Query 000237
Match_columns 1806
No_of_seqs 451 out of 2554
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 00:46:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0392 SNF2 family DNA-depend 100.0 3E-241 6E-246 2206.8 83.5 1304 225-1805 4-1327(1549)
2 PF12054 DUF3535: Domain of un 100.0 1.4E-87 3E-92 820.9 33.0 416 783-1235 1-441 (441)
3 KOG0387 Transcription-coupled 100.0 2.2E-61 4.7E-66 588.1 20.4 328 1434-1798 194-535 (923)
4 KOG0385 Chromatin remodeling c 100.0 8.9E-57 1.9E-61 544.6 24.8 314 1438-1799 159-477 (971)
5 KOG0391 SNF2 family DNA-depend 100.0 5.8E-55 1.3E-59 537.1 17.6 300 1435-1764 605-907 (1958)
6 KOG0388 SNF2 family DNA-depend 100.0 6.3E-52 1.4E-56 494.5 16.9 294 1436-1768 558-860 (1185)
7 KOG0389 SNF2 family DNA-depend 100.0 5.4E-51 1.2E-55 496.6 19.9 308 1444-1780 398-713 (941)
8 PLN03142 Probable chromatin-re 100.0 2.2E-49 4.8E-54 516.9 30.0 291 1437-1765 161-454 (1033)
9 KOG0384 Chromodomain-helicase 100.0 3E-49 6.6E-54 497.7 18.9 311 1444-1799 369-689 (1373)
10 KOG0386 Chromatin remodeling c 100.0 1.6E-49 3.6E-54 492.6 14.9 297 1442-1763 391-690 (1157)
11 PF00176 SNF2_N: SNF2 family N 100.0 5.6E-44 1.2E-48 414.3 26.3 285 1449-1762 1-299 (299)
12 KOG0390 DNA repair protein, SN 100.0 1.9E-43 4.2E-48 443.8 26.5 339 1436-1799 229-584 (776)
13 KOG4439 RNA polymerase II tran 100.0 6E-43 1.3E-47 421.6 19.6 319 1435-1771 315-676 (901)
14 KOG1015 Transcription regulato 100.0 5.6E-42 1.2E-46 418.0 21.9 310 1434-1763 657-998 (1567)
15 KOG1002 Nucleotide excision re 100.0 2.3E-40 5E-45 385.8 17.0 301 1434-1765 173-524 (791)
16 COG0553 HepA Superfamily II DN 100.0 8.7E-39 1.9E-43 421.8 19.7 309 1440-1765 333-661 (866)
17 KOG1016 Predicted DNA helicase 100.0 5.2E-36 1.1E-40 360.3 16.8 311 1429-1763 238-608 (1387)
18 KOG0383 Predicted helicase [Ge 100.0 2.3E-32 5E-37 342.0 4.3 280 1444-1764 294-595 (696)
19 KOG1001 Helicase-like transcri 100.0 1.6E-30 3.4E-35 329.8 16.5 293 1448-1768 135-433 (674)
20 KOG1000 Chromatin remodeling p 100.0 1.3E-30 2.7E-35 306.1 13.8 250 1438-1712 191-444 (689)
21 PRK04914 ATP-dependent helicas 100.0 3.4E-28 7.4E-33 318.2 21.3 255 1441-1708 148-448 (956)
22 KOG0298 DEAD box-containing he 99.9 4.4E-25 9.6E-30 281.6 11.6 283 1466-1764 376-693 (1394)
23 TIGR00603 rad25 DNA repair hel 99.8 4.9E-20 1.1E-24 235.4 20.5 163 1441-1625 251-424 (732)
24 COG1061 SSL2 DNA or RNA helica 99.6 5.6E-14 1.2E-18 174.7 18.3 207 1440-1714 31-243 (442)
25 PF04851 ResIII: Type III rest 99.5 9.4E-14 2E-18 149.9 15.2 152 1444-1611 2-183 (184)
26 PRK13766 Hef nuclease; Provisi 99.5 3.9E-13 8.4E-18 178.0 20.5 168 1444-1626 14-187 (773)
27 PHA02558 uvsW UvsW helicase; P 99.4 5.3E-13 1.1E-17 168.6 13.5 148 1443-1613 112-262 (501)
28 smart00487 DEXDc DEAD-like hel 99.4 2.8E-12 6.1E-17 138.1 15.3 162 1443-1615 6-175 (201)
29 cd00046 DEXDc DEAD-like helica 99.4 4.5E-12 9.7E-17 128.6 12.4 137 1466-1610 2-144 (144)
30 KOG1123 RNA polymerase II tran 99.3 3.9E-12 8.4E-17 151.6 8.4 170 1434-1625 291-471 (776)
31 PRK11448 hsdR type I restricti 99.2 1.2E-10 2.6E-15 157.6 15.1 162 1443-1614 411-598 (1123)
32 cd00268 DEADc DEAD-box helicas 99.1 2.5E-09 5.4E-14 118.9 15.9 159 1445-1611 21-185 (203)
33 PF00270 DEAD: DEAD/DEAH box h 99.1 1.7E-09 3.8E-14 115.9 13.9 158 1448-1617 2-168 (169)
34 TIGR00348 hsdR type I site-spe 99.1 1.1E-09 2.4E-14 142.9 14.8 156 1442-1613 235-405 (667)
35 COG1111 MPH1 ERCC4-like helica 99.0 1.1E-08 2.3E-13 124.7 18.9 209 1443-1711 13-229 (542)
36 TIGR00643 recG ATP-dependent D 98.9 1.4E-08 2.9E-13 132.2 16.6 158 1444-1615 234-401 (630)
37 COG4096 HsdR Type I site-speci 98.9 5.7E-09 1.2E-13 132.8 11.3 160 1434-1612 154-322 (875)
38 KOG0354 DEAD-box like helicase 98.8 3.3E-08 7.2E-13 126.3 13.5 166 1443-1623 60-233 (746)
39 PRK10917 ATP-dependent DNA hel 98.8 5E-08 1.1E-12 128.0 15.1 157 1443-1614 259-423 (681)
40 PRK11192 ATP-dependent RNA hel 98.8 8.1E-08 1.8E-12 119.7 15.7 166 1445-1618 23-196 (434)
41 PRK10590 ATP-dependent RNA hel 98.8 1E-07 2.3E-12 119.7 16.6 163 1445-1611 23-191 (456)
42 TIGR00580 mfd transcription-re 98.7 1.3E-07 2.8E-12 126.7 16.2 160 1442-1616 448-615 (926)
43 PTZ00424 helicase 45; Provisio 98.7 1.5E-07 3.3E-12 115.6 14.9 157 1445-1611 50-212 (401)
44 PRK10689 transcription-repair 98.7 1.7E-07 3.7E-12 128.0 16.4 159 1442-1615 597-763 (1147)
45 PRK11776 ATP-dependent RNA hel 98.7 2.2E-07 4.9E-12 116.7 15.8 157 1445-1611 26-189 (460)
46 TIGR00614 recQ_fam ATP-depende 98.7 1.8E-07 3.9E-12 118.1 14.9 165 1444-1628 10-190 (470)
47 PF13872 AAA_34: P-loop contai 98.7 4.7E-07 1E-11 106.5 17.2 239 1437-1709 27-302 (303)
48 PLN00206 DEAD-box ATP-dependen 98.6 3.4E-07 7.3E-12 116.9 16.3 164 1444-1611 142-311 (518)
49 PRK01172 ski2-like helicase; P 98.6 4.5E-07 9.9E-12 119.2 16.4 156 1445-1619 22-186 (674)
50 PRK02362 ski2-like helicase; P 98.6 4.1E-07 8.8E-12 120.7 15.9 158 1445-1620 23-189 (737)
51 PRK04837 ATP-dependent RNA hel 98.6 5.1E-07 1.1E-11 112.4 14.9 164 1445-1612 30-202 (423)
52 PRK13767 ATP-dependent helicas 98.5 1.2E-06 2.6E-11 118.0 18.2 160 1445-1610 32-217 (876)
53 PRK01297 ATP-dependent RNA hel 98.5 8.2E-07 1.8E-11 112.2 15.6 163 1445-1611 109-281 (475)
54 PRK11634 ATP-dependent RNA hel 98.5 9E-07 2E-11 115.2 16.3 156 1445-1610 28-190 (629)
55 PTZ00110 helicase; Provisional 98.5 9.2E-07 2E-11 113.6 15.9 160 1445-1610 152-318 (545)
56 PRK04537 ATP-dependent RNA hel 98.5 1.4E-06 3E-11 112.5 16.8 164 1445-1612 31-204 (572)
57 COG1204 Superfamily II helicas 98.5 4.2E-07 9E-12 119.7 12.3 159 1445-1620 31-198 (766)
58 PRK00254 ski2-like helicase; P 98.5 1.2E-06 2.5E-11 116.2 16.4 158 1444-1620 22-187 (720)
59 PRK11057 ATP-dependent DNA hel 98.5 1.1E-06 2.5E-11 114.1 15.8 163 1445-1627 25-201 (607)
60 TIGR01389 recQ ATP-dependent D 98.5 1.4E-06 2.9E-11 113.1 15.6 162 1445-1626 13-188 (591)
61 PRK09401 reverse gyrase; Revie 98.5 1.5E-06 3.3E-11 119.1 16.8 130 1443-1585 78-214 (1176)
62 COG4889 Predicted helicase [Ge 98.4 6.3E-07 1.4E-11 113.2 8.7 165 1436-1611 152-351 (1518)
63 COG1200 RecG RecG-like helicas 98.4 2.4E-06 5.2E-11 108.5 13.5 160 1442-1616 259-427 (677)
64 COG1205 Distinct helicase fami 98.3 3.6E-06 7.8E-11 112.4 15.1 154 1446-1610 71-242 (851)
65 TIGR03817 DECH_helic helicase/ 98.3 8.2E-06 1.8E-10 108.2 16.6 151 1445-1610 36-204 (742)
66 PRK05580 primosome assembly pr 98.3 7.9E-06 1.7E-10 107.5 15.9 153 1444-1614 143-308 (679)
67 TIGR03158 cas3_cyano CRISPR-as 98.2 1.5E-05 3.1E-10 97.6 15.6 150 1449-1612 1-193 (357)
68 PLN03137 ATP-dependent DNA hel 98.0 3E-05 6.5E-10 104.1 13.7 163 1444-1626 459-642 (1195)
69 TIGR01054 rgy reverse gyrase. 98.0 3.3E-05 7.2E-10 106.5 14.7 130 1443-1586 76-213 (1171)
70 COG1201 Lhr Lhr-like helicases 98.0 3.7E-05 8E-10 101.1 14.3 174 1443-1628 20-206 (814)
71 TIGR00595 priA primosomal prot 97.9 6.1E-05 1.3E-09 96.2 12.8 128 1469-1613 2-142 (505)
72 TIGR01587 cas3_core CRISPR-ass 97.9 6.8E-05 1.5E-09 91.2 12.7 134 1468-1611 3-166 (358)
73 TIGR03714 secA2 accessory Sec 97.9 6.9E-05 1.5E-09 98.2 13.1 153 1445-1623 68-233 (762)
74 COG1197 Mfd Transcription-repa 97.9 0.00012 2.6E-09 98.0 14.4 160 1442-1616 591-758 (1139)
75 KOG2171 Karyopherin (importin) 97.8 0.0046 1E-07 82.6 28.4 92 533-624 329-421 (1075)
76 COG0610 Type I site-specific r 97.8 0.0001 2.2E-09 100.1 13.5 143 1463-1617 272-420 (962)
77 PF07652 Flavi_DEAD: Flaviviru 97.7 0.00027 5.9E-09 75.7 11.5 126 1468-1612 8-138 (148)
78 PHA02653 RNA helicase NPH-II; 97.6 0.00048 1E-08 90.4 13.5 163 1442-1611 157-332 (675)
79 PRK14701 reverse gyrase; Provi 97.6 0.00039 8.4E-09 98.4 13.4 128 1445-1585 79-213 (1638)
80 TIGR02621 cas3_GSU0051 CRISPR- 97.6 0.00044 9.6E-09 91.7 13.0 155 1446-1612 16-217 (844)
81 PRK09751 putative ATP-dependen 97.5 0.00066 1.4E-08 94.8 13.5 147 1470-1620 2-177 (1490)
82 COG1110 Reverse gyrase [DNA re 97.4 0.0012 2.6E-08 86.9 13.6 128 1444-1584 81-215 (1187)
83 PRK09694 helicase Cas3; Provis 97.4 0.0015 3.2E-08 88.0 14.9 164 1444-1618 285-488 (878)
84 KOG2023 Nuclear transport rece 97.4 0.1 2.2E-06 66.8 29.2 319 587-970 85-446 (885)
85 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.00034 7.3E-09 70.6 6.6 93 567-663 2-95 (97)
86 KOG0331 ATP-dependent RNA heli 97.3 0.0011 2.5E-08 83.6 12.1 146 1463-1609 127-280 (519)
87 KOG0350 DEAD-box ATP-dependent 97.3 0.00072 1.6E-08 83.2 9.9 140 1443-1587 157-310 (620)
88 KOG0952 DNA/RNA helicase MER3/ 97.3 0.0011 2.4E-08 87.2 11.8 172 1461-1640 123-310 (1230)
89 KOG0330 ATP-dependent RNA heli 97.3 0.0013 2.8E-08 79.1 11.5 157 1445-1612 83-247 (476)
90 smart00489 DEXDc3 DEAD-like he 97.3 0.0026 5.6E-08 76.1 14.0 44 1445-1488 8-51 (289)
91 smart00488 DEXDc2 DEAD-like he 97.3 0.0026 5.6E-08 76.1 14.0 44 1445-1488 8-51 (289)
92 PRK15483 type III restriction- 97.3 0.0026 5.7E-08 85.3 14.9 167 1466-1645 61-277 (986)
93 PF12348 CLASP_N: CLASP N term 97.2 0.00077 1.7E-08 77.0 8.5 139 1260-1401 67-211 (228)
94 TIGR01407 dinG_rel DnaQ family 97.1 0.0031 6.6E-08 85.7 13.1 70 1444-1522 244-315 (850)
95 PRK09200 preprotein translocas 97.1 0.0045 9.8E-08 82.3 13.9 137 1445-1610 76-226 (790)
96 COG4098 comFA Superfamily II D 97.1 0.0077 1.7E-07 71.8 14.1 149 1441-1612 93-245 (441)
97 COG4581 Superfamily II RNA hel 97.0 0.0025 5.5E-08 85.7 11.5 150 1441-1610 115-270 (1041)
98 PF13513 HEAT_EZ: HEAT-like re 97.0 0.00034 7.3E-09 62.6 1.8 52 565-616 1-52 (55)
99 KOG0392 SNF2 family DNA-depend 96.9 0.00076 1.6E-08 89.5 4.1 73 508-581 204-282 (1549)
100 PRK12899 secA preprotein trans 96.8 0.011 2.4E-07 79.0 14.6 147 1446-1623 93-253 (970)
101 TIGR03117 cas_csf4 CRISPR-asso 96.8 0.009 2E-07 78.1 13.8 68 1450-1524 2-70 (636)
102 KOG0335 ATP-dependent RNA heli 96.8 0.0029 6.4E-08 78.9 8.2 138 1445-1586 96-240 (482)
103 KOG2171 Karyopherin (importin) 96.7 4.9 0.00011 55.3 41.1 611 524-1365 91-765 (1075)
104 KOG0947 Cytoplasmic exosomal R 96.7 0.0038 8.1E-08 81.6 8.5 120 1442-1587 294-418 (1248)
105 COG0513 SrmB Superfamily II DN 96.7 0.019 4.1E-07 74.0 14.6 164 1445-1618 51-222 (513)
106 COG1202 Superfamily II helicas 96.6 0.01 2.2E-07 74.4 10.6 179 1432-1623 195-393 (830)
107 COG0514 RecQ Superfamily II DN 96.6 0.013 2.7E-07 75.6 11.9 165 1444-1628 16-194 (590)
108 PRK12898 secA preprotein trans 96.4 0.022 4.8E-07 74.6 13.2 137 1443-1610 101-269 (656)
109 TIGR01970 DEAH_box_HrpB ATP-de 96.4 0.015 3.3E-07 78.3 12.0 139 1462-1615 15-161 (819)
110 PRK11664 ATP-dependent RNA hel 96.4 0.014 3E-07 78.8 11.3 139 1463-1616 19-165 (812)
111 TIGR00963 secA preprotein tran 96.4 0.013 2.9E-07 77.2 10.6 126 1445-1585 54-189 (745)
112 KOG0343 RNA Helicase [RNA proc 96.2 0.021 4.6E-07 71.4 10.6 174 1432-1612 70-258 (758)
113 TIGR00604 rad3 DNA repair heli 96.2 0.019 4.2E-07 76.6 11.3 46 1445-1490 10-55 (705)
114 KOG1824 TATA-binding protein-i 96.2 1.4 3E-05 58.9 26.6 89 529-617 273-398 (1233)
115 KOG1241 Karyopherin (importin) 96.2 7.7 0.00017 51.4 35.2 631 529-1367 106-780 (859)
116 PF13401 AAA_22: AAA domain; P 96.1 0.02 4.2E-07 59.3 8.5 119 1464-1610 4-125 (131)
117 PF13086 AAA_11: AAA domain; P 96.1 0.043 9.4E-07 61.7 12.0 73 1445-1522 1-75 (236)
118 KOG1824 TATA-binding protein-i 96.1 9 0.0002 51.8 33.5 200 1097-1355 518-722 (1233)
119 COG1203 CRISPR-associated heli 96.1 0.018 3.9E-07 77.2 10.1 164 1443-1612 193-382 (733)
120 PRK07246 bifunctional ATP-depe 96.0 0.05 1.1E-06 73.8 13.5 71 1444-1524 244-316 (820)
121 PRK13104 secA preprotein trans 95.8 0.062 1.4E-06 72.1 13.0 146 1445-1623 82-240 (896)
122 KOG0948 Nuclear exosomal RNA h 95.7 0.027 5.9E-07 72.5 8.7 122 1441-1588 125-251 (1041)
123 PF02562 PhoH: PhoH-like prote 95.6 0.035 7.5E-07 63.5 8.2 145 1446-1616 5-161 (205)
124 KOG0338 ATP-dependent RNA heli 95.5 0.063 1.4E-06 66.9 10.5 147 1468-1621 222-378 (691)
125 PRK08074 bifunctional ATP-depe 95.3 0.17 3.7E-06 69.8 14.6 38 1444-1481 256-293 (928)
126 KOG0951 RNA helicase BRR2, DEA 95.2 0.043 9.4E-07 74.0 8.3 152 1464-1620 325-492 (1674)
127 KOG1513 Nuclear helicase MOP-3 95.2 0.11 2.5E-06 67.1 11.5 165 1438-1611 257-455 (1300)
128 PRK10536 hypothetical protein; 95.1 0.084 1.8E-06 62.2 9.4 148 1446-1615 60-217 (262)
129 KOG0342 ATP-dependent RNA heli 95.0 0.11 2.4E-06 64.8 10.6 160 1445-1610 104-271 (543)
130 KOG0347 RNA helicase [RNA proc 95.0 0.083 1.8E-06 66.4 9.4 143 1468-1610 223-386 (731)
131 KOG0213 Splicing factor 3b, su 94.8 0.058 1.3E-06 69.2 7.6 112 528-645 491-606 (1172)
132 KOG0345 ATP-dependent RNA heli 94.8 0.35 7.7E-06 60.3 13.7 137 1445-1586 28-171 (567)
133 COG1198 PriA Primosomal protei 94.7 0.18 4E-06 67.0 12.1 152 1443-1611 196-360 (730)
134 KOG1131 RNA polymerase II tran 94.7 0.12 2.5E-06 64.7 9.5 61 1445-1511 16-76 (755)
135 KOG1132 Helicase of the DEAD s 94.6 0.15 3.3E-06 67.3 10.7 88 1437-1524 13-134 (945)
136 KOG0348 ATP-dependent RNA heli 94.6 0.13 2.8E-06 64.7 9.5 159 1448-1611 162-342 (708)
137 PRK12326 preprotein translocas 94.6 0.26 5.7E-06 65.0 12.8 154 1443-1627 76-243 (764)
138 PF13513 HEAT_EZ: HEAT-like re 94.5 0.031 6.8E-07 50.0 3.1 51 21-71 1-55 (55)
139 PF02985 HEAT: HEAT repeat; I 94.5 0.047 1E-06 43.8 3.7 30 1288-1317 1-30 (31)
140 PRK13103 secA preprotein trans 94.4 0.2 4.3E-06 67.4 11.4 133 1445-1610 82-229 (913)
141 PF07517 SecA_DEAD: SecA DEAD- 94.2 0.32 6.9E-06 57.9 11.5 123 1442-1584 74-209 (266)
142 PRK12904 preprotein translocas 94.1 0.27 5.9E-06 66.1 11.8 147 1444-1623 80-239 (830)
143 PF12755 Vac14_Fab1_bd: Vacuol 94.1 0.16 3.4E-06 51.6 7.5 88 1266-1355 6-96 (97)
144 PF13604 AAA_30: AAA domain; P 94.1 0.55 1.2E-05 53.3 12.6 127 1445-1614 1-134 (196)
145 KOG0353 ATP-dependent DNA heli 94.1 0.4 8.8E-06 57.7 11.7 184 1445-1647 94-314 (695)
146 PRK13107 preprotein translocas 94.0 0.26 5.5E-06 66.4 11.0 146 1445-1623 82-240 (908)
147 KOG1803 DNA helicase [Replicat 93.8 0.12 2.7E-06 65.9 7.4 66 1441-1518 181-247 (649)
148 KOG0339 ATP-dependent RNA heli 93.6 0.51 1.1E-05 59.2 11.9 135 1471-1610 267-411 (731)
149 PRK14873 primosome assembly pr 93.6 0.22 4.9E-06 66.0 9.6 122 1474-1611 170-304 (665)
150 COG3587 Restriction endonuclea 93.6 0.31 6.8E-06 64.3 10.6 134 1466-1610 76-242 (985)
151 COG5181 HSH155 U2 snRNP splice 93.4 0.12 2.5E-06 65.5 6.0 113 527-645 295-411 (975)
152 TIGR00376 DNA helicase, putati 93.3 1.2 2.6E-05 59.3 15.6 68 1443-1522 155-223 (637)
153 TIGR01967 DEAH_box_HrpA ATP-de 93.2 0.24 5.3E-06 69.4 9.4 136 1462-1611 80-222 (1283)
154 PRK11131 ATP-dependent RNA hel 93.2 0.29 6.4E-06 68.5 10.0 129 1463-1611 88-229 (1294)
155 COG1199 DinG Rad3-related DNA 92.7 0.58 1.3E-05 62.2 11.6 47 1443-1489 13-59 (654)
156 PF13646 HEAT_2: HEAT repeats; 92.4 0.29 6.3E-06 47.3 6.1 58 8-71 1-58 (88)
157 KOG1805 DNA replication helica 92.1 0.85 1.8E-05 61.2 11.5 147 1442-1612 666-831 (1100)
158 PF11496 HDA2-3: Class II hist 92.1 0.24 5.3E-06 59.8 6.2 98 1692-1799 5-102 (297)
159 COG0556 UvrB Helicase subunit 92.1 0.38 8.3E-06 60.8 8.0 72 1449-1532 16-89 (663)
160 PRK13800 putative oxidoreducta 92.0 0.61 1.3E-05 64.4 10.8 232 502-783 633-893 (897)
161 PF12348 CLASP_N: CLASP N term 92.0 0.67 1.5E-05 53.1 9.6 113 501-622 88-207 (228)
162 PF02985 HEAT: HEAT repeat; I 91.9 0.18 4E-06 40.4 3.4 31 45-75 1-31 (31)
163 PRK11747 dinG ATP-dependent DN 91.8 0.76 1.6E-05 61.7 11.0 39 1548-1586 217-260 (697)
164 PRK04296 thymidine kinase; Pro 91.6 0.68 1.5E-05 52.2 8.9 39 1569-1609 75-114 (190)
165 PRK12906 secA preprotein trans 91.5 0.82 1.8E-05 61.5 10.7 137 1443-1610 78-227 (796)
166 KOG0340 ATP-dependent RNA heli 91.5 0.86 1.9E-05 55.4 9.7 152 1446-1609 30-193 (442)
167 PF12340 DUF3638: Protein of u 91.5 0.91 2E-05 52.9 9.7 111 1443-1562 21-142 (229)
168 PF09848 DUF2075: Uncharacteri 91.0 0.64 1.4E-05 57.3 8.5 90 1468-1586 5-97 (352)
169 PTZ00429 beta-adaptin; Provisi 90.5 1.4 3E-05 59.4 11.5 269 587-921 135-420 (746)
170 PLN03200 cellulose synthase-in 90.5 1.4E+02 0.0029 45.3 38.6 132 1265-1399 628-767 (2102)
171 KOG1802 RNA helicase nonsense 90.4 1 2.2E-05 58.2 9.4 75 1445-1535 410-485 (935)
172 cd00009 AAA The AAA+ (ATPases 90.3 2.7 5.9E-05 42.9 11.2 43 1571-1613 83-132 (151)
173 KOG0328 Predicted ATP-dependen 90.0 0.44 9.5E-06 56.1 5.4 166 1449-1629 53-225 (400)
174 KOG1242 Protein containing ada 90.0 0.38 8.2E-06 61.8 5.4 171 1205-1393 150-321 (569)
175 TIGR01447 recD exodeoxyribonuc 89.7 1.7 3.6E-05 57.3 11.1 142 1448-1613 148-298 (586)
176 PF01602 Adaptin_N: Adaptin N 89.6 0.49 1.1E-05 60.7 6.1 213 544-789 107-333 (526)
177 KOG4284 DEAD box protein [Tran 89.4 0.66 1.4E-05 59.6 6.7 155 1448-1613 50-212 (980)
178 KOG0950 DNA polymerase theta/e 89.3 1.8 3.8E-05 58.4 10.6 161 1445-1619 223-396 (1008)
179 KOG0336 ATP-dependent RNA heli 89.2 0.81 1.8E-05 56.1 7.0 144 1466-1612 259-409 (629)
180 KOG0333 U5 snRNP-like RNA heli 88.5 1.1 2.4E-05 56.8 7.6 133 1448-1585 270-409 (673)
181 COG1875 NYN ribonuclease and A 88.3 1.9 4.2E-05 52.9 9.3 145 1449-1614 232-391 (436)
182 KOG0341 DEAD-box protein abstr 87.9 0.57 1.2E-05 57.0 4.5 137 1471-1610 214-367 (610)
183 PRK12902 secA preprotein trans 87.3 3.3 7.1E-05 56.3 11.4 121 1444-1584 84-217 (939)
184 TIGR01448 recD_rel helicase, p 87.2 3.6 7.9E-05 55.6 12.1 137 1442-1614 320-456 (720)
185 PRK13800 putative oxidoreducta 86.9 1.8 4E-05 59.8 9.2 77 527-617 756-832 (897)
186 KOG1241 Karyopherin (importin) 86.5 21 0.00045 47.7 17.3 170 1206-1380 518-693 (859)
187 PRK09687 putative lyase; Provi 86.2 0.63 1.4E-05 55.8 3.8 99 503-617 104-217 (280)
188 KOG0352 ATP-dependent DNA heli 85.9 4.8 0.0001 50.1 10.8 162 1448-1628 23-204 (641)
189 PLN03025 replication factor C 85.5 6.2 0.00013 48.1 11.8 52 1572-1623 99-151 (319)
190 PRK12901 secA preprotein trans 85.4 3.6 7.7E-05 56.6 10.4 148 1442-1623 164-329 (1112)
191 smart00382 AAA ATPases associa 85.3 3.4 7.4E-05 41.6 8.1 113 1466-1610 4-125 (148)
192 PF01602 Adaptin_N: Adaptin N 85.2 5.7 0.00012 51.0 12.0 253 1061-1394 77-331 (526)
193 PRK10875 recD exonuclease V su 84.7 4 8.7E-05 54.2 10.4 143 1447-1614 154-305 (615)
194 PF13646 HEAT_2: HEAT repeats; 84.6 0.93 2E-05 43.8 3.5 72 528-616 15-87 (88)
195 KOG0334 RNA helicase [RNA proc 84.6 2.7 5.9E-05 57.2 8.7 157 1445-1609 387-555 (997)
196 KOG0346 RNA helicase [RNA proc 84.5 3.7 8.1E-05 51.3 9.0 133 1449-1586 45-184 (569)
197 TIGR02881 spore_V_K stage V sp 84.4 4.5 9.9E-05 47.8 9.8 23 1466-1488 44-66 (261)
198 PRK07003 DNA polymerase III su 84.2 5.7 0.00012 53.5 11.2 48 1571-1620 118-168 (830)
199 PF12717 Cnd1: non-SMC mitotic 83.6 2 4.2E-05 48.1 5.9 92 1300-1396 1-92 (178)
200 PRK12900 secA preprotein trans 83.5 6 0.00013 54.4 11.2 147 1442-1620 133-294 (1025)
201 KOG0926 DEAH-box RNA helicase 83.1 4.2 9E-05 54.0 9.1 150 1463-1627 270-441 (1172)
202 PHA02533 17 large terminase pr 83.0 6.6 0.00014 51.4 11.1 157 1442-1620 56-220 (534)
203 PF02399 Herpes_ori_bp: Origin 83.0 3.1 6.7E-05 55.9 8.1 127 1468-1610 53-190 (824)
204 PRK09687 putative lyase; Provi 82.5 1.7 3.6E-05 52.3 5.2 70 9-81 57-128 (280)
205 KOG0337 ATP-dependent RNA heli 82.5 3 6.5E-05 51.9 7.2 136 1471-1611 65-206 (529)
206 KOG0351 ATP-dependent DNA heli 82.5 3 6.6E-05 57.4 8.1 169 1443-1631 262-451 (941)
207 PF12717 Cnd1: non-SMC mitotic 82.4 2.2 4.8E-05 47.7 5.8 89 529-621 4-92 (178)
208 PF06733 DEAD_2: DEAD_2; Inte 82.4 1.4 3.1E-05 48.7 4.3 42 1545-1586 114-159 (174)
209 TIGR00631 uvrb excinuclease AB 82.1 9.4 0.0002 51.2 12.2 68 1446-1525 10-79 (655)
210 KOG1820 Microtubule-associated 82.1 8.3 0.00018 52.5 11.7 139 1256-1398 305-445 (815)
211 PRK12323 DNA polymerase III su 82.0 13 0.00029 49.5 13.1 48 1571-1620 123-173 (700)
212 PRK12723 flagellar biosynthesi 81.9 28 0.0006 44.1 15.5 153 1467-1649 177-347 (388)
213 cd08050 TAF6 TATA Binding Prot 81.2 6.5 0.00014 48.7 9.7 125 1212-1351 198-336 (343)
214 TIGR02562 cas3_yersinia CRISPR 80.5 35 0.00076 47.7 16.6 173 1447-1620 410-644 (1110)
215 KOG0949 Predicted helicase, DE 80.5 5.7 0.00012 53.8 9.1 162 1447-1623 513-682 (1330)
216 TIGR03420 DnaA_homol_Hda DnaA 80.3 14 0.0003 42.2 11.4 38 1574-1611 92-133 (226)
217 CHL00122 secA preprotein trans 79.9 5.7 0.00012 54.0 9.1 122 1443-1584 74-208 (870)
218 PRK14956 DNA polymerase III su 79.6 9.2 0.0002 49.3 10.4 41 1449-1489 22-65 (484)
219 KOG1943 Beta-tubulin folding c 78.5 3.1E+02 0.0067 38.8 32.2 346 491-938 181-614 (1133)
220 PRK07994 DNA polymerase III su 77.7 22 0.00047 47.7 13.3 41 1450-1490 21-64 (647)
221 PLN03200 cellulose synthase-in 77.2 4.7E+02 0.01 40.1 30.2 168 592-789 530-723 (2102)
222 KOG0212 Uncharacterized conser 77.2 4.9 0.00011 51.5 6.9 178 567-789 59-237 (675)
223 KOG0922 DEAH-box RNA helicase 76.7 6.3 0.00014 51.7 7.8 146 1462-1628 64-224 (674)
224 PF05876 Terminase_GpA: Phage 76.6 3.1 6.7E-05 54.6 5.3 172 1437-1622 8-191 (557)
225 PRK12402 replication factor C 76.5 9 0.0002 46.4 8.9 39 1451-1489 21-61 (337)
226 PF10508 Proteasom_PSMB: Prote 76.5 21 0.00046 46.5 12.7 117 588-738 73-191 (503)
227 PRK05703 flhF flagellar biosyn 76.1 22 0.00049 45.3 12.5 56 1572-1628 299-360 (424)
228 PRK14961 DNA polymerase III su 75.4 14 0.00029 46.1 10.2 41 1449-1489 20-63 (363)
229 TIGR03015 pepcterm_ATPase puta 75.2 17 0.00037 42.6 10.5 39 1448-1486 26-65 (269)
230 cd00020 ARM Armadillo/beta-cat 75.2 1.9 4.1E-05 43.2 2.3 106 1288-1394 8-118 (120)
231 TIGR02880 cbbX_cfxQ probable R 75.0 6.4 0.00014 47.4 7.0 25 1466-1490 60-84 (284)
232 PRK05298 excinuclease ABC subu 73.8 19 0.00042 48.4 11.6 79 1442-1534 9-89 (652)
233 PRK07952 DNA replication prote 73.2 68 0.0015 38.2 14.6 62 1448-1522 79-144 (244)
234 PRK08084 DNA replication initi 73.0 25 0.00054 41.2 11.0 22 1466-1487 47-68 (235)
235 PF10508 Proteasom_PSMB: Prote 72.8 18 0.00038 47.2 10.7 155 494-665 28-190 (503)
236 CHL00181 cbbX CbbX; Provisiona 72.6 9 0.00019 46.3 7.4 24 1466-1489 61-84 (287)
237 KOG0344 ATP-dependent RNA heli 72.4 6.1 0.00013 51.1 6.1 135 1447-1587 160-303 (593)
238 PRK11889 flhF flagellar biosyn 72.4 52 0.0011 41.9 13.9 127 1468-1628 245-380 (436)
239 PRK14948 DNA polymerase III su 72.0 23 0.00049 47.4 11.5 41 1450-1490 21-64 (620)
240 PF00448 SRP54: SRP54-type pro 71.7 20 0.00043 41.0 9.6 132 1468-1628 5-143 (196)
241 KOG1242 Protein containing ada 71.2 27 0.00059 45.7 11.4 226 511-789 219-444 (569)
242 PRK08181 transposase; Validate 71.0 63 0.0014 38.9 13.9 46 1445-1490 87-132 (269)
243 PRK07764 DNA polymerase III su 70.7 13 0.00028 51.1 9.1 25 1466-1490 38-63 (824)
244 PRK12903 secA preprotein trans 70.5 17 0.00037 49.7 9.7 118 1445-1584 78-210 (925)
245 PF11865 DUF3385: Domain of un 70.4 7.2 0.00016 43.2 5.5 112 1282-1396 8-157 (160)
246 PRK14949 DNA polymerase III su 70.0 20 0.00043 49.4 10.3 25 1466-1490 39-64 (944)
247 COG0464 SpoVK ATPases of the A 69.4 17 0.00036 47.1 9.4 67 1446-1524 250-324 (494)
248 PF12719 Cnd3: Nuclear condens 68.7 13 0.00028 44.9 7.7 128 1266-1395 3-142 (298)
249 KOG0915 Uncharacterized conser 68.4 59 0.0013 46.7 14.1 154 1205-1390 1147-1300(1702)
250 PRK14955 DNA polymerase III su 68.4 47 0.001 42.0 12.8 41 1450-1490 21-64 (397)
251 COG1643 HrpA HrpA-like helicas 68.3 19 0.0004 49.6 9.6 145 1461-1621 62-216 (845)
252 PF05621 TniB: Bacterial TniB 68.1 54 0.0012 40.1 12.5 137 1448-1610 40-189 (302)
253 PF12231 Rif1_N: Rap1-interact 67.8 92 0.002 39.2 15.0 219 502-818 106-327 (372)
254 PTZ00429 beta-adaptin; Provisi 67.4 66 0.0014 44.1 14.4 171 593-789 369-546 (746)
255 PRK09111 DNA polymerase III su 66.9 31 0.00068 46.0 11.1 138 1450-1613 29-174 (598)
256 PRK08691 DNA polymerase III su 66.8 50 0.0011 44.6 12.9 40 1450-1489 21-63 (709)
257 KOG2549 Transcription initiati 66.5 27 0.00057 45.3 9.8 126 1212-1351 227-366 (576)
258 PRK09112 DNA polymerase III su 66.5 25 0.00054 43.9 9.6 41 1450-1490 28-71 (351)
259 COG5215 KAP95 Karyopherin (imp 66.3 14 0.00029 47.8 7.1 184 1207-1393 518-708 (858)
260 KOG1943 Beta-tubulin folding c 66.1 15 0.00032 50.6 7.8 95 1289-1387 343-448 (1133)
261 KOG0738 AAA+-type ATPase [Post 66.0 14 0.00029 46.2 6.9 46 1466-1524 247-293 (491)
262 cd00020 ARM Armadillo/beta-cat 66.0 21 0.00044 35.8 7.4 68 8-76 9-81 (120)
263 cd01121 Sms Sms (bacterial rad 65.6 32 0.0007 43.2 10.4 86 1468-1585 86-171 (372)
264 PRK06526 transposase; Provisio 65.3 39 0.00085 40.3 10.6 27 1463-1489 97-123 (254)
265 KOG4653 Uncharacterized conser 65.0 28 0.0006 47.1 9.8 142 1207-1367 786-930 (982)
266 PRK14958 DNA polymerase III su 64.3 59 0.0013 42.6 12.8 41 1450-1490 21-64 (509)
267 KOG0920 ATP-dependent RNA heli 64.3 44 0.00096 46.3 11.8 154 1447-1622 175-341 (924)
268 PRK14974 cell division protein 64.2 69 0.0015 39.9 12.7 115 1467-1613 143-267 (336)
269 PF00308 Bac_DnaA: Bacterial d 64.1 74 0.0016 37.0 12.3 37 1572-1608 97-137 (219)
270 PRK14959 DNA polymerase III su 63.9 26 0.00056 46.8 9.4 25 1466-1490 39-64 (624)
271 TIGR02928 orc1/cdc6 family rep 63.6 71 0.0015 39.4 12.8 43 1447-1489 20-65 (365)
272 PRK14950 DNA polymerase III su 63.4 25 0.00055 46.7 9.4 41 1449-1489 20-63 (585)
273 TIGR02768 TraA_Ti Ti-type conj 63.4 40 0.00086 46.2 11.4 127 1444-1613 351-479 (744)
274 PRK05707 DNA polymerase III su 63.3 35 0.00075 42.2 9.9 46 1445-1491 3-49 (328)
275 cd01120 RecA-like_NTPases RecA 63.2 55 0.0012 34.5 10.3 22 1468-1489 3-24 (165)
276 PRK14960 DNA polymerase III su 63.1 41 0.0009 45.2 11.0 24 1466-1489 38-62 (702)
277 PRK08116 hypothetical protein; 62.9 71 0.0015 38.3 12.2 25 1466-1490 116-140 (268)
278 PRK14963 DNA polymerase III su 62.9 55 0.0012 42.8 12.1 41 1450-1490 19-62 (504)
279 PRK14954 DNA polymerase III su 62.6 38 0.00082 45.4 10.7 42 1449-1490 20-64 (620)
280 KOG0989 Replication factor C, 62.4 20 0.00044 43.7 7.3 42 1449-1490 40-83 (346)
281 cd01124 KaiC KaiC is a circadi 62.0 61 0.0013 35.7 10.8 47 1468-1523 3-49 (187)
282 PRK14951 DNA polymerase III su 61.6 64 0.0014 43.3 12.4 41 1450-1490 21-64 (618)
283 PRK07471 DNA polymerase III su 61.6 40 0.00086 42.3 10.1 122 1450-1584 24-153 (365)
284 KOG0925 mRNA splicing factor A 60.8 24 0.00053 45.0 7.8 51 1571-1625 158-216 (699)
285 PRK07940 DNA polymerase III su 60.4 24 0.00051 44.7 8.0 25 1466-1490 37-62 (394)
286 PRK14088 dnaA chromosomal repl 60.1 86 0.0019 40.4 13.0 23 1467-1489 133-155 (440)
287 KOG1949 Uncharacterized conser 60.0 52 0.0011 43.8 10.7 175 528-737 145-332 (1005)
288 KOG0329 ATP-dependent RNA heli 59.9 7.1 0.00015 45.8 3.0 109 1468-1584 82-197 (387)
289 PF10363 DUF2435: Protein of u 59.8 29 0.00063 35.2 7.0 67 1263-1330 20-86 (92)
290 PTZ00112 origin recognition co 59.2 1.1E+02 0.0024 42.6 13.8 22 1469-1490 786-807 (1164)
291 PRK14964 DNA polymerase III su 58.9 40 0.00087 43.9 9.7 23 1467-1489 38-60 (491)
292 PF10521 DUF2454: Protein of u 58.0 1.1E+02 0.0024 37.0 12.8 185 563-816 87-280 (282)
293 PRK06645 DNA polymerase III su 57.4 58 0.0013 42.7 10.9 41 1450-1490 26-69 (507)
294 PRK00149 dnaA chromosomal repl 57.2 66 0.0014 41.3 11.3 23 1467-1489 151-173 (450)
295 PRK14952 DNA polymerase III su 57.2 34 0.00073 45.5 8.8 41 1450-1490 18-61 (584)
296 KOG1061 Vesicle coat complex A 57.2 13 0.00027 49.7 4.9 176 546-737 81-269 (734)
297 PRK08769 DNA polymerase III su 56.4 63 0.0014 39.9 10.4 150 1444-1620 3-162 (319)
298 PRK06835 DNA replication prote 56.3 1E+02 0.0022 38.3 12.2 46 1445-1490 160-209 (329)
299 COG0653 SecA Preprotein transl 56.3 35 0.00076 46.6 8.8 135 1463-1625 92-241 (822)
300 PRK06090 DNA polymerase III su 55.4 64 0.0014 39.9 10.2 145 1445-1620 3-157 (319)
301 PF08506 Cse1: Cse1; InterPro 54.8 68 0.0015 40.4 10.5 127 1204-1344 226-365 (370)
302 PRK08727 hypothetical protein; 54.8 58 0.0013 38.1 9.5 22 1467-1488 44-65 (233)
303 KOG1240 Protein kinase contain 54.8 9E+02 0.02 35.1 21.0 273 882-1318 437-727 (1431)
304 TIGR00362 DnaA chromosomal rep 54.7 91 0.002 39.4 11.8 22 1468-1489 140-161 (405)
305 KOG0326 ATP-dependent RNA heli 54.4 17 0.00037 44.2 4.9 131 1468-1609 125-267 (459)
306 PRK06964 DNA polymerase III su 54.2 48 0.001 41.3 9.0 46 1446-1491 2-48 (342)
307 PRK13826 Dtr system oriT relax 54.0 74 0.0016 45.3 11.6 140 1444-1625 380-520 (1102)
308 PF05004 IFRD: Interferon-rela 53.7 1.7E+02 0.0036 36.1 13.4 61 1259-1319 199-260 (309)
309 PRK14962 DNA polymerase III su 53.5 42 0.00092 43.5 8.7 22 1468-1489 40-61 (472)
310 PF00514 Arm: Armadillo/beta-c 52.9 28 0.00061 29.5 4.8 35 1282-1316 5-41 (41)
311 PF13177 DNA_pol3_delta2: DNA 52.7 94 0.002 34.4 10.2 133 1450-1613 2-144 (162)
312 PF12460 MMS19_C: RNAPII trans 52.5 40 0.00086 42.9 8.2 94 498-638 318-411 (415)
313 PRK07993 DNA polymerase III su 52.4 58 0.0013 40.4 9.4 136 1445-1610 2-147 (334)
314 PRK14969 DNA polymerase III su 52.2 68 0.0015 42.3 10.4 41 1449-1489 20-63 (527)
315 KOG0924 mRNA splicing factor A 52.0 36 0.00079 45.1 7.5 153 1457-1628 364-529 (1042)
316 PRK06871 DNA polymerase III su 51.8 1E+02 0.0022 38.3 11.2 46 1446-1491 3-51 (325)
317 PRK06647 DNA polymerase III su 51.6 50 0.0011 43.8 9.1 23 1468-1490 42-64 (563)
318 PHA03372 DNA packaging termina 50.4 32 0.0007 45.4 6.9 96 1475-1586 213-313 (668)
319 PRK14957 DNA polymerase III su 50.1 66 0.0014 42.6 9.7 40 1450-1489 21-63 (546)
320 COG5181 HSH155 U2 snRNP splice 50.1 73 0.0016 41.9 9.6 134 588-766 600-734 (975)
321 PRK14087 dnaA chromosomal repl 50.0 94 0.002 40.2 11.0 22 1467-1488 144-165 (450)
322 PF05496 RuvB_N: Holliday junc 49.7 1.4E+02 0.0031 35.4 11.2 55 1424-1482 14-68 (233)
323 COG1484 DnaC DNA replication p 49.5 64 0.0014 38.5 8.8 50 1463-1521 104-153 (254)
324 KOG0952 DNA/RNA helicase MER3/ 49.3 12 0.00025 51.5 2.8 113 1465-1587 944-1061(1230)
325 PRK13889 conjugal transfer rel 48.9 78 0.0017 44.7 10.6 138 1444-1623 345-483 (988)
326 PF11698 V-ATPase_H_C: V-ATPas 47.9 43 0.00093 35.8 6.2 66 8-74 45-116 (119)
327 PRK05986 cob(I)alamin adenolsy 47.2 1.2E+02 0.0025 35.1 10.0 138 1465-1622 23-169 (191)
328 KOG2023 Nuclear transport rece 47.2 20 0.00044 47.1 4.3 142 1206-1368 372-518 (885)
329 KOG1992 Nuclear export recepto 46.9 1.8E+02 0.0039 39.9 12.6 88 1283-1371 494-593 (960)
330 PRK14965 DNA polymerase III su 46.7 1.1E+02 0.0023 40.9 11.0 41 1450-1490 21-64 (576)
331 KOG2032 Uncharacterized conser 46.6 99 0.0021 40.0 9.9 114 1284-1397 255-372 (533)
332 PRK05563 DNA polymerase III su 45.9 73 0.0016 42.3 9.3 25 1465-1489 38-63 (559)
333 PHA02544 44 clamp loader, smal 45.7 1.3E+02 0.0029 36.3 11.0 51 1572-1622 100-152 (316)
334 TIGR03345 VI_ClpV1 type VI sec 45.6 97 0.0021 43.3 10.7 34 1454-1487 196-231 (852)
335 cd00561 CobA_CobO_BtuR ATP:cor 45.6 1.1E+02 0.0023 34.3 9.1 133 1468-1620 6-147 (159)
336 PF12460 MMS19_C: RNAPII trans 45.4 50 0.0011 42.0 7.5 99 1296-1396 199-298 (415)
337 PRK14722 flhF flagellar biosyn 45.4 1.2E+02 0.0026 38.4 10.5 126 1467-1623 140-270 (374)
338 PRK00440 rfc replication facto 45.2 1.8E+02 0.0039 35.0 11.9 22 1466-1487 40-61 (319)
339 TIGR00708 cobA cob(I)alamin ad 44.9 24 0.00052 39.9 4.0 54 1566-1619 91-148 (173)
340 PRK06731 flhF flagellar biosyn 44.8 2.4E+02 0.0053 34.1 12.7 127 1467-1628 78-214 (270)
341 PRK00771 signal recognition pa 44.7 93 0.002 40.1 9.7 23 1467-1489 98-120 (437)
342 COG0470 HolB ATPase involved i 44.5 91 0.002 37.4 9.3 25 1467-1491 27-51 (325)
343 PRK08451 DNA polymerase III su 44.0 1.1E+02 0.0024 40.4 10.4 22 1468-1489 40-61 (535)
344 COG3421 Uncharacterized protei 43.6 31 0.00068 45.1 5.2 104 1472-1585 5-125 (812)
345 COG0553 HepA Superfamily II DN 43.5 18 0.00039 49.5 3.4 181 1442-1632 81-289 (866)
346 PRK08903 DnaA regulatory inact 43.3 2E+02 0.0042 33.2 11.3 23 1465-1487 43-65 (227)
347 PRK12724 flagellar biosynthesi 42.7 2.1E+02 0.0045 37.0 12.1 126 1468-1628 227-362 (432)
348 PRK06921 hypothetical protein; 42.7 1.6E+02 0.0034 35.5 10.7 26 1465-1490 118-143 (266)
349 KOG0991 Replication factor C, 42.4 44 0.00096 39.5 5.6 24 1466-1489 50-73 (333)
350 PF00004 AAA: ATPase family as 42.1 59 0.0013 33.3 6.2 20 1468-1487 2-21 (132)
351 PF13245 AAA_19: Part of AAA d 42.0 58 0.0013 31.8 5.7 42 1467-1513 13-54 (76)
352 TIGR00596 rad1 DNA repair prot 41.7 70 0.0015 44.2 8.4 64 1548-1612 5-74 (814)
353 PF04118 Dopey_N: Dopey, N-ter 41.2 40 0.00086 41.4 5.4 88 705-816 95-189 (307)
354 PRK12422 chromosomal replicati 41.2 1.1E+02 0.0024 39.5 9.7 23 1467-1489 144-166 (445)
355 KOG2160 Armadillo/beta-catenin 40.9 96 0.0021 38.6 8.5 102 1256-1357 93-198 (342)
356 PRK10416 signal recognition pa 40.9 2.9E+02 0.0062 34.2 12.8 52 1569-1620 193-254 (318)
357 CHL00095 clpC Clp protease ATP 40.9 95 0.0021 43.1 9.6 25 1464-1488 200-224 (821)
358 PRK11054 helD DNA helicase IV; 40.8 59 0.0013 44.2 7.4 71 1444-1525 195-266 (684)
359 COG3267 ExeA Type II secretory 40.6 1.1E+02 0.0024 36.8 8.7 47 1466-1522 53-105 (269)
360 PTZ00293 thymidine kinase; Pro 40.6 67 0.0014 37.5 6.8 35 1468-1511 8-42 (211)
361 PRK11823 DNA repair protein Ra 40.6 1.3E+02 0.0027 39.0 10.0 87 1468-1586 84-170 (446)
362 PRK06305 DNA polymerase III su 40.5 1.1E+02 0.0024 39.6 9.5 41 1450-1490 22-65 (451)
363 cd03115 SRP The signal recogni 40.4 2.5E+02 0.0053 30.9 11.1 22 1468-1489 4-25 (173)
364 COG0593 DnaA ATPase involved i 40.3 84 0.0018 40.1 8.1 53 1572-1624 175-235 (408)
365 PRK08760 replicative DNA helic 40.1 2.4E+02 0.0051 36.9 12.4 110 1467-1586 232-353 (476)
366 PRK08058 DNA polymerase III su 40.1 1.4E+02 0.0031 36.8 10.1 130 1448-1609 9-148 (329)
367 PRK12377 putative replication 39.8 2.6E+02 0.0057 33.4 11.8 25 1466-1490 103-127 (248)
368 KOG0951 RNA helicase BRR2, DEA 39.7 1.2E+02 0.0026 43.3 9.7 107 1461-1586 1156-1267(1674)
369 PRK11034 clpA ATP-dependent Cl 39.7 98 0.0021 42.6 9.2 25 1463-1487 206-230 (758)
370 PRK06893 DNA replication initi 39.5 1.1E+02 0.0024 35.6 8.7 21 1468-1488 43-63 (229)
371 PRK14086 dnaA chromosomal repl 39.0 1.9E+02 0.004 39.0 11.3 38 1573-1610 378-419 (617)
372 PRK13342 recombination factor 37.7 1.7E+02 0.0038 37.2 10.6 21 1466-1486 38-58 (413)
373 COG1419 FlhF Flagellar GTP-bin 37.6 7.2E+02 0.016 32.0 15.4 32 1558-1589 325-359 (407)
374 KOG2274 Predicted importin 9 [ 37.4 64 0.0014 44.1 6.7 108 1205-1359 54-161 (1005)
375 PRK06904 replicative DNA helic 37.2 3.5E+02 0.0077 35.3 13.3 111 1467-1587 224-349 (472)
376 PHA03333 putative ATPase subun 37.2 3.2E+02 0.007 37.3 12.9 144 1452-1611 176-332 (752)
377 COG1066 Sms Predicted ATP-depe 36.9 1.2E+02 0.0026 38.7 8.6 88 1468-1588 97-184 (456)
378 PHA03368 DNA packaging termina 36.7 45 0.00098 44.7 5.2 103 1468-1586 258-366 (738)
379 TIGR00959 ffh signal recogniti 36.3 2.9E+02 0.0062 35.7 12.1 23 1467-1489 102-124 (428)
380 PRK13849 putative crown gall t 35.9 1.8E+02 0.0039 34.3 9.5 113 1474-1625 12-127 (231)
381 TIGR00416 sms DNA repair prote 35.6 1.5E+02 0.0033 38.4 9.7 87 1468-1586 98-184 (454)
382 TIGR01074 rep ATP-dependent DN 35.4 1.4E+02 0.003 40.3 9.7 69 1446-1525 2-71 (664)
383 COG2901 Fis Factor for inversi 35.3 26 0.00056 35.3 2.1 37 521-557 18-55 (98)
384 PRK05896 DNA polymerase III su 35.3 1.9E+02 0.0041 38.9 10.5 40 1450-1489 21-63 (605)
385 PRK07414 cob(I)yrinic acid a,c 35.0 1.1E+02 0.0023 35.0 7.2 56 1566-1624 109-168 (178)
386 TIGR03346 chaperone_ClpB ATP-d 34.8 1.1E+02 0.0024 42.8 8.7 35 1453-1487 181-217 (852)
387 KOG2933 Uncharacterized conser 34.3 1.5E+02 0.0033 36.4 8.6 137 1256-1398 98-236 (334)
388 cd01122 GP4d_helicase GP4d_hel 34.2 4.1E+02 0.009 31.3 12.4 47 1466-1520 32-78 (271)
389 TIGR02397 dnaX_nterm DNA polym 34.1 1.8E+02 0.0039 35.7 9.7 22 1468-1489 40-61 (355)
390 PRK10865 protein disaggregatio 33.9 1.3E+02 0.0028 42.2 9.1 34 1454-1487 187-222 (857)
391 COG2256 MGS1 ATPase related to 33.7 99 0.0021 39.3 7.1 44 1573-1619 105-148 (436)
392 TIGR01242 26Sp45 26S proteasom 33.7 1.3E+02 0.0029 37.5 8.5 23 1464-1486 156-178 (364)
393 KOG0211 Protein phosphatase 2A 33.3 54 0.0012 44.8 5.2 104 1292-1398 523-627 (759)
394 KOG0740 AAA+-type ATPase [Post 33.0 59 0.0013 41.6 5.2 46 1467-1524 189-234 (428)
395 COG3972 Superfamily I DNA and 32.9 2.3E+02 0.0049 37.1 10.0 45 1473-1524 185-230 (660)
396 TIGR03575 selen_PSTK_euk L-ser 32.9 1.1E+02 0.0025 38.1 7.6 135 1467-1611 2-165 (340)
397 TIGR02639 ClpA ATP-dependent C 32.8 2.5E+02 0.0054 38.6 11.5 25 1464-1488 203-227 (731)
398 cd00984 DnaB_C DnaB helicase C 32.7 1.3E+02 0.0028 34.8 7.8 108 1467-1587 16-138 (242)
399 PRK07133 DNA polymerase III su 32.7 2.3E+02 0.0049 39.0 10.7 41 1450-1490 23-66 (725)
400 KOG0915 Uncharacterized conser 32.6 1.9E+02 0.0042 42.0 10.1 87 1293-1379 1087-1184(1702)
401 TIGR00678 holB DNA polymerase 32.6 1.9E+02 0.0042 32.2 8.9 23 1468-1490 18-40 (188)
402 PRK10263 DNA translocase FtsK; 32.5 1.6E+02 0.0035 42.5 9.5 55 1464-1529 1010-1064(1355)
403 KOG0213 Splicing factor 3b, su 32.3 68 0.0015 42.9 5.6 99 1296-1397 485-583 (1172)
404 PF04499 SAPS: SIT4 phosphatas 32.3 2.1E+02 0.0046 37.3 10.2 104 651-789 31-148 (475)
405 cd02037 MRP-like MRP (Multiple 32.2 2.3E+02 0.0049 31.1 9.2 53 1571-1627 66-118 (169)
406 TIGR02270 conserved hypothetic 31.7 68 0.0015 41.0 5.6 106 502-616 67-202 (410)
407 PF10274 ParcG: Parkin co-regu 30.8 2.8E+02 0.0061 31.9 9.6 73 1202-1293 55-130 (183)
408 cd01125 repA Hexameric Replica 30.6 2.1E+02 0.0046 33.4 9.0 112 1466-1583 3-122 (239)
409 TIGR01243 CDC48 AAA family ATP 30.5 1.4E+02 0.0031 40.8 8.7 41 1465-1517 488-528 (733)
410 PRK08533 flagellar accessory p 30.3 4.5E+02 0.0096 30.9 11.6 35 1467-1510 27-61 (230)
411 KOG0327 Translation initiation 30.2 1.1E+02 0.0023 38.6 6.5 152 1449-1610 52-210 (397)
412 PF06564 YhjQ: YhjQ protein; 30.1 85 0.0018 37.4 5.7 20 1472-1491 10-29 (243)
413 PRK14971 DNA polymerase III su 30.0 4.8E+02 0.01 35.3 13.1 21 1468-1488 43-63 (614)
414 PF00265 TK: Thymidine kinase; 29.5 59 0.0013 36.7 4.1 33 1573-1608 77-110 (176)
415 COG0541 Ffh Signal recognition 29.4 1.4E+02 0.003 38.4 7.5 48 1468-1524 104-151 (451)
416 PRK07004 replicative DNA helic 29.4 3.6E+02 0.0079 35.1 11.6 110 1467-1586 216-338 (460)
417 PRK04132 replication factor C 29.3 2.1E+02 0.0045 40.0 9.7 50 1572-1623 630-682 (846)
418 PRK00411 cdc6 cell division co 29.2 5.6E+02 0.012 32.0 13.0 25 1465-1489 56-80 (394)
419 PRK09183 transposase/IS protei 29.1 2.9E+02 0.0063 33.0 10.0 25 1463-1487 101-125 (259)
420 TIGR00064 ftsY signal recognit 28.8 7.9E+02 0.017 29.7 13.6 48 1468-1524 76-123 (272)
421 COG1435 Tdk Thymidine kinase [ 28.6 1.4E+02 0.003 34.7 6.7 33 1573-1608 83-117 (201)
422 KOG0651 26S proteasome regulat 28.5 1.8E+02 0.0038 36.1 7.8 26 1463-1488 165-190 (388)
423 TIGR00665 DnaB replicative DNA 28.3 4.8E+02 0.01 33.4 12.4 110 1467-1586 198-319 (434)
424 PRK07399 DNA polymerase III su 28.3 3E+02 0.0064 34.0 10.1 41 1450-1490 9-52 (314)
425 KOG0733 Nuclear AAA ATPase (VC 28.3 3E+02 0.0066 36.9 10.2 24 1463-1486 544-567 (802)
426 PF00580 UvrD-helicase: UvrD/R 28.0 91 0.002 36.9 5.6 120 1446-1582 1-125 (315)
427 PRK13709 conjugal transfer nic 27.9 4.5E+02 0.0098 39.7 13.1 141 1442-1616 964-1105(1747)
428 TIGR03600 phage_DnaB phage rep 27.8 5.5E+02 0.012 32.7 12.7 109 1468-1586 198-319 (421)
429 COG1702 PhoH Phosphate starvat 27.7 78 0.0017 39.4 4.9 42 1572-1615 243-284 (348)
430 PRK14953 DNA polymerase III su 27.3 2.7E+02 0.0058 36.6 9.9 40 1450-1489 21-63 (486)
431 KOG4653 Uncharacterized conser 27.2 1.1E+02 0.0024 41.8 6.4 130 1266-1396 747-876 (982)
432 COG4626 Phage terminase-like p 27.2 7E+02 0.015 33.3 13.2 142 1440-1598 56-210 (546)
433 KOG1133 Helicase of the DEAD s 27.1 1.1E+02 0.0025 41.0 6.3 49 1442-1490 12-60 (821)
434 PF13173 AAA_14: AAA domain 27.1 55 0.0012 34.4 3.1 38 1572-1613 61-101 (128)
435 PRK14712 conjugal transfer nic 26.9 3.6E+02 0.0078 40.3 11.7 150 1442-1625 832-982 (1623)
436 PRK08506 replicative DNA helic 26.8 4.6E+02 0.01 34.3 11.9 109 1467-1586 195-316 (472)
437 PRK10867 signal recognition pa 26.8 5.5E+02 0.012 33.4 12.3 23 1468-1490 104-126 (433)
438 PRK07276 DNA polymerase III su 26.7 3.9E+02 0.0084 32.9 10.5 46 1445-1491 2-49 (290)
439 KOG0737 AAA+-type ATPase [Post 26.5 1E+02 0.0023 38.6 5.7 50 1463-1524 126-175 (386)
440 TIGR02640 gas_vesic_GvpN gas v 26.4 1.2E+02 0.0026 36.1 6.2 38 1449-1486 6-43 (262)
441 TIGR01425 SRP54_euk signal rec 26.4 7.8E+02 0.017 32.0 13.5 22 1468-1489 104-125 (429)
442 PRK05642 DNA replication initi 26.1 2.1E+02 0.0046 33.5 8.0 37 1573-1609 98-138 (234)
443 KOG0298 DEAD box-containing he 26.1 18 0.00038 50.7 -0.9 46 1442-1487 283-328 (1394)
444 PRK06067 flagellar accessory p 26.0 2.5E+02 0.0055 32.6 8.6 47 1468-1523 29-75 (234)
445 PF03796 DnaB_C: DnaB-like hel 25.8 3.4E+02 0.0074 32.0 9.8 111 1467-1587 22-145 (259)
446 PRK03992 proteasome-activating 25.7 1.2E+02 0.0025 38.5 6.2 22 1465-1486 166-187 (389)
447 PF01695 IstB_IS21: IstB-like 25.5 1.2E+02 0.0027 34.1 5.7 28 1463-1490 46-73 (178)
448 COG0552 FtsY Signal recognitio 25.4 2.8E+02 0.0061 34.7 8.9 122 1468-1616 143-275 (340)
449 CHL00176 ftsH cell division pr 25.4 3.1E+02 0.0067 37.2 10.2 23 1464-1486 216-238 (638)
450 PRK00080 ruvB Holliday junctio 25.3 4.9E+02 0.011 32.0 11.3 22 1465-1486 52-73 (328)
451 PF13481 AAA_25: AAA domain; P 25.1 6.4E+02 0.014 27.9 11.3 112 1466-1586 34-155 (193)
452 PF05970 PIF1: PIF1-like helic 25.1 1.6E+02 0.0034 36.9 7.1 71 1445-1524 1-76 (364)
453 PF13191 AAA_16: AAA ATPase do 25.1 4.8E+02 0.01 28.4 10.2 24 1467-1490 27-50 (185)
454 TIGR03689 pup_AAA proteasome A 25.1 2.1E+02 0.0045 37.8 8.3 25 1464-1488 216-240 (512)
455 KOG1062 Vesicle coat complex A 25.0 1.4E+03 0.031 31.8 15.5 270 1047-1387 90-405 (866)
456 TIGR02760 TraI_TIGR conjugativ 24.9 7E+02 0.015 38.5 14.5 136 1443-1614 1017-1153(1960)
457 KOG0212 Uncharacterized conser 24.8 82 0.0018 41.2 4.5 102 1294-1395 7-112 (675)
458 KOG1133 Helicase of the DEAD s 24.8 57 0.0012 43.6 3.1 52 1528-1586 308-362 (821)
459 PRK12727 flagellar biosynthesi 24.2 8.2E+02 0.018 32.8 13.2 22 1468-1489 354-375 (559)
460 PRK10919 ATP-dependent DNA hel 23.3 1.4E+02 0.003 40.7 6.5 68 1445-1523 2-70 (672)
461 CHL00206 ycf2 Ycf2; Provisiona 23.2 2.1E+02 0.0046 43.1 8.3 41 1465-1517 1631-1671(2281)
462 PRK05748 replicative DNA helic 23.1 5.9E+02 0.013 32.9 11.8 110 1467-1586 206-328 (448)
463 PRK05564 DNA polymerase III su 22.9 2.7E+02 0.0058 34.0 8.4 24 1466-1489 27-51 (313)
464 PRK12726 flagellar biosynthesi 22.6 8.2E+02 0.018 31.6 12.3 45 1468-1521 210-258 (407)
465 COG3598 RepA RecA-family ATPas 22.5 2.2E+02 0.0047 35.5 7.1 117 1463-1588 88-210 (402)
466 TIGR03499 FlhF flagellar biosy 22.1 3.9E+02 0.0085 32.3 9.4 23 1468-1490 198-220 (282)
467 PRK08939 primosomal protein Dn 21.8 3.7E+02 0.0081 33.1 9.2 24 1467-1490 159-182 (306)
468 PRK08840 replicative DNA helic 21.6 7.9E+02 0.017 32.2 12.5 110 1467-1586 220-343 (464)
469 cd08802 Death_UNC5B Death doma 21.5 54 0.0012 33.0 1.7 22 314-335 52-76 (84)
470 PTZ00454 26S protease regulato 21.5 1.6E+02 0.0035 37.5 6.3 23 1464-1486 179-201 (398)
471 KOG1807 Helicases [Replication 21.4 3.2E+02 0.007 37.4 8.8 72 1445-1523 378-450 (1025)
472 KOG1967 DNA repair/transcripti 21.4 2.1E+02 0.0045 39.7 7.2 111 1279-1390 901-1018(1030)
473 PRK09376 rho transcription ter 21.2 3.9E+02 0.0086 34.3 9.3 34 1452-1486 158-191 (416)
474 PRK13341 recombination factor 21.2 4.8E+02 0.01 36.1 10.8 20 1466-1485 54-73 (725)
475 KOG0166 Karyopherin (importin) 20.9 55 0.0012 42.6 2.0 130 591-733 151-305 (514)
476 COG1413 FOG: HEAT repeat [Ener 20.8 75 0.0016 38.7 3.1 75 528-617 195-269 (335)
477 COG3973 Superfamily I DNA and 20.5 1.8E+02 0.0038 38.9 6.1 71 1441-1519 208-278 (747)
478 KOG0780 Signal recognition par 20.4 2.5E+02 0.0053 35.8 7.1 48 1468-1524 105-152 (483)
479 PF02702 KdpD: Osmosensitive K 20.4 1.7E+02 0.0036 34.2 5.4 24 1467-1490 8-31 (211)
480 PRK14723 flhF flagellar biosyn 20.4 6E+02 0.013 35.3 11.3 78 1572-1650 263-359 (767)
481 PF08167 RIX1: rRNA processing 20.3 1.1E+02 0.0023 34.2 3.8 39 38-76 19-57 (165)
482 KOG1810 Cell cycle-associated 20.2 2.3E+02 0.005 40.6 7.4 230 1091-1337 726-982 (1417)
483 COG1413 FOG: HEAT repeat [Ener 20.1 1.7E+02 0.0037 35.6 6.0 35 296-330 270-304 (335)
484 PF08064 UME: UME (NUC010) dom 20.1 4E+02 0.0087 27.7 7.7 71 721-805 29-100 (107)
No 1
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=3e-241 Score=2206.83 Aligned_cols=1304 Identities=45% Similarity=0.706 Sum_probs=1114.7
Q ss_pred CCCCHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCcccccCCCCCcCCCCCCCchHHHH
Q 000237 225 KRPSARELNMLKRKAKISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNKADAVLDEDSSEHEGDGLWPFRSFVE 304 (1806)
Q Consensus 225 ~~lSaRe~n~~KRkak~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~WPf~~~~e 304 (1806)
.++|.||.|+.||++|.+.|..--...+....+++.+...++ +....+.+ |..++..++.+...++++.|||++|||
T Consensus 4 ~r~~~~~~~~~k~~~k~~~~~~~~s~~~~~~~~ss~~~~~~t-~~~l~~~~--d~~~~~~~e~~~~~d~~~~w~f~s~~e 80 (1549)
T KOG0392|consen 4 ARSSLREINKKKRMAKFSFKTKFLSDDEALHQGSSEPDQPST-KRELDEVV--DKSKAFDEENDNCPDGERQWPFLSFLE 80 (1549)
T ss_pred ccccchhHHHHHhhhhcccccccccCchhhccCCCCCCCcch-hhhhhhhc--chhhccccccCCCCCccccccHHHHHH
Confidence 458999999999999999883211111111111111111111 11112222 444444444444466778999999999
Q ss_pred HHHHhcCCCcchhhhhhHHHHHHHHHhcCCCcccccCCCCCCCCcccccccccchhhhhhhhhccccCCCCCCCcchhcc
Q 000237 305 QLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGPDGALNVEFKDKDSITMKREREIDLNVQVPADEPEPLLKK 384 (1806)
Q Consensus 305 ~L~~DLFdp~WEvRHGAa~gLREilk~hg~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1806)
+|+.|||+|+||+|||||+|||||++.||+++|+
T Consensus 81 ~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~---------------------------------------------- 114 (1549)
T KOG0392|consen 81 ELVNDLFEPQWEIRHGAAIALREILKTHGDSLSY---------------------------------------------- 114 (1549)
T ss_pred HHHHHhcCchhhhhcCcchhhhhHHHHhcchhhH----------------------------------------------
Confidence 9999999999999999999999999999977542
Q ss_pred cccCCCCCCccccccccCCCCCCcccccccCCCCCCCCCCCCCccccccccccCCCCcCCCCCCCcccccccCcCCCCCC
Q 000237 385 MKFEDAPPPLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAIDILEPRGQSGE 464 (1806)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1806)
T Consensus 115 -------------------------------------------------------------------------------- 114 (1549)
T KOG0392|consen 115 -------------------------------------------------------------------------------- 114 (1549)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccCCcCCCccccchhhhHHHHHHHHhhcC
Q 000237 465 KGDFLNSETLKNLPENSELMNWLKLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYM 544 (1806)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~wLeDlaiRlLCVlaLDRFGDyVSDqVVAPVRET~AQ~Lgall~~m 544 (1806)
+-||||++||||||+|||||||+||+|||||||+||||||++++||
T Consensus 115 ----------------------------------~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~ 160 (1549)
T KOG0392|consen 115 ----------------------------------ELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHM 160 (1549)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhh
Confidence 0189999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhhccCCceeeecccccchhhhhhhhhhhHHhHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHH
Q 000237 545 HPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIV 624 (1806)
Q Consensus 545 ~~~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKYlvAVR~dll~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v 624 (1806)
+++.++++++|+++|+++++||+||||||||||.||+|+|++..+++.|++.|++||+|+|||||+|||++|+|+++.+|
T Consensus 161 ~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v 240 (1549)
T KOG0392|consen 161 DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQV 240 (1549)
T ss_pred hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhcCchhhHHhhccccccccccchhcccccCCCCCCCCCCchh
Q 000237 625 ALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYM 704 (1806)
Q Consensus 625 ~~~~~~l~~il~~LWd~L~~lDDLs~St~svM~LLa~l~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1806)
++..+++..|+++||+.|.+||||++||+|+|+||+++|.++||++......
