAC20G8.08c.1
GeneID:2541983 KEGG:spo:SPAC20G8.08c OrthoDB:EOG4BCHW4
NextBio:20803065 Uniprot:P87114
Length = 944
Score = 378 (138.1 bits), Expect = 3.0e-29, Sum P(2) = 3.0e-29
Identities = 100/272 (36%), Positives = 148/272 (54%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
+TL+ YQ G+NWL + + KL GIL D+MGLGKT Q + +AS + E+ I+ H
Sbjct: 412 ITLKSYQIVGLNWLCLMYKAKLSGILADEMGLGKTCQVISFLAS-LKEK----GIQNRH- 465
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF-DKH-NVIITSYDVV 1561
L++ PS+ +G+W E EKF SL Y G+ +RI R D +V++T+Y +
Sbjct: 466 -LVVVPSSTLGNWLREFEKFCP-SLRVE-SYSGTQSERINKRYYLMDTDFDVLVTTYQLA 522
Query: 1562 ---RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
R D +L + ++ I DEGH +KN S+ + + A RL+++GTP+QNN+ +L
Sbjct: 523 SGSRDDRSFLRKQRFDISIFDEGHYLKNRMSERYKHLMNIPANFRLLITGTPLQNNLKEL 582
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH--KQVM-PFL 1675
SL F++P Q G ++ + S D E L+ E + K +M PF+
Sbjct: 583 ISLLAFMLPKVFDNNMQ-----GLDIIY-KIKTTSDGDIERAYLSQERISRAKTIMNPFI 636
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLY 1707
LRR K+ VLSDLP KI YC + QL LY
Sbjct: 637 LRRRKENVLSDLPPKIQHVEYCHMEETQLSLY 668
Score = 41 (19.5 bits), Expect = 3.0e-29, Sum P(2) = 3.0e-29
Identities = 20/87 (22%), Positives = 35/87 (40%)
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741
EV+SD + D+Y L LK ++ K+ + S++K ++ +
Sbjct: 734 EVMSDFELHKLADQYRHLHPFALKGKPWMDSAKVKK-LCSLLKKSRPNER----ILIFSQ 788
Query: 1742 STHVFQALQYLLKLCSHPLLVLGDKSP 1768
T V L+Y+L L L +P
Sbjct: 789 FTQVLDILEYVLNTLDLEFLRLDGSTP 815
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 382 (139.5 bits), Expect = 3.2e-29, Sum P(3) = 3.2e-29
Identities = 95/270 (35%), Positives = 147/270 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
+R YQ EG+ WL L ++GIL D+MGLGKT+Q A +A I +R P L
Sbjct: 223 MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMI-QRGVPG------PFL 275
Query: 1506 IICPSTLVGHWAFEIEKFI-DVSLMSTLQYVGSAQDRIALREQFDK-------HNVIITS 1557
+ P + + +W E ++F D+ T+ Y G+ ++R L K H V+ITS
Sbjct: 276 VCGPLSTLPNWMAEFKRFTPDIP---TMLYHGTQEERQKLVRNIYKRKGTLQIHPVVITS 332
Query: 1558 YDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITD 1617
+++ +D + L W Y I+DEGH IKN K ++ +K+ A ++L+L+GTP+QNN+++
Sbjct: 333 FEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSE 392
Query: 1618 LWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLR 1677
LWSL +FL+P + F++ + ++ AK+ E VL M LH+ + PFLLR
Sbjct: 393 LWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM--LHQILTPFLLR 450
Query: 1678 RTKDEVLSDLPEKIIQDRYCDLSAVQLKLY 1707
R K +V ++P K Y LS Q Y
Sbjct: 451 RLKSDVALEVPPKREVVVYAPLSKKQEIFY 480
Score = 41 (19.5 bits), Expect = 3.2e-29, Sum P(3) = 3.2e-29
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 1736 NVSAKASTHV-FQALQYLL-KLCSHPLLV 1762
N+ ++ ++ Q + LL K C+HP L+
Sbjct: 549 NIPVESEVNLKLQNIMMLLRKCCNHPYLI 577
Score = 41 (19.5 bits), Expect = 3.2e-29, Sum P(3) = 3.2e-29
Identities = 19/87 (21%), Positives = 42/87 (48%)
Query: 143 IAIDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLND-MIKDEDLIVHKLNSHGNGFDRR 201
+ + KN + + +K ++++ G + ++ ++++ M K+E L V K N N +
Sbjct: 107 LKVKKGKNSIDA-SEEKPVMRKKRGRE--DESYNISEVMSKEEILSVAKKNKKENEDENS 163
Query: 202 FYTSASAHNIQRLVSSMVPSVISKRPS 228
T+ ++Q+ S S+I R S
Sbjct: 164 SSTNLCVEDLQKNKDSN--SIIKDRLS 188
Score = 39 (18.8 bits), Expect = 5.2e-29, Sum P(3) = 5.2e-29
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 152 RERLARQKQNLKRRLG---LDVCEQ 173
+E+L R+K++LK + G +D E+
Sbjct: 97 KEKLERKKESLKVKKGKNSIDASEE 121
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 365 (133.5 bits), Expect = 3.6e-29, P = 3.6e-29
Identities = 98/305 (32%), Positives = 169/305 (55%)
Query: 1415 SRNAEDAQFL-EQLLDNSHIDDYKLGTE---LKVTLRRYQQEGINWLAFLKRFKLHGILC 1470
+ + EDA+ L E+ D+ +++ + LR YQ +G+NWL L + K+ GIL
Sbjct: 161 TEHEEDAELLKEEDSDDDESIEFQFRESPAYVNGQLRPYQIQGVNWLVSLHKNKIAGILA 220
Query: 1471 DDMGLGKTLQASAIVASDIAERRASNSIEEIH-PSLIICPSTLVGHWAFEIEKFI-DVSL 1528
D+MGLGKTLQ + + IE+I P L+I P + + +W EI ++ DV+
Sbjct: 221 DEMGLGKTLQTISFLGY-------LRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNA 273
Query: 1529 MSTLQYVGSAQDRIALREQF---DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIK 1585
LQ G ++R L ++ +V+I SY+++ ++ L ++ W Y I+DE H IK
Sbjct: 274 F-ILQ--GDKEERAELIQKKLLGCDFDVVIASYEIIIREKSPLKKINWEYIIIDEAHRIK 330
Query: 1586 NSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLV 1645
N +S ++ +++ + +RL+++GTP+QNN+ +LW+L +FL+P + F +
Sbjct: 331 NEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDAQDFDDWFS---- 386
Query: 1646 AARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEV-LSDLPEKIIQDRYCDLSAVQL 1704
S+ + +D + V + LH + PFLLRR K +V S LP+K + + Y +S++Q
Sbjct: 387 ----SESTEEDQDKIV---KQLHTVLQPFLLRRIKSDVETSLLPKKEL-NLYVGMSSMQK 438
Query: 1705 KLYEK 1709
K Y+K
Sbjct: 439 KWYKK 443
>CGD|CAL0000882 [details] [associations]
symbol:orf19.607 species:5476 "Candida albicans" [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000882 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000108 HOGENOM:HOG000170952 KO:K10841
RefSeq:XP_714234.1 ProteinModelPortal:Q59XB8 STRING:Q59XB8
GeneID:3644142 KEGG:cal:CaO19.607 Uniprot:Q59XB8
Length = 1055
Score = 304 (112.1 bits), Expect = 3.9e-29, Sum P(4) = 3.9e-29
Identities = 63/171 (36%), Positives = 99/171 (57%)
Query: 1549 DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSG 1608
+K +V++T+Y +R + ++ W Y +LDEGH I+N S I++ K++K +R+ILSG
Sbjct: 401 EKGHVLVTTYVGLRIYSKHILPREWGYVVLDEGHKIRNPDSDISLTCKKIKTVNRIILSG 460
Query: 1609 TPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH 1668
TPIQNN+ +LWSLFDF+ PG LGT FQ + P+ + + + L
Sbjct: 461 TPIQNNLIELWSLFDFVFPGRLGTLPVFQQEFSIPINIGGYANSNNLQVKTAYKCAVVLR 520
Query: 1669 KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEI 1719
+ P++LRR K +V DLP+K + L+ +Q +LYE F S+ + I
Sbjct: 521 DLISPYMLRRLKSDVAQDLPKKNEMVLFVKLTKIQQELYESFLQSEDLESI 571
Score = 116 (45.9 bits), Expect = 3.9e-29, Sum P(4) = 3.9e-29
Identities = 31/107 (28%), Positives = 55/107 (51%)
Query: 1434 DDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERR 1493
+ +KL ++ +L YQ+ + WL L K GI+ D+MGLGKT+Q + S +A
Sbjct: 259 EKFKLPGDIYPSLFDYQKTCVQWLWELYTQKTGGIIGDEMGLGKTIQ----IISFLAGLH 314
Query: 1494 ASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQD 1540
S +++ P L++ P+T++ W E ++ L +GS +
Sbjct: 315 YSGLLDK--PVLVVVPATVLNQWVNEFHRWWPPLRCIILHSIGSGMN 359
Score = 50 (22.7 bits), Expect = 3.9e-29, Sum P(4) = 3.9e-29
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1740 KASTHVFQALQYLLKLCSHPLLVLGD 1765
K +V + L K+C+HP LV D
Sbjct: 573 KGKRNVLMGVDILRKICNHPDLVYRD 598
Score = 50 (22.7 bits), Expect = 3.9e-29, Sum P(4) = 3.9e-29
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 1013 ANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRMLTT 1064
A + D E DN+I + ++ LG + SES+ + D ES+ Q+ L T
Sbjct: 175 AYQSDSEVDDNDNSID-KNAVRDLGETNQESESVLHNIDDGDESLYQQRLQT 225
>ZFIN|ZDB-GENE-060810-50 [details] [associations]
symbol:rad54b "RAD54 homolog B (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060810-50 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX511010
IPI:IPI00513586 Ensembl:ENSDART00000138496 Bgee:E9QHY4
Uniprot:E9QHY4
Length = 917
Score = 363 (132.8 bits), Expect = 3.9e-29, P = 3.9e-29
Identities = 103/354 (29%), Positives = 176/354 (49%)
Query: 1435 DYKLGTELKVTLRRYQQEGINWL-AFLKRFKLHG----ILCDDMGLGKTLQASAIVASDI 1489
D + L LR +Q+EG+ +L L +L G IL D+MGLGKTLQ ++ + +
Sbjct: 297 DVVIDPHLTNHLRPHQKEGVVFLYECLMGMRLAGRCGAILADEMGLGKTLQCVCVLWT-L 355
Query: 1490 AERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD 1549
+ + +L++CP +LV +WA E K++ +S Y R+
Sbjct: 356 LRQGPYGGRPVMKRALVVCPGSLVKNWAAEFNKWLGRERISV--YTVDQDHRVEDFVSSP 413
Query: 1550 KHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
+V++ SY+++ + D L +L + I DEGH +KNS K A+ L RLIL+GT
Sbjct: 414 LCSVLVISYEMLLRSVDRLKELDFGVLICDEGHRLKNSNIKTAGALTALSCTRRLILTGT 473
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
P+QN++ + +S+ +F+ PG LGT ++ Y +P++ +R C+ ++ G L +
Sbjct: 474 PVQNDLQEFYSIIEFVNPGILGTSAAYRKIYEEPILRSRQPSCTEEERCIGEERAAELFR 533
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESA 1729
F LRRT++ + L E+I +C + +Q++LY ++ + S
Sbjct: 534 LTGVFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYRVLLSTRPIRACLS-------- 585
Query: 1730 DKGEGNNVSAKASTHVFQALQYLLKLCSHPLLV---LGDKSPESLLCHLSELFP 1780
G++ S H+ + L KLC+HP L+ L +K+ E + ELFP
Sbjct: 586 ----GSHTYTH-SPHLV-CINALKKLCNHPALLYNTLQEKADEMYEGEVKELFP 633
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 406 (148.0 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
Identities = 104/278 (37%), Positives = 149/278 (53%)
Query: 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
LK +LR YQ G++WL + KL+GIL D+MGLGKT+Q A++A +A + +
Sbjct: 910 LKHSLREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAH-LACAKGNWG---- 964
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSY 1558
P LI+ PS+++ +W E +K+ L Y GS ++R R + K N V ITSY
Sbjct: 965 -PHLIVVPSSVMLNWEMEFKKWCPG--FKILTYYGSQKERKLKRVGWTKPNAFHVCITSY 1021
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
+V +D + W Y ILDE IKN KS+ + RL+L+GTP+QN++ +L
Sbjct: 1022 KLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMEL 1081
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL FLMP + R+F+ + P+ + + E + LHK + PFLLRR
Sbjct: 1082 WSLMHFLMPYVFSSHREFKEWFSNPMTGMIEG-----NMEYNETLITRLHKVIRPFLLRR 1136
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAK 1716
K EV +P+K C LS Q LYE F S+AK
Sbjct: 1137 LKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFM-SRAK 1173
Score = 57 (25.1 bits), Expect = 7.6e-29, Sum P(5) = 7.6e-29
Identities = 36/142 (25%), Positives = 56/142 (39%)
Query: 342 ELGPDGALNVEFKDKDSITMKREREIDLNVQVPAD-EPEPLLKKMKFEDAPPPLMDTMVS 400
E D + +++ + ++EID ++ D E LL K K E P P +
Sbjct: 742 EASDDDENTISKQEEAEQEIDHKKEID-ELEADNDLSVEQLLAKYKSEQPPSPKRRKLAP 800
Query: 401 -PVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKV-----EPESNLDGL------SHP 448
D + S VD + + A + + + DLS+VK E + DGL +
Sbjct: 801 RDPELDSDDDSTAVDSTEESEDAATEDEE-DLSTVKTDTDMEEQDEQEDGLKSLMADADA 859
Query: 449 SKEAIDILEPRGQSGEKGDFLN 470
+ A G SG K D LN
Sbjct: 860 TSGAAGSGSTAGASGNKDDMLN 881
Score = 47 (21.6 bits), Expect = 7.6e-29, Sum P(5) = 7.6e-29
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 27 AARQIGEIAKTHPQDLNSLLRKVSQ 51
++ ++G ++ T QDLN+L +++ Q
Sbjct: 168 SSSEVGGLSSTALQDLNALKKRILQ 192
Score = 45 (20.9 bits), Expect = 1.2e-27, Sum P(5) = 1.2e-27
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 351 VEFKDKDSITMKREREIDLNVQVPADEPEPLLKKM 385
VE+K + I KR++ +D ++ D+ E +++
Sbjct: 596 VEYKHQTKIEEKRKQALDQHLSFIVDQTEKFSQQL 630
Score = 42 (19.8 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
Identities = 21/79 (26%), Positives = 34/79 (43%)
Query: 421 PAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPR--GQSGEKGDFLNSETLKNLP 478
PA S N L V S + GLS + + ++ L+ R Q + L L+N+
Sbjct: 151 PAESSNIVSSLLPASVASSSEVGGLSSTALQDLNALKKRILQQKLQILRNLKERHLENVS 210
Query: 479 ENSELMNWLKLARH-SWQK 496
E L N + + +W+K
Sbjct: 211 EYFYLQNGGSMMDYPAWRK 229
Score = 42 (19.8 bits), Expect = 2.5e-27, Sum P(5) = 2.5e-27
Identities = 24/99 (24%), Positives = 40/99 (40%)
Query: 362 KREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNISIKVDDSGCNLP 421
KRE + D + +++ E + K + EDA + V + DD +LP
Sbjct: 653 KRESDDDFRPESGSEDDEETIAKAE-EDAAD-----VKEEVTALAKESEMDFDDFLNDLP 706
Query: 422 AGSVNGQLDL------SSVKVEPESNLDGLSHPSKEAID 454
G + + L S++K E + D +KEA D
Sbjct: 707 PGYLENRDKLMKEEQSSAIKTETPDDSDDSEFEAKEASD 745
Score = 40 (19.1 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1745 VFQALQYLLKLCSHP 1759
V L L K+C+HP
Sbjct: 1186 VINVLMQLRKVCNHP 1200
Score = 40 (19.1 bits), Expect = 7.7e-29, Sum P(3) = 7.7e-29
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 1012 SANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQRML 1062
SA I V + N +S + S+ G LS L D+ ++K+R+L
Sbjct: 144 SAASI-VGPAESSNIVSSLLPASVASSSEVGG--LSSTALQDLNALKKRIL 191
Score = 38 (18.4 bits), Expect = 7.6e-29, Sum P(5) = 7.6e-29
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 195 GNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELN 233
G D S N Q V S + S P+A E N
Sbjct: 291 GAPLDGNISNSTVKTNTQSQVPSKIGSFTESTPAATESN 329
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 379 (138.5 bits), Expect = 5.2e-29, Sum P(2) = 5.2e-29
Identities = 106/330 (32%), Positives = 179/330 (54%)
Query: 1429 DNSHIDDYKLGTELKV---TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIV 1485
+N +KL + K+ +R YQ G+NW+A L + K++GIL D+MGLGKT+Q +++
Sbjct: 522 NNGPTFSHKLVAQPKIINKVMRNYQLIGLNWMAVLYKEKINGILADEMGLGKTVQTISLL 581
Query: 1486 ASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR 1545
A I E N P L++ P+T++ +W E + + SL S ++Y G+ ++R LR
Sbjct: 582 AH-IKEAYNDNG-----PHLVVVPATILANWEREFQTWCP-SL-SIVRYYGNLREREELR 633
Query: 1546 EQFDKH------NVIITSYDVV--RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQ 1597
+ K NVI+T+Y+++ D +L + +++ ILDE IKNS SK + +
Sbjct: 634 YELKKKRPGKDFNVILTTYNLLFANNDRGFLKRFDYSFLILDEAQNIKNSDSKRYKNIFK 693
Query: 1598 LKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDA 1657
+ A HRL+L+GTP+QNN+ +LWSL +FLMP G+ ++ + L + + D
Sbjct: 694 IGAHHRLLLTGTPLQNNLYELWSLLNFLMPHIFGSVKKDNYLLNQLL------EYNGDDC 747
Query: 1658 EAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKF---SGSQ 1714
++ + M+ K + PF+LRR K V +L KI C L Q + Y+ S SQ
Sbjct: 748 DSAITRMK---KILSPFILRRLKSTVSKELKPKIEHVEICKLPKFQDETYKNIIERSKSQ 804
Query: 1715 AKQEISSMVKVD-ESADKGEGNNVSAKAST 1743
K ++K + E +K + + +++ S+
Sbjct: 805 WKLRNELLLKKEKEEKEKEKQSLINSSNSS 834
Score = 41 (19.5 bits), Expect = 5.2e-29, Sum P(2) = 5.2e-29
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 224 SKRPSARELNMLKRKAKISSKDQSKSWSEDGDME 257
+K+ S N K+ + I K QSK ED + E
Sbjct: 87 NKKSSTSSNN--KKSSPIKKKKQSKKVEEDEEDE 118
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 373 (136.4 bits), Expect = 5.2e-29, Sum P(4) = 5.2e-29
Identities = 100/295 (33%), Positives = 162/295 (54%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
++L+ YQ+ G+NWLA + + L+GIL D+MGLGKT+QA A +A E P
Sbjct: 493 LSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGNKG-------P 545
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR----EQFDKHNVIITSYD 1559
LI+ P++ + +W E+ + ++ L Y GS ++R +R +++ +NVI+T+Y+
Sbjct: 546 HLIVVPASTIDNWLREVNLWCPT--LNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYN 603
Query: 1560 VVRKDAD---YLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNIT 1616
+D +L NY I DEGH++KN S + + A +RL+L+GTP+QNN+
Sbjct: 604 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLL 663
Query: 1617 DLWSLFDFLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL-H-KQVM- 1672
+L SL +F+MP F + + + + SK D E + E + H KQ++
Sbjct: 664 ELMSLLNFVMPHMFSSSTSEIRRMFS--------SKTKPAD-EQSIYEKERIAHAKQIIK 714
Query: 1673 PFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
PF+LRR K+EVL LP K Q C +S Q +LY ++ K+ I+++ K E
Sbjct: 715 PFILRRVKEEVLKLLPPKKDQIELCAMSEKQEQLYSGLF-NRLKKSINNLEKNTE 768
Score = 61 (26.5 bits), Expect = 5.2e-29, Sum P(4) = 5.2e-29
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 222 VISKRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKAD 281
V + + AR N K AKI K + ++G +NV PK + D + +D
Sbjct: 305 VTNGKEVARNQNYSKNAAKIKMKQKISMKPQNG-FNKKRKKNVFNPKKAVEDSEYDSGSD 363
Query: 282 A--VLDEDSSEHE 292
A LDED S E
Sbjct: 364 AGSSLDEDYSSCE 376
Score = 47 (21.6 bits), Expect = 2.8e-28, Sum P(3) = 2.8e-28
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 383 KKMKFEDAP---P-PLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEP 438
K+ K E+AP P P SP++ + + + S N P V + + SSV EP
Sbjct: 13 KRSKIEEAPEAAPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDVTEKTEDSSVP-EP 71
Query: 439 ESN 441
N
Sbjct: 72 PDN 74
Score = 41 (19.5 bits), Expect = 5.2e-29, Sum P(4) = 5.2e-29
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 1735 NNVSAKASTHVFQALQYLLKLCSHPLL 1761
NN+ + +T + + L K+ +HPLL
Sbjct: 761 NNL--EKNTEMCNVMMQLRKMANHPLL 785
Score = 39 (18.8 bits), Expect = 5.2e-29, Sum P(4) = 5.2e-29
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 73 QNVKLTTLKELF 84
++ KL TLKELF
Sbjct: 157 KDAKLQTLKELF 168
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 362 (132.5 bits), Expect = 6.9e-29, P = 6.9e-29
Identities = 90/261 (34%), Positives = 143/261 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ A++ R P +
Sbjct: 195 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPG------PHM 248
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ SL + +VG R A +R++ + +V +TSY++V
Sbjct: 249 VLVPKSTLYNWMNEFKRWVP-SLR-VICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 306
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K+ +RL+L+GTP+QNN+ +LW+L
Sbjct: 307 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 366
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+K D + +E LH + PFLLRR K +
Sbjct: 367 NFLLPDVFNSADDFDSWF--------DTKNCLGDQKL----VERLHAVLKPFLLRRIKTD 414
Query: 1683 VLSDLPEKIIQDRYCDLSAVQ 1703
V LP K Y LS +Q
Sbjct: 415 VEKSLPPKKEIKVYLGLSKMQ 435
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 362 (132.5 bits), Expect = 6.9e-29, P = 6.9e-29
Identities = 90/261 (34%), Positives = 143/261 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ A++ R P +
Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPG------PHM 236
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ SL + +VG R A +R++ + +V +TSY++V
Sbjct: 237 VLVPKSTLYNWMNEFKRWVP-SLR-VICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVI 294
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K+ +RL+L+GTP+QNN+ +LW+L
Sbjct: 295 KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 354
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+K D + +E LH + PFLLRR K +
Sbjct: 355 NFLLPDVFNSADDFDSWF--------DTKNCLGDQKL----VERLHAVLKPFLLRRIKTD 402
Query: 1683 VLSDLPEKIIQDRYCDLSAVQ 1703
V LP K Y LS +Q
Sbjct: 403 VEKSLPPKKEIKVYLGLSKMQ 423
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 379 (138.5 bits), Expect = 7.0e-29, Sum P(3) = 7.0e-29
Identities = 94/270 (34%), Positives = 146/270 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
+R YQ EG+ WL L ++GIL D+MGLGKT+Q A +A + ER P L
Sbjct: 222 MRWYQVEGMEWLRMLWENGINGILADEMGLGKTIQCIATIAL-MVERGVPG------PFL 274
Query: 1506 IICPSTLVGHWAFEIEKFI-DVSLMSTLQYVGSAQDRIAL------REQFDK-HNVIITS 1557
+ P + + +W E ++F ++ LM Y G+ Q+R L R+ K H V+ITS
Sbjct: 275 VCGPLSTLPNWMSEFKRFTPEIPLML---YHGAQQERRKLVRKIHGRQGSLKIHPVVITS 331
Query: 1558 YDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITD 1617
+++ +D + L W Y I+DEGH IKN ++ +K+ A ++L+L+GTP+QNN+ +
Sbjct: 332 FEIAMRDRNALQSCFWKYLIVDEGHRIKNMNCRLIRELKRFNADNKLLLTGTPLQNNLAE 391
Query: 1618 LWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLR 1677
LWSL +FL+P + F++ + + AK+ E +L M LH+ + PFLLR
Sbjct: 392 LWSLLNFLLPDVFDDLKSFESWFDITSITETAEDIIAKEKEQNILHM--LHQILTPFLLR 449
Query: 1678 RTKDEVLSDLPEKIIQDRYCDLSAVQLKLY 1707
R K +V ++P K Y L+ Q Y
Sbjct: 450 RLKSDVALEVPPKREVVVYAPLAKKQETFY 479
Score = 44 (20.5 bits), Expect = 7.0e-29, Sum P(3) = 7.0e-29
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 659 LAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRH 718
++EI S+EE++ V SK E + +E + E D Q N S++ RL +RH
Sbjct: 138 ISEIMSKEEILS--VAKKSKVE-NQDESSAGNLCPE--DLQKNGDSNSVIKDRLCQAVRH 192
Query: 719 S 719
S
Sbjct: 193 S 193
Score = 41 (19.5 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 223 ISKRPSARELNMLKRKAKISSKDQSKS 249
IS+ S E+ + +K+K+ ++D+S +
Sbjct: 138 ISEIMSKEEILSVAKKSKVENQDESSA 164
Score = 41 (19.5 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 832 KSHFKAAAKMRAVKLENDSSGSVDLPQE--RNGDTSTNSV 869
K + AK V+ +++SS P++ +NGD+ NSV
Sbjct: 144 KEEILSVAKKSKVENQDESSAGNLCPEDLQKNGDS--NSV 181
Score = 38 (18.4 bits), Expect = 7.0e-29, Sum P(3) = 7.0e-29
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1749 LQYLLKLCSHPLLV 1762
+ L K C+HP L+
Sbjct: 564 MMLLRKCCNHPYLI 577
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 377 (137.8 bits), Expect = 7.7e-29, Sum P(4) = 7.7e-29
Identities = 97/271 (35%), Positives = 142/271 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L+ YQ+ G+NWLA L + L+GIL D+MGLGKT+QA A +A E P L
Sbjct: 433 LKPYQKIGLNWLALLHKHGLNGILADEMGLGKTIQAIAFLAHIYQEGDRG-------PHL 485
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH----NVIITSYDVV 1561
I+ P++ + +W E+ + L YVGS +DR LR NVI+T+Y+
Sbjct: 486 IVVPASTLDNWIREVNLWCP-ELNVLFYYVGSQEDRKHLRADISNRVVDFNVIVTTYNCA 544
Query: 1562 RKDAD---YLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
+D ++ NY I DEGH++KN S + ++ A HRL+L+GTP+QNN+ +L
Sbjct: 545 ISSSDDRSLFRKVKLNYAIFDEGHMLKNMSSVRYQQLMRINAKHRLLLTGTPVQNNLLEL 604
Query: 1619 WSLFDFLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVM-PFLL 1676
SL +F+MP F + + + + A + K+ A KQ++ PF+L
Sbjct: 605 MSLLNFVMPHMFSSSTSEIRRMFSSKAKTAEEQSTYEKERIAHA-------KQIIKPFIL 657
Query: 1677 RRTKDEVLSDLPEKIIQDRYCDLSAVQLKLY 1707
RR KDEVL LP K C +S Q +LY
Sbjct: 658 RRVKDEVLKQLPPKKDHIELCAMSEKQEQLY 688
Score = 58 (25.5 bits), Expect = 7.7e-29, Sum P(4) = 7.7e-29
Identities = 45/194 (23%), Positives = 78/194 (40%)
Query: 221 SVISKRPSA---RELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNS 277
S I + P A REL+ K + + D S SED EVP + V+ K + +
Sbjct: 1 SSIPETPEAERTRELSYFKHRRGVHFLDVSSD-SED---EVP--RKVSASKEN-----KA 49
Query: 278 NKADAVL-DEDSSEHEGDGLWPFRSFVE-----QLILDMFDPVWEVRHGSVMALREILTH 331
+ D +L EDSSE + ++ + QL+ D ++R+ + L+E+
Sbjct: 50 PRKDVILISEDSSEDD-QPVYQLQKAAHMNNGNQLVDLQEDAEEDIRNAKLQTLKELFPQ 108
Query: 332 HGAS--AGVFMPELGPDGALNVEFKDKDSITMKREREIDLNVQVPADEPEP-LLKKMKFE 388
+ D A+ K D T R+R ++ + + E + + KK K +
Sbjct: 109 RSDQDLLQLVKSTCSMDEAIAACLKFNDEATASRKRRLN-DSHINGKESDKHMTKKPKAD 167
Query: 389 DAPPPLMDTMVSPV 402
P +D S +
Sbjct: 168 YHGPEALDGSKSEI 181
Score = 44 (20.5 bits), Expect = 2.1e-27, Sum P(4) = 2.1e-27
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 73 QNVKLTTLKELF 84
+N KL TLKELF
Sbjct: 95 RNAKLQTLKELF 106
Score = 38 (18.4 bits), Expect = 7.7e-29, Sum P(4) = 7.7e-29
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1748 ALQYLLKLCSHPLL 1761
A+ L K+ +HPLL
Sbjct: 711 AMMQLRKMANHPLL 724
Score = 38 (18.4 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 556 LLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPAC 597
L+ +Q E +IR+ L +K L R + LL V C
Sbjct: 83 LVDLQEDAEEDIRNAKLQTLKELFPQRSDQ--DLLQLVKSTC 122
Score = 37 (18.1 bits), Expect = 7.7e-29, Sum P(4) = 7.7e-29
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 478 PENSELMNWLKLARHS 493
P SE+ NW +++ +S
Sbjct: 236 PSPSEVSNWTEVSANS 251
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 396 (144.5 bits), Expect = 8.4e-29, Sum P(3) = 8.4e-29
Identities = 99/324 (30%), Positives = 168/324 (51%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TLR YQ G+ W+ L KL+GIL D+MGLGKT+Q A++A + E + + P
Sbjct: 980 TLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEFKGNYG-----PH 1033
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQ---FDKHNVIITSYDVV 1561
LII P+ ++ +W E+ ++ +S + YVG+ R L Q K NV++T+Y+ +
Sbjct: 1034 LIIVPNAVLVNWKSELHTWLPS--VSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEFI 1091
Query: 1562 RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSL 1621
D L ++ W Y I+DE +K+ +S + + + + RL+L+GTP+QN++ +LWSL
Sbjct: 1092 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSL 1151
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVA---ARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
+ L+P + F + +P A + + + E V+ + LH+ + PF+LRR
Sbjct: 1152 LNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRR 1211
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNV- 1737
++V LP K+ C +SA+Q +Y+ + + V D+ + + N +
Sbjct: 1212 RVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLR-----VDPDDEKLRAQKNPIY 1266
Query: 1738 SAKASTHVFQALQYLLKLCSHPLL 1761
AK + L K C+HPLL
Sbjct: 1267 QAKIYRTLNNRCMELRKACNHPLL 1290
Score = 46 (21.3 bits), Expect = 8.4e-29, Sum P(3) = 8.4e-29
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 210 NIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSKSWS 251
N+Q L S P S +PS + +R+ + SS+ ++++ S
Sbjct: 174 NMQDLNPSSQPQASSSKPSGDQFARGERQTESSSQQRNETKS 215
Score = 38 (18.4 bits), Expect = 8.4e-29, Sum P(3) = 8.4e-29
Identities = 6/24 (25%), Positives = 17/24 (70%)
Query: 567 IRHGSLLGIKYLVAVRQEMLHGLL 590