T Consensus 241 ~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n---------------------------- 292 (1549)
T KOG0392|consen 241 KLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQN---------------------------- 292 (1549)
T ss_pred hhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhh----------------------------
Confidence 9999999999999999999999999999999999999999999987653221
Q ss_pred h-hcccccccccccccchhhHHHHHHHHHHHHHhccccccccCCCCCCCchhchhhHHHHHHHHHhccchHHHHHHHHHH
Q 000237 705 L-SMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRV 783 (1806)
Q Consensus 705 l-~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~~~~~~~~~~~~~~~W~~~i~~~~LR~vFQnlLlE~~~~I~~~s~~v 783 (1806)
+ ..||||+|||+||+|+|||.|+++|+.+|++++++ +.+ |...++++++|+||||+++|+..++++++++|
T Consensus 293 ~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~q-------s~~-~~~~~l~~~~r~ifq~ll~e~~~e~L~~~~~~ 364 (1549)
T KOG0392|consen 293 LEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQ-------SDS-WQIRILGKLFRKIFQILLLESFNEILDLSEKV 364 (1549)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------CCc-cchhhhHHHHHHHHHHHHhCCcHHHHHhhhhe
Confidence 2 48999999999999999999999999999999865 233 88889999999999999999999999999999
Q ss_pred HHHHhcCChhhHHHhhhhhHHHHHHHhhcCCCCCCCCCccccccCCCccchhhHHHHHhhhhcccCC-CCCCC--CCCcc
Q 000237 784 WRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAVKLENDS-SGSVD--LPQER 860 (1806)
Q Consensus 784 W~~ll~~~~~~~~~~~~~~~~~wl~L~mtP~g~~~d~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~--~~~~~ 860 (1806)
|. ....++..++.|+..|+++++||+|.+++..+++++.. +..+...+..+.+ ..++. +.++. .....
T Consensus 365 ~v-----~v~~~~k~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~q~~~~~~~~~g--~~~~~~s~~~~~~~~~~i 435 (1549)
T KOG0392|consen 365 WV-----TVSKIEKTAAAYLLSWIYLLIQPNGIPLGLVGLLDSGP--DWQHQFSALIAKG--YSKEFSSDKEGLCRKEVI 435 (1549)
T ss_pred ee-----ehHHHHHHHHHHHHHHHHhhhCcCCChHhhhhccccCc--HHHHHHHHHHhhc--cccccccccchhhhhhhh
Confidence 97 45567888999999999999999999999999999873 3333322222222 11111 01110 01122
Q ss_pred cCCCCCCcceeecCCcchhhhhhHHHHH-HHHHHHHHhhhcc-------chhHhHHHHHHHhhcCCchhHHHHHHHHHHH
Q 000237 861 NGDTSTNSVKITVGSDLEMSVTNTRVVT-ASALGIFASKLHE-------GSIQFVIDPLWNALTSFSGVQRQVAAMVFIS 932 (1806)
Q Consensus 861 n~d~~~~~~~~~~ggd~~lv~~~tRi~a-A~alG~l~~~~~~-------~~~~~~~~~L~~~L~S~sa~qR~~aalvi~e 932 (1806)
+.|++ +-|.+.+.+++.+ ++.+|.+.+.+.. ...+.+.+.+...+.|+++.||+.+++++++
T Consensus 436 ~l~~~----------~~D~~~ls~~il~~~~~~~~~~~~l~~~~~t~~~~~~~~~v~~l~~~l~sks~~~~~~vsi~~~~ 505 (1549)
T KOG0392|consen 436 LLDSP----------DEDIVLLSAKILCHAKILGSLDLALEKCDSTIESEELISVVQLLNLPLLSKSYLQNIEVSIVPEE 505 (1549)
T ss_pred cCCCC----------ccchhhhhhhhhcCCcchhHHHHHHHHhhhhhhhccchhHHHhhhhhhhhhhhhhccchhhhHHH
Confidence 23332 3344556677776 6777777665533 2344556777777889999999999999999
Q ss_pred HHhhccccCCCCccCCCCCCCcchhHHHHHHHhccCCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHHHHhccccccccc
Q 000237 933 WFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSMFTEMLS 1012 (1806)
Q Consensus 933 wa~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Y~El~~~l~~lr~ec~~Ll~~~~~~~~~~~~~~ 1012 (1806)
|+...+.... +| +..++....+..+.+ +..+...+|+|+...++++|+||++|+.++.+++
T Consensus 506 w~~~~~~~~~------~~---~~v~~~~L~i~~~~~---~vr~~~~~y~e~~~v~~~~~~ec~ell~~l~~~~------- 566 (1549)
T KOG0392|consen 506 WAALFPCGTS------PP---SEVKPSLLDILKNAD---IVRDEFLDYDELEVVLTELRNECRELIITLVDVR------- 566 (1549)
T ss_pred HHHhccccCC------CC---ccccccHHHHHhhcc---cccccccchHHHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 9987765531 11 122222233333333 4555667999999999999999999999999876
Q ss_pred ccccccccccchhhHHHHHHhhccC-CCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhc
Q 000237 1013 ANEIDVESLSADNAISFASKLQLLG-SNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHVTVSALVAAAVVWMS 1091 (1806)
Q Consensus 1013 ~~~ip~~~~~v~~~ie~A~~~~~~~-~~l~~~~~~~~~~~~~le~~r~~l~~~i~~~~~~~~~~~~~V~A~~A~A~v~l~ 1091 (1806)
...|...+...++- ++.+.. +....++...+.... ++++|++++.+++++|+....++++|.|.+|+|++++.
T Consensus 567 -~~~~n~~~l~~~~~----~v~~s~y~~~~~~~~~~~q~l~-~~ss~~~v~~~~~~~k~~~~~~~~~i~s~~a~~~~~~~ 640 (1549)
T KOG0392|consen 567 -RDLPNNEILTFDET----DVGGSLYEEYSENDFLEKQVLY-LDSSRQQVLMTIEILKNRCKLLEIRIKSLLASAVVTFE 640 (1549)
T ss_pred -ccCccchheeechh----hhhhhhchhhcccccCCchhee-ecchhhHHHhhHHHHHHHHhhcchhhhhchhhHHHHHh
Confidence 22333322222221 455555 666666666676666 99999999999999999999999999999999999999
Q ss_pred CCCCCCCcchHHHHHhhhhhchHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHhhhhccCCCCCCCccccCCCcccccc
Q 000237 1092 ELPARLNPIILPLMASIKREQEEKLQEKAAEALAELIADCIARKPSPNDKLIKNICSLTSMDPCETPQAAAMGSMEIIDD 1171 (1806)
Q Consensus 1092 ~LP~KLNPiIkpLMeSIK~EEn~~LQ~~sA~sla~Li~~~~~~~~~p~~KIikNLc~flC~D~~~tP~~~~~~~~~~~~~ 1171 (1806)
.+|.||||+|+|+|++||+|+|..+|..+++++++|+++|.+|+|+|+.|++||+|.+.|+||+++|... .+..+..
T Consensus 641 ~~pekl~p~I~plm~tik~e~n~~~q~~~~e~~~~L~~~~~~r~p~~~~k~~k~~c~~~~~~p~~~p~~~--a~~~~~~- 717 (1549)
T KOG0392|consen 641 TLPEKLNPIIRPLMETIKKEENAMLQPAAAEALAYLIQQCKDRKPNPYGKPLKKACESECVDPSRAPGLG--ASIRSIH- 717 (1549)
T ss_pred cCchhhhhHHHHHHHHHHhhhHhHhHHHHHHHHHHHHHHHhccCCCccccHHHHHHhhhcCCcccCCccc--ccccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999854 2222222
Q ss_pred ccccccccccCc-ccccccccCCCccccccchhhhcccHHHHHHHHHHHhccchhhhchhhHHHhhhhccCCCCCchhHH
Q 000237 1172 QDFLSFGSSTGK-QKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKI 1250 (1806)
Q Consensus 1172 ~gilsl~~~~~~-~~~~~~~~~~~~~~~~~~~~i~RrGA~~al~~l~~~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~ 1250 (1806)
.++...... ....+...+...++++..+.++||||+++|+.||+.||+++|+++|+||+|+++||....+.+
T Consensus 718 ---~~~~~~~~s~~~~~~~~~~~g~eea~~~~~~errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~---- 790 (1549)
T KOG0392|consen 718 ---PMVDPLINDYTRMVASNLAPGLEEAQALISFERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN---- 790 (1549)
T ss_pred ---ccccccccchhhhhccccCcchhhhhhhHHHHhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC----
Confidence 111111111 111123456678888899999999999999999999999999999999999999995433321
Q ss_pred HhhhccCCChhHHHHHHHHHHHhhccCChhhhHHHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHh
Q 000237 1251 ILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENA 1330 (1806)
Q Consensus 1251 ~~~~~~~~~~q~lid~l~vl~~~~p~~~~~l~~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~ 1330 (1806)
-.++++++|+++++|.++..+|+ +.+++|.++.|++|.+.++||+|||||+++.+..+.++|..+++.+
T Consensus 791 ----------d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~ 859 (1549)
T KOG0392|consen 791 ----------DEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGF 859 (1549)
T ss_pred ----------cchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 17899999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hcccCCccchhhccchhHHHHHHHhhcCCcccCCcchhhhhhhhccccCCchhhhhhhhhhhhcccccccccCCCCCCCC
Q 000237 1331 IPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVPLLPLARGVSPPTGL 1410 (1806)
Q Consensus 1331 ~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~py~~~l~~pll~~msd~~~~vr~~~~~~fa~lv~l~pl~~g~~~p~~l 1410 (1806)
+|++++..++..|+|+.|+++++...++..++||.++||+|++|+|||.+++||.++|.+|+.+++++|+++|+++|+|+
T Consensus 860 ~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gl 939 (1549)
T KOG0392|consen 860 LPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGL 939 (1549)
T ss_pred hhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc-ChHHHHHHHHHhcCCCCCCCccCcccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhH
Q 000237 1411 TEGLSR-NAEDAQFLEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1411 ~~~l~~-~~~~~~fl~~L~d~~~i~~~~ip~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~ 1489 (1806)
++++.. ++++++|++||+||+++++|++|..++++||+||++||+||.|+++|++|||||||||||||+|+||++++.+
T Consensus 940 s~eLl~~ke~erkFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~ 1019 (1549)
T KOG0392|consen 940 SKELLASKEEERKFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDH 1019 (1549)
T ss_pred cHHHHHhHHHHHHHHHHhcCcccCCccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHH
Confidence 999999 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhc
Q 000237 1490 AERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLG 1569 (1806)
Q Consensus 1490 ~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~ 1569 (1806)
+.++.....-...|+|||||++|++||+.|+.+|+ |.++|..|.|++.+|..++.+..+++|+||||+.+|+|++++.
T Consensus 1020 y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf~--pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~ 1097 (1549)
T KOG0392|consen 1020 YKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKFF--PFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLI 1097 (1549)
T ss_pred HhhcccchhhccCCeEEECCchhhhHHHHHHHHhc--chhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHH
Confidence 98743322223379999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred cccceEEEEcccccccChhhHHHHHHHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccc
Q 000237 1570 QLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARD 1649 (1806)
Q Consensus 1570 ~i~w~~VILDEaH~IKN~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~ 1649 (1806)
++.|+|||+||||.|||.+++.++++++|+++||++|||||||||+.||||||+||||||+|++++|.++|++||.++|+
T Consensus 1098 ~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd 1177 (1549)
T KOG0392|consen 1098 KIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRD 1177 (1549)
T ss_pred hcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHhhcceeeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhh
Q 000237 1650 SKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESA 1729 (1806)
Q Consensus 1650 ~~~s~ke~e~g~~ale~L~k~L~PfmLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~ 1729 (1806)
.+++++++|+|..++++||++|.||||||+|+||++|||||++|+|||+|||.|+++|++|.++ .++.+.+.....+
T Consensus 1178 ~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~-~k~~~~~~~d~~~-- 1254 (1549)
T KOG0392|consen 1178 PKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKK-AKQCVSSQIDGGE-- 1254 (1549)
T ss_pred cccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHH-hccccccccccch--
Confidence 9999999999999999999999999999999999999999999999999999999999999887 3333332221110
Q ss_pred hccCCCccccccHHHHHHHHHHHHHhhcCccccCCCCCcchHHhhhhhcCCCCCchhhhhhhcccchhcc-----cCCCC
Q 000237 1730 DKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKASSLSQIS-----CSSGD 1804 (1806)
Q Consensus 1730 ~~~~~~~~~~~~~~~Vfq~L~~LRqiCnHP~LV~~~~~pe~~~~~~~~L~~~~~~~l~di~~s~Kl~aL~-----Cgig~ 1804 (1806)
.... ..++||||+|+||||+||||.||+++.||+.. .+++++.. .++++||++||||+.||+ ||||.
T Consensus 1255 ----~S~g--t~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la-~i~~~l~~-~~~~LHdi~hspKl~AL~qLL~eCGig~ 1326 (1549)
T KOG0392|consen 1255 ----ESLG--TDKTHVFQALQYLRKLCNHPALVLTPVHPDLA-AIVSHLAH-FNSSLHDIQHSPKLSALKQLLSECGIGN 1326 (1549)
T ss_pred ----hccC--cchHHHHHHHHHHHHhcCCcceeeCCCcchHH-HHHHHHHH-hhhhHHHhhhchhHHHHHHHHHHhCCCC
Confidence 0111 12799999999999999999999999999999 99999998 999999999999999996 99996
Q ss_pred C
Q 000237 1805 N 1805 (1806)
Q Consensus 1805 ~ 1805 (1806)
+
T Consensus 1327 ~ 1327 (1549)
T KOG0392|consen 1327 N 1327 (1549)
T ss_pred C
Confidence 4
No 2
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=100.00 E-value=1.4e-87 Score=820.93 Aligned_cols=416 Identities=34% Similarity=0.489 Sum_probs=368.8
Q ss_pred HHHHHhc-CChhhHHHhhhhhHHHHHHHhhcCCCC--CCCCCccccccCCCccchhhHHHHHhhhhcccCCCCC-C---C
Q 000237 783 VWRLLVQ-SPVEDLEAAGGKFMSSWIELATTPFGS--SLDATKMFWPVALPRKSHFKAAAKMRAVKLENDSSGS-V---D 855 (1806)
Q Consensus 783 vW~~ll~-~~~~~~~~~~~~~~~~wl~L~mtP~g~--~~d~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~~~~-~---~ 855 (1806)
||++||+ ...+.+.+++++|+..|+||+|||+|+ |+|+++|++|++.++... +++.++.+++.... + .
T Consensus 1 VW~~Ll~~~~~~~l~~~~~~~l~~wl~L~mtP~g~~~pmd~sll~~ps~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 75 (441)
T PF12054_consen 1 VWEALLQHADPEDLDHAFCPHLSPWLCLLMTPIGVSRPMDPSLLLKPSGHPYGQK-----KGRKKRSRSEAKKESDIPPP 75 (441)
T ss_pred CHHHHHHHcChHHHHHHHHHHHHHHHHHHcCCCCCCCCCChhheecCCCCcccCC-----CccccccccccccccCCCCC
Confidence 7999998 558899999999999999999999999 999999999999875310 01111222111111 1 1
Q ss_pred -CCCcccCCCCCCcceeecCCcchhhh----hhHHHHHHHHHHHHHhhhccchhHhHHH-HHHHhhcCCchhHHHHHHHH
Q 000237 856 -LPQERNGDTSTNSVKITVGSDLEMSV----TNTRVVTASALGIFASKLHEGSIQFVID-PLWNALTSFSGVQRQVAAMV 929 (1806)
Q Consensus 856 -~~~~~n~d~~~~~~~~~~ggd~~lv~----~~tRi~aA~alG~l~~~~~~~~~~~~~~-~L~~~L~S~sa~qR~~aalv 929 (1806)
....||+|++ ||. ||+++|| +|+||+||+|||.++++|+.+....+++ +|+.||+|+||+||++||||
T Consensus 76 ~~~~~~nvd~~-----~~~-gd~~lv~~d~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalv 149 (441)
T PF12054_consen 76 PSSSSHNVDKP-----MII-GDVDLVGMDVVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALV 149 (441)
T ss_pred cccccccCcch-----hhc-ccccccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3467999999 999 9999998 9999999999999999999998887776 69999999999999999999
Q ss_pred HHHHHhhccccCCCCccCCCCCCCcchhHHHHHHHhccCCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHHHHhcccccc
Q 000237 930 FISWFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAMETSSMFTE 1009 (1806)
Q Consensus 930 i~ewa~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Y~El~~~l~~lr~ec~~Ll~~~~~~~~~~~ 1009 (1806)
++|||+.++...+ .+. +..+...|..+|+ ++ +|.||+|++++|++||+||++|+++|+++| +
T Consensus 150 l~ewa~~~~~~~~------~~~----~~~l~~~L~~~L~----~~-~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g---~ 211 (441)
T PF12054_consen 150 LEEWAKACKERNP------SPP----PQALSPRLLEILE----NP-EPPYYDELVPSLKRLRTECQQLLATFRDVG---K 211 (441)
T ss_pred HHHHHHhCccccC------Ccc----HHHHHHHHHHHHc----CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhC---C
Confidence 9999999976642 110 2345666666664 34 678999999999999999999999999999 5
Q ss_pred cccccccccccccchhh---------HHHHHHhhccC-CCCCCCCCcch--hhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000237 1010 MLSANEIDVESLSADNA---------ISFASKLQLLG-SNSDGSESLSR--QMLDDIESIKQRMLTTSGYLKCVQSNLHV 1077 (1806)
Q Consensus 1010 ~~~~~~ip~~~~~v~~~---------ie~A~~~~~~~-~~l~~~~~~~~--~~~~~le~~r~~l~~~i~~~~~~~~~~~~ 1077 (1806)
+ |++++|.++++||++ |++|+++++.. +++++.+++++ .+.++||++|++++.+|++++++|+++|+
T Consensus 212 ~-~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~ 290 (441)
T PF12054_consen 212 V-PPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDV 290 (441)
T ss_pred C-ChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 999999999999963 99999999998 99998888765 56999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcchHHHHHhhhhhchHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHhhhhccCCCCCC
Q 000237 1078 TVSALVAAAVVWMSELPARLNPIILPLMASIKREQEEKLQEKAAEALAELIADCIARKPSPNDKLIKNICSLTSMDPCET 1157 (1806)
Q Consensus 1078 ~V~A~~A~A~v~l~~LP~KLNPiIkpLMeSIK~EEn~~LQ~~sA~sla~Li~~~~~~~~~p~~KIikNLc~flC~D~~~t 1157 (1806)
||+|++|||+|+|++||+||||||||||||||+|||++||+|||.+||+||++|++|+||||||||||||+|+|+||+||
T Consensus 291 ~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~seT 370 (441)
T PF12054_consen 291 RVLAAAASALVALGGLPKKLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSET 370 (441)
T ss_pred HHHHHHHHHHHHhccCCCCccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCccccccccccccccccCcccccccccCCCccccccchhhhcccHHHHHHHHHHHhccchhhhchhhHHHh
Q 000237 1158 PQAAAMGSMEIIDDQDFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCL 1235 (1806)
Q Consensus 1158 P~~~~~~~~~~~~~~gilsl~~~~~~~~~~~~~~~~~~~~~~~~~~i~RrGA~~al~~l~~~fg~~l~~~lP~L~~~~ 1235 (1806)
|+|+.+...+++| ||+++++.+.+ +.+.+.+++++++|||+||||++||++||++||++||++||+||+||
T Consensus 371 P~~~~~~~~~~gI----Lsl~k~~~~~~---~~~~~~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~Lw~~m 441 (441)
T PF12054_consen 371 PEFSHNVDKKDGI----LSLRKEEDKAD---HADAASEEREQKEARIQRRGAELALEQLAKRFGSSLFEKLPKLWECM 441 (441)
T ss_pred CCCCCCcchhhcc----cchhhhccccc---ccccccchhhhhhhHHHhcCHHHHHHHHHHHHhHHHHHhhhHHHhhC
Confidence 9999877666655 99999998888 88999999999999999999999999999999999999999999997
No 3
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.2e-61 Score=588.13 Aligned_cols=328 Identities=34% Similarity=0.605 Sum_probs=291.7
Q ss_pred CCCccCcccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH
Q 000237 1434 DDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV 1513 (1806)
Q Consensus 1434 ~~~~ip~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl 1513 (1806)
..|++|..+...|+|||++||+||+.++..+.||||+||||||||+|+|+|++++++..+. .+|+|||||.+++
T Consensus 194 ~~~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~------~~paLIVCP~Tii 267 (923)
T KOG0387|consen 194 GGFKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKL------TKPALIVCPATII 267 (923)
T ss_pred ccccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccc------cCceEEEccHHHH
Confidence 3499999999999999999999999999999999999999999999999999999876432 2899999999999
Q ss_pred HHHHHHHHHhhccCCceEEEEecChhH-H----------H--HHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcc
Q 000237 1514 GHWAFEIEKFIDVSLMSTLQYVGSAQD-R----------I--ALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDE 1580 (1806)
Q Consensus 1514 ~qW~~Ei~kf~~~p~l~vliy~Gs~~~-R----------~--~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDE 1580 (1806)
.||.+||++|+ |.++|.+|+|+... | . ..+.......|+||||+.++..-+.+..+.|+|||+||
T Consensus 268 ~qW~~E~~~w~--p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 268 HQWMKEFQTWW--PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDE 345 (923)
T ss_pred HHHHHHHHHhC--cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecC
Confidence 99999999999 99999999998762 1 1 11123456789999999999999999999999999999
Q ss_pred cccccChhhHHHHHHHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHH
Q 000237 1581 GHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAG 1660 (1806)
Q Consensus 1581 aH~IKN~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g 1660 (1806)
||+||||+|+++.+++++++.||++|||||||||+.|||+||+|+.||.||+...|++.|..||..|.+.+++....+.+
T Consensus 346 GH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~a 425 (923)
T KOG0387|consen 346 GHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTA 425 (923)
T ss_pred cccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcceeeeeehhhhhc-CCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCcccc
Q 000237 1661 VLAMEALHKQVMPFLLRRTKDEVLS-DLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSA 1739 (1806)
Q Consensus 1661 ~~ale~L~k~L~PfmLRRtKedVl~-dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~ 1739 (1806)
+.+...|+..|.||+|||+|+||.. .||.|.+++++|.||+.|+++|++|.++...+.+-
T Consensus 426 ykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~------------------- 486 (923)
T KOG0387|consen 426 YKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKIL------------------- 486 (923)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHH-------------------
Confidence 9999999999999999999999998 99999999999999999999999999876533221
Q ss_pred ccHHHHHHHHHHHHHhhcCccccCCCCCcchHHhhhhhcCCCCCchhhhhhhcccchhc
Q 000237 1740 KASTHVFQALQYLLKLCSHPLLVLGDKSPESLLCHLSELFPGSSDIISELHKASSLSQI 1798 (1806)
Q Consensus 1740 ~~~~~Vfq~L~~LRqiCnHP~LV~~~~~pe~~~~~~~~L~~~~~~~l~di~~s~Kl~aL 1798 (1806)
.....+|..+..||+|||||.|+.+...++.. ..+.-.++++++|+..|
T Consensus 487 ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~----------~~D~~g~~k~sGKm~vl 535 (923)
T KOG0387|consen 487 NGKRNCLSGIDILRKICNHPDLLDRRDEDEKQ----------GPDYEGDPKRSGKMKVL 535 (923)
T ss_pred cCCccceechHHHHhhcCCcccccCccccccc----------CCCcCCChhhcchHHHH
Confidence 12245688999999999999999876422221 23333788888888776
No 4
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=8.9e-57 Score=544.61 Aligned_cols=314 Identities=33% Similarity=0.576 Sum_probs=271.8
Q ss_pred cCcccc-cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHH
Q 000237 1438 LGTELK-VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHW 1516 (1806)
Q Consensus 1438 ip~~lk-~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW 1516 (1806)
-|..++ .+||+||.+|++||..++.++.+||||||||||||+|+|+++.++.+.+.. .+|.||+||.|++.||
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~------~GPfLVi~P~StL~NW 232 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGI------PGPFLVIAPKSTLDNW 232 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCC------CCCeEEEeeHhhHHHH
Confidence 466677 899999999999999999999999999999999999999999998775432 2899999999999999
Q ss_pred HHHHHHhhccCCceEEEEecChhHHHHHHhhh---cCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHH
Q 000237 1517 AFEIEKFIDVSLMSTLQYVGSAQDRIALREQF---DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITV 1593 (1806)
Q Consensus 1517 ~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l---~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~sk 1593 (1806)
.+||++|+ |.++++.|+|...+|..++..+ +.++|+||||+++-++...|..++|.|+|+||||+|||.+|++++
T Consensus 233 ~~Ef~rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~ 310 (971)
T KOG0385|consen 233 MNEFKRFT--PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSK 310 (971)
T ss_pred HHHHHHhC--CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHH
Confidence 99999999 9999999999999998877754 478999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhhcc
Q 000237 1594 AVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMP 1673 (1806)
Q Consensus 1594 alk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L~P 1673 (1806)
.++.+.+.+|++|||||+|||+.|||+|++||.|..|++.+.|..+|..... +.......+||..+.|
T Consensus 311 ~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~------------~~~~e~v~~Lh~vL~p 378 (971)
T KOG0385|consen 311 ILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC------------EGDQELVSRLHKVLRP 378 (971)
T ss_pred HHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc------------ccCHHHHHHHHhhhhH
Confidence 9999999999999999999999999999999999999999999999965311 1112367899999999
Q ss_pred eeeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCccccccHHHHHHHHHHHH
Q 000237 1674 FLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLL 1753 (1806)
Q Consensus 1674 fmLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~Vfq~L~~LR 1753 (1806)
|+|||.|.+|...||||.+..+||.||+.|++.|..+..+.. ..+..... ..+.....++..||
T Consensus 379 FlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl----------~~~n~~~~------~~k~kL~NI~mQLR 442 (971)
T KOG0385|consen 379 FLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDL----------DALNGEGK------GEKTKLQNIMMQLR 442 (971)
T ss_pred HHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcc----------hhhccccc------chhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999876543 11111111 13577888999999
Q ss_pred HhhcCccccCCCCC-cchHHhhhhhcCCCCCchhhhhhhcccchhcc
Q 000237 1754 KLCSHPLLVLGDKS-PESLLCHLSELFPGSSDIISELHKASSLSQIS 1799 (1806)
Q Consensus 1754 qiCnHP~LV~~~~~-pe~~~~~~~~L~~~~~~~l~di~~s~Kl~aL~ 1799 (1806)
||||||+|+.+..+ |.|. . .-+=+.+|+|+..|+
T Consensus 443 KccnHPYLF~g~ePg~pyt--t----------dehLv~nSGKm~vLD 477 (971)
T KOG0385|consen 443 KCCNHPYLFDGAEPGPPYT--T----------DEHLVTNSGKMLVLD 477 (971)
T ss_pred HhcCCccccCCCCCCCCCC--c----------chHHHhcCcceehHH
Confidence 99999999988544 3332 2 223456777777663
No 5
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=5.8e-55 Score=537.10 Aligned_cols=300 Identities=35% Similarity=0.577 Sum_probs=269.8
Q ss_pred CCccCcccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHH
Q 000237 1435 DYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVG 1514 (1806)
Q Consensus 1435 ~~~ip~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~ 1514 (1806)
..++|.-++++||.||..|++||..+++++.+||||||||||||+|+|++++++..... .++|.|||||.+++-
T Consensus 605 ktpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeeg------nWGPHLIVVpTsviL 678 (1958)
T KOG0391|consen 605 KTPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEG------NWGPHLIVVPTSVIL 678 (1958)
T ss_pred ccCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhccc------CCCCceEEeechhhh
Confidence 56778889999999999999999999999999999999999999999999999887543 349999999999999
Q ss_pred HHHHHHHHhhccCCceEEEEecChhHHHHHHhhhc---CCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHH
Q 000237 1515 HWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD---KHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKI 1591 (1806)
Q Consensus 1515 qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~---~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~ 1591 (1806)
||+-||++|| |.++++.|+|+.++|+..+..|. .+.|.||||..+..+...|....|.|+||||+|+|||-+|++
T Consensus 679 nWEMElKRwc--PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqr 756 (1958)
T KOG0391|consen 679 NWEMELKRWC--PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQR 756 (1958)
T ss_pred hhhHHHhhhC--CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHH
Confidence 9999999999 99999999999999998888774 467999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhh
Q 000237 1592 TVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQV 1671 (1806)
Q Consensus 1592 skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L 1671 (1806)
++++..+++.+|++|||||+||++.|||+|++||||..|.+.+.|+.+|.+|+..--.. .++-+..-+.+||+.+
T Consensus 757 WQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEg-----sqeyn~klV~RLHkVl 831 (1958)
T KOG0391|consen 757 WQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEG-----SQEYNHKLVIRLHKVL 831 (1958)
T ss_pred HHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhccc-----chhhchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998654332 2344456788999999
Q ss_pred cceeeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCccccccHHHHHHHHHH
Q 000237 1672 MPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQY 1751 (1806)
Q Consensus 1672 ~PfmLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~Vfq~L~~ 1751 (1806)
.||+|||+|.||.+.||.|.+|+++|.||..||.+|++|.....-+ + .-+. .....|+.+|.+
T Consensus 832 rPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TK---------e-tLkS-------GhfmsVlnilmq 894 (1958)
T KOG0391|consen 832 RPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTK---------E-TLKS-------GHFMSVLNILMQ 894 (1958)
T ss_pred HHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchh---------h-Hhhc-------CchhHHHHHHHH
Confidence 9999999999999999999999999999999999999996543210 0 0011 235789999999
Q ss_pred HHHhhcCccccCC
Q 000237 1752 LLKLCSHPLLVLG 1764 (1806)
Q Consensus 1752 LRqiCnHP~LV~~ 1764 (1806)
|||+||||.||..
T Consensus 895 LrKvCNHPnLfEp 907 (1958)
T KOG0391|consen 895 LRKVCNHPNLFEP 907 (1958)
T ss_pred HHHHcCCCCcCCC
Confidence 9999999999964
No 6
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=6.3e-52 Score=494.54 Aligned_cols=294 Identities=35% Similarity=0.609 Sum_probs=266.7
Q ss_pred CccCcccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHH
Q 000237 1436 YKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGH 1515 (1806)
Q Consensus 1436 ~~ip~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~q 1515 (1806)
++.|.-++.+|+.||..|++||..++..|.+||||||||||||+|+|++++++...... ++|+|||+|.|.+.|
T Consensus 558 V~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nI------wGPFLVVtpaStL~N 631 (1185)
T KOG0388|consen 558 VPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNI------WGPFLVVTPASTLHN 631 (1185)
T ss_pred ccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccC------CCceEEeehHHHHhH
Confidence 56677899999999999999999999999999999999999999999999998765432 389999999999999
Q ss_pred HHHHHHHhhccCCceEEEEecChhHHHHHHh---------hhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccC
Q 000237 1516 WAFEIEKFIDVSLMSTLQYVGSAQDRIALRE---------QFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1516 W~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~---------~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN 1586 (1806)
|.+||.+|+ |.++++-|-|+..+|..+++ ....++|+||||+++..|..+|.++.|.|+|+||||.||.
T Consensus 632 WaqEisrFl--P~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKS 709 (1185)
T KOG0388|consen 632 WAQEISRFL--PSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKS 709 (1185)
T ss_pred HHHHHHHhC--ccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhh
Confidence 999999999 99999999999999998887 4567899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHHHHHH
Q 000237 1587 SKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEA 1666 (1806)
Q Consensus 1587 ~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~ 1666 (1806)
..|.+++.+..++|+.|++||||||||+..|||.|++|+||.+|.+..+|.++|.+-|+..-..+..-. ...+.+
T Consensus 710 SsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tln-----eqqL~R 784 (1185)
T KOG0388|consen 710 SSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLN-----EQQLQR 784 (1185)
T ss_pred hhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcC-----HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887665543332 235789
Q ss_pred HHHhhcceeeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCccccccHHHHH
Q 000237 1667 LHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVF 1746 (1806)
Q Consensus 1667 L~k~L~PfmLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~Vf 1746 (1806)
||.+++||||||.|++|..+|-.|++.+++|+||..|+.+|+.+..+.. ....+
T Consensus 785 LH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS--------------------------~~E~~ 838 (1185)
T KOG0388|consen 785 LHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS--------------------------SMEME 838 (1185)
T ss_pred HHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh--------------------------HHHHH
Confidence 9999999999999999999999999999999999999999999865432 23344
Q ss_pred HHHHHHHHhhcCccccCCCCCc
Q 000237 1747 QALQYLLKLCSHPLLVLGDKSP 1768 (1806)
Q Consensus 1747 q~L~~LRqiCnHP~LV~~~~~p 1768 (1806)
.++..|||+||||.|+......
T Consensus 839 ~~vmQlrKVCNHPdLFer~e~~ 860 (1185)
T KOG0388|consen 839 NLVMQLRKVCNHPDLFERLEPR 860 (1185)
T ss_pred HHHHHHHHhcCChHHHhhcCCc
Confidence 5888999999999999766443
No 7
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=5.4e-51 Score=496.62 Aligned_cols=308 Identities=31% Similarity=0.529 Sum_probs=254.2
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHh
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKF 1523 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf 1523 (1806)
.+|+|||+.||+||.-+++.+..||||||||||||+|+|+|++++...+. .+|.|||||.|.++||.+||.+|
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-------~gpHLVVvPsSTleNWlrEf~kw 470 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-------PGPHLVVVPSSTLENWLREFAKW 470 (941)
T ss_pred CcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-------CCCcEEEecchhHHHHHHHHHHh
Confidence 35999999999999999999999999999999999999999999876533 38999999999999999999999
Q ss_pred hccCCceEEEEecChhHHHHHHhhh----cCCcEEEeeHHHHHh---hHhhhccccceEEEEcccccccChhhHHHHHHH
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQF----DKHNVIITSYDVVRK---DADYLGQLLWNYCILDEGHIIKNSKSKITVAVK 1596 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~l----~~~dVVITSYe~Lr~---di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk 1596 (1806)
| |.++|..|+|+..+|..++..+ ..|||++|||..+.. |..+|+...|+|||.||||.+||..|.+|+.+.
T Consensus 471 C--Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM 548 (941)
T KOG0389|consen 471 C--PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLM 548 (941)
T ss_pred C--CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhc
Confidence 9 9999999999999998888755 378999999999854 567899999999999999999999999999999
Q ss_pred HhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCch-hHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhhccee
Q 000237 1597 QLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTE-RQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675 (1806)
Q Consensus 1597 ~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~-~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L~Pfm 1675 (1806)
.++|++|++|||||+|||+.|||||+.|++|..|.+. ..+...|..--. .+......-...+++.+-..++.||+
T Consensus 549 ~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~----~d~d~e~~~l~qerIsrAK~im~PFI 624 (941)
T KOG0389|consen 549 SINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKT----SDGDIENALLSQERISRAKTIMKPFI 624 (941)
T ss_pred cccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCC----ccchhhHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999999999999999999988764 556666643110 01111222223346778888999999
Q ss_pred eeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCccccccHHHHHHHHHHHHHh
Q 000237 1676 LRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKL 1755 (1806)
Q Consensus 1676 LRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~Vfq~L~~LRqi 1755 (1806)
|||.|++|+++||||+.++.+|+|++.|+++|+.+.+... ........+. ..++ -..++.|||+
T Consensus 625 LRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~----------~~~~~~~~ns----~~~~--~~vlmqlRK~ 688 (941)
T KOG0389|consen 625 LRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYD----------VKLNEVSKNS----ELKS--GNVLMQLRKA 688 (941)
T ss_pred HHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHh----------hhcccccccc----cccc--chHHHHHHHH
Confidence 9999999999999999999999999999999999987552 1111111111 0111 2367899999
Q ss_pred hcCccccCCCCCcchHHhhhhhcCC
Q 000237 1756 CSHPLLVLGDKSPESLLCHLSELFP 1780 (1806)
Q Consensus 1756 CnHP~LV~~~~~pe~~~~~~~~L~~ 1780 (1806)
+|||.|+...+..+....+.+.+..
T Consensus 689 AnHPLL~R~~Y~de~L~~mak~il~ 713 (941)
T KOG0389|consen 689 ANHPLLFRSIYTDEKLRKMAKRILN 713 (941)
T ss_pred hcChhHHHHhccHHHHHHHHHHHhC
Confidence 9999999988887777444444443
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=2.2e-49 Score=516.90 Aligned_cols=291 Identities=31% Similarity=0.560 Sum_probs=254.5
Q ss_pred ccCcccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHH
Q 000237 1437 KLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHW 1516 (1806)
Q Consensus 1437 ~ip~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW 1516 (1806)
..|..++.+|||||.+|++||..++..+.|||||||||||||+|+|+++..+...+. ..+|+|||||++++.||
T Consensus 161 ~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~------~~gp~LIVvP~SlL~nW 234 (1033)
T PLN03142 161 VQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRG------ITGPHMVVAPKSTLGNW 234 (1033)
T ss_pred cCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcC------CCCCEEEEeChHHHHHH
Confidence 457788899999999999999999999999999999999999999999988765332 23799999999999999
Q ss_pred HHHHHHhhccCCceEEEEecChhHHHHHHhh---hcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHH
Q 000237 1517 AFEIEKFIDVSLMSTLQYVGSAQDRIALREQ---FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITV 1593 (1806)
Q Consensus 1517 ~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~---l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~sk 1593 (1806)
.+||.+|+ |.++++.|+|+...|...... ...++|+||||+++.++...|..+.|++||+||||+|||+.|++++
T Consensus 235 ~~Ei~kw~--p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklsk 312 (1033)
T PLN03142 235 MNEIRRFC--PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSK 312 (1033)
T ss_pred HHHHHHHC--CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHH
Confidence 99999999 889999999998877654432 3578999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhhcc
Q 000237 1594 AVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMP 1673 (1806)
Q Consensus 1594 alk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L~P 1673 (1806)
+++.+++.+||+|||||++|++.|||+|++||.|+.|++...|.+.|..+.. ......+.+|+..+.|
T Consensus 313 alr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~------------~~~~e~i~~L~~~L~p 380 (1033)
T PLN03142 313 TMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE------------NDQQEVVQQLHKVLRP 380 (1033)
T ss_pred HHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc------------cchHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999999976211 1123457899999999
Q ss_pred eeeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCccccccHHHHHHHHHHHH
Q 000237 1674 FLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLL 1753 (1806)
Q Consensus 1674 fmLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~Vfq~L~~LR 1753 (1806)
||+||+|++|..+||||.+.+++|+||+.|+++|+.+...... .+ ... .....++..+..||
T Consensus 381 f~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~----------~l-~~g-------~~~~~LlnilmqLR 442 (1033)
T PLN03142 381 FLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLD----------VV-NAG-------GERKRLLNIAMQLR 442 (1033)
T ss_pred HHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHH----------HH-hcc-------ccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765431 11 111 12356788999999
Q ss_pred HhhcCccccCCC
Q 000237 1754 KLCSHPLLVLGD 1765 (1806)
Q Consensus 1754 qiCnHP~LV~~~ 1765 (1806)
++||||.|+...
T Consensus 443 k~cnHP~L~~~~ 454 (1033)
T PLN03142 443 KCCNHPYLFQGA 454 (1033)
T ss_pred HHhCCHHhhhcc
Confidence 999999998653
No 9
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=3e-49 Score=497.69 Aligned_cols=311 Identities=29% Similarity=0.502 Sum_probs=263.8
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHh
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKF 1523 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf 1523 (1806)
.+||+||.+|+|||++.+.++.+||||||||||||+|+|+++.++...... .+|+|||+|.|.+.+|+.||..|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~------~gpflvvvplst~~~W~~ef~~w 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI------HGPFLVVVPLSTITAWEREFETW 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc------cCCeEEEeehhhhHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999998875533 28999999999999999999999
Q ss_pred hccCCceEEEEecChhHHHHHHhh---------hcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHH
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQ---------FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVA 1594 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~---------l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~ska 1594 (1806)
+ .+++++|+|+...|..++.. .-+++++||||+++-+|..+|.+++|.++++||||++||..++++..
T Consensus 443 ~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~ 519 (1373)
T KOG0384|consen 443 T---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYES 519 (1373)
T ss_pred h---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHH
Confidence 6 79999999999888665541 12589999999999999999999999999999999999999999999
Q ss_pred HHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhhcce
Q 000237 1595 VKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPF 1674 (1806)
Q Consensus 1595 lk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L~Pf 1674 (1806)
+..++.+||+++||||.||++.|||+|++||+|+.|.++..|...|.. .....+..||..|.||
T Consensus 520 l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~----------------~~e~~~~~L~~~L~P~ 583 (1373)
T KOG0384|consen 520 LNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE----------------ETEEQVRKLQQILKPF 583 (1373)
T ss_pred HHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc----------------hhHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999998832 1123577899999999
Q ss_pred eeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCccccccHHHHHHHHHHHHH
Q 000237 1675 LLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLK 1754 (1806)
Q Consensus 1675 mLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~Vfq~L~~LRq 1754 (1806)
||||.|+||.+.||+|.++++.|+||+.|++.|+.+..+.. ..+. .+.. .+....+..+..|||
T Consensus 584 ~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~----------~~Lt--KG~~----g~~~~lLNimmELkK 647 (1373)
T KOG0384|consen 584 LLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNF----------SALT--KGAK----GSTPSLLNIMMELKK 647 (1373)
T ss_pred HHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhH----------HHHh--ccCC----CCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999987654 1111 1111 122678999999999
Q ss_pred hhcCccccCCCCCcchHHhhhhhcCCCCCchh-hhhhhcccchhcc
Q 000237 1755 LCSHPLLVLGDKSPESLLCHLSELFPGSSDII-SELHKASSLSQIS 1799 (1806)
Q Consensus 1755 iCnHP~LV~~~~~pe~~~~~~~~L~~~~~~~l-~di~~s~Kl~aL~ 1799 (1806)
|||||+|+.+....-.. ...+ .. ....| .=|+.|+||+.|+
T Consensus 648 ccNHpyLi~gaee~~~~-~~~~--~~-~d~~L~~lI~sSGKlVLLD 689 (1373)
T KOG0384|consen 648 CCNHPYLIKGAEEKILG-DFRD--KM-RDEALQALIQSSGKLVLLD 689 (1373)
T ss_pred hcCCccccCcHHHHHHH-hhhh--cc-hHHHHHHHHHhcCcEEeHH
Confidence 99999999764432221 2111 00 01112 2478899999885
No 10
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.6e-49 Score=492.58 Aligned_cols=297 Identities=35% Similarity=0.651 Sum_probs=264.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIE 1521 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~ 1521 (1806)
..++|++||+.|++||..+++++.+||||||||||||+|+|+++++++...... +|.|||+|.+.+.+|..||.
T Consensus 391 ~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~------GP~LvivPlstL~NW~~Ef~ 464 (1157)
T KOG0386|consen 391 QGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQ------GPFLIIVPLSTLVNWSSEFP 464 (1157)
T ss_pred cCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccC------CCeEEeccccccCCchhhcc
Confidence 357999999999999999999999999999999999999999999999876543 89999999999999999999
Q ss_pred HhhccCCceEEEEecChhHHHHHHhhh--cCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHH-Hh
Q 000237 1522 KFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK-QL 1598 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~~~R~~l~~~l--~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk-~L 1598 (1806)
+|. |.+..+.|.|++..|..+..++ ++++|++|||+.+-++...|.++.|.|+||||+|++||..++++..+. ..
T Consensus 465 kWa--PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y 542 (1157)
T KOG0386|consen 465 KWA--PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHY 542 (1157)
T ss_pred ccc--cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhccc
Confidence 999 9999999999999998877654 789999999999999999999999999999999999999999999998 77
Q ss_pred hhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhhcceeeee
Q 000237 1599 KAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRR 1678 (1806)
Q Consensus 1599 ~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L~PfmLRR 1678 (1806)
.+.+|++|||||+||++.|||+||+||-|..|.+...|..+|..|+....+.. +-..+.....+++||+.+.||+|||
T Consensus 543 ~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~--eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386|consen 543 RAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKV--ELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred cchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcc--cccchHHHHHHHHHHHhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999998877422 1223455678999999999999999
Q ss_pred ehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCccccccHHHHHHHHHHHHHhhcC
Q 000237 1679 TKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSH 1758 (1806)
Q Consensus 1679 tKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~Vfq~L~~LRqiCnH 1758 (1806)
.|++|..+||.|++.++.|+||..|+-+|..+.++-. +.... . ........++..+..|||||||
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~------------l~~d~-~--~g~~g~k~L~N~imqLRKiCNH 685 (1157)
T KOG0386|consen 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQ------------LLKDT-A--KGKKGYKPLFNTIMQLRKLCNH 685 (1157)
T ss_pred hhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCC------------CCcCc-h--hccccchhhhhHhHHHHHhcCC
Confidence 9999999999999999999999999999999865422 11111 0 0113456788889999999999
Q ss_pred ccccC
Q 000237 1759 PLLVL 1763 (1806)
Q Consensus 1759 P~LV~ 1763 (1806)
|+++.
T Consensus 686 P~lf~ 690 (1157)
T KOG0386|consen 686 PYLFA 690 (1157)
T ss_pred chhhh
Confidence 99993
No 11
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=5.6e-44 Score=414.33 Aligned_cols=285 Identities=35% Similarity=0.564 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHh---------hcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHH
Q 000237 1449 YQQEGINWLAFLK---------RFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFE 1519 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~---------~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~E 1519 (1806)
||++||+||...+ ...+|||||||||+|||+++++++..+...... ....++|||||++++.+|.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~----~~~~~~LIv~P~~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQ----RGEKKTLIVVPSSLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTT----SS-S-EEEEE-TTTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcccc----ccccceeEeeccchhhhhhhh
Confidence 8999999999998 777889999999999999999999866553321 112469999999999999999
Q ss_pred HHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHH-----hhHhhhccccceEEEEcccccccChhhHHHHH
Q 000237 1520 IEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVR-----KDADYLGQLLWNYCILDEGHIIKNSKSKITVA 1594 (1806)
Q Consensus 1520 i~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr-----~di~~L~~i~w~~VILDEaH~IKN~~Sk~ska 1594 (1806)
+.+|++...+++++|.|....+.........++++|+||+.++ ...+.+....|++||+||+|.+||..++.+++
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~ 156 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKA 156 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccc
Confidence 9999965578999999988455455556788999999999999 77788888999999999999999999999999
Q ss_pred HHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhhcce
Q 000237 1595 VKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPF 1674 (1806)
Q Consensus 1595 lk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L~Pf 1674 (1806)
+..+++.+||+|||||++|++.|+|++++||.|..+++...|.+.|..+ .........++|+..+.+|
T Consensus 157 l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~------------~~~~~~~~~~~L~~~l~~~ 224 (299)
T PF00176_consen 157 LRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP------------DKENSYENIERLRELLSEF 224 (299)
T ss_dssp HHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH------------HHTHHHHHHHHHHHHHCCC
T ss_pred ccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh------------ccccccccccccccccchh
Confidence 9999999999999999999999999999999999999999999998765 2344556788999999999
Q ss_pred eeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCccccccHHHHHHHHHHHHH
Q 000237 1675 LLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLK 1754 (1806)
Q Consensus 1675 mLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~Vfq~L~~LRq 1754 (1806)
++||+++++..+||++.++++.|+||+.|+++|+++..... ....... .........+++.+.+|||
T Consensus 225 ~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~lr~ 291 (299)
T PF00176_consen 225 MIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEAR----------ENLKQSS---RKKSKKLSSLLQILKRLRQ 291 (299)
T ss_dssp EECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHG----------GCCTT-T-----TCHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHH----------HHHHhhc---ccchhhHHHHHHHHHHHHH
Confidence 99999999988999999999999999999999999876553 1111111 1112567899999999999
Q ss_pred hhcCcccc
Q 000237 1755 LCSHPLLV 1762 (1806)
Q Consensus 1755 iCnHP~LV 1762 (1806)
+||||.||
T Consensus 292 ~c~hp~l~ 299 (299)
T PF00176_consen 292 VCNHPYLV 299 (299)
T ss_dssp HHH-THHC
T ss_pred HhCCcccC
Confidence 99999986
No 12
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-43 Score=443.80 Aligned_cols=339 Identities=29% Similarity=0.420 Sum_probs=275.5
Q ss_pred CccCcccccccchHHHHHHHHHHHHh------hcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec
Q 000237 1436 YKLGTELKVTLRRYQQEGINWLAFLK------RFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP 1509 (1806)
Q Consensus 1436 ~~ip~~lk~~LRpYQ~eGV~wL~~l~------~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP 1509 (1806)
.-+-+.++..|||||++|++||+... +..+|||+||+||+|||+|+|+++..+....+.. .+.+.+.|||||
T Consensus 229 v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~--~~~~~k~lVV~P 306 (776)
T KOG0390|consen 229 VVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQA--KPLINKPLVVAP 306 (776)
T ss_pred EEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCc--cccccccEEEcc
Confidence 34445689999999999999997643 1456789999999999999999999988765432 224578899999
Q ss_pred cccHHHHHHHHHHhhccCCceEEEEecChhHH-HHHHh------hhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccc
Q 000237 1510 STLVGHWAFEIEKFIDVSLMSTLQYVGSAQDR-IALRE------QFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGH 1582 (1806)
Q Consensus 1510 ~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R-~~l~~------~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH 1582 (1806)
.+|+.+|++||.+|.+...+.++.+.|..++. .+... ..-.+-|.|.||++++.+...+....++++|+||||
T Consensus 307 ~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 307 SSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCC
Confidence 99999999999999976588888888887751 11111 122456999999999999999999999999999999
Q ss_pred cccChhhHHHHHHHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHH
Q 000237 1583 IIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVL 1662 (1806)
Q Consensus 1583 ~IKN~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ 1662 (1806)
+.||..|.+++++.+++.++|++||||||||++.|+|++++|.+|++||+...|++.|..|+..+++...+..+.+. ..
T Consensus 387 rlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~-~~ 465 (776)
T KOG0390|consen 387 RLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER-EE 465 (776)
T ss_pred CccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888887776 55
Q ss_pred HHHHHHHhhcceeeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCccccccH
Q 000237 1663 AMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKAS 1742 (1806)
Q Consensus 1663 ale~L~k~L~PfmLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~~ 1742 (1806)
.+.+|..++.+|++||+.+...+.||++.++++.|.+|+.|+++|+.+.+... . . ...
T Consensus 466 rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~-~--------~-------------~~~ 523 (776)
T KOG0390|consen 466 RLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMK-M--------R-------------TLK 523 (776)
T ss_pred HHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHH-h--------h-------------hhh
Confidence 59999999999999999988899999999999999999999999999977531 1 0 111
Q ss_pred HHHHHHHHHHHHhhcCccccCCCCCcch-HHhh--hhhcCC-CCCchhhhhhhcccchhcc
Q 000237 1743 THVFQALQYLLKLCSHPLLVLGDKSPES-LLCH--LSELFP-GSSDIISELHKASSLSQIS 1799 (1806)
Q Consensus 1743 ~~Vfq~L~~LRqiCnHP~LV~~~~~pe~-~~~~--~~~L~~-~~~~~l~di~~s~Kl~aL~ 1799 (1806)
+..|..+++|+++||||.|+.-....+. .... ..-+.+ .....-.+...++|+..|.
T Consensus 524 ~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~ 584 (776)
T KOG0390|consen 524 GYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLV 584 (776)
T ss_pred cchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHH
Confidence 2367889999999999999962211111 0000 011111 0233445666788888884
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6e-43 Score=421.62 Aligned_cols=319 Identities=30% Similarity=0.471 Sum_probs=256.4
Q ss_pred CCccCcccccccchHHHHHHHHHHHHhhc-CCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCcc-CCCcEEEEecccc
Q 000237 1435 DYKLGTELKVTLRRYQQEGINWLAFLKRF-KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIE-EIHPSLIICPSTL 1512 (1806)
Q Consensus 1435 ~~~ip~~lk~~LRpYQ~eGV~wL~~l~~~-~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~-~~~ptLIVcP~SL 1512 (1806)
-++-|.+++..|.|||+.|+.||..+... +.|||||||||||||+.+|++|......++...+.. ...++|||||.+|
T Consensus 315 lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSl 394 (901)
T KOG4439|consen 315 LTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASL 394 (901)
T ss_pred ccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHH
Confidence 47788999999999999999999877654 457899999999999999999988776555443222 2247999999999
Q ss_pred HHHHHHHHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhh----------HhhhccccceEEEEcccc
Q 000237 1513 VGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKD----------ADYLGQLLWNYCILDEGH 1582 (1806)
Q Consensus 1513 l~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~d----------i~~L~~i~w~~VILDEaH 1582 (1806)
+.||..|+++-.....++|++|+|+.+ |..-.+.+.+||||||||..+.+. ...|..+.|.+|||||||
T Consensus 395 i~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH 473 (901)
T KOG4439|consen 395 IHQWEAEVARRLEQNALSVYLYHGPNK-REISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAH 473 (901)
T ss_pred HHHHHHHHHHHHhhcceEEEEecCCcc-ccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhh
Confidence 999999999999888999999999985 444456788999999999999772 235778899999999999
Q ss_pred cccChhhHHHHHHHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHH
Q 000237 1583 IIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVL 1662 (1806)
Q Consensus 1583 ~IKN~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ 1662 (1806)
+|||++|+.+.|++.|++.+||+||||||||+.-|+|+|+.||+...|++.+.|++..-.+-..
T Consensus 474 ~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~---------------- 537 (901)
T KOG4439|consen 474 NIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKG---------------- 537 (901)
T ss_pred hhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCcccc----------------
Confidence 9999999999999999999999999999999999999999999999999999998886432111
Q ss_pred HHHHHHHhhcceeeeeehhhhhc-----CCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhh-ccCC--
Q 000237 1663 AMEALHKQVMPFLLRRTKDEVLS-----DLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESAD-KGEG-- 1734 (1806)
Q Consensus 1663 ale~L~k~L~PfmLRRtKedVl~-----dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~-~~~~-- 1734 (1806)
.-+++.=+.++.||||||.+.-. .||++..+.+.++|+..+...|+-+..... .....++...+-.. ..+.
T Consensus 538 g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~ask-k~~kq~L~~~e~~~~~~~~~s 616 (901)
T KOG4439|consen 538 GANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASK-KLFKQFLLQREDRNNDGGYQS 616 (901)
T ss_pred chhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHH-HHHHHHHHhhhhhccccCccc
Confidence 12456667789999999998765 699999999999999999999998865432 22222111111000 0000
Q ss_pred -----------------------CccccccHHHHHHHHHHHHHhhcCccccCCCCCcchH
Q 000237 1735 -----------------------NNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESL 1771 (1806)
Q Consensus 1735 -----------------------~~~~~~~~~~Vfq~L~~LRqiCnHP~LV~~~~~pe~~ 1771 (1806)
.+......++|+..|.+|||+||||.+......++..
T Consensus 617 ~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~ 676 (901)
T KOG4439|consen 617 RNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEF 676 (901)
T ss_pred cchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHh
Confidence 0001245688999999999999999998877777654
No 14
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=5.6e-42 Score=418.04 Aligned_cols=310 Identities=23% Similarity=0.362 Sum_probs=260.7
Q ss_pred CCCccCcccccccchHHHHHHHHHHHHh---------hcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcE
Q 000237 1434 DDYKLGTELKVTLRRYQQEGINWLAFLK---------RFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPS 1504 (1806)
Q Consensus 1434 ~~~~ip~~lk~~LRpYQ~eGV~wL~~l~---------~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~pt 1504 (1806)
+.+.++..+...|+|||..||+||+... ..|.|||||+-||||||+|+|+|+...+..-. .++.+.
T Consensus 657 ~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~k-----lg~kta 731 (1567)
T KOG1015|consen 657 PLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDK-----LGFKTA 731 (1567)
T ss_pred chhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhc-----cCCceE
Confidence 3567888899999999999999997633 35678999999999999999999987665433 346899
Q ss_pred EEEeccccHHHHHHHHHHhhcc-C---CceEEE---EecChhHHHHHHhhhcCCcEEEeeHHHHHhhH------------
Q 000237 1505 LIICPSTLVGHWAFEIEKFIDV-S---LMSTLQ---YVGSAQDRIALREQFDKHNVIITSYDVVRKDA------------ 1565 (1806)
Q Consensus 1505 LIVcP~SLl~qW~~Ei~kf~~~-p---~l~vli---y~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di------------ 1565 (1806)
|||||.+++.||.+||++|... . .+.|.. |......+..+..|.....|.|+.|+++|+..
T Consensus 732 LvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke 811 (1567)
T KOG1015|consen 732 LVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKE 811 (1567)
T ss_pred EEEcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHH
Confidence 9999999999999999999842 1 233332 22223334556667788899999999998631
Q ss_pred ---hhhccccceEEEEcccccccChhhHHHHHHHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhcc
Q 000237 1566 ---DYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGK 1642 (1806)
Q Consensus 1566 ---~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~k 1642 (1806)
..+..-.+++||+||||.|||.+|.+++|+.++++.+||+|||||+|||+.|+|++++|+.||+||+.++|+++|.+
T Consensus 812 ~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvN 891 (1567)
T KOG1015|consen 812 IFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVN 891 (1567)
T ss_pred HHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcC
Confidence 22334458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccccCCChhhHHHHHHHHHHHHHhhcceeeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhh
Q 000237 1643 PLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSM 1722 (1806)
Q Consensus 1643 Pi~~~r~~~~s~ke~e~g~~ale~L~k~L~PfmLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~ 1722 (1806)
||.+|+..+++..+........+-|+.+|..|+-|+-...+...||||++++|++.||+.|..+|+.|.. ..
T Consensus 892 pI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~-h~------- 963 (1567)
T KOG1015|consen 892 PIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD-HL------- 963 (1567)
T ss_pred ccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh-hc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 32
Q ss_pred hhchhhhhc-cCCCccccccHHHHHHHHHHHHHhhcCccccC
Q 000237 1723 VKVDESADK-GEGNNVSAKASTHVFQALQYLLKLCSHPLLVL 1763 (1806)
Q Consensus 1723 ~~~~~~~~~-~~~~~~~~~~~~~Vfq~L~~LRqiCnHP~LV~ 1763 (1806)
...... .++. .....+|+.++-|++|-+||+.+.
T Consensus 964 ---~~~G~d~eg~~----g~~arlf~dfqmlsrIwtHP~~lq 998 (1567)
T KOG1015|consen 964 ---TGVGNDSEGGR----GAGARLFQDFQMLSRIWTHPWCLQ 998 (1567)
T ss_pred ---cccCCcccccc----chhhhHHHHHHHHHHHhcCCCcee
Confidence 111111 1111 134678999999999999998763
No 15
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-40 Score=385.75 Aligned_cols=301 Identities=29% Similarity=0.454 Sum_probs=243.5
Q ss_pred CCCccCcccccccchHHHHHHHHHHHHhh-cCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecccc
Q 000237 1434 DDYKLGTELKVTLRRYQQEGINWLAFLKR-FKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTL 1512 (1806)
Q Consensus 1434 ~~~~ip~~lk~~LRpYQ~eGV~wL~~l~~-~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SL 1512 (1806)
+..+.|.++...|.|||++|+.|+...+. .-.|||||||||+|||+|+|+++.+.. +..|+|||||.-.
T Consensus 173 e~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----------~ra~tLVvaP~VA 242 (791)
T KOG1002|consen 173 ERAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----------DRAPTLVVAPTVA 242 (791)
T ss_pred hcccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----------ccCCeeEEccHHH
Confidence 45678889999999999999999987766 456889999999999999999998732 1268999999999
Q ss_pred HHHHHHHHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhh-----------------HhhhccccceE
Q 000237 1513 VGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKD-----------------ADYLGQLLWNY 1575 (1806)
Q Consensus 1513 l~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~d-----------------i~~L~~i~w~~ 1575 (1806)
+.||.+||.+++. ..+++++|+|..+. .-.+.+..||||+|||.++.+. ...|.++.|++
T Consensus 243 lmQW~nEI~~~T~-gslkv~~YhG~~R~--~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~R 319 (791)
T KOG1002|consen 243 LMQWKNEIERHTS-GSLKVYIYHGAKRD--KNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYR 319 (791)
T ss_pred HHHHHHHHHHhcc-CceEEEEEeccccc--CCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeee
Confidence 9999999999997 78999999998643 4557788999999999988432 23577889999
Q ss_pred EEEcccccccChhhHHHHHHHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCc-----------------------
Q 000237 1576 CILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGT----------------------- 1632 (1806)
Q Consensus 1576 VILDEaH~IKN~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt----------------------- 1632 (1806)
||+||||.||+..|..++|+..|.+.+||+|||||+||++.|||||+.||+..+|..
T Consensus 320 iIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~ 399 (791)
T KOG1002|consen 320 IILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDH 399 (791)
T ss_pred eehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCc
Confidence 999999999999999999999999999999999999999999999999998765432
Q ss_pred --------hhHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhhcceeeeeehhhhhcC--CCCcEEEEEEecCCHH
Q 000237 1633 --------ERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSD--LPEKIIQDRYCDLSAV 1702 (1806)
Q Consensus 1633 --------~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L~PfmLRRtKedVl~d--LPpKie~vv~ceLSp~ 1702 (1806)
.-.|+....+||...... -.|.++....|..+..+|+||||-+-..| |||.+..+..=-++.+
T Consensus 400 c~h~~m~h~~~~n~~mlk~IqkfG~e-------GpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~e 472 (791)
T KOG1002|consen 400 CSHNIMQHTCFFNHFMLKPIQKFGVE-------GPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEE 472 (791)
T ss_pred ccchhhhhhhhhcccccccchhhccc-------CchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhH
Confidence 111222224555433221 23556777889999999999999765444 8999999999999999
Q ss_pred HHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCccccccHHHHHHHHHHHHHhhcCccccCCC
Q 000237 1703 QLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGD 1765 (1806)
Q Consensus 1703 Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~Vfq~L~~LRqiCnHP~LV~~~ 1765 (1806)
++.+|+.+.....+. . +.+...+ ....++.+||..+++|||++.||+||+..
T Consensus 473 E~D~YeSLY~dSkrk-f------ntyieeG----vvlNNYAnIF~LitRmRQ~aDHP~LVl~S 524 (791)
T KOG1002|consen 473 EKDLYESLYKDSKRK-F------NTYIEEG----VVLNNYANIFTLITRMRQAADHPDLVLYS 524 (791)
T ss_pred HHHHHHHHHHhhHHh-h------hhHHhhh----hhhhhHHHHHHHHHHHHHhccCcceeeeh
Confidence 999999987654321 1 2222222 22367899999999999999999999763
No 16
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=8.7e-39 Score=421.83 Aligned_cols=309 Identities=39% Similarity=0.654 Sum_probs=259.0
Q ss_pred cccccccchHHHHHHHHHH-HHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHH
Q 000237 1440 TELKVTLRRYQQEGINWLA-FLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAF 1518 (1806)
Q Consensus 1440 ~~lk~~LRpYQ~eGV~wL~-~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~ 1518 (1806)
..+..+||+||.+|++||. ++...+.+||||||||||||+|+|+++.+...... ...+|.|||||.+++.||.+
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~-----~~~~~~liv~p~s~~~nw~~ 407 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIK-----VYLGPALIVVPASLLSNWKR 407 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhccc-----CCCCCeEEEecHHHHHHHHH
Confidence 5677899999999999999 89999999999999999999999999987433221 11479999999999999999
Q ss_pred HHHHhhccCCce-EEEEecChhH----HHHHHhhhcC-----CcEEEeeHHHHHh---hHhhhccccceEEEEccccccc
Q 000237 1519 EIEKFIDVSLMS-TLQYVGSAQD----RIALREQFDK-----HNVIITSYDVVRK---DADYLGQLLWNYCILDEGHIIK 1585 (1806)
Q Consensus 1519 Ei~kf~~~p~l~-vliy~Gs~~~----R~~l~~~l~~-----~dVVITSYe~Lr~---di~~L~~i~w~~VILDEaH~IK 1585 (1806)
|+.+|. |.++ +..++|.... +..+...+.. +++++|||+.+++ +...+..+.|+++|+||+|+||
T Consensus 408 e~~k~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 408 EFEKFA--PDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred HHhhhC--ccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHh
Confidence 999999 8888 9999998853 4455444432 8999999999999 9999999999999999999999
Q ss_pred ChhhHHHHHHHHhhhcceEEeccCCCCCChhhHHhhhh-hhCCCCCC-chhHHHHHhccchhhccccCCChhhHHHHHHH
Q 000237 1586 NSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFD-FLMPGFLG-TERQFQATYGKPLVAARDSKCSAKDAEAGVLA 1663 (1806)
Q Consensus 1586 N~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~-FL~Pg~Lg-t~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~a 1663 (1806)
|..+..+++++.+++.+|++|||||++|++.|||++++ |++|++++ +...|.++|.+|+....+... .+.....
T Consensus 486 n~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~ 561 (866)
T COG0553 486 NDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP----LEARELG 561 (866)
T ss_pred hhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc----hhhHHHH
Confidence 99999999999999999999999999999999999999 99999999 569999999999988776543 3344456
Q ss_pred HHHHHHhhcceeeeeehhh--hhcCCCCcEEEEEEecCCHHHHHHHHHHHHhH--hHHHHhhhhhchhhhhccCCCcccc
Q 000237 1664 MEALHKQVMPFLLRRTKDE--VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQ--AKQEISSMVKVDESADKGEGNNVSA 1739 (1806)
Q Consensus 1664 le~L~k~L~PfmLRRtKed--Vl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~--~~~~i~s~~~~~~~~~~~~~~~~~~ 1739 (1806)
...|++.+.||++||+|.+ +..+||+|++++++|+|++.|+++|+.+.... ..+.+.......... ....
T Consensus 562 ~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-- 635 (866)
T COG0553 562 IELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDE----NRIG-- 635 (866)
T ss_pred HHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----cccc--
Confidence 6679999999999999999 99999999999999999999999999998732 111111110000000 0000
Q ss_pred ccHHHHHHHHHHHHHhhcCccccCCC
Q 000237 1740 KASTHVFQALQYLLKLCSHPLLVLGD 1765 (1806)
Q Consensus 1740 ~~~~~Vfq~L~~LRqiCnHP~LV~~~ 1765 (1806)
....+++..+.+||++||||.++...
T Consensus 636 ~~~~~~l~~~~~lr~~~~~p~l~~~~ 661 (866)
T COG0553 636 DSELNILALLTRLRQICNHPALVDEG 661 (866)
T ss_pred chhhHHHHHHHHHHHhccCccccccc
Confidence 03688999999999999999999876
No 17
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=5.2e-36 Score=360.28 Aligned_cols=311 Identities=26% Similarity=0.394 Sum_probs=255.2
Q ss_pred cCCCCCCCccCcccccccchHHHHHHHHHHH-----H----hhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCcc
Q 000237 1429 DNSHIDDYKLGTELKVTLRRYQQEGINWLAF-----L----KRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIE 1499 (1806)
Q Consensus 1429 d~~~i~~~~ip~~lk~~LRpYQ~eGV~wL~~-----l----~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~ 1499 (1806)
.|..-++..+-+.+...++|||+-||+||+. + ...|.|||||+.||||||+|+|+|+.-...+..
T Consensus 238 HPeeee~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~------ 311 (1387)
T KOG1016|consen 238 HPEEEEDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTK------ 311 (1387)
T ss_pred CCCCCcceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCc------
Confidence 3444456666677899999999999999853 1 234678999999999999999999977665433
Q ss_pred CCCcEEEEeccccHHHHHHHHHHhhcc---------CCceEEEEecCh---hHHHHHHh-hhcCCcEEEeeHHHHHhhH-
Q 000237 1500 EIHPSLIICPSTLVGHWAFEIEKFIDV---------SLMSTLQYVGSA---QDRIALRE-QFDKHNVIITSYDVVRKDA- 1565 (1806)
Q Consensus 1500 ~~~ptLIVcP~SLl~qW~~Ei~kf~~~---------p~l~vliy~Gs~---~~R~~l~~-~l~~~dVVITSYe~Lr~di- 1565 (1806)
.+.+|+|+|-..+.||..||..|++. ..+.+.+..... ..|.++.. |....+|+++.|+++|-.+
T Consensus 312 -AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~l 390 (1387)
T KOG1016|consen 312 -AKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLIL 390 (1387)
T ss_pred -cceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHH
Confidence 27899999999999999999999952 123444443322 34555444 5577899999999997421
Q ss_pred -------------------------------------hhhccccceEEEEcccccccChhhHHHHHHHHhhhcceEEecc
Q 000237 1566 -------------------------------------DYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSG 1608 (1806)
Q Consensus 1566 -------------------------------------~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L~A~~RLlLTG 1608 (1806)
+.|-.-..++||+||||+|||....++.+++.++.++|+.|||
T Consensus 391 k~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTG 470 (1387)
T KOG1016|consen 391 KTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTG 470 (1387)
T ss_pred hcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEec
Confidence 1122335899999999999999999999999999999999999
Q ss_pred CCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhhcceeeeeehhhhhcCCC
Q 000237 1609 TPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLP 1688 (1806)
Q Consensus 1609 TPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L~PfmLRRtKedVl~dLP 1688 (1806)
-|+|||+.|+|++++|++|.+||+.++|.++|.+||..|...+++..+........+-||.++..|+-||+..-+..-||
T Consensus 471 YPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP 550 (1387)
T KOG1016|consen 471 YPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILP 550 (1387)
T ss_pred cccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred CcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCccccccHHHHHHHHHHHHHhhcCccccC
Q 000237 1689 EKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVL 1763 (1806)
Q Consensus 1689 pKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~Vfq~L~~LRqiCnHP~LV~ 1763 (1806)
.|.++++.+.||..||++|+.|.-... .+..... -...+.+.++.-..||-|||..+.
T Consensus 551 ~k~EyViLvr~s~iQR~LY~~Fm~d~~----------r~~~~~~-------~~~~NPLkAF~vCcKIWNHPDVLY 608 (1387)
T KOG1016|consen 551 EKKEYVILVRKSQIQRQLYRNFMLDAK----------REIAANN-------DAVFNPLKAFSVCCKIWNHPDVLY 608 (1387)
T ss_pred cccceEEEEeHHHHHHHHHHHHHHHHH----------Hhhcccc-------ccccChHHHHHHHHHhcCChHHHH
Confidence 999999999999999999999974433 1111111 112356778888999999999874
No 18
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=99.97 E-value=2.3e-32 Score=342.00 Aligned_cols=280 Identities=31% Similarity=0.480 Sum_probs=246.9
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHh
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKF 1523 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf 1523 (1806)
+.|.+||.+|++|+.+.+..+-.+|||||||+|||+|++.++..+..... ..+|.||++|.+.+-+|..|+..|
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~------~~~P~Lv~ap~sT~~nwe~e~~~w 367 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIH------SPGPPLVVAPLSTIVNWEREFELW 367 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccC------CCCCceeeccCccccCCCCchhcc
Confidence 78999999999999999999999999999999999999999987765432 227999999999999999999999
Q ss_pred hccCCceEEEEecChhHHHHHHh----------------------hhcCCcEEEeeHHHHHhhHhhhccccceEEEEccc
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALRE----------------------QFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEG 1581 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~----------------------~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEa 1581 (1806)
+ |.+.+..|.|+.+.|...++ .-..+.+..++|++.-.+...+..+.|..+|+||+
T Consensus 368 a--p~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livde~ 445 (696)
T KOG0383|consen 368 A--PSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVDEA 445 (696)
T ss_pred C--CCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEeech
Confidence 9 89999999999988766554 11245789999999999999999999999999999
Q ss_pred ccccChhhHHHHHHHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHH
Q 000237 1582 HIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGV 1661 (1806)
Q Consensus 1582 H~IKN~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~ 1661 (1806)
|++||..|++.+.+......++++|||||.||++.||+++|+||.|+.+++...|.+.|... ...
T Consensus 446 ~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~---------------~~~ 510 (696)
T KOG0383|consen 446 HRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI---------------SCE 510 (696)
T ss_pred hhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---------------hHH
Confidence 99999999999999999999999999999999999999999999999999999999988542 234
Q ss_pred HHHHHHHHhhcceeeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCcccccc
Q 000237 1662 LAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741 (1806)
Q Consensus 1662 ~ale~L~k~L~PfmLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~ 1741 (1806)
..++.||.++.|+|+||.|.||++..|+|.+-++.++|++.|+++|+.+...-. ..+.. + ..
T Consensus 511 ~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~----------~~l~~-~-------~~ 572 (696)
T KOG0383|consen 511 EQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNW----------QGLLA-G-------VH 572 (696)
T ss_pred HHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCCh----------HHHhh-c-------ch
Confidence 578899999999999999999999999999999999999999999999876433 11111 1 23
Q ss_pred HHHHHHHHHHHHHhhcCccccCC
Q 000237 1742 STHVFQALQYLLKLCSHPLLVLG 1764 (1806)
Q Consensus 1742 ~~~Vfq~L~~LRqiCnHP~LV~~ 1764 (1806)
+...+.++..|||+||||+++..
T Consensus 573 ~~s~~n~~mel~K~~~hpy~~~~ 595 (696)
T KOG0383|consen 573 QYSLLNIVMELRKQCNHPYLSPL 595 (696)
T ss_pred hHHHHHHHHHHHHhhcCcccCcc
Confidence 45667899999999999999976
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=1.6e-30 Score=329.82 Aligned_cols=293 Identities=30% Similarity=0.469 Sum_probs=234.8
Q ss_pred hHHHHHHHHHHHHhhc-CCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhcc
Q 000237 1448 RYQQEGINWLAFLKRF-KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDV 1526 (1806)
Q Consensus 1448 pYQ~eGV~wL~~l~~~-~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~ 1526 (1806)
.+|..+-.|+...... -.|||++||||+|||+++|+++...........+....+.+|||||.+++.||..|+.+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 5555554444433332 357899999999999999999986543222000112348899999999999999999777776
Q ss_pred CCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHhhhcceEEe
Q 000237 1527 SLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLIL 1606 (1806)
Q Consensus 1527 p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L~A~~RLlL 1606 (1806)
..+.+++|+| |......+..|+||+|||+++.+ ..+..+.|.++|+||+|.|+|++++.++++..+++.+||+|
T Consensus 215 ~~l~v~v~~g----r~kd~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcL 288 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTKDKSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCL 288 (674)
T ss_pred cceEEEEecc----cccccchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeee
Confidence 7899999999 44455667889999999999997 55667999999999999999999999999999999999999
Q ss_pred ccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhhcceeeeeehhhh---
Q 000237 1607 SGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEV--- 1683 (1806)
Q Consensus 1607 TGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L~PfmLRRtKedV--- 1683 (1806)
||||+||++.|||+++.|+.-.++..+..|...+..|+..+.. ......++..+.++++||+|..-
T Consensus 289 tgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~-----------~~~~k~l~~~L~~v~lrrtK~~~~~g 357 (674)
T KOG1001|consen 289 TGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY-----------KEGVKTLQGILKKVMLRRTKEMEVDG 357 (674)
T ss_pred cCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH-----------HHHHHHHHHHHHHHHhcccccccccC
Confidence 9999999999999999999999999999999999988865543 23567788889999999999732
Q ss_pred --hcCCCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCccccccHHHHHHHHHHHHHhhcCccc
Q 000237 1684 --LSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLL 1761 (1806)
Q Consensus 1684 --l~dLPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~Vfq~L~~LRqiCnHP~L 1761 (1806)
...|||++..+++++++..++..|.....+...+ . ......+ .....+..++..+.+|||+|+||.|
T Consensus 358 k~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~-~------~~~~~~~----~~~~~Y~~~l~~lLrlrq~c~h~~l 426 (674)
T KOG1001|consen 358 KPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQ-F------SNYANEG----TVSSTYAFFLKNLLRLRQACDHSLL 426 (674)
T ss_pred ccccccCcceeEeeeccccHhHHHHHHHHhhhhhhH-H------HHHhhhc----hhhhhHHHHHHHHHHHHHHccchHh
Confidence 3379999999999999999999999997765422 1 1111111 1125688999999999999999999
Q ss_pred cCCCCCc
Q 000237 1762 VLGDKSP 1768 (1806)
Q Consensus 1762 V~~~~~p 1768 (1806)
+......
T Consensus 427 v~~~~~~ 433 (674)
T KOG1001|consen 427 VMYEMDS 433 (674)
T ss_pred hhhhhhc
Confidence 9865443
No 20
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.97 E-value=1.3e-30 Score=306.10 Aligned_cols=250 Identities=27% Similarity=0.365 Sum_probs=197.3
Q ss_pred cCcccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHH
Q 000237 1438 LGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWA 1517 (1806)
Q Consensus 1438 ip~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~ 1517 (1806)
+|+.+-..|.|||++||+|-. ..++.++||||||||||+|+||+..++..+ +|.|||||.++...|.
T Consensus 191 ~d~kLvs~LlPFQreGv~faL---~RgGR~llADeMGLGKTiQAlaIA~yyraE----------wplliVcPAsvrftWa 257 (689)
T KOG1000|consen 191 MDPKLVSRLLPFQREGVIFAL---ERGGRILLADEMGLGKTIQALAIARYYRAE----------WPLLIVCPASVRFTWA 257 (689)
T ss_pred cCHHHHHhhCchhhhhHHHHH---hcCCeEEEecccccchHHHHHHHHHHHhhc----------CcEEEEecHHHhHHHH
Confidence 356688899999999998753 566778999999999999999998775432 8999999999999999
Q ss_pred HHHHHhhccCCceE-EEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHH
Q 000237 1518 FEIEKFIDVSLMST-LQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK 1596 (1806)
Q Consensus 1518 ~Ei~kf~~~p~l~v-liy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk 1596 (1806)
+++.+|+ |.... .+..++. ++. ..-.....|.|+||+.+....+.+..-.|..||+||+|++|+.++++++++.
T Consensus 258 ~al~r~l--ps~~pi~vv~~~~-D~~--~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~ 332 (689)
T KOG1000|consen 258 KALNRFL--PSIHPIFVVDKSS-DPL--PDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAAT 332 (689)
T ss_pred HHHHHhc--ccccceEEEeccc-CCc--cccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhh
Confidence 9999999 44433 2222222 211 1111235699999999999989999999999999999999999999999998
Q ss_pred Hh--hhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhhcc-
Q 000237 1597 QL--KAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMP- 1673 (1806)
Q Consensus 1597 ~L--~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L~P- 1673 (1806)
-+ .+.|.++|||||--.++.|||.++..++|-+|.+..+|-.+|+.--..... ..-.|-.++++|+-++..
T Consensus 333 dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~------~Dykg~tnl~EL~~lL~k~ 406 (689)
T KOG1000|consen 333 DLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFC------FDYKGCTNLEELAALLFKR 406 (689)
T ss_pred hHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCcccccee------eecCCCCCHHHHHHHHHHH
Confidence 88 789999999999999999999999999999999999999999863322211 112334577888888754
Q ss_pred eeeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHHHHH
Q 000237 1674 FLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSG 1712 (1806)
Q Consensus 1674 fmLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~~~~ 1712 (1806)
.|+||+|.+|+.+||||..++ .+...+.+-..-+++.+
T Consensus 407 lMIRRlK~dvL~qLPpKrr~V-v~~~~gr~da~~~~lv~ 444 (689)
T KOG1000|consen 407 LMIRRLKADVLKQLPPKRREV-VYVSGGRIDARMDDLVK 444 (689)
T ss_pred HHHHHHHHHHHhhCCccceEE-EEEcCCccchHHHHHHH
Confidence 589999999999999995444 44445555554454443
No 21
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.96 E-value=3.4e-28 Score=318.25 Aligned_cols=255 Identities=20% Similarity=0.271 Sum_probs=186.5
Q ss_pred ccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHH
Q 000237 1441 ELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEI 1520 (1806)
Q Consensus 1441 ~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei 1520 (1806)
+.+..|.|||.+.+.++. .+...+.+||||||||||+++++++..+...+ ..+|+|||||.+|+.||..|+
T Consensus 148 ~~~~~l~pHQl~~~~~vl--~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-------~~~rvLIVvP~sL~~QW~~El 218 (956)
T PRK04914 148 GARASLIPHQLYIAHEVG--RRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-------RAERVLILVPETLQHQWLVEM 218 (956)
T ss_pred cCCCCCCHHHHHHHHHHh--hccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-------CCCcEEEEcCHHHHHHHHHHH
Confidence 567889999999987653 34566789999999999999999987765432 237999999999999999999
Q ss_pred HHhhccCCceEEEEecChhHHHHH--HhhhcCCcEEEeeHHHHHhhH---hhhccccceEEEEcccccccC---hhhHHH
Q 000237 1521 EKFIDVSLMSTLQYVGSAQDRIAL--REQFDKHNVIITSYDVVRKDA---DYLGQLLWNYCILDEGHIIKN---SKSKIT 1592 (1806)
Q Consensus 1521 ~kf~~~p~l~vliy~Gs~~~R~~l--~~~l~~~dVVITSYe~Lr~di---~~L~~i~w~~VILDEaH~IKN---~~Sk~s 1592 (1806)
.++++ +.+.+|.+........ ...+..++++|+||+.++++. +.+....|++||+||||+++| ..|+.+
T Consensus 219 ~~kF~---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 219 LRRFN---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred HHHhC---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 88873 3445555443221110 134456889999999999754 456678999999999999995 356778
Q ss_pred HHHHHh--hhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhcc--chhh----ccccC-CChhhHH-----
Q 000237 1593 VAVKQL--KAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGK--PLVA----ARDSK-CSAKDAE----- 1658 (1806)
Q Consensus 1593 kalk~L--~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~k--Pi~~----~r~~~-~s~ke~e----- 1658 (1806)
+.+..+ +++++++|||||+||+..|+|++++||+|+.|+++..|.+.++. |+.. -...+ .+.....
T Consensus 296 ~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~l 375 (956)
T PRK04914 296 QVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGEL 375 (956)
T ss_pred HHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 999888 67899999999999999999999999999999999999875542 3210 00000 0111000
Q ss_pred ----------------------HHHHHHHHHHHh--hcceeeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHH
Q 000237 1659 ----------------------AGVLAMEALHKQ--VMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYE 1708 (1806)
Q Consensus 1659 ----------------------~g~~ale~L~k~--L~PfmLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe 1708 (1806)
+....+..|... ..++|+|+++.+|. ++|++..+.+.+++.+..+..+.
T Consensus 376 l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~ 448 (956)
T PRK04914 376 LGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIK 448 (956)
T ss_pred hcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHH
Confidence 011111222111 23799999999987 79999999999999876555443
No 22
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.91 E-value=4.4e-25 Score=281.65 Aligned_cols=283 Identities=26% Similarity=0.362 Sum_probs=214.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhHHHhh---------hcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEEEEec
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDIAERR---------ASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVG 1536 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~~~r~---------~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vliy~G 1536 (1806)
.++++|+||+|||...++.......... ........+.+|||||.+++.||-.||.++++ +.++++.|-|
T Consensus 376 ~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~-~~lKv~~Y~G 454 (1394)
T KOG0298|consen 376 RVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHIS-SLLKVLLYFG 454 (1394)
T ss_pred ceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhcc-ccceEEEEec
Confidence 3599999999999999988765421100 00111224899999999999999999999995 3369999999
Q ss_pred ChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh----------------------hccccceEEEEcccccccChhhHHHHH
Q 000237 1537 SAQDRIALREQFDKHNVIITSYDVVRKDADY----------------------LGQLLWNYCILDEGHIIKNSKSKITVA 1594 (1806)
Q Consensus 1537 s~~~R~~l~~~l~~~dVVITSYe~Lr~di~~----------------------L~~i~w~~VILDEaH~IKN~~Sk~ska 1594 (1806)
-.+.-..-...+.+||||+|||+++|+++.+ |..+.|++|++||+|.+....|..++.
T Consensus 455 irk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M 534 (1394)
T KOG0298|consen 455 IRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEM 534 (1394)
T ss_pred hhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHH
Confidence 7654322224677999999999999987532 345679999999999999999999999
Q ss_pred HHHhhhcceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhhcce
Q 000237 1595 VKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPF 1674 (1806)
Q Consensus 1595 lk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L~Pf 1674 (1806)
+..|.+.|||+.||||||+ +.||+.||.||.-.+|+....|-+...+++... ...+.+++.+...
T Consensus 535 ~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--------------a~~~~~~dl~~q~ 599 (1394)
T KOG0298|consen 535 VRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--------------AKCEPLLDLFKQL 599 (1394)
T ss_pred HHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--------------hhhhhHHHHHHhh
Confidence 9999999999999999999 999999999999888999988887776554322 2456788888888
Q ss_pred eeeeehhhhhcC--CCCcEEEEEEecCCHHHHHHHHHHHHhHhHHHHhhhh--hchhhhhccCCCccccccHHHHHHHHH
Q 000237 1675 LLRRTKDEVLSD--LPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMV--KVDESADKGEGNNVSAKASTHVFQALQ 1750 (1806)
Q Consensus 1675 mLRRtKedVl~d--LPpKie~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~--~~~~~~~~~~~~~~~~~~~~~Vfq~L~ 1750 (1806)
+-|+.|.+|..+ +||..+-+....+++.|..+|+..-.....+...... +...+....+....+......++..+.
T Consensus 600 l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~ 679 (1394)
T KOG0298|consen 600 LWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLL 679 (1394)
T ss_pred hhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHH
Confidence 999999999875 6888887888888888888887654433222221111 111221222223333455678999999
Q ss_pred HHHHhhcCccccCC
Q 000237 1751 YLLKLCSHPLLVLG 1764 (1806)
Q Consensus 1751 ~LRqiCnHP~LV~~ 1764 (1806)
+|||+||||..-..
T Consensus 680 rLRq~Cchplv~~~ 693 (1394)
T KOG0298|consen 680 RLRQACCHPLVGNS 693 (1394)
T ss_pred HHHHhhcccccccC
Confidence 99999999987643
No 23
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=4.9e-20 Score=235.45 Aligned_cols=163 Identities=20% Similarity=0.383 Sum_probs=125.2
Q ss_pred ccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHH
Q 000237 1441 ELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFE 1519 (1806)
Q Consensus 1441 ~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~E 1519 (1806)
....+|||||+++++++.. .....+||++..||.|||+++++++.... +++|||||.+ ++.||.+|
T Consensus 251 ~~~~~LRpYQ~eAl~~~~~-~gr~r~GIIvLPtGaGKTlvai~aa~~l~------------k~tLILvps~~Lv~QW~~e 317 (732)
T TIGR00603 251 KPTTQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVTAACTVK------------KSCLVLCTSAVSVEQWKQQ 317 (732)
T ss_pred ccCCCcCHHHHHHHHHHHh-cCCCCCcEEEeCCCCChHHHHHHHHHHhC------------CCEEEEeCcHHHHHHHHHH
Confidence 3468899999999988742 22235799999999999999998876421 5899999976 68999999
Q ss_pred HHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhh----------HhhhccccceEEEEcccccccChhh
Q 000237 1520 IEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKD----------ADYLGQLLWNYCILDEGHIIKNSKS 1589 (1806)
Q Consensus 1520 i~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~d----------i~~L~~i~w~~VILDEaH~IKN~~S 1589 (1806)
|.+|+..+...+..|.|..+++ ....++|+|+||+++.+. .+.+....|++||+||||++. ..
T Consensus 318 f~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp--A~ 390 (732)
T TIGR00603 318 FKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP--AA 390 (732)
T ss_pred HHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc--HH
Confidence 9999865566777788865432 123578999999999643 345666789999999999994 44
Q ss_pred HHHHHHHHhhhcceEEeccCCCCCChhhHHhhhhhh
Q 000237 1590 KITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFL 1625 (1806)
Q Consensus 1590 k~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL 1625 (1806)
...+.+..+.+.+||+|||||++++ +.+..+.|+
T Consensus 391 ~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~L 424 (732)
T TIGR00603 391 MFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFL 424 (732)
T ss_pred HHHHHHHhcCcCcEEEEeecCcccC--Cchhhhhhh
Confidence 4556777889999999999999876 334444443
No 24
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.55 E-value=5.6e-14 Score=174.66 Aligned_cols=207 Identities=23% Similarity=0.324 Sum_probs=147.3
Q ss_pred cccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHH
Q 000237 1440 TELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAF 1518 (1806)
Q Consensus 1440 ~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~ 1518 (1806)
.....+||+||+++++-+......+..|++.-.+|.|||+.++.++.... .++|||||.. |+.||.+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------------~~~Lvlv~~~~L~~Qw~~ 98 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------------RSTLVLVPTKELLDQWAE 98 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------------CCEEEEECcHHHHHHHHH
Confidence 45677899999999964443333378899999999999999999887532 3599999955 8899999
Q ss_pred HHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhh--HhhhccccceEEEEcccccccChhhHHHHHHH
Q 000237 1519 EIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKD--ADYLGQLLWNYCILDEGHIIKNSKSKITVAVK 1596 (1806)
Q Consensus 1519 Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~d--i~~L~~i~w~~VILDEaH~IKN~~Sk~skalk 1596 (1806)
.+.++++.+ -.+..|.|..... ....|+|+||+++.+. .+.+..-.|+++|+||+|++-.+. ..+...
T Consensus 99 ~~~~~~~~~-~~~g~~~~~~~~~-------~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~--~~~~~~ 168 (442)
T COG1061 99 ALKKFLLLN-DEIGIYGGGEKEL-------EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS--YRRILE 168 (442)
T ss_pred HHHHhcCCc-cccceecCceecc-------CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH--HHHHHH
Confidence 999997432 2344555554321 1147999999999885 455555589999999999985443 334445
Q ss_pred Hhhhcc-eEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhhccee
Q 000237 1597 QLKAAH-RLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFL 1675 (1806)
Q Consensus 1597 ~L~A~~-RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L~Pfm 1675 (1806)
.+.+.+ |++|||||...+......+++++ .|.+
T Consensus 169 ~~~~~~~~LGLTATp~R~D~~~~~~l~~~~----------------------------------------------g~~v 202 (442)
T COG1061 169 LLSAAYPRLGLTATPEREDGGRIGDLFDLI----------------------------------------------GPIV 202 (442)
T ss_pred hhhcccceeeeccCceeecCCchhHHHHhc----------------------------------------------CCeE
Confidence 556666 99999999866543333333333 2333
Q ss_pred eeeehhhhhc--CCCCcEEEEEEecCCHHHHHHHHHHHHhH
Q 000237 1676 LRRTKDEVLS--DLPEKIIQDRYCDLSAVQLKLYEKFSGSQ 1714 (1806)
Q Consensus 1676 LRRtKedVl~--dLPpKie~vv~ceLSp~Qr~lYe~~~~s~ 1714 (1806)
......+... .|.|.....+++.++..++..|.......
T Consensus 203 y~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~ 243 (442)
T COG1061 203 YEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARF 243 (442)
T ss_pred eecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhh
Confidence 3333333322 58889999999999999999999877654
No 25
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.53 E-value=9.4e-14 Score=149.85 Aligned_cols=152 Identities=25% Similarity=0.300 Sum_probs=106.4
Q ss_pred cccchHHHHHHHHHHHHhhc---CCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecc-ccHHHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRF---KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS-TLVGHWAFE 1519 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~---~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~-SLl~qW~~E 1519 (1806)
.+|||||.+++.-+...... +.++++...+|.|||..++.++..+. .+++|+||. +++.||.++
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~------------~~~l~~~p~~~l~~Q~~~~ 69 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA------------RKVLIVAPNISLLEQWYDE 69 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH------------CEEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc------------cceeEecCHHHHHHHHHHH
Confidence 47999999999877655443 47889999999999999998776644 279999995 799999999
Q ss_pred HHHhhccCCceEEEEe-------------cChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh-------------hccccc
Q 000237 1520 IEKFIDVSLMSTLQYV-------------GSAQDRIALREQFDKHNVIITSYDVVRKDADY-------------LGQLLW 1573 (1806)
Q Consensus 1520 i~kf~~~p~l~vliy~-------------Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~-------------L~~i~w 1573 (1806)
|..|.. ........ ................++++++|+.+...... .....+
T Consensus 70 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 70 FDDFGS--EKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHST--TSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHhhh--hhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 988763 22221110 00101111223446788999999999876532 233468
Q ss_pred eEEEEcccccccChhhHHHHHHHHhhhcceEEeccCCC
Q 000237 1574 NYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPI 1611 (1806)
Q Consensus 1574 ~~VILDEaH~IKN~~Sk~skalk~L~A~~RLlLTGTPI 1611 (1806)
+++|+||||++.+... ++.+....+.+++.|||||.
T Consensus 148 ~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 148 DLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp SEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred CEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 9999999999854433 66666688899999999996
No 26
>PRK13766 Hef nuclease; Provisional
Probab=99.50 E-value=3.9e-13 Score=177.98 Aligned_cols=168 Identities=22% Similarity=0.239 Sum_probs=121.2
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecc-ccHHHHHHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS-TLVGHWAFEIEK 1522 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~-SLl~qW~~Ei~k 1522 (1806)
.++|+||++.+.... ..++++++++|+|||++++.++...... ..+++|||||. .|+.||.+++.+
T Consensus 14 ~~~r~yQ~~~~~~~l-----~~n~lv~~ptG~GKT~~a~~~i~~~l~~--------~~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 14 IEARLYQQLLAATAL-----KKNTLVVLPTGLGKTAIALLVIAERLHK--------KGGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred CCccHHHHHHHHHHh-----cCCeEEEcCCCccHHHHHHHHHHHHHHh--------CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 478999999887652 2379999999999999998887765421 11689999996 799999999999
Q ss_pred hhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHh--hhccccceEEEEcccccccChhhHHHHHHHHh--
Q 000237 1523 FIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDAD--YLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-- 1598 (1806)
Q Consensus 1523 f~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~--~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L-- 1598 (1806)
+++.+..++..+.|...... ....+..++|+|+|++.+.++.. .+....|+++|+||||++.+..+..+.+-.-.
T Consensus 81 ~~~~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~ 159 (773)
T PRK13766 81 FLNIPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED 159 (773)
T ss_pred HhCCCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhc
Confidence 98655567888888654322 12345678999999999987652 23344699999999999987554443322222
Q ss_pred -hhcceEEeccCCCCCChhhHHhhhhhhC
Q 000237 1599 -KAAHRLILSGTPIQNNITDLWSLFDFLM 1626 (1806)
Q Consensus 1599 -~A~~RLlLTGTPIqNnl~ELwSLL~FL~ 1626 (1806)
+..++++|||||.++ ...+..++.-|.
T Consensus 160 ~~~~~il~lTaTP~~~-~~~i~~~~~~L~ 187 (773)
T PRK13766 160 AKNPLVLGLTASPGSD-EEKIKEVCENLG 187 (773)
T ss_pred CCCCEEEEEEcCCCCC-HHHHHHHHHhCC
Confidence 344589999999876 445555555443
No 27
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.43 E-value=5.3e-13 Score=168.62 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=106.6
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecc-ccHHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS-TLVGHWAFEIE 1521 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~-SLl~qW~~Ei~ 1521 (1806)
+.+||+||++++.-+. .+..|++...+|.|||+.++.++......+ ..++||+||. .|+.||.+++.
T Consensus 112 ~~~~r~~Q~~av~~~l----~~~~~il~apTGsGKT~i~~~l~~~~~~~~--------~~~vLilvpt~eL~~Q~~~~l~ 179 (501)
T PHA02558 112 KIEPHWYQYDAVYEGL----KNNRRLLNLPTSAGKSLIQYLLSRYYLENY--------EGKVLIIVPTTSLVTQMIDDFV 179 (501)
T ss_pred cCCCCHHHHHHHHHHH----hcCceEEEeCCCCCHHHHHHHHHHHHHhcC--------CCeEEEEECcHHHHHHHHHHHH
Confidence 3689999999996443 245689999999999998766544322211 1489999995 69999999999
Q ss_pred HhhccCCceE-EEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHh-h
Q 000237 1522 KFIDVSLMST-LQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-K 1599 (1806)
Q Consensus 1522 kf~~~p~l~v-liy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L-~ 1599 (1806)
+|...+...+ .++.|.... ...+|+|+||+.+.+....+. -.|+++|+||||++... .....+..+ +
T Consensus 180 ~~~~~~~~~~~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~~~~~--~~~~il~~~~~ 248 (501)
T PHA02558 180 DYRLFPREAMHKIYSGTAKD--------TDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDECHLFTGK--SLTSIITKLDN 248 (501)
T ss_pred HhccccccceeEEecCcccC--------CCCCEEEeeHHHHhhchhhhc-cccCEEEEEchhcccch--hHHHHHHhhhc
Confidence 9975443333 344444321 357899999999876543221 36899999999999653 345556667 6
Q ss_pred hcceEEeccCCCCC
Q 000237 1600 AAHRLILSGTPIQN 1613 (1806)
Q Consensus 1600 A~~RLlLTGTPIqN 1613 (1806)
+.++++|||||...
T Consensus 249 ~~~~lGLTATp~~~ 262 (501)
T PHA02558 249 CKFKFGLTGSLRDG 262 (501)
T ss_pred cceEEEEeccCCCc
Confidence 78899999999643
No 28
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.41 E-value=2.8e-12 Score=138.06 Aligned_cols=162 Identities=26% Similarity=0.250 Sum_probs=113.3
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIE 1521 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~ 1521 (1806)
..++++||.+++..+.... .++++..++|.|||..++.++........ ..++||++| ..+..+|..++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-------~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKRGK-------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhcccC-------CCcEEEEeCCHHHHHHHHHHHH
Confidence 3568999999998775221 67899999999999987777765443211 268999999 678899999999
Q ss_pred HhhccCC-ceEEEEecChhHHHHHHhhhcC-CcEEEeeHHHHHhhHhh--hccccceEEEEcccccccC-hhhHHHH-HH
Q 000237 1522 KFIDVSL-MSTLQYVGSAQDRIALREQFDK-HNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKN-SKSKITV-AV 1595 (1806)
Q Consensus 1522 kf~~~p~-l~vliy~Gs~~~R~~l~~~l~~-~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN-~~Sk~sk-al 1595 (1806)
+++.... .....+.+... .......... ++++++||+.+...... .....++++|+||+|.+.+ ....... .+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSK-REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred HHhccCCeEEEEEeCCcch-HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 9984333 34444555432 2222222233 39999999999887765 4455688999999999985 3333333 33
Q ss_pred HHh-hhcceEEeccCCCCCCh
Q 000237 1596 KQL-KAAHRLILSGTPIQNNI 1615 (1806)
Q Consensus 1596 k~L-~A~~RLlLTGTPIqNnl 1615 (1806)
..+ ...+++++||||..+.-
T Consensus 155 ~~~~~~~~~v~~saT~~~~~~ 175 (201)
T smart00487 155 KLLPKNVQLLLLSATPPEEIE 175 (201)
T ss_pred HhCCccceEEEEecCCchhHH
Confidence 334 47888999999974433
No 29
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.36 E-value=4.5e-12 Score=128.63 Aligned_cols=137 Identities=20% Similarity=0.228 Sum_probs=102.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHhhccCCceEEEEecChhHHHHH
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIAL 1544 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l 1544 (1806)
++++..++|.|||.+++.++...... ...++++|+||.. +..+|.+++.++... ...+..+.+........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 57899999999999999998876543 1227899999976 556667778887743 56777777766555544
Q ss_pred HhhhcCCcEEEeeHHHHHhhHhhh--ccccceEEEEcccccccChhhHHH---HHHHHhhhcceEEeccCC
Q 000237 1545 REQFDKHNVIITSYDVVRKDADYL--GQLLWNYCILDEGHIIKNSKSKIT---VAVKQLKAAHRLILSGTP 1610 (1806)
Q Consensus 1545 ~~~l~~~dVVITSYe~Lr~di~~L--~~i~w~~VILDEaH~IKN~~Sk~s---kalk~L~A~~RLlLTGTP 1610 (1806)
.......+++++||+.+.+..... ....|+++|+||+|.+.+...... .........+++++||||
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 455678899999999887665432 345799999999999988765554 233334677889999998
No 30
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.29 E-value=3.9e-12 Score=151.62 Aligned_cols=170 Identities=22% Similarity=0.397 Sum_probs=132.1
Q ss_pred CCCccCcccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-c
Q 000237 1434 DDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-L 1512 (1806)
Q Consensus 1434 ~~~~ip~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-L 1512 (1806)
++..+.-....++||||...++-| |.+-..+.||+.-..|.|||+..+..++... +.+||+|-.+ -
T Consensus 291 pdl~idLKPst~iRpYQEksL~KM-FGNgRARSGiIVLPCGAGKtLVGvTAa~tik------------K~clvLcts~VS 357 (776)
T KOG1123|consen 291 PDLDIDLKPSTQIRPYQEKSLSKM-FGNGRARSGIIVLPCGAGKTLVGVTAACTIK------------KSCLVLCTSAVS 357 (776)
T ss_pred CCCCcCcCcccccCchHHHHHHHH-hCCCcccCceEEEecCCCCceeeeeeeeeec------------ccEEEEecCccC
Confidence 344455556789999999999987 4555556799999999999999887765432 5799999977 5
Q ss_pred HHHHHHHHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHh----------hHhhhccccceEEEEcccc
Q 000237 1513 VGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRK----------DADYLGQLLWNYCILDEGH 1582 (1806)
Q Consensus 1513 l~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~----------di~~L~~i~w~~VILDEaH 1582 (1806)
+.||+..|..|.....-.+..|....+++.. ..++|+|+||.++.. ..+++....|+++|+||.|
T Consensus 358 VeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~-----~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVH 432 (776)
T KOG1123|consen 358 VEQWKQQFKQWSTIQDDQICRFTSDAKERFP-----SGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVH 432 (776)
T ss_pred HHHHHHHHHhhcccCccceEEeeccccccCC-----CCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhc
Confidence 6999999999986555667777777666533 567899999999942 3578889999999999999
Q ss_pred cccChhhHHHHHHHHhhhcceEEeccCCCCCChhhHHhhhhhh
Q 000237 1583 IIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFL 1625 (1806)
Q Consensus 1583 ~IKN~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL 1625 (1806)
.+ |.....+.+.-+.+..+++||+|-+..+ |=..=++||
T Consensus 433 vv--PA~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFL 471 (776)
T KOG1123|consen 433 VV--PAKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFL 471 (776)
T ss_pred cc--hHHHHHHHHHHHHHHhhccceeEEeecc--cccccccee
Confidence 98 7666666777778899999999998764 222234565
No 31
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.18 E-value=1.2e-10 Score=157.56 Aligned_cols=162 Identities=18% Similarity=0.068 Sum_probs=104.8
Q ss_pred ccccchHHHHHHHHHHHHh-hcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLK-RFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEI 1520 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~-~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei 1520 (1806)
...||+||.++|+.+.... ....+++++..+|.|||.++++++..+.... ..+++|+++| ..|+.||.++|
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~-------~~~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAK-------RFRRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcC-------ccCeEEEEecHHHHHHHHHHHH
Confidence 4579999999997654433 3345789999999999999999887665432 1268999999 55999999999
Q ss_pred HHhhccCCceEE-EEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh-------hccccceEEEEcccccccChh----
Q 000237 1521 EKFIDVSLMSTL-QYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY-------LGQLLWNYCILDEGHIIKNSK---- 1588 (1806)
Q Consensus 1521 ~kf~~~p~l~vl-iy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~-------L~~i~w~~VILDEaH~IKN~~---- 1588 (1806)
..+.......+. +|.... -+.. ..-....|+|+||+++.+.+.. +.--.|++||+||||+.-...
T Consensus 484 ~~~~~~~~~~~~~i~~i~~-L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~ 560 (1123)
T PRK11448 484 KDTKIEGDQTFASIYDIKG-LEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMS 560 (1123)
T ss_pred Hhcccccccchhhhhchhh-hhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccc
Confidence 998521111111 111110 0100 0123578999999998665321 223458999999999952110
Q ss_pred ------------hHHHHHHHHhhhcceEEeccCCCCCC
Q 000237 1589 ------------SKITVAVKQLKAAHRLILSGTPIQNN 1614 (1806)
Q Consensus 1589 ------------Sk~skalk~L~A~~RLlLTGTPIqNn 1614 (1806)
-..++.+...-...+++|||||..+.
T Consensus 561 ~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t 598 (1123)
T PRK11448 561 EGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALHT 598 (1123)
T ss_pred cchhccchhhhHHHHHHHHHhhcCccEEEEecCCccch
Confidence 12233332222247899999999654
No 32
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.06 E-value=2.5e-09 Score=118.88 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=108.0
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
.+++||.++++-+.. +.+.+++..+|.|||+..+..+......... ....+++|||| ..++.||.+.+.+|
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~----~~~~~viii~p~~~L~~q~~~~~~~~ 92 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPK----KDGPQALILAPTRELALQIAEVARKL 92 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcc----cCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 589999999976643 6678999999999998854444433332210 11257999999 55889999999999
Q ss_pred hccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh--hccccceEEEEcccccccChh-hHHHH-HHHHhh
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKNSK-SKITV-AVKQLK 1599 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN~~-Sk~sk-alk~L~ 1599 (1806)
......++..+.|.............+.+|+|+|.+.+...... +.-..++++|+||+|.+.+.. ..... ....+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~ 172 (203)
T cd00268 93 GKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP 172 (203)
T ss_pred hccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCC
Confidence 86567788888886654433222224789999998877543321 122347899999999986443 22222 233343
Q ss_pred -hcceEEeccCCC
Q 000237 1600 -AAHRLILSGTPI 1611 (1806)
Q Consensus 1600 -A~~RLlLTGTPI 1611 (1806)
....+++|+||-
T Consensus 173 ~~~~~~~~SAT~~ 185 (203)
T cd00268 173 KDRQTLLFSATMP 185 (203)
T ss_pred cccEEEEEeccCC
Confidence 455788999997
No 33
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.05 E-value=1.7e-09 Score=115.93 Aligned_cols=158 Identities=19% Similarity=0.249 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhhcc
Q 000237 1448 RYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFIDV 1526 (1806)
Q Consensus 1448 pYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~~~ 1526 (1806)
|+|.+++.-+. .+.+-++...+|.|||...+..+....... +...++|+|| ..++.+=.+++.+++..
T Consensus 2 ~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 2 PLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeecccccccccccccccccc
Confidence 79999997664 345679999999999998876665433321 1148999999 55889999999999976
Q ss_pred CCceEEEEecChhHHHHHHhhh-cCCcEEEeeHHHHHhhHhh--hccccceEEEEcccccccCh--hhHHHHHHHHh---
Q 000237 1527 SLMSTLQYVGSAQDRIALREQF-DKHNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKNS--KSKITVAVKQL--- 1598 (1806)
Q Consensus 1527 p~l~vliy~Gs~~~R~~l~~~l-~~~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN~--~Sk~skalk~L--- 1598 (1806)
...++..+.|...........+ .+.+|+|+|++.+...... ..-...+++|+||+|.+... .......+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~ 150 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF 150 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT
T ss_pred cccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCC
Confidence 6678888877664332222333 4689999999999876654 11233799999999998652 22233333444
Q ss_pred hhcceEEeccCCCCCChhh
Q 000237 1599 KAAHRLILSGTPIQNNITD 1617 (1806)
Q Consensus 1599 ~A~~RLlLTGTPIqNnl~E 1617 (1806)
...+.+++||||- .++.+
T Consensus 151 ~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 151 KNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp TTSEEEEEESSST-HHHHH
T ss_pred CCCcEEEEeeCCC-hhHhh
Confidence 2356889999998 55544
No 34
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.05 E-value=1.1e-09 Score=142.91 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=106.4
Q ss_pred cccccchHHHHHHHHHHHHhhc------CCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRF------KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVG 1514 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~------~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~ 1514 (1806)
.+.-.|+||..+|+-+...... +.+|++.+.+|.|||++++.++..+.... ...++|||+| ..|..
T Consensus 235 ~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~-------~~~~vl~lvdR~~L~~ 307 (667)
T TIGR00348 235 TKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL-------KNPKVFFVVDRRELDY 307 (667)
T ss_pred eeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc-------CCCeEEEEECcHHHHH
Confidence 4566899999999887655433 35799999999999999988887655321 1267999999 55999
Q ss_pred HHHHHHHHhhccCCceEEEEecChhHHHHHHhhh--cCCcEEEeeHHHHHhhHh-hhccc---c-ceEEEEcccccccCh
Q 000237 1515 HWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQF--DKHNVIITSYDVVRKDAD-YLGQL---L-WNYCILDEGHIIKNS 1587 (1806)
Q Consensus 1515 qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l--~~~dVVITSYe~Lr~di~-~L~~i---~-w~~VILDEaH~IKN~ 1587 (1806)
||.++|.++.. .. + .-.++. ..+...+ ...+|+|||++++.+... .+... . ..+||+||||+...
T Consensus 308 Q~~~~f~~~~~--~~-~-~~~~s~---~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~- 379 (667)
T TIGR00348 308 QLMKEFQSLQK--DC-A-ERIESI---AELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY- 379 (667)
T ss_pred HHHHHHHhhCC--CC-C-cccCCH---HHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc-
Confidence 99999999973 11 1 111222 2222222 246899999999986332 22222 1 23899999998642
Q ss_pred hhHHHHHHH-HhhhcceEEeccCCCCC
Q 000237 1588 KSKITVAVK-QLKAAHRLILSGTPIQN 1613 (1806)
Q Consensus 1588 ~Sk~skalk-~L~A~~RLlLTGTPIqN 1613 (1806)
....+.++ .+...++++|||||+..
T Consensus 380 -~~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 380 -GELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred -hHHHHHHHhhCCCCcEEEEeCCCccc
Confidence 23344453 45677899999999863
No 35
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.00 E-value=1.1e-08 Score=124.75 Aligned_cols=209 Identities=17% Similarity=0.151 Sum_probs=143.3
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIE 1521 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~ 1521 (1806)
..+.|.||..-+.-.. ..+.+++-.+|||||+.++.+++......+ +++|+++| +-|+.|-..-+.
T Consensus 13 ~ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--------~kvlfLAPTKPLV~Qh~~~~~ 79 (542)
T COG1111 13 TIEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWFG--------GKVLFLAPTKPLVLQHAEFCR 79 (542)
T ss_pred cccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhcC--------CeEEEecCCchHHHHHHHHHH
Confidence 3477999987764332 237899999999999999998886554322 47999999 669999999999
Q ss_pred HhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHh--hhccccceEEEEcccccccChhhHHH--HHHHH
Q 000237 1522 KFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDAD--YLGQLLWNYCILDEGHIIKNSKSKIT--VAVKQ 1597 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~--~L~~i~w~~VILDEaH~IKN~~Sk~s--kalk~ 1597 (1806)
++++.|.-.+..+.|.-....+ ...|.+.+|+++|-+++.||+. .+.--.+.++|+||||+.-...+-.+ +....
T Consensus 80 ~v~~ip~~~i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~ 158 (542)
T COG1111 80 KVTGIPEDEIAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR 158 (542)
T ss_pred HHhCCChhheeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH
Confidence 9998888889999996543222 2356788999999999999874 34445689999999999754333222 22222
Q ss_pred hhhc-ceEEeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHhccchhhccccCCChhhHHHHHHHHHHHHHhhcceee
Q 000237 1598 LKAA-HRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLL 1676 (1806)
Q Consensus 1598 L~A~-~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~~~r~~~~s~ke~e~g~~ale~L~k~L~PfmL 1676 (1806)
-..+ +.++|||||-. +.+.+...++=| + +....+
T Consensus 159 ~~k~~~ilgLTASPGs-~~ekI~eV~~nL------------------------------------------g--Ie~vev 193 (542)
T COG1111 159 SAKNPLILGLTASPGS-DLEKIQEVVENL------------------------------------------G--IEKVEV 193 (542)
T ss_pred hccCceEEEEecCCCC-CHHHHHHHHHhC------------------------------------------C--cceEEE
Confidence 2333 57889999942 222222222211 1 122223
Q ss_pred eeehh--hhhcCCCCcEEEEEEecCCHHHHHHHHHHH
Q 000237 1677 RRTKD--EVLSDLPEKIIQDRYCDLSAVQLKLYEKFS 1711 (1806)
Q Consensus 1677 RRtKe--dVl~dLPpKie~vv~ceLSp~Qr~lYe~~~ 1711 (1806)
||-+ ||...+-.+..+++.++|+++=.++-+.+.
T Consensus 194 -rTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~ 229 (542)
T COG1111 194 -RTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLR 229 (542)
T ss_pred -ecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHH
Confidence 3332 566677788889999999988766655553
No 36
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.91 E-value=1.4e-08 Score=132.23 Aligned_cols=158 Identities=18% Similarity=0.246 Sum_probs=110.6
Q ss_pred cccchHHHHHHHHHHHHhhc--CCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRF--KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEI 1520 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~--~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei 1520 (1806)
.+|.++|++++..+..-... ..+.++.-++|.|||+.++..+...... ...++|++|.. |..||.+++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---------g~qvlilaPT~~LA~Q~~~~~ 304 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---------GYQVALMAPTEILAEQHYNSL 304 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---------CCcEEEECCHHHHHHHHHHHH
Confidence 47999999999887654322 2357999999999999876544433321 15799999954 779999999
Q ss_pred HHhhccCCceEEEEecChh--HHHHHHhhh--cCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHH
Q 000237 1521 EKFIDVSLMSTLQYVGSAQ--DRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVK 1596 (1806)
Q Consensus 1521 ~kf~~~p~l~vliy~Gs~~--~R~~l~~~l--~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk 1596 (1806)
.++++.-.+++..++|+.. ++......+ +..+|+|.|+..+..... -.+..++|+||+|++.- ........