+R L+G+++++++ L+G+L
Sbjct: 981 LRDYQLVGLQWMLSLYNNKLNGIL 1004
Score = 37 (18.1 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 1022 SADNAISFASKLQLLGSNSDGSESLSRQMLDDIESI 1057
+A+N ++ A ++ L +G+E LS++ D ++ I
Sbjct: 674 NANNNLTLAYDIKDLICE-EGAEFLSKKRTDSLKKI 708
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 378 (138.1 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 101/295 (34%), Positives = 163/295 (55%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
++L+ YQ+ G+NWLA + + L+GIL D+MGLGKT+QA A +A E P
Sbjct: 498 LSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNKG-------P 550
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR----EQFDKHNVIITSYD 1559
LI+ P++ + +W E+ + + L Y GS ++R +R +++++NVI+T+Y+
Sbjct: 551 HLIVVPASTIDNWLREVNLWCPT--LKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 608
Query: 1560 VVRKDAD---YLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNIT 1616
+D +L NY I DEGH++KN S + + A +RL+L+GTP+QNN+
Sbjct: 609 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 668
Query: 1617 DLWSLFDFLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL-H-KQVM- 1672
+L SL +F+MP F + + + + SK + D E + E + H KQ++
Sbjct: 669 ELMSLLNFVMPHMFSSSTSEIRRMFS--------SKTKSAD-EQSIYEKERIAHAKQIIK 719
Query: 1673 PFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
PF+LRR K+EVL LP K Q C +S Q +LY ++ K+ I++M K E
Sbjct: 720 PFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLF-NRLKKSINNMEKNTE 773
Score = 46 (21.3 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 988 GKMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLS 1047
G+ N+ S+L E + + + I + + + SFA KL S DG+ + +
Sbjct: 141 GRNNNDLSEL----EDQQNLSPLSYSRNIRYKEIIPELVYSFAIKLIESTSTMDGAIAAA 196
Query: 1048 RQMLDDIES--IKQRMLTTS 1065
M D E ++R L++S
Sbjct: 197 LLMFGDAEGGGPRKRKLSSS 216
Score = 41 (19.5 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 1735 NNVSAKASTHVFQALQYLLKLCSHPLL 1761
NN+ + +T + + L K+ +HPLL
Sbjct: 766 NNM--EKNTEMCNVMMQLRKMANHPLL 790
>WB|WBGene00004298 [details] [associations]
symbol:rad-54 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0033554 "cellular
response to stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0033554 GO:GO:0003677 GO:GO:0004386
EMBL:AL034364 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG EMBL:AL110471
PIR:T26238 RefSeq:NP_492438.1 ProteinModelPortal:G5EEN6 SMR:G5EEN6
IntAct:G5EEN6 EnsemblMetazoa:W06D4.6 GeneID:172728
KEGG:cel:CELE_W06D4.6 CTD:172728 WormBase:W06D4.6 NextBio:876761
Uniprot:G5EEN6
Length = 818
Score = 358 (131.1 bits), Expect = 1.0e-28, P = 1.0e-28
Identities = 117/380 (30%), Positives = 194/380 (51%)
Query: 1418 AEDAQFLEQLLDNSHI-DDYKLGTELKVTLRRYQQEGIN--W--LAFLKRFKLHG-ILCD 1471
+E AQ E H+ D +G K+ LR +Q++G+ W + + + HG I+ D
Sbjct: 177 SEHAQLKEDKDRKVHVVADPVVG---KI-LRPHQRDGVKFMWDCVTGINIPEFHGCIMAD 232
Query: 1472 DMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMST 1531
+MGLGKTLQ +++ + + R++ ++ + S+I+CPS+LV +W EI+K++ L +
Sbjct: 233 EMGLGKTLQCISLLWTLL--RQSPDACPTVSKSIIVCPSSLVKNWDKEIKKWLGTRLNAM 290
Query: 1532 LQYVGSAQDRIALREQFDKHN-------VIITSYDVVRKDADYLGQLLWNYCILDEGHII 1584
G + IA F + V+I SY+ R A+ L I DEGH +
Sbjct: 291 PVDSGKREQIIACLNSFMADSKMRCAIPVLIISYETFRLYANILHSGDVGIVICDEGHRL 350
Query: 1585 KNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPL 1644
KNS++ A+ LK A R+++SGTPIQN++ + +SL +F+ PG LGT +F+ + +
Sbjct: 351 KNSENLTYQALSGLKCARRVLISGTPIQNDLLEYFSLVNFVNPGLLGTASEFRKKFENAI 410
Query: 1645 VAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQL 1704
+ RD+ S++D + G + + V ++RRT + LP K C S +Q
Sbjct: 411 LKGRDADASSEDQKKGEEKTKEMISLVEKCIIRRTSALLTKYLPVKYEHIICCKNSTLQE 470
Query: 1705 KLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLG 1764
LY K + + I V++ DKG A AS F + +L KLC+HP LV
Sbjct: 471 TLYNKLIECEKQNRI-----VEK--DKG------ATASALSF--ITHLKKLCNHPYLVYD 515
Query: 1765 D-KSPESLLCHLS-ELFPGS 1782
+ + P++ + +FP S
Sbjct: 516 EFQKPDNRFRNKCLSIFPES 535
>POMBASE|SPAC15A10.03c [details] [associations]
symbol:rad54 "DNA-dependent ATPase Rad54/Rhp54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006311
"meiotic gene conversion" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0015616 "DNA translocase activity"
evidence=ISO] [GO:0030491 "heteroduplex formation" evidence=ISO]
[GO:0033170 "protein-DNA loading ATPase activity" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC15A10.03c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0006338
GO:GO:0000724 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007131 GO:GO:0006311
GO:GO:0015616 HOGENOM:HOG000204521 GO:GO:0033170 GO:GO:0030491
KO:K10875 EMBL:Z29640 PIR:S41886 RefSeq:NP_594290.1
ProteinModelPortal:P41410 IntAct:P41410 STRING:P41410
EnsemblFungi:SPAC15A10.03c.1 GeneID:2542749 KEGG:spo:SPAC15A10.03c
OMA:LSEYFAL OrthoDB:EOG4T1MVP NextBio:20803794 Uniprot:P41410
Length = 852
Score = 375 (137.1 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 98/279 (35%), Positives = 153/279 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKL----HG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEE 1500
LR +Q EG+ +L ++ +G I+ D+MGLGKTLQ A++ + + + +
Sbjct: 264 LRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIALLWTLLKQSPQAGK-PT 322
Query: 1501 IHPSLIICPSTLVGHWAFEIEKFI--DVSLMSTLQYVGSAQDRI-ALREQFDKHN----- 1552
I ++I CPS+LV +WA E+ K++ D L S Q+ I AL++ H
Sbjct: 323 IEKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQWASVHGRQVTR 382
Query: 1553 -VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPI 1611
V+I SY+ +R ++L + DEGH +KNS S A+ +L R+ILSGTPI
Sbjct: 383 PVLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPI 442
Query: 1612 QNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQV 1671
QN++++ +SL +F PG LG+ ++F+ Y P++ RD+ + KD E G + L K V
Sbjct: 443 QNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLAELAKIV 502
Query: 1672 MPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKF 1710
F++RRT D + LP K +C+LS QL LY+ F
Sbjct: 503 NRFIIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLYKHF 541
Score = 43 (20.2 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 1733 EGNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
E N + + +A+ L K+C+HP L+
Sbjct: 546 EINKILRGTGSQPLKAIGLLKKICNHPDLL 575
Score = 41 (19.5 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 1244 PSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCV 1296
P+ K +L I+ + P + +V I P L L+P + + ++KCV
Sbjct: 232 PNKSLKDLLGIQKEKPPP---PPVAVV--IDPKLARILRPHQIEGVKFLYKCV 279
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 357 (130.7 bits), Expect = 1.7e-28, P = 1.7e-28
Identities = 100/299 (33%), Positives = 160/299 (53%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
+ LR YQ EG+NWLA ++ IL D+MGLGKT Q A+ +A R + + P
Sbjct: 46 IHLRPYQLEGVNWLAQCFHYQNGCILGDEMGLGKTCQTIAVFIY-LAGR-----LNDEGP 99
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSYDV 1560
LI+CP +++ +W E+E+ + + Y G ++R L++ + + V++T+Y++
Sbjct: 100 FLILCPLSVLSNWKEEMERCAPG--LCCVTYAGDKEERAHLQQDLKQESGFHVLLTTYEI 157
Query: 1561 VRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWS 1620
KDA +L W+ ++DE H +KN S + ++ + A RL+L+GTPIQN++ +L+S
Sbjct: 158 CLKDASFLKSFPWSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLLTGTPIQNSLQELYS 217
Query: 1621 LFDFLMPGFLGTER--QFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
L F+ P E F Y D + K++E+ A E L+K + PFLLRR
Sbjct: 218 LLSFVEPDLFSKEEVEDFVQRY-------EDIE---KESES---ASE-LYKLLQPFLLRR 263
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNV 1737
K EV ++LP+K Y +SA+Q K Y+ EIS + +E A K + NV
Sbjct: 264 VKAEVAAELPKKTEVVIYHGMSALQKKYYKAILMKDL--EISDAFE-NEMAKKVKLQNV 319
>UNIPROTKB|F1MSA4 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
UniGene:Bt.91076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 CTD:25788 KO:K10877 GO:GO:0015616
OMA:VCKRHGY EMBL:DAAA02039467 EMBL:DAAA02039466 IPI:IPI00825462
RefSeq:NP_001179884.1 Ensembl:ENSBTAT00000000833 GeneID:533414
KEGG:bta:533414 NextBio:20876031 Uniprot:F1MSA4
Length = 909
Score = 368 (134.6 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 107/345 (31%), Positives = 177/345 (51%)
Query: 1435 DYKLGTELKVTLRRYQQEGINWL-AFLKRFKLHG----ILCDDMGLGKTLQASAIVASDI 1489
D + L LR +Q+EGI +L + +++G IL D+MGLGKTLQ +++ + +
Sbjct: 285 DVVIDPHLVYYLRPHQKEGITFLYECVMGMRVNGRCGAILADEMGLGKTLQCISLIWT-L 343
Query: 1490 AERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD 1549
+ + +LI+ P +LV +W E +K++ + + QD E+F
Sbjct: 344 QCQGPYGGKPIVKKTLIVTPGSLVNNWKKEFQKWLGIERIKIFTV---DQDHKV--EEFT 398
Query: 1550 K---HNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLIL 1606
K ++V+I SY+++ + D + + ++ I DEGH +KNS K T A+ L R+IL
Sbjct: 399 KSPFYSVLIISYEMLLRSLDQIKNVKFDLLICDEGHRLKNSTIKTTTALISLSCEKRIIL 458
Query: 1607 SGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEA 1666
+GTP+QN++ + ++L DF+ PG LG+ ++ Y +P++ +R S ++ E G
Sbjct: 459 TGTPVQNDLQEFFTLIDFVNPGILGSLSAYRKIYEEPIIISRQPSASEEERELGEQRAAE 518
Query: 1667 LHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVD 1726
L F+LRRT++ + LP KI +C A+Q+ LY K SQA V+
Sbjct: 519 LTCLTGLFILRRTQEVINQYLPPKIENVVFCRPGALQIALYRKLLNSQA-------VRF- 570
Query: 1727 ESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGD-KSPES 1770
+G N S H+ + L KLC+HP L+ G K ES
Sbjct: 571 --CLQGLLENTS-----HLI-CIGALKKLCNHPCLLFGSIKEKES 607
Score = 47 (21.6 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 659 LAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQ 699
L E+ EE M+G +E ++ ++ DD GR FQ
Sbjct: 172 LKELEKIEEGQTMMIGG---KEIEVMGIISPDDFNSGRCFQ 209
Score = 45 (20.9 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 15/69 (21%), Positives = 32/69 (46%)
Query: 193 SHGNGFDRRFYTSASAH---NIQRLVSSMVPSV-ISKRPSARELNMLKRKAKI---SSKD 245
+HG+ + ++ AS ++ V S + +SK + +++K + + +SK
Sbjct: 77 NHGDNYREKYCLEASTKTTLDLHHTVHSAPKEITVSKGQEEKPDSLVKYFSVVWCKASKK 136
Query: 246 QSKSWSEDG 254
+ K W DG
Sbjct: 137 KHKKWEGDG 145
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 371 (135.7 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 93/304 (30%), Positives = 155/304 (50%)
Query: 1414 LSRNAEDAQFLEQLLDNSHIDDYKLGTE----LKV-TLRRYQQEGINWLAFLKRFKLHGI 1468
++ AED + + ++ + T +K T+R YQ G+NWL L ++GI
Sbjct: 239 ITEEAEDEAIMNETMEEEEPHSFNFFTSSPPYIKSGTMRDYQVYGLNWLIQLYERGINGI 298
Query: 1469 LCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSL 1528
L D+MGLGKTLQ +++ ++E + P LII P + + WA E ++
Sbjct: 299 LADEMGLGKTLQTISLLGY-LSEYKGIRG-----PHLIIAPKSTLSGWAKEFTRWCP--F 350
Query: 1529 MSTLQYVGSAQDRIALREQ---FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIK 1585
+ +++ GS ++R +++ F K +V IT+Y+V ++ + W Y I+DE H IK
Sbjct: 351 LRVVRFHGSKEEREDIKKNQLIFKKFDVCITTYEVAIREKSTFKKFSWRYIIIDEAHRIK 410
Query: 1586 NSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLV 1645
N S ++ V+ + RL+++GTP+QNN+ +LWSL +FL+P + F +
Sbjct: 411 NENSVLSKGVRMFNSQFRLLITGTPLQNNLHELWSLLNFLLPDVFSSSDDFDKWFDL--- 467
Query: 1646 AARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLK 1705
A + E ++ LHK + PFLLRR K EV LP K + LS +Q +
Sbjct: 468 --------ANNTENQQEVIDKLHKVLRPFLLRRIKTEVEKSLPPKKEIKLFVGLSTMQKE 519
Query: 1706 LYEK 1709
Y++
Sbjct: 520 WYKR 523
Score = 44 (20.5 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 28/127 (22%), Positives = 56/127 (44%)
Query: 360 TMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNISIKVDDSGCN 419
+M+ + E + + + +E + + EDAP P D V+ D +++ +G N
Sbjct: 62 SMENDNENEEDEVMEEEEVDDNEENGNDEDAPHPFFDD--DQVDDDE-DLNDPTIQNGIN 118
Query: 420 LPAGSVNGQLD-LSSVKVEPESNLDGLSHPSKEAIDILEP--RGQSGEKGDFLNSETLKN 476
+ + + L S+++E E L + ++ + LE R Q E + + LK
Sbjct: 119 RKDETEEARNERLESIRLEKE-RLKQIREQQRKQLQELEKNQRQQLQEDKEKSANARLKY 177
Query: 477 LPENSEL 483
L E +E+
Sbjct: 178 LLERTEI 184
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 375 (137.1 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
Identities = 100/295 (33%), Positives = 162/295 (54%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
++L+ YQ+ G+NWLA + + L+GIL D+MGLGKT+QA A +A E P
Sbjct: 497 LSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNKG-------P 549
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR----EQFDKHNVIITSYD 1559
LI+ P++ + +W E+ + + L Y GS ++R +R +++++NVI+T+Y+
Sbjct: 550 HLIVVPASTIDNWLREVNLWCPT--LKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYN 607
Query: 1560 VVRKDAD---YLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNIT 1616
+D +L NY I DEGH++KN S + + A +RL+L+GTP+QNN+
Sbjct: 608 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 667
Query: 1617 DLWSLFDFLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL-H-KQVM- 1672
+L SL +F+MP F + + + + SK D E + E + H KQ++
Sbjct: 668 ELMSLLNFVMPHMFSSSTSEIRRMFS--------SKTKPAD-EQSIYEKERIAHAKQIIK 718
Query: 1673 PFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
PF+LRR K+EVL LP K + C +S Q +LY ++ K+ I++M K E
Sbjct: 719 PFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYMNLF-NRLKKSINNMEKNTE 772
Score = 46 (21.3 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
Identities = 28/116 (24%), Positives = 48/116 (41%)
Query: 383 KKMKFEDAP---P-PLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEP 438
K+ K E+AP P P SP++ + + + S P V + + SSV P
Sbjct: 13 KRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRAGTPDSDVTEKTEDSSVPETP 72
Query: 439 ES----------NLDGLSHP--SKEAIDILEPRGQSGEKGDFLNSETLKNLPENSE 482
E+ N G+ + S ++ D++ P S + N +T+ + E SE
Sbjct: 73 ENDRKASISYFKNQRGIQYIDLSSDSEDVVSPNCSSTVQEKKFNKDTVIIVSEPSE 128
Score = 42 (19.8 bits), Expect = 5.7e-28, Sum P(3) = 5.7e-28
Identities = 17/74 (22%), Positives = 32/74 (43%)
Query: 432 SSVKVEPESNLDGL---SHPSKEAIDILEPRGQSGEKGDFLNSETLKNLPENSELMNWLK 488
SS E + N D + S PS++ P + D N + L P S+ ++ ++
Sbjct: 107 SSTVQEKKFNKDTVIIVSEPSEDEESQGLPTMATRNNNDITNLKNLSFFPNYSDNLSTVR 166
Query: 489 LARHSWQKNCEFLQ 502
R+S + + L+
Sbjct: 167 QTRYSENLSSDLLK 180
Score = 41 (19.5 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 1735 NNVSAKASTHVFQALQYLLKLCSHPLL 1761
NN+ + +T + + L K+ +HPLL
Sbjct: 765 NNM--EKNTEMCNVMMQLRKMANHPLL 789
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 395 (144.1 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
Identities = 98/280 (35%), Positives = 153/280 (54%)
Query: 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
L+ LR YQ G++WL + KL+GIL D+MGLGKT+Q +++A E+ N
Sbjct: 622 LRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEK--GNW---- 675
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSY 1558
P LII P++++ +W E++++ L Y G+ ++R R+ + K N V ITSY
Sbjct: 676 GPHLIIVPTSVMLNWEMELKRWCPS--FKILTYYGAQKERKLKRQGWTKPNAFHVCITSY 733
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
+V +D + W Y ILDE IKN KS+ ++ + RL+L+GTP+QN++ +L
Sbjct: 734 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMEL 793
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL FLMP + R+F+ + PL + +++ G++ + LHK + PFLLRR
Sbjct: 794 WSLMHFLMPHVFQSHREFKEWFSNPLTGMIEG---SQEYNEGLV--KRLHKVLRPFLLRR 848
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQE 1718
K +V +P+K C LS Q LY+ F +E
Sbjct: 849 VKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKE 888
Score = 47 (21.6 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 229 ARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDS 288
A E ++ S D ++ SED D E H++ T + S + S +++ +
Sbjct: 488 ATEAEEAPQEDSSSQSDSAEEQSEDEDEE--HSEEEETSESSESEESESEESEESQSQSQ 545
Query: 289 SEHE 292
++ E
Sbjct: 546 ADEE 549
Score = 46 (21.3 bits), Expect = 9.6e-26, Sum P(5) = 9.6e-26
Identities = 24/133 (18%), Positives = 55/133 (41%)
Query: 351 VEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNIS 410
V+FK + + KR++ +DL++ + E + + PL + C G + +
Sbjct: 213 VQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLS-QSLNQPLASSKAGSSPCLGSSSA 271
Query: 411 IKVDDS-GCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGE----K 465
G + +++G D + E E + + + ++ + E + + E +
Sbjct: 272 ASSPPPPGSRMDDEAIDG--DFQPQEEEEEDDEETIEVEEQQEGNDAETQRREIELLRRE 329
Query: 466 GDFLNSETLKNLP 478
G+ E L++LP
Sbjct: 330 GELPLEELLRSLP 342
Score = 40 (19.1 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 1745 VFQALQYLLKLCSHPLL 1761
V L L K+C+HP L
Sbjct: 898 VINILMQLRKVCNHPNL 914
Score = 40 (19.1 bits), Expect = 9.6e-26, Sum P(5) = 9.6e-26
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 996 QLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSE 1044
QL ++ + +E+ E+ +E L A ++AS GS S E
Sbjct: 423 QLEGEVDHAMELSELAREGELSMEELLQRYAGAYASDASAPGSGSSEEE 471
Score = 37 (18.1 bits), Expect = 9.6e-26, Sum P(5) = 9.6e-26
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 199 DRRFYTSASAHNIQRLVSSMVPSVISKRPSAR--ELNMLKRKAKISSKDQSKSWS 251
+RR+ A + R+V K AR E L+R A +KD + WS
Sbjct: 154 ERRWKRGV-ARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASAMAKDVRQFWS 207
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 355 (130.0 bits), Expect = 2.7e-28, P = 2.7e-28
Identities = 91/271 (33%), Positives = 151/271 (55%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIH 1502
+ LR YQ +G+NWL + + HG IL D+MGLGKT Q +++ ++ +N
Sbjct: 44 IKLRPYQLDGVNWLVQCYQVQ-HGCILGDEMGLGKTCQTISLLL--YLTKKLTNK----E 96
Query: 1503 PSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSYD 1559
SLI+CP +++ +W E+E+F +S + YVG+ ++R L++ + + V++T+Y+
Sbjct: 97 RSLILCPLSVLSNWKEELERFAPG--LSFVTYVGNKEERYKLQQNLKEQSHFRVLLTTYE 154
Query: 1560 VVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLW 1619
+ KDA +L W ++DE H +KN S + + +L L+L+GTPIQN++ +L+
Sbjct: 155 ICLKDAAFLKFFDWAALVVDEAHRLKNQNSLLYETLTELPVGFSLLLTGTPIQNSLQELY 214
Query: 1620 SLFDFLMPGFLGTE--RQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLR 1677
SL F+ P + ++F Y + K++E A E LH + PFLLR
Sbjct: 215 SLLSFIEPDIFPRKQVKEFVEYY----------QAVEKESEP---AKE-LHNLLQPFLLR 260
Query: 1678 RTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
R K EV +DLP+K+ Y +SA+Q K Y+
Sbjct: 261 RVKSEVTADLPKKVEVVLYHGMSALQRKYYK 291
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 372 (136.0 bits), Expect = 2.8e-28, Sum P(2) = 2.8e-28
Identities = 86/266 (32%), Positives = 148/266 (55%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ +++A + E R N P +
Sbjct: 194 LRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAY-LHEYRGING-----PHM 247
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF---DKHNVIITSYDVVR 1562
++ P + +G+W EI +F V + ++++G+ ++R +RE+ K ++ +TS+++
Sbjct: 248 VVAPKSTLGNWMNEIRRFCPV--LRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAI 305
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ L + W Y I+DE H IKN S ++ ++ +RL+++GTP+QNN+ +LW+L
Sbjct: 306 KEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALL 365
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + S ++ + V+ + LHK + PFLLRR K +
Sbjct: 366 NFLLPEVFSSAETFDEWF----------QISGENDQQEVV--QQLHKVLRPFLLRRLKSD 413
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYE 1708
V LP K +S +Q + Y+
Sbjct: 414 VEKGLPPKKETILKVGMSQMQKQYYK 439
Score = 40 (19.1 bits), Expect = 2.8e-28, Sum P(2) = 2.8e-28
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 1716 KQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLG 1764
KQ ++++ D G G K ++ A+Q L K C+HP L G
Sbjct: 435 KQYYKALLQKDLEVVNGGGER---KRLLNI--AMQ-LRKCCNHPYLFQG 477
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 395 (144.1 bits), Expect = 3.5e-28, Sum P(3) = 3.5e-28
Identities = 98/280 (35%), Positives = 153/280 (54%)
Query: 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
L+ LR YQ G++WL + KL+GIL D+MGLGKT+Q +++A E+ N
Sbjct: 621 LRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEK--GNW---- 674
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSY 1558
P LII P++++ +W E++++ L Y G+ ++R R+ + K N V ITSY
Sbjct: 675 GPHLIIVPTSVMLNWEMELKRWCPS--FKILTYYGAQKERKLKRQGWTKPNAFHVCITSY 732
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
+V +D + W Y ILDE IKN KS+ ++ + RL+L+GTP+QN++ +L
Sbjct: 733 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMEL 792
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL FLMP + R+F+ + PL + +++ G++ + LHK + PFLLRR
Sbjct: 793 WSLMHFLMPHVFQSHREFKEWFSNPLTGMIEG---SQEYNEGLV--KRLHKVLRPFLLRR 847
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQE 1718
K +V +P+K C LS Q LY+ F +E
Sbjct: 848 VKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKE 887
Score = 45 (20.9 bits), Expect = 3.5e-28, Sum P(3) = 3.5e-28
Identities = 27/157 (17%), Positives = 64/157 (40%)
Query: 139 QEYDIAIDNSKNPRERLARQKQNLKRRLGLDVCEQFVDLNDMIKDE-DLIVHKL-NSHGN 196
+E+ D +++ + +A ++Q L +V + V+LN++ ++ +L V +L +
Sbjct: 401 EEFTANEDEAEDEEDTIAAEEQ-----LEGEV-DPAVELNELAREGGELSVEELLQQYAG 454
Query: 197 GFDRRFYTSASAHNIQRLVSSMVPSVISKRPS-ARELNMLKRKAKISSKDQSKSWSEDGD 255
+ S + + + P A E + S D ++ SED +
Sbjct: 455 AYASDASAPGSGSSEEEEEDEVEADSSESEPEGAAEAEEAPHEDSSSQSDSAEEQSEDEE 514
Query: 256 MEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEHE 292
E H++ T + S + S +++ + ++ E
Sbjct: 515 DE--HSEEEETSRSSESEESESEESEESQSQSQADEE 549
Score = 44 (20.5 bits), Expect = 3.8e-25, Sum P(6) = 3.8e-25
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 1000 AMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIES 1056
A+E + + E E+ VE L A ++AS GS S E D ES
Sbjct: 430 AVELNELARE---GGELSVEELLQQYAGAYASDASAPGSGSSEEEEEDEVEADSSES 483
Score = 43 (20.2 bits), Expect = 3.8e-25, Sum P(6) = 3.8e-25
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 351 VEFKDKDSITMKREREIDLNVQVPADEPE 379
V+FK + + KR++ +DL++ + E
Sbjct: 213 VQFKQQSRLEEKRKKALDLHLDFIVGQTE 241
Score = 40 (19.1 bits), Expect = 3.5e-28, Sum P(3) = 3.5e-28
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 1745 VFQALQYLLKLCSHPLL 1761
V L L K+C+HP L
Sbjct: 897 VINILMQLRKVCNHPNL 913
Score = 40 (19.1 bits), Expect = 3.8e-25, Sum P(6) = 3.8e-25
Identities = 19/75 (25%), Positives = 30/75 (40%)
Query: 427 GQLDLSSV-KVEPESNLDGLSHPSKEAIDILEPRGQSGEKGDFLNSETLKNLPENSELMN 485
G+L L + + P L G S PS+ E+G+ S+ +K P S +
Sbjct: 329 GELPLEELLRSLPPQLLGGPSSPSRTPSSHDSDTQDGPEEGEEEPSQAMKVKPPPSSVTQ 388
Query: 486 WLKLARHSWQKNCEF 500
K H + + EF
Sbjct: 389 CNKQPWHPDEDDEEF 403
Score = 37 (18.1 bits), Expect = 3.8e-25, Sum P(6) = 3.8e-25
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 199 DRRFYTSASAHNIQRLVSSMVPSVISKRPSAR--ELNMLKRKAKISSKDQSKSWS 251
+RR+ A + R+V K AR E L+R A +KD + WS
Sbjct: 154 ERRWKRGV-ARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWS 207
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 353 (129.3 bits), Expect = 4.1e-28, P = 4.1e-28
Identities = 96/305 (31%), Positives = 158/305 (51%)
Query: 1413 GLSRNAEDAQF-LEQLLDNS--HIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGIL 1469
GLSR D E L+ +S I + + L +Q+EG+ ++ L + GIL
Sbjct: 103 GLSRAEFDYSGPYEPLMLSSIGEIPIIHVPASINCRLLEHQREGVKFMYNLYKNNHGGIL 162
Query: 1470 CDDMGLGKTLQASAIVASDIA-ERRASNS--IE-EIHPSLIICPSTLVGHWAFEIEKFID 1525
DDMGLGKT+Q A +A+ + A S +E + P LIICPS+++ +W E ++
Sbjct: 163 GDDMGLGKTIQTIAFLAAVYGKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFSRW-- 220
Query: 1526 VSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIK 1585
S Y GS +D I + + V++TS+D R L + W I DE H +K
Sbjct: 221 ASFFKVSVYHGSNRDMILEKLKARGVEVLVTSFDTFRIQGPVLSGINWEIVIADEAHRLK 280
Query: 1586 NSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLV 1645
N KSK+ A ++K R+ L+GT +QN I++L++LF+++ PG LGT F+ Y +PL
Sbjct: 281 NEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLK 340
Query: 1646 AARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPE-KIIQDRYCDLSAVQL 1704
+ + + + + L + ++LRRTK+E + L K +C +S +Q
Sbjct: 341 LGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTKEETIGHLMMGKEDNVVFCQMSQLQR 400
Query: 1705 KLYEK 1709
++Y++
Sbjct: 401 RVYQR 405
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 375 (137.1 bits), Expect = 4.4e-28, Sum P(3) = 4.4e-28
Identities = 100/295 (33%), Positives = 163/295 (55%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
++L+ YQ+ G+NWLA + + L+GIL D+MGLGKT+QA A +A E P
Sbjct: 495 LSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNKG-------P 547
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR----EQFDKHNVIITSYD 1559
LI+ P++ + +W E+ + + L Y GS ++R +R +++++NVI+T+Y+
Sbjct: 548 HLIVVPASTIDNWLREVNLWCPT--LKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
Query: 1560 VVRKDAD---YLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNIT 1616
+D +L NY I DEGH++KN S + + A +RL+L+GTP+QNN+