T Consensus 305 ~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~---~~~l~lvVIDEaH~fg~--~qr~~l~~ 379 (630)
T TIGR00643 305 RNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE---FKRLALVIIDEQHRFGV--EQRKKLRE 379 (630)
T ss_pred HHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccc---ccccceEEEechhhccH--HHHHHHHH
Confidence 9998654688888888653 333333333 357999999998875432 23568999999999732 22222222
Q ss_pred Hhh---hcceEEeccCCCCCCh
Q 000237 1597 QLK---AAHRLILSGTPIQNNI 1615 (1806)
Q Consensus 1597 ~L~---A~~RLlLTGTPIqNnl 1615 (1806)
... ..+.+++||||+...+
T Consensus 380 ~~~~~~~~~~l~~SATp~prtl 401 (630)
T TIGR00643 380 KGQGGFTPHVLVMSATPIPRTL 401 (630)
T ss_pred hcccCCCCCEEEEeCCCCcHHH
Confidence 223 5678999999987654
No 37
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.88 E-value=5.7e-09 Score=132.81 Aligned_cols=160 Identities=17% Similarity=0.189 Sum_probs=118.8
Q ss_pred CCCccCcccccccchHHHHHHHHHHHHhhcCC-ceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cc
Q 000237 1434 DDYKLGTELKVTLRRYQQEGINWLAFLKRFKL-HGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-ST 1511 (1806)
Q Consensus 1434 ~~~~ip~~lk~~LRpYQ~eGV~wL~~l~~~~~-gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~S 1511 (1806)
..+..|......+|+||+.+|+........+. ..+|...+|.|||.+||+++..++..+. .+++|.++- .+
T Consensus 154 ~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~-------~KRVLFLaDR~~ 226 (875)
T COG4096 154 QLAYIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGW-------VKRVLFLADRNA 226 (875)
T ss_pred ccccCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcch-------hheeeEEechHH
Confidence 45667777788999999999998877665554 4799999999999999999998886543 379999998 77
Q ss_pred cHHHHHHHHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh-------hccccceEEEEcccccc
Q 000237 1512 LVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY-------LGQLLWNYCILDEGHII 1584 (1806)
Q Consensus 1512 Ll~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~-------L~~i~w~~VILDEaH~I 1584 (1806)
|+.|=..++..|. |.-....+..... .-..++|++.||+++...+.. +..-.|++||+||||+
T Consensus 227 Lv~QA~~af~~~~--P~~~~~n~i~~~~-------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR- 296 (875)
T COG4096 227 LVDQAYGAFEDFL--PFGTKMNKIEDKK-------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR- 296 (875)
T ss_pred HHHHHHHHHHHhC--CCccceeeeeccc-------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh-
Confidence 9999999999999 4433333222111 112578999999999765432 2334599999999997
Q ss_pred cChhhHHHHHHHHhhhcceEEeccCCCC
Q 000237 1585 KNSKSKITVAVKQLKAAHRLILSGTPIQ 1612 (1806)
Q Consensus 1585 KN~~Sk~skalk~L~A~~RLlLTGTPIq 1612 (1806)
..-+.++.+...-...+++||+||-.
T Consensus 297 --gi~~~~~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 297 --GIYSEWSSILDYFDAATQGLTATPKE 322 (875)
T ss_pred --hHHhhhHHHHHHHHHHHHhhccCccc
Confidence 22333345555566677888999987
No 38
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.78 E-value=3.3e-08 Score=126.28 Aligned_cols=166 Identities=19% Similarity=0.230 Sum_probs=117.9
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIE 1521 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~ 1521 (1806)
...||+||.+-+.-.+ +.+.|+|-.+|+|||..|..++......+.. +++++.+|.. |+.|=...+.
T Consensus 60 ~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-------~KiVF~aP~~pLv~QQ~a~~~ 127 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-------GKVVFLAPTRPLVNQQIACFS 127 (746)
T ss_pred cccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-------ceEEEeeCCchHHHHHHHHHh
Confidence 4589999999886432 5678999999999999998887655443322 7899999965 7777778999
Q ss_pred HhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhcccc---ceEEEEcccccccC--hhhHHHHHHH
Q 000237 1522 KFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLL---WNYCILDEGHIIKN--SKSKITVAVK 1596 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~---w~~VILDEaH~IKN--~~Sk~skalk 1596 (1806)
.++. | ..+....|+...+......+...+|++.|-+++.+++..-..-. |-++|+||||+-.. +-+...+.+.
T Consensus 128 ~~~~-~-~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l 205 (746)
T KOG0354|consen 128 IYLI-P-YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYL 205 (746)
T ss_pred hccC-c-ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHH
Confidence 9874 2 55556666644444444666788999999999999886554444 89999999998632 3333333333
Q ss_pred Hhh--hcceEEeccCCCCCChhhHHhhhh
Q 000237 1597 QLK--AAHRLILSGTPIQNNITDLWSLFD 1623 (1806)
Q Consensus 1597 ~L~--A~~RLlLTGTPIqNnl~ELwSLL~ 1623 (1806)
.++ ....|+|||||- ++.....+.++
T Consensus 206 ~~k~~~~qILgLTASpG-~~~~~v~~~I~ 233 (746)
T KOG0354|consen 206 DLKNQGNQILGLTASPG-SKLEQVQNVID 233 (746)
T ss_pred HhhhccccEEEEecCCC-ccHHHHHHHHH
Confidence 332 335688999998 55555544443
No 39
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.77 E-value=5e-08 Score=127.98 Aligned_cols=157 Identities=18% Similarity=0.287 Sum_probs=111.3
Q ss_pred ccccchHHHHHHHHHHHHhhc--CCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRF--KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFE 1519 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~--~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~E 1519 (1806)
..+|+++|+.++.-+..-... ....++.-++|.|||+.++..+...... ...+||++|.. |..|+.+.
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---------g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---------GYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEeccHHHHHHHHHH
Confidence 447999999999877543322 2356999999999999887665443321 14799999955 77999999
Q ss_pred HHHhhccCCceEEEEecChh--HHHHHHhhh--cCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHH
Q 000237 1520 IEKFIDVSLMSTLQYVGSAQ--DRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAV 1595 (1806)
Q Consensus 1520 i~kf~~~p~l~vliy~Gs~~--~R~~l~~~l--~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skal 1595 (1806)
+++++....+++..++|... ++......+ +..+|+|+|+..+...+. + .+.+++|+||+|++. ......+
T Consensus 330 l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~-~--~~l~lvVIDE~Hrfg---~~qr~~l 403 (681)
T PRK10917 330 LKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVE-F--HNLGLVIIDEQHRFG---VEQRLAL 403 (681)
T ss_pred HHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccch-h--cccceEEEechhhhh---HHHHHHH
Confidence 99998655688888888764 344444433 368999999988865432 2 346899999999973 2223333
Q ss_pred HHh-hhcceEEeccCCCCCC
Q 000237 1596 KQL-KAAHRLILSGTPIQNN 1614 (1806)
Q Consensus 1596 k~L-~A~~RLlLTGTPIqNn 1614 (1806)
... ...+.+++||||+...
T Consensus 404 ~~~~~~~~iL~~SATp~prt 423 (681)
T PRK10917 404 REKGENPHVLVMTATPIPRT 423 (681)
T ss_pred HhcCCCCCEEEEeCCCCHHH
Confidence 333 3467899999998654
No 40
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.76 E-value=8.1e-08 Score=119.66 Aligned_cols=166 Identities=13% Similarity=0.077 Sum_probs=108.1
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf 1523 (1806)
+++++|.+++..+. .+...++.-.+|.|||+..+..+......... .......+||++|.. |..||.+.+..|
T Consensus 23 ~p~~iQ~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~--~~~~~~~~lil~Pt~eLa~Q~~~~~~~l 96 (434)
T PRK11192 23 RPTAIQAEAIPPAL----DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR--RKSGPPRILILTPTRELAMQVADQAREL 96 (434)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCceEEEECCcHHHHHHHHHHHHHH
Confidence 46789999997654 34568999999999998865444332221111 111125789999954 889999999998
Q ss_pred hccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHh--hhccccceEEEEcccccccChhhHHHHHHHHh---
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDAD--YLGQLLWNYCILDEGHIIKNSKSKITVAVKQL--- 1598 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~--~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L--- 1598 (1806)
.....+++..+.|...............+|+|+|.+.+...+. .+....++++|+||+|++-... ....+..+
T Consensus 97 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~--~~~~~~~i~~~ 174 (434)
T PRK11192 97 AKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMG--FAQDIETIAAE 174 (434)
T ss_pred HccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCC--cHHHHHHHHHh
Confidence 8666788888887654332222223467899999998875442 1223446889999999885432 22223333
Q ss_pred -h-hcceEEeccCCCCCChhhH
Q 000237 1599 -K-AAHRLILSGTPIQNNITDL 1618 (1806)
Q Consensus 1599 -~-A~~RLlLTGTPIqNnl~EL 1618 (1806)
. ....+++|||+-...+.++
T Consensus 175 ~~~~~q~~~~SAT~~~~~~~~~ 196 (434)
T PRK11192 175 TRWRKQTLLFSATLEGDAVQDF 196 (434)
T ss_pred CccccEEEEEEeecCHHHHHHH
Confidence 2 2345889999865444443
No 41
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.76 E-value=1e-07 Score=119.67 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=107.0
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
.+.|+|.+++..+. .+...|+.-.+|.|||+..+..+..................+||||| ..|..||.+++.+|
T Consensus 23 ~pt~iQ~~ai~~il----~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAVL----EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 57899999997654 35568999999999998865544433322111100011135899999 55889999999999
Q ss_pred hccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHh--hhccccceEEEEcccccccChh--hHHHHHHHHhh
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDAD--YLGQLLWNYCILDEGHIIKNSK--SKITVAVKQLK 1599 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~--~L~~i~w~~VILDEaH~IKN~~--Sk~skalk~L~ 1599 (1806)
.....+++..+.|..............++|+|+|.+.+..... .+.-...+++|+||+|++-... ..+...+..+.
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~ 178 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLP 178 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCC
Confidence 8666677777776654433333334578999999998855432 1222347899999999985432 12223334443
Q ss_pred hc-ceEEeccCCC
Q 000237 1600 AA-HRLILSGTPI 1611 (1806)
Q Consensus 1600 A~-~RLlLTGTPI 1611 (1806)
.. ..+++|+|+-
T Consensus 179 ~~~q~l~~SAT~~ 191 (456)
T PRK10590 179 AKRQNLLFSATFS 191 (456)
T ss_pred ccCeEEEEeCCCc
Confidence 33 4689999974
No 42
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.71 E-value=1.3e-07 Score=126.70 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=109.9
Q ss_pred cccccchHHHHHHHHHHHHhhcC--CceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFK--LHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAF 1518 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~--~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~ 1518 (1806)
+..++.|+|+.++..+..-...+ ...+++-++|.|||..++..+......+ ..++|+||.. |..|+.+
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---------~qvlvLvPT~~LA~Q~~~ 518 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---------KQVAVLVPTTLLAQQHFE 518 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---------CeEEEEeCcHHHHHHHHH
Confidence 34568999999998775433322 3569999999999998765543322211 5799999965 7799999
Q ss_pred HHHHhhccCCceEEEEecCh--hHHHHHHhhh--cCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHH
Q 000237 1519 EIEKFIDVSLMSTLQYVGSA--QDRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVA 1594 (1806)
Q Consensus 1519 Ei~kf~~~p~l~vliy~Gs~--~~R~~l~~~l--~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~ska 1594 (1806)
.|.+++..-.+++..+.|.. .++......+ +..+|||+|+..+.+++. -.+..++|+||+|++.. .....
T Consensus 519 ~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~---f~~L~llVIDEahrfgv---~~~~~ 592 (926)
T TIGR00580 519 TFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVK---FKDLGLLIIDEEQRFGV---KQKEK 592 (926)
T ss_pred HHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCC---cccCCEEEeecccccch---hHHHH
Confidence 99998854456666666643 3444444443 357999999987754432 13468999999999732 23344
Q ss_pred HHHhh-hcceEEeccCCCCCChh
Q 000237 1595 VKQLK-AAHRLILSGTPIQNNIT 1616 (1806)
Q Consensus 1595 lk~L~-A~~RLlLTGTPIqNnl~ 1616 (1806)
++.+. ..+.+++||||+...+.
T Consensus 593 L~~~~~~~~vL~~SATpiprtl~ 615 (926)
T TIGR00580 593 LKELRTSVDVLTLSATPIPRTLH 615 (926)
T ss_pred HHhcCCCCCEEEEecCCCHHHHH
Confidence 55554 45789999999876543
No 43
>PTZ00424 helicase 45; Provisional
Probab=98.69 E-value=1.5e-07 Score=115.58 Aligned_cols=157 Identities=20% Similarity=0.099 Sum_probs=104.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
.++|+|..++..+. .+...++..++|.|||+..+..+....... .....+||++| ..|..|+.+.+..+
T Consensus 50 ~~~~~Q~~ai~~i~----~~~d~ii~apTGsGKT~~~~l~~l~~~~~~------~~~~~~lil~Pt~~L~~Q~~~~~~~~ 119 (401)
T PTZ00424 50 KPSAIQQRGIKPIL----DGYDTIGQAQSGTGKTATFVIAALQLIDYD------LNACQALILAPTRELAQQIQKVVLAL 119 (401)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhcCC------CCCceEEEECCCHHHHHHHHHHHHHH
Confidence 58999999998763 455679999999999987644433222110 11257999999 55888999988888
Q ss_pred hccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHh--hhccccceEEEEcccccccC--hhhHHHHHHHHhh
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDAD--YLGQLLWNYCILDEGHIIKN--SKSKITVAVKQLK 1599 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~--~L~~i~w~~VILDEaH~IKN--~~Sk~skalk~L~ 1599 (1806)
............|....+..........+|+|+|.+.+..... .+.--.++++|+||+|++.. ........++.+.
T Consensus 120 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~ 199 (401)
T PTZ00424 120 GDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP 199 (401)
T ss_pred hhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCC
Confidence 7555566666666654443333333456999999988764432 12234578999999998754 2234445555554
Q ss_pred h-cceEEeccCCC
Q 000237 1600 A-AHRLILSGTPI 1611 (1806)
Q Consensus 1600 A-~~RLlLTGTPI 1611 (1806)
. ...+++|+|+-
T Consensus 200 ~~~~~i~~SAT~~ 212 (401)
T PTZ00424 200 PDVQVALFSATMP 212 (401)
T ss_pred CCcEEEEEEecCC
Confidence 3 34688999974
No 44
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.68 E-value=1.7e-07 Score=127.97 Aligned_cols=159 Identities=17% Similarity=0.202 Sum_probs=107.5
Q ss_pred cccccchHHHHHHHHHHHHhhc--CCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRF--KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAF 1518 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~--~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~ 1518 (1806)
+..++.+.|++++.-+..-... +...+++.++|.|||.+++-.+...... ...+||+||.. |..|..+
T Consensus 597 ~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---------g~qvlvLvPT~eLA~Q~~~ 667 (1147)
T PRK10689 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---------HKQVAVLVPTTLLAQQHYD 667 (1147)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHH
Confidence 4457899999999765443222 2456999999999999876333222111 15799999966 6689999
Q ss_pred HHHHhhccCCceEEEEecC--hhHHHHHHhhh--cCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHH
Q 000237 1519 EIEKFIDVSLMSTLQYVGS--AQDRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVA 1594 (1806)
Q Consensus 1519 Ei~kf~~~p~l~vliy~Gs--~~~R~~l~~~l--~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~ska 1594 (1806)
.|.+++..-.+++..+.|. ..++......+ +..+|+|+|++.++.+.. -.+.+++|+||+|++.. .....
T Consensus 668 ~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~---~~~L~lLVIDEahrfG~---~~~e~ 741 (1147)
T PRK10689 668 NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVK---WKDLGLLIVDEEHRFGV---RHKER 741 (1147)
T ss_pred HHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCC---HhhCCEEEEechhhcch---hHHHH
Confidence 9998774334566556553 33443333333 457999999988865432 23578999999999832 23344
Q ss_pred HHHhh-hcceEEeccCCCCCCh
Q 000237 1595 VKQLK-AAHRLILSGTPIQNNI 1615 (1806)
Q Consensus 1595 lk~L~-A~~RLlLTGTPIqNnl 1615 (1806)
++.+. ....+++||||++...
T Consensus 742 lk~l~~~~qvLl~SATpiprtl 763 (1147)
T PRK10689 742 IKAMRADVDILTLTATPIPRTL 763 (1147)
T ss_pred HHhcCCCCcEEEEcCCCCHHHH
Confidence 55554 4568999999998654
No 45
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.67 E-value=2.2e-07 Score=116.69 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=104.9
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
++.|+|.+++..+. .+...|++-++|.|||+..+..+....... .....+||+|| ..|..||.++++++
T Consensus 26 ~~t~iQ~~ai~~~l----~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~lil~PtreLa~Q~~~~~~~~ 95 (460)
T PRK11776 26 EMTPIQAQSLPAIL----AGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQALVLCPTRELADQVAKEIRRL 95 (460)
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 47899999998764 456789999999999976544333322111 11135899999 45889999999988
Q ss_pred hcc-CCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh--hccccceEEEEcccccccChh--hHHHHHHHHh
Q 000237 1524 IDV-SLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKNSK--SKITVAVKQL 1598 (1806)
Q Consensus 1524 ~~~-p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN~~--Sk~skalk~L 1598 (1806)
... +.+++..+.|...............+|+|+|++.+...... +.-..++++|+||+|.+-+.. ......+..+
T Consensus 96 ~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~ 175 (460)
T PRK11776 96 ARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQA 175 (460)
T ss_pred HhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhC
Confidence 632 36778777776544433333335779999999988654432 222357899999999875432 2233334444
Q ss_pred hh-cceEEeccCCC
Q 000237 1599 KA-AHRLILSGTPI 1611 (1806)
Q Consensus 1599 ~A-~~RLlLTGTPI 1611 (1806)
.. ...+++|||+-
T Consensus 176 ~~~~q~ll~SAT~~ 189 (460)
T PRK11776 176 PARRQTLLFSATYP 189 (460)
T ss_pred CcccEEEEEEecCc
Confidence 33 34688999984
No 46
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=1.8e-07 Score=118.05 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=108.5
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEK 1522 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~k 1522 (1806)
..+||+|++++.-+. .+...++...+|.|||+..+.-+. .. .+.+|||+| ..|+.+|...+..
T Consensus 10 ~~~r~~Q~~ai~~~l----~g~dvlv~apTGsGKTl~y~lp~l--~~----------~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 10 SSFRPVQLEVINAVL----LGRDCFVVMPTGGGKSLCYQLPAL--CS----------DGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCCcHhHHHHHHHH--Hc----------CCcEEEEecHHHHHHHHHHHHHH
Confidence 368999999998654 345789999999999975432221 11 157899999 5688999999887
Q ss_pred hhccCCceEEEEecChhH--HHHHHhh--hcCCcEEEeeHHHHHhhH---hhh-ccccceEEEEcccccccChh---hHH
Q 000237 1523 FIDVSLMSTLQYVGSAQD--RIALREQ--FDKHNVIITSYDVVRKDA---DYL-GQLLWNYCILDEGHIIKNSK---SKI 1591 (1806)
Q Consensus 1523 f~~~p~l~vliy~Gs~~~--R~~l~~~--l~~~dVVITSYe~Lr~di---~~L-~~i~w~~VILDEaH~IKN~~---Sk~ 1591 (1806)
+. +....+.+.... +..+... .+.++++++|.+.+.... ..+ ......++|+||+|.+..-. ...
T Consensus 74 ~g----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 74 SG----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred cC----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHH
Confidence 53 344445544322 2222222 346799999999986543 233 34568999999999985422 122
Q ss_pred HHHHH----HhhhcceEEeccCCCCCChhhHHhhhhhhCCC
Q 000237 1592 TVAVK----QLKAAHRLILSGTPIQNNITDLWSLFDFLMPG 1628 (1806)
Q Consensus 1592 skalk----~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg 1628 (1806)
+..+. .+.....++|||||-.....++...+.+-.|.
T Consensus 150 ~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~ 190 (470)
T TIGR00614 150 YKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQ 190 (470)
T ss_pred HHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCc
Confidence 22222 23445689999999887777777766654443
No 47
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.67 E-value=4.7e-07 Score=106.49 Aligned_cols=239 Identities=20% Similarity=0.194 Sum_probs=145.1
Q ss_pred ccCcc--cccccchHHHHHHHHHHHHhh------cCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEe
Q 000237 1437 KLGTE--LKVTLRRYQQEGINWLAFLKR------FKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIIC 1508 (1806)
Q Consensus 1437 ~ip~~--lk~~LRpYQ~eGV~wL~~l~~------~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVc 1508 (1806)
.+|.. -...|=.-|.|+|-|...... ++.|-+|+|.+|.||-.|.-++|...+..++. +++-|-+
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-------r~vwvS~ 99 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK-------RAVWVSV 99 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-------ceEEEEC
Confidence 34443 356788899999988866554 23344999999999999999999876654321 3455555
Q ss_pred ccccHHHHHHHHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHh-------hhcc------ccc-e
Q 000237 1509 PSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDAD-------YLGQ------LLW-N 1574 (1806)
Q Consensus 1509 P~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~-------~L~~------i~w-~ 1574 (1806)
...|..-=.+.+..... ..+.+.....-.... . .--..+|+++||.+++.... .+.+ ..| .
T Consensus 100 s~dL~~Da~RDl~DIG~-~~i~v~~l~~~~~~~--~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdg 174 (303)
T PF13872_consen 100 SNDLKYDAERDLRDIGA-DNIPVHPLNKFKYGD--I--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDG 174 (303)
T ss_pred ChhhhhHHHHHHHHhCC-CcccceechhhccCc--C--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCc
Confidence 57788776666766542 333333322211110 0 01256899999999976521 1222 123 4
Q ss_pred EEEEcccccccChhh------HHHHHHHHhh----hcceEEeccCCCCCChhhH--HhhhhhhCCC-CCCchhHHHHHhc
Q 000237 1575 YCILDEGHIIKNSKS------KITVAVKQLK----AAHRLILSGTPIQNNITDL--WSLFDFLMPG-FLGTERQFQATYG 1641 (1806)
Q Consensus 1575 ~VILDEaH~IKN~~S------k~skalk~L~----A~~RLlLTGTPIqNnl~EL--wSLL~FL~Pg-~Lgt~~~F~~~f~ 1641 (1806)
++|+||||+.||..+ +...++..|+ .-+.+..|+|...+ +.++ +.=+.+-.++ .|.+..+|.+...
T Consensus 175 vivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RLGLWG~gtpf~~~~~f~~a~~ 253 (303)
T PF13872_consen 175 VIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMAYMSRLGLWGPGTPFPDFDDFLEAME 253 (303)
T ss_pred eEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-CceeeeeeeccccCCCCCCCCHHHHHHHHH
Confidence 799999999999654 6667776663 23567799999843 2222 1111111222 3455566655443
Q ss_pred cchhhccccCCChhhHHHHHHHHHHHHHhh--cceeeeeehhhhhcCCCCcEEEEEEecCCHHHHHHHHH
Q 000237 1642 KPLVAARDSKCSAKDAEAGVLAMEALHKQV--MPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEK 1709 (1806)
Q Consensus 1642 kPi~~~r~~~~s~ke~e~g~~ale~L~k~L--~PfmLRRtKedVl~dLPpKie~vv~ceLSp~Qr~lYe~ 1709 (1806)
+ + |..++|-+-.-+ ...+++|... +-.-...++.++||+.|.++|+.
T Consensus 254 ~----g------------Gv~amE~vA~dlKa~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 254 K----G------------GVGAMEMVAMDLKARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred h----c------------CchHHHHHHHHHHhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 2 1 222344443333 2455666553 55667889999999999999985
No 48
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.64 E-value=3.4e-07 Score=116.89 Aligned_cols=164 Identities=15% Similarity=0.041 Sum_probs=105.6
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHH-hHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVAS-DIAERRASNSIEEIHPSLIICP-STLVGHWAFEIE 1521 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~-l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~ 1521 (1806)
..++|+|.+++..+. .+...|+...+|.|||+..+.-+.. ....+...........+|||+| ..|..|+.++++
T Consensus 142 ~~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 467899999997664 4567899999999999876544332 2211111000112257899999 458899999999
Q ss_pred HhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh--hccccceEEEEcccccccCh--hhHHHHHHHH
Q 000237 1522 KFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKNS--KSKITVAVKQ 1597 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN~--~Sk~skalk~ 1597 (1806)
.+.....+++..+.|...............+|+|+|.+.+...... +.-....++|+||+|++-.. .....+.+..
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~ 297 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQA 297 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHh
Confidence 8875444555555554433323333335679999999887544321 22234679999999998542 2233344455
Q ss_pred hhhcceEEeccCCC
Q 000237 1598 LKAAHRLILSGTPI 1611 (1806)
Q Consensus 1598 L~A~~RLlLTGTPI 1611 (1806)
+.....+++|||.-
T Consensus 298 l~~~q~l~~SATl~ 311 (518)
T PLN00206 298 LSQPQVLLFSATVS 311 (518)
T ss_pred CCCCcEEEEEeeCC
Confidence 55667899999974
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=98.60 E-value=4.5e-07 Score=119.17 Aligned_cols=156 Identities=21% Similarity=0.150 Sum_probs=103.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
+|+|+|.+++..+ ..+.+.+++-++|.|||+++...+......+ +++++|+| .+|..++.+++.++
T Consensus 22 ~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~~---------~k~v~i~P~raLa~q~~~~~~~l 88 (674)
T PRK01172 22 ELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLAG---------LKSIYIVPLRSLAMEKYEELSRL 88 (674)
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHhC---------CcEEEEechHHHHHHHHHHHHHH
Confidence 5899999999865 3456789999999999998765554333211 57899999 66889999999987
Q ss_pred hccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhh--ccccceEEEEcccccccChhh--HHHHHHHH--
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYL--GQLLWNYCILDEGHIIKNSKS--KITVAVKQ-- 1597 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L--~~i~w~~VILDEaH~IKN~~S--k~skalk~-- 1597 (1806)
.. ...++....|...... ..+..++|+|+|++.+......- .-..++++|+||+|.+.+... .....+..
T Consensus 89 ~~-~g~~v~~~~G~~~~~~---~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~ 164 (674)
T PRK01172 89 RS-LGMRVKISIGDYDDPP---DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSAR 164 (674)
T ss_pred hh-cCCeEEEEeCCCCCCh---hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHH
Confidence 53 3567777777653322 12357899999998764332210 112468999999999965322 12222222
Q ss_pred -hhh-cceEEeccCCCCCChhhHH
Q 000237 1598 -LKA-AHRLILSGTPIQNNITDLW 1619 (1806)
Q Consensus 1598 -L~A-~~RLlLTGTPIqNnl~ELw 1619 (1806)
+.. ...+++|||+- |..++-
T Consensus 165 ~~~~~~riI~lSATl~--n~~~la 186 (674)
T PRK01172 165 YVNPDARILALSATVS--NANELA 186 (674)
T ss_pred hcCcCCcEEEEeCccC--CHHHHH
Confidence 222 34688999973 345543
No 50
>PRK02362 ski2-like helicase; Provisional
Probab=98.60 E-value=4.1e-07 Score=120.73 Aligned_cols=158 Identities=21% Similarity=0.135 Sum_probs=106.9
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
+|+|+|.+++.-. ...+.+.+++-.+|.|||+.+...+...... .+++|+|+| ..|+.|+.+++.+|
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~kal~i~P~raLa~q~~~~~~~~ 90 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKALYIVPLRALASEKFEEFERF 90 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcEEEEeChHHHHHHHHHHHHHh
Confidence 6899999999642 2346688999999999999885444332211 157999999 77999999999988
Q ss_pred hccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh--hccccceEEEEcccccccChhh--HHHHHHHHh-
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKNSKS--KITVAVKQL- 1598 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN~~S--k~skalk~L- 1598 (1806)
.. ..+++..+.|...... ..+..++|+|+|++.+...... ..-...+++|+||+|.+.++.. .....+..+
T Consensus 91 ~~-~g~~v~~~tGd~~~~~---~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~ 166 (737)
T PRK02362 91 EE-LGVRVGISTGDYDSRD---EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLR 166 (737)
T ss_pred hc-CCCEEEEEeCCcCccc---cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHH
Confidence 53 3578888888754332 2446789999999877543321 0012468999999999975332 222223333
Q ss_pred ---hhcceEEeccCCCCCChhhHHh
Q 000237 1599 ---KAAHRLILSGTPIQNNITDLWS 1620 (1806)
Q Consensus 1599 ---~A~~RLlLTGTPIqNnl~ELwS 1620 (1806)
.....++||+|.- |..++..
T Consensus 167 ~~~~~~qii~lSATl~--n~~~la~ 189 (737)
T PRK02362 167 RLNPDLQVVALSATIG--NADELAD 189 (737)
T ss_pred hcCCCCcEEEEcccCC--CHHHHHH
Confidence 2335688999973 4555543
No 51
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.57 E-value=5.1e-07 Score=112.35 Aligned_cols=164 Identities=13% Similarity=0.048 Sum_probs=104.7
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcC-CccCCCcEEEEec-cccHHHHHHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASN-SIEEIHPSLIICP-STLVGHWAFEIEK 1522 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~-~~~~~~ptLIVcP-~SLl~qW~~Ei~k 1522 (1806)
.+.|.|.+++..+. .+...++...+|.|||+..+..+........... .......+||+|| ..|..||.+++.+
T Consensus 30 ~pt~iQ~~aip~il----~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTL----AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHh----CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 45789999997553 4557799999999999876544433222111100 0011246899999 5588999999999
Q ss_pred hhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHh--hhccccceEEEEcccccccChh--hHHHHHHHHh
Q 000237 1523 FIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDAD--YLGQLLWNYCILDEGHIIKNSK--SKITVAVKQL 1598 (1806)
Q Consensus 1523 f~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~--~L~~i~w~~VILDEaH~IKN~~--Sk~skalk~L 1598 (1806)
+.....+++..+.|...........-...+|+|+|.+.+..... .+.--.+.++|+||+|++-+.. ......+..+
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~ 185 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRM 185 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhC
Confidence 88666788887777654332222222457999999998865442 2223457899999999985432 1222233333
Q ss_pred h---hcceEEeccCCCC
Q 000237 1599 K---AAHRLILSGTPIQ 1612 (1806)
Q Consensus 1599 ~---A~~RLlLTGTPIq 1612 (1806)
. ....+++|+|.-.
T Consensus 186 ~~~~~~~~~l~SAT~~~ 202 (423)
T PRK04837 186 PPANQRLNMLFSATLSY 202 (423)
T ss_pred CCccceeEEEEeccCCH
Confidence 2 2235788999753
No 52
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.54 E-value=1.2e-06 Score=117.96 Aligned_cols=160 Identities=18% Similarity=0.200 Sum_probs=101.0
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHH--
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIE-- 1521 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~-- 1521 (1806)
.|+|+|.+++..+ ..+.+.+++-.+|.|||+.++..+..................+|+|+| ..|..++.+.+.
T Consensus 32 ~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~ 107 (876)
T PRK13767 32 TFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEP 107 (876)
T ss_pred CCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Confidence 4999999999765 346689999999999999875544332222111111112246899999 567777766443
Q ss_pred -----Hhh-----ccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHh------hhccccceEEEEccccccc
Q 000237 1522 -----KFI-----DVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDAD------YLGQLLWNYCILDEGHIIK 1585 (1806)
Q Consensus 1522 -----kf~-----~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~------~L~~i~w~~VILDEaH~IK 1585 (1806)
+++ ..+.+++.+.+|......+....-...+|+|||.+.+..... .+ .+..+||+||+|.+-
T Consensus 108 l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l--~~l~~VVIDE~H~l~ 185 (876)
T PRK13767 108 LTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKL--RTVKWVIVDEIHSLA 185 (876)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHH--hcCCEEEEechhhhc
Confidence 333 123677888888765433322222467999999998853321 12 235889999999986
Q ss_pred Chh--hHHHHHHHHh---h--hcceEEeccCC
Q 000237 1586 NSK--SKITVAVKQL---K--AAHRLILSGTP 1610 (1806)
Q Consensus 1586 N~~--Sk~skalk~L---~--A~~RLlLTGTP 1610 (1806)
+.. ......+..+ . ...++++|+|.
T Consensus 186 ~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl 217 (876)
T PRK13767 186 ENKRGVHLSLSLERLEELAGGEFVRIGLSATI 217 (876)
T ss_pred cCccHHHHHHHHHHHHHhcCCCCeEEEEeccc
Confidence 532 2223333333 2 34679999997
No 53
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.54 E-value=8.2e-07 Score=112.21 Aligned_cols=163 Identities=14% Similarity=0.144 Sum_probs=103.3
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhc-CCccCCCcEEEEec-cccHHHHHHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRAS-NSIEEIHPSLIICP-STLVGHWAFEIEK 1522 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~-~~~~~~~ptLIVcP-~SLl~qW~~Ei~k 1522 (1806)
.++++|.+++..+. .+.+.|+.-.+|.|||+..+--+.......... .........|||+| ..|..||.+++..
T Consensus 109 ~~~~iQ~~ai~~~~----~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYTL----AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 58899999997653 456789999999999976543333322221100 00011257899999 5688999999999
Q ss_pred hhccCCceEEEEecChhHHHHHHhh-hcCCcEEEeeHHHHHhhHhh--hccccceEEEEcccccccChh--hHHHHHHHH
Q 000237 1523 FIDVSLMSTLQYVGSAQDRIALREQ-FDKHNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKNSK--SKITVAVKQ 1597 (1806)
Q Consensus 1523 f~~~p~l~vliy~Gs~~~R~~l~~~-l~~~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN~~--Sk~skalk~ 1597 (1806)
+.....+++..+.|........... ....+|+|+|.+.+...... +.--...++|+||+|.+.+.. ....+.+..
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~ 264 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQ 264 (475)
T ss_pred hhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHh
Confidence 8755567787787764322222221 24579999999998543321 111246799999999986532 112223333
Q ss_pred hh---hcceEEeccCCC
Q 000237 1598 LK---AAHRLILSGTPI 1611 (1806)
Q Consensus 1598 L~---A~~RLlLTGTPI 1611 (1806)
+. ....+++|+|..
T Consensus 265 ~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 265 TPRKEERQTLLFSATFT 281 (475)
T ss_pred CCCCCCceEEEEEeecC
Confidence 32 235788999964
No 54
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.54 E-value=9e-07 Score=115.15 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=102.7
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
++.|+|.+++..+. .+...|+.-.+|.|||+..+..+....... .....+||+|| ..|..||.+++.+|
T Consensus 28 ~ptpiQ~~ai~~ll----~g~dvl~~ApTGsGKT~af~lpll~~l~~~------~~~~~~LIL~PTreLa~Qv~~~l~~~ 97 (629)
T PRK11634 28 KPSPIQAECIPHLL----NGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------LKAPQILVLAPTRELAVQVAEAMTDF 97 (629)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------cCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 57899999998764 345678889999999987533332222111 11146899999 45889999999988
Q ss_pred hcc-CCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh--hccccceEEEEcccccccChh--hHHHHHHHHh
Q 000237 1524 IDV-SLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKNSK--SKITVAVKQL 1598 (1806)
Q Consensus 1524 ~~~-p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN~~--Sk~skalk~L 1598 (1806)
... +.+++..++|...............+|||+|.+.+...+.. +.-....++|+||+|.+-+.. ......+..+
T Consensus 98 ~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~l 177 (629)
T PRK11634 98 SKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI 177 (629)
T ss_pred HhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhC
Confidence 643 35777777666543333333335679999999888654321 222346789999999874432 2334445555
Q ss_pred hhc-ceEEeccCC
Q 000237 1599 KAA-HRLILSGTP 1610 (1806)
Q Consensus 1599 ~A~-~RLlLTGTP 1610 (1806)
... ..+++|+|.
T Consensus 178 p~~~q~llfSAT~ 190 (629)
T PRK11634 178 PEGHQTALFSATM 190 (629)
T ss_pred CCCCeEEEEEccC
Confidence 443 457899996
No 55
>PTZ00110 helicase; Provisional
Probab=98.53 E-value=9.2e-07 Score=113.57 Aligned_cols=160 Identities=18% Similarity=0.096 Sum_probs=102.1
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHH-HHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASA-IVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEK 1522 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIa-lia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~k 1522 (1806)
++.|+|.+++..+. .+...|+..++|.|||+..+. ++......... .......+||||| ..|..|+.+++.+
T Consensus 152 ~pt~iQ~~aip~~l----~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~--~~~~gp~~LIL~PTreLa~Qi~~~~~~ 225 (545)
T PTZ00110 152 EPTPIQVQGWPIAL----SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL--RYGDGPIVLVLAPTRELAEQIREQCNK 225 (545)
T ss_pred CCCHHHHHHHHHHh----cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc--cCCCCcEEEEECChHHHHHHHHHHHHH
Confidence 57899999986543 455779999999999987543 22222211110 0111135899999 5588999999999
Q ss_pred hhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh--hccccceEEEEcccccccChh--hHHHHHHHHh
Q 000237 1523 FIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKNSK--SKITVAVKQL 1598 (1806)
Q Consensus 1523 f~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN~~--Sk~skalk~L 1598 (1806)
|.....+++....|...............+|+|+|.+.+...+.. ..-....++|+||||++-... ..+.+.+..+
T Consensus 226 ~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~ 305 (545)
T PTZ00110 226 FGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI 305 (545)
T ss_pred HhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhC
Confidence 986555666665555443333333345679999999887654321 112347899999999986532 1223333444
Q ss_pred hh-cceEEeccCC
Q 000237 1599 KA-AHRLILSGTP 1610 (1806)
Q Consensus 1599 ~A-~~RLlLTGTP 1610 (1806)
+. ...+++|||.
T Consensus 306 ~~~~q~l~~SAT~ 318 (545)
T PTZ00110 306 RPDRQTLMWSATW 318 (545)
T ss_pred CCCCeEEEEEeCC
Confidence 33 3467899996
No 56
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.51 E-value=1.4e-06 Score=112.53 Aligned_cols=164 Identities=17% Similarity=0.096 Sum_probs=105.1
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhh-cCCccCCCcEEEEec-cccHHHHHHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRA-SNSIEEIHPSLIICP-STLVGHWAFEIEK 1522 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~-~~~~~~~~ptLIVcP-~SLl~qW~~Ei~k 1522 (1806)
.+.|.|.+++..+. .+...|+.-.+|.|||+..+..+......... .........+||||| ..|..|+.+++.+
T Consensus 31 ~ptpiQ~~~ip~~l----~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVAL----PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 56789999998764 45567999999999998775554432221110 000111257999999 4588999999999
Q ss_pred hhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh---hccccceEEEEcccccccChh--hHHHHHHHH
Q 000237 1523 FIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY---LGQLLWNYCILDEGHIIKNSK--SKITVAVKQ 1597 (1806)
Q Consensus 1523 f~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~---L~~i~w~~VILDEaH~IKN~~--Sk~skalk~ 1597 (1806)
|.....+++..++|...............+|+|+|.+.+...+.. +.-....++|+||+|.+-... ..+...+..
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~ 186 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRR 186 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHh
Confidence 986666777777776543222222224579999999888655432 222346789999999874321 122223333
Q ss_pred hh---hcceEEeccCCCC
Q 000237 1598 LK---AAHRLILSGTPIQ 1612 (1806)
Q Consensus 1598 L~---A~~RLlLTGTPIq 1612 (1806)
+. ....+++|+|.-.
T Consensus 187 lp~~~~~q~ll~SATl~~ 204 (572)
T PRK04537 187 MPERGTRQTLLFSATLSH 204 (572)
T ss_pred cccccCceEEEEeCCccH
Confidence 33 2346889999643
No 57
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.51 E-value=4.2e-07 Score=119.73 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=111.1
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
+|+++|+++|.-.. .. +.+.++|-.+|.|||+.+...+......+. ++++-||| ++|..+=.+||.+|
T Consensus 31 el~~~qq~av~~~~--~~-~~N~li~aPTgsGKTlIA~lai~~~l~~~~--------~k~vYivPlkALa~Ek~~~~~~~ 99 (766)
T COG1204 31 ELFNPQQEAVEKGL--LS-DENVLISAPTGSGKTLIALLAILSTLLEGG--------GKVVYIVPLKALAEEKYEEFSRL 99 (766)
T ss_pred HhhHHHHHHhhccc--cC-CCcEEEEcCCCCchHHHHHHHHHHHHHhcC--------CcEEEEeChHHHHHHHHHHhhhH
Confidence 89999999995332 22 678899999999999999777766554321 68999999 78999999999955
Q ss_pred hccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhh--ccccceEEEEcccccccCh-hhHHH----HHHH
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYL--GQLLWNYCILDEGHIIKNS-KSKIT----VAVK 1596 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L--~~i~w~~VILDEaH~IKN~-~Sk~s----kalk 1596 (1806)
-. -.++|.+++|...... +++.+++|+||||+.+-.-.... .....++||+||+|.+... .-... .-++
T Consensus 100 ~~-~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~ 175 (766)
T COG1204 100 EE-LGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMR 175 (766)
T ss_pred Hh-cCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHH
Confidence 42 4689999999876443 46678999999999874322111 2234689999999999765 22111 1122
Q ss_pred Hhhhc-ceEEeccCCCCCChhhHHh
Q 000237 1597 QLKAA-HRLILSGTPIQNNITDLWS 1620 (1806)
Q Consensus 1597 ~L~A~-~RLlLTGTPIqNnl~ELwS 1620 (1806)
..... +.++||+|- .|..|+-.
T Consensus 176 ~~~~~~rivgLSATl--pN~~evA~ 198 (766)
T COG1204 176 RLNELIRIVGLSATL--PNAEEVAD 198 (766)
T ss_pred hhCcceEEEEEeeec--CCHHHHHH
Confidence 22332 456799995 34455443
No 58
>PRK00254 ski2-like helicase; Provisional
Probab=98.51 E-value=1.2e-06 Score=116.18 Aligned_cols=158 Identities=18% Similarity=0.126 Sum_probs=107.0
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEK 1522 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~k 1522 (1806)
.+|+|+|.+++.-. ...+.+.+++-.+|.|||+.+...+....... .+++|+|+| ..|+.++.+++.+
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--------~~~~l~l~P~~aLa~q~~~~~~~ 90 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--------GGKAVYLVPLKALAEEKYREFKD 90 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--------CCeEEEEeChHHHHHHHHHHHHH
Confidence 46899999999631 23556789999999999998844333222111 157999999 6688999999998
Q ss_pred hhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHh----hhccccceEEEEcccccccCh--hhHHHHHHH
Q 000237 1523 FIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDAD----YLGQLLWNYCILDEGHIIKNS--KSKITVAVK 1596 (1806)
Q Consensus 1523 f~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~----~L~~i~w~~VILDEaH~IKN~--~Sk~skalk 1596 (1806)
|.. -.+++..++|...... ..+..++|+|+|++.+-.... .+ .+.+++|+||+|.+... .......+.
T Consensus 91 ~~~-~g~~v~~~~Gd~~~~~---~~~~~~~IiV~Tpe~~~~ll~~~~~~l--~~l~lvViDE~H~l~~~~rg~~le~il~ 164 (720)
T PRK00254 91 WEK-LGLRVAMTTGDYDSTD---EWLGKYDIIIATAEKFDSLLRHGSSWI--KDVKLVVADEIHLIGSYDRGATLEMILT 164 (720)
T ss_pred Hhh-cCCEEEEEeCCCCCch---hhhccCCEEEEcHHHHHHHHhCCchhh--hcCCEEEEcCcCccCCccchHHHHHHHH
Confidence 753 3578888888654322 234678999999987754322 22 24689999999998643 333444444
Q ss_pred Hhh-hcceEEeccCCCCCChhhHHh
Q 000237 1597 QLK-AAHRLILSGTPIQNNITDLWS 1620 (1806)
Q Consensus 1597 ~L~-A~~RLlLTGTPIqNnl~ELwS 1620 (1806)
.+. ....++||+|.- |..++-.
T Consensus 165 ~l~~~~qiI~lSATl~--n~~~la~ 187 (720)
T PRK00254 165 HMLGRAQILGLSATVG--NAEELAE 187 (720)
T ss_pred hcCcCCcEEEEEccCC--CHHHHHH
Confidence 543 345678999973 3555544
No 59
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.50 E-value=1.1e-06 Score=114.07 Aligned_cols=163 Identities=15% Similarity=0.093 Sum_probs=107.8
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
++||+|++++.-+. .+...++.-.+|.|||+....-+. .. .+.+|||+| .+|+.+|...+..+
T Consensus 25 ~~r~~Q~~ai~~il----~g~dvlv~apTGsGKTl~y~lpal--~~----------~g~tlVisPl~sL~~dqv~~l~~~ 88 (607)
T PRK11057 25 QFRPGQQEIIDAVL----SGRDCLVVMPTGGGKSLCYQIPAL--VL----------DGLTLVVSPLISLMKDQVDQLLAN 88 (607)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHH--Hc----------CCCEEEEecHHHHHHHHHHHHHHc
Confidence 68999999997653 456789999999999986432222 11 157999999 56889999998876
Q ss_pred hccCCceEEEEecChhH--HHHHHh--hhcCCcEEEeeHHHHHh--hHhhhccccceEEEEcccccccChh---hHHHHH
Q 000237 1524 IDVSLMSTLQYVGSAQD--RIALRE--QFDKHNVIITSYDVVRK--DADYLGQLLWNYCILDEGHIIKNSK---SKITVA 1594 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~--R~~l~~--~l~~~dVVITSYe~Lr~--di~~L~~i~w~~VILDEaH~IKN~~---Sk~ska 1594 (1806)
. +....+.+.... ...... ..+..+++++|.+.+.. ..+.+....+.++|+||+|.+-.-. ...++.
T Consensus 89 g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~ 164 (607)
T PRK11057 89 G----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAA 164 (607)
T ss_pred C----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHH
Confidence 3 344444444322 222222 22467899999988763 2344555678999999999875321 122333
Q ss_pred HHHh----hhcceEEeccCCCCCChhhHHhhhhhhCC
Q 000237 1595 VKQL----KAAHRLILSGTPIQNNITDLWSLFDFLMP 1627 (1806)
Q Consensus 1595 lk~L----~A~~RLlLTGTPIqNnl~ELwSLL~FL~P 1627 (1806)
+..+ .....+++|||+-.....++...+.+-.|
T Consensus 165 L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~ 201 (607)
T PRK11057 165 LGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP 201 (607)
T ss_pred HHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCe
Confidence 4333 34457899999988777777776654443
No 60
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.48 E-value=1.4e-06 Score=113.13 Aligned_cols=162 Identities=12% Similarity=0.119 Sum_probs=109.5
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
++||+|.+++.-+. .+...+++..+|.|||+.....+. .. .+.++||+| .+|+.++...+..+
T Consensus 13 ~fr~~Q~~~i~~il----~g~dvlv~~PTG~GKTl~y~lpal--~~----------~g~~lVisPl~sL~~dq~~~l~~~ 76 (591)
T TIGR01389 13 DFRPGQEEIISHVL----DGRDVLVVMPTGGGKSLCYQVPAL--LL----------KGLTVVISPLISLMKDQVDQLRAA 76 (591)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCccHhHHHHHHHH--Hc----------CCcEEEEcCCHHHHHHHHHHHHHc
Confidence 68999999998664 345789999999999987643222 11 157899999 66889999998886
Q ss_pred hccCCceEEEEecCh--hHHHHHHhh--hcCCcEEEeeHHHHHh--hHhhhccccceEEEEcccccccChh---hHHHHH
Q 000237 1524 IDVSLMSTLQYVGSA--QDRIALREQ--FDKHNVIITSYDVVRK--DADYLGQLLWNYCILDEGHIIKNSK---SKITVA 1594 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~--~~R~~l~~~--l~~~dVVITSYe~Lr~--di~~L~~i~w~~VILDEaH~IKN~~---Sk~ska 1594 (1806)
. ..+..+++.. .++...... .+..+++++|.+.+.+ ....+......++|+||+|.+..-. ...+..
T Consensus 77 g----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~ 152 (591)
T TIGR01389 77 G----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQR 152 (591)
T ss_pred C----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHH
Confidence 3 4455555543 222222222 2567899999998854 2345566778999999999985311 122233
Q ss_pred HH----HhhhcceEEeccCCCCCChhhHHhhhhhhC
Q 000237 1595 VK----QLKAAHRLILSGTPIQNNITDLWSLFDFLM 1626 (1806)
Q Consensus 1595 lk----~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~ 1626 (1806)
+. .+.....+++|||+......++...+.+-.
T Consensus 153 l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~ 188 (591)
T TIGR01389 153 LGSLAERFPQVPRIALTATADAETRQDIRELLRLAD 188 (591)
T ss_pred HHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 33 333455899999998887777777665433
No 61
>PRK09401 reverse gyrase; Reviewed
Probab=98.48 E-value=1.5e-06 Score=119.11 Aligned_cols=130 Identities=16% Similarity=0.177 Sum_probs=91.9
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIE 1521 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~ 1521 (1806)
...++++|+.++..+. .+...++...+|.|||.-.+.++.. .... ...+|||+| ..|+.||.+.++
T Consensus 78 G~~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~f~l~~~~~--l~~~-------g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLL----LGESFAIIAPTGVGKTTFGLVMSLY--LAKK-------GKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred CCCCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHHHHHHHHHH--HHhc-------CCeEEEEeccHHHHHHHHHHHH
Confidence 4478999998886543 4557788899999999643332222 1111 157999999 558899999999
Q ss_pred HhhccCCceEEEEecCh----hHHHHHHhhh--cCCcEEEeeHHHHHhhHhhhccccceEEEEccccccc
Q 000237 1522 KFIDVSLMSTLQYVGSA----QDRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIK 1585 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~----~~R~~l~~~l--~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IK 1585 (1806)
+++....+.+....|.. .++......+ +.++|+|+|.+.+.+..+.+....++++|+||+|++-
T Consensus 145 ~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 145 KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhh
Confidence 99865555554444332 2333333333 4589999999999988877766679999999999874
No 62
>COG4889 Predicted helicase [General function prediction only]
Probab=98.38 E-value=6.3e-07 Score=113.24 Aligned_cols=165 Identities=22% Similarity=0.196 Sum_probs=107.2
Q ss_pred CccCcccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecc-ccHH
Q 000237 1436 YKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS-TLVG 1514 (1806)
Q Consensus 1436 ~~ip~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~-SLl~ 1514 (1806)
..+|..-...|||||+.+++-.......+-.|=|-..+|.|||.+++-+.-.+.. .++|.++|+ +|+.
T Consensus 152 ~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----------~~iL~LvPSIsLLs 220 (1518)
T COG4889 152 DNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----------ARILFLVPSISLLS 220 (1518)
T ss_pred cccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----------hheEeecchHHHHH
Confidence 4566666789999999999887777777778877778999999999988766543 478999994 5888
Q ss_pred HHHHHHHHhhccCCceEEEEecChhHH------------------HHHHh------hhcCCcEEEeeHHHHHhhHh--hh
Q 000237 1515 HWAFEIEKFIDVSLMSTLQYVGSAQDR------------------IALRE------QFDKHNVIITSYDVVRKDAD--YL 1568 (1806)
Q Consensus 1515 qW~~Ei~kf~~~p~l~vliy~Gs~~~R------------------~~l~~------~l~~~dVVITSYe~Lr~di~--~L 1568 (1806)
|--+|+..-...+.....+.......| ..+.. .-..--||+.||+.+-...+ ..
T Consensus 221 QTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~ 300 (1518)
T COG4889 221 QTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEA 300 (1518)
T ss_pred HHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHc
Confidence 766665554322222222221111111 11111 11234599999999865433 33
Q ss_pred ccccceEEEEcccccccC------hhhHHHH--HHHHhhhcceEEeccCCC
Q 000237 1569 GQLLWNYCILDEGHIIKN------SKSKITV--AVKQLKAAHRLILSGTPI 1611 (1806)
Q Consensus 1569 ~~i~w~~VILDEaH~IKN------~~Sk~sk--alk~L~A~~RLlLTGTPI 1611 (1806)
.--.|++||+||||+-.. ..|..++ .-..+++..|+.+|+||-
T Consensus 301 G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPk 351 (1518)
T COG4889 301 GLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPK 351 (1518)
T ss_pred CCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCch
Confidence 345699999999998643 1122211 123457888999999994
No 63
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.37 E-value=2.4e-06 Score=108.47 Aligned_cols=160 Identities=18% Similarity=0.299 Sum_probs=115.6
Q ss_pred cccccchHHHHHHHHHHHHhhcC--CceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecccc-HHHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFK--LHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTL-VGHWAF 1518 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~--~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SL-l~qW~~ 1518 (1806)
+..+|-..|+.+++=+..=.... .+=+|--|+|.|||+.++..+......+ .-+...+|..+ ..|-..
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---------~Q~ALMAPTEILA~QH~~ 329 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---------YQAALMAPTEILAEQHYE 329 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---------CeeEEeccHHHHHHHHHH
Confidence 44578889999997654322222 2236777999999999877666554432 45788899775 489999
Q ss_pred HHHHhhccCCceEEEEecChh--HHHHHHhhh--cCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHH
Q 000237 1519 EIEKFIDVSLMSTLQYVGSAQ--DRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVA 1594 (1806)
Q Consensus 1519 Ei~kf~~~p~l~vliy~Gs~~--~R~~l~~~l--~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~ska 1594 (1806)
.+.+|++.-++++....|+-+ .|....+.+ +..++||-|+..+...+++ .+..+||+||=|++. ...-..
T Consensus 330 ~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFG---V~QR~~ 403 (677)
T COG1200 330 SLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFG---VHQRLA 403 (677)
T ss_pred HHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceee---cceeEEEEecccccc---HHHHHH
Confidence 999999766789988888754 455555544 5679999999988766543 457899999999984 333333
Q ss_pred HHHh-h-hcceEEeccCCCCCChh
Q 000237 1595 VKQL-K-AAHRLILSGTPIQNNIT 1616 (1806)
Q Consensus 1595 lk~L-~-A~~RLlLTGTPIqNnl~ 1616 (1806)
++.- . ..|.++||||||+..+.
T Consensus 404 L~~KG~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 404 LREKGEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred HHHhCCCCCcEEEEeCCCchHHHH
Confidence 4433 3 57999999999998864
No 64
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.35 E-value=3.6e-06 Score=112.43 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=107.8
Q ss_pred cchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhh
Q 000237 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFI 1524 (1806)
Q Consensus 1446 LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~ 1524 (1806)
|+.||.++.+.+ ..+.+-|+.-.+|.|||..-+.-|........ ..+.|+|-| +.|...=.+++.+|.
T Consensus 71 lY~HQ~~A~~~~----~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-------~a~AL~lYPtnALa~DQ~~rl~~~~ 139 (851)
T COG1205 71 LYSHQVDALRLI----REGRNVVVTTGTGSGKTESFLLPILDHLLRDP-------SARALLLYPTNALANDQAERLRELI 139 (851)
T ss_pred ccHHHHHHHHHH----HCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-------CccEEEEechhhhHhhHHHHHHHHH
Confidence 999999999876 35678999999999999876544443322211 147899999 567777888899987
Q ss_pred ccC--CceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhH------hhhccccceEEEEcccccccC-hhhHHHHHH
Q 000237 1525 DVS--LMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDA------DYLGQLLWNYCILDEGHIIKN-SKSKITVAV 1595 (1806)
Q Consensus 1525 ~~p--~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di------~~L~~i~w~~VILDEaH~IKN-~~Sk~skal 1595 (1806)
..- .+++..|+|......+..-.-...+|++|+|+++-..+ -.+..-++.|+|+||+|..+. -.|..+-.+
T Consensus 140 ~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~ll 219 (851)
T COG1205 140 SDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLL 219 (851)
T ss_pred HhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHH
Confidence 533 47888899976543332223357899999999986421 111122389999999999876 567777777
Q ss_pred HHhhhc--------ceEEeccCC
Q 000237 1596 KQLKAA--------HRLILSGTP 1610 (1806)
Q Consensus 1596 k~L~A~--------~RLlLTGTP 1610 (1806)
++|+-. ..++.|||=
T Consensus 220 RRL~~~~~~~~~~~q~i~~SAT~ 242 (851)
T COG1205 220 RRLLRRLRRYGSPLQIICTSATL 242 (851)
T ss_pred HHHHHHHhccCCCceEEEEeccc
Confidence 777322 236677764
No 65
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.29 E-value=8.2e-06 Score=108.24 Aligned_cols=151 Identities=17% Similarity=0.246 Sum_probs=102.0
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
+|++||.+++..+ ..+.+.+++-.+|.|||+..+.-+....... .....|||+| ..|..|=.++++++
T Consensus 36 ~p~~~Q~~ai~~i----l~G~nvvv~apTGSGKTla~~LPiL~~l~~~-------~~~~aL~l~PtraLa~q~~~~l~~l 104 (742)
T TIGR03817 36 RPWQHQARAAELA----HAGRHVVVATGTASGKSLAYQLPVLSALADD-------PRATALYLAPTKALAADQLRAVREL 104 (742)
T ss_pred cCCHHHHHHHHHH----HCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-------CCcEEEEEcChHHHHHHHHHHHHHh
Confidence 5899999999865 3566789999999999987644433322211 1147899999 56888888889988
Q ss_pred hccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhH--------hhhccccceEEEEcccccccC-hhhHHHHH
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDA--------DYLGQLLWNYCILDEGHIIKN-SKSKITVA 1594 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di--------~~L~~i~w~~VILDEaH~IKN-~~Sk~ska 1594 (1806)
. ...+++..|.|......+ .......+|+|||.+.+.... ..+ -+..++|+||+|.+.+ ..+.....
T Consensus 105 ~-~~~i~v~~~~Gdt~~~~r-~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l--~~l~~vViDEah~~~g~fg~~~~~i 180 (742)
T TIGR03817 105 T-LRGVRPATYDGDTPTEER-RWAREHARYVLTNPDMLHRGILPSHARWARFL--RRLRYVVIDECHSYRGVFGSHVALV 180 (742)
T ss_pred c-cCCeEEEEEeCCCCHHHH-HHHhcCCCEEEEChHHHHHhhccchhHHHHHH--hcCCEEEEeChhhccCccHHHHHHH
Confidence 6 346788889887643222 111235799999999886321 112 2358999999999865 23444444
Q ss_pred HHHhh--------hcceEEeccCC
Q 000237 1595 VKQLK--------AAHRLILSGTP 1610 (1806)
Q Consensus 1595 lk~L~--------A~~RLlLTGTP 1610 (1806)
+..++ ....+++|+|-
T Consensus 181 l~rL~ri~~~~g~~~q~i~~SATi 204 (742)
T TIGR03817 181 LRRLRRLCARYGASPVFVLASATT 204 (742)
T ss_pred HHHHHHHHHhcCCCCEEEEEecCC
Confidence 44442 13468899995
No 66
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.28 E-value=7.9e-06 Score=107.48 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=100.5
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecc-ccHHHHHHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS-TLVGHWAFEIEK 1522 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~-SLl~qW~~Ei~k 1522 (1806)
..|+++|+++++.+.... .+...++.-.+|.|||...+..+......+ +.+||++|. .|+.||.+.+++
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g---------~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG---------KQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC---------CeEEEEeCcHHHHHHHHHHHHH
Confidence 369999999998775422 234578889999999998876665443321 579999994 588999999999
Q ss_pred hhccCCceEEEEecChh--HHHHHHhh--hcCCcEEEeeHHHHHhhHhhhccccceEEEEccccccc--ChhhHHH--HH
Q 000237 1523 FIDVSLMSTLQYVGSAQ--DRIALREQ--FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIK--NSKSKIT--VA 1594 (1806)
Q Consensus 1523 f~~~p~l~vliy~Gs~~--~R~~l~~~--l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IK--N~~Sk~s--ka 1594 (1806)
+++ .++..++|... ++...... .+..+|||.|.+.+. +.-.++++||+||+|... ......+ +.
T Consensus 213 ~fg---~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 213 RFG---APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred HhC---CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 873 46777776533 33322222 245789999987653 222357899999999753 2222111 11
Q ss_pred HHHh----hhcceEEeccCCCCCC
Q 000237 1595 VKQL----KAAHRLILSGTPIQNN 1614 (1806)
Q Consensus 1595 lk~L----~A~~RLlLTGTPIqNn 1614 (1806)
+..+ .....+++|+||....
T Consensus 285 va~~ra~~~~~~~il~SATps~~s 308 (679)
T PRK05580 285 LAVVRAKLENIPVVLGSATPSLES 308 (679)
T ss_pred HHHHHhhccCCCEEEEcCCCCHHH
Confidence 2122 2345688899996443
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.23 E-value=1.5e-05 Score=97.64 Aligned_cols=150 Identities=16% Similarity=0.121 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhhc--
Q 000237 1449 YQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFID-- 1525 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~~-- 1525 (1806)
||.++++-+... .....+++-.+|.|||..++..+.. . ..++++++| .+|..+|.+.+++++.
T Consensus 1 hQ~~~~~~~~~~--~~~~~~i~apTGsGKT~~~~~~~l~----~--------~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSK--DADIIFNTAPTGAGKTLAWLTPLLH----G--------ENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcC--CCCEEEEECCCCCCHHHHHHHHHHH----c--------CCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 788888766321 1123578999999999877544431 1 146899999 6688999999999873
Q ss_pred --cCCceEEEEecChhHH-HHH-----------------Hh--hhcCCcEEEeeHHHHHhhHhhh----------ccccc
Q 000237 1526 --VSLMSTLQYVGSAQDR-IAL-----------------RE--QFDKHNVIITSYDVVRKDADYL----------GQLLW 1573 (1806)
Q Consensus 1526 --~p~l~vliy~Gs~~~R-~~l-----------------~~--~l~~~dVVITSYe~Lr~di~~L----------~~i~w 1573 (1806)
.....+..+.|..... ... +. ......+++|+++.+....... ....+
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 2356677788762211 011 11 1235789999998886432111 01357
Q ss_pred eEEEEcccccccChhh-------HHHHHHHHhh-hcceEEeccCCCC
Q 000237 1574 NYCILDEGHIIKNSKS-------KITVAVKQLK-AAHRLILSGTPIQ 1612 (1806)
Q Consensus 1574 ~~VILDEaH~IKN~~S-------k~skalk~L~-A~~RLlLTGTPIq 1612 (1806)
.++|+||+|.+..... .....+.... ..+.+++||||-.
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~ 193 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP 193 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH
Confidence 8999999999864221 1112222222 3477889999853
No 68
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.04 E-value=3e-05 Score=104.08 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=102.6
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEK 1522 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~k 1522 (1806)
..+||+|+++|..+. .+...++...+|.|||+...--+.. . .+.+|||+| .+|+..+...+..
T Consensus 459 ~sFRp~Q~eaI~aiL----~GrDVLVimPTGSGKSLcYQLPAL~--~----------~GiTLVISPLiSLmqDQV~~L~~ 522 (1195)
T PLN03137 459 HSFRPNQREIINATM----SGYDVFVLMPTGGGKSLTYQLPALI--C----------PGITLVISPLVSLIQDQIMNLLQ 522 (1195)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCccHHHHHHHHHHH--c----------CCcEEEEeCHHHHHHHHHHHHHh
Confidence 479999999997653 4567899999999999764322221 1 157999999 5677655555544
Q ss_pred hhccCCceEEEEecChh--HHHHHHhh----hcCCcEEEeeHHHHHhh------Hhhhc-cccceEEEEcccccccChh-
Q 000237 1523 FIDVSLMSTLQYVGSAQ--DRIALREQ----FDKHNVIITSYDVVRKD------ADYLG-QLLWNYCILDEGHIIKNSK- 1588 (1806)
Q Consensus 1523 f~~~p~l~vliy~Gs~~--~R~~l~~~----l~~~dVVITSYe~Lr~d------i~~L~-~i~w~~VILDEaH~IKN~~- 1588 (1806)
. .++...+.|... +....... .+.++|+++|.+.+... ...+. .....++||||||.+-.-.
T Consensus 523 ~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGh 598 (1195)
T PLN03137 523 A----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGH 598 (1195)
T ss_pred C----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhccc
Confidence 3 344544444332 22222222 25789999999987532 22222 1236889999999874321
Q ss_pred --hHHHHHHHH----hhhcceEEeccCCCCCChhhHHhhhhhhC
Q 000237 1589 --SKITVAVKQ----LKAAHRLILSGTPIQNNITDLWSLFDFLM 1626 (1806)
Q Consensus 1589 --Sk~skalk~----L~A~~RLlLTGTPIqNnl~ELwSLL~FL~ 1626 (1806)
...++.+.. +.....++||||...+...++...+.+..
T Consensus 599 DFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~ 642 (1195)
T PLN03137 599 DFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVN 642 (1195)
T ss_pred chHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCC
Confidence 122333322 34456789999998887777777665443
No 69
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.04 E-value=3.3e-05 Score=106.45 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=90.2
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIE 1521 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~ 1521 (1806)
...++++|+.++..+. .+...++.-.+|.|||.-++.++.... .. ...+|||+| ..|+.|+.+++.
T Consensus 76 g~~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~f~l~~~~~l~--~~-------g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTTFGLAMSLFLA--KK-------GKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred CCCCcHHHHHHHHHHh----CCCeEEEECCCCCCHHHHHHHHHHHHH--hc-------CCeEEEEeCHHHHHHHHHHHHH
Confidence 3478999998886543 445668889999999974443332221 11 157999999 558899999999
Q ss_pred HhhccCCceE---EEEecChh--HHHHHHhhh--cCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccC
Q 000237 1522 KFIDVSLMST---LQYVGSAQ--DRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1522 kf~~~p~l~v---liy~Gs~~--~R~~l~~~l--~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN 1586 (1806)
+++....+.. ..|+|... ++......+ +.++|+|+|...+....+.+.. .++++|+||+|.+-.
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 9984333332 34666432 232333333 3589999999999887776655 899999999998854
No 70
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.03 E-value=3.7e-05 Score=101.11 Aligned_cols=174 Identities=18% Similarity=0.154 Sum_probs=119.1
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIE 1521 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~ 1521 (1806)
-.+|+|+|..++.-. ..|.+.++...+|.|||..|+.-+........ .....+.-.+|-|.| +.|-.--...+.
T Consensus 20 ~~~~t~~Q~~a~~~i----~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkALn~Di~~rL~ 94 (814)
T COG1201 20 FTSLTPPQRYAIPEI----HSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKALNNDIRRRLE 94 (814)
T ss_pred cCCCCHHHHHHHHHH----hCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 357899999999654 37788999999999999999655544443321 111111246899999 667667777787
Q ss_pred HhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhh------HhhhccccceEEEEcccccccCh--hhHHHH
Q 000237 1522 KFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKD------ADYLGQLLWNYCILDEGHIIKNS--KSKITV 1593 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~d------i~~L~~i~w~~VILDEaH~IKN~--~Sk~sk 1593 (1806)
.|...-++.+-+-+|......+.+..-...+|+|||-+++.-. .+.|.+ -.+||+||.|.+.+. ..+++-
T Consensus 95 ~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~--vr~VIVDEiHel~~sKRG~~Lsl 172 (814)
T COG1201 95 EPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRD--VRYVIVDEIHALAESKRGVQLAL 172 (814)
T ss_pred HHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcC--CcEEEeehhhhhhccccchhhhh
Confidence 7776667778788887655444444445789999999998533 233433 468999999999764 345555
Q ss_pred HHHHhh----hcceEEeccCCCCCChhhHHhhhhhhCCC
Q 000237 1594 AVKQLK----AAHRLILSGTPIQNNITDLWSLFDFLMPG 1628 (1806)
Q Consensus 1594 alk~L~----A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg 1628 (1806)
.+.+|. .-.|++||+|=- +..-+-.||.++
T Consensus 173 ~LeRL~~l~~~~qRIGLSATV~-----~~~~varfL~g~ 206 (814)
T COG1201 173 SLERLRELAGDFQRIGLSATVG-----PPEEVAKFLVGF 206 (814)
T ss_pred hHHHHHhhCcccEEEeehhccC-----CHHHHHHHhcCC
Confidence 555552 245899999953 444556677555
No 71
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.91 E-value=6.1e-05 Score=96.15 Aligned_cols=128 Identities=14% Similarity=0.056 Sum_probs=83.9
Q ss_pred EEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhhccCCceEEEEecCh--hHHHHHH
Q 000237 1469 LCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFIDVSLMSTLQYVGSA--QDRIALR 1545 (1806)
Q Consensus 1469 LADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~--~~R~~l~ 1545 (1806)
|.-.+|.|||...+.++......+ +.+||++| .+|+.|+.+.++++++ ..+.++++.. .+|....
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~g---------~~vLvlvP~i~L~~Q~~~~l~~~f~---~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLALG---------KSVLVLVPEIALTPQMIQRFKYRFG---SQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcC---------CeEEEEeCcHHHHHHHHHHHHHHhC---CcEEEEECCCCHHHHHHHH
Confidence 445899999999877765543321 57999999 5689999999999874 3456666643 3443322
Q ss_pred hh--hcCCcEEEeeHHHHHhhHhhhccccceEEEEccccccc--ChhhHHHH------HHHHhhhcceEEeccCCCCC
Q 000237 1546 EQ--FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIK--NSKSKITV------AVKQLKAAHRLILSGTPIQN 1613 (1806)
Q Consensus 1546 ~~--l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IK--N~~Sk~sk------alk~L~A~~RLlLTGTPIqN 1613 (1806)
.. .+..+|||+|...+-. .-.++++||+||.|... ......+. ..........+++|+||...
T Consensus 70 ~~~~~g~~~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHHcCCCCEEECChHHHcC-----cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 22 2567899999987632 23357999999999863 22222221 11222345678899999743
No 72
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.91 E-value=6.8e-05 Score=91.20 Aligned_cols=134 Identities=18% Similarity=0.123 Sum_probs=83.7
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhhccCCceEEEEecChhH------
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFIDVSLMSTLQYVGSAQD------ 1540 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~------ 1540 (1806)
++.-.+|.|||..++..+....... ...++++|+| .+++.++.+.+..+++. ++..++|....
T Consensus 3 vi~apTGsGKT~~~~~~~l~~~~~~-------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01587 3 VIEAPTGYGKTEAALLWALHSIKSQ-------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEM 72 (358)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhhC-------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhcc
Confidence 6788999999999888776543211 1257999999 67999999999998742 33334443221
Q ss_pred -----HHHHHh-------hhcCCcEEEeeHHHHHhhHhh--------hccccceEEEEcccccccChhh-HHHHHHHHhh
Q 000237 1541 -----RIALRE-------QFDKHNVIITSYDVVRKDADY--------LGQLLWNYCILDEGHIIKNSKS-KITVAVKQLK 1599 (1806)
Q Consensus 1541 -----R~~l~~-------~l~~~dVVITSYe~Lr~di~~--------L~~i~w~~VILDEaH~IKN~~S-k~skalk~L~ 1599 (1806)
...... .....+++++|.+.+...... +......++|+||+|.+..... .....+..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~ 152 (358)
T TIGR01587 73 GDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK 152 (358)
T ss_pred CCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 001111 123467999999987654322 1122347899999999865322 2333333333
Q ss_pred --hcceEEeccCCC
Q 000237 1600 --AAHRLILSGTPI 1611 (1806)
Q Consensus 1600 --A~~RLlLTGTPI 1611 (1806)
....+++|||+-
T Consensus 153 ~~~~~~i~~SATlp 166 (358)
T TIGR01587 153 DNDVPILLMSATLP 166 (358)
T ss_pred HcCCCEEEEecCch
Confidence 234688999974
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.90 E-value=6.9e-05 Score=98.22 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=97.3
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf 1523 (1806)
.+||||.+.+..+.. +.|+|..-.+|.|||++++.-+...... ...++||+|.. |..+|.+++..+
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l 134 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPV 134 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHH
Confidence 478888887765532 3457999999999999876553221111 14689999955 888888888776
Q ss_pred hccCCceEEEEecC-hh--HHHHHHhhhcCCcEEEeeHHHHHhhH--h-------hhccccceEEEEcccccccChhhHH
Q 000237 1524 IDVSLMSTLQYVGS-AQ--DRIALREQFDKHNVIITSYDVVRKDA--D-------YLGQLLWNYCILDEGHIIKNSKSKI 1591 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs-~~--~R~~l~~~l~~~dVVITSYe~Lr~di--~-------~L~~i~w~~VILDEaH~IKN~~Sk~ 1591 (1806)
...-.+++....+. .. .....+.....++|+++|.+.+..+. + .+....+.++|+||+|.+---
T Consensus 135 ~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD---- 210 (762)
T TIGR03714 135 YEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD---- 210 (762)
T ss_pred HhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc----
Confidence 64445666654442 11 11112223356899999998884331 1 122345789999999987211
Q ss_pred HHHHHHhhhcceEEeccCCCCCChhhHHhhhh
Q 000237 1592 TVAVKQLKAAHRLILSGTPIQNNITDLWSLFD 1623 (1806)
Q Consensus 1592 skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~ 1623 (1806)
.++..+++||.|-.+ .++|..++
T Consensus 211 -------eartpliisg~~~~~--~~~y~~~~ 233 (762)
T TIGR03714 211 -------SAQTPLVISGAPRVQ--SNLYHIAD 233 (762)
T ss_pred -------cCcCCeeeeCCCccc--hHHHHHHH
Confidence 355678999976533 34666553
No 74
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.86 E-value=0.00012 Score=98.04 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=108.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCCc--eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH-HHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLH--GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV-GHWAF 1518 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~g--GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl-~qW~~ 1518 (1806)
|..+--|-|..+++-...=...+.- =++|-|+|.|||=+|+-.+-..... .+-+-|+||.+++ .|-.+
T Consensus 591 FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---------GKQVAvLVPTTlLA~QHy~ 661 (1139)
T COG1197 591 FPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---------GKQVAVLVPTTLLAQQHYE 661 (1139)
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---------CCeEEEEcccHHhHHHHHH
Confidence 4556778899999866433333322 3999999999999886544221111 1579999999966 56666
Q ss_pred HHHHhhccCCceEEEEe--cChhHHHHHHhhh--cCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHH
Q 000237 1519 EIEKFIDVSLMSTLQYV--GSAQDRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVA 1594 (1806)
Q Consensus 1519 Ei~kf~~~p~l~vliy~--Gs~~~R~~l~~~l--~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~ska 1594 (1806)
.|.+-+..-.+++-... -+.++.....+.+ ++-||||-|+..+.+++.+ .+-+++|+||=|++. =+.-..
T Consensus 662 tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFG---Vk~KEk 735 (1139)
T COG1197 662 TFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFG---VKHKEK 735 (1139)
T ss_pred HHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEE---ecCCeEEEechhhcC---ccHHHH
Confidence 66655521223333322 2344444455544 6779999999999988754 346899999999974 345567
Q ss_pred HHHhhhc-ceEEeccCCCCCChh
Q 000237 1595 VKQLKAA-HRLILSGTPIQNNIT 1616 (1806)
Q Consensus 1595 lk~L~A~-~RLlLTGTPIqNnl~ 1616 (1806)
+|.++++ +.+-||||||+..+.
T Consensus 736 LK~Lr~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 736 LKELRANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred HHHHhccCcEEEeeCCCCcchHH
Confidence 8888654 688899999998753
No 75
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0046 Score=82.64 Aligned_cols=92 Identities=26% Similarity=0.352 Sum_probs=76.1
Q ss_pred HHHHHHHHhhcCChhhHH-HHHHHHHhhccCCceeeecccccchhhhhhhhhhhHHhHHhhHHHHHHccCCCCCchHHHh
Q 000237 533 CAQALGAAFKYMHPSLVY-ETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAV 611 (1806)
Q Consensus 533 ~AQ~Lgall~~m~~~~v~-~~~~iLl~~q~~~~WEvrHGgLLGiKYlvAVR~dll~~lL~~Vl~a~~~GL~D~DDDVraV 611 (1806)
+-|+|-.+-.|++++.|. -++..+.+|...+.|--||.||+.|-=.+-==.|.+...||.|+|+|+.||+|++-+||-.
T Consensus 329 A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~A 408 (1075)
T KOG2171|consen 329 AEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYA 408 (1075)
T ss_pred HHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 468888889999988644 4556678888999999999999998776665667777799999999999999999999999
Q ss_pred HHhhhhhhHHHHH
Q 000237 612 AADALIPTAAAIV 624 (1806)
Q Consensus 612 AA~~L~Pia~~~v 624 (1806)
|--++==++..|-
T Consensus 409 A~naigQ~stdl~ 421 (1075)
T KOG2171|consen 409 ALNAIGQMSTDLQ 421 (1075)
T ss_pred HHHHHHhhhhhhc
Confidence 9887765555543
No 76
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.83 E-value=0.0001 Score=100.13 Aligned_cols=143 Identities=22% Similarity=0.162 Sum_probs=92.8
Q ss_pred cCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhhccCCceEEEEecChhHH
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFIDVSLMSTLQYVGSAQDR 1541 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R 1541 (1806)
.+.+|++-|-.|.|||++++-+...+... .....+++|+- .-|-.|-.++|..|.... ....-..+..+.
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~--~~~~~~~s~~~L 342 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLEL-------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVA--FNDPKAESTSEL 342 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhc-------cCCCeEEEEechHHHHHHHHHHHHHHHHhh--hhcccccCHHHH
Confidence 34579999999999999987776654443 22356777777 447799999999997322 111122233332
Q ss_pred HHHHhhhcCCcEEEeeHHHHHhhHhh----hccccceEEEEcccccccChhhHHHHHHH-HhhhcceEEeccCCCCCChh
Q 000237 1542 IALREQFDKHNVIITSYDVVRKDADY----LGQLLWNYCILDEGHIIKNSKSKITVAVK-QLKAAHRLILSGTPIQNNIT 1616 (1806)
Q Consensus 1542 ~~l~~~l~~~dVVITSYe~Lr~di~~----L~~i~w~~VILDEaH~IKN~~Sk~skalk-~L~A~~RLlLTGTPIqNnl~ 1616 (1806)
....+.. ...|+|||-+.|...... ......-.||+||||+--.+.. .+.++ .++.-.-++.||||+...-.
T Consensus 343 k~~l~~~-~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~--~~~~~~~~~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 343 KELLEDG-KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGEL--AKLLKKALKKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHHhcC-CCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHH--HHHHHHHhccceEEEeeCCccccccc
Confidence 2222222 458999999999876533 2345577899999998644332 22323 33446678899999976544
Q ss_pred h
Q 000237 1617 D 1617 (1806)
Q Consensus 1617 E 1617 (1806)
.
T Consensus 420 ~ 420 (962)
T COG0610 420 D 420 (962)
T ss_pred c
Confidence 3
No 77
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.71 E-value=0.00027 Score=75.73 Aligned_cols=126 Identities=18% Similarity=0.237 Sum_probs=73.7
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEEEEecChhHHHHHHhh
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQ 1547 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~ 1547 (1806)
+|---+|.|||...+--+......++ +++||+.|.-.+. +|+.+++ ....+. |......+ ..
T Consensus 8 ~~d~hpGaGKTr~vlp~~~~~~i~~~--------~rvLvL~PTRvva---~em~~aL--~~~~~~-~~t~~~~~----~~ 69 (148)
T PF07652_consen 8 VLDLHPGAGKTRRVLPEIVREAIKRR--------LRVLVLAPTRVVA---EEMYEAL--KGLPVR-FHTNARMR----TH 69 (148)
T ss_dssp EEE--TTSSTTTTHHHHHHHHHHHTT----------EEEEESSHHHH---HHHHHHT--TTSSEE-EESTTSS-------
T ss_pred EEecCCCCCCcccccHHHHHHHHHcc--------CeEEEecccHHHH---HHHHHHH--hcCCcc-cCceeeec----cc
Confidence 67778999999988776654333332 6899999987663 5666666 333322 22222211 23
Q ss_pred hcCCcEEEeeHHHHHhhH-hhhccccceEEEEcccccccChhhHHHHHH-HHhh-h--cceEEeccCCCC
Q 000237 1548 FDKHNVIITSYDVVRKDA-DYLGQLLWNYCILDEGHIIKNSKSKITVAV-KQLK-A--AHRLILSGTPIQ 1612 (1806)
Q Consensus 1548 l~~~dVVITSYe~Lr~di-~~L~~i~w~~VILDEaH~IKN~~Sk~skal-k~L~-A--~~RLlLTGTPIq 1612 (1806)
.+..-|-+++|.++.... ......+|+++|+||||.. ++.|-..... ..+. . ...+.+|+||--
T Consensus 70 ~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred cCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 467789999999987643 2333457999999999984 5666555432 2331 2 246889999954
No 78
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.57 E-value=0.00048 Score=90.41 Aligned_cols=163 Identities=14% Similarity=0.084 Sum_probs=95.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHh-------HHHhhhcCCccCCCcEEEEecc-ccH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASD-------IAERRASNSIEEIHPSLIICPS-TLV 1513 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l-------~~~r~~~~~~~~~~ptLIVcP~-SLl 1513 (1806)
.+..|++.|.+.=+-+......+...|+.-++|.|||.|.=-++... ....+.. ......+++|++|. .++
T Consensus 157 ~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-~~~~~~~ilvt~PrreLa 235 (675)
T PHA02653 157 SKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-PNFIERPIVLSLPRVALV 235 (675)
T ss_pred ccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-cccCCcEEEEECcHHHHH
Confidence 35678887777666655566677788999999999998853332210 0000000 01112589999994 477
Q ss_pred HHHHHHHHHhhcc---CCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhH
Q 000237 1514 GHWAFEIEKFIDV---SLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSK 1590 (1806)
Q Consensus 1514 ~qW~~Ei~kf~~~---p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk 1590 (1806)
.|...++.+..+. ....+.+..|...... ........+++|.|..... .. -..+.++|+||+|..-.....
T Consensus 236 ~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~-~~t~~k~~~Ilv~T~~L~l---~~--L~~v~~VVIDEaHEr~~~~Dl 309 (675)
T PHA02653 236 RLHSITLLKSLGFDEIDGSPISLKYGSIPDEL-INTNPKPYGLVFSTHKLTL---NK--LFDYGTVIIDEVHEHDQIGDI 309 (675)
T ss_pred HHHHHHHHHHhCccccCCceEEEEECCcchHH-hhcccCCCCEEEEeCcccc---cc--cccCCEEEccccccCccchhH
Confidence 8888888876643 2344555455443211 0112235688888743211 11 234789999999997544433
Q ss_pred HHHHHHHhh-h-cceEEeccCCC
Q 000237 1591 ITVAVKQLK-A-AHRLILSGTPI 1611 (1806)
Q Consensus 1591 ~skalk~L~-A-~~RLlLTGTPI 1611 (1806)
....++.+. . +..+++|||.-
T Consensus 310 lL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 310 IIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred HHHHHHHhhhhcCEEEEEccCCc
Confidence 333343332 2 24688999984
No 79
>PRK14701 reverse gyrase; Provisional
Probab=97.57 E-value=0.00039 Score=98.39 Aligned_cols=128 Identities=14% Similarity=0.211 Sum_probs=88.2
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
++++.|+.++..+. .+...++.-.+|.|||+..+ +++ ...... ...+|||+| ..|+.|..+.+.++
T Consensus 79 ~pt~iQ~~~i~~il----~G~d~li~APTGsGKTl~~~-~~a-l~~~~~-------g~~aLVl~PTreLa~Qi~~~l~~l 145 (1638)
T PRK14701 79 EFWSIQKTWAKRIL----RGKSFSIVAPTGMGKSTFGA-FIA-LFLALK-------GKKCYIILPTTLLVKQTVEKIESF 145 (1638)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEEcCCCCHHHHHH-HHH-HHHHhc-------CCeEEEEECHHHHHHHHHHHHHHH
Confidence 58999999997654 34566888999999998322 222 211111 147999999 55889999999998
Q ss_pred hccC--CceEEEEecChhHH--HHHHhhh--cCCcEEEeeHHHHHhhHhhhccccceEEEEccccccc
Q 000237 1524 IDVS--LMSTLQYVGSAQDR--IALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIK 1585 (1806)
Q Consensus 1524 ~~~p--~l~vliy~Gs~~~R--~~l~~~l--~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IK 1585 (1806)
+... ..++..++|+.... ......+ +.++|+|+|.+.+......+....++++|+||||.+-
T Consensus 146 ~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 146 CEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecc
Confidence 7422 34566677764322 2222222 3589999999988766555544679999999999873
No 80
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.56 E-value=0.00044 Score=91.73 Aligned_cols=155 Identities=15% Similarity=0.080 Sum_probs=92.7
Q ss_pred cchHHHHHHHHHHHHhhcCC-ceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEE-Eec-cccHHHHHHHHHH
Q 000237 1446 LRRYQQEGINWLAFLKRFKL-HGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLI-ICP-STLVGHWAFEIEK 1522 (1806)
Q Consensus 1446 LRpYQ~eGV~wL~~l~~~~~-gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLI-VcP-~SLl~qW~~Ei~k 1522 (1806)
++|||.+.+.-+. .|. .-++.-.+|.|||....+++..... . ......|| +|| ..|+.|=.+++.+
T Consensus 16 PtpiQ~~~i~~il----~G~~~v~~~apTGSGKTaa~aafll~~~~------~-~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 16 PFPWQLSLAERFV----AGQPPESCSTPTGLGKTSIIAAWLLAVEI------G-AKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred CCHHHHHHHHHHH----cCCCcceEecCCCCcccHHHHHhhccccc------c-ccccceEEEeCchHHHHHHHHHHHHH
Confidence 8999999997643 333 2455689999999754433332210 1 11123455 668 5588899999888
Q ss_pred hhccC-----------------------CceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh--------hc--
Q 000237 1523 FIDVS-----------------------LMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY--------LG-- 1569 (1806)
Q Consensus 1523 f~~~p-----------------------~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~--------L~-- 1569 (1806)
+...- .+++..+.|...........-...+|||.|.+.+.+..-+ ..
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi 164 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPL 164 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccc
Confidence 87311 3666666776544334443435678999999888653210 00
Q ss_pred ----cccceEEEEcccccccChhhHHHHHHHH-h--hh----cceEEeccCCCC
Q 000237 1570 ----QLLWNYCILDEGHIIKNSKSKITVAVKQ-L--KA----AHRLILSGTPIQ 1612 (1806)
Q Consensus 1570 ----~i~w~~VILDEaH~IKN~~Sk~skalk~-L--~A----~~RLlLTGTPIq 1612 (1806)
-.+-.++|+||+| +...-......+.. + .. ...+++|+|+-.
T Consensus 165 ~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ 217 (844)
T TIGR02621 165 HAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRT 217 (844)
T ss_pred hhhhhccceEEEEehhh-hccccHHHHHHHHHhcccCcccccceEEEEecCCCc
Confidence 1225789999999 43333333333333 2 11 257899999843
No 81
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=97.47 E-value=0.00066 Score=94.78 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=86.6
Q ss_pred EcCCCCchHHHHHH-HHHHhHHHhhhc---CCccCCCcEEEEec-cccHHHHHHHHHH-----------hh-ccCCceEE
Q 000237 1470 CDDMGLGKTLQASA-IVASDIAERRAS---NSIEEIHPSLIICP-STLVGHWAFEIEK-----------FI-DVSLMSTL 1532 (1806)
Q Consensus 1470 ADdMGLGKTlqaIa-lia~l~~~r~~~---~~~~~~~ptLIVcP-~SLl~qW~~Ei~k-----------f~-~~p~l~vl 1532 (1806)
+-.+|.|||+.+.- ++..+....... ........+|+|+| +.|..+=.+++++ +. ....+++.
T Consensus 2 ~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~ 81 (1490)
T PRK09751 2 IAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVG 81 (1490)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEE
Confidence 45799999998855 444433221000 00011257999999 5565554444432 11 12467888
Q ss_pred EEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHh-----hhccccceEEEEcccccccCh--hhHHHHHHHHhh-----h
Q 000237 1533 QYVGSAQDRIALREQFDKHNVIITSYDVVRKDAD-----YLGQLLWNYCILDEGHIIKNS--KSKITVAVKQLK-----A 1600 (1806)
Q Consensus 1533 iy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~-----~L~~i~w~~VILDEaH~IKN~--~Sk~skalk~L~-----A 1600 (1806)
+++|......+....-...+|+|||++.+-..+. .+ .+..+||+||+|.+.+. .+.....+.+|. .
T Consensus 82 vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L--~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 82 IRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETL--RGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhh--ccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCC
Confidence 8998764433222222467999999998864322 22 23579999999999754 234444444442 2
Q ss_pred cceEEeccCCCCCChhhHHh
Q 000237 1601 AHRLILSGTPIQNNITDLWS 1620 (1806)
Q Consensus 1601 ~~RLlLTGTPIqNnl~ELwS 1620 (1806)
..+|+||+|- +++.++-.
T Consensus 160 ~QrIgLSATI--~n~eevA~ 177 (1490)
T PRK09751 160 AQRIGLSATV--RSASDVAA 177 (1490)
T ss_pred CeEEEEEeeC--CCHHHHHH
Confidence 4589999997 34555543
No 82
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.0012 Score=86.94 Aligned_cols=128 Identities=22% Similarity=0.304 Sum_probs=93.7
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEK 1522 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~k 1522 (1806)
..++..|+- |...+.+...-.|+| .+|+|||.-.+...+.+...+ ++++||+|.+ |+.|=.+.+++
T Consensus 81 ~~~ws~QR~---WakR~~rg~SFaiiA-PTGvGKTTfg~~~sl~~a~kg---------kr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 81 FRPWSAQRV---WAKRLVRGKSFAIIA-PTGVGKTTFGLLMSLYLAKKG---------KRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred CCchHHHHH---HHHHHHcCCceEEEc-CCCCchhHHHHHHHHHHHhcC---------CeEEEEecCHHHHHHHHHHHHH
Confidence 477888876 444444433345665 999999976655554433321 6899999955 77999999999
Q ss_pred hhccCC-ceEEE-EecC--hhHHHHHHhhh--cCCcEEEeeHHHHHhhHhhhccccceEEEEcccccc
Q 000237 1523 FIDVSL-MSTLQ-YVGS--AQDRIALREQF--DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHII 1584 (1806)
Q Consensus 1523 f~~~p~-l~vli-y~Gs--~~~R~~l~~~l--~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~I 1584 (1806)
|..... +.+.+ ||+. .+++....+++ +++||+|||-..+.+..+.|.+.+|++|++|.+..+
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 984332 33333 8886 45555566665 469999999999999999999999999999998865
No 83
>PRK09694 helicase Cas3; Provisional
Probab=97.39 E-value=0.0015 Score=87.99 Aligned_cols=164 Identities=16% Similarity=0.052 Sum_probs=94.5
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEK 1522 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~k 1522 (1806)
.++||+|+...+- ...++-.||-..||.|||-.++.++..+...+. ...+++..|.. +..+-.+++.+
T Consensus 285 ~~p~p~Q~~~~~~----~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-------~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 285 YQPRQLQTLVDAL----PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-------ADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCChHHHHHHHhh----ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-------CCeEEEECcHHHHHHHHHHHHHH
Confidence 4789999976421 223334589999999999998887665443221 25788888955 55666666665
Q ss_pred hhcc--CCceEEEEecChhHHHH--------------------HHhhhc-------CCcEEEeeHHHHHhhH-----hhh
Q 000237 1523 FIDV--SLMSTLQYVGSAQDRIA--------------------LREQFD-------KHNVIITSYDVVRKDA-----DYL 1568 (1806)
Q Consensus 1523 f~~~--p~l~vliy~Gs~~~R~~--------------------l~~~l~-------~~dVVITSYe~Lr~di-----~~L 1568 (1806)
|+.. +..++...+|....... ...++. -.+|+|+|.+.+-.-. ..+
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~l 433 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFI 433 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHH
Confidence 4310 23345555654321000 001221 2689999998775321 111
Q ss_pred c--cccceEEEEcccccccChhhHH-HHHHHHhh--hcceEEeccCCCCCChhhH
Q 000237 1569 G--QLLWNYCILDEGHIIKNSKSKI-TVAVKQLK--AAHRLILSGTPIQNNITDL 1618 (1806)
Q Consensus 1569 ~--~i~w~~VILDEaH~IKN~~Sk~-skalk~L~--A~~RLlLTGTPIqNnl~EL 1618 (1806)
+ ...-.+||+||+|.+-...+.. ...++.+. ....++||||+-..--.+|
T Consensus 434 R~~~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L 488 (878)
T PRK09694 434 RGFGLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKL 488 (878)
T ss_pred HHHhhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHH
Confidence 1 2223589999999984433333 23333332 2457999999854433333
No 84
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.1 Score=66.75 Aligned_cols=319 Identities=19% Similarity=0.271 Sum_probs=188.8
Q ss_pred HhHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchhhHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhcCc
Q 000237 587 HGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQE 666 (1806)
Q Consensus 587 ~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~~l~~il~~LWd~L~~lDDLs~St~svM~LLa~l~s~~ 666 (1806)
++.+++|-.-|+.||.|++-=+|++.--..+-|++.= .-+.-+.++-.|-.+| +.-|..--- .-|+-|.|+|...
T Consensus 85 ~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~---~~~~wpelLp~L~~~L-~s~d~n~~E-gA~~AL~KIcEDs 159 (885)
T KOG2023|consen 85 SEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTG---GLQHWPELLPQLCELL-DSPDYNTCE-GAFGALQKICEDS 159 (885)
T ss_pred hHHHHHHHHHHHhhccCchHHHHhhhhheeeeeeccc---ccccchhHHHHHHHHh-cCCcccccc-hhHHHHHHHHhhh
Confidence 5789999999999999999999998766555554321 1122344444444444 333332222 3477899998753
Q ss_pred -hhhHHhhccccccccccchhcccccCCCCCCCCCCchhhhcccccccccccccchhhHHHHHHHHHHHHHhcccccccc
Q 000237 667 -EMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAE 745 (1806)
Q Consensus 667 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~~~~~~~~~ 745 (1806)
+++ . .+....| +.-++||++-|++|.-...|.-|+.++..|+-+..+.
T Consensus 160 a~~l---d----------------------s~~~~rp--l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa---- 208 (885)
T KOG2023|consen 160 AQFL---D----------------------SDVLTRP--LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA---- 208 (885)
T ss_pred HHHH---h----------------------hhcccCc--hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH----
Confidence 222 1 1223568 9999999999999999999999999999998765431
Q ss_pred CCCCCCCchhchhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcCChhhH----HHhhhhhHH----------------H
Q 000237 746 SSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQSPVEDL----EAAGGKFMS----------------S 805 (1806)
Q Consensus 746 ~~~~~~W~~~i~~~~LR~vFQnlLlE~~~~I~~~s~~vW~~ll~~~~~~~----~~~~~~~~~----------------~ 805 (1806)
.. .=..++|-.+|+-. -..+++|++-..+...-|+...+..+ ..+. .|+- -
T Consensus 209 -----l~--~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~Iv-eyML~~tqd~dE~VALEACEF 279 (885)
T KOG2023|consen 209 -----LY--VHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIV-EYMLQRTQDVDENVALEACEF 279 (885)
T ss_pred -----HH--HHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHH-HHHHHHccCcchhHHHHHHHH
Confidence 11 12568899999988 89999999999988888886332111 1111 1111 1
Q ss_pred HHHHhhcCCCCCC-------------------CCCccccccCCCccc-hhhHH-HHHhhhhcccCCCCCCCCCCcccCCC
Q 000237 806 WIELATTPFGSSL-------------------DATKMFWPVALPRKS-HFKAA-AKMRAVKLENDSSGSVDLPQERNGDT 864 (1806)
Q Consensus 806 wl~L~mtP~g~~~-------------------d~~~~~~p~~~~~~~-~~~~~-~k~~~~~~~~~~~~~~~~~~~~n~d~ 864 (1806)
|+.++.+|+-... |...++.-+.---.+ +++.. -|.|=.|++ .++.....-+-|.
T Consensus 280 wla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk----~~~~~~~~~~eDd 355 (885)
T KOG2023|consen 280 WLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSK----EHGNGEDADDEDD 355 (885)
T ss_pred HHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhch----hccCccccccccc
Confidence 9999999854322 111111100000000 00000 000000000 0000000001111
Q ss_pred CCCcceeecCCcchh-hhhhHHHHHHHHHHHHHhhhccchhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHhhccccCCC
Q 000237 865 STNSVKITVGSDLEM-SVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELP 943 (1806)
Q Consensus 865 ~~~~~~~~~ggd~~l-v~~~tRi~aA~alG~l~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvi~ewa~~~~~~~~~ 943 (1806)
- ...+ .|-|. ...+-|=-.|.||+.+...|+...+..++.+|-..|.+.-=..|-.+-+.+-.-|.-+-..
T Consensus 356 d--dDe~---DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g--- 427 (885)
T KOG2023|consen 356 D--DDED---DDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG--- 427 (885)
T ss_pred c--cccc---ccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh---
Confidence 1 0001 11122 2266666667899999999999999999898989999988888888888777777643211
Q ss_pred CccCCCCCCCcchhHHHHHHHhccCCC
Q 000237 944 GSAAVLPNLPGHLKQWLLDLLACSDPT 970 (1806)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ 970 (1806)
..| ++..+..-|.+||+.-
T Consensus 428 ----~~p----~LpeLip~l~~~L~DK 446 (885)
T KOG2023|consen 428 ----FVP----HLPELIPFLLSLLDDK 446 (885)
T ss_pred ----ccc----chHHHHHHHHHHhccC
Confidence 222 3335666677777654
No 85
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.38 E-value=0.00034 Score=70.65 Aligned_cols=93 Identities=23% Similarity=0.319 Sum_probs=71.0
Q ss_pred eecccccchhhh-hhhhhhhHHhHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchhhHHHHHHHHHHhhcCC
Q 000237 567 IRHGSLLGIKYL-VAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDL 645 (1806)
Q Consensus 567 vrHGgLLGiKYl-vAVR~dll~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~~l~~il~~LWd~L~~l 645 (1806)
.|+|||+||... ++..++ +...++.++|.++.++.|+|.-||-.|..+|..++...-..--..++.|...||.++
T Consensus 2 ~R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~--- 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLS--- 77 (97)
T ss_pred chhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 599999999999 676776 688999999999999999999999999999999987664333334455555555555
Q ss_pred CCCCcchHHHHHHHHHHh
Q 000237 646 DDLSPSTSSVMNLLAEIY 663 (1806)
Q Consensus 646 DDLs~St~svM~LLa~l~ 663 (1806)
.|.-.++-+-..+|-.|.
T Consensus 78 ~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 78 ADPDENVRSAAELLDRLL 95 (97)
T ss_pred cCCchhHHHHHHHHHHHh
Confidence 555555666666666554
No 86
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.34 E-value=0.0011 Score=83.57 Aligned_cols=146 Identities=19% Similarity=0.156 Sum_probs=95.7
Q ss_pred cCCceEEEcCCCCchHHHHH-HHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHhhccCCceEEEEecChhH
Q 000237 1463 FKLHGILCDDMGLGKTLQAS-AIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKFIDVSLMSTLQYVGSAQD 1540 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaI-alia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf~~~p~l~vliy~Gs~~~ 1540 (1806)
.+..+|...++|.|||+-=+ -++..+... .......+...+||++|.- |..|-..++.+|.....++...++|....
T Consensus 127 ~GrD~v~iA~TGSGKTLay~lP~i~~l~~~-~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~ 205 (519)
T KOG0331|consen 127 SGRDLVGIARTGSGKTLAYLLPAIVHLNNE-QGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPK 205 (519)
T ss_pred cCCceEEEeccCCcchhhhhhHHHHHHHhc-cccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCc
Confidence 44667888999999997431 122222221 1111122224589999955 88999999999996555645554554444
Q ss_pred HHHHHhhhcCCcEEEeeHHHHHhhHhh--hccccceEEEEcccccccC--hhhHHHHHHHHh-hhcc-eEEeccC
Q 000237 1541 RIALREQFDKHNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKN--SKSKITVAVKQL-KAAH-RLILSGT 1609 (1806)
Q Consensus 1541 R~~l~~~l~~~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN--~~Sk~skalk~L-~A~~-RLlLTGT 1609 (1806)
....+..-...+|+|+|-..+...++. +.-....|+||||+.++-. ...++-+.+.++ +... .++-|+|
T Consensus 206 ~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saT 280 (519)
T KOG0331|consen 206 GPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSAT 280 (519)
T ss_pred cHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeee
Confidence 444455556789999999988765543 2233578999999999843 566777777788 4443 5666666
No 87
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.33 E-value=0.00072 Score=83.18 Aligned_cols=140 Identities=12% Similarity=0.054 Sum_probs=99.2
Q ss_pred ccccchHHHHHHHHHHHHhhc-----CCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRF-----KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHW 1516 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~-----~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW 1516 (1806)
-..++|-|...+-|+.+-.+. ++.-+++..+|.|||+.-.-=|......|. -++.+.+||+| ..|+.|-
T Consensus 157 is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-----v~~LRavVivPtr~L~~QV 231 (620)
T KOG0350|consen 157 ISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-----VKRLRAVVIVPTRELALQV 231 (620)
T ss_pred cccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-----ccceEEEEEeeHHHHHHHH
Confidence 357899999999999765542 223488899999999854222333333221 23478999999 5588999
Q ss_pred HHHHHHhhccCCceEEEEecChhHHHHHHhhh-----cCCcEEEeeHHHHHhhHhhhcc---ccceEEEEcccccccCh
Q 000237 1517 AFEIEKFIDVSLMSTLQYVGSAQDRIALREQF-----DKHNVIITSYDVVRKDADYLGQ---LLWNYCILDEGHIIKNS 1587 (1806)
Q Consensus 1517 ~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l-----~~~dVVITSYe~Lr~di~~L~~---i~w~~VILDEaH~IKN~ 1587 (1806)
..+|.+|.+...+.|....|...-+.....-. .+.||+|+|-..+...+..-.. -+..|+|+||+.++-+.
T Consensus 232 ~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~q 310 (620)
T KOG0350|consen 232 YDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQ 310 (620)
T ss_pred HHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHH
Confidence 99999999888999988888775443333221 2458999999988765543222 23679999999998653
No 88
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.32 E-value=0.0011 Score=87.22 Aligned_cols=172 Identities=19% Similarity=0.223 Sum_probs=104.4
Q ss_pred hhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCC-ccCCCcEEEEec-cccHHHHHHHHHHhhccCCceEEEEecCh
Q 000237 1461 KRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNS-IEEIHPSLIICP-STLVGHWAFEIEKFIDVSLMSTLQYVGSA 1538 (1806)
Q Consensus 1461 ~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~-~~~~~ptLIVcP-~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~ 1538 (1806)
++.+.+.|+|..+|.|||..+.--|............ ..+.-+++-|+| ++|...-.+.+.+-+..-.+++..++|..
T Consensus 123 Y~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ 202 (1230)
T KOG0952|consen 123 YKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDT 202 (1230)
T ss_pred hcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcc
Confidence 4556778999999999999886555554443221111 122367899999 67776555555554433368899999976
Q ss_pred hHHHHHHhhhcCCcEEEeeHHHH----HhhHhhh-ccccceEEEEcccccccChhhHHHH-----HHHHh----hhcceE
Q 000237 1539 QDRIALREQFDKHNVIITSYDVV----RKDADYL-GQLLWNYCILDEGHIIKNSKSKITV-----AVKQL----KAAHRL 1604 (1806)
Q Consensus 1539 ~~R~~l~~~l~~~dVVITSYe~L----r~di~~L-~~i~w~~VILDEaH~IKN~~Sk~sk-----alk~L----~A~~RL 1604 (1806)
.--. ..+.+.+|+|||-+.+ |+..... ..-...+||+||.|.+..+.-.... .++.. ..-+.+
T Consensus 203 ql~~---tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRiv 279 (1230)
T KOG0952|consen 203 QLTK---TEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIV 279 (1230)
T ss_pred hhhH---HHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEE
Confidence 4322 2367889999998765 2221111 1122578999999999876544333 23222 233457
Q ss_pred EeccCCCCCChhhHHhhhhhhCCCCCCchhHHHHHh
Q 000237 1605 ILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATY 1640 (1806)
Q Consensus 1605 lLTGTPIqNnl~ELwSLL~FL~Pg~Lgt~~~F~~~f 1640 (1806)
+||||-- |..| +-.||.-.+...--.|...|
T Consensus 280 gLSATlP--N~eD---vA~fL~vn~~~glfsFd~~y 310 (1230)
T KOG0952|consen 280 GLSATLP--NYED---VARFLRVNPYAGLFSFDQRY 310 (1230)
T ss_pred EeeccCC--CHHH---HHHHhcCCCccceeeecccc
Confidence 7999942 3333 45567655433344455555
No 89
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.32 E-value=0.0013 Score=79.09 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=113.7
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHH-HHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQA-SAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEK 1522 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqa-Ialia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~k 1522 (1806)
.+-+-|.+++=.. -.+.++|-+.++|.|||..- |=++..+..+ +.....||++|.- |..|-.+.|+.
T Consensus 83 ~PT~IQ~~aiP~~----L~g~dvIglAeTGSGKT~afaLPIl~~LL~~-------p~~~~~lVLtPtRELA~QI~e~fe~ 151 (476)
T KOG0330|consen 83 KPTKIQSEAIPVA----LGGRDVIGLAETGSGKTGAFALPILQRLLQE-------PKLFFALVLTPTRELAQQIAEQFEA 151 (476)
T ss_pred CCchhhhhhcchh----hCCCcEEEEeccCCCchhhhHHHHHHHHHcC-------CCCceEEEecCcHHHHHHHHHHHHH
Confidence 3455688887443 25667899999999999753 2333333332 2225689999955 88899999999
Q ss_pred hhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhcc---ccceEEEEcccccccCh--hhHHHHHHHH
Q 000237 1523 FIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQ---LLWNYCILDEGHIIKNS--KSKITVAVKQ 1597 (1806)
Q Consensus 1523 f~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~---i~w~~VILDEaH~IKN~--~Sk~skalk~ 1597 (1806)
+...-.+++.++.|.............+.+|+|+|...+....+.-.. -...++|+|||.++-|. .-...+.++.
T Consensus 152 Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ 231 (476)
T KOG0330|consen 152 LGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKV 231 (476)
T ss_pred hccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHh
Confidence 987788999999998877666666778889999999999876653222 23578999999999874 3456677788
Q ss_pred hhhcce-EEeccCCCC
Q 000237 1598 LKAAHR-LILSGTPIQ 1612 (1806)
Q Consensus 1598 L~A~~R-LlLTGTPIq 1612 (1806)
+...++ ++.|+|-..
T Consensus 232 ip~erqt~LfsATMt~ 247 (476)
T KOG0330|consen 232 IPRERQTFLFSATMTK 247 (476)
T ss_pred cCccceEEEEEeecch
Confidence 866554 667887543
No 90
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.30 E-value=0.0026 Score=76.08 Aligned_cols=44 Identities=25% Similarity=0.090 Sum_probs=37.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASD 1488 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l 1488 (1806)
+.||.|.+-.+-+......+.++++--.+|.|||+..++.+...
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~ 51 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTW 51 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHH
Confidence 45999999888888777888889999999999999988777543
No 91
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.30 E-value=0.0026 Score=76.08 Aligned_cols=44 Identities=25% Similarity=0.090 Sum_probs=37.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASD 1488 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l 1488 (1806)
+.||.|.+-.+-+......+.++++--.+|.|||+..++.+...
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~ 51 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTW 51 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHH
Confidence 45999999888888777888889999999999999988777543
No 92
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.27 E-value=0.0026 Score=85.33 Aligned_cols=167 Identities=16% Similarity=0.152 Sum_probs=101.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHH---------HHHHhhccCCceEEEEe
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAF---------EIEKFIDVSLMSTLQYV 1535 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~---------Ei~kf~~~p~l~vliy~ 1535 (1806)
+--+..++|.|||.+++..|..+....+ ...+|||||.. +.....+ .|....+...+...+|.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~-------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYG-------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcC-------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 4467789999999999999988765432 26899999964 3333322 23332333446666776
Q ss_pred cCh---hHH----HHHHhhhc-------CCcEEEeeHHHHHhhH------hhh--cc--ccc-------eEEEEcccccc
Q 000237 1536 GSA---QDR----IALREQFD-------KHNVIITSYDVVRKDA------DYL--GQ--LLW-------NYCILDEGHII 1584 (1806)
Q Consensus 1536 Gs~---~~R----~~l~~~l~-------~~dVVITSYe~Lr~di------~~L--~~--i~w-------~~VILDEaH~I 1584 (1806)
... ..| ..++.-.. .-.|.|+|.+.+.++. +.+ .. ..| -.||+||.|++
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 442 111 11111111 2479999999886531 111 11 122 46999999999
Q ss_pred cChhhHHHHHHHHhhhcceEEeccCCCC-------CC--hhhHHhhhhhhCCCCCCchhHHHHHhccchh
Q 000237 1585 KNSKSKITVAVKQLKAAHRLILSGTPIQ-------NN--ITDLWSLFDFLMPGFLGTERQFQATYGKPLV 1645 (1806)
Q Consensus 1585 KN~~Sk~skalk~L~A~~RLlLTGTPIq-------Nn--l~ELwSLL~FL~Pg~Lgt~~~F~~~f~kPi~ 1645 (1806)
.. ..+.++++..++..+.+-.|||--. |. ..++++++.-| +..+.|+....+-|.
T Consensus 214 ~~-~~k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~L-----davdAyn~~LVK~I~ 277 (986)
T PRK15483 214 PR-DNKFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFDL-----NAVDSFNDGLVKGVD 277 (986)
T ss_pred Cc-chHHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceeec-----CHHHHHHhCCcceEE
Confidence 65 2446688999999999999999754 11 22355555433 445666666655444
No 93
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.25 E-value=0.00077 Score=76.96 Aligned_cols=139 Identities=20% Similarity=0.300 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHHhhccCChhhhHHHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHH-HHHhhcccCCcc
Q 000237 1260 PQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAV-VENAIPMLGDMT 1338 (1806)
Q Consensus 1260 ~q~lid~l~vl~~~~p~~~~~l~~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~-~~~~~p~l~~~~ 1338 (1806)
.+-...+++++..++..+...+.+.+..++|.++..+.+...+||.+|..|+.+|+...+ ....+ ...+.+... ..
T Consensus 67 s~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~-~K 143 (228)
T PF12348_consen 67 SKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLK-SK 143 (228)
T ss_dssp --HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT--S
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHh-CC
Confidence 456778899999999999999999999999999999999999999999999999999877 11222 334444444 44
Q ss_pred chhhccchhHHHHHHHhhcC--CcccCCcc---hhhhhhhhccccCCchhhhhhhhhhhhcccccccc
Q 000237 1339 SVHARQGAGMLISLLVQGLG--AELVPYAP---LLVVPLLRCMSDCDQSVRQSVTRSFASLVPLLPLA 1401 (1806)
Q Consensus 1339 ~~~~r~ga~~~~~~~~~~~~--~~~~py~~---~l~~pll~~msd~~~~vr~~~~~~fa~lv~l~pl~ 1401 (1806)
+...|.++.+.+..++...+ ...+.... -++..+...++|.++.||..+..+|..+.+.+|-.
T Consensus 144 n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 144 NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 67889999999999999998 33343332 24444567899999999999999999998877644
No 94
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.08 E-value=0.0031 Score=85.73 Aligned_cols=70 Identities=16% Similarity=0.038 Sum_probs=48.6
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecc-ccHHHHHH-HHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS-TLVGHWAF-EIE 1521 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~-SLl~qW~~-Ei~ 1521 (1806)
.+.||+|.+.+..+......+..+++-..+|.|||+..+.-+..... . ..+++|.+|. .|-.||.. ++.
T Consensus 244 ~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--~-------~~~vvi~t~t~~Lq~Ql~~~~~~ 314 (850)
T TIGR01407 244 LEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--T-------EKPVVISTNTKVLQSQLLEKDIP 314 (850)
T ss_pred CccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--C-------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 35899999988777666666666777789999999876554433211 1 1589999995 46788855 444
Q ss_pred H
Q 000237 1522 K 1522 (1806)
Q Consensus 1522 k 1522 (1806)
.
T Consensus 315 ~ 315 (850)
T TIGR01407 315 L 315 (850)
T ss_pred H
Confidence 3
No 95
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=97.06 E-value=0.0045 Score=82.34 Aligned_cols=137 Identities=23% Similarity=0.225 Sum_probs=84.2
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHH---HHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVG---HWAFEI 1520 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~---qW~~Ei 1520 (1806)
.+|||+.+.+..+..+ .|-|..-.+|-|||+.+...+......+ ..++||+|.. |.. .|...+
T Consensus 76 g~~p~~vQl~~~~~l~----~G~Iaem~TGeGKTL~a~lp~~l~al~G---------~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 76 GMRPYDVQLIGALVLH----EGNIAEMQTGEGKTLTATMPLYLNALEG---------KGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred CCCCchHHHHhHHHHc----CCceeeecCCCcchHHHHHHHHHHHHcC---------CCeEEEeCCHHHHHHHHHHHHHH
Confidence 4566655555555332 2448889999999997754443222211 5799999966 444 466666
Q ss_pred HHhhccCCceEEEEecChh-HHHHHHhhhcCCcEEEeeH-----HHHHhhHh----hhccccceEEEEcccccccChhhH
Q 000237 1521 EKFIDVSLMSTLQYVGSAQ-DRIALREQFDKHNVIITSY-----DVVRKDAD----YLGQLLWNYCILDEGHIIKNSKSK 1590 (1806)
Q Consensus 1521 ~kf~~~p~l~vliy~Gs~~-~R~~l~~~l~~~dVVITSY-----e~Lr~di~----~L~~i~w~~VILDEaH~IKN~~Sk 1590 (1806)
.+|+ .+++..+.|... ... +.....++|+++|. +.++.... ......++++|+||++.+-=-
T Consensus 143 ~~~l---Gl~v~~i~g~~~~~~~--r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiD--- 214 (790)
T PRK09200 143 YEFL---GLTVGLNFSDIDDASE--KKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLD--- 214 (790)
T ss_pred Hhhc---CCeEEEEeCCCCcHHH--HHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceec---
Confidence 6664 578877776543 221 12234689999994 44454321 223356899999999987311
Q ss_pred HHHHHHHhhhcceEEeccCC
Q 000237 1591 ITVAVKQLKAAHRLILSGTP 1610 (1806)
Q Consensus 1591 ~skalk~L~A~~RLlLTGTP 1610 (1806)
.++.-+++||.+
T Consensus 215 --------ea~tpliisg~~ 226 (790)
T PRK09200 215 --------EAQTPLIISGKP 226 (790)
T ss_pred --------cCCCceeeeCCC
Confidence 244557888755
No 96
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.0077 Score=71.81 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=102.6
Q ss_pred ccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHH
Q 000237 1441 ELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFE 1519 (1806)
Q Consensus 1441 ~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~E 1519 (1806)
...++|-|+|+.+-+-+....+....-|+-.-.|.|||-+....+......+ +.+.|..|.. ++-.-...
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---------~~vciASPRvDVclEl~~R 163 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---------GRVCIASPRVDVCLELYPR 163 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC---------CeEEEecCcccchHHHHHH
Confidence 4678999999999999988888888889999999999998887777655432 5788888844 66666666
Q ss_pred HHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccC-hhhHHHHHHHHh
Q 000237 1520 IEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKN-SKSKITVAVKQL 1598 (1806)
Q Consensus 1520 i~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN-~~Sk~skalk~L 1598 (1806)
++.-+ +...+...+|.... .+...-||-||++.+|-. ..||.+|+||...+-= .+-.+..|+++-
T Consensus 164 lk~aF--~~~~I~~Lyg~S~~------~fr~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~a 229 (441)
T COG4098 164 LKQAF--SNCDIDLLYGDSDS------YFRAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKA 229 (441)
T ss_pred HHHhh--ccCCeeeEecCCch------hccccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHh
Confidence 66666 44445555555432 223334666677776642 3589999999987621 222334445444
Q ss_pred -h-hcceEEeccCCCC
Q 000237 1599 -K-AAHRLILSGTPIQ 1612 (1806)
Q Consensus 1599 -~-A~~RLlLTGTPIq 1612 (1806)
+ -..++.||+||-.
T Consensus 230 rk~~g~~IylTATp~k 245 (441)
T COG4098 230 RKKEGATIYLTATPTK 245 (441)
T ss_pred hcccCceEEEecCChH
Confidence 2 3457899999973
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.0025 Score=85.69 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=103.8
Q ss_pred ccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHH
Q 000237 1441 ELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFE 1519 (1806)
Q Consensus 1441 ~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~E 1519 (1806)
.+..+|-++|++++.-+ ..+.+.++|..+|.|||+.+-..++.....+ .++.-..| +.|..|=.++
T Consensus 115 ~~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~---------qrviYTsPIKALsNQKyrd 181 (1041)
T COG4581 115 EYPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDG---------QRVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred hCCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcC---------CceEeccchhhhhhhHHHH
Confidence 35678999999999765 4566789999999999999988877654432 35888889 7888888888
Q ss_pred HHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh--hccccceEEEEcccccccChhhHHHHHHH-
Q 000237 1520 IEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKNSKSKITVAVK- 1596 (1806)
Q Consensus 1520 i~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN~~Sk~skalk- 1596 (1806)
|..-++.-.-.+..++|... --+.+.++++|-+.+|+.... .....-..||+||.|+|.........--.
T Consensus 182 l~~~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I 254 (1041)
T COG4581 182 LLAKFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVI 254 (1041)
T ss_pred HHHHhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHH
Confidence 77665311112344555532 225678888888999986522 11233567999999999876554443333
Q ss_pred -Hh-hhcceEEeccCC
Q 000237 1597 -QL-KAAHRLILSGTP 1610 (1806)
Q Consensus 1597 -~L-~A~~RLlLTGTP 1610 (1806)
.+ +.-.-++||+|=
T Consensus 255 i~lP~~v~~v~LSATv 270 (1041)
T COG4581 255 ILLPDHVRFVFLSATV 270 (1041)
T ss_pred HhcCCCCcEEEEeCCC
Confidence 33 233568899984
No 98
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.98 E-value=0.00034 Score=62.64 Aligned_cols=52 Identities=37% Similarity=0.360 Sum_probs=48.7
Q ss_pred eeeecccccchhhhhhhhhhhHHhHHhhHHHHHHccCCCCCchHHHhHHhhh
Q 000237 565 WEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADAL 616 (1806)
Q Consensus 565 WEvrHGgLLGiKYlvAVR~dll~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L 616 (1806)
|+||++++.+|-++.....+.+..+++.++|.++..|.|++++||.-|+-+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aL 52 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWAL 52 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8999999999999888888888889999999999999999999999999887
No 99
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.86 E-value=0.00076 Score=89.47 Aligned_cols=73 Identities=12% Similarity=-0.084 Sum_probs=58.4
Q ss_pred HHHHHhhcccCCcCCCccccchhhhHHHHHHHHhhc--CChhhHHHHHHHH----HhhccCCceeeecccccchhhhhhh
Q 000237 508 FLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKY--MHPSLVYETLYIL----LQMQRRPEWEIRHGSLLGIKYLVAV 581 (1806)
Q Consensus 508 lLCVlaLDRFGDyVSDqVVAPVRET~AQ~Lgall~~--m~~~~v~~~~~iL----l~~q~~~~WEvrHGgLLGiKYlvAV 581 (1806)
-+|.++||||++|--|++++|-++.+++.++++..+ ++-..+.++++.| +.+-+ -.|+.-|++.|+.+|.+..
T Consensus 204 ~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~ldd-l~~s~~si~~ll~~l~~~~ 282 (1549)
T KOG0392|consen 204 QLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDD-LSSSTASIMHLLDELCIEN 282 (1549)
T ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhh-cchhhHHHHHHHHHHhhhH
Confidence 789999999999999999999999988888888777 3333344444333 33333 7999999999999999987
No 100
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.85 E-value=0.011 Score=78.98 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=91.6
Q ss_pred cchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cH---HHHHHHHH
Q 000237 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LV---GHWAFEIE 1521 (1806)
Q Consensus 1446 LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll---~qW~~Ei~ 1521 (1806)
++|||...+.-+. .+.+-|....+|.|||+..+.-+......+ .+++||+|.. |. .+|...+.
T Consensus 93 ~tp~qvQ~I~~i~----l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g---------~~v~IVTpTrELA~Qdae~m~~L~ 159 (970)
T PRK12899 93 MVPYDVQILGAIA----MHKGFITEMQTGEGKTLTAVMPLYLNALTG---------KPVHLVTVNDYLAQRDCEWVGSVL 159 (970)
T ss_pred CChHHHHHhhhhh----cCCCeEEEeCCCCChHHHHHHHHHHHHhhc---------CCeEEEeCCHHHHHHHHHHHHHHH
Confidence 8999988886553 233456668999999998765544322111 3588999965 44 45777777
Q ss_pred HhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHH-----HhhHhhh-----ccccceEEEEcccccccChhhHH
Q 000237 1522 KFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVV-----RKDADYL-----GQLLWNYCILDEGHIIKNSKSKI 1591 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~L-----r~di~~L-----~~i~w~~VILDEaH~IKN~~Sk~ 1591 (1806)
+|+ .+++..+.|........ ... ..+|++.|-..+ +...-.+ -+..++++|+||+..+-
T Consensus 160 k~l---GLsV~~i~GG~~~~eq~-~~y-~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL------ 228 (970)
T PRK12899 160 RWL---GLTTGVLVSGSPLEKRK-EIY-QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL------ 228 (970)
T ss_pred hhc---CCeEEEEeCCCCHHHHH-HHc-CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh------
Confidence 775 46776665543322221 222 579999996655 3221111 12357899999998762
Q ss_pred HHHHHHhhhcceEEeccCCCCCChhhHHhhhh
Q 000237 1592 TVAVKQLKAAHRLILSGTPIQNNITDLWSLFD 1623 (1806)
Q Consensus 1592 skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~ 1623 (1806)
.=.|+.-+++||.+-.. .++|..++
T Consensus 229 -----iDEArTPLIISg~~~~~--~~~Y~~~~ 253 (970)
T PRK12899 229 -----IDEARTPLIISGPGEKH--NPVYFELK 253 (970)
T ss_pred -----hhccCCceeeeCCCccc--cHHHHHHh
Confidence 12466679999976433 55665554
No 101
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.85 E-value=0.009 Score=78.07 Aligned_cols=68 Identities=26% Similarity=0.197 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhh
Q 000237 1450 QQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFI 1524 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~ 1524 (1806)
|.+-..++......+...++-..+|.|||+..+.-+........ ..++||.+| ..|..|+.+++..+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~-------~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERP-------DQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhcc-------CceEEEECCcHHHHHHHHHHHHHHH
Confidence 67777777776666666778889999999876555443222111 168999999 457889999887765
No 102
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.78 E-value=0.0029 Score=78.90 Aligned_cols=138 Identities=17% Similarity=0.158 Sum_probs=96.4
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHH-HHHhHHHhhhcCCcc---CCCcEEEEeccc-cHHHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAI-VASDIAERRASNSIE---EIHPSLIICPST-LVGHWAFE 1519 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIal-ia~l~~~r~~~~~~~---~~~ptLIVcP~S-Ll~qW~~E 1519 (1806)
.+.|+|+.++.-+ ..+++.+.|..+|.|||.-=+-= +...+..+....... .....||++|.. |+.|=.+|
T Consensus 96 ~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 96 KPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred CCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 4568899888644 45666788999999999754322 223332222111111 124678999955 99999999
Q ss_pred HHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh--hccccceEEEEcccccccC
Q 000237 1520 IEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1520 i~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN 1586 (1806)
..+|.....++....+|....+...+..-..++|+++|-..+...++. +.--.-.|+|||||.++-.