Sbjct: 606 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
Query: 1617 DLWSLFDFLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL-H-KQVM- 1672
+L SL +F+MP F + + + + SK + D E + E + H KQ++
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMFS--------SKTKSAD-EQSIYEKERIAHAKQIIK 716
Query: 1673 PFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
PF+LRR K+EVL LP K Q C +S Q +LY ++ K+ I+++ K E
Sbjct: 717 PFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLF-NRLKKSINNIEKSTE 770
Score = 46 (21.3 bits), Expect = 4.4e-28, Sum P(3) = 4.4e-28
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 1735 NNVSAKASTHVFQALQYLLKLCSHPLL 1761
NN+ + ST + + L K+ +HPLL
Sbjct: 763 NNI--EKSTEMCNVMMQLRKMANHPLL 787
Score = 38 (18.4 bits), Expect = 4.4e-28, Sum P(3) = 4.4e-28
Identities = 25/107 (23%), Positives = 43/107 (40%)
Query: 388 EDAPPPLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEPES------- 440
E AP P SP++ + +V +G P + + + SSV E+
Sbjct: 22 EAAPQPSQPGPSSPISLSAEEENAEVSRAGT--PDSDITEKTEDSSVPETTENERKASIS 79
Query: 441 ---NLDGLSHP--SKEAIDILEPRGQSGEKGDFLNSETLKNLPENSE 482
N G+ + S ++ DI+ P S + N +T+ + E SE
Sbjct: 80 YFKNQRGIQYIDLSSDSEDIVSPNCSSTVQEKKFNKDTVIIVSEPSE 126
>WB|WBGene00000803 [details] [associations]
symbol:csb-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0004427 "inorganic
diphosphatase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009650
GeneTree:ENSGT00590000083118 KO:K10841 EMBL:Z81089 PIR:T22595
RefSeq:NP_510607.2 ProteinModelPortal:Q93781 SMR:Q93781
EnsemblMetazoa:F53H4.1 GeneID:181674 KEGG:cel:CELE_F53H4.1
UCSC:F53H4.1 CTD:181674 WormBase:F53H4.1 HOGENOM:HOG000020742
InParanoid:Q93781 OMA:GDICNHP NextBio:914906 Uniprot:Q93781
Length = 957
Score = 377 (137.8 bits), Expect = 4.6e-28, Sum P(3) = 4.6e-28
Identities = 95/288 (32%), Positives = 149/288 (51%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L ++QQEG+ WL + GIL D+MGLGKT+Q+ + S R + +L
Sbjct: 194 LHKFQQEGVEWLQKKTDHRSGGILADEMGLGKTIQSVVFLRSIQETARTHYKTTGLDTAL 253
Query: 1506 IICPSTLVGHWAFEIEKFID---VSLM----STLQ---YVGSAQDRIALR-EQFDKHNVI 1554
I+C +++ W E+ ++ V L+ ST + YVGS ++ R +++ +I
Sbjct: 254 IVCHVSIIAQWIKELNQWFPKARVFLLHSHCSTGRQEDYVGSIFRKLQRRRKEYPDGAII 313
Query: 1555 ITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNN 1614
+T+Y + K + + LW ILDEGH I+N +K ++A+++L R IL+GTP QN
Sbjct: 314 LTTYSLFTKLKKPIVKHLWQVVILDEGHYIRNENTKCSIAMRKLMTTQRFILTGTPFQNR 373
Query: 1615 ITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPF 1674
+++ W L DF+ PG L F + + A + CS + A + ALH V P
Sbjct: 374 LSEFWKLVDFVHPGRLSDSATFHRNFTHIINAGANLNCSPEAAAKAYECLVALHIAVKPL 433
Query: 1675 LLRRTKD---EVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEI 1719
+LRR ++ EVL LPEK C+LS Q +LY ++ S EI
Sbjct: 434 ILRRLQEDHKEVLQ-LPEKQEIVLSCELSKRQRRLYMEYGNSHQVNEI 480
Score = 42 (19.8 bits), Expect = 4.6e-28, Sum P(3) = 4.6e-28
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 236 KRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKG-SCGDPFNSNKADAVLDEDSSEHEGD 294
++K++ S + E D E + KG G S+ D + +D+ +++
Sbjct: 81 RKKSRRSDSSEFVPSEESDDDEEYEVLEKSRKKGRKSGSSSRSSSDDFIESDDNEDYKSA 140
Query: 295 GL 296
GL
Sbjct: 141 GL 142
Score = 40 (19.1 bits), Expect = 7.3e-28, Sum P(3) = 7.3e-28
Identities = 17/64 (26%), Positives = 25/64 (39%)
Query: 227 PSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDE 286
P RE + R++ SS D + W + D E +N +P +S
Sbjct: 34 PKYREAAL--RRSNSSSSDFDEKWEPELDEE-DFCEN---DADVLAEPISSKSRKKSRRS 87
Query: 287 DSSE 290
DSSE
Sbjct: 88 DSSE 91
Score = 40 (19.1 bits), Expect = 7.3e-28, Sum P(3) = 7.3e-28
Identities = 28/113 (24%), Positives = 44/113 (38%)
Query: 143 IAIDNSKNPRERLARQKQNLKRRLGLDV-CEQFVDLNDMIK-DEDLIVHKLNSHGNGFDR 200
+ I++ P+ R A +++ D E +D D + D D++ ++S R
Sbjct: 26 VVIEDQNTPKYREAALRRSNSSSSDFDEKWEPELDEEDFCENDADVLAEPISSKSRKKSR 85
Query: 201 RFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSKSWSED 253
R S S S VPS S E+ RK S S+S S+D
Sbjct: 86 R---SDS--------SEFVPSEESDDDEEYEVLEKSRKKGRKSGSSSRSSSDD 127
Score = 38 (18.4 bits), Expect = 4.6e-28, Sum P(3) = 4.6e-28
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 1746 FQALQYLLKLCSHP 1759
F + +L +C+HP
Sbjct: 488 FVGINHLTNICNHP 501
>ZFIN|ZDB-GENE-040426-968 [details] [associations]
symbol:rad54l "RAD54-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA;ISS] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-968 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008094 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 CTD:8438
EMBL:BC046050 IPI:IPI00507004 RefSeq:NP_957438.1 UniGene:Dr.78565
PDB:1Z3I PDBsum:1Z3I ProteinModelPortal:Q7ZV09 SMR:Q7ZV09
STRING:Q7ZV09 GeneID:394119 KEGG:dre:394119 InParanoid:Q7ZV09
EvolutionaryTrace:Q7ZV09 NextBio:20815072 ArrayExpress:Q7ZV09
Uniprot:Q7ZV09
Length = 738
Score = 351 (128.6 bits), Expect = 4.6e-28, P = 4.6e-28
Identities = 105/334 (31%), Positives = 174/334 (52%)
Query: 1442 LKVTLRRYQQEGINWL---AFLKRFK-LHG-ILCDDMGLGKTLQASAIVASDIAERRASN 1496
L LR +Q+EG+ +L +R + +G I+ D+MGLGKTLQ ++ + + +++ +
Sbjct: 143 LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLL--KQSPD 200
Query: 1497 SIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR-EQFDKHN--- 1552
EI +++ PS+LV +W E+ K++ + + G ++D I + F
Sbjct: 201 CKPEIDKVIVVSPSSLVRNWYNEVGKWLG-GRVQPVAIDGGSKDEIDSKLVNFISQQGMR 259
Query: 1553 ----VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSG 1608
++I SY+ R A+ L + I DEGH +KNS ++ +A+ + A R+++SG
Sbjct: 260 IPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISG 319
Query: 1609 TPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH 1668
TPIQN++ + +SL F+ G LGT ++F+ + P++ RD+ S KD AG ++ L
Sbjct: 320 TPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELI 379
Query: 1669 KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES 1728
V L+RRT D + LP KI Q C+L+ +Q +LY+ F QAK ES
Sbjct: 380 SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFL-KQAKPV--------ES 430
Query: 1729 ADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
G K S ++ L KLC+HP L+
Sbjct: 431 LQTG-------KISVSSLSSITSLKKLCNHPALI 457
>UNIPROTKB|Q2NKX8 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0051301 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000236 GO:GO:0000777 CTD:54821 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OMA:TKNGDLE EMBL:EU069463 EMBL:BC008808
EMBL:BC111486 EMBL:AK000112 EMBL:AK074719 EMBL:AY121802
IPI:IPI00552569 RefSeq:NP_060139.2 UniGene:Hs.47558
ProteinModelPortal:Q2NKX8 SMR:Q2NKX8 IntAct:Q2NKX8 STRING:Q2NKX8
PhosphoSite:Q2NKX8 DMDM:121948339 PaxDb:Q2NKX8 PeptideAtlas:Q2NKX8
PRIDE:Q2NKX8 DNASU:54821 Ensembl:ENST00000334463 GeneID:54821
KEGG:hsa:54821 UCSC:uc004eap.1 GeneCards:GC0XM071424
H-InvDB:HIX0016867 HGNC:HGNC:20794 HPA:HPA050492 MIM:300687
neXtProt:NX_Q2NKX8 PharmGKB:PA162385290 InParanoid:Q2NKX8
GenomeRNAi:54821 NextBio:57573 ArrayExpress:Q2NKX8 Bgee:Q2NKX8
CleanEx:HS_ERCC6L Genevestigator:Q2NKX8 Uniprot:Q2NKX8
Length = 1250
Score = 367 (134.2 bits), Expect = 5.0e-28, Sum P(2) = 5.0e-28
Identities = 106/322 (32%), Positives = 165/322 (51%)
Query: 1397 LLPLARGVSPPTGLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGT----ELKVTLRRYQQE 1452
L LA+ + P + + + E + L + D+ D G EL L +Q+E
Sbjct: 43 LFNLAKDIFPNEKVLSRIQKIQEALEELAEQGDDEFTDVCNSGLLLYRELHNQLFEHQKE 102
Query: 1453 GINWLAFLKRF-KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST 1511
GI +L L R + GIL DDMGLGKT+Q A + S + + N + L+I P+
Sbjct: 103 GIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFL-SGMFDASLVNHV------LLIMPTN 155
Query: 1512 LVGHWAFEIEKFIDVSLMSTLQYVGSAQD-RIALREQFDKHN-VIITSYDVVRKD----A 1565
L+ W E K+ + T G ++D R + + N VIIT+Y ++ + +
Sbjct: 156 LINTWVKEFIKWTPGMRVKTFH--GPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLS 213
Query: 1566 DYLGQ-LLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDF 1624
+ GQ +W+Y ILDE H IK S +K + + + A++RL+L+GTPIQNN+ +LWSLFDF
Sbjct: 214 SFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDF 273
Query: 1625 LMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEV 1683
G LGT + F+ Y P+ AR+ + + G E L + P+ LRRTK++V
Sbjct: 274 ACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDV 333
Query: 1684 L---SDLPEKIIQDRYCDLSAV 1702
S PE + ++ D+ A+
Sbjct: 334 QKKKSSNPEARLNEKNPDVDAI 355
Score = 45 (20.9 bits), Expect = 5.0e-28, Sum P(2) = 5.0e-28
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 1698 DLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHV 1745
D A + KL E+ S S + + +++SAD + N S+++ HV
Sbjct: 930 DAQASEAKLEEEPSASSPQYACDFNLFLEDSADNRQ--NFSSQSLEHV 975
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 353 (129.3 bits), Expect = 6.0e-28, P = 6.0e-28
Identities = 90/268 (33%), Positives = 147/268 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ +++ R P +
Sbjct: 163 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG------PHM 216
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ SL + +G ++R A +R+ + +V +TSY+++
Sbjct: 217 VLVPKSTLYNWMNEFKRWVP-SLKAVC-LIGDREERTAFIRDTLLPGEWDVCVTSYEMLI 274
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
+ + W Y ++DE H IKN KSK++ V++ K +RL+L+GTP+QNN+ +LW+L
Sbjct: 275 IERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 334
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F A + D+ D + +E LH + PFLLRR K +
Sbjct: 335 NFLLPDVFNSSEDFDAWF--------DTNNCLGDTKL----VERLHTVLRPFLLRRIKAD 382
Query: 1683 V-LSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V S LP+K I+ Y LS +Q + Y K
Sbjct: 383 VEKSLLPKKEIKI-YVGLSKMQREWYTK 409
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 366 (133.9 bits), Expect = 7.2e-28, Sum P(2) = 7.2e-28
Identities = 103/318 (32%), Positives = 167/318 (52%)
Query: 1402 RGVSPPTGLTEGLSRNAEDAQFLEQLLDNSHIDDYK-LGTE----LKVTLRRYQQEGINW 1456
+G S G + G R E + E L D H + + E ++ T+R YQ G+NW
Sbjct: 137 KGASRQGGASSGRVRRTEAEEDAELLKDEKHGGSAETVFRESPAFIQGTMRDYQIAGLNW 196
Query: 1457 LAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHW 1516
L L + GIL D+MGLGKTLQ S + R I P L+I P + + +W
Sbjct: 197 LISLHENGISGILADEMGLGKTLQT----ISFLGYLRHIMGITG--PHLVIVPKSTLDNW 250
Query: 1517 AFEIEKFI-DVSLMSTLQYVGSAQDRIAL-REQF--DKHNVIITSYDVVRKDADYLGQLL 1572
E K+ +V+++ LQ G+ ++R AL E+ + +V ITSY+++ ++ +L +
Sbjct: 251 KREFGKWTPEVNVL-VLQ--GAKEERAALIAERLVDESFDVCITSYEMILREKSHLKKFA 307
Query: 1573 WNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGT 1632
W Y I+DE H IKN +S + ++ + +RL+++GTP+QNNI +LW+L +FL+P G
Sbjct: 308 WEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELWALLNFLLPDVFGD 367
Query: 1633 ERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEV-LSDLPEKI 1691
F + +D++ V + LH+ + PFLLRR K +V S LP+K
Sbjct: 368 SEAFDQWFSG----------EGQDSDTVV---QQLHRVLRPFLLRRVKADVEKSLLPKKE 414
Query: 1692 IQDRYCDLSAVQLKLYEK 1709
+ + Y ++ +Q Y+K
Sbjct: 415 V-NLYLKMTEMQRTWYQK 431
Score = 43 (20.2 bits), Expect = 7.2e-28, Sum P(2) = 7.2e-28
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 838 AAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNTRVVTASAL--GIF 895
+AK R ++E D + P + DT+ N+ +V DL + R A+ L IF
Sbjct: 24 SAKRRGDEMEVDET-----PDYTDSDTNPNTTASSVAGDLTVDGRKRRT-EANQLRRSIF 77
Query: 896 ASKLHE 901
K H+
Sbjct: 78 GRK-HD 82
Score = 38 (18.4 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 415 DSGCNLPAGSVNGQLDLSSVKVEPESN 441
D+ N A SV G L + K E+N
Sbjct: 44 DTNPNTTASSVAGDLTVDGRKRRTEAN 70
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 368 (134.6 bits), Expect = 8.5e-28, Sum P(2) = 8.5e-28
Identities = 88/268 (32%), Positives = 144/268 (53%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TLR YQ G+NW+ L ++GIL D+MGLGKTLQ A++ R P
Sbjct: 142 TLRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTIALLGYLKHYRNIPG------PH 195
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVV 1561
+++ P + + +W E ++++ + + +G+ +R A +R+ + +V +TSY++V
Sbjct: 196 MVLVPKSTLHNWMNEFKRWVPT--LKAVCLIGNKDERAAFIRDVMMPGEWDVCVTSYEMV 253
Query: 1562 RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSL 1621
++ + W Y ++DE H IKN KSK++ ++ K +RL+L+GTP+QNN+ +LWSL
Sbjct: 254 IREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELWSL 313
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P + F + + D+ C D + +E LH + PFLLRR K
Sbjct: 314 LNFLLPDVFNSASDFDSWF--------DTNCLG-DQKL----VERLHAVLRPFLLRRIKA 360
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
EV LP K Y LS +Q + Y +
Sbjct: 361 EVEKSLPPKKEVKIYLGLSKMQREWYTR 388
Score = 39 (18.8 bits), Expect = 8.5e-28, Sum P(2) = 8.5e-28
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 357 DSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNISIKVDDS 416
D+ + E+E D + + + + +L ++FE++P + + + G N I + ++
Sbjct: 103 DNRHRRTEQEEDEELLSESRKADNVL--VRFEESPSYIKNGTLRDYQIRGLNWMISLYEN 160
Query: 417 GCN 419
G N
Sbjct: 161 GIN 163
Score = 38 (18.4 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 979 PYAELSRTYGKMR---NEASQLLRAMETSSMFTEMLSANEIDVESLSADNAI 1027
P + L G+ R +E LL + TE E+ ES ADN +
Sbjct: 77 PTSPLKVKMGRPRIKQDEKQNLLSVGDNRHRRTEQEEDEELLSESRKADNVL 128
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 349 (127.9 bits), Expect = 1.2e-27, P = 1.2e-27
Identities = 92/270 (34%), Positives = 147/270 (54%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
+ LR YQ +G+NWLA + IL D+MGLGKT Q A+ +A R + + P
Sbjct: 46 IHLRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIY-LAGR-----LNDEGP 99
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE---QFDKHNVIITSYDV 1560
LI+CP +++ +W E+E+F +S + Y G R L++ Q + +V++T+Y++
Sbjct: 100 FLILCPLSVLSNWKEEMERFAPG--LSCVTYAGDKDKRACLQQDLKQESRFHVLLTTYEI 157
Query: 1561 VRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWS 1620
KDA +L W+ ++DE H +KN S + + + L+L+GTPIQN++ +L+S
Sbjct: 158 CLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYS 217
Query: 1621 LFDFLMPGFLGTER--QFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
L F+ P E+ F Y +D + K++E+ A E L+K + PFLLRR
Sbjct: 218 LLSFVEPDLFSKEQVEDFVQRY-------QDIE---KESES---ASE-LYKLLQPFLLRR 263
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
K EV ++LP K Y +SA+Q K Y+
Sbjct: 264 VKAEVATELPRKTEVVIYHGMSALQKKYYK 293
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 349 (127.9 bits), Expect = 1.2e-27, P = 1.2e-27
Identities = 92/270 (34%), Positives = 147/270 (54%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
+ LR YQ +G+NWLA + IL D+MGLGKT Q A+ +A R + + P
Sbjct: 46 IHLRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIY-LAGR-----LNDEGP 99
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE---QFDKHNVIITSYDV 1560
LI+CP +++ +W E+E+F +S + Y G R L++ Q + +V++T+Y++
Sbjct: 100 FLILCPLSVLSNWKEEMERFAPG--LSCVTYAGDKDKRACLQQDLKQESRFHVLLTTYEI 157
Query: 1561 VRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWS 1620
KDA +L W+ ++DE H +KN S + + + L+L+GTPIQN++ +L+S
Sbjct: 158 CLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYS 217
Query: 1621 LFDFLMPGFLGTER--QFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
L F+ P E+ F Y +D + K++E+ A E L+K + PFLLRR
Sbjct: 218 LLSFVEPDLFSKEQVEDFVQRY-------QDIE---KESES---ASE-LYKLLQPFLLRR 263
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
K EV ++LP K Y +SA+Q K Y+
Sbjct: 264 VKAEVATELPRKTEVVIYHGMSALQKKYYK 293
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 356 (130.4 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 93/299 (31%), Positives = 161/299 (53%)
Query: 1427 LLDNSH--IDDYKLGTELKVTLRRYQQEGINWL-AFLKRFKLHG----ILCDDMGLGKTL 1479
+ + +H I D + L LR +Q+EGI +L + +++G IL D+MGLGKTL
Sbjct: 171 MFNKNHFPIVDVVIDPHLVYHLRPHQREGIIFLYECVMGMRVNGRCGAILADEMGLGKTL 230
Query: 1480 QASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQ 1539
Q +++ + + + I +LI+ P +LV +W E +K++ + +
Sbjct: 231 QCISLIWT-LQCQGPYGGKPVIKKTLIVTPGSLVNNWRKEFQKWLGSERIKI--FTVDPD 287
Query: 1540 DRIALREQFDK---HNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK 1596
++ E+F K ++V+I SY+++ + D + + ++ I DEGH +KNS K T A+
Sbjct: 288 HKV---EEFTKSPLYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALF 344
Query: 1597 QLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKD 1656
L R+IL+GTP+QN++ + +SL DF+ PG LG+ ++ Y +P++ +R S ++
Sbjct: 345 SLPCEKRIILTGTPVQNDLQEFFSLIDFVNPGILGSLSCYRKIYEEPIITSRQPSASQEE 404
Query: 1657 AEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQA 1715
E G L F+LRRT++ + LP KI +C A+Q++LY K SQA
Sbjct: 405 KELGERRACELTCLTGLFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLNSQA 463
Score = 277 (102.6 bits), Expect = 3.4e-18, Sum P(3) = 3.4e-18
Identities = 73/220 (33%), Positives = 119/220 (54%)
Query: 1546 EQFDK---HNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAH 1602
E+F K ++V+I SY+++ + D + + ++ I DEGH +KNS K T A+ L
Sbjct: 291 EEFTKSPLYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALFSLPCEK 350
Query: 1603 RLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVL 1662
R+IL+GTP+QN++ + +SL DF+ PG LG+ ++ Y +P++ +R S ++ E G
Sbjct: 351 RIILTGTPVQNDLQEFFSLIDFVNPGILGSLSCYRKIYEEPIITSRQPSASQEEKELGER 410
Query: 1663 AMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSM 1722
L F+LRRT++ + LP KI +C A+Q++LY K SQA
Sbjct: 411 RACELTCLTGLFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLNSQA------- 463
Query: 1723 VKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
V+ +G N S+H+ + L KLC+HP L+
Sbjct: 464 VRF---CLQGLMEN-----SSHLI-CIGALKKLCNHPCLL 494
Score = 45 (20.9 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 661 EIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQ 699
E+ EE M+G +E ++ V+ DD GR FQ
Sbjct: 72 ELEKIEEGQTMMIGG---KEIEVMGVISPDDFSSGRCFQ 107
Score = 40 (19.1 bits), Expect = 3.4e-18, Sum P(3) = 3.4e-18
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 777 LQCSDRVWRLLVQSP 791
LQC +W L Q P
Sbjct: 230 LQCISLIWTLQCQGP 244
>UNIPROTKB|J9PA15 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
EMBL:AAEX03004382 EMBL:AAEX03004383 EMBL:AAEX03004384
EMBL:AAEX03004387 EMBL:AAEX03004388 Ensembl:ENSCAFT00000048702
Uniprot:J9PA15
Length = 1555
Score = 395 (144.1 bits), Expect = 1.5e-27, Sum P(5) = 1.5e-27
Identities = 98/280 (35%), Positives = 153/280 (54%)
Query: 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
L+ LR YQ G++WL + KL+GIL D+MGLGKT+Q +++A E+ N
Sbjct: 620 LRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEK--GNW---- 673
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSY 1558
P LII P++++ +W E++++ L Y G+ ++R R+ + K N V ITSY
Sbjct: 674 GPHLIIVPTSVMLNWEMELKRWCPS--FKILTYYGAQKERKLKRQGWTKPNAFHVCITSY 731
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
+V +D + W Y ILDE IKN KS+ ++ + RL+L+GTP+QN++ +L
Sbjct: 732 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMEL 791
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL FLMP + R+F+ + PL + +++ G++ + LHK + PFLLRR
Sbjct: 792 WSLMHFLMPHVFQSHREFKEWFSNPLTGMIEG---SQEYNEGLV--KRLHKVLRPFLLRR 846
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQE 1718
K +V +P+K C LS Q LY+ F +E
Sbjct: 847 VKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKE 886
Score = 45 (20.9 bits), Expect = 1.5e-27, Sum P(5) = 1.5e-27
Identities = 21/119 (17%), Positives = 48/119 (40%)
Query: 351 VEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNIS 410
V+FK + + KR++ +DL++ + E + + PL + C G + +
Sbjct: 213 VQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLS-QSLNQPLASSKAGSSPCLGSSSA 271
Query: 411 I--------KVDDSGCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQ 461
++DD + + D +++VE + + +E I++L G+
Sbjct: 272 ASSPPPPVSRLDDEDGDFQPQEEEEEDDEETIEVEEQQEGNDAETQRRE-IELLRREGE 329
Score = 40 (19.1 bits), Expect = 1.5e-27, Sum P(5) = 1.5e-27
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 1745 VFQALQYLLKLCSHPLL 1761
V L L K+C+HP L
Sbjct: 896 VINILMQLRKVCNHPNL 912
Score = 39 (18.8 bits), Expect = 1.5e-27, Sum P(5) = 1.5e-27
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 996 QLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSE 1044
QL ++ + +E+ E+ +E L A ++AS GS S E
Sbjct: 421 QLEGEVDHAMELSELAREGELSMEELLQQYAGAYASDASGPGSGSSEEE 469
Score = 37 (18.1 bits), Expect = 1.5e-27, Sum P(5) = 1.5e-27
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 199 DRRFYTSASAHNIQRLVSSMVPSVISKRPSAR--ELNMLKRKAKISSKDQSKSWS 251
+RR+ A + R+V K AR E L+R A +KD + WS
Sbjct: 154 ERRWKRGV-ARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWS 207
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 350 (128.3 bits), Expect = 1.8e-27, P = 1.8e-27
Identities = 103/310 (33%), Positives = 156/310 (50%)
Query: 1397 LLPLARGVSPPTGLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGT----ELKVTLRRYQQE 1452
L LA+ + P + + + E + L + D+ D G EL L +Q+E
Sbjct: 65 LFNLAKDIFPNEKVMSRIQKIQEALEELAEHGDDEFTDVCNSGLLLYRELHNQLFEHQKE 124
Query: 1453 GINWLAFLKRF-KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST 1511
G+ +L L R + GIL DDMGLGKT+Q A ++ S+ L+I P+
Sbjct: 125 GVAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDATLVSHV-------LLIMPTN 177
Query: 1512 LVGHWAFEIEKFIDVSLMSTLQYVGSAQD-RIALREQFDKHN-VIITSYDVVRKDADYLG 1569
L+ W E K+ + T GS++D R + + N VIIT+Y ++ + L
Sbjct: 178 LISTWIKEFVKWTPGMRVKTFH--GSSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLS 235
Query: 1570 QL-----LWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDF 1624
L +W+Y ILDE H IK S +K + + + A +R++L+GTPIQNN+ +LWSLFDF
Sbjct: 236 SLNGQEFVWDYVILDEAHKIKTSSTKSAICARAVPARNRILLTGTPIQNNLQELWSLFDF 295
Query: 1625 LMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEV 1683
G LGT + F+ Y P++ AR+ + + G+ E L + LRRTK+EV
Sbjct: 296 ACQGSLLGTLKTFKIEYENPIMRAREKDATPGEKALGLKISENLMAIIKSHFLRRTKEEV 355
Query: 1684 L--SDLPEKI 1691
S PE+I
Sbjct: 356 QKKSSTPEEI 365
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 362 (132.5 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 105/303 (34%), Positives = 159/303 (52%)
Query: 1412 EGLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRF-KLHGILC 1470
E L+ + ED +F + + NS + Y+ EL L YQ+EG+ +L L R + GIL
Sbjct: 46 EELAEHGED-EFTD--VCNSGLLLYR---ELHNQLFEYQKEGVAFLYSLYRDGRRGGILA 99
Query: 1471 DDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMS 1530
DDMGLGKT+Q A + S + + N + L+I P++L+ W E K+ +
Sbjct: 100 DDMGLGKTVQIIAFL-SGMFDASLVNHV------LLIMPTSLISTWLREFVKWTPGMRVK 152
Query: 1531 TLQYVGSAQD-RIALREQFDKHN-VIITSYDVVRKDADYLGQL-----LWNYCILDEGHI 1583
T G ++D R + + N VIIT+Y ++ + L L +W+Y ILDE H
Sbjct: 153 TFH--GPSKDERTRNLSRIQQRNGVIITTYQMLINNWQQLSSLNGREFVWDYVILDEAHK 210
Query: 1584 IKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPG-FLGTERQFQATYGK 1642
IK S +K + + + A +R++L+GTPIQNN+ +LWSLFDF G LGT + F+ Y
Sbjct: 211 IKTSSTKSAICARAIPARNRILLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYEN 270
Query: 1643 PLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVL---SDLPEKIIQDRYCDL 1699
P+ AR+ + + G E L + P+ LRRTK+EV S PE + + D
Sbjct: 271 PITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEEVQKKKSSNPEVRLSEEDPDA 330
Query: 1700 SAV 1702
A+
Sbjct: 331 DAI 333
Score = 44 (20.5 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 1698 DLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTH 1744
D ++KL E+ S A+ + +++SAD G N+S+++ H
Sbjct: 906 DAQVNEVKLEEEPLASSAQYTCDFNLFLEDSADNGP--NLSSQSVEH 950
>UNIPROTKB|F1NBD4 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AADN02012644 IPI:IPI00818904
Ensembl:ENSGALT00000016863 ArrayExpress:F1NBD4 Uniprot:F1NBD4
Length = 733
Score = 355 (130.0 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 114/354 (32%), Positives = 184/354 (51%)
Query: 1442 LKVTLRRYQQEGINWL---AFLKRFK-LHG-ILCDDMGLGKTLQASAIVASDIAERRASN 1496
L LR +Q+EG+ +L +R HG I+ D+MGLGKTLQ ++ + + R++ +
Sbjct: 138 LSRVLRPHQREGVKFLWDCVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLL--RQSPD 195
Query: 1497 SIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQ--DR--IALREQFDKH- 1551
EI ++++ PS+LV +W E+EK++ + GS + DR + Q
Sbjct: 196 CKPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQPLAIDGGSKEEIDRKLVGFMNQRGLRV 255
Query: 1552 --NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
++I SY+ R A+ L + I DEGH +KNS+++ A+ L R+++SGT
Sbjct: 256 PSPILIISYETFRLHAEALQKGSVGLVICDEGHRLKNSENQTYQALNSLNTPRRVLISGT 315
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
PIQN++ + +SL F+ G LGT ++F+ + P++ RD+ S + + G ++ L
Sbjct: 316 PIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQKGEERLKELIS 375
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESA 1729
V L+RRT D + LP KI Q C L+ +Q +LY+ F QAK V+E