T Consensus 172 a~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD 240 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLD 240 (482)
T ss_pred HHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhh
Confidence 999998888888888887777777777778999999999988755432 1122234999999998743
No 103
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=4.9 Score=55.25 Aligned_cols=611 Identities=19% Similarity=0.146 Sum_probs=315.4
Q ss_pred ccccchhhhHHHHHHHHhhcCChhhHHHHHHHHHhhccCCceeeecccccchhhhhhhhhhhHHhHHhhHHHHHHccCCC
Q 000237 524 QVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLED 603 (1806)
Q Consensus 524 qVVAPVRET~AQ~Lgall~~m~~~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKYlvAVR~dll~~lL~~Vl~a~~~GL~D 603 (1806)
...-.||=..|++.+.+.+..=++.--+.+..|.+=...+.=-.|-.+++=+.=+.-.+..-+.-.++.+++....|+.|
T Consensus 91 E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d 170 (1075)
T KOG2171|consen 91 ETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTD 170 (1075)
T ss_pred ccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccC
Confidence 44567888889999988888777655566666644444444455556665555555445555556889999999999999
Q ss_pred CCchHHHhHHhhhhhhHHHHH------hhchhhHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhcCchhhHHhhcccc
Q 000237 604 PDDDVRAVAADALIPTAAAIV------ALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMVGATS 677 (1806)
Q Consensus 604 ~DDDVraVAA~~L~Pia~~~v------~~~~~~l~~il~~LWd~L~~lDDLs~St~svM~LLa~l~s~~~v~~~~~~~~~ 677 (1806)
+++=||..|+-|++-++..+- ......|+++++++=+++.+-||=
T Consensus 171 ~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~----------------------------- 221 (1075)
T KOG2171|consen 171 PSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDD----------------------------- 221 (1075)
T ss_pred CcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchH-----------------------------
Confidence 999999999999988877662 222233444444433333333220
Q ss_pred ccccccchhcccccCCCCCCCCCCchhhhcccccccccccccchhhHHHHHHHHHHHHHhccccccccCCCCCCCchhch
Q 000237 678 KQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFIL 757 (1806)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~~~~~~~~~~~~~~~W~~~i~ 757 (1806)
+=.++++.|..|++.... ++
T Consensus 222 ---------------------------------------------~a~~~l~~l~El~e~~pk---------------~l 241 (1075)
T KOG2171|consen 222 ---------------------------------------------AAKSALEALIELLESEPK---------------LL 241 (1075)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHhhchH---------------HH
Confidence 112355555555544322 44
Q ss_pred hhHHHHHHHHHh-----ccchHHHHHHHHHHHHHHhcCChhhHHH---hhhhhHHHHHHHhhcCCCCCCCCCccccccCC
Q 000237 758 GDTLRIVFQNLL-----LESNEEILQCSDRVWRLLVQSPVEDLEA---AGGKFMSSWIELATTPFGSSLDATKMFWPVAL 829 (1806)
Q Consensus 758 ~~~LR~vFQnlL-----lE~~~~I~~~s~~vW~~ll~~~~~~~~~---~~~~~~~~wl~L~mtP~g~~~d~~~~~~p~~~ 829 (1806)
.+.|--|+|-.| -|=++.++..++++-..+.+.-+..... ...+.+...+. +||+.-. |
T Consensus 242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~-~mte~~~--D---------- 308 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLA-MMTEEED--D---------- 308 (1075)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHH-hcCCccc--c----------
Confidence 444444444433 3446677777777776666532211111 11222222221 2232110 1
Q ss_pred CccchhhHHHHHhhhhcccCCCCCCCCCCcccCCCCCCcceeecCCcchhhhhhHHHHHHHHHHHHHhhhccc-hhHhHH
Q 000237 830 PRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNTRVVTASALGIFASKLHEG-SIQFVI 908 (1806)
Q Consensus 830 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~n~d~~~~~~~~~~ggd~~lv~~~tRi~aA~alG~l~~~~~~~-~~~~~~ 908 (1806)
.+-.|-|.- +|-+ .-..-..|-++|-+++++++.. ....++
T Consensus 309 ---------------------------~ew~~~d~~---------ded~--~~~~~~~A~~~lDrlA~~L~g~~v~p~~~ 350 (1075)
T KOG2171|consen 309 ---------------------------DEWSNEDDL---------DEDD--EETPYRAAEQALDRLALHLGGKQVLPPLF 350 (1075)
T ss_pred ---------------------------hhhcccccc---------cccc--ccCcHHHHHHHHHHHHhcCChhhehHHHH
Confidence 000011110 0000 1112246789999999999865 566778
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHhhccccCCCCccCCCCCCCcchhHHHHHHHhccCCCCCCCCCCCChhhhhhHHH
Q 000237 909 DPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYG 988 (1806)
Q Consensus 909 ~~L~~~L~S~sa~qR~~aalvi~ewa~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Y~El~~~l~ 988 (1806)
+.+-.+|+|+.-..|..|=|.++.-+.-+... ....+..+.+...+.+.++ +|
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~---------------m~~~l~~Il~~Vl~~l~Dp-hp----------- 403 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSDV---------------MIGNLPKILPIVLNGLNDP-HP----------- 403 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHH---------------HHHHHHHHHHHHHhhcCCC-CH-----------
Confidence 88889999999999999988888776533222 0111222333333333333 44
Q ss_pred HHHHHHHHHHHHHHhcccccccccccccccccccchhhHHHHHHhhccCCCCCCCCCcchhhhhHHHH-HHHHHHHHHHH
Q 000237 989 KMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLGSNSDGSESLSRQMLDDIES-IKQRMLTTSGY 1067 (1806)
Q Consensus 989 ~lr~ec~~Ll~~~~~~~~~~~~~~~~~ip~~~~~v~~~ie~A~~~~~~~~~l~~~~~~~~~~~~~le~-~r~~l~~~i~~ 1067 (1806)
|+|..|-..+.-+... + +.+ ++. .++++.-++-+
T Consensus 404 rVr~AA~naigQ~std-----l-------------~p~---------------------------iqk~~~e~l~~aL~~ 438 (1075)
T KOG2171|consen 404 RVRYAALNAIGQMSTD-----L-------------QPE---------------------------IQKKHHERLPPALIA 438 (1075)
T ss_pred HHHHHHHHHHHhhhhh-----h-------------cHH---------------------------HHHHHHHhccHHHHH
Confidence 5665554333222210 0 000 111 12222222222
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhhc-CCC-CCCCcchHHHHH----hhhhhchHHHHHHHHHHHHHHHHHhhcCCCCChhH
Q 000237 1068 LKCVQSNLHVTVSALVAAAVVWMS-ELP-ARLNPIILPLMA----SIKREQEEKLQEKAAEALAELIADCIARKPSPNDK 1141 (1806)
Q Consensus 1068 ~~~~~~~~~~~V~A~~A~A~v~l~-~LP-~KLNPiIkpLMe----SIK~EEn~~LQ~~sA~sla~Li~~~~~~~~~p~~K 1141 (1806)
. .-..-+.||++.+|+|++.|. ..| +.+.|.--+||+ -.+.=....+|..+..+||..=+-+-..--.=.|.
T Consensus 439 ~--ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~ 516 (1075)
T KOG2171|consen 439 L--LDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR 516 (1075)
T ss_pred H--hcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 2 224556799999999999864 344 467777777777 34555668899999999987666554333334566
Q ss_pred HHHHhhhhc--cCCCCCCCccccCCCcccccccccccc-----ccccCcccc--------cccccCCCccccccchhhhc
Q 000237 1142 LIKNICSLT--SMDPCETPQAAAMGSMEIIDDQDFLSF-----GSSTGKQKS--------RAHMLAGGEDRSRVEGFISR 1206 (1806)
Q Consensus 1142 IikNLc~fl--C~D~~~tP~~~~~~~~~~~~~~gilsl-----~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~R 1206 (1806)
++-+|-.|+ |.|...-+--.. +.+. +|+ +|+.=.... .+.......+.-....
T Consensus 517 ~Mp~L~~~L~n~~~~d~r~Lrgk--tmEc------isli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy---- 584 (1075)
T KOG2171|consen 517 LMPLLKNFLQNADDKDLRELRGK--TMEC------LSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSY---- 584 (1075)
T ss_pred HHHHHHHHHhCCCchhhHHHHhh--HHHH------HHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHH----
Confidence 777777775 332222111000 0010 111 111100000 0000011111111122
Q ss_pred ccHHHHHHHHHHHhccchhhhchhhHHHhhh--hccCCCC--CchhHHHhhh-c----cCCChh-----------HHHHH
Q 000237 1207 RGSELALRHLCGKFGVSLFDKLPKLWDCLTE--VLIPDGP--SNKKKIILAI-E----SVRDPQ-----------ILINN 1266 (1806)
Q Consensus 1207 rGA~~al~~l~~~fg~~l~~~lP~L~~~~~~--~l~~~~~--~~~~~~~~~~-~----~~~~~q-----------~lid~ 1266 (1806)
-..+...+|+.+|++.-.=+|..---+.. -+.+.+. +........+ . .+..++ +--.+
T Consensus 585 --~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A 662 (1075)
T KOG2171|consen 585 --MIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETA 662 (1075)
T ss_pred --HHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHH
Confidence 23377789999999875444432211111 1111111 1100000000 0 011122 23345
Q ss_pred HHHHHHhhccCChhhhHHHHhhhH-HHHHhhcCChhHHHHHHHHHHHHhhhhcc------HHHHHHHHHHhhcccCCccc
Q 000237 1267 IQLVRSIAPMLDEALKPKLLTLLP-CIFKCVCHSHVSVRLAASRCITSMAKSMT------INVMAAVVENAIPMLGDMTS 1339 (1806)
Q Consensus 1267 l~vl~~~~p~~~~~l~~~~~~llp-~~~~~l~~~~~~vR~~aa~c~a~~~~~~~------~~~~~~~~~~~~p~l~~~~~ 1339 (1806)
+..|-..+-.+-.+..|.+.+.+. .+..+.-+.+--||++|+.|+-.+++..- -.....+.+.++|.+-....
T Consensus 663 ~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~ 742 (1075)
T KOG2171|consen 663 CEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALE 742 (1075)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhh
Confidence 555555555566666677776666 34445556888999999999988875422 12556666777776654321
Q ss_pred hhhccchhHHHHHHHhhcCCcccCCc
Q 000237 1340 VHARQGAGMLISLLVQGLGAELVPYA 1365 (1806)
Q Consensus 1340 ~~~r~ga~~~~~~~~~~~~~~~~py~ 1365 (1806)
+.--.+++..+.+.++.-|.+|.
T Consensus 743 ---~E~e~~vl~~vl~~f~~~i~~~G 765 (1075)
T KOG2171|consen 743 ---EEPETEVLSEILESFAECIEVMG 765 (1075)
T ss_pred ---cCCcHHHHHHHHHHHHHHHHhcC
Confidence 11122334444444444444444
No 104
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=96.70 E-value=0.0038 Score=81.63 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=87.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEI 1520 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei 1520 (1806)
+..+|-.+|+++|-.| ..|...++|.-+-.|||+.|=..++....+. .+++--.| +.|-.|=.++|
T Consensus 294 ~pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAialaq~h~---------TR~iYTSPIKALSNQKfRDF 360 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALAQKHM---------TRTIYTSPIKALSNQKFRDF 360 (1248)
T ss_pred CCCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHHHhhc---------cceEecchhhhhccchHHHH
Confidence 4567889999999655 3556679999999999999966665444332 46777788 77778888889
Q ss_pred HHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhH----hhhccccceEEEEcccccccCh
Q 000237 1521 EKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDA----DYLGQLLWNYCILDEGHIIKNS 1587 (1806)
Q Consensus 1521 ~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di----~~L~~i~w~~VILDEaH~IKN~ 1587 (1806)
+.-++.- . ..+|.-. ..+.+..+|+|-+++|+.. +.+++ -..||+||.|+|.+-
T Consensus 361 k~tF~Dv--g--LlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHYiND~ 418 (1248)
T KOG0947|consen 361 KETFGDV--G--LLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHYINDV 418 (1248)
T ss_pred HHhcccc--c--eeeccee-------eCCCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeeecccc
Confidence 8877432 2 4566532 2257789999999999875 34444 466999999999663
No 105
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.019 Score=74.04 Aligned_cols=164 Identities=17% Similarity=0.138 Sum_probs=103.4
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf 1523 (1806)
.+-|.|..++-.+. .+...+....+|.|||+. |+.-....-.. .......+.||++|.- |..|-.+++.+|
T Consensus 51 ~pt~IQ~~~IP~~l----~g~Dvi~~A~TGsGKT~A---f~lP~l~~l~~-~~~~~~~~aLil~PTRELA~Qi~~~~~~~ 122 (513)
T COG0513 51 EPTPIQLAAIPLIL----AGRDVLGQAQTGTGKTAA---FLLPLLQKILK-SVERKYVSALILAPTRELAVQIAEELRKL 122 (513)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHH---HHHHHHHHHhc-ccccCCCceEEECCCHHHHHHHHHHHHHH
Confidence 34578988885443 335568889999999853 33322221110 0011112299999955 889999999999
Q ss_pred hccC-CceEEEEecChhHHHHHHhhhc-CCcEEEeeHHHHHhhHh--hhccccceEEEEcccccccCh--hhHHHHHHHH
Q 000237 1524 IDVS-LMSTLQYVGSAQDRIALREQFD-KHNVIITSYDVVRKDAD--YLGQLLWNYCILDEGHIIKNS--KSKITVAVKQ 1597 (1806)
Q Consensus 1524 ~~~p-~l~vliy~Gs~~~R~~l~~~l~-~~dVVITSYe~Lr~di~--~L~~i~w~~VILDEaH~IKN~--~Sk~skalk~ 1597 (1806)
.... .+++..+.|....+... ..+. ..+|||.|-..+-..+. .+.-....++|+|||-++-+. ...+...+..
T Consensus 123 ~~~~~~~~~~~i~GG~~~~~q~-~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~ 201 (513)
T COG0513 123 GKNLGGLRVAVVYGGVSIRKQI-EALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKA 201 (513)
T ss_pred HhhcCCccEEEEECCCCHHHHH-HHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHh
Confidence 8655 57776666665444333 3332 48999999988864433 234445789999999999765 2233344444
Q ss_pred hhh-cceEEeccCCCCCChhhH
Q 000237 1598 LKA-AHRLILSGTPIQNNITDL 1618 (1806)
Q Consensus 1598 L~A-~~RLlLTGTPIqNnl~EL 1618 (1806)
+.. ...++.|+|--. .+.++
T Consensus 202 ~p~~~qtllfSAT~~~-~i~~l 222 (513)
T COG0513 202 LPPDRQTLLFSATMPD-DIREL 222 (513)
T ss_pred CCcccEEEEEecCCCH-HHHHH
Confidence 444 556889999866 34443
No 106
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=96.58 E-value=0.01 Score=74.44 Aligned_cols=179 Identities=15% Similarity=0.083 Sum_probs=113.1
Q ss_pred CCCCCccCcccc--------cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCc
Q 000237 1432 HIDDYKLGTELK--------VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503 (1806)
Q Consensus 1432 ~i~~~~ip~~lk--------~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~p 1503 (1806)
.+....+|..++ .+|.|-|.-+|.. -.-.|.+-++...++.|||+.+ =++.....-. .-++
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIg--ElAGi~~~l~------~g~K 263 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIG--ELAGIPRLLS------GGKK 263 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhh---ccccCCceEEEeccCCCcchHH--HhhCcHHHHh------CCCe
Confidence 344556666653 4789999988842 1113344578889999999866 2332222111 1278
Q ss_pred EEEEec-cccHHHHHHHHHHhhccCCceEEEEecChhHHHHH----HhhhcCCcEEEeeHHHHHhhHhh-hccccceEEE
Q 000237 1504 SLIICP-STLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIAL----REQFDKHNVIITSYDVVRKDADY-LGQLLWNYCI 1577 (1806)
Q Consensus 1504 tLIVcP-~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l----~~~l~~~dVVITSYe~Lr~di~~-L~~i~w~~VI 1577 (1806)
.|.++| ..|..|=.++|++-...-.+++-+-.|...-+..- ...-.++||++-||+-+--.... -.--+.+.||
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVV 343 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVV 343 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEE
Confidence 999999 55777878888876655667887778876433221 12335789999999977433221 1112468999
Q ss_pred EcccccccC--hhhHHHHHHHHh----hhcceEEeccCCCCCChhhHHhhhh
Q 000237 1578 LDEGHIIKN--SKSKITVAVKQL----KAAHRLILSGTPIQNNITDLWSLFD 1623 (1806)
Q Consensus 1578 LDEaH~IKN--~~Sk~skalk~L----~A~~RLlLTGTPIqNnl~ELwSLL~ 1623 (1806)
+||.|.+.. ....+--.+.+| .....+.||+|= .|+.||..-+.
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~ 393 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLG 393 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhC
Confidence 999999976 222222233333 234567899995 56778877665
No 107
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.013 Score=75.62 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=114.8
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEK 1522 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~k 1522 (1806)
..+|+=|.++|+.+. .+.+.+.--.+|-||++.- -+-++.. .+.+|||.| -+|+..=.+.+..
T Consensus 16 ~~FR~gQ~evI~~~l----~g~d~lvvmPTGgGKSlCy--QiPAll~----------~G~TLVVSPLiSLM~DQV~~l~~ 79 (590)
T COG0514 16 ASFRPGQQEIIDALL----SGKDTLVVMPTGGGKSLCY--QIPALLL----------EGLTLVVSPLISLMKDQVDQLEA 79 (590)
T ss_pred cccCCCHHHHHHHHH----cCCcEEEEccCCCCcchHh--hhHHHhc----------CCCEEEECchHHHHHHHHHHHHH
Confidence 357999999998764 3467788899999999632 1111111 178999999 7899888888887
Q ss_pred hhccCCceEEEEec--ChhHHHHHHhhhc--CCcEEEeeHHHHHhh--HhhhccccceEEEEcccccccCh---hhHHHH
Q 000237 1523 FIDVSLMSTLQYVG--SAQDRIALREQFD--KHNVIITSYDVVRKD--ADYLGQLLWNYCILDEGHIIKNS---KSKITV 1593 (1806)
Q Consensus 1523 f~~~p~l~vliy~G--s~~~R~~l~~~l~--~~dVVITSYe~Lr~d--i~~L~~i~w~~VILDEaH~IKN~---~Sk~sk 1593 (1806)
.. +......+ +..++......+. ..+++..+-+.+.+. .+.+......+++|||||-+..= -..-|.
T Consensus 80 ~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 80 AG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred cC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHH
Confidence 64 33333333 3456666655554 478999999998765 35677888999999999987431 233344
Q ss_pred HHHHhhh----cceEEeccCCCCCChhhHHhhhhhhCCC
Q 000237 1594 AVKQLKA----AHRLILSGTPIQNNITDLWSLFDFLMPG 1628 (1806)
Q Consensus 1594 alk~L~A----~~RLlLTGTPIqNnl~ELwSLL~FL~Pg 1628 (1806)
.+..+.. .-++.||||--+---.|+-..|..=.|.
T Consensus 156 ~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~ 194 (590)
T COG0514 156 RLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDAN 194 (590)
T ss_pred HHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcc
Confidence 4555544 4689999998777777888777655553
No 108
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=96.45 E-value=0.022 Score=74.62 Aligned_cols=137 Identities=18% Similarity=0.089 Sum_probs=83.1
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHH---HHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGH---WAF 1518 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~q---W~~ 1518 (1806)
...++|-|..|+--|. .|.|.--.+|-|||+.+...+...... -..++||+|.. |..| |..
T Consensus 101 g~~p~~VQ~~~~~~ll------~G~Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~qdae~~~ 165 (656)
T PRK12898 101 GQRHFDVQLMGGLALL------SGRLAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAERDAELMR 165 (656)
T ss_pred CCCCChHHHHHHHHHh------CCCeeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHHHHHHHH
Confidence 3455667777764432 123777899999999876555432211 15799999966 5544 555
Q ss_pred HHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEee-----HHHHHhhHh-----------------------hhcc
Q 000237 1519 EIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITS-----YDVVRKDAD-----------------------YLGQ 1570 (1806)
Q Consensus 1519 Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITS-----Ye~Lr~di~-----------------------~L~~ 1570 (1806)
.+.+|+ .+++..+.|..... .+......+|++.| ++.+|.... ..-.
T Consensus 166 ~l~~~l---Glsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 240 (656)
T PRK12898 166 PLYEAL---GLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLL 240 (656)
T ss_pred HHHhhc---CCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcc
Confidence 555554 57777766653321 22333567999998 444443321 1223
Q ss_pred ccceEEEEcccccccChhhHHHHHHHHhhhcceEEeccCC
Q 000237 1571 LLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTP 1610 (1806)
Q Consensus 1571 i~w~~VILDEaH~IKN~~Sk~skalk~L~A~~RLlLTGTP 1610 (1806)
..++++|+||+..+-=- .|+.-+++||.+
T Consensus 241 r~~~~aIvDEvDSiLiD-----------eartpliis~~~ 269 (656)
T PRK12898 241 RGLHFAIVDEADSVLID-----------EARTPLIISAPA 269 (656)
T ss_pred cccceeEeecccceeec-----------cCCCceEEECCC
Confidence 45899999999876210 345568888854
No 109
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.42 E-value=0.015 Score=78.33 Aligned_cols=139 Identities=12% Similarity=0.029 Sum_probs=81.3
Q ss_pred hcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHhhccC-CceEEEEecChh
Q 000237 1462 RFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKFIDVS-LMSTLQYVGSAQ 1539 (1806)
Q Consensus 1462 ~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf~~~p-~l~vliy~Gs~~ 1539 (1806)
..+...|+.-++|.|||.+..-.+..... ..+.++|+.|.- +..+-.+.+.+..+.. ...+....+...
T Consensus 15 ~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~ 85 (819)
T TIGR01970 15 AAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN 85 (819)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc
Confidence 45567899999999999998766653221 115799999966 4456666666554322 122222222111
Q ss_pred HHHHHHhhhcCCcEEEeeHHHHHhhHhh-hccccceEEEEccccc-ccChhhH--HHHHH-HHhhhc-ceEEeccCCCCC
Q 000237 1540 DRIALREQFDKHNVIITSYDVVRKDADY-LGQLLWNYCILDEGHI-IKNSKSK--ITVAV-KQLKAA-HRLILSGTPIQN 1613 (1806)
Q Consensus 1540 ~R~~l~~~l~~~dVVITSYe~Lr~di~~-L~~i~w~~VILDEaH~-IKN~~Sk--~skal-k~L~A~-~RLlLTGTPIqN 1613 (1806)
. .-.+.+|+++|...+.+.+.. ..--.+.+||+||+|. .-+.+-. ..+.+ ..++.+ ..+++|+|.-..
T Consensus 86 -~-----~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 86 -K-----VSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred -c-----cCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 0 112457999999888765432 1123578999999994 4443321 11222 223333 457799998654
Q ss_pred Ch
Q 000237 1614 NI 1615 (1806)
Q Consensus 1614 nl 1615 (1806)
.+
T Consensus 160 ~l 161 (819)
T TIGR01970 160 RL 161 (819)
T ss_pred HH
Confidence 43
No 110
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=96.40 E-value=0.014 Score=78.81 Aligned_cols=139 Identities=12% Similarity=0.017 Sum_probs=80.1
Q ss_pred cCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHhhccC-CceEEEEecChhH
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKFIDVS-LMSTLQYVGSAQD 1540 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf~~~p-~l~vliy~Gs~~~ 1540 (1806)
.+...|+.-++|.|||.+..-.+.... . . .+.++|++|.- +..+-.+.+.+..+.. ...+....+....
T Consensus 19 ~~~~vvv~A~TGSGKTt~~pl~lL~~~----~----~-~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~ 89 (812)
T PRK11664 19 TAPQVLLKAPTGAGKSTWLPLQLLQHG----G----I-NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK 89 (812)
T ss_pred hCCCEEEEcCCCCCHHHHHHHHHHHcC----C----c-CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc
Confidence 455679999999999998865443211 0 1 15799999966 4466777776655322 2233322222211
Q ss_pred HHHHHhhhcCCcEEEeeHHHHHhhHhh-hccccceEEEEcccccc-cChhhHHH---HHHHHhhhc-ceEEeccCCCCCC
Q 000237 1541 RIALREQFDKHNVIITSYDVVRKDADY-LGQLLWNYCILDEGHII-KNSKSKIT---VAVKQLKAA-HRLILSGTPIQNN 1614 (1806)
Q Consensus 1541 R~~l~~~l~~~dVVITSYe~Lr~di~~-L~~i~w~~VILDEaH~I-KN~~Sk~s---kalk~L~A~-~RLlLTGTPIqNn 1614 (1806)
. -....|+|+|...+.+.+.. ..-..+.+||+||+|.. -+.+-... +..+.++.+ ..+++|+|.-...
T Consensus 90 ~------~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~ 163 (812)
T PRK11664 90 V------GPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDR 163 (812)
T ss_pred c------CCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHH
Confidence 0 12346999999988765432 12245899999999972 22221111 122233333 4588999986543
Q ss_pred hh
Q 000237 1615 IT 1616 (1806)
Q Consensus 1615 l~ 1616 (1806)
+.
T Consensus 164 l~ 165 (812)
T PRK11664 164 LQ 165 (812)
T ss_pred HH
Confidence 33
No 111
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=96.37 E-value=0.013 Score=77.17 Aligned_cols=126 Identities=15% Similarity=0.086 Sum_probs=74.0
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf 1523 (1806)
.+|||+.+-+..+.. +.|.|.--.+|-|||+.+..-+......+ ..++||+|.. |..|=.+++.++
T Consensus 54 g~~p~~vQlig~~~l----~~G~Iaem~TGeGKTLva~lpa~l~aL~G---------~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 54 GMRPFDVQLIGGIAL----HKGKIAEMKTGEGKTLTATLPAYLNALTG---------KGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred CCCccchHHhhhhhh----cCCceeeecCCCccHHHHHHHHHHHHHhC---------CCEEEEcCCHHHHHHHHHHHHHH
Confidence 456666555555532 23446668999999997643332111111 4699999976 444444444444
Q ss_pred hccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHH-----HhhH----hhhccccceEEEEccccccc
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVV-----RKDA----DYLGQLLWNYCILDEGHIIK 1585 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~L-----r~di----~~L~~i~w~~VILDEaH~IK 1585 (1806)
+..-.+++....|......+ ...-..+|++.|...+ +... +.+....++++|+||+|.+-
T Consensus 121 ~~~LGLsv~~i~g~~~~~~r--~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 121 YRFLGLSVGLILSGMSPEER--REAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred hccCCCeEEEEeCCCCHHHH--HHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 43335788777765432211 1222479999997654 3321 22344568999999999873
No 112
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=96.23 E-value=0.021 Score=71.43 Aligned_cols=174 Identities=17% Similarity=0.156 Sum_probs=106.0
Q ss_pred CCCCCccCccccc--------ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCc
Q 000237 1432 HIDDYKLGTELKV--------TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP 1503 (1806)
Q Consensus 1432 ~i~~~~ip~~lk~--------~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~p 1503 (1806)
+..++++...... .+..-|++.|-..+ .|...+=|.-+|.|||+.-+.=+....+..+ ++. .+...
T Consensus 70 kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL----~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k-Ws~-~DGlG 143 (758)
T KOG0343|consen 70 KFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMAL----QGHDVLGAAKTGSGKTLAFLVPVLEALYRLK-WSP-TDGLG 143 (758)
T ss_pred hHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhc----cCcccccccccCCCceeeehHHHHHHHHHcC-CCC-CCCce
Confidence 3445555544333 44557888775432 2222344578999999755433333222222 111 22256
Q ss_pred EEEEeccc-cHHHHHHHHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh---hccccceEEEEc
Q 000237 1504 SLIICPST-LVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY---LGQLLWNYCILD 1579 (1806)
Q Consensus 1504 tLIVcP~S-Ll~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~---L~~i~w~~VILD 1579 (1806)
+|||.|.. |..|-.+-+.+......+....+.|+..-. .-...+.+-+|+|+|...+-...+. |..-+..++|||
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLD 222 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-FELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLD 222 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH-HHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEec
Confidence 89999955 777877777777666677777777765432 2244567889999999999887764 444557899999
Q ss_pred ccccccChh--hHHHHHHHHh-hhcceEEeccCCCC
Q 000237 1580 EGHIIKNSK--SKITVAVKQL-KAAHRLILSGTPIQ 1612 (1806)
Q Consensus 1580 EaH~IKN~~--Sk~skalk~L-~A~~RLlLTGTPIq 1612 (1806)
||.++-... ..+...+..| ..+..++.|+|+..
T Consensus 223 EADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~ 258 (758)
T KOG0343|consen 223 EADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTK 258 (758)
T ss_pred cHHHHHHHhHHHHHHHHHHhCChhheeeeeecccch
Confidence 999985422 2222233344 33446778888753
No 113
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.23 E-value=0.019 Score=76.65 Aligned_cols=46 Identities=17% Similarity=0.026 Sum_probs=39.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~ 1490 (1806)
..||.|.+...-.......+.++++--.+|.|||+.+|+.......
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~ 55 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQ 55 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHH
Confidence 3599999999988888888899999999999999999888766443
No 114
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.19 E-value=1.4 Score=58.85 Aligned_cols=89 Identities=24% Similarity=0.373 Sum_probs=75.4
Q ss_pred hhhhHHHHHHHHhhcCChhh---HHHHHHHHHhhccC----------------------------------Cceeeeccc
Q 000237 529 VRETCAQALGAAFKYMHPSL---VYETLYILLQMQRR----------------------------------PEWEIRHGS 571 (1806)
Q Consensus 529 VRET~AQ~Lgall~~m~~~~---v~~~~~iLl~~q~~----------------------------------~~WEvrHGg 571 (1806)
.||-|=|+|++.+.+.|.+- +.++++.++.-... -.|-||-.+
T Consensus 273 LrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaA 352 (1233)
T KOG1824|consen 273 LREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAA 352 (1233)
T ss_pred HHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHH
Confidence 69999999999999999874 55666666544321 149999999
Q ss_pred ccchhhhhhhhhhhHHhHHhhHHHHHHccCCCCCchHHHhHHhhhh
Q 000237 572 LLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALI 617 (1806)
Q Consensus 572 LLGiKYlvAVR~dll~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~ 617 (1806)
.=.|--++.-|.|||++++..+-|+++.-+++..+-|++-.-.+++
T Consensus 353 aKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi 398 (1233)
T KOG1824|consen 353 AKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYI 398 (1233)
T ss_pred HHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9888889999999999999999999999999999999987666654
No 115
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=7.7 Score=51.40 Aligned_cols=631 Identities=19% Similarity=0.233 Sum_probs=330.9
Q ss_pred hhhhHHHHHHHH-hhcCChhhHHHHHHHHHhhccC--Cceeeecccccchhhhh-hhhhhhHHhHHhhHHHHHHccCC--
Q 000237 529 VRETCAQALGAA-FKYMHPSLVYETLYILLQMQRR--PEWEIRHGSLLGIKYLV-AVRQEMLHGLLGYVLPACRAGLE-- 602 (1806)
Q Consensus 529 VRET~AQ~Lgal-l~~m~~~~v~~~~~iLl~~q~~--~~WEvrHGgLLGiKYlv-AVR~dll~~lL~~Vl~a~~~GL~-- 602 (1806)
++-++||.+|++ ...+|...--+.+..|.-+... +. .++.|.|..|-|.- -++.+.+.+.-..||-||++|-.
T Consensus 106 ~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~-~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~ 184 (859)
T KOG1241|consen 106 RPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQAS-MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKE 184 (859)
T ss_pred ccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccch-HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhcccc
Confidence 457889999987 6778888888888888666544 55 79999999999986 23455556677899999999985
Q ss_pred CCCchHHHhHHhhhhhhHHHHHhhchhhHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhcCc-hhhHHhhcccccccc
Q 000237 603 DPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQE-EMIPKMVGATSKQEF 681 (1806)
Q Consensus 603 D~DDDVraVAA~~L~Pia~~~v~~~~~~l~~il~~LWd~L~~lDDLs~St~svM~LLa~l~s~~-~v~~~~~~~~~~~~~ 681 (1806)
.++-+||=.|--+|.-- |..--+..+++ |.-=+|
T Consensus 185 e~s~~vRLaa~~aL~ns------------------------------------Lef~~~nF~~E~ern~iM--------- 219 (859)
T KOG1241|consen 185 ETSAAVRLAALNALYNS------------------------------------LEFTKANFNNEMERNYIM--------- 219 (859)
T ss_pred CCchhHHHHHHHHHHHH------------------------------------HHHHHHhhccHhhhceee---------
Confidence 56788887665555221 11111111111 111112
Q ss_pred ccchhcccccCCCCCCCCCCchhhhcccccccccccccchhhHHHHHHHHHHHHHhccccccccCCCCCCCchhchhhHH
Q 000237 682 DLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTL 761 (1806)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~~~~~~~~~~~~~~~W~~~i~~~~L 761 (1806)
.|++.. . +.+ =..||.||+.+|-++.+.-|+-+ ...+.+.++
T Consensus 220 ---qvvcEa-----t--q~~------------------d~~i~~aa~~ClvkIm~LyY~~m----------~~yM~~alf 261 (859)
T KOG1241|consen 220 ---QVVCEA-----T--QSP------------------DEEIQVAAFQCLVKIMSLYYEFM----------EPYMEQALF 261 (859)
T ss_pred ---eeeeec-----c--cCC------------------cHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 122210 0 111 14799999999999999887611 112444455
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcCChhhHHHhhhhhHHHHHHHhhcCCCCCCCCCccccccCCCccchhhHHHHH
Q 000237 762 RIVFQNLLLESNEEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAKM 841 (1806)
Q Consensus 762 R~vFQnlLlE~~~~I~~~s~~vW~~ll~~~~~~~~~~~~~~~~~wl~L~mtP~g~~~d~~~~~~p~~~~~~~~~~~~~k~ 841 (1806)
-+.-+.+- ++|++|-=...+-|...-...-....... .. +--|.|- +++.|--.+.+-.-|
T Consensus 262 aitl~amk-s~~deValQaiEFWsticeEEiD~~~e~~-e~---------~d~~~~p-~~~~fa~~a~~~v~P------- 322 (859)
T KOG1241|consen 262 AITLAAMK-SDNDEVALQAIEFWSTICEEEIDLAIEYG-EA---------VDQGLPP-SSKYFARQALQDVVP------- 322 (859)
T ss_pred HHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------hhcCCCc-hhhHHHHHHHhHhhH-------
Confidence 55555555 99999999999999977642111000000 00 0001110 111110000000000
Q ss_pred hhhhcccCCCCCCCCCCcccCCCCCCcceeecCCcchhhhhhHHHHHHHHHHHHHhhhccchhHhHHHHHHHhhcCCchh
Q 000237 842 RAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGV 921 (1806)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~n~d~~~~~~~~~~ggd~~lv~~~tRi~aA~alG~l~~~~~~~~~~~~~~~L~~~L~S~sa~ 921 (1806)
.-.+ .-.+++-|.- +|. ++--.+|+.+|+.+.-+.-.....-+...+-..+++|+--
T Consensus 323 --~Ll~--------~L~kqde~~d---------~Dd----Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr 379 (859)
T KOG1241|consen 323 --VLLE--------LLTKQDEDDD---------DDD----WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWR 379 (859)
T ss_pred --HHHH--------HHHhCCCCcc---------ccc----CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchh
Confidence 0000 0000111111 111 3334577788888887776666666666666789999988
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccCCCCCCCcchhHHHHHHHhccCCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHHH
Q 000237 922 QRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQWLLDLLACSDPTYPTKDSLLPYAELSRTYGKMRNEASQLLRAM 1001 (1806)
Q Consensus 922 qR~~aalvi~ewa~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Y~El~~~l~~lr~ec~~Ll~~~ 1001 (1806)
.|-.|+|-+-.--. ...+ ..-.|.-+.+++.+..... ++. -..|+-.+-+|.|+-.-+......
T Consensus 380 ~reaavmAFGSIl~---gp~~---~~Lt~iV~qalp~ii~lm~---D~s------l~VkdTaAwtlgrI~d~l~e~~~n- 443 (859)
T KOG1241|consen 380 NREAAVMAFGSILE---GPEP---DKLTPIVIQALPSIINLMS---DPS------LWVKDTAAWTLGRIADFLPEAIIN- 443 (859)
T ss_pred hhhHHHHHHHhhhc---CCch---hhhhHHHhhhhHHHHHHhc---Cch------hhhcchHHHHHHHHHhhchhhccc-
Confidence 88888885433211 1110 0011111111112222111 221 123455555555543322210000
Q ss_pred Hhcccccccccccccccccccchh----------h-HHHHHHhhccC-CCCCCCCCcchhhhhHHHHHHHHHHHHHHHHH
Q 000237 1002 ETSSMFTEMLSANEIDVESLSADN----------A-ISFASKLQLLG-SNSDGSESLSRQMLDDIESIKQRMLTTSGYLK 1069 (1806)
Q Consensus 1002 ~~~~~~~~~~~~~~ip~~~~~v~~----------~-ie~A~~~~~~~-~~l~~~~~~~~~~~~~le~~r~~l~~~i~~~~ 1069 (1806)
....+++++.+.....+ + +..|+...... .. -. +......-++--..++.+.+...
T Consensus 444 -------~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~-~q----t~~~t~~y~~ii~~Ll~~tdr~d 511 (859)
T KOG1241|consen 444 -------QELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSN-GQ----TDPATPFYEAIIGSLLKVTDRAD 511 (859)
T ss_pred -------HhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCC-CC----CCccchhHHHHHHHHHhhccccc
Confidence 00012222222211111 1 44444444332 11 00 00111334555555666655555
Q ss_pred HHHhhhhhHHHHHHHHHHHhhcCCCCCCCcchHHHHHhhhhhchHHHH--HHHHHHHHHHHHHhhcCCCCChhHHHHHhh
Q 000237 1070 CVQSNLHVTVSALVAAAVVWMSELPARLNPIILPLMASIKREQEEKLQ--EKAAEALAELIADCIARKPSPNDKLIKNIC 1147 (1806)
Q Consensus 1070 ~~~~~~~~~V~A~~A~A~v~l~~LP~KLNPiIkpLMeSIK~EEn~~LQ--~~sA~sla~Li~~~~~~~~~p~~KIikNLc 1147 (1806)
..+.++.+ |+|.+-.=.....|+-.-|++..+-.-|-.+=+..+| ..+-.-=+.+ +-+=.|||
T Consensus 512 gnqsNLR~---AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~------------~eLQs~Lc 576 (859)
T KOG1241|consen 512 GNQSNLRS---AAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQL------------NELQSLLC 576 (859)
T ss_pred cchhhHHH---HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHH------------HHHHHHHH
Confidence 55555543 3333333334556666666666655544443333333 1111111111 12334555
Q ss_pred hhccCCCCCCCccccCCCcccccc--ccccccccccCcccccccccCCCccccccchhhhcccHHHHHHHHHHHhccchh
Q 000237 1148 SLTSMDPCETPQAAAMGSMEIIDD--QDFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCGKFGVSLF 1225 (1806)
Q Consensus 1148 ~flC~D~~~tP~~~~~~~~~~~~~--~gilsl~~~~~~~~~~~~~~~~~~~~~~~~~~i~RrGA~~al~~l~~~fg~~l~ 1225 (1806)
+.+-+=...++. .-.++.+. .+.+.+... .++. .- ---|-+|+..|+...|....
T Consensus 577 ~~Lq~i~rk~~~----~~~~~~d~iM~lflri~~s---~~s~------~v----------~e~a~laV~tl~~~Lg~~F~ 633 (859)
T KOG1241|consen 577 NTLQSIIRKVGS----DIREVSDQIMGLFLRIFES---KRSA------VV----------HEEAFLAVSTLAESLGKGFA 633 (859)
T ss_pred HHHHHHHHHccc----cchhHHHHHHHHHHHHHcC---Cccc------cc----------hHHHHHHHHHHHHHHhHhHH
Confidence 554311111110 00000000 011111111 1100 00 01256788899999999999
Q ss_pred hhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHHHHHHHHHhhccCChhhhHHHHhhhHHHHHhhcCChh--HH
Q 000237 1226 DKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHV--SV 1303 (1806)
Q Consensus 1226 ~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid~l~vl~~~~p~~~~~l~~~~~~llp~~~~~l~~~~~--~v 1303 (1806)
.-.|.+...|...|.. -.+-|-..-+.+++--++-.|.....|--..++..++.||+|+.. -|
T Consensus 634 kym~~f~pyL~~gL~n---------------~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~v 698 (859)
T KOG1241|consen 634 KYMPAFKPYLLMGLSN---------------FQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNV 698 (859)
T ss_pred HHHHHHHHHHHHHhhc---------------chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccc
Confidence 9999999999887721 123566677777777788888888888888888889999998753 34
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCccch--------------hhccchhHHHHHHHhhcCC-----cccCC
Q 000237 1304 RLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSV--------------HARQGAGMLISLLVQGLGA-----ELVPY 1364 (1806)
Q Consensus 1304 R~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~~~~--------------~~r~ga~~~~~~~~~~~~~-----~~~py 1364 (1806)
.-..=.||+.||-.+..+ +...++.++|++....++ ..|.|.+|+...++..++. .+-||
T Consensus 699 KP~IlS~FgDIAlaIg~~-F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~ 777 (859)
T KOG1241|consen 699 KPAILSVFGDIALAIGAD-FEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPY 777 (859)
T ss_pred cchHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcc
Confidence 456677999999877654 555677899988755422 3699999999999999984 23377
Q ss_pred cch
Q 000237 1365 APL 1367 (1806)
Q Consensus 1365 ~~~ 1367 (1806)
+..
T Consensus 778 v~~ 780 (859)
T KOG1241|consen 778 VPH 780 (859)
T ss_pred hHH
Confidence 765
No 116
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.14 E-value=0.02 Score=59.32 Aligned_cols=119 Identities=20% Similarity=0.221 Sum_probs=68.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecccc-HHHHHHHHHHhhccCCceEEEEecChhHHH
Q 000237 1464 KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTL-VGHWAFEIEKFIDVSLMSTLQYVGSAQDRI 1542 (1806)
Q Consensus 1464 ~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SL-l~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~ 1542 (1806)
++.+++.-+.|.|||..+-.++........... ...-..+-||..- ...+..++...++.+... ..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~---- 72 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKN---HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTS---- 72 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC---CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-H----
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC---CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCH----
Confidence 345688889999999988888776544322111 1123455556444 566666766666433222 0111
Q ss_pred HHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHh--hhcceEEeccCC
Q 000237 1543 ALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL--KAAHRLILSGTP 1610 (1806)
Q Consensus 1543 ~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L--~A~~RLlLTGTP 1610 (1806)
.+....-.+.+....-.++|+||+|++. +......++.+ .....++++|||
T Consensus 73 ---------------~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 73 ---------------DELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp ---------------HHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ---------------HHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 1111122233444444799999999984 35666667777 566789999999
No 117
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.14 E-value=0.043 Score=61.67 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=41.8
Q ss_pred ccchHHHHHHHHHHHHhhcCCc-eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLH-GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEK 1522 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~g-GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~k 1522 (1806)
+|-+.|..++..+. ...+ .++.-.+|.|||.....++........ .......+++||++|.. .+.+=.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~----~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~-~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSAL----SSNGITLIQGPPGTGKTTTLASIIAQLLQRFK-SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHC----TSSE-EEEE-STTSSHHHHHHHHHHHH--------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH----cCCCCEEEECCCCCChHHHHHHHHHHhccchh-hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 46789999996542 2233 678889999999777777766522100 00012237899999954 55666666555
No 118
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.12 E-value=9 Score=51.77 Aligned_cols=200 Identities=22% Similarity=0.280 Sum_probs=128.4
Q ss_pred CCcchHHHHHhhhhhchHHHHHHHHHHHHHHHHHhh-cCCCCChhHHHHHhhhhccCCCCCCCccccCCCcccccccccc
Q 000237 1097 LNPIILPLMASIKREQEEKLQEKAAEALAELIADCI-ARKPSPNDKLIKNICSLTSMDPCETPQAAAMGSMEIIDDQDFL 1175 (1806)
Q Consensus 1097 LNPiIkpLMeSIK~EEn~~LQ~~sA~sla~Li~~~~-~~~~~p~~KIikNLc~flC~D~~~tP~~~~~~~~~~~~~~gil 1175 (1806)
+.++.-|+|.+|-. -+=+.||+++...-++|- -|...|+. +....|.|+.. + . -
T Consensus 518 ~~~Ls~~v~~aV~d----~fyKisaEAL~v~~~lvkvirpl~~~~------------~~d~~~~v~~m------~-~--~ 572 (1233)
T KOG1824|consen 518 LSALSPPVVAAVGD----PFYKISAEALLVCQQLVKVIRPLQPPS------------SFDASPYVKTM------Y-D--C 572 (1233)
T ss_pred hhhhhhHHHHHhcC----chHhhhHHHHHHHHHHHHHhcccCCCc------------cCCCChhHHHH------H-H--H
Confidence 34444466777642 456789999998888877 33333321 22223333221 0 0 1
Q ss_pred ccccccCcccccccccCCCccccccchhhhcccHHHHHHHHHHHhccchhhhchhhHHHhhhhccCCCCCchhHHHhhhc
Q 000237 1176 SFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIE 1255 (1806)
Q Consensus 1176 sl~~~~~~~~~~~~~~~~~~~~~~~~~~i~RrGA~~al~~l~~~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~ 1255 (1806)
++.+ -.+...+.|.+++.|. ++.++...||+.|=..+|.--..+.+-|.....
T Consensus 573 tl~r----------L~a~d~DqeVkeraIs------cmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiT----------- 625 (1233)
T KOG1824|consen 573 TLQR----------LKATDSDQEVKERAIS------CMGQIIANFGDFLGNELPRTLPILLERLGNEIT----------- 625 (1233)
T ss_pred HHHH----------HhcccccHHHHHHHHH------HHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhH-----------
Confidence 1111 0112234455555555 777888999999999999888888877632111
Q ss_pred cCCChhHHHHHHHHHHHhhccCChhhhHHHHhhhHHHHHhhcCChhHHHHHHHHHHHHh----hhhccHHHHHHHHHHhh
Q 000237 1256 SVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSM----AKSMTINVMAAVVENAI 1331 (1806)
Q Consensus 1256 ~~~~~q~lid~l~vl~~~~p~~~~~l~~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~----~~~~~~~~~~~~~~~~~ 1331 (1806)
--.-+.++.++ ....++-.+.|.+-+.+|.+...++-...+.|.+.--.+-.+ +++.+.+....++.++.
T Consensus 626 ----Rl~AvkAlt~I--a~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~ 699 (1233)
T KOG1824|consen 626 ----RLTAVKALTLI--AMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELP 699 (1233)
T ss_pred ----HHHHHHHHHHH--HhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhh
Confidence 11234555544 345578888899999999999999999999998765554444 55788899999999999
Q ss_pred cccCCccchhhccchhHHHHHHHh
Q 000237 1332 PMLGDMTSVHARQGAGMLISLLVQ 1355 (1806)
Q Consensus 1332 p~l~~~~~~~~r~ga~~~~~~~~~ 1355 (1806)
|++... ..+.-|-|+.++..+..
T Consensus 700 ~Lises-dlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 700 PLISES-DLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred hhhhHH-HHHHHHHHHHHHHHHHh
Confidence 988854 45666777777776643
No 119
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=96.10 E-value=0.018 Score=77.17 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=99.4
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIE 1521 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~ 1521 (1806)
....+++|..++++.......+.-++|..++|-|||..++.+........ .....+.+.|.| .+++..-.+.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~ 267 (733)
T COG1203 193 EHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAK 267 (733)
T ss_pred CchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHH
Confidence 34559999999988876665544789999999999999888877655442 112256777778 668889999999
Q ss_pred HhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhh---------------------HhhhccccceEEEEcc
Q 000237 1522 KFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKD---------------------ADYLGQLLWNYCILDE 1580 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~d---------------------i~~L~~i~w~~VILDE 1580 (1806)
++++........++|........-... ...+.++++++.... ...+..+....+|+||
T Consensus 268 ~~~~~~~~~~~~~h~~~~~~~~~~~~~-~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 268 EIFGLFSVIGKSLHSSSKEPLLLEPDQ-DILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred hhhcccccccccccccccchhhhcccc-ccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 988544433332355443332211110 111344444333221 0113334456899999
Q ss_pred cccccCh-hhHHHH-HHHHhh--hcceEEeccCCCC
Q 000237 1581 GHIIKNS-KSKITV-AVKQLK--AAHRLILSGTPIQ 1612 (1806)
Q Consensus 1581 aH~IKN~-~Sk~sk-alk~L~--A~~RLlLTGTPIq 1612 (1806)
.|.+-.. .....- .+..+. ....+++|||+-.
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~ 382 (733)
T COG1203 347 VHLYADETMLAALLALLEALAEAGVPVLLMSATLPP 382 (733)
T ss_pred HHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCH
Confidence 9998655 232222 333332 5667899999854
No 120
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.99 E-value=0.05 Score=73.83 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=47.8
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHH-HHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHW-AFEIE 1521 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW-~~Ei~ 1521 (1806)
.+.|+-|.+-.+.+......+...++...+|.|||+.-+.-+.. ... ..+++|.||.. |..|= .+++.
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~---~~~-------~~~vvI~t~T~~Lq~Ql~~~~i~ 313 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLA---QSD-------QRQIIVSVPTKILQDQIMAEEVK 313 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHH---hcC-------CCcEEEEeCcHHHHHHHHHHHHH
Confidence 47899999988777776666666778889999999755433221 110 15899999965 44554 45555
Q ss_pred Hhh
Q 000237 1522 KFI 1524 (1806)
Q Consensus 1522 kf~ 1524 (1806)
.+.
T Consensus 314 ~l~ 316 (820)
T PRK07246 314 AIQ 316 (820)
T ss_pred HHH
Confidence 544
No 121
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=95.82 E-value=0.062 Score=72.12 Aligned_cols=146 Identities=21% Similarity=0.170 Sum_probs=86.3
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHH---HHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVG---HWAFEI 1520 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~---qW~~Ei 1520 (1806)
..++-|.-|---| +.|-|---.+|-|||+.+..-+......+ ..++||+|.. |.. .|...+
T Consensus 82 ~~ydvQliGg~~L------h~G~Iaem~TGeGKTL~a~Lpa~~~al~G---------~~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 82 RHFDVQLIGGMVL------HEGNIAEMRTGEGKTLVATLPAYLNAISG---------RGVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred CcchHHHhhhhhh------ccCccccccCCCCchHHHHHHHHHHHhcC---------CCEEEEcCCHHHHHHHHHHHHHH
Confidence 3455577665433 23446778999999997654443222111 4689999965 554 466666
Q ss_pred HHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHH-----HhhH----hhhccccceEEEEcccccccChhhHH
Q 000237 1521 EKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVV-----RKDA----DYLGQLLWNYCILDEGHIIKNSKSKI 1591 (1806)
Q Consensus 1521 ~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~L-----r~di----~~L~~i~w~~VILDEaH~IKN~~Sk~ 1591 (1806)
.+|+ .+++..+.|......+ .. .-..+|++.|...+ +... +..-+..++++|+||++.+-=-
T Consensus 147 ~~~l---GLtv~~i~gg~~~~~r-~~-~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLID---- 217 (896)
T PRK13104 147 YEFL---GLTVGVIYPDMSHKEK-QE-AYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILID---- 217 (896)
T ss_pred hccc---CceEEEEeCCCCHHHH-HH-HhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhh----
Confidence 6665 4777777665432221 11 22579999997775 3221 1112246899999999986211
Q ss_pred HHHHHHhhhcceEEeccCCCCCChhhHHhhhh
Q 000237 1592 TVAVKQLKAAHRLILSGTPIQNNITDLWSLFD 1623 (1806)
Q Consensus 1592 skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~ 1623 (1806)
.|+.-+++||.+-.. .++|..++
T Consensus 218 -------eArtPLIISg~~~~~--~~~y~~~~ 240 (896)
T PRK13104 218 -------EARTPLIISGAAEDS--SELYIKIN 240 (896)
T ss_pred -------ccCCceeeeCCCccc--hHHHHHHH
Confidence 355668899865322 34554433
No 122
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=95.74 E-value=0.027 Score=72.48 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=84.8
Q ss_pred ccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHH
Q 000237 1441 ELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFE 1519 (1806)
Q Consensus 1441 ~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~E 1519 (1806)
..-.+|-|+|..+|.-+ ..+...++..-+-.|||+.|=..|+.....+ .+++--.| +.|-.|=.+|
T Consensus 125 ~YPF~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---------QRVIYTSPIKALSNQKYRE 191 (1041)
T KOG0948|consen 125 TYPFTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK---------QRVIYTSPIKALSNQKYRE 191 (1041)
T ss_pred CCCcccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc---------CeEEeeChhhhhcchhHHH
Confidence 34568999999999654 4566778888999999999966665544332 46777788 7788888888
Q ss_pred HHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhH----hhhccccceEEEEcccccccChh
Q 000237 1520 IEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDA----DYLGQLLWNYCILDEGHIIKNSK 1588 (1806)
Q Consensus 1520 i~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di----~~L~~i~w~~VILDEaH~IKN~~ 1588 (1806)
+..=++. |..-+|.-. .-+.+.-+|+|-+.+|+.. +.++.+ ..||+||.|++|...
T Consensus 192 l~~EF~D----VGLMTGDVT-------InP~ASCLVMTTEILRsMLYRGSEvmrEV--aWVIFDEIHYMRDkE 251 (1041)
T KOG0948|consen 192 LLEEFKD----VGLMTGDVT-------INPDASCLVMTTEILRSMLYRGSEVMREV--AWVIFDEIHYMRDKE 251 (1041)
T ss_pred HHHHhcc----cceeeccee-------eCCCCceeeeHHHHHHHHHhccchHhhee--eeEEeeeehhccccc
Confidence 7765532 222233211 1246778999999999865 334444 459999999998744
No 123
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.60 E-value=0.035 Score=63.46 Aligned_cols=145 Identities=19% Similarity=0.258 Sum_probs=67.7
Q ss_pred cchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhc
Q 000237 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFID 1525 (1806)
Q Consensus 1446 LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~ 1525 (1806)
.-++|...++.|. ...-.++.-..|.|||+.+++........+ ...+.+|+-|..-.+.+ --|.+
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-------~~~kiii~Rp~v~~~~~----lGflp 69 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEG-------EYDKIIITRPPVEAGED----LGFLP 69 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTT-------S-SEEEEEE-S--TT--------SS-
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhC-------CCcEEEEEecCCCCccc----cccCC
Confidence 3468999998775 222456777999999999999887665432 22466666664422111 11110
Q ss_pred c-------CCceEEE-----EecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHH
Q 000237 1526 V-------SLMSTLQ-----YVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITV 1593 (1806)
Q Consensus 1526 ~-------p~l~vli-----y~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~sk 1593 (1806)
. |.+.++. +.+.. .+...+.+..|-+.+...+|-. .+...+||+||||++. ....-.
T Consensus 70 G~~~eK~~p~~~p~~d~l~~~~~~~----~~~~~~~~~~Ie~~~~~~iRGr-----t~~~~~iIvDEaQN~t--~~~~k~ 138 (205)
T PF02562_consen 70 GDLEEKMEPYLRPIYDALEELFGKE----KLEELIQNGKIEIEPLAFIRGR-----TFDNAFIIVDEAQNLT--PEELKM 138 (205)
T ss_dssp --------TTTHHHHHHHTTTS-TT----CHHHHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG----HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhChH----hHHHHhhcCeEEEEehhhhcCc-----cccceEEEEecccCCC--HHHHHH
Confidence 0 0000000 00111 1111223455666665544431 2445899999999983 334444
Q ss_pred HHHHhhhcceEEeccCCCCCChh
Q 000237 1594 AVKQLKAAHRLILSGTPIQNNIT 1616 (1806)
Q Consensus 1594 alk~L~A~~RLlLTGTPIqNnl~ 1616 (1806)
.+.++..+.+++++|-|.|.+..
T Consensus 139 ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp HHTTB-TT-EEEEEE--------
T ss_pred HHcccCCCcEEEEecCceeecCC
Confidence 56666778999999999887643
No 124
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.55 E-value=0.063 Score=66.92 Aligned_cols=147 Identities=16% Similarity=0.193 Sum_probs=87.0
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cH---HHHHHHHHHhhccCCceEEEEecChhHHHH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LV---GHWAFEIEKFIDVSLMSTLQYVGSAQDRIA 1543 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll---~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~ 1543 (1806)
+=|.-+|.|||..-+.=+..-..+++. ...+.++||+||.- |- .+-...+..|+ .+.+....|+-.-+..
T Consensus 222 ca~A~TGsGKTAAF~lPiLERLlYrPk---~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt---~I~~~L~vGGL~lk~Q 295 (691)
T KOG0338|consen 222 CACAATGSGKTAAFALPILERLLYRPK---KVAATRVLVLVPTRELAIQVHSVTKQLAQFT---DITVGLAVGGLDLKAQ 295 (691)
T ss_pred hheecccCCchhhhHHHHHHHHhcCcc---cCcceeEEEEeccHHHHHHHHHHHHHHHhhc---cceeeeeecCccHHHH
Confidence 456789999985332222221222221 12347899999965 33 45556677775 5888888887765544
Q ss_pred HHhhhcCCcEEEeeHHHHHhhHhhhccc---cceEEEEcccccccCh--hhHHHHHHHHh-hhcceEEeccCCCCCChhh
Q 000237 1544 LREQFDKHNVIITSYDVVRKDADYLGQL---LWNYCILDEGHIIKNS--KSKITVAVKQL-KAAHRLILSGTPIQNNITD 1617 (1806)
Q Consensus 1544 l~~~l~~~dVVITSYe~Lr~di~~L~~i---~w~~VILDEaH~IKN~--~Sk~skalk~L-~A~~RLlLTGTPIqNnl~E 1617 (1806)
-...-...||||+|...+-.++..-..+ ....+|+|||.++-.. ...+...++.. +.+..++.|+|-. ..+.|
T Consensus 296 E~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMt-eeVkd 374 (691)
T KOG0338|consen 296 EAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMT-EEVKD 374 (691)
T ss_pred HHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhH-HHHHH
Confidence 3333357899999998876544332222 3567999999988432 22222222222 3334588899853 44566
Q ss_pred HHhh
Q 000237 1618 LWSL 1621 (1806)
Q Consensus 1618 LwSL 1621 (1806)
|.++
T Consensus 375 L~sl 378 (691)
T KOG0338|consen 375 LASL 378 (691)
T ss_pred HHHh
Confidence 6654
No 125
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.26 E-value=0.17 Score=69.77 Aligned_cols=38 Identities=26% Similarity=0.181 Sum_probs=31.0
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQA 1481 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqa 1481 (1806)
.+.||-|.+-.+.+......+.+.++-..+|.|||+--
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaY 293 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAY 293 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHH
Confidence 47899999988888777767777777889999999754
No 126
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=95.24 E-value=0.043 Score=73.96 Aligned_cols=152 Identities=22% Similarity=0.255 Sum_probs=91.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCcc--CCCcEEEEec-cccHHHHHHHHHHhhccCCceEEEEecChhH
Q 000237 1464 KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIE--EIHPSLIICP-STLVGHWAFEIEKFIDVSLMSTLQYVGSAQD 1540 (1806)
Q Consensus 1464 ~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~--~~~ptLIVcP-~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~ 1540 (1806)
..+-++|..+|.|||..++--+......+....+.. ...+..-|+| ++|+..|...|.++...-.++|.-..|...-
T Consensus 325 ~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l 404 (1674)
T KOG0951|consen 325 DENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL 404 (1674)
T ss_pred cCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc
Confidence 345699999999999988665554333222211111 1145677888 8899999999999986556677767766432
Q ss_pred HHHHHhhhcCCcEEEeeHHHH---Hhh-HhhhccccceEEEEcccccc---cChh--hHHHHHHHHh---hhc-ceEEec
Q 000237 1541 RIALREQFDKHNVIITSYDVV---RKD-ADYLGQLLWNYCILDEGHII---KNSK--SKITVAVKQL---KAA-HRLILS 1607 (1806)
Q Consensus 1541 R~~l~~~l~~~dVVITSYe~L---r~d-i~~L~~i~w~~VILDEaH~I---KN~~--Sk~skalk~L---~A~-~RLlLT 1607 (1806)
. ..++...+|+++|-+.. .+. .+.-...-+..+|+||.|.+ |.|. |-..+..++. ... +-++||
T Consensus 405 ~---~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLS 481 (1674)
T KOG0951|consen 405 G---KEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLS 481 (1674)
T ss_pred h---hhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeec
Confidence 1 23556778999986543 322 22111223678999999999 3322 1222222322 223 346799
Q ss_pred cCCCCCChhhHHh
Q 000237 1608 GTPIQNNITDLWS 1620 (1806)
Q Consensus 1608 GTPIqNnl~ELwS 1620 (1806)
||-- |..|.-+
T Consensus 482 ATLP--Ny~DV~~ 492 (1674)
T KOG0951|consen 482 ATLP--NYEDVAS 492 (1674)
T ss_pred ccCC--chhhhHH
Confidence 9953 3344444
No 127
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=95.20 E-value=0.11 Score=67.14 Aligned_cols=165 Identities=19% Similarity=0.203 Sum_probs=98.2
Q ss_pred cCcccccccchHHHHHHHHHHHHhhc-----CCce-EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEe-cc
Q 000237 1438 LGTELKVTLRRYQQEGINWLAFLKRF-----KLHG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIIC-PS 1510 (1806)
Q Consensus 1438 ip~~lk~~LRpYQ~eGV~wL~~l~~~-----~~gG-ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVc-P~ 1510 (1806)
+|..-...|-.-|.++|-|..+.... .+.| +++|.-|.||-.+..++|...+..++ ++.|.+. ..
T Consensus 257 lP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR--------KrAlW~SVSs 328 (1300)
T KOG1513|consen 257 LPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR--------KRALWFSVSS 328 (1300)
T ss_pred cccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc--------ceeEEEEecc
Confidence 45545667888999999998765432 1224 89999999998888888765544332 4555554 45
Q ss_pred ccHHHHHHHHHHhhccCCceEEEEecChhHHH-HHHhhhcCCcEEEeeHHHHHhh--------Hhhhccc------cc-e
Q 000237 1511 TLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRI-ALREQFDKHNVIITSYDVVRKD--------ADYLGQL------LW-N 1574 (1806)
Q Consensus 1511 SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~-~l~~~l~~~dVVITSYe~Lr~d--------i~~L~~i------~w-~ 1574 (1806)
.|...=++.+.... .+.+.|..+..-..... ...+..-+-.|+++||..+--. ...|+++ .| .
T Consensus 329 DLKfDAERDL~Dig-A~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feG 407 (1300)
T KOG1513|consen 329 DLKFDAERDLRDIG-ATGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEG 407 (1300)
T ss_pred ccccchhhchhhcC-CCCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccce
Confidence 56666666666553 34444443221110000 0001112447999999887422 1122221 12 5
Q ss_pred EEEEcccccccC-------hhhHHHHHHHHh----hhcceEEeccCCC
Q 000237 1575 YCILDEGHIIKN-------SKSKITVAVKQL----KAAHRLILSGTPI 1611 (1806)
Q Consensus 1575 ~VILDEaH~IKN-------~~Sk~skalk~L----~A~~RLlLTGTPI 1611 (1806)
+||+||||+.|| ..++.-+.+..| .-.+.+.-|+|--
T Consensus 408 vIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGA 455 (1300)
T KOG1513|consen 408 VIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGA 455 (1300)
T ss_pred eEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCC
Confidence 899999999999 456666766655 3344555777754
No 128
>PRK10536 hypothetical protein; Provisional
Probab=95.09 E-value=0.084 Score=62.24 Aligned_cols=148 Identities=16% Similarity=0.202 Sum_probs=82.6
Q ss_pred cchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHH---------
Q 000237 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHW--------- 1516 (1806)
Q Consensus 1446 LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW--------- 1516 (1806)
.-..|...+.|+.. +.-.++--+.|.|||..++++........ . -..+||+-+.+-..+
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~-------~-~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHK-------D-VDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcC-------C-eeEEEEeCCCCCchhhhCcCCCCH
Confidence 45577777777642 33567778999999999999887543221 1 123444433332111
Q ss_pred HHHHHHhhccCCceEE-EEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHH
Q 000237 1517 AFEIEKFIDVSLMSTL-QYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAV 1595 (1806)
Q Consensus 1517 ~~Ei~kf~~~p~l~vl-iy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skal 1595 (1806)
.+.+.-|+. |-...+ .+.|...-.. .. ......|.|.+...+|.. .+.-.+||+||+|++.- ......+
T Consensus 128 ~eK~~p~~~-pi~D~L~~~~~~~~~~~-~~-~~~~~~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~~--~~~k~~l 197 (262)
T PRK10536 128 AEKFAPYFR-PVYDVLVRRLGASFMQY-CL-RPEIGKVEIAPFAYMRGR-----TFENAVVILDEAQNVTA--AQMKMFL 197 (262)
T ss_pred HHHHHHHHH-HHHHHHHHHhChHHHHH-HH-HhccCcEEEecHHHhcCC-----cccCCEEEEechhcCCH--HHHHHHH
Confidence 111111110 000000 0011111110 00 012456777777766642 23447999999999843 5555667
Q ss_pred HHhhhcceEEeccCCCCCCh
Q 000237 1596 KQLKAAHRLILSGTPIQNNI 1615 (1806)
Q Consensus 1596 k~L~A~~RLlLTGTPIqNnl 1615 (1806)
.++..+.+++++|-|-|.+.
T Consensus 198 tR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 198 TRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred hhcCCCCEEEEeCChhhccC
Confidence 78889999999999987764
No 129
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=95.04 E-value=0.11 Score=64.80 Aligned_cols=160 Identities=18% Similarity=0.175 Sum_probs=95.7
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf 1523 (1806)
++-+-|...+.=+. .+...+-+.-+|.|||+--+--........+. .....-.+|||||.- |.-|-..|.++.
T Consensus 104 ~MT~VQ~~ti~pll----~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~--~~r~~~~vlIi~PTRELA~Q~~~eak~L 177 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLL----EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKF--KPRNGTGVLIICPTRELAMQIFAEAKEL 177 (543)
T ss_pred chhHHHHhhcCccC----CCccceeeeccCCCceeeehhHHHHHHHhccc--CCCCCeeEEEecccHHHHHHHHHHHHHH
Confidence 45555655554321 23356778899999997543333222222111 111225689999965 667777776665
Q ss_pred hcc-CCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccc---cceEEEEcccccccC--hhhHHHHHHHH
Q 000237 1524 IDV-SLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQL---LWNYCILDEGHIIKN--SKSKITVAVKQ 1597 (1806)
Q Consensus 1524 ~~~-p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i---~w~~VILDEaH~IKN--~~Sk~skalk~ 1597 (1806)
... +...+.+..|+...+..........+++|+|-..+--.++.-..+ .-.++|+|||.+|-. ..--+-+.++.
T Consensus 178 l~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~ 257 (543)
T KOG0342|consen 178 LKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKI 257 (543)
T ss_pred HhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHh
Confidence 533 367777777776555444444457899999999887555432221 236899999999853 22333344444
Q ss_pred hh-hcceEEeccCC
Q 000237 1598 LK-AAHRLILSGTP 1610 (1806)
Q Consensus 1598 L~-A~~RLlLTGTP 1610 (1806)
+. -+..++.|+|-
T Consensus 258 lpk~rqt~LFSAT~ 271 (543)
T KOG0342|consen 258 LPKQRQTLLFSATQ 271 (543)
T ss_pred ccccceeeEeeCCC
Confidence 43 34458888884
No 130
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=95.01 E-value=0.083 Score=66.43 Aligned_cols=143 Identities=17% Similarity=0.237 Sum_probs=89.2
Q ss_pred EEEcCCCCchHHHH-HHHHHHhHHHhhhc-----CCccCCC-cEEEEeccc-cHHHHHHHHHHhhccCCceEEEEecChh
Q 000237 1468 ILCDDMGLGKTLQA-SAIVASDIAERRAS-----NSIEEIH-PSLIICPST-LVGHWAFEIEKFIDVSLMSTLQYVGSAQ 1539 (1806)
Q Consensus 1468 ILADdMGLGKTlqa-Ialia~l~~~r~~~-----~~~~~~~-ptLIVcP~S-Ll~qW~~Ei~kf~~~p~l~vliy~Gs~~ 1539 (1806)
+=+.|+|.|||+.- |-++..+....... ....... -.|||+|.. |..|-.+.|...+..+.+++..+.|+-.
T Consensus 223 lGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLa 302 (731)
T KOG0347|consen 223 LGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLA 302 (731)
T ss_pred ccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhH
Confidence 33579999999742 33333111100000 0001111 269999955 8889999999988888999999999865
Q ss_pred HHHHHHhhhcCCcEEEeeHHHHHhhHh----hhccc-cceEEEEccccccc--ChhhHHHHHHHHhh------hcceEEe
Q 000237 1540 DRIALREQFDKHNVIITSYDVVRKDAD----YLGQL-LWNYCILDEGHIIK--NSKSKITVAVKQLK------AAHRLIL 1606 (1806)
Q Consensus 1540 ~R~~l~~~l~~~dVVITSYe~Lr~di~----~L~~i-~w~~VILDEaH~IK--N~~Sk~skalk~L~------A~~RLlL 1606 (1806)
....-+-.-...+|||+|-..+...+. .+..+ ...++|+||+.++- ..-.-+++.++.|. -+-.++.
T Consensus 303 vqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVF 382 (731)
T KOG0347|consen 303 VQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVF 382 (731)
T ss_pred HHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEE
Confidence 433322222378999999888865443 23333 25789999999883 33344555566653 2234888
Q ss_pred ccCC
Q 000237 1607 SGTP 1610 (1806)
Q Consensus 1607 TGTP 1610 (1806)
|+|-
T Consensus 383 SATl 386 (731)
T KOG0347|consen 383 SATL 386 (731)
T ss_pred EEEe
Confidence 9885
No 131
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.84 E-value=0.058 Score=69.18 Aligned_cols=112 Identities=23% Similarity=0.294 Sum_probs=84.6
Q ss_pred chhhhHHHHHHHHhhcCChhhHHHHHHHHHhhccCCceeeecccccchhhhhhhh----hhhHHhHHhhHHHHHHccCCC
Q 000237 528 PVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVR----QEMLHGLLGYVLPACRAGLED 603 (1806)
Q Consensus 528 PVRET~AQ~Lgall~~m~~~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKYlvAVR----~dll~~lL~~Vl~a~~~GL~D 603 (1806)
=||+|.|-+.|++..|+--+.+...++. +-..++.|++||-| ||-.--+= --.|+ -|..++.++-+||.|
T Consensus 491 YVRnttarafavvasalgip~llpfLka--vc~SkkSwqaRhTg---IkivqqIail~Gcsvlp-hl~~lv~ii~~gl~D 564 (1172)
T KOG0213|consen 491 YVRNTTARAFAVVASALGIPALLPFLKA--VCGSKKSWQARHTG---IKIVQQIAILSGCSVLP-HLKPLVKIIEHGLKD 564 (1172)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHH--Hhccccchhhhchh---hHHHHHHHHHhcchhhh-hhHHHHHHHHHhhcc
Confidence 4999999999999999987744443333 33455789999986 44321100 00112 567788899999999
Q ss_pred CCchHHHhHHhhhhhhHHHHHhhchhhHHHHHHHHHHhhcCC
Q 000237 604 PDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDL 645 (1806)
Q Consensus 604 ~DDDVraVAA~~L~Pia~~~v~~~~~~l~~il~~LWd~L~~l 645 (1806)
.---||-++|-+|--+|+.---...+..++++..||.-....
T Consensus 565 e~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~h 606 (1172)
T KOG0213|consen 565 EQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQH 606 (1172)
T ss_pred cchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHc
Confidence 999999999999998888776788889999999999877654
No 132
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.76 E-value=0.35 Score=60.25 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=84.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf 1523 (1806)
..-|-|...+-.++ .+...+.-.-+|.|||+.-+.=+......+.... .+..-..|||.|.- |..|-.+=+..|
T Consensus 28 ~mTpVQa~tIPlll----~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~-~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 28 KMTPVQAATIPLLL----KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKT-PPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred ccCHHHHhhhHHHh----cCCceEEEcCCCCCchhhHHHHHHHHHHhhccCC-CccceeEEEecCcHHHHHHHHHHHHHH
Confidence 45678888886654 2334566678999999865555555444333221 11113579999955 545544443333
Q ss_pred hcc-CCceEEEEecChhHHHHHHh-hhcCCcEEEeeHHHHHhh----HhhhccccceEEEEcccccccC
Q 000237 1524 IDV-SLMSTLQYVGSAQDRIALRE-QFDKHNVIITSYDVVRKD----ADYLGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1524 ~~~-p~l~vliy~Gs~~~R~~l~~-~l~~~dVVITSYe~Lr~d----i~~L~~i~w~~VILDEaH~IKN 1586 (1806)
... +.++...+.|+..-...+.. .-...+|+|.|-..+... .+.+.-..-..+|+|||.++-.
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 322 77888888888654433222 123567999997766433 3445545678999999999854
No 133
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.74 E-value=0.18 Score=67.00 Aligned_cols=152 Identities=18% Similarity=0.114 Sum_probs=101.2
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIE 1521 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~ 1521 (1806)
...|-+-|+.+++-+..........+|.--+|.|||-.=+-+++.....+ +.+||++| -+++.|-.+.|+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---------kqvLvLVPEI~Ltpq~~~rf~ 266 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---------KQVLVLVPEIALTPQLLARFK 266 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---------CEEEEEeccccchHHHHHHHH
Confidence 35788899999988765541122348889999999987777777666543 57999999 679999999999
Q ss_pred HhhccCCceEEEEecC--hhHHHHHHh--hhcCCcEEEeeHHHHHhhHhhhccccceEEEEccccc--ccChhhHHHHH-
Q 000237 1522 KFIDVSLMSTLQYVGS--AQDRIALRE--QFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHI--IKNSKSKITVA- 1594 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs--~~~R~~l~~--~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~--IKN~~Sk~ska- 1594 (1806)
..++ .++.+++.. +.+|...-. ..+...|||=|-..+---.. +-.+||+||=|. +|..+...+.|
T Consensus 267 ~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 267 ARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred HHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchh-----hccEEEEeccccccccCCcCCCcCHH
Confidence 9985 445555543 334432222 23677899988776643222 347999999995 45555444432
Q ss_pred -HHHhh----hcceEEeccCCC
Q 000237 1595 -VKQLK----AAHRLILSGTPI 1611 (1806)
Q Consensus 1595 -lk~L~----A~~RLlLTGTPI 1611 (1806)
+..++ .--.++-|+||-
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCC
Confidence 22222 223577799995
No 134
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.69 E-value=0.12 Score=64.68 Aligned_cols=61 Identities=25% Similarity=0.159 Sum_probs=41.4
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST 1511 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S 1511 (1806)
..+|-|..-..-+......++||+|--..|.|||+.-++++.+...+.+. ...-||-|..+
T Consensus 16 ~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~------~~~KliYCSRT 76 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD------EHRKLIYCSRT 76 (755)
T ss_pred ccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc------ccceEEEecCc
Confidence 46777855443344445678899999999999999999998876554432 13345666543
No 135
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.59 E-value=0.15 Score=67.30 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=64.4
Q ss_pred ccCcccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhc---------C-------Cc--
Q 000237 1437 KLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRAS---------N-------SI-- 1498 (1806)
Q Consensus 1437 ~ip~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~---------~-------~~-- 1498 (1806)
-+|+.+-.++|+-|+.-..-+....+...+|+|-+.+|.|||+.-||-..+...+.+.. . ..
T Consensus 13 Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~ 92 (945)
T KOG1132|consen 13 GVPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDS 92 (945)
T ss_pred CceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccC
Confidence 46777888899999998888888888888999999999999999888765433322200 0 00
Q ss_pred --------cC------CCcEEEEecccc--HHHHHHHHHHhh
Q 000237 1499 --------EE------IHPSLIICPSTL--VGHWAFEIEKFI 1524 (1806)
Q Consensus 1499 --------~~------~~ptLIVcP~SL--l~qW~~Ei~kf~ 1524 (1806)
.+ -.|.++.+..+- +.|=.+|+.+..
T Consensus 93 ~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 93 GGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred CCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 00 156788888665 788999999875
No 136
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.59 E-value=0.13 Score=64.66 Aligned_cols=159 Identities=16% Similarity=0.197 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCc-EEEEeccc-cHHHHHHHHHHhhc
Q 000237 1448 RYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHP-SLIICPST-LVGHWAFEIEKFID 1525 (1806)
Q Consensus 1448 pYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~p-tLIVcP~S-Ll~qW~~Ei~kf~~ 1525 (1806)
.-|..+|--+. .+...++-..+|.|||+.-+.=+..........-+ ...++ .|||+|.- |..|-.+-+++...
T Consensus 162 sVQkq~IP~lL----~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~-Rs~G~~ALVivPTREL~~Q~y~~~qKLl~ 236 (708)
T KOG0348|consen 162 SVQKQAIPVLL----EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ-RSDGPYALVIVPTRELALQIYETVQKLLK 236 (708)
T ss_pred hHhhcchhhhh----cCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc-ccCCceEEEEechHHHHHHHHHHHHHHhc
Confidence 45666664443 25556888999999998654444332221111100 11133 48999955 77888888888763
Q ss_pred c-CCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccc---cceEEEEcccccccC-----hhhHHHHHHH
Q 000237 1526 V-SLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQL---LWNYCILDEGHIIKN-----SKSKITVAVK 1596 (1806)
Q Consensus 1526 ~-p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i---~w~~VILDEaH~IKN-----~~Sk~skalk 1596 (1806)
. ..+.+....|+.+........-...+|+|.|-..+...+..-..+ ...++|+|||.+|-. .-+++.+++.
T Consensus 237 ~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~ 316 (708)
T KOG0348|consen 237 PFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVH 316 (708)
T ss_pred CceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHh
Confidence 1 223333455655433222222245689999999887665443333 356899999999854 3344555553
Q ss_pred Hh-h----------hcceEEeccCCC
Q 000237 1597 QL-K----------AAHRLILSGTPI 1611 (1806)
Q Consensus 1597 ~L-~----------A~~RLlLTGTPI 1611 (1806)
.+ + -.-+++||+|--
T Consensus 317 ~~~~~e~~~~~lp~q~q~mLlSATLt 342 (708)
T KOG0348|consen 317 SIQNAECKDPKLPHQLQNMLLSATLT 342 (708)
T ss_pred hccchhcccccccHHHHhHhhhhhhH
Confidence 32 1 133578888853
No 137
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=94.58 E-value=0.26 Score=64.99 Aligned_cols=154 Identities=17% Similarity=0.112 Sum_probs=91.9
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH----HHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV----GHWAF 1518 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl----~qW~~ 1518 (1806)
....++-|.-|..-|. .|-|.=-.+|-|||+++...+......+ +.+-||+|...+ .+|..
T Consensus 76 g~r~ydvQlig~l~Ll------~G~VaEM~TGEGKTLvA~l~a~l~AL~G---------~~VhvvT~NdyLA~RDae~m~ 140 (764)
T PRK12326 76 GLRPFDVQLLGALRLL------AGDVIEMATGEGKTLAGAIAAAGYALQG---------RRVHVITVNDYLARRDAEWMG 140 (764)
T ss_pred CCCcchHHHHHHHHHh------CCCcccccCCCCHHHHHHHHHHHHHHcC---------CCeEEEcCCHHHHHHHHHHHH
Confidence 3455667887775543 2445556779999998865554333221 578899997755 45777
Q ss_pred HHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHH-----HHHhhH----hhhccccceEEEEcccccccChhh
Q 000237 1519 EIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYD-----VVRKDA----DYLGQLLWNYCILDEGHIIKNSKS 1589 (1806)
Q Consensus 1519 Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe-----~Lr~di----~~L~~i~w~~VILDEaH~IKN~~S 1589 (1806)
.+.+|+ .+++....+...... +...-.+||+-+|-. .+|... +......++++|+||+..+-=-
T Consensus 141 ~ly~~L---GLsvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLID-- 213 (764)
T PRK12326 141 PLYEAL---GLTVGWITEESTPEE--RRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVD-- 213 (764)
T ss_pred HHHHhc---CCEEEEECCCCCHHH--HHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheec--
Confidence 777775 577777766543221 222336788777743 344322 3334556999999999865210
Q ss_pred HHHHHHHHhhhcceEEeccCCCC-CChhhHHhhhhhhCC
Q 000237 1590 KITVAVKQLKAAHRLILSGTPIQ-NNITDLWSLFDFLMP 1627 (1806)
Q Consensus 1590 k~skalk~L~A~~RLlLTGTPIq-Nnl~ELwSLL~FL~P 1627 (1806)
.|+.-+++||.+-. +.....+.+..-|.+
T Consensus 214 ---------eArtPLiISg~~~~~~~y~~~~~~v~~L~~ 243 (764)
T PRK12326 214 ---------EALVPLVLAGSTPGEAPRGEIAELVRRLRE 243 (764)
T ss_pred ---------cccCceeeeCCCcchhHHHHHHHHHHhcCc
Confidence 46677888886533 233334444444444
No 138
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.51 E-value=0.031 Score=50.03 Aligned_cols=51 Identities=29% Similarity=0.354 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhhChHhHHHHHHhhhhccc----CCChhHHHHHHHHHHHH
Q 000237 21 QATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLR----SKSWDTRVAAAHAIGAI 71 (1806)
Q Consensus 21 ~~~R~tAA~Qlgdiak~hP~el~~LL~rv~~~Lr----Sk~WdTRvAAa~Aig~I 71 (1806)
+.+|.+|+.-||.++...|+.+...+..++|.|. +.+-+.|.+|+.|+|.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999999999999876666666554 55559999999999976
No 139
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.48 E-value=0.047 Score=43.79 Aligned_cols=30 Identities=30% Similarity=0.571 Sum_probs=27.3
Q ss_pred hhHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 000237 1288 LLPCIFKCVCHSHVSVRLAASRCITSMAKS 1317 (1806)
Q Consensus 1288 llp~~~~~l~~~~~~vR~~aa~c~a~~~~~ 1317 (1806)
++|.++.+++++..-||++|++|++.|+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999976
No 140
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=94.40 E-value=0.2 Score=67.42 Aligned_cols=133 Identities=19% Similarity=0.124 Sum_probs=81.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH-H---HHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV-G---HWAFEI 1520 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl-~---qW~~Ei 1520 (1806)
..++-|.-|---| +.|-|-=-.+|-|||+++...+......+ ..+-||+|...+ . +|...+
T Consensus 82 ~~ydVQliGg~~L------h~G~iaEM~TGEGKTLvA~l~a~l~al~G---------~~VhvvT~ndyLA~RD~e~m~~l 146 (913)
T PRK13103 82 RHFDVQLIGGMTL------HEGKIAEMRTGEGKTLVGTLAVYLNALSG---------KGVHVVTVNDYLARRDANWMRPL 146 (913)
T ss_pred CcchhHHHhhhHh------ccCccccccCCCCChHHHHHHHHHHHHcC---------CCEEEEeCCHHHHHHHHHHHHHH
Confidence 4455677765333 23446667899999997643332222111 578889997644 3 455555
Q ss_pred HHhhccCCceEEEEecChh--HHHHHHhhhcCCcEEEeeHHHH-----HhhHh----hhccccceEEEEcccccccChhh
Q 000237 1521 EKFIDVSLMSTLQYVGSAQ--DRIALREQFDKHNVIITSYDVV-----RKDAD----YLGQLLWNYCILDEGHIIKNSKS 1589 (1806)
Q Consensus 1521 ~kf~~~p~l~vliy~Gs~~--~R~~l~~~l~~~dVVITSYe~L-----r~di~----~L~~i~w~~VILDEaH~IKN~~S 1589 (1806)
.+|+ .+++..+.+... +|.. .-.+||++.|...+ |.... ..-+..++++|+||+|.+-=-
T Consensus 147 ~~~l---Gl~v~~i~~~~~~~err~----~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLID-- 217 (913)
T PRK13103 147 YEFL---GLSVGIVTPFQPPEEKRA----AYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILID-- 217 (913)
T ss_pred hccc---CCEEEEECCCCCHHHHHH----HhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheecc--
Confidence 5554 577877766542 3332 23489999997775 43322 233467899999999987211
Q ss_pred HHHHHHHHhhhcceEEeccCC
Q 000237 1590 KITVAVKQLKAAHRLILSGTP 1610 (1806)
Q Consensus 1590 k~skalk~L~A~~RLlLTGTP 1610 (1806)
.|+.-+++||.+
T Consensus 218 ---------EArtPLIISg~~ 229 (913)
T PRK13103 218 ---------EARTPLIISGQA 229 (913)
T ss_pred ---------ccCCceeecCCC
Confidence 355568898854
No 141
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=94.22 E-value=0.32 Score=57.87 Aligned_cols=123 Identities=16% Similarity=0.064 Sum_probs=69.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH----HHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV----GHWA 1517 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl----~qW~ 1517 (1806)
+...+++-|.-|+-.| ..|-|.=-.+|=|||+++.... .+..... .++=||+...-+ .+|.
T Consensus 74 ~g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a-~~~AL~G--------~~V~vvT~NdyLA~RD~~~~ 138 (266)
T PF07517_consen 74 LGLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPA-ALNALQG--------KGVHVVTSNDYLAKRDAEEM 138 (266)
T ss_dssp TS----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHH-HHHHTTS--------S-EEEEESSHHHHHHHHHHH
T ss_pred cCCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHH-HHHHHhc--------CCcEEEeccHHHhhccHHHH
Confidence 3445566677666333 2234777899999999885443 3332211 567777875544 4688
Q ss_pred HHHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhH---------hhhccccceEEEEcccccc
Q 000237 1518 FEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDA---------DYLGQLLWNYCILDEGHII 1584 (1806)
Q Consensus 1518 ~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di---------~~L~~i~w~~VILDEaH~I 1584 (1806)
..|-+++ .+++....+..... .+...-.+||+-+|-..+..|. .......++++|+||+..+
T Consensus 139 ~~~y~~L---Glsv~~~~~~~~~~--~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 139 RPFYEFL---GLSVGIITSDMSSE--ERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHHHHHT---T--EEEEETTTEHH--HHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred HHHHHHh---hhccccCccccCHH--HHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 8888887 46666655543211 1122335689888876665431 1112356899999998754
No 142
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=94.14 E-value=0.27 Score=66.10 Aligned_cols=147 Identities=20% Similarity=0.144 Sum_probs=85.8
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHH---HHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGH---WAFE 1519 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~q---W~~E 1519 (1806)
-..++-|.-|.--| +.|-|.--.+|-|||+.+...+......+ ..+-||+|.. |..+ |...
T Consensus 80 ~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~l~aL~G---------~~V~IvTpn~yLA~rd~e~~~~ 144 (830)
T PRK12904 80 MRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAYLNALTG---------KGVHVVTVNDYLAKRDAEWMGP 144 (830)
T ss_pred CCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHHHHHHcC---------CCEEEEecCHHHHHHHHHHHHH
Confidence 34556677766333 23457778999999997654443212111 3466999966 4444 5555
Q ss_pred HHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHh-----hH----hhhccccceEEEEcccccccChhhH
Q 000237 1520 IEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRK-----DA----DYLGQLLWNYCILDEGHIIKNSKSK 1590 (1806)
Q Consensus 1520 i~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~-----di----~~L~~i~w~~VILDEaH~IKN~~Sk 1590 (1806)
+.+|+ .+++....|......+ +.. -..+|++.|...+.. .. +.+....++++|+||+..+-=-
T Consensus 145 l~~~L---Glsv~~i~~~~~~~er-~~~-y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLID--- 216 (830)
T PRK12904 145 LYEFL---GLSVGVILSGMSPEER-REA-YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILID--- 216 (830)
T ss_pred HHhhc---CCeEEEEcCCCCHHHH-HHh-cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheec---
Confidence 55554 5777777765332221 111 247999999766632 21 2233456899999999876211
Q ss_pred HHHHHHHhhhcceEEeccCCCCCChhhHHhhhh
Q 000237 1591 ITVAVKQLKAAHRLILSGTPIQNNITDLWSLFD 1623 (1806)
Q Consensus 1591 ~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~ 1623 (1806)
.|+.-+++||.+-.+ .++|..++
T Consensus 217 --------eArtpLiiSg~~~~~--~~~y~~~~ 239 (830)
T PRK12904 217 --------EARTPLIISGPAEDS--SELYKRAN 239 (830)
T ss_pred --------cCCCceeeECCCCcc--cHHHHHHH
Confidence 345567888765322 34555444
No 143
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.12 E-value=0.16 Score=51.64 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=66.0
Q ss_pred HHHHHHHhhccCChhhhHHHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHH---HHHHhhcccCCccchhh
Q 000237 1266 NIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAA---VVENAIPMLGDMTSVHA 1342 (1806)
Q Consensus 1266 ~l~vl~~~~p~~~~~l~~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~---~~~~~~p~l~~~~~~~~ 1342 (1806)
+|--|.+++=.+.....+.+-.++|.++.|+..+..-|||+|..|+-.|+++...+.+.. +.+.+.-.+.|. +...
T Consensus 6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~-d~~V 84 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP-DENV 84 (97)
T ss_pred HHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chhH
Confidence 344556666677777888889999999999999999999999999999999988877553 333334444444 3456
Q ss_pred ccchhHHHHHHHh
Q 000237 1343 RQGAGMLISLLVQ 1355 (1806)
Q Consensus 1343 r~ga~~~~~~~~~ 1355 (1806)
|+|| +++.+++.
T Consensus 85 r~~a-~~Ld~llk 96 (97)
T PF12755_consen 85 RSAA-ELLDRLLK 96 (97)
T ss_pred HHHH-HHHHHHhc
Confidence 7777 77777653
No 144
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.06 E-value=0.55 Score=53.29 Aligned_cols=127 Identities=18% Similarity=0.158 Sum_probs=65.4
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI 1524 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~ 1524 (1806)
+|-+-|++++..+.. ....-.++.=..|.|||...-.+...+.. .. .++++++|..-.. .++.+-+
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~-~g--------~~v~~~apT~~Aa---~~L~~~~ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEA-AG--------KRVIGLAPTNKAA---KELREKT 66 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHH-TT----------EEEEESSHHHH---HHHHHHH
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHh-CC--------CeEEEECCcHHHH---HHHHHhh
Confidence 477899999987742 22334577778999999865554433222 11 4678888865331 1122222
Q ss_pred ccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhc------cccceEEEEcccccccChhhHHHHHHHHh
Q 000237 1525 DVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLG------QLLWNYCILDEGHIIKNSKSKITVAVKQL 1598 (1806)
Q Consensus 1525 ~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~------~i~w~~VILDEaH~IKN~~Sk~skalk~L 1598 (1806)
+ +-..|...+........ ....+++|+||+..+.+ ......+..+
T Consensus 67 ~---------------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~--~~~~~ll~~~ 117 (196)
T PF13604_consen 67 G---------------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS--RQLARLLRLA 117 (196)
T ss_dssp T---------------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH--HHHHHHHHHS
T ss_pred C---------------------------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccCH--HHHHHHHHHH
Confidence 1 11112222211111100 23457999999999843 3344444444
Q ss_pred hh-cceEEeccCCCCCC
Q 000237 1599 KA-AHRLILSGTPIQNN 1614 (1806)
Q Consensus 1599 ~A-~~RLlLTGTPIqNn 1614 (1806)
.. ..++++.|-|-|-.
T Consensus 118 ~~~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 118 KKSGAKLILVGDPNQLP 134 (196)
T ss_dssp -T-T-EEEEEE-TTSHH
T ss_pred HhcCCEEEEECCcchhc
Confidence 43 67999999987643
No 145
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=94.06 E-value=0.4 Score=57.73 Aligned_cols=184 Identities=20% Similarity=0.184 Sum_probs=109.3
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
..||-|+++++-.. .+...+|.-.+|-||++.- - +...-. -+-.||||| -+|+..-.-.++..
T Consensus 94 kfrplq~~ain~~m----a~ed~~lil~tgggkslcy---q--lpal~a-------dg~alvi~plislmedqil~lkql 157 (695)
T KOG0353|consen 94 KFRPLQLAAINATM----AGEDAFLILPTGGGKSLCY---Q--LPALCA-------DGFALVICPLISLMEDQILQLKQL 157 (695)
T ss_pred hcChhHHHHhhhhh----ccCceEEEEeCCCccchhh---h--hhHHhc-------CCceEeechhHHHHHHHHHHHHHh
Confidence 47999999998643 3445688889999999632 1 111000 067899999 56776555555554
Q ss_pred hccCCceEEEEecChhHHHH-HHh----hhcCCcEEEeeHHHHHhhHh-------hhccccceEEEEcccccccC---hh
Q 000237 1524 IDVSLMSTLQYVGSAQDRIA-LRE----QFDKHNVIITSYDVVRKDAD-------YLGQLLWNYCILDEGHIIKN---SK 1588 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~-l~~----~l~~~dVVITSYe~Lr~di~-------~L~~i~w~~VILDEaH~IKN---~~ 1588 (1806)
. -+-..+ -..+.++..+ ... .-..+..+.+|.+.+.+... .+....|.++-+||.|-... .-
T Consensus 158 g--i~as~l-nansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdf 234 (695)
T KOG0353|consen 158 G--IDASML-NANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDF 234 (695)
T ss_pred C--cchhhc-cCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCccc
Confidence 3 111111 1222222222 222 22456678888887754432 34445688999999886421 11
Q ss_pred hHHHHHH----HHhhhcceEEeccCCCCCChhhHHhhhh----------hhCCCC-------CCchhHHHHHhccchhhc
Q 000237 1589 SKITVAV----KQLKAAHRLILSGTPIQNNITDLWSLFD----------FLMPGF-------LGTERQFQATYGKPLVAA 1647 (1806)
Q Consensus 1589 Sk~skal----k~L~A~~RLlLTGTPIqNnl~ELwSLL~----------FL~Pg~-------Lgt~~~F~~~f~kPi~~~ 1647 (1806)
..-++++ ++++....++||+|...|-+.|.-.++. |=+|++ -|+.++|.+...+.|...
T Consensus 235 r~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~ 314 (695)
T KOG0353|consen 235 RPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGD 314 (695)
T ss_pred CcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccc
Confidence 1223333 3445666799999999888777666553 234442 367788888777766543
No 146
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=93.97 E-value=0.26 Score=66.44 Aligned_cols=146 Identities=18% Similarity=0.141 Sum_probs=87.4
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cH---HHHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LV---GHWAFEI 1520 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll---~qW~~Ei 1520 (1806)
..++-|.-|---| +.|-|.--.+|-|||+.+..-+.. ..... ..+.||+|.. |. ..|...+
T Consensus 82 ~~ydVQliGgl~L------~~G~IaEm~TGEGKTL~a~lp~~l-~al~g--------~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 82 RHFDVQLLGGMVL------DSNRIAEMRTGEGKTLTATLPAYL-NALTG--------KGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred CcCchHHhcchHh------cCCccccccCCCCchHHHHHHHHH-HHhcC--------CCEEEEeCCHHHHHHHHHHHHHH
Confidence 4455677665333 234466679999999976443322 11111 4689999965 44 5688889
Q ss_pred HHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHH-----HHhh----HhhhccccceEEEEcccccccChhhHH
Q 000237 1521 EKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDV-----VRKD----ADYLGQLLWNYCILDEGHIIKNSKSKI 1591 (1806)
Q Consensus 1521 ~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~-----Lr~d----i~~L~~i~w~~VILDEaH~IKN~~Sk~ 1591 (1806)
.+|+ .+++....+...... +...-.+||++.|-.. +|.. .+..-+..++++|+||+..+---
T Consensus 147 ~~~l---Glsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD---- 217 (908)
T PRK13107 147 FEFL---GLTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID---- 217 (908)
T ss_pred HHhc---CCeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc----
Confidence 8886 567766655443221 1122256899888444 4433 12233467899999999876321
Q ss_pred HHHHHHhhhcceEEeccCCCCCChhhHHhhhh
Q 000237 1592 TVAVKQLKAAHRLILSGTPIQNNITDLWSLFD 1623 (1806)
Q Consensus 1592 skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~ 1623 (1806)
.|+.-+++||.+ ... .++|..++
T Consensus 218 -------EArtPLIISg~~-~~~-~~~y~~~~ 240 (908)
T PRK13107 218 -------EARTPLIISGAA-EDS-SELYIKIN 240 (908)
T ss_pred -------cCCCceeecCCC-ccc-hHHHHHHH
Confidence 355668899854 333 45555444
No 147
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=93.84 E-value=0.12 Score=65.94 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=47.1
Q ss_pred ccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecccc-HHHHHH
Q 000237 1441 ELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTL-VGHWAF 1518 (1806)
Q Consensus 1441 ~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SL-l~qW~~ 1518 (1806)
.+...|-+-|..++.+.... .. --++--.+|.|||.+..-+|..+...+ .++||.+|..+ +.|-.+
T Consensus 181 ~~~~~ln~SQk~Av~~~~~~--k~-l~~I~GPPGTGKT~TlvEiI~qlvk~~---------k~VLVcaPSn~AVdNive 247 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAINN--KD-LLIIHGPPGTGKTRTLVEIISQLVKQK---------KRVLVCAPSNVAVDNIVE 247 (649)
T ss_pred cCCccccHHHHHHHHHHhcc--CC-ceEeeCCCCCCceeeHHHHHHHHHHcC---------CeEEEEcCchHHHHHHHH
Confidence 45678889999999876422 12 234555999999999999998877643 57888888764 455555
No 148
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.65 E-value=0.51 Score=59.17 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=77.3
Q ss_pred cCCCCchHHHHHHHH-HHhHHHhhhcCCccCCCcE-EEEec-cccHHHHHHHHHHhhccCCceEEEEecChhHHHHHHhh
Q 000237 1471 DDMGLGKTLQASAIV-ASDIAERRASNSIEEIHPS-LIICP-STLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQ 1547 (1806)
Q Consensus 1471 DdMGLGKTlqaIali-a~l~~~r~~~~~~~~~~pt-LIVcP-~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~ 1547 (1806)
.-+|.|||..-+-=+ ...+.+... .++-+|+ ||+|| ..+..|-..|.++|+..-.++++..+|...........
T Consensus 267 AktgSgktaAfi~pm~~himdq~eL---~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~L 343 (731)
T KOG0339|consen 267 AKTGSGKTAAFIWPMIVHIMDQPEL---KPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKEL 343 (731)
T ss_pred eeccCcchhHHHHHHHHHhcchhhh---cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhh
Confidence 457899985322111 111111111 1123676 55667 45889999999999765667766655544333222222
Q ss_pred hcCCcEEEeeHHHHHhhHhh--hccccceEEEEcccccccChhhHHHHHHHHh----hhcc-eEEeccCC
Q 000237 1548 FDKHNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKNSKSKITVAVKQL----KAAH-RLILSGTP 1610 (1806)
Q Consensus 1548 l~~~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN~~Sk~skalk~L----~A~~-RLlLTGTP 1610 (1806)
-..+.+||+|-+.+-..+.. ..-.+-.|+|+||+.++-... .-..++.+ +.+| .|+.|+|-
T Consensus 344 k~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmG--fe~qVrSI~~hirpdrQtllFsaTf 411 (731)
T KOG0339|consen 344 KEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMG--FEPQVRSIKQHIRPDRQTLLFSATF 411 (731)
T ss_pred hcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccc--cHHHHHHHHhhcCCcceEEEeeccc
Confidence 26788999999988654432 222346799999999885422 22233333 4443 46677763
No 149
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.61 E-value=0.22 Score=66.05 Aligned_cols=122 Identities=11% Similarity=0.059 Sum_probs=78.9
Q ss_pred CCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhhccCCceEEEEecChh--HHHHHHh--hh
Q 000237 1474 GLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFIDVSLMSTLQYVGSAQ--DRIALRE--QF 1548 (1806)
Q Consensus 1474 GLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~--~R~~l~~--~l 1548 (1806)
|.|||-.-+.++......+ +.+||++| -+++.|+...|+++++ .-.+.+|++.-. +|..... ..
T Consensus 170 GSGKTevyl~~i~~~l~~G---------k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAG---------RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred CCcHHHHHHHHHHHHHHcC---------CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 8999999888887766532 46999999 6699999999999994 334666766443 4433222 22
Q ss_pred cCCcEEEeeHHHHHhhHhhhccccceEEEEccccc--ccChhhHHHH--HHHHhh---hc-ceEEeccCCC
Q 000237 1549 DKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHI--IKNSKSKITV--AVKQLK---AA-HRLILSGTPI 1611 (1806)
Q Consensus 1549 ~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~--IKN~~Sk~sk--alk~L~---A~-~RLlLTGTPI 1611 (1806)
+..+|||-|...+- .---+.++||+||=|. +|...+..+. -+..++ .. ..++-|+||-
T Consensus 239 G~~~IViGtRSAvF-----aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 239 GQARVVVGTRSAVF-----APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred CCCcEEEEcceeEE-----eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 55679998886542 1122468999999885 4544433322 122222 22 3455699995
No 150
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=93.61 E-value=0.31 Score=64.33 Aligned_cols=134 Identities=19% Similarity=0.146 Sum_probs=84.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH--HH------HHHHH-HHhhccCCceEEEEec
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV--GH------WAFEI-EKFIDVSLMSTLQYVG 1536 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl--~q------W~~Ei-~kf~~~p~l~vliy~G 1536 (1806)
+.=+-.|+|.|||.+=+-.|..++..... -+.+||||.--+ ++ -.++| +.+.....+..++|..
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~YG~-------~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~ 148 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKYGL-------FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE 148 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHhCc-------eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech
Confidence 34344699999999888888777765433 589999995433 21 22233 3333445566666641
Q ss_pred ChhHHHHHHhhhcCCcEEEeeHHHHHhh---Hh---------------------hhccccceEEEEcccccccChhhHHH
Q 000237 1537 SAQDRIALREQFDKHNVIITSYDVVRKD---AD---------------------YLGQLLWNYCILDEGHIIKNSKSKIT 1592 (1806)
Q Consensus 1537 s~~~R~~l~~~l~~~dVVITSYe~Lr~d---i~---------------------~L~~i~w~~VILDEaH~IKN~~Sk~s 1592 (1806)
. ..+ .....-....|++.+.+.+.++ .. .+.+. --.||+||-|++... .+.+
T Consensus 149 ~-~~~-~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~-rPIvIvDEPh~f~~~-~k~~ 224 (985)
T COG3587 149 D-IEK-FKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASM-RPIVIVDEPHRFLGD-DKTY 224 (985)
T ss_pred H-HHH-HhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhc-CCEEEecChhhcccc-hHHH
Confidence 1 111 1112223456888888888765 11 11111 246999999999755 8899
Q ss_pred HHHHHhhhcceEEeccCC
Q 000237 1593 VAVKQLKAAHRLILSGTP 1610 (1806)
Q Consensus 1593 kalk~L~A~~RLlLTGTP 1610 (1806)
.+++.+++-..+=.+||-
T Consensus 225 ~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 225 GAIKQLNPLLILRFGATF 242 (985)
T ss_pred HHHHhhCceEEEEecccc
Confidence 999999888777777774
No 151
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.37 E-value=0.12 Score=65.46 Aligned_cols=113 Identities=23% Similarity=0.268 Sum_probs=84.1
Q ss_pred cchhhhHHHHHHHHhhcCChhhHHHHHHHHHhhccCCceeeecccccchhhhhhhhhhhH----HhHHhhHHHHHHccCC
Q 000237 527 APVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEML----HGLLGYVLPACRAGLE 602 (1806)
Q Consensus 527 APVRET~AQ~Lgall~~m~~~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKYlvAVR~dll----~~lL~~Vl~a~~~GL~ 602 (1806)
-=||++.+-+.|.+.+|+--+.+...++.+ --.++.||+||-|. |-.--+ -+++ -.-|..++.++..||.
T Consensus 295 eYVRnvt~ra~~vva~algv~~llpfl~a~--c~SrkSw~aRhTgi---ri~qqI-~~llG~s~l~hl~~l~~ci~~~l~ 368 (975)
T COG5181 295 EYVRNVTGRAVGVVADALGVEELLPFLEAL--CGSRKSWEARHTGI---RIAQQI-CELLGRSRLSHLGPLLKCISKLLK 368 (975)
T ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHHHHH--hcCccchhhhchhh---HHHHHH-HHHhCccHHhhhhhHHHHHHHHhh
Confidence 448999999999999999766444433332 23447899999863 221100 0111 1257788999999999
Q ss_pred CCCchHHHhHHhhhhhhHHHHHhhchhhHHHHHHHHHHhhcCC
Q 000237 603 DPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDL 645 (1806)
Q Consensus 603 D~DDDVraVAA~~L~Pia~~~v~~~~~~l~~il~~LWd~L~~l 645 (1806)
|.--=||-++|-+|--+|+..--...+..+.++..||.-....
T Consensus 369 D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~h 411 (975)
T COG5181 369 DRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQH 411 (975)
T ss_pred ccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhc
Confidence 9999999999999998888766678889999999999977654
No 152
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=93.32 E-value=1.2 Score=59.29 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=49.0
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIE 1521 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~ 1521 (1806)
...|-+.|+.+|.+.. ......++--.+|.|||.+..+++......+ .++||++|.. .+.+..+.+.
T Consensus 155 ~~~ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---------~~VLv~a~sn~Avd~l~e~l~ 222 (637)
T TIGR00376 155 DPNLNESQKEAVSFAL---SSKDLFLIHGPPGTGKTRTLVELIRQLVKRG---------LRVLVTAPSNIAVDNLLERLA 222 (637)
T ss_pred CCCCCHHHHHHHHHHh---cCCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---------CCEEEEcCcHHHHHHHHHHHH
Confidence 3578999999997753 1223457777899999999988887655321 4789999866 5567777776
Q ss_pred H
Q 000237 1522 K 1522 (1806)
Q Consensus 1522 k 1522 (1806)
+
T Consensus 223 ~ 223 (637)
T TIGR00376 223 L 223 (637)
T ss_pred h
Confidence 5
No 153
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=93.24 E-value=0.24 Score=69.36 Aligned_cols=136 Identities=20% Similarity=0.121 Sum_probs=71.9
Q ss_pred hcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH-HHHHHHHHHhhccCCceEEEEecChhH
Q 000237 1462 RFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV-GHWAFEIEKFIDVSLMSTLQYVGSAQD 1540 (1806)
Q Consensus 1462 ~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl-~qW~~Ei~kf~~~p~l~vliy~Gs~~~ 1540 (1806)
..+.-.|++-++|.|||.|.=.++... .. ...+.+++.-|.-+. ......+.+-.+.+.-..+-|.-....
T Consensus 80 ~~~~vvii~g~TGSGKTTqlPq~lle~---~~-----~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~ 151 (1283)
T TIGR01967 80 AENQVVIIAGETGSGKTTQLPKICLEL---GR-----GSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHD 151 (1283)
T ss_pred HhCceEEEeCCCCCCcHHHHHHHHHHc---CC-----CCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCc
Confidence 345567999999999999875444321 11 001223333364443 344445555543332222223211111
Q ss_pred HHHHHhhhcCCcEEEeeHHHHHhhHhhhc-cccceEEEEcccc-cccChhhHHHHHHHHh---hh-cceEEeccCCC
Q 000237 1541 RIALREQFDKHNVIITSYDVVRKDADYLG-QLLWNYCILDEGH-IIKNSKSKITVAVKQL---KA-AHRLILSGTPI 1611 (1806)
Q Consensus 1541 R~~l~~~l~~~dVVITSYe~Lr~di~~L~-~i~w~~VILDEaH-~IKN~~Sk~skalk~L---~A-~~RLlLTGTPI 1611 (1806)
+. -.+..|.++|...+.+.+..-. -..+++||+||+| +.-|.+-... .++.+ +. -..+++|+|.-
T Consensus 152 ~~-----s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~-lLk~il~~rpdLKlIlmSATld 222 (1283)
T TIGR01967 152 QV-----SSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLG-YLKQLLPRRPDLKIIITSATID 222 (1283)
T ss_pred cc-----CCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHH-HHHHHHhhCCCCeEEEEeCCcC
Confidence 11 1245799999998876542211 1358999999999 4555443332 12222 22 34688999984
No 154
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=93.18 E-value=0.29 Score=68.49 Aligned_cols=129 Identities=22% Similarity=0.164 Sum_probs=71.4
Q ss_pred cCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEe--cc-----ccHHHHHHHHHHhhccCCceEEEEe
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIIC--PS-----TLVGHWAFEIEKFIDVSLMSTLQYV 1535 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVc--P~-----SLl~qW~~Ei~kf~~~p~l~vliy~ 1535 (1806)
.+.-.|++-++|.|||.|.=.++... .. . ....|+| |. ++..+-.+|+..-++. .+-|.
T Consensus 88 ~~~VviI~GeTGSGKTTqlPq~lle~---g~-----g--~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~----~VGY~ 153 (1294)
T PRK11131 88 DHQVVIVAGETGSGKTTQLPKICLEL---GR-----G--VKGLIGHTQPRRLAARTVANRIAEELETELGG----CVGYK 153 (1294)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHc---CC-----C--CCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc----eecee
Confidence 44456899999999999854343321 11 0 1123444 53 4556666666653321 11121
Q ss_pred cChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh-hccccceEEEEcccc-cccChhhHHHHHHHHhh----hcceEEeccC
Q 000237 1536 GSAQDRIALREQFDKHNVIITSYDVVRKDADY-LGQLLWNYCILDEGH-IIKNSKSKITVAVKQLK----AAHRLILSGT 1609 (1806)
Q Consensus 1536 Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~-L~~i~w~~VILDEaH-~IKN~~Sk~skalk~L~----A~~RLlLTGT 1609 (1806)
-...++ .-....|+++|...+-..+.. ..-..++++||||+| +.-|.+-... .++.+- ....+++|||
T Consensus 154 vrf~~~-----~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg-~Lk~lL~~rpdlKvILmSAT 227 (1294)
T PRK11131 154 VRFNDQ-----VSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILG-YLKELLPRRPDLKVIITSAT 227 (1294)
T ss_pred ecCccc-----cCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHH-HHHHhhhcCCCceEEEeeCC
Confidence 110010 013567999999998765432 112458999999999 4555443332 344442 2356889999
Q ss_pred CC
Q 000237 1610 PI 1611 (1806)
Q Consensus 1610 PI 1611 (1806)
.-
T Consensus 228 id 229 (1294)
T PRK11131 228 ID 229 (1294)
T ss_pred CC
Confidence 83
No 155
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=92.74 E-value=0.58 Score=62.24 Aligned_cols=47 Identities=19% Similarity=-0.040 Sum_probs=39.3
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~ 1489 (1806)
..+.|+.|.+...-+......+.++++=-.+|.|||+-.++......
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~ 59 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYA 59 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHH
Confidence 45789999999998887777777789999999999998887776544
No 156
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.37 E-value=0.29 Score=47.26 Aligned_cols=58 Identities=31% Similarity=0.433 Sum_probs=47.5
Q ss_pred hhHHHHHHhcCCcHHHHHHHHHHHHHHHhhChHhHHHHHHhhhhcccCCChhHHHHHHHHHHHH
Q 000237 8 LNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLLRKVSQYLRSKSWDTRVAAAHAIGAI 71 (1806)
Q Consensus 8 LdRL~~LLeTGSt~~~R~tAA~Qlgdiak~hP~el~~LL~rv~~~LrSk~WdTRvAAa~Aig~I 71 (1806)
++-|+-+|+....+.+|..|+..||++ +..+ .+..+...|.+++|..|.+|+.|+|.|
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~---~~~~---~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL---GDPE---AIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC---THHH---HHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHh---HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 456888998899999999999999944 3333 455555666999999999999999987
No 157
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=92.15 E-value=0.85 Score=61.23 Aligned_cols=147 Identities=17% Similarity=0.263 Sum_probs=86.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecc-ccHHHHHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS-TLVGHWAFEI 1520 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~-SLl~qW~~Ei 1520 (1806)
+...|-.-|+.|+-.......| .++--=+|.|||.+...++..+...+ +++|+.+=. +.+.|---.+
T Consensus 666 ~~~~LN~dQr~A~~k~L~aedy---~LI~GMPGTGKTTtI~~LIkiL~~~g---------kkVLLtsyThsAVDNILiKL 733 (1100)
T KOG1805|consen 666 ILLRLNNDQRQALLKALAAEDY---ALILGMPGTGKTTTISLLIKILVALG---------KKVLLTSYTHSAVDNILIKL 733 (1100)
T ss_pred HHhhcCHHHHHHHHHHHhccch---heeecCCCCCchhhHHHHHHHHHHcC---------CeEEEEehhhHHHHHHHHHH
Confidence 4458999999999655444443 23444689999988777777666543 578888764 4667777776
Q ss_pred HHhhccCCceEEEEecChhHHHH------------------HHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccc
Q 000237 1521 EKFIDVSLMSTLQYVGSAQDRIA------------------LREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGH 1582 (1806)
Q Consensus 1521 ~kf~~~p~l~vliy~Gs~~~R~~------------------l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH 1582 (1806)
..+. +. +.-.|....-.. +...+.+..||.+|---+- --.|....|||||+|||-
T Consensus 734 ~~~~----i~-~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEAS 806 (1100)
T KOG1805|consen 734 KGFG----IY-ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEAS 806 (1100)
T ss_pred hccC----cc-eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEcccc
Confidence 6663 11 222233321111 1122233344444422111 112445569999999998
Q ss_pred cccChhhHHHHHHHHhhhcceEEeccCCCC
Q 000237 1583 IIKNSKSKITVAVKQLKAAHRLILSGTPIQ 1612 (1806)
Q Consensus 1583 ~IKN~~Sk~skalk~L~A~~RLlLTGTPIq 1612 (1806)
.|--|- .+.-|.-..|+.|-|-+.|
T Consensus 807 QI~lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 807 QILLPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred ccccch-----hhhhhhhcceEEEeccccc
Confidence 875443 3445566778888887655
No 158
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=92.07 E-value=0.24 Score=59.77 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=50.3
Q ss_pred EEEEEecCCHHHHHHHHHHHHhHhHHHHhhhhhchhhhhccCCCccccccHHHHHHHHHHHHHhhcCccccCCCCCcchH
Q 000237 1692 IQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQALQYLLKLCSHPLLVLGDKSPESL 1771 (1806)
Q Consensus 1692 e~vv~ceLSp~Qr~lYe~~~~s~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~Vfq~L~~LRqiCnHP~LV~~~~~pe~~ 1771 (1806)
++.+.++|++.||++|+.+........... .+........... ........+-..+.+|+.+|+||+|+.+-..|...
T Consensus 5 ~y~lP~pmt~~QKdl~e~iislh~~~il~~-~~~~~~~~~i~~~-~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~l 82 (297)
T PF11496_consen 5 EYYLPTPMTSFQKDLYEQIISLHYSDILKF-CETNDSSESIDSL-LDESLVQSMELLIENLRLVANHPSLLVDHYMPKQL 82 (297)
T ss_dssp EEEEEE---HHHHHHHHHHHHHTHHHHHHH-HHSTTT--HHHH--------HHHHHHHHHHHHHHH-GGGT--TT--S-S
T ss_pred eEEEecCccHHHHHHHHHHHHHHHHHHHHH-HcccCccccccch-hhhhhHHHHHHHHHHHHHhccCccccccccCcccc
Confidence 678899999999999999988765433322 2211111100000 00022366777889999999999998877666543
Q ss_pred HhhhhhcCCCCCchhhhhhhcccchhcc
Q 000237 1772 LCHLSELFPGSSDIISELHKASSLSQIS 1799 (1806)
Q Consensus 1772 ~~~~~~L~~~~~~~l~di~~s~Kl~aL~ 1799 (1806)
.. ....-+-..-|+|+.-|.
T Consensus 83 -------l~-~e~~~~~~~tS~KF~~L~ 102 (297)
T PF11496_consen 83 -------LL-SEPAEWLAYTSGKFQFLN 102 (297)
T ss_dssp --------S-TTHHHHHHHT-HHHHHHH
T ss_pred -------cc-chHHHHHHHcCchHHHHH
Confidence 11 223334556677777663
No 159
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.07 E-value=0.38 Score=60.84 Aligned_cols=72 Identities=25% Similarity=0.275 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhcCC-ceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhhcc
Q 000237 1449 YQQEGINWLAFLKRFKL-HGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFIDV 1526 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~~~~~-gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~~~ 1526 (1806)
-|-+++.-|......|. +-.|---+|.|||.++.-+|+... +|+||++| ++|..|-..||+.|++.
T Consensus 16 DQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~~------------rPtLV~AhNKTLAaQLy~Efk~fFP~ 83 (663)
T COG0556 16 DQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKVQ------------RPTLVLAHNKTLAAQLYSEFKEFFPE 83 (663)
T ss_pred CcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHhC------------CCeEEEecchhHHHHHHHHHHHhCcC
Confidence 57888887766555443 347777899999999888876421 79999999 78999999999999965
Q ss_pred CCceEE
Q 000237 1527 SLMSTL 1532 (1806)
Q Consensus 1527 p~l~vl 1532 (1806)
..+...
T Consensus 84 NaVEYF 89 (663)
T COG0556 84 NAVEYF 89 (663)
T ss_pred cceEEE
Confidence 544433
No 160
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.05 E-value=0.61 Score=64.38 Aligned_cols=232 Identities=19% Similarity=0.205 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHhhcccCCcCC---------CccccchhhhHHHHHHHHhhcCChhhHHHHHHHHHhhccCCceeeecccc
Q 000237 502 QDCAIRFLCILSLDRFGDYVS---------DQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSL 572 (1806)
Q Consensus 502 eDlaiRlLCVlaLDRFGDyVS---------DqVVAPVRET~AQ~Lgall~~m~~~~v~~~~~iLl~~q~~~~WEvrHGgL 572 (1806)
+|-.+|...|-+|-+||+--. |. =..||..++.+|+.+....++. ..|..+..++.++||+..+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~~~------~~L~~~L~~~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLPPA------PALRDHLGSPDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcchhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCch------HHHHHHhcCCCHHHHHHHH
Confidence 457799999999999986321 11 1459999999998876555443 1333333446667776664
Q ss_pred cchhh--------hh--------hhhhhhHHhH--HhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchhhHHHH
Q 000237 573 LGIKY--------LV--------AVRQEMLHGL--LGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSI 634 (1806)
Q Consensus 573 LGiKY--------lv--------AVR~dll~~l--L~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~~l~~i 634 (1806)
--|.- ++ .||...+..| ++. .++++..|.|+|.+||..||.+|--+.. -.+..+..|
T Consensus 706 ~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~-~~~l~~~l~D~~~~VR~~aa~aL~~~~~----~~~~~~~~L 780 (897)
T PRK13800 706 DVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDD-VESVAGAATDENREVRIAVAKGLATLGA----GGAPAGDAV 780 (897)
T ss_pred HHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccC-cHHHHHHhcCCCHHHHHHHHHHHHHhcc----ccchhHHHH
Confidence 22211 10 2233222211 111 2455666777777777777777643321 111112223
Q ss_pred HHHHHHhhcCCCCCCcchHHHHHHHHHHhcCchhhHHhhccc-cc-cccccchhcccccCCCCCCCCCCchhhhcccccc
Q 000237 635 VMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMVGAT-SK-QEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRL 712 (1806)
Q Consensus 635 l~~LWd~L~~lDDLs~St~svM~LLa~l~s~~~v~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL 712 (1806)
+.++. |- | .--=.+....|+++...+.+...+.... +. ...-..-+ .-++.- .. ..-+|-|
T Consensus 781 ~~ll~----D~-d-~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa---~aL~~l--~~------~~a~~~L 843 (897)
T PRK13800 781 RALTG----DP-D-PLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAA---RALAGA--AA------DVAVPAL 843 (897)
T ss_pred HHHhc----CC-C-HHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHH---HHHHhc--cc------cchHHHH
Confidence 22211 11 1 1112233444555444333211111100 00 00000000 001100 00 1223556
Q ss_pred cccccccchhhHHHHHHHHHHHHHhccccccccCCCCCCCchhchhhHHHHHHHHHhccchHHHHHHHHHH
Q 000237 713 WPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRV 783 (1806)
Q Consensus 713 ~PFlrHsitsVR~a~l~tL~~ll~~~~~~~~~~~~~~~~W~~~i~~~~LR~vFQnlLlE~~~~I~~~s~~v 783 (1806)
.+-|...-..||++|+++|-++ . ++. .-+-.+++.+-|.+.+|+..+.++
T Consensus 844 ~~~L~D~~~~VR~~A~~aL~~~-~-~~~-------------------~a~~~L~~al~D~d~~Vr~~A~~a 893 (897)
T PRK13800 844 VEALTDPHLDVRKAAVLALTRW-P-GDP-------------------AARDALTTALTDSDADVRAYARRA 893 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhcc-C-CCH-------------------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777899999999999999885 1 111 112334678889999998877664
No 161
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=92.01 E-value=0.67 Score=53.08 Aligned_cols=113 Identities=21% Similarity=0.217 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhcccCCcCCCccccchhhhHHHHHHHHhhcCC-hhhHHHH-HHHHHhhccCCceeeecccccchhhh
Q 000237 501 LQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMH-PSLVYET-LYILLQMQRRPEWEIRHGSLLGIKYL 578 (1806)
Q Consensus 501 LeDlaiRlLCVlaLDRFGDyVSDqVVAPVRET~AQ~Lgall~~m~-~~~v~~~-~~iLl~~q~~~~WEvrHGgLLGiKYl 578 (1806)
++.. +..+----|+|+||= ...||+.+.++|-++..+.+ .. ++ +.++.....++.|.+|.+.+--|..+
T Consensus 88 ~~~~-~~~~l~~Ll~~~~~~-----~~~i~~~a~~~L~~i~~~~~~~~---~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 88 FEPY-ADILLPPLLKKLGDS-----KKFIREAANNALDAIIESCSYSP---KILLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp GHHH-HHHHHHHHHHGGG--------HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHccc-----cHHHHHHHHHHHHHHHHHCCcHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4444 333444557888883 34689999999999999999 44 34 56667777888999999988877777
Q ss_pred hhhhh---hhH--HhHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHH
Q 000237 579 VAVRQ---EML--HGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAA 622 (1806)
Q Consensus 579 vAVR~---dll--~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~ 622 (1806)
+-.-. +-+ ...++.+++++..+|.|+|-+||..|-.++.=+...
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 65544 333 335799999999999999999999999998655443
No 162
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.89 E-value=0.18 Score=40.39 Aligned_cols=31 Identities=42% Similarity=0.473 Sum_probs=26.0
Q ss_pred HHHhhhhcccCCChhHHHHHHHHHHHHHhcC
Q 000237 45 LLRKVSQYLRSKSWDTRVAAAHAIGAIAQNV 75 (1806)
Q Consensus 45 LL~rv~~~LrSk~WdTRvAAa~Aig~I~~nv 75 (1806)
||-.+...|.+++|+-|-||+.|+|.|+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 3556778899999999999999999999863
No 163
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=91.77 E-value=0.76 Score=61.73 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=29.7
Q ss_pred hcCCcEEEeeHHHHHhhHhh-----hccccceEEEEcccccccC
Q 000237 1548 FDKHNVIITSYDVVRKDADY-----LGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1548 l~~~dVVITSYe~Lr~di~~-----L~~i~w~~VILDEaH~IKN 1586 (1806)
...+|||||+++.+-.+... |....+.++|+||||++-.
T Consensus 217 a~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 217 IDEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred HhhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 45689999999999887632 2223467899999999954
No 164
>PRK04296 thymidine kinase; Provisional
Probab=91.63 E-value=0.68 Score=52.22 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=24.7
Q ss_pred ccccceEEEEcccccccChhhHHHHHHHHh-hhcceEEeccC
Q 000237 1569 GQLLWNYCILDEGHIIKNSKSKITVAVKQL-KAAHRLILSGT 1609 (1806)
Q Consensus 1569 ~~i~w~~VILDEaH~IKN~~Sk~skalk~L-~A~~RLlLTGT 1609 (1806)
....+++||+||+|.+. ...+...++.+ .....+++||-
T Consensus 75 ~~~~~dvviIDEaq~l~--~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLD--KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred hCCCCCEEEEEccccCC--HHHHHHHHHHHHHcCCeEEEEec
Confidence 34568999999999873 23344455554 34446677763
No 165
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=91.51 E-value=0.82 Score=61.49 Aligned_cols=137 Identities=19% Similarity=0.132 Sum_probs=83.5
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH----HHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV----GHWAF 1518 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl----~qW~~ 1518 (1806)
....++-|.-|.--| +.|-|.=-.+|-|||+++...+......+ ..+-||+|...+ ..|..