Sbjct: 376 IVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQAELYKNFL-KQAKP-------VEELK 427
Query: 1730 DKGEGN-NVSAKASTHVFQALQYLLKLCSHPLLVLGD--KSPESLLCHLSELFP 1780
EG NVS+ +S + L KLC+HP L+ + E + L +LFP
Sbjct: 428 ---EGKINVSSLSS------ITSLKKLCNHPALIYDKCVEEEEGFMGAL-DLFP 471
Score = 42 (19.8 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 1231 LWDCLTEVLIP 1241
LWDC+T IP
Sbjct: 153 LWDCVTSRRIP 163
>UNIPROTKB|O12944 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
HOGENOM:HOG000204521 HOVERGEN:HBG058654 EMBL:U92461 IPI:IPI00588266
UniGene:Gga.3308 ProteinModelPortal:O12944 SMR:O12944 STRING:O12944
InParanoid:O12944 OrthoDB:EOG4D7Z53 Uniprot:O12944
Length = 733
Score = 355 (130.0 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 114/356 (32%), Positives = 186/356 (52%)
Query: 1442 LKVTLRRYQQEGINWL---AFLKRFK-LHG-ILCDDMGLGKTLQASAIVASDIAERRASN 1496
L LR +Q+EG+ +L +R HG I+ D+MGLGKTLQ ++ + + R++ +
Sbjct: 138 LSRVLRPHQREGVKFLWDCVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLL--RQSPD 195
Query: 1497 SIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---- 1552
EI ++++ PS+LV +W E+EK++ + L G +++ I R+ N
Sbjct: 196 CKPEIEKAMVVSPSSLVRNWYNEVEKWLG-GRIQPLAIDGGSKEEID-RKLVGSMNQRGL 253
Query: 1553 -----VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILS 1607
++I SY+ R A+ L + I DEGH +KNS+++ A+ L R+++S
Sbjct: 254 RVPSPILIISYETFRLHAEALQKGSVGLVICDEGHRLKNSENQTYQALNSLNTPRRVLIS 313
Query: 1608 GTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL 1667
GTPIQN++ + +SL F+ G LGT ++F+ + P++ RD+ S + + G ++ L
Sbjct: 314 GTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQKGEERLKEL 373
Query: 1668 HKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
V L+RRT D + LP KI Q C L+ +Q +LY+ F QAK V+E
Sbjct: 374 ISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQAELYKNFL-KQAKP-------VEE 425
Query: 1728 SADKGEGN-NVSAKASTHVFQALQYLLKLCSHPLLVLGD--KSPESLLCHLSELFP 1780
EG NVS+ +S + L KLC+HP L+ + E + L +LFP
Sbjct: 426 LK---EGKINVSSLSS------ITSLKKLCNHPALIYDKCVEEEEGFMGAL-DLFP 471
Score = 42 (19.8 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 1231 LWDCLTEVLIP 1241
LWDC+T IP
Sbjct: 153 LWDCVTSRRIP 163
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 375 (137.1 bits), Expect = 2.2e-27, Sum P(4) = 2.2e-27
Identities = 100/295 (33%), Positives = 163/295 (55%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
++L+ YQ+ G+NWLA + + L+GIL D+MGLGKT+QA A +A E P
Sbjct: 495 LSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNKG-------P 547
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR----EQFDKHNVIITSYD 1559
LI+ P++ + +W E+ + + L Y GS ++R +R +++++NVI+T+Y+
Sbjct: 548 HLIVVPASTIDNWLREVNLWCPT--LKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
Query: 1560 VVRKDAD---YLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNIT 1616
+D +L NY I DEGH++KN S + + A +RL+L+GTP+QNN+
Sbjct: 606 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
Query: 1617 DLWSLFDFLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL-H-KQVM- 1672
+L SL +F+MP F + + + + SK + D E + E + H KQ++
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMFS--------SKTKSAD-EQSIYEKERIAHAKQIIK 716
Query: 1673 PFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
PF+LRR K+EVL LP K Q C +S Q +LY ++ K+ I+++ K E
Sbjct: 717 PFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLF-NRLKKSINNIEKSTE 770
Score = 46 (21.3 bits), Expect = 2.2e-27, Sum P(4) = 2.2e-27
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 1735 NNVSAKASTHVFQALQYLLKLCSHPLL 1761
NN+ + ST + + L K+ +HPLL
Sbjct: 763 NNI--EKSTEMCNVMMQLRKMANHPLL 787
Score = 39 (18.8 bits), Expect = 2.2e-27, Sum P(4) = 2.2e-27
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 1409 GLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRY 1449
GL RN +D LE L +DD K G++++ R +
Sbjct: 130 GLPTMSGRNNDDISELEDLFT---VDDIK-GSKIRHLSREF 166
Score = 38 (18.4 bits), Expect = 2.2e-27, Sum P(4) = 2.2e-27
Identities = 25/107 (23%), Positives = 43/107 (40%)
Query: 388 EDAPPPLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEPES------- 440
E AP P SP++ + +V +G P + + + SSV E+
Sbjct: 20 EAAPQPSQPGPSSPISLSAEEENAEVSRAGT--PDSDITEKTEDSSVPETTENERKASIS 77
Query: 441 ---NLDGLSHP--SKEAIDILEPRGQSGEKGDFLNSETLKNLPENSE 482
N G+ + S ++ DI+ P S + N +T+ + E SE
Sbjct: 78 YFKNQRGIQYIDLSSDSEDIVSPNCSSTVQEKKFNKDTVIIVSEPSE 124
>UNIPROTKB|F1NX31 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00588266 OMA:TYQALMG
EMBL:AADN02012644 Ensembl:ENSGALT00000038354 ArrayExpress:F1NX31
Uniprot:F1NX31
Length = 742
Score = 355 (130.0 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 114/354 (32%), Positives = 184/354 (51%)
Query: 1442 LKVTLRRYQQEGINWL---AFLKRFK-LHG-ILCDDMGLGKTLQASAIVASDIAERRASN 1496
L LR +Q+EG+ +L +R HG I+ D+MGLGKTLQ ++ + + R++ +
Sbjct: 147 LSRVLRPHQREGVKFLWDCVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLL--RQSPD 204
Query: 1497 SIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQ--DR--IALREQFDKH- 1551
EI ++++ PS+LV +W E+EK++ + GS + DR + Q
Sbjct: 205 CKPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQPLAIDGGSKEEIDRKLVGFMNQRGLRV 264
Query: 1552 --NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
++I SY+ R A+ L + I DEGH +KNS+++ A+ L R+++SGT
Sbjct: 265 PSPILIISYETFRLHAEALQKGSVGLVICDEGHRLKNSENQTYQALNSLNTPRRVLISGT 324
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
PIQN++ + +SL F+ G LGT ++F+ + P++ RD+ S + + G ++ L
Sbjct: 325 PIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQKGEERLKELIS 384
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESA 1729
V L+RRT D + LP KI Q C L+ +Q +LY+ F QAK V+E
Sbjct: 385 IVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQAELYKNFL-KQAKP-------VEELK 436
Query: 1730 DKGEGN-NVSAKASTHVFQALQYLLKLCSHPLLVLGD--KSPESLLCHLSELFP 1780
EG NVS+ +S + L KLC+HP L+ + E + L +LFP
Sbjct: 437 ---EGKINVSSLSS------ITSLKKLCNHPALIYDKCVEEEEGFMGAL-DLFP 480
Score = 42 (19.8 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 1231 LWDCLTEVLIP 1241
LWDC+T IP
Sbjct: 162 LWDCVTSRRIP 172
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 366 (133.9 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 93/267 (34%), Positives = 147/267 (55%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ +G+NWL L KL GIL D+MGLGKTLQ S + R IE P L
Sbjct: 184 LRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQT----ISFLGYLRYVKQIEG--PFL 237
Query: 1506 IICPSTLVGHWAFEIEKFI-DVSLMSTLQYVGSAQD---RIALREQFDKHNVIITSYDVV 1561
II P + + +W E K+ +V+++ + D I L +FD V+ITSY++V
Sbjct: 238 IIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFD---VLITSYEMV 294
Query: 1562 RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSL 1621
++ + L +L W Y ++DE H IKN +S ++ ++ + +RL+++GTP+QNN+ +LW+L
Sbjct: 295 IREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWAL 354
Query: 1622 FDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKD 1681
+FL+P G F + + S +D E + ++ LH + PFLLRR K
Sbjct: 355 LNFLLPDIFGDSELFDEWF--------EQNNSEQDQE---IVIQQLHSVLNPFLLRRVKA 403
Query: 1682 EVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
+V L KI + Y ++ +Q++ Y+
Sbjct: 404 DVEKSLLPKIETNVYVGMTDMQIQWYK 430
Score = 38 (18.4 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 566 EIRHGSLLGIKYLVAVRQEMLHGLL 590
++R + G+ +L+++ + L G+L
Sbjct: 183 KLRDYQVQGLNWLISLHENKLSGIL 207
>DICTYBASE|DDB_G0288873 [details] [associations]
symbol:pich "polo-interacting checkpoint helicase"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0288873 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000125 RefSeq:XP_636560.1
EnsemblProtists:DDB0233442 GeneID:8626845 KEGG:ddi:DDB_G0288873
InParanoid:Q54IB7 OMA:DYGHEEE Uniprot:Q54IB7
Length = 1332
Score = 359 (131.4 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 88/261 (33%), Positives = 140/261 (53%)
Query: 1436 YKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRAS 1495
+K+ ++ L YQ++G+NWL L GIL DDMGLGKT+Q + + S
Sbjct: 383 FKMKDKIYDGLYWYQRDGVNWLWNLFCRHAGGILGDDMGLGKTMQICSFLNS-------M 435
Query: 1496 NSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVII 1555
+S I +L++ P L+ HW E +F L+ + + +L+ ++ +II
Sbjct: 436 HSQGHISHTLLVMPVGLIEHWLKEFNRFNPKYLVRVFHGNNTIERNKSLKRVMNEGGIII 495
Query: 1556 TSYDVVRKDADYL---GQ--LLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTP 1610
T+Y +V + D + G+ +W+Y ILDEGH IK +K++I+ + + A H++IL+GT
Sbjct: 496 TTYGMVVSNVDSMIENGRKSFIWDYVILDEGHKIKETKTQISKTMHRFNAKHKIILTGTA 555
Query: 1611 IQNNITDLWSLFDFLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
IQNN+ +LW+LFD++ LG+ R F A + KP++ A S S G E L
Sbjct: 556 IQNNLRELWALFDWVCGSTLLGSVRNFTANFSKPIIKAHTSDSSQDQKITGSAIAEDLRN 615
Query: 1670 QVMPFLLRRTKDEVL--SDLP 1688
+ P LRR K +V +D P
Sbjct: 616 IIAPHFLRREKKDVFKQNDQP 636
Score = 53 (23.7 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 18/93 (19%), Positives = 36/93 (38%)
Query: 203 YTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQ 262
Y+ I++ VS + I + + E + + +++ KS S + D++
Sbjct: 228 YSEEDIKPIKKPVSKVTKKQIQESEGSEE--EISDSEEDIKQEEEKSESSEEDIKPKRLT 285
Query: 263 NVTTPKGSCGDPFNSNKADAVLDEDSSEHEGDG 295
+ P + + K +L E E E DG
Sbjct: 286 RLRKPITTTLNTTTKKKPTLILSESEEEEESDG 318
Score = 46 (21.3 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 1748 ALQYLLKLCSHPLLVLGDKSPESL--LCHLSELFPGSSDIISELHKASSLSQI 1798
AL L K+C HP L+ + SL + L GSS I+ L S Q+
Sbjct: 758 ALTVLKKICDHPHLLREEMKMISLDEMKDLLSKVGGSSRSINSLVNNSGKFQL 810
Score = 41 (19.5 bits), Expect = 4.3e-26, Sum P(3) = 4.3e-26
Identities = 14/65 (21%), Positives = 32/65 (49%)
Query: 1001 METSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIESIKQR 1060
M++S + T S N+I + +I+ S+++ + + D E +++ S K++
Sbjct: 1 MKSSKITTTSTSINKIKPLPPNKSKSIANKSRIKKIDIDLDSEEESEEEII----SAKKK 56
Query: 1061 MLTTS 1065
TT+
Sbjct: 57 SSTTT 61
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 383 (139.9 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 97/295 (32%), Positives = 156/295 (52%)
Query: 1428 LDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVAS 1487
+D H+ K+ +K TLR YQ G++WL +L + ++GIL D+MGLGKTLQ +++ S
Sbjct: 646 MDEKHLT--KIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLL-S 702
Query: 1488 DIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQ 1547
+A P L+I P++++ +W E+++F L Y G+ +R R
Sbjct: 703 YLAYY-----FNIWGPHLVIVPTSILINWEIELKRFCPC--FKILSYYGNQNERYKKRVG 755
Query: 1548 F---DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRL 1604
+ D ++ I+SY V KD + W Y ILDE H IKN +K + LK + L
Sbjct: 756 WFNKDSFHICISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCL 815
Query: 1605 ILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPL-VAARDSKCS-AKDAEAGVL 1662
+++GTP+QN++ +LWSL FLMP + F+ + PL +A SK +K+
Sbjct: 816 LITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKEL----- 870
Query: 1663 AMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQ 1717
++ LH + P++LRR K V ++P K C L+ Q LY++F ++ Q
Sbjct: 871 -IDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQ 924
Score = 42 (19.8 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 26/112 (23%), Positives = 55/112 (49%)
Query: 152 RERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNI 211
++R +Q N K+ + ++FV + IK H N+H F+ + Y S S++N
Sbjct: 159 KKRELQQTLNKKKEMRF---KKFV--KEAIKKIKDARHN-NAH-ELFENK-YVSMSSNNN 210
Query: 212 QRLVSSMVPSVISKRPSARELNMLKRKAK-------ISSKDQSKSWSEDGDM 256
+V++ SV + +E ++ ++ + +SS D+S++ E+ +M
Sbjct: 211 SEIVNNNASSVDNGDKELKEDDLTDQEEEDYLLDEQMSSTDESENKEEEINM 262
Score = 40 (19.1 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 244 KDQSKSWSEDGDMEVPHAQNVTTPKGSCGD-PFNSNKADAVLDEDSSEHE 292
+D + + + GD + N + K + N N +D D++ HE
Sbjct: 383 EDDNNNDEKGGDNNIDENDNNSDHKSEDNNIDENDNNSDHQSDQEQFNHE 432
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 383 (139.9 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 97/295 (32%), Positives = 156/295 (52%)
Query: 1428 LDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVAS 1487
+D H+ K+ +K TLR YQ G++WL +L + ++GIL D+MGLGKTLQ +++ S
Sbjct: 646 MDEKHLT--KIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLL-S 702
Query: 1488 DIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQ 1547
+A P L+I P++++ +W E+++F L Y G+ +R R
Sbjct: 703 YLAYY-----FNIWGPHLVIVPTSILINWEIELKRFCPC--FKILSYYGNQNERYKKRVG 755
Query: 1548 F---DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRL 1604
+ D ++ I+SY V KD + W Y ILDE H IKN +K + LK + L
Sbjct: 756 WFNKDSFHICISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCL 815
Query: 1605 ILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPL-VAARDSKCS-AKDAEAGVL 1662
+++GTP+QN++ +LWSL FLMP + F+ + PL +A SK +K+
Sbjct: 816 LITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKEL----- 870
Query: 1663 AMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQ 1717
++ LH + P++LRR K V ++P K C L+ Q LY++F ++ Q
Sbjct: 871 -IDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQ 924
Score = 42 (19.8 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 26/112 (23%), Positives = 55/112 (49%)
Query: 152 RERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNI 211
++R +Q N K+ + ++FV + IK H N+H F+ + Y S S++N
Sbjct: 159 KKRELQQTLNKKKEMRF---KKFV--KEAIKKIKDARHN-NAH-ELFENK-YVSMSSNNN 210
Query: 212 QRLVSSMVPSVISKRPSARELNMLKRKAK-------ISSKDQSKSWSEDGDM 256
+V++ SV + +E ++ ++ + +SS D+S++ E+ +M
Sbjct: 211 SEIVNNNASSVDNGDKELKEDDLTDQEEEDYLLDEQMSSTDESENKEEEINM 262
Score = 40 (19.1 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 244 KDQSKSWSEDGDMEVPHAQNVTTPKGSCGD-PFNSNKADAVLDEDSSEHE 292
+D + + + GD + N + K + N N +D D++ HE
Sbjct: 383 EDDNNNDEKGGDNNIDENDNNSDHKSEDNNIDENDNNSDHQSDQEQFNHE 432
>UNIPROTKB|F1NYG8 [details] [associations]
symbol:F1NYG8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 EMBL:AADN02067869 EMBL:AADN02067866
EMBL:AADN02067867 EMBL:AADN02067868 IPI:IPI00682975
Ensembl:ENSGALT00000020603 OMA:PEINICL Uniprot:F1NYG8
Length = 879
Score = 345 (126.5 bits), Expect = 3.1e-27, P = 3.1e-27
Identities = 113/388 (29%), Positives = 191/388 (49%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS- 1504
LR YQ+EG +L + K IL DDMGLGKT+Q + +A+ + ++ IE P
Sbjct: 34 LRGYQREGAQFLYWHYANKRGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEF 93
Query: 1505 -----------------LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQ 1547
LI+ P +++ +W E++ + +S L GS ++ R +
Sbjct: 94 LQRTMKKESKCNPKKTFLIVAPLSVLYNWKDELDTW-GYFKVSVLH--GSKKEGDLNRIK 150
Query: 1548 FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILS 1607
K V +T+Y+ +R D L + W+ I+DE H IKN KS+IT +K LK R+ L+
Sbjct: 151 QGKCEVALTTYETLRLYLDELNNIGWSAVIVDEVHRIKNPKSQITQTMKSLKCNVRIGLT 210
Query: 1608 GTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL 1667
GT +QNN+ +LW + D+ +PG LG+ F+ + PL + + ++ G AM L
Sbjct: 211 GTILQNNMNELWCVMDWAVPGLLGSRVHFKKKFSDPLERGQRHTATKRELATGRKAMVKL 270
Query: 1668 HKQVMPFLLRRTKDEVLSDLPEKIIQDR--YCDLSAVQLKLYEKFSGSQAKQEISSMVKV 1725
+++ + LRRTK + LP+K +DR YC L+ Q +Y ++ ++S +++
Sbjct: 271 ARKMSSWFLRRTKVLISDQLPKK--EDRMVYCSLTEFQKAVYRAVLKTE---DVSLVLRA 325
Query: 1726 DESADKGEGN---NVSAKASTH--VFQALQ--YLL---KLCSHPLLVLGDKSPESLLCHL 1775
E G N K ++H ++LQ YL K+ +H L+ D + + H+
Sbjct: 326 REPCSCNSGRIRKNCCYKINSHGETVKSLQLSYLTILQKVANHVALLQTDNTSKQQETHI 385
Query: 1776 ----SELFPGSSDIISELHKASSLSQIS 1799
+E+F D + +L K ++ IS
Sbjct: 386 KRVCNEVFSSFPDFM-QLSKDAAFETIS 412
>MGI|MGI:894697 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 MGI:MGI:894697 GO:GO:0005524 GO:GO:0005634
GO:GO:0042493 GO:GO:0003677 GO:GO:0010212 GO:GO:0000724
GO:GO:0004386 GO:GO:0051276 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
GO:GO:0036310 UniGene:Mm.3655 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:X97796 EMBL:AK088876 EMBL:BC021643 IPI:IPI00404187
RefSeq:NP_001116430.1 RefSeq:NP_001116431.1 RefSeq:NP_033041.3
ProteinModelPortal:P70270 SMR:P70270 STRING:P70270
PhosphoSite:P70270 PRIDE:P70270 Ensembl:ENSMUST00000102704
Ensembl:ENSMUST00000102705 GeneID:19366 KEGG:mmu:19366
InParanoid:P70270 NextBio:296441 Bgee:P70270 CleanEx:MM_RAD54L
Genevestigator:P70270 GermOnline:ENSMUSG00000028702 Uniprot:P70270
Length = 747
Score = 357 (130.7 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 107/334 (32%), Positives = 172/334 (51%)
Query: 1442 LKVTLRRYQQEGINWL---AFLKRFK-LHG-ILCDDMGLGKTLQASAIVASDIAERRASN 1496
L LR +Q+EG+ +L +R HG I+ D+MGLGKTLQ ++ + + R++
Sbjct: 149 LSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLL--RQSPE 206
Query: 1497 SIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR-EQFDKHN--- 1552
EI ++++ PS+LV +W E+EK++ + L G ++D I + E F
Sbjct: 207 CKPEIEKAVVVSPSSLVKNWYNEVEKWLG-GRIQPLAIDGGSKDEIDRKLEGFMNQRGAR 265
Query: 1553 ----VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSG 1608
++I SY+ R L + I DEGH +KNS+++ A+ L + R+++SG
Sbjct: 266 VPSPILIISYETFRLHVGVLKKGNVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISG 325
Query: 1609 TPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH 1668
TPIQN++ + +SL F+ G LGT +F+ + P++ +RD+ S D + G + L
Sbjct: 326 TPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKSRDAAASEADRQRGEERLRELI 385
Query: 1669 KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES 1728
V L+RRT D + LP KI Q C L+ +Q +LY++F QAK E E
Sbjct: 386 GIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFL-RQAKPE--------EE 436
Query: 1729 ADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
+G K S ++ L KLC+HP L+
Sbjct: 437 LREG-------KMSVSSLSSITSLKKLCNHPALI 463
Score = 38 (18.4 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 1231 LWDCLTEVLIP 1241
LW+C+T IP
Sbjct: 164 LWECVTSRRIP 174
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 358 (131.1 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 99/294 (33%), Positives = 159/294 (54%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
+ L+ YQ+ G+NWLA L + K++ IL D+MGLGKT+QA A +A + P
Sbjct: 472 LVLKPYQKIGLNWLALLHKHKVNMILADEMGLGKTVQAIAFLAHLYVTGDSG-------P 524
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR-EQFDK---HNVIITSYD 1559
L++ P++ + +W E ++ M+ L Y GS ++R LR + +K NVI+T+Y+
Sbjct: 525 HLVVVPASTMDNWIREFNQWCPS--MNILLYYGSQEERKHLRYDILNKVVEFNVIVTTYN 582
Query: 1560 VV---RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNIT 1616
+D +L N+ + DEGH++KN + + L A RL+L+GTP+QNN+
Sbjct: 583 CAISSAEDRSLFRRLKLNFAVFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLL 642
Query: 1617 DLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL-H-KQVM-P 1673
+L SL +F+MP F ++ + + SK + D E + E + H KQ+M P
Sbjct: 643 ELMSLLNFVMP------HMFSSSTSE-IKRLFSSKAKSTD-EQTIFEKERIAHAKQIMKP 694
Query: 1674 FLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDE 1727
F+LRR K EVL LP K + ++C +S Q +LY ++ K+ I + K E
Sbjct: 695 FILRRVKSEVLKQLPPKQDKIKFCQMSKKQEQLYSDLL-NKLKKSIDATEKNSE 747
Score = 42 (19.8 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 257 EVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEHEGDGLWPFRSFVEQ 305
E P A+ V P F +K + LD DS + F S +Q
Sbjct: 46 ETPEAKRVNNPS-----LFKKDKGVSFLDSDSENEDHQSKSKFSSTHQQ 89
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 360 (131.8 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 91/268 (33%), Positives = 150/268 (55%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
+ LR YQ EG+NWLA + IL D+MGLGKT Q A+ +A R + + P
Sbjct: 46 IRLRSYQLEGVNWLARCFHCQNGCILGDEMGLGKTCQTIALFIY-LAGR-----LNDEGP 99
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE---QFDKHNVIITSYDV 1560
LI+CP +++ +W E+E+F +S + Y G ++R L++ Q + +V++T+Y++
Sbjct: 100 FLILCPLSVLSNWTEEMERFAPG--LSCVMYAGDKEERARLQQDLKQESRFHVLLTTYEI 157
Query: 1561 VRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWS 1620
KD+ +L W+ ++DE H +KN S + + + L+L+GTPIQN++ +L+S
Sbjct: 158 CLKDSSFLKSFPWSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSLLLTGTPIQNSLQELYS 217
Query: 1621 LFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTK 1680
L F+ P E+ G + +D + K++++ A E LHK + PFLLRR K
Sbjct: 218 LLSFVEPDLFPKEQ-----VGDFVQRYQDIE---KESDS---ASE-LHKLLQPFLLRRVK 265
Query: 1681 DEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
EV ++LP+K Y +SA+Q K Y+
Sbjct: 266 AEVATELPKKTEVVLYHGMSALQKKYYK 293
Score = 38 (18.4 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 1703 QLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
++ LY S Q K + ++K D A + E AK + L L K HP L
Sbjct: 277 EVVLYHGMSALQKKYYKAILMK-DLDAFESE----MAK-KVKLQNVLSQLRKCVDHPYLF 330
Query: 1763 LGDKSP 1768
G+ P
Sbjct: 331 EGETVP 336
>UNIPROTKB|F6XHF3 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
Ensembl:ENSCAFT00000026363 EMBL:AAEX03004382 EMBL:AAEX03004383
EMBL:AAEX03004384 EMBL:AAEX03004387 EMBL:AAEX03004388
Uniprot:F6XHF3
Length = 1823
Score = 395 (144.1 bits), Expect = 4.4e-27, Sum P(5) = 4.4e-27
Identities = 98/280 (35%), Positives = 153/280 (54%)
Query: 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
L+ LR YQ G++WL + KL+GIL D+MGLGKT+Q +++A E+ N
Sbjct: 620 LRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEK--GNW---- 673
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSY 1558
P LII P++++ +W E++++ L Y G+ ++R R+ + K N V ITSY
Sbjct: 674 GPHLIIVPTSVMLNWEMELKRWCPS--FKILTYYGAQKERKLKRQGWTKPNAFHVCITSY 731
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
+V +D + W Y ILDE IKN KS+ ++ + RL+L+GTP+QN++ +L
Sbjct: 732 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMEL 791
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL FLMP + R+F+ + PL + +++ G++ + LHK + PFLLRR
Sbjct: 792 WSLMHFLMPHVFQSHREFKEWFSNPLTGMIEG---SQEYNEGLV--KRLHKVLRPFLLRR 846
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQE 1718
K +V +P+K C LS Q LY+ F +E
Sbjct: 847 VKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKE 886
Score = 45 (20.9 bits), Expect = 4.4e-27, Sum P(5) = 4.4e-27
Identities = 21/119 (17%), Positives = 48/119 (40%)
Query: 351 VEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNIS 410
V+FK + + KR++ +DL++ + E + + PL + C G + +
Sbjct: 213 VQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLS-QSLNQPLASSKAGSSPCLGSSSA 271
Query: 411 I--------KVDDSGCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQ 461
++DD + + D +++VE + + +E I++L G+
Sbjct: 272 ASSPPPPVSRLDDEDGDFQPQEEEEEDDEETIEVEEQQEGNDAETQRRE-IELLRREGE 329
Score = 40 (19.1 bits), Expect = 4.4e-27, Sum P(5) = 4.4e-27
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 1745 VFQALQYLLKLCSHPLL 1761
V L L K+C+HP L
Sbjct: 896 VINILMQLRKVCNHPNL 912
Score = 39 (18.8 bits), Expect = 4.4e-27, Sum P(5) = 4.4e-27
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 996 QLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSE 1044
QL ++ + +E+ E+ +E L A ++AS GS S E
Sbjct: 421 QLEGEVDHAMELSELAREGELSMEELLQQYAGAYASDASGPGSGSSEEE 469
Score = 37 (18.1 bits), Expect = 4.4e-27, Sum P(5) = 4.4e-27
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 199 DRRFYTSASAHNIQRLVSSMVPSVISKRPSAR--ELNMLKRKAKISSKDQSKSWS 251
+RR+ A + R+V K AR E L+R A +KD + WS
Sbjct: 154 ERRWKRGV-ARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWS 207
>UNIPROTKB|E2R6G6 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 Ensembl:ENSCAFT00000026363
Uniprot:E2R6G6
Length = 1825
Score = 395 (144.1 bits), Expect = 4.5e-27, Sum P(5) = 4.5e-27
Identities = 98/280 (35%), Positives = 153/280 (54%)
Query: 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
L+ LR YQ G++WL + KL+GIL D+MGLGKT+Q +++A E+ N
Sbjct: 620 LRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEK--GNW---- 673
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSY 1558
P LII P++++ +W E++++ L Y G+ ++R R+ + K N V ITSY
Sbjct: 674 GPHLIIVPTSVMLNWEMELKRWCPS--FKILTYYGAQKERKLKRQGWTKPNAFHVCITSY 731
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
+V +D + W Y ILDE IKN KS+ ++ + RL+L+GTP+QN++ +L
Sbjct: 732 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMEL 791
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL FLMP + R+F+ + PL + +++ G++ + LHK + PFLLRR
Sbjct: 792 WSLMHFLMPHVFQSHREFKEWFSNPLTGMIEG---SQEYNEGLV--KRLHKVLRPFLLRR 846
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQE 1718
K +V +P+K C LS Q LY+ F +E
Sbjct: 847 VKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKE 886
Score = 45 (20.9 bits), Expect = 4.5e-27, Sum P(5) = 4.5e-27
Identities = 21/119 (17%), Positives = 48/119 (40%)
Query: 351 VEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNIS 410
V+FK + + KR++ +DL++ + E + + PL + C G + +
Sbjct: 213 VQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLS-QSLNQPLASSKAGSSPCLGSSSA 271
Query: 411 I--------KVDDSGCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQ 461
++DD + + D +++VE + + +E I++L G+
Sbjct: 272 ASSPPPPVSRLDDEDGDFQPQEEEEEDDEETIEVEEQQEGNDAETQRRE-IELLRREGE 329
Score = 40 (19.1 bits), Expect = 4.5e-27, Sum P(5) = 4.5e-27
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 1745 VFQALQYLLKLCSHPLL 1761
V L L K+C+HP L
Sbjct: 896 VINILMQLRKVCNHPNL 912
Score = 39 (18.8 bits), Expect = 4.5e-27, Sum P(5) = 4.5e-27
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 996 QLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSE 1044
QL ++ + +E+ E+ +E L A ++AS GS S E
Sbjct: 421 QLEGEVDHAMELSELAREGELSMEELLQQYAGAYASDASGPGSGSSEEE 469
Score = 37 (18.1 bits), Expect = 4.5e-27, Sum P(5) = 4.5e-27
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 199 DRRFYTSASAHNIQRLVSSMVPSVISKRPSAR--ELNMLKRKAKISSKDQSKSWS 251
+RR+ A + R+V K AR E L+R A +KD + WS
Sbjct: 154 ERRWKRGV-ARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWS 207
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 354 (129.7 bits), Expect = 5.1e-27, Sum P(2) = 5.1e-27
Identities = 97/278 (34%), Positives = 148/278 (53%)
Query: 1438 LGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNS 1497
L + LK L+ YQ G+ WL L + KL GIL D+MGLGKT+QA A +A + E+
Sbjct: 442 LNSNLK--LQAYQLIGLKWLILLHQHKLSGILADEMGLGKTIQAIAFLAH-LYEKGIKG- 497
Query: 1498 IEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF----DKHNV 1553
P LI PS+ + +W E+ + SL L Y GS +DR LR+ N+
Sbjct: 498 -----PHLITVPSSTLDNWVRELGLWCP-SL-KVLIYYGSVEDRKYLRQDILTGLIDFNI 550
Query: 1554 IITSYDV-VRKDAD--YLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTP 1610
I+++Y++ + D D +L Y + DEGH++KN S + + A HRL+L+GTP
Sbjct: 551 IVSTYNLTIGNDHDRSLFRKLKLKYAVFDEGHMLKNMNSLRYRHLMTINAEHRLLLTGTP 610
Query: 1611 IQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQ 1670
+QNN+ +L SL +F+MP + Q + + + R S+ + + + + K
Sbjct: 611 LQNNLLELMSLLNFIMPSMFSSSTS-QIS---KMFSTRSSEEESSFHKDRIAQARLIMK- 665
Query: 1671 VMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
PF+LRR K EVL +LP K+ + C +S Q KLY+
Sbjct: 666 --PFILRRVKSEVLKELPPKMEKIEMCPMSDAQHKLYD 701
Score = 46 (21.3 bits), Expect = 4.8e-26, Sum P(3) = 4.8e-26
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 236 KRKAKISSKDQSKSWSEDGDME 257
K+K KI D S+S ED + E
Sbjct: 145 KKKRKIQRSDSSESEDEDSEDE 166
Score = 45 (20.9 bits), Expect = 5.1e-27, Sum P(2) = 5.1e-27
Identities = 44/174 (25%), Positives = 72/174 (41%)
Query: 135 ASGGQEYDIAIDNSKNP-RERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNS 193
+S ++ D + S+ P RE+ + LKR+L D+ E+ V L D++K+ D N+
Sbjct: 155 SSESEDEDSEDEESEEPSREKQEALLKKLKRKLP-DI-EKEV-LRDILKEHDWDYE--NA 209
Query: 194 HGNGFDRRFYTSASAHNI---QRLVSSMVPSV---ISKRPSARELNMLKRKAKISSKDQS 247
G+ ++S N Q+ SS I++RPS + L R +S
Sbjct: 210 LGSLLVFSSTDTSSPENQKSKQKSKSSHSKEKTDKITQRPSGS--SSLSRWLTAASSHVP 267
Query: 248 KSWSEDGDMEVPHAQNVTTPKGSC-----GDPFNSNKADAVLDEDSSEHEGDGL 296
+ S A + +T K S GD N A DED + + D +
Sbjct: 268 EVSSMSALKTQKSALSKSTSKNSSFKRKRGDEMPLNDVSASEDEDEIDSDVDSM 321
Score = 45 (20.9 bits), Expect = 6.1e-26, Sum P(3) = 6.1e-26
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 1014 NEIDVESLSADNAISFASKLQLLGSNSDG---SESLSRQMLDDIES 1056
N + + S D + S Q +DG S SRQ+L+D+ S
Sbjct: 15 NAVGIHRKSPDGSNSDKENKQAHQRKADGQFPSGKTSRQVLEDVSS 60
Score = 39 (18.8 bits), Expect = 4.8e-26, Sum P(3) = 4.8e-26
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1162 AMGSMEIIDDQDFLSFGSSTGKQKSRA 1188
A+GS+ + D S + KQKS++
Sbjct: 209 ALGSLLVFSSTDTSSPENQKSKQKSKS 235
>UNIPROTKB|E1BFL2 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:DAAA02062232 EMBL:DAAA02062233 EMBL:DAAA02062234
EMBL:DAAA02062235 IPI:IPI00733931 Ensembl:ENSBTAT00000046144
Uniprot:E1BFL2
Length = 1482
Score = 364 (133.2 bits), Expect = 5.5e-27, Sum P(4) = 5.5e-27
Identities = 79/221 (35%), Positives = 125/221 (56%)
Query: 1499 EEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGS---AQDRIALREQFDKHNVII 1555
E + P++I+CP+T++ W E + ++ L GS ++++ +R+ H ++I
Sbjct: 555 EGLGPTIIVCPTTVMHQWVKEFHTWWPAFRVAVLHETGSFTHKKEKL-VRDIARCHGILI 613
Query: 1556 TSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNI 1615
TSY +R D + + W+Y ILDEGH I+N + +T+A KQ + HR+ILSG+P+QNN+
Sbjct: 614 TSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNL 673
Query: 1616 TDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675
+LWSLFDF+ PG LGT F + P+ S S + L + P+L
Sbjct: 674 RELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYL 733
Query: 1676 LRRTKDEV-LS-DLPEKIIQDRYCDLSAVQLKLYEKFSGSQ 1714
LRR K +V +S LP+K Q +C L+ Q K+Y+ F S+
Sbjct: 734 LRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSK 774
Score = 49 (22.3 bits), Expect = 5.5e-27, Sum P(4) = 5.5e-27
Identities = 19/93 (20%), Positives = 42/93 (45%)
Query: 166 LGLDVCEQFVDLNDMIKDEDLIVHKLN----------SHGNGFDRRFYTSASAHNIQRLV 215
LG+DV +Q V +++ D +H+ + + + D + S I +++
Sbjct: 95 LGVDVYDQDVLEQGVLQQVDSAIHEASCVAQLAEAEKEYRSVLDDLTSCTTSLRQIDKII 154
Query: 216 SSMVPSVISKRPSARELNMLKRKAKISSKDQSK 248
+ P + + R+L+ +KR+ K + + Q K
Sbjct: 155 EQLGPQAATNKDINRKLDSVKRQ-KYNKEQQLK 186
Score = 48 (22.0 bits), Expect = 5.5e-27, Sum P(4) = 5.5e-27
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 1745 VFQALQYLLKLCSHPLLVLGDKSPESL 1771
+F L L K+C+HP L G P++L
Sbjct: 786 IFSGLVALRKICNHPDLFSG--GPKNL 810
Score = 44 (20.5 bits), Expect = 5.5e-27, Sum P(4) = 5.5e-27
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 680 EFDLNEVVRADDVGEGRDFQ 699
E +L E V AD GEG D++
Sbjct: 380 EEELEETVGADLPGEGSDWE 399
Score = 43 (20.2 bits), Expect = 7.9e-27, Sum P(3) = 7.9e-27
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 153 ERLARQKQNLKRRLGLDVCEQFVDLNDMIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQ 212
+RL +Q + L++R L + Q V L K D V N+ G+ D + ++
Sbjct: 328 KRLKKQIKKLQKR-ALQLQGQ-VGLLKGKKPWDCDVRP-NAQGDSEDEESEYLPTEEELE 384
Query: 213 RLVSSMVPSVISKRPSARELNMLKRKAKISSKD 245
V + +P S LN KR+ K++ ++
Sbjct: 385 ETVGADLPGEGSDWEQRLVLNRRKRQKKVTVQE 417
>UNIPROTKB|B4MX21 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7260 "Drosophila willistoni" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH963857 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002065674.1 STRING:B4MX21 EnsemblMetazoa:FBtr0246224
GeneID:6642593 KEGG:dwi:Dwil_GK15573 FlyBase:FBgn0217578
InParanoid:B4MX21 Uniprot:B4MX21
Length = 784
Score = 341 (125.1 bits), Expect = 6.5e-27, P = 6.5e-27
Identities = 107/329 (32%), Positives = 164/329 (49%)
Query: 1446 LRRYQQEGINWLAFL---KRFKLHG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
LR +Q+EG+ ++ K+ +G I+ D+MGLGKTLQ +V + + R++ I
Sbjct: 153 LRPHQREGVRFMYDCVEGKKGNFNGCIMADEMGLGKTLQCVTLVWTLL--RQSCECKPTI 210
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN-------VI 1554
++I+ PS+LV +W E K++ + GS +D I EQF + V+
Sbjct: 211 TKAIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTIKALEQFSMNTSTRLGTPVL 270
Query: 1555 ITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNN 1614
+ SY+ R A+ L Q I DEGH +KNS + A+ LK R++LSGTPIQN+
Sbjct: 271 LISYETFRIYANILCQNEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQND 330
Query: 1615 ITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPF 1674
+T+ +SL +F+ P LGT F+ + P++ +++ S K+ E + + L V
Sbjct: 331 LTEYFSLVNFVNPEMLGTAADFKRNFENPILKGQNTDSSDKERERALEKTQELIGLVNQC 390
Query: 1675 LLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES-ADKGE 1733
++RRT + LP K L++VQL+ Y F S KV S AD E
Sbjct: 391 IIRRTNQILTKYLPVKFEMVICVRLTSVQLEFYTNFLKSD---------KVRRSLADCNE 441
Query: 1734 GNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
KAS + L KLCSHP L+
Sbjct: 442 ------KASLTALADITTLKKLCSHPDLI 464
>UNIPROTKB|Q9Y620 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006312 "mitotic recombination"
evidence=TAS] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0003724 "RNA helicase activity" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0006312 GO:GO:0007131
GO:GO:0003724 EMBL:AC023632 UniGene:Hs.30561 UniGene:Hs.657457
GeneID:25788 KEGG:hsa:25788 CTD:25788 KO:K10877 NextBio:46945
GO:GO:0015616 HOGENOM:HOG000204521 HOVERGEN:HBG058654
OrthoDB:EOG4SBDX5 EMBL:AF112481 EMBL:AL523600 EMBL:AP003534
EMBL:BC001965 IPI:IPI00018281 IPI:IPI00797041 RefSeq:NP_001192192.1
RefSeq:NP_036547.1 ProteinModelPortal:Q9Y620 SMR:Q9Y620
IntAct:Q9Y620 MINT:MINT-1441930 STRING:Q9Y620 PhosphoSite:Q9Y620
DMDM:51316548 PaxDb:Q9Y620 PRIDE:Q9Y620 Ensembl:ENST00000297592
Ensembl:ENST00000336148 UCSC:uc003ygk.3 GeneCards:GC08M095384
HGNC:HGNC:17228 HPA:HPA007087 MIM:604289 neXtProt:NX_Q9Y620
PharmGKB:PA134927202 InParanoid:Q9Y620 OMA:VCKRHGY PhylomeDB:Q9Y620
ChiTaRS:RAD54B GenomeRNAi:25788 ArrayExpress:Q9Y620 Bgee:Q9Y620
CleanEx:HS_RAD54B Genevestigator:Q9Y620 GermOnline:ENSG00000197275
Uniprot:Q9Y620
Length = 910
Score = 356 (130.4 bits), Expect = 7.9e-27, Sum P(2) = 7.9e-27
Identities = 107/342 (31%), Positives = 176/342 (51%)
Query: 1446 LRRYQQEGINWL-AFLKRFKLHG----ILCDDMGLGKTLQASAIVASDIAERRASNSIEE 1500
LR +Q+EGI +L + +++G IL D+MGLGKTLQ +++ + + +
Sbjct: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWT-LQCQGPYGGKPV 354
Query: 1501 IHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDK---HNVIITS 1557
I +LI+ P +LV +W E +K++ ++ QD E+F K ++V+I S
Sbjct: 355 IKKTLIVTPGSLVNNWKKEFQKWLG---SERIKIFTVDQDHKV--EEFIKSIFYSVLIIS 409
Query: 1558 YDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITD 1617
Y+++ + D + + ++ I DEGH +KNS K T A+ L R+IL+GTPIQN++ +
Sbjct: 410 YEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQE 469
Query: 1618 LWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLR 1677
++L DF+ PG LG+ ++ Y +P++ +R+ S ++ E G L F+LR
Sbjct: 470 FFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILR 529
Query: 1678 RTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNV 1737
RT++ + LP KI +C A+Q++LY K SQ V +G N
Sbjct: 530 RTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQ----------VVRFCLQGLLEN- 578
Query: 1738 SAKASTHVFQALQYLLKLCSHPLLVLGD-KSPE-SLLCHLSE 1777
S H+ + L KLC+HP L+ K E S C +E
Sbjct: 579 ----SPHLI-CIGALKKLCNHPCLLFNSIKEKECSSTCDKNE 615
Score = 40 (19.1 bits), Expect = 7.9e-27, Sum P(2) = 7.9e-27
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 679 QEFDLNEVVRADDVGEGRDFQ 699
+E ++ V+ DD GR FQ
Sbjct: 189 KEIEVMGVISPDDFSSGRCFQ 209
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 361 (132.1 bits), Expect = 8.2e-27, Sum P(2) = 8.2e-27
Identities = 87/267 (32%), Positives = 143/267 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ +++ R P +
Sbjct: 179 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG------PHM 232
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E +K++ + ++ +G + R A +R+ + +V +TSY+++
Sbjct: 233 VLVPKSTLHNWMSEFKKWVPT--LRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLI 290
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K +RL+L+GTP+QNN+ +LWSL
Sbjct: 291 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 350
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+ D + +E LH + PFLLRR K +
Sbjct: 351 NFLLPDVFNSADDFDSWF--------DTNNCLGDQKL----VERLHMVLRPFLLRRIKAD 398
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y +
Sbjct: 399 VEKSLPPKKEVKIYVGLSKMQREWYTR 425
Score = 37 (18.1 bits), Expect = 8.2e-27, Sum P(2) = 8.2e-27
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 564 EW-EIRHGSLLGIKYLVAVRQEMLHGLL 590
+W ++R + G+ +L+++ + ++G+L
Sbjct: 175 KWGKLRDYQVRGLNWLISLYENGINGIL 202
>UNIPROTKB|A1L4Z4 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:DAAA02009002 EMBL:BT029781 IPI:IPI00691258
RefSeq:NP_001124238.1 UniGene:Bt.106758 SMR:A1L4Z4 STRING:A1L4Z4
Ensembl:ENSBTAT00000026513 GeneID:100140639 KEGG:bta:100140639
InParanoid:A1L4Z4 NextBio:20790996 Uniprot:A1L4Z4
Length = 749
Score = 353 (129.3 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 105/334 (31%), Positives = 173/334 (51%)
Query: 1442 LKVTLRRYQQEGINWL---AFLKRFK-LHG-ILCDDMGLGKTLQASAIVASDIAERRASN 1496
L LR +Q+EG+ +L +R HG I+ D+MGLGKTLQ ++ + + R++ +
Sbjct: 150 LSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLL--RQSPD 207
Query: 1497 SIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR-EQFDKHN--- 1552
EI ++++ PS+LV +W E+ K++ + L G ++D I + E F
Sbjct: 208 CKPEIDKAVVVSPSSLVRNWYNEVGKWLG-GRIQPLAIDGGSKDEIDQKLEGFMNQRGAR 266
Query: 1553 ----VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSG 1608
++I SY+ R L + I DEGH +KNS+++ A+ L + R+++SG
Sbjct: 267 VPSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISG 326
Query: 1609 TPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH 1668
TPIQN++ + +SL F+ G LGT ++F+ + P++ RD+ S +D G + L
Sbjct: 327 TPIQNDLLEYFSLVHFVNSGILGTAQEFKKHFELPILKGRDAAASEEDRRVGEERLRELT 386
Query: 1669 KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES 1728
V L+RRT D + LP KI Q C L+ +Q++LY++F QAK +
Sbjct: 387 SIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQIELYKRFL-RQAKP----------A 435
Query: 1729 ADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
+ EG K S ++ L KLC+HP L+
Sbjct: 436 EELREG-----KMSVSSLSSITSLKKLCNHPALI 464
Score = 38 (18.4 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 1231 LWDCLTEVLIP 1241
LW+C+T IP
Sbjct: 165 LWECVTSRRIP 175
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 340 (124.7 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 84/268 (31%), Positives = 140/268 (52%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
+ LR YQ EG+NWL + IL D+MGLGKT Q A++ + + + P
Sbjct: 38 IRLRSYQLEGVNWLVQCFHCQNGCILGDEMGLGKTCQTIALLIYLVGR------LNDEGP 91
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSYDV 1560
L++CP +++ +W E+E+F +S + Y G ++R L++ + + V++T+Y++
Sbjct: 92 FLVLCPLSVLSNWKEEMERFAPG--LSCVTYTGDKEERARLQQDLRQESGFHVLLTTYEI 149
Query: 1561 VRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWS 1620
KDA +L W+ +DE H +KN S + + + A RL+L+GTPIQN++ +L+S
Sbjct: 150 CLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSLRELYS 209
Query: 1621 LFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTK 1680
L + P E+ D +D E + LH+ + PFLLRR K
Sbjct: 210 LLCVVEPDLFCREQ------------VEDFVQRYQDIEKESKSASELHRLLQPFLLRRVK 257
Query: 1681 DEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
+V ++LP+K Y +SA+Q K Y+
Sbjct: 258 AQVATELPKKTEVVVYHGMSALQKKYYK 285
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 343 (125.8 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 89/275 (32%), Positives = 149/275 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR +Q GINW+AFL +GIL D+MGLGKT+Q A ++ I RR + P +
Sbjct: 376 LRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNG------PHI 429
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE-QFD-----------KHNV 1553
I+ P + + W EK+ ++ + Y+G+ + R +RE +F K NV
Sbjct: 430 IVVPLSTMPAWLDTFEKWAPD--LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNV 487
Query: 1554 IITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQN 1613
++T+Y+ + KD LG + W + +DE H +KN++S + ++ K A+R++++GTP+QN
Sbjct: 488 LLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQN 547
Query: 1614 NITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMP 1673
NI +L +L +FLMPG +++ D + ++ E + LH+++ P
Sbjct: 548 NIKELAALVNFLMPGRFTIDQEI------------DFENQDEEQEEYI---HDLHRRIQP 592
Query: 1674 FLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
F+LRR K +V LP K + +LS VQ + Y+
Sbjct: 593 FILRRLKKDVEKSLPSKTERILRVELSDVQTEYYK 627
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 357 (130.7 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 91/286 (31%), Positives = 153/286 (53%)
Query: 1426 QLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIV 1485
+L +N + + LG + LR YQ +G+ WL+ + + IL D+MGLGKT Q +++
Sbjct: 19 ELTEND-LKKWGLGA---IHLRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTISLL 74
Query: 1486 ASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR 1545
A A S++ P L++CP ++ +W E+E+F SL S + Y G + R L+
Sbjct: 75 AY------ARGSLKMNGPFLVLCPLAVLENWRQELERFCP-SL-SVICYTGDKEKRAELQ 126
Query: 1546 EQFD---KHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAH 1602
+ + +V++T+Y++ KDA YL W ++DE H +KN +S + +K+
Sbjct: 127 QNLKSDPRFHVLLTTYEMCLKDARYLKSWKWKILVVDEAHRLKNQESLLHQTLKEFTVGF 186
Query: 1603 RLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVL 1662
R++L+GTPIQNN+ +++SL F+ P E A D + D +
Sbjct: 187 RVLLTGTPIQNNLQEVYSLLTFIQPSVFLPE------------AVEDFVNAYADIQTEPA 234
Query: 1663 AMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
++ LH+ + PFLLRR K EV ++LP+K + LSA+Q + Y+
Sbjct: 235 LVDELHQVLQPFLLRRVKAEVAAELPKKTELVVFHGLSALQKRYYK 280
Score = 39 (18.8 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 1727 ESADKGEGNNVSAKASTHVFQALQYLLKLCSHP 1759
E + E ++VS ++ A++Y+L +HP
Sbjct: 688 EDMEPDEDDHVSFSSTDSDHTAIRYVLGDVTHP 720
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 358 (131.1 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 86/267 (32%), Positives = 143/267 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ +++ R P +
Sbjct: 180 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG------PHM 233
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ + ++ +G + R A +R+ + +V +TSY+++
Sbjct: 234 VLVPKSTLHNWMSEFKRWVPT--LRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLI 291
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K +RL+L+GTP+QNN+ +LWSL
Sbjct: 292 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 351
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+ D + +E LH + PFLLRR K +
Sbjct: 352 NFLLPDVFNSADDFDSWF--------DTNNCLGDQKL----VERLHMVLRPFLLRRIKAD 399
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y +
Sbjct: 400 VEKSLPPKKEVKIYVGLSKMQREWYTR 426
Score = 51 (23.0 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 29/97 (29%), Positives = 37/97 (38%)
Query: 391 PPPLMDTMVSPVN---CDGCNISIKVDDSGCNLPAG-SVNGQLDLSSVKVEPESNLDGLS 446
PPP P + C G N S K G +PA S G S E E D S
Sbjct: 10 PPPPESAPSKPASSAACSGSNNSNKGGPEGFGVPAAPSAAGAGPTDS---EMEEVFDDAS 66
Query: 447 HPSKEAIDILEPRGQSGEKGDFLNSETLKNLPENSEL 483
P K+ +I EP EK + + L + +EL
Sbjct: 67 -PGKQK-EIQEPDPTYEEKMQTDRANRFEYLLKQTEL 101
Score = 37 (18.1 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 564 EW-EIRHGSLLGIKYLVAVRQEMLHGLL 590
+W ++R + G+ +L+++ + ++G+L
Sbjct: 176 KWGKLRDYQVRGLNWLISLYENGINGIL 203
>CGD|CAL0001568 [details] [associations]
symbol:RAD54 species:5476 "Candida albicans" [GO:0007067
"mitosis" evidence=IMP] [GO:0000085 "G2 phase of mitotic cell
cycle" evidence=IMP] [GO:0006997 "nucleus organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0015616 "DNA
translocase activity" evidence=IEA] [GO:0032392 "DNA geometric
change" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0032079 "positive regulation of endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001568 GO:GO:0005524
GO:GO:0007067 GO:GO:0003677 GO:GO:0000085 GO:GO:0004386
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006997
KO:K10875 RefSeq:XP_722208.1 RefSeq:XP_722322.1
ProteinModelPortal:Q5AKX3 STRING:Q5AKX3 GeneID:3636027
GeneID:3636192 KEGG:cal:CaO19.12471 KEGG:cal:CaO19.5004
Uniprot:Q5AKX3
Length = 848
Score = 355 (130.0 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
Identities = 106/328 (32%), Positives = 169/328 (51%)
Query: 1413 GLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWL----AFLKRFKLHG- 1467
G+ N E+ L + D + D KL K+ LR +Q G+ +L A L + G
Sbjct: 229 GIVTNPEEK--LSKYPDVPVVIDPKLA---KI-LRPHQIAGVKFLYRCTAGLIDARAKGC 282
Query: 1468 ILCDDMGLGKTLQASAIVASDIAER-RASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDV 1526
I+ D+MGLGKTLQ ++ + + + R +IE+ +I+CPS+LV +WA EI K++
Sbjct: 283 IMADEMGLGKTLQCLTLMWTLLRQSPRGKRTIEKC---IIVCPSSLVRNWANEIVKWLGE 339
Query: 1527 SLMSTLQYVGSAQDRIALR---EQFDK---HNVI----ITSYDVVRKDADYLGQLLWNYC 1576
++ L G + L +Q+ N++ I SY+ +R++ D L
Sbjct: 340 GALTPLAVDGKSTKNSELGTALQQWSTAQGRNIVRPVLIISYETLRRNVDKLAGTEVGLM 399
Query: 1577 ILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQF 1636
+ DEGH +KN S A+ L+ R+ILSGTPIQN++++ +SL +F PG+LGT +F
Sbjct: 400 LADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRIEF 459
Query: 1637 QATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRY 1696
+ Y ++ RDS S ++ E G + L + V F++RRT D + LP K +
Sbjct: 460 KKNYENAILKGRDSTASDEEREKGDKKLNELSQMVSKFIIRRTNDILSKYLPIKYEYVLF 519
Query: 1697 CDLSAVQLKLYEKFSGSQAKQEISSMVK 1724
LS +Q +Y F S EI ++K
Sbjct: 520 TGLSPMQKDIYNHFITSP---EIKKLMK 544
Score = 44 (20.5 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 355 DKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPV 402
+ D+I K E + + VP D+ K+ + + PPP + T V +
Sbjct: 116 NSDNIA-KNEDKFKRSFTVPFDKNNS--KQTEIQRGPPPPLGTKVRAI 160
Score = 41 (19.5 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 1747 QALQYLLKLCSHPLLV 1762
+A+ L KLC+HP L+
Sbjct: 552 KAIGMLKKLCNHPDLL 567
Score = 41 (19.5 bits), Expect = 3.2e-26, Sum P(3) = 3.2e-26
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 337 GVFMPE--LGPDGALNVEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPL 394
G +P + D E K K S T+ ++ ++ P PL K++ P L
Sbjct: 107 GALLPRSIINSDNIAKNEDKFKRSFTVPFDKNNSKQTEIQRGPPPPLGTKVRAILPPRAL 166
Query: 395 MD 396
D
Sbjct: 167 HD 168
>UNIPROTKB|Q5AKX3 [details] [associations]
symbol:RAD54 "Putative uncharacterized protein RAD54"
species:237561 "Candida albicans SC5314" [GO:0000085 "G2 phase of
mitotic cell cycle" evidence=IMP] [GO:0006997 "nucleus
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001568 GO:GO:0005524 GO:GO:0007067
GO:GO:0003677 GO:GO:0000085 GO:GO:0004386 EMBL:AACQ01000010
EMBL:AACQ01000009 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006997 KO:K10875 RefSeq:XP_722208.1
RefSeq:XP_722322.1 ProteinModelPortal:Q5AKX3 STRING:Q5AKX3
GeneID:3636027 GeneID:3636192 KEGG:cal:CaO19.12471
KEGG:cal:CaO19.5004 Uniprot:Q5AKX3
Length = 848
Score = 355 (130.0 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
Identities = 106/328 (32%), Positives = 169/328 (51%)
Query: 1413 GLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWL----AFLKRFKLHG- 1467
G+ N E+ L + D + D KL K+ LR +Q G+ +L A L + G
Sbjct: 229 GIVTNPEEK--LSKYPDVPVVIDPKLA---KI-LRPHQIAGVKFLYRCTAGLIDARAKGC 282
Query: 1468 ILCDDMGLGKTLQASAIVASDIAER-RASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDV 1526
I+ D+MGLGKTLQ ++ + + + R +IE+ +I+CPS+LV +WA EI K++
Sbjct: 283 IMADEMGLGKTLQCLTLMWTLLRQSPRGKRTIEKC---IIVCPSSLVRNWANEIVKWLGE 339
Query: 1527 SLMSTLQYVGSAQDRIALR---EQFDK---HNVI----ITSYDVVRKDADYLGQLLWNYC 1576
++ L G + L +Q+ N++ I SY+ +R++ D L
Sbjct: 340 GALTPLAVDGKSTKNSELGTALQQWSTAQGRNIVRPVLIISYETLRRNVDKLAGTEVGLM 399
Query: 1577 ILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQF 1636
+ DEGH +KN S A+ L+ R+ILSGTPIQN++++ +SL +F PG+LGT +F
Sbjct: 400 LADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRIEF 459
Query: 1637 QATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRY 1696
+ Y ++ RDS S ++ E G + L + V F++RRT D + LP K +
Sbjct: 460 KKNYENAILKGRDSTASDEEREKGDKKLNELSQMVSKFIIRRTNDILSKYLPIKYEYVLF 519
Query: 1697 CDLSAVQLKLYEKFSGSQAKQEISSMVK 1724
LS +Q +Y F S EI ++K
Sbjct: 520 TGLSPMQKDIYNHFITSP---EIKKLMK 544
Score = 44 (20.5 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 355 DKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPV 402
+ D+I K E + + VP D+ K+ + + PPP + T V +
Sbjct: 116 NSDNIA-KNEDKFKRSFTVPFDKNNS--KQTEIQRGPPPPLGTKVRAI 160
Score = 41 (19.5 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 1747 QALQYLLKLCSHPLLV 1762
+A+ L KLC+HP L+
Sbjct: 552 KAIGMLKKLCNHPDLL 567
Score = 41 (19.5 bits), Expect = 3.2e-26, Sum P(3) = 3.2e-26
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 337 GVFMPE--LGPDGALNVEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPL 394
G +P + D E K K S T+ ++ ++ P PL K++ P L
Sbjct: 107 GALLPRSIINSDNIAKNEDKFKRSFTVPFDKNNSKQTEIQRGPPPPLGTKVRAILPPRAL 166
Query: 395 MD 396
D
Sbjct: 167 HD 168
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 358 (131.1 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 86/267 (32%), Positives = 143/267 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ +++ R P +
Sbjct: 179 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG------PHM 232
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ + ++ +G + R A +R+ + +V +TSY+++
Sbjct: 233 VLVPKSTLHNWMSEFKRWVPT--LRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLI 290
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K +RL+L+GTP+QNN+ +LWSL
Sbjct: 291 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 350
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+ D + +E LH + PFLLRR K +
Sbjct: 351 NFLLPDVFNSADDFDSWF--------DTNNCLGDQKL----VERLHMVLRPFLLRRIKAD 398
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y +
Sbjct: 399 VEKSLPPKKEVKIYVGLSKMQREWYTR 425
Score = 37 (18.1 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 564 EW-EIRHGSLLGIKYLVAVRQEMLHGLL 590
+W ++R + G+ +L+++ + ++G+L
Sbjct: 175 KWGKLRDYQVRGLNWLISLYENGINGIL 202
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 358 (131.1 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 86/267 (32%), Positives = 143/267 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ +++ R P +
Sbjct: 180 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG------PHM 233
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ + ++ +G + R A +R+ + +V +TSY+++
Sbjct: 234 VLVPKSTLHNWMSEFKRWVPT--LRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLI 291
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K +RL+L+GTP+QNN+ +LWSL
Sbjct: 292 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 351
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+ D + +E LH + PFLLRR K +
Sbjct: 352 NFLLPDVFNSADDFDSWF--------DTNNCLGDQKL----VERLHMVLRPFLLRRIKAD 399
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y +
Sbjct: 400 VEKSLPPKKEVKIYVGLSKMQREWYTR 426
Score = 37 (18.1 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 564 EW-EIRHGSLLGIKYLVAVRQEMLHGLL 590
+W ++R + G+ +L+++ + ++G+L
Sbjct: 176 KWGKLRDYQVRGLNWLISLYENGINGIL 203
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 358 (131.1 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 86/267 (32%), Positives = 143/267 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ +++ R P +
Sbjct: 180 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG------PHM 233
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ + ++ +G + R A +R+ + +V +TSY+++
Sbjct: 234 VLVPKSTLHNWMSEFKRWVPT--LRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLI 291
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K +RL+L+GTP+QNN+ +LWSL
Sbjct: 292 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 351
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+ D + +E LH + PFLLRR K +
Sbjct: 352 NFLLPDVFNSADDFDSWF--------DTNNCLGDQKL----VERLHMVLRPFLLRRIKAD 399
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y +
Sbjct: 400 VEKSLPPKKEVKIYVGLSKMQREWYTR 426
Score = 37 (18.1 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 564 EW-EIRHGSLLGIKYLVAVRQEMLHGLL 590
+W ++R + G+ +L+++ + ++G+L
Sbjct: 176 KWGKLRDYQVRGLNWLISLYENGINGIL 203
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 358 (131.1 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 86/267 (32%), Positives = 143/267 (53%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ +++ R P +
Sbjct: 180 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG------PHM 233
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ + ++ +G + R A +R+ + +V +TSY+++
Sbjct: 234 VLVPKSTLHNWMSEFKRWVPT--LRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLI 291
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K +RL+L+GTP+QNN+ +LWSL
Sbjct: 292 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 351
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+ D + +E LH + PFLLRR K +
Sbjct: 352 NFLLPDVFNSADDFDSWF--------DTNNCLGDQKL----VERLHMVLRPFLLRRIKAD 399
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y +
Sbjct: 400 VEKSLPPKKEVKIYVGLSKMQREWYTR 426
Score = 37 (18.1 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 564 EW-EIRHGSLLGIKYLVAVRQEMLHGLL 590
+W ++R + G+ +L+++ + ++G+L
Sbjct: 176 KWGKLRDYQVRGLNWLISLYENGINGIL 203
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 395 (144.1 bits), Expect = 2.0e-26, Sum P(4) = 2.0e-26
Identities = 98/280 (35%), Positives = 153/280 (54%)
Query: 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
L+ LR YQ G++WL + KL+GIL D+MGLGKT+Q +++A E+ N
Sbjct: 624 LRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEK--GNW---- 677
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSY 1558
P LII P++++ +W E++++ L Y G+ ++R R+ + K N V ITSY
Sbjct: 678 GPHLIIVPTSVMLNWEMELKRWCPS--FKILTYYGAQKERKLKRQGWTKPNAFHVCITSY 735
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
+V +D + W Y ILDE IKN KS+ ++ + RL+L+GTP+QN++ +L
Sbjct: 736 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMEL 795
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL FLMP + R+F+ + PL + +++ G++ + LHK + PFLLRR
Sbjct: 796 WSLMHFLMPHVFQSHREFKEWFSNPLTGMIEG---SQEYNEGLV--KRLHKVLRPFLLRR 850
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQE 1718
K +V +P+K C LS Q LY+ F +E
Sbjct: 851 VKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKE 890
Score = 43 (20.2 bits), Expect = 2.0e-26, Sum P(4) = 2.0e-26
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 351 VEFKDKDSITMKREREIDLNVQVPADEPE 379
V+FK + + KR++ +DL++ + E
Sbjct: 213 VQFKQQSRLEEKRKKALDLHLDFIVGQTE 241
Score = 40 (19.1 bits), Expect = 2.0e-26, Sum P(4) = 2.0e-26
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 1745 VFQALQYLLKLCSHPLL 1761
V L L K+C+HP L
Sbjct: 900 VINILMQLRKVCNHPNL 916
Score = 37 (18.1 bits), Expect = 2.0e-26, Sum P(4) = 2.0e-26
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 199 DRRFYTSASAHNIQRLVSSMVPSVISKRPSAR--ELNMLKRKAKISSKDQSKSWS 251
+RR+ A + R+V K AR E L+R A +KD + WS
Sbjct: 154 ERRWKRGV-ARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWS 207
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 360 (131.8 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
Identities = 114/372 (30%), Positives = 181/372 (48%)
Query: 1409 GLTEGLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGI 1468
G + ++ ED +E +++ S + D + + L+ TLR YQ++G+NWLA L +GI
Sbjct: 787 GKIDKIASTDEDDSNVE-IVNGSKVKDVPIPSLLRGTLRPYQKQGLNWLASLYNNNTNGI 845
Query: 1469 LCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSL 1528
L D+MGLGKT+Q +++A E P LII P++++ +W E +KF
Sbjct: 846 LADEMGLGKTIQTISLLAYLACEHHKWG------PHLIIVPTSVMLNWEMEFKKFAPG-- 897
Query: 1529 MSTLQYVGSAQDRIALREQFDK---HNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIK 1585
L Y GS Q R R+ ++K +V ITSY +V +D + W Y ILDE H IK
Sbjct: 898 FKVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQLVVQDQQSFKRRRWTYMILDEAHNIK 957
Query: 1586 NSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMP----------GFLGTERQ 1635
N +S A+ +RL+L+GTP+QNN+ +LWSL FLMP GF +
Sbjct: 958 NFRSTRWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFLMPSSKVNQAMPEGFANLD-D 1016
Query: 1636 FQATYGKPL--VAARDSKCSAK---DAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLP-- 1688
FQ +GKP+ + + S ++ + E M+ + + L + + +L L
Sbjct: 1017 FQQWFGKPVNRILEQTSAGNSDLIDENERTTQKMDEETRNTVARLHQVLRPYLLRRLKKD 1076
Query: 1689 -EKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQ 1747
EK + +Y + +L ++F + S K E+ GN +S +
Sbjct: 1077 VEKQMPGKYEHIVYCRLSKRQRF----LYDDFMSRAKTKETL--ASGNFLS------IIN 1124
Query: 1748 ALQYLLKLCSHP 1759
L L K+C+HP
Sbjct: 1125 CLMQLRKVCNHP 1136
Score = 47 (21.6 bits), Expect = 8.5e-26, Sum P(3) = 8.5e-26
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 982 ELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISF 1029
EL + G R S++L T + ++ S+ E VE+ S DN+ +F
Sbjct: 515 ELKKIKG--RQHLSEMLEH-STQLLEAQLTSSREPTVEAESDDNSTTF 559
Score = 41 (19.5 bits), Expect = 3.5e-25, Sum P(3) = 3.5e-25
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 808 ELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTN 867
+ ATT F S + K+ + S + +V +DS S + + D ST
Sbjct: 669 DFATTTFEYSAEEKKLIEDLNQESDSRMNSLLDSDSVSSISDSESSEESSSDTEMDQSTV 728
Query: 868 S 868
S
Sbjct: 729 S 729
Score = 40 (19.1 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 1049 QMLDDIESIKQRMLTTSGYLK 1069
++LDD SI+Q +L +S L+
Sbjct: 142 KLLDDKFSIRQNVLASSKMLE 162
Score = 40 (19.1 bits), Expect = 8.5e-26, Sum P(3) = 8.5e-26
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 932 SWFKEIKSEELPGSAAVLPNLPGHLK 957
S FK I+S+E GS P+ + K
Sbjct: 177 STFKAIQSQEKAGSKLKTPSQTSNAK 202
Score = 40 (19.1 bits), Expect = 8.5e-26, Sum P(3) = 8.5e-26
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 770 LESNEEILQCSDRVWRLLVQSPVEDLE 796
LE +EI++ SD + ++S + D E
Sbjct: 226 LEDQDEIIELSDDSSVVEIESDLSDAE 252
Score = 37 (18.1 bits), Expect = 9.1e-25, Sum P(3) = 9.1e-25
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 847 ENDSS-GSVDLPQERNGDTSTNSVKITVGSDLEMSVTN 883
E+D S S D E NG+ + + T D + + N
Sbjct: 769 ESDESMNSSDRELEVNGNGKIDKIASTDEDDSNVEIVN 806
>ASPGD|ASPL0000027956 [details] [associations]
symbol:AN10677 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0006311 "meiotic gene conversion" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001305 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:LSEYFAL
EnsemblFungi:CADANIAT00003558 Uniprot:C8VG87
Length = 833
Score = 336 (123.3 bits), Expect = 2.6e-26, P = 2.6e-26
Identities = 87/270 (32%), Positives = 141/270 (52%)
Query: 1466 HG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI 1524
HG I+ D MGLGKTLQ +++ + + + + I +I CPS+LVG+WA E+ K++
Sbjct: 264 HGCIMADGMGLGKTLQCISLMWTLLKQSPEAGKTT-IQKCIIACPSSLVGNWANELGKWL 322
Query: 1525 DVSLMSTLQYVGSAQDRIALREQFDK----------HNVIITSYDVVRKDADYLGQLLWN 1574
++ G A + L Q + V+I SY+ +R D L
Sbjct: 323 GKDTITPFAVDGKAS-KTELTSQLKQWAISSGRSIVRPVLIVSYETLRMYVDTLKDSPIG 381
Query: 1575 YCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTER 1634
+ DEGH +KN +S A+ L R+ILSGTPIQN++++ ++L +F P LG++
Sbjct: 382 LLLCDEGHRLKNKESLTWTALNSLNVQRRVILSGTPIQNDLSEYFALLNFANPDLLGSQN 441
Query: 1635 QFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQD 1694
+F+ + P++ RD+ + +D + G + L V F++RRT D + LP K
Sbjct: 442 EFRKRFEIPILKGRDAAGTEEDRKKGDERLAELSSIVNKFIIRRTNDILSKYLPVKYEHV 501
Query: 1695 RYCDLSAVQLKLYEKFSGSQAKQEISSMVK 1724
+C+LS QL LY+ F S EI S+++
Sbjct: 502 VFCNLSQFQLDLYKHFIDSP---EIKSLLR 528
>UNIPROTKB|F1PW14 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015616 "DNA translocase activity"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:AAEX03015957 Ensembl:ENSCAFT00000014598 Uniprot:F1PW14
Length = 912
Score = 346 (126.9 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
Identities = 87/286 (30%), Positives = 151/286 (52%)
Query: 1435 DYKLGTELKVTLRRYQQEGINWL-AFLKRFKLHG----ILCDDMGLGKTLQASAIVASDI 1489
D + L LR +Q+EGI +L + +++G IL D+MGLGKTLQ +++ + +
Sbjct: 286 DVVIDPHLVYHLRPHQKEGIMFLYECVMGMRVNGRCGAILADEMGLGKTLQCISLIWT-L 344
Query: 1490 AERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD 1549
+ + +LI+ P +LV +W E +K++ + + R F
Sbjct: 345 QCQGPYGGKPVVKKTLIVTPGSLVNNWRKEFQKWLGSERIKIFPVDQDHKVEEFTRSPF- 403
Query: 1550 KHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
++V+I SY+++ + D + + + I DEGH +KNS K T A+ L R+IL+GT
Sbjct: 404 -YSVLIISYEMLLRSLDQIKNVKFGLLICDEGHRLKNSAIKTTAALISLSCEKRVILTGT 462
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
P+QN++ + ++L DF+ PG LG+ ++ Y +P++ +R S ++ + G L
Sbjct: 463 PVQNDLQEFFALIDFVNPGILGSLSFYRKVYEEPIIISRQPSASEEEKKLGEKRAVELTC 522
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQA 1715
F+LRRT++ + LP KI +C A+Q++LY K SQA
Sbjct: 523 LTGLFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLNSQA 568
Score = 265 (98.3 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 69/220 (31%), Positives = 116/220 (52%)
Query: 1546 EQFDK---HNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAH 1602
E+F + ++V+I SY+++ + D + + + I DEGH +KNS K T A+ L
Sbjct: 396 EEFTRSPFYSVLIISYEMLLRSLDQIKNVKFGLLICDEGHRLKNSAIKTTAALISLSCEK 455
Query: 1603 RLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVL 1662
R+IL+GTP+QN++ + ++L DF+ PG LG+ ++ Y +P++ +R S ++ + G
Sbjct: 456 RVILTGTPVQNDLQEFFALIDFVNPGILGSLSFYRKVYEEPIIISRQPSASEEEKKLGEK 515
Query: 1663 AMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSM 1722
L F+LRRT++ + LP KI +C A+Q++LY K SQA +
Sbjct: 516 RAVELTCLTGLFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLNSQAVRFCLQG 575
Query: 1723 VKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
+ GN S H+ + L KLC+HP L+
Sbjct: 576 LL---------GN------SPHLI-CIGALKKLCNHPCLL 599
Score = 45 (20.9 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 659 LAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQ 699
L E+ EE M+G +E ++ ++ DD GR FQ
Sbjct: 173 LKELEKIEEGHRVMIGG---KEVEIMGIISPDDFSSGRCFQ 210
Score = 40 (19.1 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 777 LQCSDRVWRLLVQSP 791
LQC +W L Q P
Sbjct: 335 LQCISLIWTLQCQGP 349
>UNIPROTKB|F1PJC9 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:AAEX03009776 RefSeq:XP_532592.3 Ensembl:ENSCAFT00000006871
GeneID:475368 KEGG:cfa:475368 Uniprot:F1PJC9
Length = 747
Score = 348 (127.6 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
Identities = 106/334 (31%), Positives = 172/334 (51%)
Query: 1442 LKVTLRRYQQEGINWL---AFLKRFK-LHG-ILCDDMGLGKTLQASAIVASDIAERRASN 1496
L LR +Q+EG+ +L +R HG I+ D+MGLGKTLQ ++ + + R++
Sbjct: 149 LSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLIWTLL--RQSPE 206
Query: 1497 SIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR-EQFDKHN--- 1552
EI ++++ PS+LV +W E+ K++ + L G ++D I + E F
Sbjct: 207 CKPEIDKAVVVSPSSLVKNWYNEVGKWLG-GRIQPLAIDGGSKDEIDQKLEGFMNQRGVR 265
Query: 1553 ----VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSG 1608
++I SY+ R L + I DEGH +KNS+++ A+ L + R+++SG
Sbjct: 266 VPSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISG 325
Query: 1609 TPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH 1668
TPIQN++ + +SL F+ G LGT +F+ + P++ RD+ S D + G + L
Sbjct: 326 TPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELT 385
Query: 1669 KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES 1728
V L+RRT D + LP KI Q C L+ +Q +LY++F QAK E
Sbjct: 386 SIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFL-KQAKPA--------EE 436
Query: 1729 ADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
+G+ VS+ +S + L KLC+HP L+
Sbjct: 437 LREGK-MTVSSLSS------ITLLKKLCNHPALI 463
Score = 38 (18.4 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 1231 LWDCLTEVLIP 1241
LW+C+T IP
Sbjct: 164 LWECVTSRRIP 174
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 335 (123.0 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 87/269 (32%), Positives = 142/269 (52%)
Query: 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503
+ LR YQ EG+NWL + IL D+MGLGKT Q A++ + + + P
Sbjct: 38 IRLRSYQLEGVNWLVQCFHGQNGCILGDEMGLGKTCQTIALLIYLVGR------LNDEGP 91
Query: 1504 SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA----LREQFDKHNVIITSYD 1559
LI+CP +++ +W E+E+F +S + Y G ++R LR++ H V++T+Y+
Sbjct: 92 FLILCPLSVLSNWKEEMERFAPG--LSCVTYTGDKEERARRQQDLRQESGFH-VLLTTYE 148
Query: 1560 VVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLW 1619
+ KDA +L W+ +DE H +KN S + + + RL+L+GTPIQN++ +L+
Sbjct: 149 ICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPIQNSLQELY 208
Query: 1620 SLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRT 1679
SL + P E+ + V +C +D E + LH+ + PFLLRR
Sbjct: 209 SLLSVVEPDLFCREQV------EDFV-----QCY-QDIEKESKSASELHRLLRPFLLRRV 256
Query: 1680 KDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
K +V ++LP+K Y +SA+Q K Y+
Sbjct: 257 KAQVATELPKKTEVVIYHGMSALQKKYYK 285
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 354 (129.7 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
Identities = 85/267 (31%), Positives = 141/267 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWL L ++GIL D+MGLGKTLQ +++ R P +
Sbjct: 165 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG------PHM 218
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
++ P + + +W E ++++ + + +G R A +R+ + +V +TSY+++
Sbjct: 219 VLVPKSTLHNWMNEFKRWVPT--LRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLI 276
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
K+ + W Y ++DE H IKN KSK++ V++ K +RL+L+GTP+QNN+ +LW+L
Sbjct: 277 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 336
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + D+ D + +E LH + PFLLRR K +
Sbjct: 337 NFLLPDVFNSSEDFDSWF--------DTNNCLGDQKL----VERLHMVLRPFLLRRIKAD 384
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V LP K Y LS +Q + Y +
Sbjct: 385 VEKSLPPKKEVKIYVGLSKMQREWYTR 411
Score = 37 (18.1 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 564 EW-EIRHGSLLGIKYLVAVRQEMLHGLL 590
+W ++R + G+ +L+++ + ++G+L
Sbjct: 161 KWGKLRDYQVRGLNWLISLYENGINGIL 188
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 335 (123.0 bits), Expect = 5.1e-26, P = 5.1e-26
Identities = 84/267 (31%), Positives = 138/267 (51%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
+R YQ G+NW+ L ++GIL D+MGLGKTLQ +++ + N + P +
Sbjct: 128 MRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGY---LKHFKN---QAGPHI 181
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA-LREQF--DKHNVIITSYDVVR 1562
+I P + + +W E +K+ SL + +G R +R+ + +V +TSY++
Sbjct: 182 VIVPKSTLQNWVNEFKKWCP-SLRAVC-LIGDQDTRNTFIRDVLMPGEWDVCVTSYEMCI 239
Query: 1563 KDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622
++ + W Y ++DE H IKN KSK++ +++ K A+RL+++GTP+QNN+ +LW+L
Sbjct: 240 REKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALL 299
Query: 1623 DFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDE 1682
+FL+P + F + + C DA + LH + PFLLRR K E
Sbjct: 300 NFLLPDVFNSSEDFDEWFNT-------NTCLGDDA-----LITRLHAVLKPFLLRRLKAE 347
Query: 1683 VLSDLPEKIIQDRYCDLSAVQLKLYEK 1709
V L K + LS +Q Y K
Sbjct: 348 VEKRLKPKKEMKIFVGLSKMQRDWYTK 374
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 347 (127.2 bits), Expect = 5.9e-26, Sum P(3) = 5.9e-26
Identities = 94/292 (32%), Positives = 151/292 (51%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
L+ YQ G+NWL L + KL GIL D+MGLGKT+QA + +A E P L
Sbjct: 429 LKPYQLIGLNWLVLLHQNKLSGILADEMGLGKTIQAISFLAHLYQEGNHG-------PHL 481
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR----EQFDKHNVIITSYDVV 1561
I P++ + +W E+ + L Y GSA DR +R Q ++N+I+++Y++
Sbjct: 482 ITVPASTLDNWVRELNLWCPS--FKVLVYYGSADDRKYMRYEILNQIVEYNIIVSTYNLA 539
Query: 1562 ---RKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
D +L Y + DEGH++KN S + + A +RL+L+GTP+QNN+ +L
Sbjct: 540 IGNSSDRSLFCKLKLEYAVFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQNNLLEL 599
Query: 1619 WSLFDFLMPG-FLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLR 1677
SL +F+MP F + Q + + ++ + +D + + + K PF+LR
Sbjct: 600 MSLLNFIMPNMFSSSTSQIAKMFS--MKSSEEQSSFERDR---ITHAKLIMK---PFILR 651
Query: 1678 RTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE------KFSGSQAKQEISSMV 1723
R K EVL LP K Q +C +S Q +LY K S + K+E+++++
Sbjct: 652 RVKSEVLKQLPAKEEQVEFCAMSERQQELYSALLHKLKHSSNGEKRELTNVM 703
Score = 54 (24.1 bits), Expect = 5.9e-26, Sum P(3) = 5.9e-26
Identities = 18/67 (26%), Positives = 28/67 (41%)
Query: 234 MLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEHEG 293
M ++K SS D + + D +P P GS ++ +D+ D DS E G
Sbjct: 1 MRRKKGPASSSDHEEP--PESDSVIPETPETKRPSGSS---LSTAISDSDSDSDS-EISG 54
Query: 294 DGLWPFR 300
+ P R
Sbjct: 55 SSMMPVR 61
Score = 45 (20.9 bits), Expect = 6.6e-26, Sum P(4) = 6.6e-26
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 565 WEIRHGSLLGIKYLVAVRQEMLHGLL 590
++++ L+G+ +LV + Q L G+L
Sbjct: 427 FQLKPYQLIGLNWLVLLHQNKLSGIL 452
Score = 37 (18.1 bits), Expect = 5.9e-26, Sum P(3) = 5.9e-26
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 1000 AMETSSMFTEMLSANEIDVESLS 1022
A+ET MF++++ +E D S
Sbjct: 210 ALETLRMFSDLVVESEDDSSQTS 232
Score = 37 (18.1 bits), Expect = 6.6e-26, Sum P(4) = 6.6e-26
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 432 SSVKVEPESNLDGLSHPSKEAIDILEPRGQS 462
S + VE E + S P+K + E R Q+
Sbjct: 218 SDLVVESEDDSSQTSTPAKHTRRVAETRPQA 248
>UNIPROTKB|Q92698 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006310
"DNA recombination" evidence=TAS] [GO:0007126 "meiosis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0042493 GO:GO:0003677 GO:GO:0006281 GO:GO:0010212
GO:GO:0006310 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_RAD54L GO:GO:0036310 EMBL:AL121602 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG
EMBL:X97795 EMBL:AY623117 EMBL:BC121059 EMBL:BC121060
IPI:IPI00294292 RefSeq:NP_001136020.1 RefSeq:NP_003570.2
UniGene:Hs.642042 ProteinModelPortal:Q92698 SMR:Q92698
DIP:DIP-48628N IntAct:Q92698 STRING:Q92698 PhosphoSite:Q92698
DMDM:51316508 PaxDb:Q92698 PRIDE:Q92698 Ensembl:ENST00000371975
Ensembl:ENST00000442598 GeneID:8438 KEGG:hsa:8438 UCSC:uc001cpl.2
CTD:8438 GeneCards:GC01P046713 HGNC:HGNC:9826 MIM:603615
neXtProt:NX_Q92698 PharmGKB:PA34181 InParanoid:Q92698
PhylomeDB:Q92698 ChiTaRS:RAD54L GenomeRNAi:8438 NextBio:31570
ArrayExpress:Q92698 Bgee:Q92698 Genevestigator:Q92698
GermOnline:ENSG00000085999 Uniprot:Q92698
Length = 747
Score = 346 (126.9 bits), Expect = 6.1e-26, Sum P(2) = 6.1e-26
Identities = 106/334 (31%), Positives = 170/334 (50%)
Query: 1442 LKVTLRRYQQEGINWL---AFLKRFK-LHG-ILCDDMGLGKTLQASAIVASDIAERRASN 1496
L LR +Q+EG+ +L +R HG I+ D+MGLGKTLQ ++ + + R++
Sbjct: 149 LSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLL--RQSPE 206
Query: 1497 SIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR-EQFDKHN--- 1552
EI ++++ PS+LV +W E+ K++ + L G ++D I + E F
Sbjct: 207 CKPEIDKAVVVSPSSLVKNWYNEVGKWLG-GRIQPLAIDGGSKDEIDQKLEGFMNQRGAR 265
Query: 1553 ----VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSG 1608
++I SY+ R L + I DEGH +KNS+++ A+ L + R+++SG
Sbjct: 266 VSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISG 325
Query: 1609 TPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH 1668
TPIQN++ + +SL F+ G LGT +F+ + P++ RD+ S D + G + L
Sbjct: 326 TPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELT 385
Query: 1669 KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES 1728
V L+RRT D + LP KI Q C L+ +Q +LY++F QAK +E
Sbjct: 386 SIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFL-RQAKP-------AEEL 437
Query: 1729 ADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
EG K S ++ L KLC+HP L+
Sbjct: 438 L---EG-----KMSVSSLSSITSLKKLCNHPALI 463
Score = 38 (18.4 bits), Expect = 6.1e-26, Sum P(2) = 6.1e-26
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 1231 LWDCLTEVLIP 1241
LW+C+T IP
Sbjct: 164 LWECVTSRRIP 174
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 352 (129.0 bits), Expect = 7.6e-26, Sum P(2) = 7.6e-26
Identities = 90/271 (33%), Positives = 149/271 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR +Q G+NW+AFL +GIL D+MGLGKT+Q A ++ I RR + P L
Sbjct: 362 LRDFQLTGLNWMAFLWSRNENGILADEMGLGKTVQTVAFLSWLIYARRQNG------PHL 415
Query: 1506 IICPSTLVGHWAFEIEKFI-DVSLMSTLQYVGSAQDRIALRE-------QFDKHNVIITS 1557
++ P + V W EK+ DV+ + Y+G+ + R +RE + K NV++T+
Sbjct: 416 VVVPLSTVPAWQETFEKWAPDVNCV---YYLGNGEARKTIREYELYNQNRKPKFNVLLTT 472
Query: 1558 YDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITD 1617
Y+ + KD + LG W + +DE H +KN++S + A+K K ++RL+++GTP+QNN+ +
Sbjct: 473 YEYILKDKNELGAFKWQFLAVDEAHRLKNAESSLYEALKGFKVSNRLLITGTPLQNNVKE 532
Query: 1618 LWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLR 1677
L +L +FLMPG +++ D + + E + + L K++ PF+LR
Sbjct: 533 LAALCNFLMPGKFTIDQEI------------DFETIDSEQEQYI---KDLQKKISPFILR 577
Query: 1678 RTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
R K +V LP K + +LS +Q + Y+
Sbjct: 578 RLKKDVEKSLPSKSERILRVELSDIQTEYYK 608
Score = 41 (19.5 bits), Expect = 7.6e-26, Sum P(2) = 7.6e-26
Identities = 22/92 (23%), Positives = 36/92 (39%)
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGN 1735
L + KDE E+ +QD Q+ +Y + + K E S V D D GE +
Sbjct: 921 LTKLKDEEKRKADEQYLQD--------QIAMYSRRKAAVRKFENGSSVPSDVE-DSGEDS 971
Query: 1736 NVSAKASTHVFQALQYLLKLCSHPLLVLGDKS 1767
+ + Q + ++ +L GD S
Sbjct: 972 RPLRRRNAGDHQLSEKEIRGIYRSILKWGDLS 1003
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 331 (121.6 bits), Expect = 8.1e-26, P = 8.1e-26
Identities = 99/328 (30%), Positives = 167/328 (50%)
Query: 1446 LRRYQQEGINWLAFL---KRFKLHG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
LR +Q+EG+ ++ K+ +G I+ D+MGLGKTLQ +V + + R+ S I
Sbjct: 159 LRPHQREGVRFMYECVEGKKGDFNGCIMADEMGLGKTLQCVTLVWTLL--RQGPESKPTI 216
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN------VII 1555
+ ++++ PS+LV +W E K++ L+ G+ ++ I + EQF + V++
Sbjct: 217 NKAIVVSPSSLVKNWEKEFTKWLQGRLLCLAMEGGTKENTIRVLEQFSMTSSKLGTPVLL 276
Query: 1556 TSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNI 1615
SY+ R A+ L + I DEGH +KNS + A+ LK R++LSGTPIQN++
Sbjct: 277 ISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDL 336
Query: 1616 TDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675
T+ +SL +F+ P LGT F+ + ++ +++ + + + + + L V +
Sbjct: 337 TEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTEGERKKAIEKTQELIGLVDQCI 396
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGS-QAKQEISSMVKVDESADKGEG 1734
+RRT + LP K L+A+QL+LY F S Q ++ + AD E
Sbjct: 397 IRRTNQILTKYLPIKFEMVICVKLTAIQLQLYTNFLNSDQVRRSL---------ADCNE- 446
Query: 1735 NNVSAKASTHVFQALQYLLKLCSHPLLV 1762
KAS + L K+CSHP L+
Sbjct: 447 -----KASLTALADITTLKKICSHPDLI 469
>ASPGD|ASPL0000017334 [details] [associations]
symbol:AN3811 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_661415.1
ProteinModelPortal:Q5B6L9 EnsemblFungi:CADANIAT00004901
GeneID:2873228 KEGG:ani:AN3811.2 HOGENOM:HOG000183446 OMA:CRIGLTG
OrthoDB:EOG4R539X Uniprot:Q5B6L9
Length = 1016
Score = 344 (126.2 bits), Expect = 8.6e-26, Sum P(3) = 8.6e-26
Identities = 105/345 (30%), Positives = 172/345 (49%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVAS----------DIAERRAS 1495
LR YQ EG +L L ++ GIL DDMGLGKT+Q A + + D R+
Sbjct: 245 LRPYQVEGAAFLHQLFVYQKGGILGDDMGLGKTVQVIAFLTAAYGKTGDERDDKRMRKMR 304
Query: 1496 NSIEEI-HP-SLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNV 1553
S ++ +P +LIICP TL+ +W E+ ++ Y GS +D + + + +
Sbjct: 305 RSEGDLWYPRTLIICPGTLIENWKSEMSRW---GWWHFDAYQGSNKDLVLHAAKSGRVEI 361
Query: 1554 IITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQN 1613
+IT+Y K+ D + + W+ I DE H IK S+ T A+ + A R+ L+GT IQN
Sbjct: 362 LITTYSTYLKNRDAVNMVDWDCVIADECHAIKERSSETTKAMNDINALCRIGLTGTAIQN 421
Query: 1614 NITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMP 1673
+LW+L ++ PG +G +++ +PL + + + + + L + ++P
Sbjct: 422 RYEELWTLLNWTNPGRMGPVTTWKSHVSEPLKIGQSHDATVQQLRRARVTAKKLVENLLP 481
Query: 1674 -FLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEI-SSMVKVDESADK 1731
F LRR K + LP+KI + +C L+ Q + YE+ S I +S K D + +
Sbjct: 482 QFFLRRMKTLIADQLPKKIDRVVFCPLTDTQAQAYERLLDSDIIHYIKTSTNKCDCGSGR 541
Query: 1732 GEG---NNV--SAKA-STHVFQALQYLLKLCSHPLLVLGDKSPES 1770
G + S + T+VF A+Q L KL +H L +L +S +S
Sbjct: 542 KAGWCCHQYLPSGRRWQTYVFPAMQILQKLSNH-LAILIPQSTDS 585
Score = 56 (24.8 bits), Expect = 8.6e-26, Sum P(3) = 8.6e-26
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 355 DKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVS 400
D D+ + E++ D P+ EPE + K+K +P P T+ S
Sbjct: 19 DDDTNSTPSEKDHDTTHAHPSPEPESIKPKVKIP-SPSPSRSTLAS 63
Score = 38 (18.4 bits), Expect = 8.6e-26, Sum P(3) = 8.6e-26
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 448 PSKEAIDILEPRGQSGEKGDFLNSETLKNLPENSELMNWLKLARHSWQKNCEFLQDCAIR 507
P K+ + P K + L+ + +L E++ L ++L+ R + + E LQD ++
Sbjct: 136 PRKKEVRGFRPTYLRDYKEEVLSDD---DLMEDT-LPDYLQKRRLQFDRRLEHLQDAGLK 191
>UNIPROTKB|E2RGN3 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001890 Uniprot:E2RGN3
Length = 925
Score = 332 (121.9 bits), Expect = 8.8e-26, P = 8.8e-26
Identities = 107/386 (27%), Positives = 188/386 (48%)
Query: 1446 LRRYQQEGINWL-AFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
LR YQ+EG +L A + K IL DDMGLGKT+Q + +A+ + ++ IE P
Sbjct: 61 LRDYQREGAQFLYAHFIQGK-GCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPE 119
Query: 1505 -------------------LIICPSTLVGHWAFEIEK--FIDVSLMSTLQYVGSAQDRIA 1543
LI+ P +++ +W E++ + V+++ G+ +D
Sbjct: 120 FLLRSMKKEPPSSTAKKMFLIVAPLSVLYNWRDELDTWGYFRVTILH-----GNKKDNEL 174
Query: 1544 LREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHR 1603
+R + K + +T+Y+ +R D L L W+ I+DE H IKN K+++T +K LK R
Sbjct: 175 VRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHKIKNPKARVTEVMKALKCNVR 234
Query: 1604 LILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLA 1663
+ L+GT +QNN+ +LW + D+ +PG LG+ F+ + P+ + + ++ G A
Sbjct: 235 IGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKA 294
Query: 1664 MEALHKQVMPFLLRRTKDEVLSDLPEKIIQDR--YCDLSAVQLKLYEKFSGSQAKQEISS 1721
M+ L K + + LRRTK + LP+K +DR YC L+ Q +Y+ ++ +++
Sbjct: 295 MQRLAKMMSGWFLRRTKTLIKDQLPKK--EDRMVYCSLTDFQKAVYQTVLETK---DVTL 349
Query: 1722 MVKVDESADKGEGN---NVSAKASTH-------VFQALQYLLKLCSHPLLVLG---DKSP 1768
+++ E G N K ++H F L L K+ +H L+ K
Sbjct: 350 ILQSSEPCSCSSGRKRRNCCYKTNSHGETVKTLYFSYLAVLQKVANHVALLQSASTSKQQ 409
Query: 1769 ESLLCHL-SELFPGSSDIISELHKAS 1793
E+L+ + ++F D + + AS
Sbjct: 410 ETLIKRICDQVFSKFPDFVQKSKDAS 435
>UNIPROTKB|F1PQX1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001906 OMA:QSSQPCT
Uniprot:F1PQX1
Length = 995
Score = 332 (121.9 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 107/386 (27%), Positives = 188/386 (48%)
Query: 1446 LRRYQQEGINWL-AFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
LR YQ+EG +L A + K IL DDMGLGKT+Q + +A+ + ++ IE P
Sbjct: 123 LRDYQREGAQFLYAHFIQGK-GCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPE 181
Query: 1505 -------------------LIICPSTLVGHWAFEIEK--FIDVSLMSTLQYVGSAQDRIA 1543
LI+ P +++ +W E++ + V+++ G+ +D
Sbjct: 182 FLLRSMKKEPPSSTAKKMFLIVAPLSVLYNWRDELDTWGYFRVTILH-----GNKKDNEL 236
Query: 1544 LREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHR 1603
+R + K + +T+Y+ +R D L L W+ I+DE H IKN K+++T +K LK R
Sbjct: 237 VRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHKIKNPKARVTEVMKALKCNVR 296
Query: 1604 LILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLA 1663
+ L+GT +QNN+ +LW + D+ +PG LG+ F+ + P+ + + ++ G A
Sbjct: 297 IGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKA 356
Query: 1664 MEALHKQVMPFLLRRTKDEVLSDLPEKIIQDR--YCDLSAVQLKLYEKFSGSQAKQEISS 1721
M+ L K + + LRRTK + LP+K +DR YC L+ Q +Y+ ++ +++
Sbjct: 357 MQRLAKMMSGWFLRRTKTLIKDQLPKK--EDRMVYCSLTDFQKAVYQTVLETK---DVTL 411
Query: 1722 MVKVDESADKGEGN---NVSAKASTH-------VFQALQYLLKLCSHPLLVLG---DKSP 1768
+++ E G N K ++H F L L K+ +H L+ K
Sbjct: 412 ILQSSEPCSCSSGRKRRNCCYKTNSHGETVKTLYFSYLAVLQKVANHVALLQSASTSKQQ 471
Query: 1769 ESLLCHL-SELFPGSSDIISELHKAS 1793
E+L+ + ++F D + + AS
Sbjct: 472 ETLIKRICDQVFSKFPDFVQKSKDAS 497
>UNIPROTKB|B4GS98 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7234 "Drosophila persimilis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043150 EMBL:CH479189 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002021802.1 EnsemblMetazoa:FBtr0192316
GeneID:6596280 KEGG:dpe:Dper_GL26701 FlyBase:FBgn0164282
Uniprot:B4GS98
Length = 782
Score = 330 (121.2 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 101/329 (30%), Positives = 167/329 (50%)
Query: 1446 LRRYQQEGINWLAFL---KRFKLHG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
LR +Q+EG+ ++ KR +G I+ D+MGLGKTLQ A+V + + ++++ I
Sbjct: 152 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVALVWTLL--KQSAECKPTI 209
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN-------VI 1554
+ +I+ PS+LV +W E K++ + GS ++ + EQF + V+
Sbjct: 210 NKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQFSMNASTRLGTPVL 269
Query: 1555 ITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNN 1614
+ SY+ R A+ L + I DEGH +KNS + A+ LK R++LSGTPIQN+
Sbjct: 270 LISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQND 329
Query: 1615 ITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPF 1674
+T+ +SL +F+ P LGT F+ + ++ +++ + K+ + + + L K V
Sbjct: 330 LTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRALEKTQELIKLVDQC 389
Query: 1675 LLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGS-QAKQEISSMVKVDESADKGE 1733
++RRT + LP K L+ +QL+LY F S Q ++ + AD E
Sbjct: 390 IIRRTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQVRRSL---------ADCKE 440
Query: 1734 GNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
KAS + L KLCSHP L+
Sbjct: 441 ------KASLTALADITTLKKLCSHPNLI 463
>UNIPROTKB|Q29KH2 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0000711 "meiotic DNA repair synthesis" evidence=ISS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0043150 "DNA synthesis
involved in double-strand break repair via homologous
recombination" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH379061 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001356143.2
GeneID:4816519 KEGG:dpo:Dpse_GA17651 FlyBase:FBgn0077662
InParanoid:Q29KH2 Uniprot:Q29KH2
Length = 782
Score = 330 (121.2 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 101/329 (30%), Positives = 167/329 (50%)
Query: 1446 LRRYQQEGINWLAFL---KRFKLHG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
LR +Q+EG+ ++ KR +G I+ D+MGLGKTLQ A+V + + ++++ I
Sbjct: 152 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVALVWTLL--KQSAECKPTI 209
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN-------VI 1554
+ +I+ PS+LV +W E K++ + GS ++ + EQF + V+
Sbjct: 210 NKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQFSMNASTRLGTPVL 269
Query: 1555 ITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNN 1614
+ SY+ R A+ L + I DEGH +KNS + A+ LK R++LSGTPIQN+
Sbjct: 270 LISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQND 329
Query: 1615 ITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPF 1674
+T+ +SL +F+ P LGT F+ + ++ +++ + K+ + + + L K V
Sbjct: 330 LTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRALEKTQELIKLVDQC 389
Query: 1675 LLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGS-QAKQEISSMVKVDESADKGE 1733
++RRT + LP K L+ +QL+LY F S Q ++ + AD E
Sbjct: 390 IIRRTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQVRRSL---------ADCKE 440
Query: 1734 GNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
KAS + L KLCSHP L+
Sbjct: 441 ------KASLTALADITTLKKLCSHPNLI 463
>UNIPROTKB|F1S3V8 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 OMA:TYQALMG EMBL:CU694667
Ensembl:ENSSSCT00000004320 Uniprot:F1S3V8
Length = 747
Score = 344 (126.2 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 105/334 (31%), Positives = 170/334 (50%)
Query: 1442 LKVTLRRYQQEGINWL---AFLKRFK-LHG-ILCDDMGLGKTLQASAIVASDIAERRASN 1496
L LR +Q+EG+ +L +R HG I+ D+MGLGKTLQ ++ + + R++ +
Sbjct: 149 LSKVLRPHQREGVRFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLL--RQSPD 206
Query: 1497 SIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR-EQFDKHN--- 1552
EI ++++ PS+LV +W E+ K++ + GS +D I + E F
Sbjct: 207 CKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDAGS-KDEIDQKLEGFMNQRGAR 265
Query: 1553 ----VIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSG 1608
++I SY+ R L + I DEGH +KNS+++ A+ L + R+++SG
Sbjct: 266 VPSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISG 325
Query: 1609 TPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALH 1668
TPIQN++ + +SL F+ G LGT +F+ + P++ RD+ S +D G + L
Sbjct: 326 TPIQNDLLEYFSLVHFVNSGLLGTAHEFKKRFELPILKGRDAAASEEDRRLGEERLRELT 385
Query: 1669 KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDES 1728
V L+RRT D + LP KI Q C L+ +Q +LY++F QAK +
Sbjct: 386 SIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFL-RQAKP----------A 434
Query: 1729 ADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLV 1762
+ EG K S ++ L KLC+HP L+
Sbjct: 435 EELREG-----KMSVSSLSSITSLKKLCNHPALI 463
Score = 38 (18.4 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 1231 LWDCLTEVLIP 1241
LW+C+T IP
Sbjct: 164 LWECVTSRRIP 174
>DICTYBASE|DDB_G0285117 [details] [associations]
symbol:rad54b "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0285117 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000074 KO:K10877 RefSeq:XP_639875.1 STRING:Q54NP1
EnsemblProtists:DDB0232413 GeneID:8624946 KEGG:ddi:DDB_G0285117
InParanoid:Q54NP1 OMA:PINKSRE ProtClustDB:CLSZ2735674
Uniprot:Q54NP1
Length = 989
Score = 344 (126.2 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 98/308 (31%), Positives = 164/308 (53%)
Query: 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVS 1527
IL D MGLGKTLQ A++ + + +++ I ++I+ PSTLV +W EI+K+
Sbjct: 307 ILADQMGLGKTLQTLALLWTLL--KQSPYGKPTIKKAIIVTPSTLVNNWKSEIQKWFGNG 364
Query: 1528 --LMSTLQYVGSAQDRIALREQFDKH--NVIITSYDVVRKDADYLGQLLWNYCILDEGHI 1583
+ STL + + + L + F+ V+I SY+ R + L + + DE H
Sbjct: 365 RLIASTLTDSLTKETKANLND-FNTSIKPVLIISYEQCRIFSKELETMSCGLMVCDEAHR 423
Query: 1584 IKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKP 1643
+KNS +K T ++ ++ +++L+GTPIQNN+ + +S+ DF P LG+ F+ ++ P
Sbjct: 424 LKNSNAKTTQSIMSVRCDRKILLTGTPIQNNLVEFYSMMDFANPNCLGSLADFKKSFIIP 483
Query: 1644 LVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSD-LPEKIIQDRYCDLSAV 1702
+ +R+S S +E G+ L K V PF++RR K +L LP K +Q +C LS++
Sbjct: 484 INKSRESPNSTSTSE-GIRKSIQLSKLVKPFIIRR-KSNILEKYLPPKRVQIIFCKLSSL 541
Query: 1703 QLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHP-LL 1761
Q++LY+ S + + + S G G+ SA + + L KLC+ P LL
Sbjct: 542 QIELYKSILNSNSVKSLLS----------GGGSRGSATS----LSTITLLKKLCNSPSLL 587
Query: 1762 VLGDKSPE 1769
+L +K E
Sbjct: 588 LLNNKQDE 595
Score = 47 (21.6 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 1011 LSANEIDVESLSADNAISFASKLQL-LGSNSDGSESLSRQMLDDIESIKQRM 1061
+S+ E+ +E + A+ L+ L SNS S SLS + + +Q++
Sbjct: 142 ISSKEVLIEHIITSKEFEKATGLESSLVSNSTSSSSLSTTTIRKLSKKQQKL 193
Score = 45 (20.9 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 216 SSMVPSVISKRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPH 260
S+ + S S E K KA SS + KS + D E+ H
Sbjct: 39 STTSTTTTSSSSSPIETQKTKSKANSSSNNNDKSEDKTNDGELIH 83
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 327 (120.2 bits), Expect = 1.6e-25, P = 1.6e-25
Identities = 88/284 (30%), Positives = 149/284 (52%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
LR YQ+EG +L + + G IL DDMGLGKT+Q + +A+ + ++ IE P
Sbjct: 122 LRDYQREGAQFL-YRHYIEGRGCILGDDMGLGKTIQVISFLAAVLHKKGTREDIENNMPE 180
Query: 1505 ------------------LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE 1546
LI+ P +++ +W E++ + ++ L GS +D LR
Sbjct: 181 FLLKSMKKKPPSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTVLH--GSKKDNELLRL 237
Query: 1547 QFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLIL 1606
+ K + +T+Y+ +R + L L W+ I+DE H IKN K+++T +K +K R+ L
Sbjct: 238 KQRKCEIALTTYETLRLCLEELNSLEWSAIIVDEAHRIKNPKARVTEVMKAVKCKVRIGL 297
Query: 1607 SGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEA 1666
+GT +QNN+ +LW + D+ +PG LG+ F+ + P+ + + ++ G AM
Sbjct: 298 TGTVLQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMHR 357
Query: 1667 LHKQVMPFLLRRTKDEVLSDLPEKIIQDR--YCDLSAVQLKLYE 1708
L K++ + LRRTK + LP+K +DR YC L+ Q +Y+
Sbjct: 358 LAKKMSGWFLRRTKTLIKGQLPKK--EDRMVYCSLTDFQKAVYQ 399
>UNIPROTKB|H9L0N0 [details] [associations]
symbol:H9L0N0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02032856 EMBL:AADN02032857
EMBL:AADN02032858 EMBL:AADN02032859 EMBL:AADN02032860
EMBL:AADN02032861 EMBL:AADN02032862 EMBL:AADN02032863
EMBL:AADN02032864 EMBL:AADN02032865 Ensembl:ENSGALT00000023599
Uniprot:H9L0N0
Length = 1444
Score = 332 (121.9 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 88/271 (32%), Positives = 138/271 (50%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR YQ G+NWLA IL D+MGLGKT+Q + + E E P L
Sbjct: 156 LRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH------ELYGPFL 209
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH--------NVIITS 1557
++ P + + W EI+ + M+ + Y+G R +R H N+++T+
Sbjct: 210 LVVPLSTLTSWQREIQTW--APQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTT 267
Query: 1558 YDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITD 1617
Y+++ KD +LG L W + +DE H +KN S + + K+ HRL+++GTP+QN++ +
Sbjct: 268 YEILLKDKSFLGGLNWVFIGIDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKE 327
Query: 1618 LWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLR 1677
LWSL F+MP + F+ +GK E G + LHK++ PFLLR
Sbjct: 328 LWSLLHFIMPEKFSSWEDFEEEHGK-------------GREFGYAS---LHKELEPFLLR 371
Query: 1678 RTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
R K +V LP K+ Q ++SA+Q + Y+
Sbjct: 372 RVKKDVEKSLPAKVEQILRMEMSALQKQYYK 402
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 395 (144.1 bits), Expect = 1.9e-25, Sum P(5) = 1.9e-25
Identities = 98/280 (35%), Positives = 153/280 (54%)
Query: 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
L+ LR YQ G++WL + KL+GIL D+MGLGKT+Q +++A E+ N
Sbjct: 614 LRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEK--GNW---- 667
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN---VIITSY 1558
P LII P++++ +W E++++ L Y G+ ++R R+ + K N V ITSY
Sbjct: 668 GPHLIIVPTSVMLNWEMELKRWCPS--FKILTYYGAQKERKLKRQGWTKPNAFHVCITSY 725
Query: 1559 DVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618
+V +D + W Y ILDE IKN KS+ ++ + RL+L+GTP+QN++ +L
Sbjct: 726 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMEL 785
Query: 1619 WSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678
WSL FLMP + R+F+ + PL + +++ G++ + LHK + PFLLRR
Sbjct: 786 WSLMHFLMPHVFQSHREFKEWFSNPLTGMIEG---SQEYNEGLV--KRLHKVLRPFLLRR 840
Query: 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQE 1718
K +V +P+K C LS Q LY+ F +E
Sbjct: 841 VKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKE 880
Score = 44 (20.5 bits), Expect = 1.9e-25, Sum P(5) = 1.9e-25
Identities = 21/119 (17%), Positives = 48/119 (40%)
Query: 351 VEFKDKDSITMKREREIDLNVQVPADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNIS 410
V+FK + + KR++ +DL++ + E + + PL + C G + +
Sbjct: 213 VQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLS-QSLNQPLTSSKAGSSPCLGSSSA 271
Query: 411 I--------KVDDSGCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQ 461
++DD + + D +++VE + + +E I++L G+
Sbjct: 272 ASSPPPPASRLDDEDGDFQPQEDEEEDDEETIEVEEQQEGNDAEAQRRE-IELLRREGE 329
Score = 40 (19.1 bits), Expect = 1.9e-25, Sum P(5) = 1.9e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 1745 VFQALQYLLKLCSHPLL 1761
V L L K+C+HP L
Sbjct: 890 VINILMQLRKVCNHPNL 906
Score = 39 (18.8 bits), Expect = 1.9e-25, Sum P(5) = 1.9e-25
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 1412 EGLSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQE 1452
E S +EDAQ Q + DD+ G E + Q E
Sbjct: 525 ESESEESEDAQSQSQADEEEEDDDF--GVEYLLARDEEQSE 563
Score = 37 (18.1 bits), Expect = 1.9e-25, Sum P(5) = 1.9e-25
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 199 DRRFYTSASAHNIQRLVSSMVPSVISKRPSAR--ELNMLKRKAKISSKDQSKSWS 251
+RR+ A + R+V K AR E L+R A +KD + WS
Sbjct: 154 ERRWKRGV-ARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWS 207
Score = 37 (18.1 bits), Expect = 9.6e-25, Sum P(5) = 9.6e-25
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 679 QEFDLNEVVRADDVGEGRDFQANPYMLSML 708
+E D E + ++ EG D +A + +L
Sbjct: 295 EEEDDEETIEVEEQQEGNDAEAQRREIELL 324
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 328 (120.5 bits), Expect = 2.1e-25, P = 2.1e-25
Identities = 107/361 (29%), Positives = 175/361 (48%)
Query: 1425 EQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGIL-CDDMGLGKTLQASA 1483
E N+ D + G + TL+ +Q EG++WL ++ +L D MGLGKTLQA +
Sbjct: 32 EAKFSNTPPDCSEFG--VTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAIS 89
Query: 1484 IVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA 1543
+ S + R+ P L++CP ++ W EI +F + L+YVG R+
Sbjct: 90 FL-SYLKFRQGLPG-----PFLVLCPLSVTDGWVSEINRF--TPNLEVLRYVGDKYCRLD 141
Query: 1544 LREQFDKH------------NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKI 1591
+R+ H +V++T+YD+ D D+L Q+ W Y I+DE +KN S +
Sbjct: 142 MRKSMYDHVKKSSKGHFLPFDVLLTTYDIALVDQDFLSQIPWQYAIIDEAQRLKNPNSVL 201
Query: 1592 -TVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDS 1650
V ++Q RL+++GTPIQNN+T+LW+L F MP GT QF + + + D
Sbjct: 202 YNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKE----TGDG 257
Query: 1651 KCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQ--LKLYE 1708
S D ++L + F+LRRTK ++ ++ +L+ + + L +
Sbjct: 258 -LSGLDVSNDKETYKSLKFILGAFMLRRTKSLLIES--GNLVLPPLTELTVMVPLVSLQK 314
Query: 1709 KFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSP 1768
K S ++E+ ++++ G N+ S + V Q L K CSHP L G + P
Sbjct: 315 KIYTSILRKELPGLLELSS----GGSNHTSLQ--NIVIQ----LRKACSHPYLFPGIE-P 363
Query: 1769 E 1769
E
Sbjct: 364 E 364
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 349 (127.9 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 91/271 (33%), Positives = 149/271 (54%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSL 1505
LR +Q G+NW+A+L +GIL D+MGLGKT+Q A + S +A +S+ + P L
Sbjct: 375 LRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFL-SYLA-----HSLRQHGPFL 428
Query: 1506 IICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE-QF--D-----KHNVIITS 1557
++ P + V W + + S M+ + Y+G+ R +R+ +F D K N+++T+
Sbjct: 429 VVVPLSTVPAWQETLALW--ASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFNLLLTT 486
Query: 1558 YDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITD 1617
Y+ V KD L + W Y +DE H +KNS+S + A+ Q K ++RL+++GTP+QNNI +
Sbjct: 487 YEYVLKDRSVLSNIKWQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRE 546
Query: 1618 LWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLR 1677
L +L DFLMPG +F+ + A D E + +L + + P++LR
Sbjct: 547 LAALVDFLMPG------KFEIR--------EEINLEAPDEEQEAY-IRSLQEHLQPYILR 591
Query: 1678 RTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
R K +V LP K + +LS +Q+ Y+
Sbjct: 592 RLKKDVEKSLPSKSERILRVELSDLQMYWYK 622
Score = 38 (18.4 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 1703 QLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLL 1753
+LK+ +K KQ +S+ K E+ +K ++ H+ + +YLL
Sbjct: 1151 ELKMKDKIFLEDTKQTDNSVPKDKENKEK------KVPSAVHLVRRGEYLL 1195
Score = 38 (18.4 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 1695 RYCDLSAVQLKLYEKFSGS--QAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQ 1750
+Y DL+ + +K + A ++ S + D S D+ N S KA F+ ++
Sbjct: 1022 KYADLTTQDAHVIKKIAADLVTASRKAVSAAEKDLSNDQSN-NKSSRKALLITFKGVK 1078
>ASPGD|ASPL0000055935 [details] [associations]
symbol:AN0855 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0032392 "DNA geometric change"
evidence=IEA] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
EMBL:AACD01000013 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10877 HOGENOM:HOG000204521 OMA:NTENTRT
OrthoDB:EOG4CVKG1 RefSeq:XP_658459.1 ProteinModelPortal:Q5BF25
STRING:Q5BF25 EnsemblFungi:CADANIAT00001803 GeneID:2876630
KEGG:ani:AN0855.2 Uniprot:Q5BF25
Length = 1011
Score = 340 (124.7 bits), Expect = 3.9e-25, Sum P(2) = 3.9e-25
Identities = 87/279 (31%), Positives = 145/279 (51%)
Query: 1446 LRRYQQEGINWL----AFLKRFKLHG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEE 1500
LR +Q+EG+ +L ++ F G IL DDMGLGKTLQ ++ + + + +
Sbjct: 295 LRPHQREGVKFLYECVMGMRSFNGEGAILADDMGLGKTLQTITLLWTLLKQNPIYEAAPV 354
Query: 1501 IHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDV 1560
I +LI+CP TL+ +W E K++ + + + R+ ++++I Y+
Sbjct: 355 IKKALIVCPVTLINNWRREFRKWLGNERIGVFVF-DDKRKRLTDFTMGKAYSIMIVGYEK 413
Query: 1561 VRKDADYLGQLLW-NYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLW 1619
+R + L + + I DEGH +K ++K A++ L A R+ILSGTPIQN++ + +
Sbjct: 414 LRSVQEGLARGNGVDIVIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFF 473
Query: 1620 SLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRT 1679
+ D + PG LG+ + F + P+V +R + + KD E G E L + F+LRRT
Sbjct: 474 AAVDLVNPGVLGSFKSFIKEFEGPIVRSRQPEATEKDIEKGEARNEELRELTSQFMLRRT 533
Query: 1680 KDEVLSD-LPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQ 1717
D +L+D LP K +C + Q K+Y+ S Q
Sbjct: 534 AD-ILADYLPPKTEYVLFCKPTNTQAKIYQNVLASPVFQ 571
Score = 46 (21.3 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 127 VLEFGALLASGGQEYDIAIDNSKNPRERLARQKQNL 162
VL+ G +L+ GG+E +I +++ P+E K++L
Sbjct: 138 VLKPGVILSVGGKEVEI---DTEIPKEEYLSGKRSL 170
Score = 42 (19.8 bits), Expect = 3.9e-25, Sum P(2) = 3.9e-25
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 374 PADEPE-PLLKKMKFEDAPP 392
PAD + P +K ++ +D PP
Sbjct: 17 PADPTQKPSIKPLETDDGPP 36
Score = 38 (18.4 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 16 DTGSTQATRFTAARQ 30
DT +T+ TR T A Q
Sbjct: 46 DTSNTENTRTTLANQ 60
>UNIPROTKB|F1S4L1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:CU855584
Ensembl:ENSSSCT00000011974 Uniprot:F1S4L1
Length = 928
Score = 339 (124.4 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
Identities = 107/382 (28%), Positives = 189/382 (49%)
Query: 1446 LRRYQQEGINWLAFLKRFKLHG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
LR YQ+EG +L + + G IL DDMGLGKT+Q + +A+ + ++ IE P
Sbjct: 61 LRDYQREGAQFL-YGHFIQGRGCILGDDMGLGKTVQVISFLAAVLGKKGTREDIENNMPE 119
Query: 1505 ---------------LIICPSTLVGHWAFEIEK--FIDVSLMSTLQYVGSAQDRIALREQ 1547
LI+ P +++ +W E++ + V+++ G+ +D +R +
Sbjct: 120 FLLRTKDGRREKKLFLIVAPLSVLYNWRDELDTWGYFRVTILH-----GNKKDNELIRVK 174
Query: 1548 FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILS 1607
K + +T+Y+ +R D L L W+ I+DE H IKN K++IT +K LK R+ L+
Sbjct: 175 QRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARITEVMKALKCNVRIGLT 234
Query: 1608 GTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEAL 1667
GT +QNN+ +LW + D+ +PG LG+E F+ + P+ + + ++ G AM+ L
Sbjct: 235 GTILQNNMKELWCVMDWAVPGLLGSEIHFKKHFSDPVEHGQRHTATKRELATGRKAMQRL 294
Query: 1668 HKQVMPFLLRRTKDEVLSDLPEKIIQDR--YCDLSAVQLKLYEKFSGSQAKQEISSMVKV 1725
++ + LRRTK + LP+K +DR YC L+ Q +Y+ ++ ++S +++
Sbjct: 295 AIKMSGWFLRRTKILIKDQLPKK--EDRMVYCSLTDFQKAVYQTVLETE---DVSLILQS 349
Query: 1726 DESADKGEGN---NVSAKASTH-------VFQALQYLLKLCSHPLLVLG---DKSPESLL 1772
E G N K ++H F L L K+ +H L+ K E+L+
Sbjct: 350 SEPCPCSSGQKRRNCCYKTNSHGESVKTLYFSYLAVLQKVANHVALLQAASTSKQQETLI 409
Query: 1773 CHL-SELFPGSSDIISELHKAS 1793
+ ++F D + + A+
Sbjct: 410 KRICDQVFSRFPDFVQKSKDAA 431
Score = 40 (19.1 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 1434 DDYKLGTELKVTLRRYQQE 1452
D+ KL E KV L+R Q++
Sbjct: 6 DNEKLCEERKVPLKRLQED 24
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 345 (126.5 bits), Expect = 7.5e-25, Sum P(2) = 7.5e-25
Identities = 91/279 (32%), Positives = 151/279 (54%)
Query: 1414 LSRNAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRF-KLHGILCDD 1472
+ R E+ + E+ N + KL L L +Q+EG+ +L L R + GIL DD
Sbjct: 73 IQREDEEDEEEEEEFVNVNNSGLKLYKGLYDKLYDHQKEGVAFLYSLYRDGRKGGILADD 132
Query: 1473 MGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTL 1532
MGLGKT+Q + + S + + +N H +L++ P++L+ +W E K+ M
Sbjct: 133 MGLGKTIQVISFL-SGMYDAELAN-----H-TLLVMPTSLIKNWVREFAKWTPG--MRVK 183
Query: 1533 QYVGSAQ-DRIALREQFD-KHNVIITSYDVVRKDADYLG-----QLLWNYCILDEGHIIK 1585
++ GS++ +R E+ K VIIT+Y ++ + + LG + W+Y ILDE H IK
Sbjct: 184 EFHGSSKTERNRNLERIQRKGGVIITTYQMLINNYEQLGSNGHREFKWDYVILDEAHKIK 243
Query: 1586 NSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPG-FLGTERQFQATYGKPL 1644
S +K + + A +R++L+GTP+QNN+ ++W+LFDF G LGT + F+ Y P+
Sbjct: 244 TSSTKTAKSAHAIPAKNRVLLTGTPVQNNLREMWALFDFACQGSLLGTSKTFKTEYENPI 303
Query: 1645 VAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEV 1683
AR+ + + G+ + L + P+ LRRTK +V
Sbjct: 304 TRAREKDATPGEKALGLRISQNLTDIIKPYFLRRTKADV 342
Score = 39 (18.8 bits), Expect = 7.5e-25, Sum P(2) = 7.5e-25
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 1708 EKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742
+ + S+A ++ + V+E + EG N S K S
Sbjct: 1222 KSYETSEANGTLADEL-VEEEGEYREGKNTSDKVS 1255
Score = 37 (18.1 bits), Expect = 4.3e-23, Sum P(3) = 4.3e-23
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 1728 SADKGEGNNVSAKASTH 1744
S DK E +S + TH
Sbjct: 1272 SGDKSESYEISEASETH 1288
Score = 37 (18.1 bits), Expect = 4.3e-23, Sum P(3) = 4.3e-23
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 1699 LSAVQLKLYEKF-SGSQAKQEISS 1721
LS+VQ +Y KF S Q K+ +++
Sbjct: 387 LSSVQEDIYNKFISLDQIKELLTT 410
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 336 (123.3 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 89/279 (31%), Positives = 142/279 (50%)
Query: 1438 LGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNS 1497
+G + LR YQ G+NWLA IL D+MGLGKT+Q + + E +
Sbjct: 471 IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYG- 529
Query: 1498 IEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH------ 1551
P L++ P + + W EI+ + S M+ + Y+G R +R H
Sbjct: 530 -----PFLLVVPLSTLTSWQREIQTW--ASQMNAVVYLGDINSRNMIRTHEWMHPQTKRL 582
Query: 1552 --NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
N+++T+Y+++ KD +LG L W + +DE H +KN S + + K+ HRL+++GT
Sbjct: 583 KFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 642
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
P+QN++ +LWSL F+MP + F+ +GK E G + LHK
Sbjct: 643 PLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-------------GREYGYAS---LHK 686
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
++ PFLLRR K +V LP K+ Q ++SA+Q + Y+
Sbjct: 687 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK 725
Score = 37 (18.1 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 1037 GSNSDGSESLS 1047
GS+SDGS S S
Sbjct: 37 GSSSDGSSSQS 47
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 339 (124.4 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 89/279 (31%), Positives = 144/279 (51%)
Query: 1438 LGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNS 1497
+G + LR YQ G+NWLA IL D+MGLGKT+Q + + E +
Sbjct: 473 IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYG- 531
Query: 1498 IEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR-EQFDKH----- 1551
P L++ P + + W EI+ + S M+ + Y+G R +R ++ H
Sbjct: 532 -----PFLLVVPLSTLTSWQREIQTW--ASQMNAVVYLGDINSRNMIRTHEWTHHQTKRL 584
Query: 1552 --NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
N+++T+Y+++ KD +LG L W + +DE H +KN S + + K+ HRL+++GT
Sbjct: 585 KFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 644
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
P+QN++ +LWSL F+MP + F+ +GK E G + LHK
Sbjct: 645 PLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-------------GREYGYAS---LHK 688
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
++ PFLLRR K +V LP K+ Q ++SA+Q + Y+
Sbjct: 689 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK 727
Score = 40 (19.1 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1013 ANEIDVESLSADNAISFASKLQLLGSNSDGSESLS 1047
+++ D +S SA + S +S GS+SDGS S S
Sbjct: 17 SSQSDDDSGSASGSGSGSSS----GSSSDGSSSQS 47
Score = 39 (18.8 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 20/80 (25%), Positives = 32/80 (40%)
Query: 221 SVISKRPSARELNMLKRKAKISSKDQSKSWSEDGD---MEVP---HAQNVTTPKGSCGDP 274
S I K+ ++ + + S ++ S SED D EV H GS G P
Sbjct: 99 SAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGS-GSP 157
Query: 275 FNSNKADAVLDEDSSEHEGD 294
S +D+ +E+ + D
Sbjct: 158 SQSG-SDSESEEEREKSSCD 176
Score = 39 (18.8 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 21/79 (26%), Positives = 28/79 (35%)
Query: 182 KDEDLIVHKLNSHG-NGFDRRFYTSASAHNIQRLVSSMVPS--VISKRPSARELNMLKRK 238
KDED + S +G D + S P V S++P R + +K
Sbjct: 145 KDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKK 204
Query: 239 AKISSKDQSKSWSEDGDME 257
K Q S ED D E
Sbjct: 205 ILGQKKRQIDSSEEDDDEE 223
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 338 (124.0 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 89/279 (31%), Positives = 142/279 (50%)
Query: 1438 LGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNS 1497
+G + LR YQ G+NWLA IL D+MGLGKT+Q + + E +
Sbjct: 472 IGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYG- 530
Query: 1498 IEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH------ 1551
P L++ P + + W EI+ + S M+ + Y+G R +R H
Sbjct: 531 -----PFLLVVPLSTLTSWQREIQTW--ASQMNAVVYLGDINSRNMIRTHEWMHPQTKRL 583
Query: 1552 --NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
N+++T+Y+++ KD +LG L W + +DE H +KN S + + K+ HRL+++GT
Sbjct: 584 KFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 643
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
P+QN++ +LWSL F+MP + F+ +GK E G + LHK
Sbjct: 644 PLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-------------GREYGYAS---LHK 687
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
++ PFLLRR K +V LP K+ Q ++SA+Q + Y+
Sbjct: 688 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK 726
Score = 40 (19.1 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1013 ANEIDVESLSADNAISFASKLQLLGSNSDGSESLS 1047
+++ D +S SA + S +S GS+SDGS S S
Sbjct: 17 SSQSDDDSGSASGSGSGSSS----GSSSDGSSSQS 47
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 346 (126.9 bits), Expect = 6.1e-24, Sum P(3) = 6.1e-24
Identities = 92/275 (33%), Positives = 142/275 (51%)
Query: 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504
TLR YQ EG+NWL + IL D+MGLGKT+Q + ++ E+ P
Sbjct: 754 TLRDYQMEGLNWLVHSWMNNTNVILADEMGLGKTIQTISFLSYLFNEQDIKG------PF 807
Query: 1505 LIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDR--IALREQFDKH---------NV 1553
L++ P + + +W E K+ M+ + Y G+ Q R I L E + + NV
Sbjct: 808 LVVVPLSTIENWQREFAKWAPA--MNVIVYTGTGQSRDIIRLYEFYTTNRLGKKKLNFNV 865
Query: 1554 IITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQN 1613
++T+YD + KD + LG + W + +DE H +KNS+S + +K +RL+++GTP+QN
Sbjct: 866 LLTTYDFILKDKNTLGTIKWEFLAVDEAHRLKNSESVLHEVLKLYNTTNRLLVTGTPLQN 925
Query: 1614 NITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMP 1673
++ +LW+L +FLMP + + FQ Y D K + + A+ LH + P
Sbjct: 926 SLKELWNLLNFLMPNKFTSLKDFQDQYS-------DLKENDQIAQ--------LHSVLKP 970
Query: 1674 FLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
LLRR K +V LP K + DLS VQ K Y+
Sbjct: 971 HLLRRIKKDVEKSLPPKTERILRVDLSNVQKKYYK 1005
Score = 44 (20.5 bits), Expect = 6.1e-24, Sum P(3) = 6.1e-24
Identities = 23/100 (23%), Positives = 43/100 (43%)
Query: 204 TSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQ- 262
T+ S +R+ S S S+ S E N K+K K + ++ ++ + +P +
Sbjct: 345 TTRSGRQAKRITYSESDSEESESDSDYEPNKKKKKQTNGRKRKGNNFQKE-NWTIPATRA 403
Query: 263 --------NVTTPKGSCGDPFNSN--KADAVLDEDSSEHE 292
+ GS GD F +N + + DED S+++
Sbjct: 404 RRGKAAIDSEEESNGSDGDQFVNNVFSSSSSSDEDYSDND 443
Score = 42 (19.8 bits), Expect = 6.1e-24, Sum P(3) = 6.1e-24
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 1705 KLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLG 1764
K Y+K + +Q +S + ++ E+ + V V + +YLL L ++L
Sbjct: 1776 KYYDKNLLRKCQQYLSPIKELLENFRSLSDSKVQISREEKVSKTKKYLLSLGKEISIILD 1835
Query: 1765 DKSPESL 1771
+K ++
Sbjct: 1836 EKKSANI 1842
Score = 41 (19.5 bits), Expect = 7.7e-24, Sum P(3) = 7.7e-24
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 1722 MVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPG 1781
+ K + +KG+G T + + L K C+HP L + C L G
Sbjct: 1008 LTKNFQELNKGKGEK------TTLLNIMTELKKTCNHPYLYQNARDE----CEL-----G 1052
Query: 1782 SSDIISELHKAS 1793
+ D++ + +AS
Sbjct: 1053 AKDLLDSMIRAS 1064
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 338 (124.0 bits), Expect = 7.4e-24, Sum P(2) = 7.4e-24
Identities = 89/279 (31%), Positives = 142/279 (50%)
Query: 1438 LGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNS 1497
+G + LR YQ G+NWLA IL D+MGLGKT+Q + + E +
Sbjct: 455 IGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYG- 513
Query: 1498 IEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH------ 1551
P L++ P + + W EI+ + S M+ + Y+G R +R H
Sbjct: 514 -----PFLLVVPLSTLTSWQREIQTW--ASQMNAVVYLGDINSRNMIRTHEWMHPQTKRL 566
Query: 1552 --NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
N+++T+Y+++ KD +LG L W + +DE H +KN S + + K+ HRL+++GT
Sbjct: 567 KFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 626
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
P+QN++ +LWSL F+MP + F+ +GK E G + LHK
Sbjct: 627 PLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-------------GREYGYAS---LHK 670
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
++ PFLLRR K +V LP K+ Q ++SA+Q + Y+
Sbjct: 671 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK 709
Score = 39 (18.8 bits), Expect = 7.4e-24, Sum P(2) = 7.4e-24
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 1014 NEIDVESLSADNAISFASKLQLLGSNSDGSESLS 1047
++ D +S SA + S +S GS+SDGS S S
Sbjct: 1 SQSDDDSGSASGSGSGSSS----GSSSDGSSSQS 30
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 334 (122.6 bits), Expect = 8.9e-24, Sum P(3) = 8.9e-24
Identities = 89/279 (31%), Positives = 144/279 (51%)
Query: 1438 LGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNS 1497
+G+E + LR YQ EG+NWLA IL D+MGLGKT+Q + ++ + +
Sbjct: 479 IGSE-NLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYG- 536
Query: 1498 IEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE------QFD-- 1549
P L++ P + + W E E + ++ + Y+G R +RE Q
Sbjct: 537 -----PFLVVVPLSTLTSWQREFEVWAPE--INVVVYIGDLMSRNMIREYEWIHSQSKRL 589
Query: 1550 KHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
K N +IT+Y+++ KD LG + W + +DE H +KN S + + K+ HRL+++GT
Sbjct: 590 KFNALITTYEILLKDKAVLGSISWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 649
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
P+QN++ +LWSL F+MP F+ +GK R++ ++LHK
Sbjct: 650 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK----GREN------------GYQSLHK 693
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
+ PFLLRR K +V LP K+ Q ++SA+Q + Y+
Sbjct: 694 VLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYK 732
Score = 50 (22.7 bits), Expect = 8.9e-24, Sum P(3) = 8.9e-24
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 468 FLNSETLKNLPENSELMNWLKLARHSWQKN 497
++ SE L+ E +NWL HSW KN
Sbjct: 478 YIGSENLELRDYQLEGLNWLA---HSWCKN 504
Score = 45 (20.9 bits), Expect = 8.9e-24, Sum P(3) = 8.9e-24
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 224 SKRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPK 268
++ P R +KRK K + + EDG + A++ PK
Sbjct: 129 NESPKRRGQKQVKRKKKWKREISGEEEDEDGGDQGTSAESEPEPK 173
Score = 42 (19.8 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 197 GFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKAKISSKDQSKSWSE 252
G + +++AS+H+ S + S+ E + SS+ QS+S SE
Sbjct: 9 GEEGSVHSNASSHSASEEASGSDSASQSESEQGSEQGSESNSSSESSESQSESESE 64
Score = 42 (19.8 bits), Expect = 8.0e-22, Sum P(4) = 8.0e-22
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 967 SDPTYPTKDSLLPYAELS 984
+DP Y K LPYAE S
Sbjct: 411 NDPEYLCKWMGLPYAECS 428
Score = 38 (18.4 bits), Expect = 8.0e-22, Sum P(4) = 8.0e-22
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 835 FKAAAKMRAVKLENDSSGSVDLPQERNGDTSTN 867
++ ++ AVK ++G D P TS+N
Sbjct: 380 YQIVERVIAVKTSKSAAGHADFPANSR-KTSSN 411
>FB|FBgn0002989 [details] [associations]
symbol:okr "okra" species:7227 "Drosophila melanogaster"
[GO:0046843 "dorsal appendage formation" evidence=IMP] [GO:0048477
"oogenesis" evidence=IGI;IMP;TAS] [GO:0006302 "double-strand break
repair" evidence=IMP;TAS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=TAS] [GO:0006417 "regulation of translation" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0030261 "chromosome condensation" evidence=TAS] [GO:0006281
"DNA repair" evidence=NAS] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0045003
"double-strand break repair via synthesis-dependent strand
annealing" evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006417 GO:GO:0051301 GO:GO:0007067 EMBL:AE014134
GO:GO:0003677 GO:GO:0010212 GO:GO:0006338 GO:GO:0004386
GO:GO:0030261 GO:GO:0008298 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0046843 GO:GO:0007131
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG EMBL:Y10229
EMBL:AF069779 EMBL:AF069780 EMBL:AY069599 EMBL:FJ219215
EMBL:FJ219218 EMBL:FJ219219 EMBL:FJ219220 EMBL:FJ219221
EMBL:FJ219222 EMBL:FJ219223 EMBL:FJ219224 EMBL:FJ219225
EMBL:FJ219226 EMBL:FJ219227 EMBL:FJ219228 EMBL:FJ219229
EMBL:FJ219230 EMBL:FJ219231 EMBL:FJ219232 EMBL:FJ219233
EMBL:FJ219234 EMBL:FJ219235 EMBL:FJ219236 EMBL:FJ219237
EMBL:FJ219238 EMBL:FJ219239 EMBL:FJ219240 EMBL:FJ219241
EMBL:FJ219242 EMBL:FJ219243 EMBL:FJ219244 EMBL:FJ219245
EMBL:FJ219246 EMBL:FJ219247 RefSeq:NP_476661.1 UniGene:Dm.19774
ProteinModelPortal:O76460 SMR:O76460 IntAct:O76460 MINT:MINT-807919
STRING:O76460 PRIDE:O76460 EnsemblMetazoa:FBtr0077673 GeneID:33507
KEGG:dme:Dmel_CG3736 UCSC:CG3736-RA CTD:33507 FlyBase:FBgn0002989
InParanoid:O76460 PhylomeDB:O76460 GenomeRNAi:33507 NextBio:783944
Bgee:O76460 Uniprot:O76460
Length = 784
Score = 328 (120.5 bits), Expect = 9.2e-24, Sum P(2) = 9.2e-24
Identities = 99/328 (30%), Positives = 166/328 (50%)
Query: 1446 LRRYQQEGINWLAFL---KRFKLHG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEI 1501
LR +Q+EG+ ++ KR +G I+ D+MGLGKTLQ +V + + R+ I
Sbjct: 156 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLL--RQGPECKPTI 213
Query: 1502 HPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHN------VII 1555
+ ++++ PS+LV +W E K++ L+ G+ ++ I EQF + V++
Sbjct: 214 NKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVLL 273
Query: 1556 TSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNI 1615
SY+ R A+ L + I DEGH +KNS + A+ LK R++LSGTPIQN++
Sbjct: 274 ISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDL 333
Query: 1616 TDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675
T+ +SL +F+ P LGT F+ + ++ +++ + ++ + + + L V +
Sbjct: 334 TEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCI 393
Query: 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGS-QAKQEISSMVKVDESADKGEG 1734
+RRT + LP K L+A+QL+LY F S Q ++ + AD E
Sbjct: 394 IRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSL---------ADCNE- 443
Query: 1735 NNVSAKASTHVFQALQYLLKLCSHPLLV 1762
KAS + L K+CSHP L+
Sbjct: 444 -----KASLTALADITTLKKICSHPDLI 466
Score = 37 (18.1 bits), Expect = 9.2e-24, Sum P(2) = 9.2e-24
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 147 NSKNPRERLARQKQNLKRRLG 167
N ++ ++ L R+++ +RRLG
Sbjct: 29 NKRSCQQELEREQELDRRRLG 49
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 336 (123.3 bits), Expect = 9.6e-24, Sum P(2) = 9.6e-24
Identities = 89/279 (31%), Positives = 142/279 (50%)
Query: 1438 LGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNS 1497
+G + LR YQ G+NWLA IL D+MGLGKT+Q + + E +
Sbjct: 467 IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYG- 525
Query: 1498 IEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH------ 1551
P L++ P + + W EI+ + S M+ + Y+G R +R H
Sbjct: 526 -----PFLLVVPLSTLTSWQREIQTW--ASQMNAVVYLGDINSRNMIRTHEWMHPQTKRL 578
Query: 1552 --NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
N+++T+Y+++ KD +LG L W + +DE H +KN S + + K+ HRL+++GT
Sbjct: 579 KFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 638
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
P+QN++ +LWSL F+MP + F+ +GK E G + LHK
Sbjct: 639 PLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-------------GREYGYAS---LHK 682
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
++ PFLLRR K +V LP K+ Q ++SA+Q + Y+
Sbjct: 683 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK 721
Score = 40 (19.1 bits), Expect = 9.6e-24, Sum P(2) = 9.6e-24
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1013 ANEIDVESLSADNAISFASKLQLLGSNSDGSESLS 1047
+++ D +S SA + S +S GS+SDGS S S
Sbjct: 17 SSQSDDDSGSASGSGSGSSS----GSSSDGSSSQS 47
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 336 (123.3 bits), Expect = 9.7e-24, Sum P(2) = 9.7e-24
Identities = 89/279 (31%), Positives = 142/279 (50%)
Query: 1438 LGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNS 1497
+G + LR YQ G+NWLA IL D+MGLGKT+Q + + E +
Sbjct: 467 IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYG- 525
Query: 1498 IEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH------ 1551
P L++ P + + W EI+ + S M+ + Y+G R +R H
Sbjct: 526 -----PFLLVVPLSTLTSWQREIQTW--ASQMNAVVYLGDINSRNMIRTHEWMHPQTKRL 578
Query: 1552 --NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
N+++T+Y+++ KD +LG L W + +DE H +KN S + + K+ HRL+++GT
Sbjct: 579 KFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 638
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
P+QN++ +LWSL F+MP + F+ +GK E G + LHK
Sbjct: 639 PLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-------------GREYGYAS---LHK 682
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
++ PFLLRR K +V LP K+ Q ++SA+Q + Y+
Sbjct: 683 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK 721
Score = 40 (19.1 bits), Expect = 9.7e-24, Sum P(2) = 9.7e-24
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1013 ANEIDVESLSADNAISFASKLQLLGSNSDGSESLS 1047
+++ D +S SA + S +S GS+SDGS S S
Sbjct: 17 SSQSDDDSGSASGSGSGSSS----GSSSDGSSSQS 47
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 336 (123.3 bits), Expect = 9.9e-24, Sum P(2) = 9.9e-24
Identities = 89/279 (31%), Positives = 142/279 (50%)
Query: 1438 LGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNS 1497
+G + LR YQ G+NWLA IL D+MGLGKT+Q + + E +
Sbjct: 485 IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYG- 543
Query: 1498 IEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH------ 1551
P L++ P + + W EI+ + S M+ + Y+G R +R H
Sbjct: 544 -----PFLLVVPLSTLTSWQREIQTW--ASQMNAVVYLGDINSRNMIRTHEWMHPQTKRL 596
Query: 1552 --NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
N+++T+Y+++ KD +LG L W + +DE H +KN S + + K+ HRL+++GT
Sbjct: 597 KFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 656
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
P+QN++ +LWSL F+MP + F+ +GK E G + LHK
Sbjct: 657 PLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-------------GREYGYAS---LHK 700
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
++ PFLLRR K +V LP K+ Q ++SA+Q + Y+
Sbjct: 701 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK 739
Score = 40 (19.1 bits), Expect = 9.9e-24, Sum P(2) = 9.9e-24
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1013 ANEIDVESLSADNAISFASKLQLLGSNSDGSESLS 1047
+++ D +S SA + S +S GS+SDGS S S
Sbjct: 17 SSQSDDDSGSASGSGSGSSS----GSSSDGSSSQS 47
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 336 (123.3 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 89/279 (31%), Positives = 142/279 (50%)
Query: 1438 LGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNS 1497
+G + LR YQ G+NWLA IL D+MGLGKT+Q + + E +
Sbjct: 468 IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYG- 526
Query: 1498 IEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH------ 1551
P L++ P + + W EI+ + S M+ + Y+G R +R H
Sbjct: 527 -----PFLLVVPLSTLTSWQREIQTW--ASQMNAVVYLGDINSRNMIRTHEWMHPQTKRL 579
Query: 1552 --NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGT 1609
N+++T+Y+++ KD +LG L W + +DE H +KN S + + K+ HRL+++GT
Sbjct: 580 KFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 639
Query: 1610 PIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHK 1669
P+QN++ +LWSL F+MP + F+ +GK E G + LHK
Sbjct: 640 PLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGK-------------GREYGYAS---LHK 683
Query: 1670 QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708
++ PFLLRR K +V LP K+ Q ++SA+Q + Y+
Sbjct: 684 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYK 722
Score = 39 (18.8 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 1014 NEIDVESLSADNAISFASKLQLLGSNSDGSESLS 1047
++ D +S SA + S +S GS+SDGS S S
Sbjct: 19 SQSDDDSGSASGSGSGSSS----GSSSDGSSSQS 48
>GENEDB_PFALCIPARUM|PF08_0126 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54,
putative" species:5833 "Plasmodium falciparum" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 314 (115.6 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 82/273 (30%), Positives = 140/273 (51%)
Query: 1446 LRRYQQEGINW----LAFLKRFKLHG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEE 1500
LR +Q+EG+ + L +K K+ G IL DDMGLGKTLQ+ ++ + + ++ +
Sbjct: 133 LREHQREGVQFVFECLMNIKDDKISGCILADDMGLGKTLQSITVLYTLL--KQGFHKKCA 190
Query: 1501 IHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD---KHNVIITS 1557
+ LI+CP++L+ +W EI K+I T + + ++ E F + V+I S
Sbjct: 191 VRRCLILCPASLINNWNDEISKWIPNRCNVTCVNDNAKEKIVSKLEGFKYDIQSTVLICS 250
Query: 1558 YDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITD 1617
Y+ R + ++L + + I DE H +KN K+K ++ L A RL+LSGTPIQN++ +
Sbjct: 251 YECFRINNEFLDKSSIDMIICDEAHRLKNDKTKTYTSIYNLTAKKRLLLSGTPIQNDLGE 310
Query: 1618 LWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLR 1677
++L P F+ + P++ RD + K+ E + L F+LR
Sbjct: 311 FYALISLCNPDLFDDINLFRKKFANPILIGRDKDATEKEQEIASERLTELSNITNKFILR 370
Query: 1678 RTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKF 1710
RT + + LP K + + + L+ +Q LY F
Sbjct: 371 RTNNLLSKVLPVKYLINIFIKLNPIQEALYVLF 403
WARNING: HSPs involving 275 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1806 1720 0.00089 125 3 11 22 0.40 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 525
No. of states in DFA: 635 (67 KB)
Total size of DFA: 667 KB (2291 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 146.41u 0.19s 146.60t Elapsed: 00:00:10
Total cpu time: 146.52u 0.19s 146.71t Elapsed: 00:00:11
Start: Tue May 21 01:36:01 2013 End: Tue May 21 01:36:12 2013
WARNINGS ISSUED: 2