T Consensus 78 g~~~~dvQlig~l~l------~~G~iaEm~TGEGKTLvA~l~a~l~al~G---------~~v~vvT~neyLA~Rd~e~~~ 142 (796)
T PRK12906 78 GLRPFDVQIIGGIVL------HEGNIAEMKTGEGKTLTATLPVYLNALTG---------KGVHVVTVNEYLSSRDATEMG 142 (796)
T ss_pred CCCCchhHHHHHHHH------hcCCcccccCCCCCcHHHHHHHHHHHHcC---------CCeEEEeccHHHHHhhHHHHH
Confidence 345566788776433 22446667899999998765544333221 578888997654 34666
Q ss_pred HHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHH-----HHhh----HhhhccccceEEEEcccccccChhh
Q 000237 1519 EIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDV-----VRKD----ADYLGQLLWNYCILDEGHIIKNSKS 1589 (1806)
Q Consensus 1519 Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~-----Lr~d----i~~L~~i~w~~VILDEaH~IKN~~S 1589 (1806)
.+.+|+ .+++....|...... +...-.+||+-+|-.. +|.. .+......++++|+||+..+-=-
T Consensus 143 ~~~~~L---Gl~vg~i~~~~~~~~--r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiD-- 215 (796)
T PRK12906 143 ELYRWL---GLTVGLNLNSMSPDE--KRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILID-- 215 (796)
T ss_pred HHHHhc---CCeEEEeCCCCCHHH--HHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeec--
Confidence 666665 577777766432221 2233467888777443 4432 23333457899999999876211
Q ss_pred HHHHHHHHhhhcceEEeccCC
Q 000237 1590 KITVAVKQLKAAHRLILSGTP 1610 (1806)
Q Consensus 1590 k~skalk~L~A~~RLlLTGTP 1610 (1806)
.|+.-+++||.+
T Consensus 216 ---------eartPLiisg~~ 227 (796)
T PRK12906 216 ---------EARTPLIISGQA 227 (796)
T ss_pred ---------cCCCceecCCCC
Confidence 344567888766
No 166
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.50 E-value=0.86 Score=55.36 Aligned_cols=152 Identities=16% Similarity=0.101 Sum_probs=95.8
Q ss_pred cchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHhh
Q 000237 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKFI 1524 (1806)
Q Consensus 1446 LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf~ 1524 (1806)
.-|-|+..|-.++ .|..||=|.-+|.|||.. |..-.... .+ ..+-..=.||+.|.. +..|-.+.|.-..
T Consensus 30 pTpiQ~~cIpkIL----eGrdcig~AkTGsGKT~A---FaLPil~r--Ls-edP~giFalvlTPTrELA~QiaEQF~alG 99 (442)
T KOG0340|consen 30 PTPIQQACIPKIL----EGRDCIGCAKTGSGKTAA---FALPILNR--LS-EDPYGIFALVLTPTRELALQIAEQFIALG 99 (442)
T ss_pred CCchHhhhhHHHh----cccccccccccCCCcchh---hhHHHHHh--hc-cCCCcceEEEecchHHHHHHHHHHHHHhc
Confidence 4567777775443 456678889999999953 33222211 11 111113569999965 7777777777666
Q ss_pred ccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh------hccccceEEEEcccccccChhhHHHHHHHHh
Q 000237 1525 DVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY------LGQLLWNYCILDEGHIIKNSKSKITVAVKQL 1598 (1806)
Q Consensus 1525 ~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~------L~~i~w~~VILDEaH~IKN~~Sk~skalk~L 1598 (1806)
..-.+++.+++|....-..-..-..+.++||++-+.+.-.+.. +.-.+..++|+|||.++-+. .+...+..+
T Consensus 100 k~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~--~f~d~L~~i 177 (442)
T KOG0340|consen 100 KLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAG--CFPDILEGI 177 (442)
T ss_pred ccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhcc--chhhHHhhh
Confidence 5567888888888765544444556778999999877533221 11223578999999998664 233333332
Q ss_pred ----h-hcceEEeccC
Q 000237 1599 ----K-AAHRLILSGT 1609 (1806)
Q Consensus 1599 ----~-A~~RLlLTGT 1609 (1806)
. .+-.+++|+|
T Consensus 178 ~e~lP~~RQtLlfSAT 193 (442)
T KOG0340|consen 178 EECLPKPRQTLLFSAT 193 (442)
T ss_pred hccCCCccceEEEEee
Confidence 2 2356888888
No 167
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=91.48 E-value=0.91 Score=52.88 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=71.8
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEK 1522 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~k 1522 (1806)
+-.+||-|.+-+..|..- ..+.+.++=--||-|||-+.+=+++.....+. .=+-+|||+.|+.+-.+-+..
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--------~LvrviVpk~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--------RLVRVIVPKALLEQMRQMLRS 91 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--------cEEEEEcCHHHHHHHHHHHHH
Confidence 457999999999888643 35566789999999999988877776554321 346688999999998888877
Q ss_pred hhccC-CceEEE--EecCh---hHH-HHHH----hhhcCCcEEEeeHHHHH
Q 000237 1523 FIDVS-LMSTLQ--YVGSA---QDR-IALR----EQFDKHNVIITSYDVVR 1562 (1806)
Q Consensus 1523 f~~~p-~l~vli--y~Gs~---~~R-~~l~----~~l~~~dVVITSYe~Lr 1562 (1806)
.++.- .-+++. |.... ... ..++ ......+|++++-+.+.
T Consensus 92 ~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhil 142 (229)
T PF12340_consen 92 RLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHIL 142 (229)
T ss_pred HHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHH
Confidence 66421 122222 21111 111 1111 22346789999987653
No 168
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=91.03 E-value=0.64 Score=57.31 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=50.2
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHH-HHHHHHhhccCCceEEEEecChhHHHHHHh
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHW-AFEIEKFIDVSLMSTLQYVGSAQDRIALRE 1546 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW-~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~ 1546 (1806)
++-=..|.|||+.++.++..+... ......+++|+...+.+. ...+.+-.. +.
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~-------~~~~~~~~l~~n~~l~~~l~~~l~~~~~-~~------------------ 58 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNS-------EEGKKVLYLCGNHPLRNKLREQLAKKYN-PK------------------ 58 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhcc-------ccCCceEEEEecchHHHHHHHHHhhhcc-cc------------------
Confidence 344579999999999998776111 111567788886655443 334443320 00
Q ss_pred hhcCCcEEEeeHHHHHhhHh--hhccccceEEEEcccccccC
Q 000237 1547 QFDKHNVIITSYDVVRKDAD--YLGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1547 ~l~~~dVVITSYe~Lr~di~--~L~~i~w~~VILDEaH~IKN 1586 (1806)
.....+.....+.+... ......+++||+||||++..
T Consensus 59 ---~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 ---LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ---hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 00112222222222221 22345689999999999976
No 169
>PTZ00429 beta-adaptin; Provisional
Probab=90.54 E-value=1.4 Score=59.43 Aligned_cols=269 Identities=18% Similarity=0.119 Sum_probs=137.0
Q ss_pred HhHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchhhHH--HHHHHHHHhhcCCCCCCcchHHHHHHHHHHhc
Q 000237 587 HGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLH--SIVMLLWDILLDLDDLSPSTSSVMNLLAEIYS 664 (1806)
Q Consensus 587 ~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~~l~--~il~~LWd~L~~lDDLs~St~svM~LLa~l~s 664 (1806)
+++++.+++++..+|.|.+.=||.-||-++.=+ .+..|+.+. .++..|=++|.| .|.+.- ++.+.+|-+++.
T Consensus 135 ~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kl----y~~~pelv~~~~~~~~L~~LL~D-~dp~Vv-~nAl~aL~eI~~ 208 (746)
T PTZ00429 135 SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKL----FHDDMQLFYQQDFKKDLVELLND-NNPVVA-SNAAAIVCEVND 208 (746)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----HhhCcccccccchHHHHHHHhcC-CCccHH-HHHHHHHHHHHH
Confidence 679999999999999999999999999998543 444444332 334444444322 223333 333445555553
Q ss_pred C-chhhHHhh-------c----cccccccccchhcccccCCCCCCCCCCchhhhcccccccccccccchhhHHHHHHHHH
Q 000237 665 Q-EEMIPKMV-------G----ATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLE 732 (1806)
Q Consensus 665 ~-~~v~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~a~l~tL~ 732 (1806)
+ |..+...+ . ..+|....+=++. ..+. +........++.++-|.|.|+=++|-.++++++.
T Consensus 209 ~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL-----~~y~--P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il 281 (746)
T PTZ00429 209 YGSEKIESSNEWVNRLVYHLPECNEWGQLYILELL-----AAQR--PSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVA 281 (746)
T ss_pred hCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHH-----HhcC--CCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3 21111111 0 0011111111111 1111 1111124677888999999999999999999988
Q ss_pred HHHHhccccccccCCCCCCCchhchhhHHHHHHH--HHhccchHHHHHHHHHHHHHHhcCChhhHHHhhhhhHHHHHHHh
Q 000237 733 RLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQ--NLLLESNEEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELA 810 (1806)
Q Consensus 733 ~ll~~~~~~~~~~~~~~~~W~~~i~~~~LR~vFQ--nlLlE~~~~I~~~s~~vW~~ll~~~~~~~~~~~~~~~~~wl~L~ 810 (1806)
.+....+. .+...+++.+=. --|+...++|+=++++-=..+++..+. +..+++...+|+.
T Consensus 282 ~l~~~~~~--------------~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~----lf~~~~~~Ff~~~ 343 (746)
T PTZ00429 282 NLASRCSQ--------------ELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPN----LLRTNLDSFYVRY 343 (746)
T ss_pred HhcCcCCH--------------HHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHH----HHHHHHHhhhccc
Confidence 87532110 012222211111 123556677777777665555553332 2233444555554
Q ss_pred hcCCCCCCCCCccccccCCCccchhhHHHHHhh-hhcccCCCCCCCCCCcccCCCCCCcceeecCCcchhhhhhHHHHHH
Q 000237 811 TTPFGSSLDATKMFWPVALPRKSHFKAAAKMRA-VKLENDSSGSVDLPQERNGDTSTNSVKITVGSDLEMSVTNTRVVTA 889 (1806)
Q Consensus 811 mtP~g~~~d~~~~~~p~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~~~~~~n~d~~~~~~~~~~ggd~~lv~~~tRi~aA 889 (1806)
.-|.-+.. .|..- .+ .....|++.-..+++-|+ .|.+ ..-|..+.
T Consensus 344 ~Dp~yIK~--------------------~KLeIL~~----------Lane~Nv~~IL~EL~eYa-~d~D---~ef~r~aI 389 (746)
T PTZ00429 344 SDPPFVKL--------------------EKLRLLLK----------LVTPSVAPEILKELAEYA-SGVD---MVFVVEVV 389 (746)
T ss_pred CCcHHHHH--------------------HHHHHHHH----------HcCcccHHHHHHHHHHHh-hcCC---HHHHHHHH
Confidence 43321100 00000 00 011233333223333444 2322 34567788
Q ss_pred HHHHHHHhhhccchhHhHHHHHHHhhcCCchh
Q 000237 890 SALGIFASKLHEGSIQFVIDPLWNALTSFSGV 921 (1806)
Q Consensus 890 ~alG~l~~~~~~~~~~~~~~~L~~~L~S~sa~ 921 (1806)
+|+|.++..++. ....+.+.|+..|+....+
T Consensus 390 rAIg~lA~k~~~-~a~~cV~~Ll~ll~~~~~~ 420 (746)
T PTZ00429 390 RAIASLAIKVDS-VAPDCANLLLQIVDRRPEL 420 (746)
T ss_pred HHHHHHHHhChH-HHHHHHHHHHHHhcCCchh
Confidence 999999988764 3444556677777654433
No 170
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=90.47 E-value=1.4e+02 Score=45.28 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=83.1
Q ss_pred HHHHHHHHhhccCChhhhHHHHh--hhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHH-hhcccCC---cc
Q 000237 1265 NNIQLVRSIAPMLDEALKPKLLT--LLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVEN-AIPMLGD---MT 1338 (1806)
Q Consensus 1265 d~l~vl~~~~p~~~~~l~~~~~~--llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~-~~p~l~~---~~ 1338 (1806)
++..+|..++. -+++....++. .+|.++..|++...-+|..+|+|++.+......+-...+++. ++|.|-+ ..
T Consensus 628 ~Aa~iLsnL~a-~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 628 KAASVLADIFS-SRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS 706 (2102)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC
Confidence 34455555554 23333333433 489999999999999999999999999976655543333443 3333322 23
Q ss_pred chhhccchhHHHHHHHhhcCCc--ccCCcchhhhhhhhccccCCchhhhhhhhhhhhcccccc
Q 000237 1339 SVHARQGAGMLISLLVQGLGAE--LVPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVPLLP 1399 (1806)
Q Consensus 1339 ~~~~r~ga~~~~~~~~~~~~~~--~~py~~~l~~pll~~msd~~~~vr~~~~~~fa~lv~l~p 1399 (1806)
+.....-+.+.+..++..-... +..... |.|+.+-+.+.++.+|..+......|..-.|
T Consensus 707 d~~v~e~Al~ALanLl~~~e~~~ei~~~~~--I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 707 SIEVAEQAVCALANLLSDPEVAAEALAEDI--ILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred ChHHHHHHHHHHHHHHcCchHHHHHHhcCc--HHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 3445566777777776533221 222222 5778888888888888888777766655544
No 171
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=90.35 E-value=1 Score=58.20 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=55.7
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf 1523 (1806)
+|-.-|..+|...+. +.=-|+--.+|.|||++.-+++..+..... +|+||++|+. .+.|-.+.|++-
T Consensus 410 kLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~~~--------~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQHA--------GPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHhcC--------CceEEEcccchhHHHHHHHHHhc
Confidence 577789999976542 223478889999999999888877665422 7999999976 568999988875
Q ss_pred hccCCceEEEEe
Q 000237 1524 IDVSLMSTLQYV 1535 (1806)
Q Consensus 1524 ~~~p~l~vliy~ 1535 (1806)
.++++-..
T Consensus 478 ----gLKVvRl~ 485 (935)
T KOG1802|consen 478 ----GLKVVRLC 485 (935)
T ss_pred ----CceEeeee
Confidence 35555433
No 172
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=90.31 E-value=2.7 Score=42.90 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=26.7
Q ss_pred ccceEEEEcccccccC-hhhHHHHHHHHhh------hcceEEeccCCCCC
Q 000237 1571 LLWNYCILDEGHIIKN-SKSKITVAVKQLK------AAHRLILSGTPIQN 1613 (1806)
Q Consensus 1571 i~w~~VILDEaH~IKN-~~Sk~skalk~L~------A~~RLlLTGTPIqN 1613 (1806)
.....+|+||++.+.. ........+..+. ...++++|+++...
T Consensus 83 ~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 3467899999998722 2223334444442 45678888887664
No 173
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=90.00 E-value=0.44 Score=56.11 Aligned_cols=166 Identities=19% Similarity=0.107 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhhcCCceEEEcCCCCchHHHH-HHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHhhcc
Q 000237 1449 YQQEGINWLAFLKRFKLHGILCDDMGLGKTLQA-SAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKFIDV 1526 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqa-Ialia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf~~~ 1526 (1806)
-|+.++--+. .+...|--...|.|||.+- |+++.......+ -.-.||+.|.. |..|-.+-+....+.
T Consensus 53 IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~~~r-------~tQ~lilsPTRELa~Qi~~vi~alg~~ 121 (400)
T KOG0328|consen 53 IQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDISVR-------ETQALILSPTRELAVQIQKVILALGDY 121 (400)
T ss_pred HHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeecccccc-------eeeEEEecChHHHHHHHHHHHHHhccc
Confidence 4777775442 3445677789999999753 333332211111 14689999955 777888878887765
Q ss_pred CCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhH--hhhccccceEEEEcccccccC--hhhHHHHHHHHhh-hc
Q 000237 1527 SLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDA--DYLGQLLWNYCILDEGHIIKN--SKSKITVAVKQLK-AA 1601 (1806)
Q Consensus 1527 p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di--~~L~~i~w~~VILDEaH~IKN--~~Sk~skalk~L~-A~ 1601 (1806)
-.+.+....|...-...++..-....||.-|...+-..+ ..|+.....++|+||+..+-| .+.+++...+.|. ..
T Consensus 122 mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~ 201 (400)
T KOG0328|consen 122 MNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGA 201 (400)
T ss_pred ccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCc
Confidence 677777777766533222222123346666655554433 346666789999999998855 6678888888886 66
Q ss_pred ceEEeccCCCCCChhhHHhhhhhhCCCC
Q 000237 1602 HRLILSGTPIQNNITDLWSLFDFLMPGF 1629 (1806)
Q Consensus 1602 ~RLlLTGTPIqNnl~ELwSLL~FL~Pg~ 1629 (1806)
..+++|+|-- .|+..+-++.++++
T Consensus 202 Qvv~~SATlp----~eilemt~kfmtdp 225 (400)
T KOG0328|consen 202 QVVLVSATLP----HEILEMTEKFMTDP 225 (400)
T ss_pred eEEEEeccCc----HHHHHHHHHhcCCc
Confidence 6788999963 45555666666654
No 174
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=89.98 E-value=0.38 Score=61.79 Aligned_cols=171 Identities=13% Similarity=0.195 Sum_probs=121.9
Q ss_pred hcccHHHHHHHHHHHhccchhhhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHHHHHHHHHhhccCChhhhHH
Q 000237 1205 SRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPK 1284 (1806)
Q Consensus 1205 ~RrGA~~al~~l~~~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid~l~vl~~~~p~~~~~l~~~ 1284 (1806)
-|+||..++..+.+.+|...+++-+-+-.+-.. +. +.....--+ .++..+.+..-++++..-|-
T Consensus 150 ~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~a-i~-------------dk~~~~~re--~~~~a~~~~~~~Lg~~~EPy 213 (569)
T KOG1242|consen 150 ERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKA-II-------------DKKSALNRE--AALLAFEAAQGNLGPPFEPY 213 (569)
T ss_pred HHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHH-hc-------------ccchhhcHH--HHHHHHHHHHHhcCCCCCch
Confidence 478999999999999999998887655433221 11 111111111 56666777777888888899
Q ss_pred HHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCccchhhccchhHHHHHHHhhcCCcccCC
Q 000237 1285 LLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPY 1364 (1806)
Q Consensus 1285 ~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~py 1364 (1806)
+..++|.+|.+.-.....||++|..+.-.+-...+.-+...++-..++-+... .-..-.++++++..+...- ...+-+
T Consensus 214 iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~a-p~qLs~ 291 (569)
T KOG1242|consen 214 IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCA-PKQLSL 291 (569)
T ss_pred HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhc-hHHHHH
Confidence 99999999999999999999999999999999988888888887777766654 3345567888777554322 222222
Q ss_pred cchhhhhhh-hccccCCchhhhhhhhhhhh
Q 000237 1365 APLLVVPLL-RCMSDCDQSVRQSVTRSFAS 1393 (1806)
Q Consensus 1365 ~~~l~~pll-~~msd~~~~vr~~~~~~fa~ 1393 (1806)
.-=-++|.+ +.|-|..+.+|..+..+.-.
T Consensus 292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred HHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 222256654 78999999999988876444
No 175
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=89.67 E-value=1.7 Score=57.34 Aligned_cols=142 Identities=13% Similarity=0.118 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH-HHHHHHHHHhhcc
Q 000237 1448 RYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV-GHWAFEIEKFIDV 1526 (1806)
Q Consensus 1448 pYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl-~qW~~Ei~kf~~~ 1526 (1806)
+.|+.++.... .+.-.+|.=..|.|||.++..++..+...... ....++++.+|..-. .+..+-+....
T Consensus 148 ~~Qk~A~~~al----~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~----~~~~~I~l~APTGkAA~rL~e~~~~~~-- 217 (586)
T TIGR01447 148 NWQKVAVALAL----KSNFSLITGGPGTGKTTTVARLLLALVKQSPK----QGKLRIALAAPTGKAAARLAESLRKAV-- 217 (586)
T ss_pred HHHHHHHHHHh----hCCeEEEEcCCCCCHHHHHHHHHHHHHHhccc----cCCCcEEEECCcHHHHHHHHHHHHhhh--
Confidence 78998886543 23456888999999999998888776543211 011368888896643 34444444332
Q ss_pred CCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhh--------HhhhccccceEEEEcccccccChhhHHHHHHHHh
Q 000237 1527 SLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKD--------ADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL 1598 (1806)
Q Consensus 1527 p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~d--------i~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L 1598 (1806)
..+.. ....+ .. ..+-..|.+.+-.. ...-....++++|+||+-.+- .....+.+..+
T Consensus 218 ~~l~~-----~~~~~----~~---~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd--~~l~~~ll~al 283 (586)
T TIGR01447 218 KNLAA-----AEALI----AA---LPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD--LPLMAKLLKAL 283 (586)
T ss_pred ccccc-----chhhh----hc---cccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC--HHHHHHHHHhc
Confidence 11110 00000 00 00001111111100 001122468999999999984 34566667777
Q ss_pred hhcceEEeccCCCCC
Q 000237 1599 KAAHRLILSGTPIQN 1613 (1806)
Q Consensus 1599 ~A~~RLlLTGTPIqN 1613 (1806)
+...|++|.|=|-|=
T Consensus 284 ~~~~rlIlvGD~~QL 298 (586)
T TIGR01447 284 PPNTKLILLGDKNQL 298 (586)
T ss_pred CCCCEEEEECChhhC
Confidence 888899999987664
No 176
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=89.60 E-value=0.49 Score=60.67 Aligned_cols=213 Identities=15% Similarity=0.190 Sum_probs=127.7
Q ss_pred CChhhHHHHHHHHHhhccCCceeeecccccchhhhhhhhhhhHHhHHhh-HHHHHHccCCCCCchHHHhHHhhhhhhHHH
Q 000237 544 MHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGY-VLPACRAGLEDPDDDVRAVAADALIPTAAA 622 (1806)
Q Consensus 544 m~~~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKYlvAVR~dll~~lL~~-Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~ 622 (1806)
.+++.+..++..+..+..++.|.||..+++++-.+.-.-.+++ +. +++.+..-|.|.|..|+..|..+|.-+
T Consensus 107 ~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~----~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--- 179 (526)
T PF01602_consen 107 RTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV----EDELIPKLKQLLSDKDPSVVSAALSLLSEI--- 179 (526)
T ss_dssp -SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH----HGGHHHHHHHHTTHSSHHHHHHHHHHHHHH---
T ss_pred cccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH----HHHHHHHHhhhccCCcchhHHHHHHHHHHH---
Confidence 3677777777777777788899999999999988887655544 44 577788888999999999998888777
Q ss_pred HHhhch----hhHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhcCchhhH-------Hhhccc--cccccccchhccc
Q 000237 623 IVALDG----QTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIP-------KMVGAT--SKQEFDLNEVVRA 689 (1806)
Q Consensus 623 ~v~~~~----~~l~~il~~LWd~L~~lDDLs~St~svM~LLa~l~s~~~v~~-------~~~~~~--~~~~~~~~~~~~~ 689 (1806)
+..+ ..++.++..|...+...+... .-.++.+|..++....-.. .+.... ......+..+..+
T Consensus 180 --~~~~~~~~~~~~~~~~~L~~~l~~~~~~~--q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 180 --KCNDDSYKSLIPKLIRILCQLLSDPDPWL--QIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLI 255 (526)
T ss_dssp --HCTHHHHTTHHHHHHHHHHHHHTCCSHHH--HHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCcchhhhhHHHHHHHhhhcccccchHH--HHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 2111 335555665555543322210 1233444444443211111 100000 0001111111111
Q ss_pred ccCCCCCCCCCCchhhhcccccccccccccchhhHHHHHHHHHHHHHhccccccccCCCCCCCchhchhhHHHHHHHHHh
Q 000237 690 DDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLL 769 (1806)
Q Consensus 690 ~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~~~~~~~~~~~~~~~W~~~i~~~~LR~vFQnlL 769 (1806)
-.+ ...+..+...++.|--|+.|+-.+||..+|++|..+..... ..+. -...++..+.
T Consensus 256 ~~l------~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~--------------~~v~--~~~~~~~~l~ 313 (526)
T PF01602_consen 256 IKL------SPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP--------------PAVF--NQSLILFFLL 313 (526)
T ss_dssp HHH------SSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH--------------HHHG--THHHHHHHHH
T ss_pred HHh------hcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc--------------hhhh--hhhhhhheec
Confidence 111 12222478889999999999999999999999998865431 1133 2223344555
Q ss_pred ccchHHHHHHHHHHHHHHhc
Q 000237 770 LESNEEILQCSDRVWRLLVQ 789 (1806)
Q Consensus 770 lE~~~~I~~~s~~vW~~ll~ 789 (1806)
-+++..|...++++=..+..
T Consensus 314 ~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 314 YDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--
T ss_pred CCCChhHHHHHHHHHhhccc
Confidence 58999999999887766664
No 177
>KOG4284 consensus DEAD box protein [Transcription]
Probab=89.43 E-value=0.66 Score=59.63 Aligned_cols=155 Identities=15% Similarity=0.206 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHhhc-
Q 000237 1448 RYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKFID- 1525 (1806)
Q Consensus 1448 pYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf~~- 1525 (1806)
+-|..+|-.. ..+..-|+-.--|.|||+.-..++...+..+. ...-.+||+|.. +.-|-.+-|.+.+.
T Consensus 50 kiQaaAIP~~----~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~------~~~q~~Iv~PTREiaVQI~~tv~~v~~s 119 (980)
T KOG4284|consen 50 KIQAAAIPAI----FSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS------SHIQKVIVTPTREIAVQIKETVRKVAPS 119 (980)
T ss_pred chhhhhhhhh----hcccceEEEecCCCCceEEEEeeeehhcCccc------CcceeEEEecchhhhhHHHHHHHHhccc
Confidence 3466666322 23334588889999999864333222111111 114578999965 55677777777662
Q ss_pred cCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHh--hhccccceEEEEcccccccChhhHH---HHHHHHhh-
Q 000237 1526 VSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDAD--YLGQLLWNYCILDEGHIIKNSKSKI---TVAVKQLK- 1599 (1806)
Q Consensus 1526 ~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~--~L~~i~w~~VILDEaH~IKN~~Sk~---skalk~L~- 1599 (1806)
..+++..+|.|+...... +..+.+..|+|-|-..+...++ .+..-...+.|||||..+-...|.. ...+..|.
T Consensus 120 f~g~~csvfIGGT~~~~d-~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~ 198 (980)
T KOG4284|consen 120 FTGARCSVFIGGTAHKLD-LIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQ 198 (980)
T ss_pred ccCcceEEEecCchhhhh-hhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcch
Confidence 246788889887754432 3345677899999999887653 4555567899999999986655543 34455554
Q ss_pred hcceEEeccCCCCC
Q 000237 1600 AAHRLILSGTPIQN 1613 (1806)
Q Consensus 1600 A~~RLlLTGTPIqN 1613 (1806)
.+-.+..|+|=-+|
T Consensus 199 ~rQv~a~SATYp~n 212 (980)
T KOG4284|consen 199 IRQVAAFSATYPRN 212 (980)
T ss_pred hheeeEEeccCchh
Confidence 44567799996554
No 178
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=89.25 E-value=1.8 Score=58.36 Aligned_cols=161 Identities=18% Similarity=0.208 Sum_probs=100.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
.++.+|.+.+.-= ....+.+.|.+-.++-|||+.+=-++....-.++ +..|.+.| -+.+..=..++..|
T Consensus 223 ~~fewq~ecls~~--~~~e~~nliys~Pts~gktlvaeilml~~~l~~r--------r~~llilp~vsiv~Ek~~~l~~~ 292 (1008)
T KOG0950|consen 223 KLFEWQAECLSLP--RLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR--------RNVLLILPYVSIVQEKISALSPF 292 (1008)
T ss_pred HHHHHHHHHhcch--hhhcccceEEeCCCccchHHHHHHHHHHHHHHHh--------hceeEecceeehhHHHHhhhhhh
Confidence 4666676666321 1124556799999999999998666554433332 46788888 55666666677777
Q ss_pred hccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhcc----ccceEEEEcccccccChhh--HHHHHHHH
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQ----LLWNYCILDEGHIIKNSKS--KITVAVKQ 1597 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~----i~w~~VILDEaH~IKN~~S--k~skalk~ 1597 (1806)
...-++.+--|.|..... ....+-.+.|+|-+.--..+..+.. ..-++||+||-|.|..... -.-..+.+
T Consensus 293 ~~~~G~~ve~y~g~~~p~----~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k 368 (1008)
T KOG0950|consen 293 SIDLGFPVEEYAGRFPPE----KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAK 368 (1008)
T ss_pred ccccCCcchhhcccCCCC----CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHH
Confidence 655567777777653211 1223557999999987766655443 2368999999999954322 22222222
Q ss_pred h----hhc--ceEEeccCCCCCChhhHH
Q 000237 1598 L----KAA--HRLILSGTPIQNNITDLW 1619 (1806)
Q Consensus 1598 L----~A~--~RLlLTGTPIqNnl~ELw 1619 (1806)
+ ... ..+++|+|--.|....-|
T Consensus 369 ~~y~~~~~~~~iIGMSATi~N~~lL~~~ 396 (1008)
T KOG0950|consen 369 ILYENLETSVQIIGMSATIPNNSLLQDW 396 (1008)
T ss_pred HHHhccccceeEeeeecccCChHHHHHH
Confidence 2 111 258899998766554433
No 179
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.23 E-value=0.81 Score=56.11 Aligned_cols=144 Identities=16% Similarity=0.191 Sum_probs=85.3
Q ss_pred ceEEEcCCCCchHHHHHHH--HHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHhhccCCceEEEEecChhHHH
Q 000237 1466 HGILCDDMGLGKTLQASAI--VASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKFIDVSLMSTLQYVGSAQDRI 1542 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIal--ia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~ 1542 (1806)
..|-...+|.|||+.-+.= +.... .....+......+||..|.. |..|-+-|..+|.-.....+.+|.|.... .
T Consensus 259 DliGVAQTgtgKtL~~L~pg~ihi~a--qp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~-e 335 (629)
T KOG0336|consen 259 DLIGVAQTGTGKTLAFLLPGFIHIDA--QPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRN-E 335 (629)
T ss_pred ceEEEEecCCCcCHHHhccceeeeec--cchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCch-h
Confidence 4566789999999753211 10000 00001111125688999954 77888899999875455556666655432 2
Q ss_pred HHHhhhcCCcEEEeeHHHHHhhH--hhhccccceEEEEcccccccC--hhhHHHHHHHHhhhcceEEeccCCCC
Q 000237 1543 ALREQFDKHNVIITSYDVVRKDA--DYLGQLLWNYCILDEGHIIKN--SKSKITVAVKQLKAAHRLILSGTPIQ 1612 (1806)
Q Consensus 1543 ~l~~~l~~~dVVITSYe~Lr~di--~~L~~i~w~~VILDEaH~IKN--~~Sk~skalk~L~A~~RLlLTGTPIq 1612 (1806)
....--...+++|.+-..+-... ..+.--..-|+|||||.++-. ..-++.+.+..++.++-.+||..-..
T Consensus 336 qie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP 409 (629)
T KOG0336|consen 336 QIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWP 409 (629)
T ss_pred HHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCc
Confidence 22233356789999988775321 122223468999999999854 44566667777777666555544333
No 180
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=88.50 E-value=1.1 Score=56.75 Aligned_cols=133 Identities=19% Similarity=0.106 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHhhcCCceEEEcCCCCchHHH----HHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHH
Q 000237 1448 RYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQ----ASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEK 1522 (1806)
Q Consensus 1448 pYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlq----aIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~k 1522 (1806)
|-|+.++--+ ..++.-|...|+|.|||.- .+..|..+....... ........+|++|.- |..|-..|-.+
T Consensus 270 pIqR~aipl~----lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~e-n~~~gpyaiilaptReLaqqIeeEt~k 344 (673)
T KOG0333|consen 270 PIQRQAIPLG----LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLE-NNIEGPYAIILAPTRELAQQIEEETNK 344 (673)
T ss_pred hHHHhhccch----hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhh-hcccCceeeeechHHHHHHHHHHHHHH
Confidence 5577766422 3445568889999999932 222232222100000 011113457777854 77899999999
Q ss_pred hhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhH--hhhccccceEEEEccccccc
Q 000237 1523 FIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDA--DYLGQLLWNYCILDEGHIIK 1585 (1806)
Q Consensus 1523 f~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di--~~L~~i~w~~VILDEaH~IK 1585 (1806)
|+..-.++++...|.-.-...-...-..+.|+|.|-..+-.-. .+|-.-.-.|+|+||+.++-
T Consensus 345 f~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmi 409 (673)
T KOG0333|consen 345 FGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMI 409 (673)
T ss_pred hcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhh
Confidence 9865667777777765432221222346789999987764332 23334456899999999873
No 181
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=88.27 E-value=1.9 Score=52.94 Aligned_cols=145 Identities=21% Similarity=0.296 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc---------------cH
Q 000237 1449 YQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST---------------LV 1513 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S---------------Ll 1513 (1806)
||.-++..|. ...-.=..|.-.-|.|||+-|+|.....-..++.. ++.+|--|.- -+
T Consensus 232 eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y------~KiiVtRp~vpvG~dIGfLPG~eEeKm 303 (436)
T COG1875 232 EQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRY------RKIIVTRPTVPVGEDIGFLPGTEEEKM 303 (436)
T ss_pred HHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhh------ceEEEecCCcCcccccCcCCCchhhhc
Confidence 7888877653 11222246667899999999888765433333221 2344433322 23
Q ss_pred HHHHHHHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHH
Q 000237 1514 GHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITV 1593 (1806)
Q Consensus 1514 ~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~sk 1593 (1806)
..|.+-|..-. .++.-......+ .+...+.+..+=+-+...+|- +.+.=.++|+||||++. ....--
T Consensus 304 ~PWmq~i~DnL-----E~L~~~~~~~~~-~l~~~l~~~~iev~alt~IRG-----RSl~~~FiIIDEaQNLT--pheikT 370 (436)
T COG1875 304 GPWMQAIFDNL-----EVLFSPNEPGDR-ALEEILSRGRIEVEALTYIRG-----RSLPDSFIIIDEAQNLT--PHELKT 370 (436)
T ss_pred cchHHHHHhHH-----HHHhcccccchH-HHHHHHhccceeeeeeeeecc-----cccccceEEEehhhccC--HHHHHH
Confidence 45666554332 111111100011 111122222222222222221 12344689999999983 333334
Q ss_pred HHHHhhhcceEEeccCCCCCC
Q 000237 1594 AVKQLKAAHRLILSGTPIQNN 1614 (1806)
Q Consensus 1594 alk~L~A~~RLlLTGTPIqNn 1614 (1806)
.+.+.-...++.|||-|-|-+
T Consensus 371 iltR~G~GsKIVl~gd~aQiD 391 (436)
T COG1875 371 ILTRAGEGSKIVLTGDPAQID 391 (436)
T ss_pred HHHhccCCCEEEEcCCHHHcC
Confidence 455566788999999987653
No 182
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=87.86 E-value=0.57 Score=56.99 Aligned_cols=137 Identities=21% Similarity=0.220 Sum_probs=75.2
Q ss_pred cCCCCchHHHH----HHHHHHhHHHhhhcCCccCCCcE-EEEeccc-cHHHHHHHHHHhh------ccCCceEEEEecCh
Q 000237 1471 DDMGLGKTLQA----SAIVASDIAERRASNSIEEIHPS-LIICPST-LVGHWAFEIEKFI------DVSLMSTLQYVGSA 1538 (1806)
Q Consensus 1471 DdMGLGKTlqa----Ialia~l~~~r~~~~~~~~~~pt-LIVcP~S-Ll~qW~~Ei~kf~------~~p~l~vliy~Gs~ 1538 (1806)
.-+|.|||++- |.|+.. ........ ..-+|. |||||+. |..|-..-+..|+ +.|.++.....|.-
T Consensus 214 AfTGSGKTlvFvLP~imf~Le--qE~~lPf~-~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~ 290 (610)
T KOG0341|consen 214 AFTGSGKTLVFVLPVIMFALE--QEMMLPFA-RGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGV 290 (610)
T ss_pred EeecCCceEEEeHHHHHHHHH--HHhcCccc-cCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCc
Confidence 45899999753 222221 11111100 111444 9999965 5566655566654 45667777777766
Q ss_pred hHHHHHHhhhcCCcEEEeeHHHHHhhHhh--hccccceEEEEcccccccChh--hHHHHHHHHhhhc-ceEEeccCC
Q 000237 1539 QDRIALREQFDKHNVIITSYDVVRKDADY--LGQLLWNYCILDEGHIIKNSK--SKITVAVKQLKAA-HRLILSGTP 1610 (1806)
Q Consensus 1539 ~~R~~l~~~l~~~dVVITSYe~Lr~di~~--L~~i~w~~VILDEaH~IKN~~--Sk~skalk~L~A~-~RLlLTGTP 1610 (1806)
.-+..+...-....||++|-..+...... +.---..|+.+||+.++-.-. .-+.....-+++. ..++.|+|-
T Consensus 291 ~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM 367 (610)
T KOG0341|consen 291 PVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM 367 (610)
T ss_pred cHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc
Confidence 55554444444567899998777543221 111124689999999874321 1111122223333 368889884
No 183
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=87.34 E-value=3.3 Score=56.27 Aligned_cols=121 Identities=20% Similarity=0.167 Sum_probs=73.4
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cH---HHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LV---GHWAFE 1519 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll---~qW~~E 1519 (1806)
-..++-|.-|---| +.|.|---.+|=|||+++...+ ++....+ +.+-||.+.. |. ..|...
T Consensus 84 ~r~ydVQliGgl~L------h~G~IAEM~TGEGKTL~atlpa-ylnAL~G--------kgVhVVTvNdYLA~RDae~m~~ 148 (939)
T PRK12902 84 MRHFDVQLIGGMVL------HEGQIAEMKTGEGKTLVATLPS-YLNALTG--------KGVHVVTVNDYLARRDAEWMGQ 148 (939)
T ss_pred CCcchhHHHhhhhh------cCCceeeecCCCChhHHHHHHH-HHHhhcC--------CCeEEEeCCHHHHHhHHHHHHH
Confidence 34455677665333 3455777889999999754332 2222111 4677777755 44 579999
Q ss_pred HHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHH-----HHhhHh----hhccccceEEEEcccccc
Q 000237 1520 IEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDV-----VRKDAD----YLGQLLWNYCILDEGHII 1584 (1806)
Q Consensus 1520 i~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~-----Lr~di~----~L~~i~w~~VILDEaH~I 1584 (1806)
+.+|+ .+++....+..... .+...-.+||+.+|-.. +|.... ......++++|+||+..+
T Consensus 149 vy~~L---GLtvg~i~~~~~~~--err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 149 VHRFL---GLSVGLIQQDMSPE--ERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred HHHHh---CCeEEEECCCCChH--HHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 99998 46666654432211 12233477888887444 454332 233456899999999876
No 184
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=87.24 E-value=3.6 Score=55.62 Aligned_cols=137 Identities=18% Similarity=0.112 Sum_probs=79.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIE 1521 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~ 1521 (1806)
....|-+-|++++..+. .+.-.+|--..|.|||..+-+++....... ...++++++|..-......|.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l~~i~~~~~~~~-------~~~~v~l~ApTg~AA~~L~e~- 387 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAI----QHKVVILTGGPGTGKTTITRAIIELAEELG-------GLLPVGLAAPTGRAAKRLGEV- 387 (720)
T ss_pred cCCCCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHHHHHHHHHHHcC-------CCceEEEEeCchHHHHHHHHh-
Confidence 34578999999998653 233578889999999988777766543221 114677778876655544332
Q ss_pred HhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHhhhc
Q 000237 1522 KFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAA 1601 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L~A~ 1601 (1806)
++.+..+ -.++........ .... .-.....+++|+||++.+-. ....+.+..+...
T Consensus 388 --~g~~a~T----------ih~lL~~~~~~~--------~~~~--~~~~~~~~llIvDEaSMvd~--~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 388 --TGLTAST----------IHRLLGYGPDTF--------RHNH--LEDPIDCDLLIVDESSMMDT--WLALSLLAALPDH 443 (720)
T ss_pred --cCCcccc----------HHHHhhccCCcc--------chhh--hhccccCCEEEEeccccCCH--HHHHHHHHhCCCC
Confidence 2111000 000111000000 0000 00124578999999999943 3445556667778
Q ss_pred ceEEeccCCCCCC
Q 000237 1602 HRLILSGTPIQNN 1614 (1806)
Q Consensus 1602 ~RLlLTGTPIqNn 1614 (1806)
.|++|-|=|-|-.
T Consensus 444 ~rlilvGD~~QLp 456 (720)
T TIGR01448 444 ARLLLVGDTDQLP 456 (720)
T ss_pred CEEEEECcccccc
Confidence 8999999877654
No 185
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.88 E-value=1.8 Score=59.84 Aligned_cols=77 Identities=22% Similarity=0.090 Sum_probs=48.5
Q ss_pred cchhhhHHHHHHHHhhcCChhhHHHHHHHHHhhccCCceeeecccccchhhhhhhhhhhHHhHHhhHHHHHHccCCCCCc
Q 000237 527 APVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDD 606 (1806)
Q Consensus 527 APVRET~AQ~Lgall~~m~~~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKYlvAVR~dll~~lL~~Vl~a~~~GL~D~DD 606 (1806)
..||..+|++||.+-..-+ ..+..|+.+..++.|+||--.+-.|..+-. -+.+.+.++..|.|+|.
T Consensus 756 ~~VR~~aa~aL~~~~~~~~-----~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~---------~~~~~~~l~~aL~d~d~ 821 (897)
T PRK13800 756 REVRIAVAKGLATLGAGGA-----PAGDAVRALTGDPDPLVRAAALAALAELGC---------PPDDVAAATAALRASAW 821 (897)
T ss_pred HHHHHHHHHHHHHhccccc-----hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC---------cchhHHHHHHHhcCCCh
Confidence 5788888888887644211 124456666666677777665554433211 01234557778888888
Q ss_pred hHHHhHHhhhh
Q 000237 607 DVRAVAADALI 617 (1806)
Q Consensus 607 DVraVAA~~L~ 617 (1806)
.||..||.+|-
T Consensus 822 ~VR~~Aa~aL~ 832 (897)
T PRK13800 822 QVRQGAARALA 832 (897)
T ss_pred HHHHHHHHHHH
Confidence 88888888874
No 186
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.49 E-value=21 Score=47.66 Aligned_cols=170 Identities=18% Similarity=0.150 Sum_probs=102.8
Q ss_pred cccHHHHHHHHHHHhccchhhhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhH-HHHHHHHHHHhhccCChhhhHH
Q 000237 1206 RRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQI-LINNIQLVRSIAPMLDEALKPK 1284 (1806)
Q Consensus 1206 RrGA~~al~~l~~~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~-lid~l~vl~~~~p~~~~~l~~~ 1284 (1806)
|--|=.||.+|.+.--.+.+..+-++-..+..-|.+.+.++...... -.+..+-|+ |-+.||.+..-+++ ...+-
T Consensus 518 R~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~d-r~q~~eLQs~Lc~~Lq~i~rk~~~---~~~~~ 593 (859)
T KOG1241|consen 518 RSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLAD-RAQLNELQSLLCNTLQSIIRKVGS---DIREV 593 (859)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh-HHHHHHHHHHHHHHHHHHHHHccc---cchhH
Confidence 33456688888888777777777777777776654333211100000 001112333 34555544443333 44433
Q ss_pred HHhhhHHHHHhhcC-ChhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCcc----chhhccchhHHHHHHHhhcCC
Q 000237 1285 LLTLLPCIFKCVCH-SHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMT----SVHARQGAGMLISLLVQGLGA 1359 (1806)
Q Consensus 1285 ~~~llp~~~~~l~~-~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~~----~~~~r~ga~~~~~~~~~~~~~ 1359 (1806)
.-.++-.+++.+.+ +-.++---|=-.+++++...+ +.+...+..+.|+|.-+. .-..+.-++.++..+...|+.
T Consensus 594 ~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg-~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~ 672 (859)
T KOG1241|consen 594 SDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLG-KGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALED 672 (859)
T ss_pred HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444445 444555555556667776655 455556677888877554 334567899999999999999
Q ss_pred cccCCcchhhhhhhhccccCC
Q 000237 1360 ELVPYAPLLVVPLLRCMSDCD 1380 (1806)
Q Consensus 1360 ~~~py~~~l~~pll~~msd~~ 1380 (1806)
+++||.--++.-|+.+++...
T Consensus 673 ~i~py~d~~mt~Lvq~Lss~~ 693 (859)
T KOG1241|consen 673 DILPYCDELMTVLVQCLSSPN 693 (859)
T ss_pred hhhhHHHHHHHHHHHHccCcc
Confidence 999999988888888888763
No 187
>PRK09687 putative lyase; Provisional
Probab=86.20 E-value=0.63 Score=55.83 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhcccCCcCC---------------CccccchhhhHHHHHHHHhhcCChhhHHHHHHHHHhhccCCceee
Q 000237 503 DCAIRFLCILSLDRFGDYVS---------------DQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEI 567 (1806)
Q Consensus 503 DlaiRlLCVlaLDRFGDyVS---------------DqVVAPVRET~AQ~Lgall~~m~~~~v~~~~~iLl~~q~~~~WEv 567 (1806)
|-.+|--.+-+|-.+|.--. |. -.-||..++.+||- +..+ ..+..|+.+..++.|+|
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~----~~~~---~ai~~L~~~L~d~~~~V 175 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK-STNVRFAVAFALSV----INDE---AAIPLLINLLKDPNGDV 175 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC-CHHHHHHHHHHHhc----cCCH---HHHHHHHHHhcCCCHHH
Confidence 35677777778877764322 21 23699999999873 3443 56677888888999999
Q ss_pred ecccccchhhhhhhhhhhHHhHHhhHHHHHHccCCCCCchHHHhHHhhhh
Q 000237 568 RHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALI 617 (1806)
Q Consensus 568 rHGgLLGiKYlvAVR~dll~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~ 617 (1806)
||....+|-.+ ... -+.++++++..|.|.|++||.-|+.+|-
T Consensus 176 R~~A~~aLg~~-~~~-------~~~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 176 RNWAAFALNSN-KYD-------NPDIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHHhcC-CCC-------CHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 99999888766 111 2367788888899999999999998883
No 188
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=85.90 E-value=4.8 Score=50.10 Aligned_cols=162 Identities=15% Similarity=0.187 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHH-HhHHHhhhcCCccCCCcEEEEecc-ccHHHHHHHHHHhh-
Q 000237 1448 RYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVA-SDIAERRASNSIEEIHPSLIICPS-TLVGHWAFEIEKFI- 1524 (1806)
Q Consensus 1448 pYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia-~l~~~r~~~~~~~~~~ptLIVcP~-SLl~qW~~Ei~kf~- 1524 (1806)
+-|..+++-.. +.+....++..+|.||++. +-. .++.. +-++||.|. .|+..-.+.+.+.-
T Consensus 23 ~LQE~A~~c~V---K~k~DVyVsMPTGaGKSLC---yQLPaL~~~----------gITIV~SPLiALIkDQiDHL~~LKV 86 (641)
T KOG0352|consen 23 RLQEQAINCIV---KRKCDVYVSMPTGAGKSLC---YQLPALVHG----------GITIVISPLIALIKDQIDHLKRLKV 86 (641)
T ss_pred hHHHHHHHHHH---hccCcEEEeccCCCchhhh---hhchHHHhC----------CeEEEehHHHHHHHHHHHHHHhcCC
Confidence 45888886543 4445679999999999963 211 11110 457777783 35544444444431
Q ss_pred ccCCceEEEEecChhHHHHHHhhhc----CCcEEEeeHHHHHhh-----Hhhhcc-ccceEEEEcccccccC---hhhHH
Q 000237 1525 DVSLMSTLQYVGSAQDRIALREQFD----KHNVIITSYDVVRKD-----ADYLGQ-LLWNYCILDEGHIIKN---SKSKI 1591 (1806)
Q Consensus 1525 ~~p~l~vliy~Gs~~~R~~l~~~l~----~~dVVITSYe~Lr~d-----i~~L~~-i~w~~VILDEaH~IKN---~~Sk~ 1591 (1806)
+...++ -.-+..+|.++...+. .-.++.+|-+....+ ...|.+ ....|+++||+|-+.. .-..-
T Consensus 87 p~~SLN---SKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPD 163 (641)
T KOG0352|consen 87 PCESLN---SKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPD 163 (641)
T ss_pred chhHhc---chhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcc
Confidence 111122 1224456766665442 334565665544322 223333 3378999999997632 11112
Q ss_pred HHHHHHhhhc----ceEEeccCCCCCChhhHHhhhhhhCCC
Q 000237 1592 TVAVKQLKAA----HRLILSGTPIQNNITDLWSLFDFLMPG 1628 (1806)
Q Consensus 1592 skalk~L~A~----~RLlLTGTPIqNnl~ELwSLL~FL~Pg 1628 (1806)
|-.+-.|++. --+.||+|--..--+|+|..+.+-.|-
T Consensus 164 YL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PV 204 (641)
T KOG0352|consen 164 YLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPV 204 (641)
T ss_pred hhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcH
Confidence 2333344332 346799998888888999998877663
No 189
>PLN03025 replication factor C subunit; Provisional
Probab=85.47 E-value=6.2 Score=48.10 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=31.1
Q ss_pred cceEEEEcccccccChhh-HHHHHHHHhhhcceEEeccCCCCCChhhHHhhhh
Q 000237 1572 LWNYCILDEGHIIKNSKS-KITVAVKQLKAAHRLILSGTPIQNNITDLWSLFD 1623 (1806)
Q Consensus 1572 ~w~~VILDEaH~IKN~~S-k~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~ 1623 (1806)
.|.++|+||+|.+-.... .+.+.+.......++++++++...-...+-+-+.
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 588999999999843221 1112222224556888988776554445555443
No 190
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=85.44 E-value=3.6 Score=56.56 Aligned_cols=148 Identities=21% Similarity=0.198 Sum_probs=87.2
Q ss_pred cccccchH--HHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH---HHH
Q 000237 1442 LKVTLRRY--QQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV---GHW 1516 (1806)
Q Consensus 1442 lk~~LRpY--Q~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl---~qW 1516 (1806)
+...+||| |.-|---| +.|.|.=-.+|=|||+++..-+....-.+ .+-.+|-+-..|. ..|
T Consensus 164 ~~W~m~~yDVQliGgivL------h~G~IAEM~TGEGKTLvAtlp~yLnAL~G--------kgVHvVTVNDYLA~RDaew 229 (1112)
T PRK12901 164 ITWDMVHYDVQLIGGVVL------HQGKIAEMATGEGKTLVATLPVYLNALTG--------NGVHVVTVNDYLAKRDSEW 229 (1112)
T ss_pred ccCCCcccchHHhhhhhh------cCCceeeecCCCCchhHHHHHHHHHHHcC--------CCcEEEEechhhhhccHHH
Confidence 34445554 66554322 34557767889999998754332222111 1344555555666 689
Q ss_pred HHHHHHhhccCCceEEEEec---ChhHHHHHHhhhcCCcEEEeeH-----HHHHhh----HhhhccccceEEEEcccccc
Q 000237 1517 AFEIEKFIDVSLMSTLQYVG---SAQDRIALREQFDKHNVIITSY-----DVVRKD----ADYLGQLLWNYCILDEGHII 1584 (1806)
Q Consensus 1517 ~~Ei~kf~~~p~l~vliy~G---s~~~R~~l~~~l~~~dVVITSY-----e~Lr~d----i~~L~~i~w~~VILDEaH~I 1584 (1806)
...+.+|+ .+++..... .+.+|. ..-.+||+-+|- +.+|.. .+.+-+..++|+|+||+..|
T Consensus 230 mgply~fL---GLsvg~i~~~~~~~~~rr----~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 230 MGPLYEFH---GLSVDCIDKHQPNSEARR----KAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred HHHHHHHh---CCceeecCCCCCCHHHHH----HhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 99999998 456655533 233332 234668877763 344432 23444567999999999865
Q ss_pred cChhhHHHHHHHHh-hhcceEEeccCCCCCChhhHHhhhh
Q 000237 1585 KNSKSKITVAVKQL-KAAHRLILSGTPIQNNITDLWSLFD 1623 (1806)
Q Consensus 1585 KN~~Sk~skalk~L-~A~~RLlLTGTPIqNnl~ELwSLL~ 1623 (1806)
- + .|+.-+++||. ..+...++|..++
T Consensus 303 L------------IDEARTPLIISGp-~~~~~~~~y~~~~ 329 (1112)
T PRK12901 303 L------------IDDARTPLIISGP-VPKGDDQEFEELK 329 (1112)
T ss_pred h------------hccccCcEEEeCC-CCCccHHHHHHHH
Confidence 1 2 46667999984 4444445554444
No 191
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=85.26 E-value=3.4 Score=41.59 Aligned_cols=113 Identities=14% Similarity=0.048 Sum_probs=60.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEEEEecChhHHHHHH
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR 1545 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~ 1545 (1806)
+.+|.=.+|.|||..+..++....... ..++.+.+......|........ ..
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~----~~--------------- 55 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPG---------GGVIYIDGEDILEEVLDQLLLII----VG--------------- 55 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCC---------CCEEEECCEEccccCHHHHHhhh----hh---------------
Confidence 457888999999998888875432210 25777777666555544432110 00
Q ss_pred hhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHH---------HHHhhhcceEEeccCC
Q 000237 1546 EQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVA---------VKQLKAAHRLILSGTP 1610 (1806)
Q Consensus 1546 ~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~ska---------lk~L~A~~RLlLTGTP 1610 (1806)
...........++.............+++||.+.+.......... .........++.+.++
T Consensus 56 ----~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 56 ----GKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred ----ccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 000111111222222233333336999999999987665544332 2222455566666664
No 192
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=85.15 E-value=5.7 Score=51.02 Aligned_cols=253 Identities=21% Similarity=0.217 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCCCCcchHHHHHhhhhhchHHHHHHHHHHHHHHHHHhhcCCCCChh
Q 000237 1061 MLTTSGYLKCVQSNLHVTVSALVAAAVVWMSELPARLNPIILPLMASIKREQEEKLQEKAAEALAELIADCIARKPSPND 1140 (1806)
Q Consensus 1061 l~~~i~~~~~~~~~~~~~V~A~~A~A~v~l~~LP~KLNPiIkpLMeSIK~EEn~~LQ~~sA~sla~Li~~~~~~~~~p~~ 1140 (1806)
+..+++.++..-+.-+-.+.+.+=.++..+. -|+-..+++.+++..+. -.++..++.|+-++.++...+-+ -.+..
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~~p~--~~~~~ 152 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEPLIPDVIKLLS-DPSPYVRKKAALALLKIYRKDPD--LVEDE 152 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCHC--CHHGG
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhHHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCHH--HHHHH
Confidence 4445555554443333334444333333333 55556677777777766 56789999999999999986332 11112
Q ss_pred HHHHHhhhhccCCCCCCCccccCCCccccccccccccccccCcccccccccCCCccccccchhhhcccHHHHHHHHHHHh
Q 000237 1141 KLIKNICSLTSMDPCETPQAAAMGSMEIIDDQDFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCGKF 1220 (1806)
Q Consensus 1141 KIikNLc~flC~D~~~tP~~~~~~~~~~~~~~gilsl~~~~~~~~~~~~~~~~~~~~~~~~~~i~RrGA~~al~~l~~~f 1220 (1806)
++..|..++ .|+. | .-+..|..++..+ +.
T Consensus 153 -~~~~l~~lL-~d~~--~---------------------------------------------~V~~~a~~~l~~i--~~ 181 (526)
T PF01602_consen 153 -LIPKLKQLL-SDKD--P---------------------------------------------SVVSAALSLLSEI--KC 181 (526)
T ss_dssp -HHHHHHHHT-THSS--H---------------------------------------------HHHHHHHHHHHHH--HC
T ss_pred -HHHHHhhhc-cCCc--c---------------------------------------------hhHHHHHHHHHHH--cc
Confidence 455555444 2211 1 1223455566666 22
Q ss_pred ccchh-hhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHHHHHHHHHhhccCChhhhHHHHhhhHHHHHhhcCC
Q 000237 1221 GVSLF-DKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHS 1299 (1806)
Q Consensus 1221 g~~l~-~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid~l~vl~~~~p~~~~~l~~~~~~llp~~~~~l~~~ 1299 (1806)
-++.+ .-+|.+-..+..-+ ....+...+..+++|+.+.|.-...-.. ..+++.+..++++.
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l----------------~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~ 243 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLL----------------SDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSS 243 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHH----------------TCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcc----------------cccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhcc
Confidence 22222 22333333333222 1123344566677777666653333321 45677777888899
Q ss_pred hhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCccchhhccchhHHHHHHHhhcCCcccCCcchhhhhhhhccc-c
Q 000237 1300 HVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMS-D 1378 (1806)
Q Consensus 1300 ~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~py~~~l~~pll~~ms-d 1378 (1806)
...|++.+++|+..+..... .+..++..+..++.+ .+...|.=+.+.+.++.... .|++. .....+-.+. +
T Consensus 244 ~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~~l~~~~----~~~v~-~~~~~~~~l~~~ 315 (526)
T PF01602_consen 244 SPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLSS-SDPNVRYIALDSLSQLAQSN----PPAVF-NQSLILFFLLYD 315 (526)
T ss_dssp HHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHCCHC----HHHHG-THHHHHHHHHCS
T ss_pred ccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhhc-ccchhehhHHHHHHHhhccc----chhhh-hhhhhhheecCC
Confidence 99999999999998887555 677777778888884 34445666777777776543 12222 1112223444 7
Q ss_pred CCchhhhhhhhhhhhc
Q 000237 1379 CDQSVRQSVTRSFASL 1394 (1806)
Q Consensus 1379 ~~~~vr~~~~~~fa~l 1394 (1806)
.|..+|..+......+
T Consensus 316 ~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 316 DDPSIRKKALDLLYKL 331 (526)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhhc
Confidence 7888888776554443
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=84.73 E-value=4 Score=54.17 Aligned_cols=143 Identities=13% Similarity=0.140 Sum_probs=79.0
Q ss_pred chHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHH-HHHHHHHHhhc
Q 000237 1447 RRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVG-HWAFEIEKFID 1525 (1806)
Q Consensus 1447 RpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~-qW~~Ei~kf~~ 1525 (1806)
-+.|++++.-.. .+.-.++--.+|.|||.++..++..+..... ....++++++|..-.. .-.+.+..-.
T Consensus 154 ~d~Qk~Av~~a~----~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~-----~~~~~i~l~APTgkAA~rL~e~~~~~~- 223 (615)
T PRK10875 154 VDWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQLAD-----GERCRIRLAAPTGKAAARLTESLGKAL- 223 (615)
T ss_pred CHHHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcC-----CCCcEEEEECCcHHHHHHHHHHHHhhh-
Confidence 479999996432 2345688889999999998888876544211 0114577778865442 2222232221
Q ss_pred cCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHH-Hhh-------HhhhccccceEEEEcccccccChhhHHHHHHHH
Q 000237 1526 VSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVV-RKD-------ADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQ 1597 (1806)
Q Consensus 1526 ~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~L-r~d-------i~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~ 1597 (1806)
..+.. ....+ ..+. .-..|.+.+ ... ...-....++++|+||+..+ .....++.+..
T Consensus 224 -~~~~~-----~~~~~----~~~~---~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv--d~~lm~~ll~a 288 (615)
T PRK10875 224 -RQLPL-----TDEQK----KRIP---EEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV--DLPMMARLIDA 288 (615)
T ss_pred -hcccc-----chhhh----hcCC---CchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc--cHHHHHHHHHh
Confidence 11100 00000 0000 001111111 100 00112345799999999998 44556677778
Q ss_pred hhhcceEEeccCCCCCC
Q 000237 1598 LKAAHRLILSGTPIQNN 1614 (1806)
Q Consensus 1598 L~A~~RLlLTGTPIqNn 1614 (1806)
+....|++|-|=|-|--
T Consensus 289 l~~~~rlIlvGD~~QL~ 305 (615)
T PRK10875 289 LPPHARVIFLGDRDQLA 305 (615)
T ss_pred cccCCEEEEecchhhcC
Confidence 88889999999887643
No 194
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=84.65 E-value=0.93 Score=43.76 Aligned_cols=72 Identities=29% Similarity=0.384 Sum_probs=53.6
Q ss_pred chhhhHHHHHHHHhhcCChhhHHHHHHHHHhhccCCceeeecccccchhhhhhhhhhhHHhHHhhHHHHHHccCCCCCch
Q 000237 528 PVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDD 607 (1806)
Q Consensus 528 PVRET~AQ~Lgall~~m~~~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKYlvAVR~dll~~lL~~Vl~a~~~GL~D~DDD 607 (1806)
-||..++++|| .+..+ +++..|..+-.++.|.||+-....|.++ . -+.+++.+..-|.|++|+
T Consensus 15 ~vr~~a~~~L~----~~~~~---~~~~~L~~~l~d~~~~vr~~a~~aL~~i---~-------~~~~~~~L~~~l~~~~~~ 77 (88)
T PF13646_consen 15 QVRAEAARALG----ELGDP---EAIPALIELLKDEDPMVRRAAARALGRI---G-------DPEAIPALIKLLQDDDDE 77 (88)
T ss_dssp HHHHHHHHHHH----CCTHH---HHHHHHHHHHTSSSHHHHHHHHHHHHCC---H-------HHHTHHHHHHHHTC-SSH
T ss_pred HHHHHHHHHHH----HcCCH---hHHHHHHHHHcCCCHHHHHHHHHHHHHh---C-------CHHHHHHHHHHHcCCCcH
Confidence 48999999999 45555 5566666666789999999998888876 1 255677777778776554
Q ss_pred -HHHhHHhhh
Q 000237 608 -VRAVAADAL 616 (1806)
Q Consensus 608 -VraVAA~~L 616 (1806)
||..|+.+|
T Consensus 78 ~vr~~a~~aL 87 (88)
T PF13646_consen 78 VVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 699998886
No 195
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=84.60 E-value=2.7 Score=57.17 Aligned_cols=157 Identities=18% Similarity=0.221 Sum_probs=84.8
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHH-HhHHHhhhcCCccCCCc-EEEEeccc-cHHHHHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVA-SDIAERRASNSIEEIHP-SLIICPST-LVGHWAFEIE 1521 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia-~l~~~r~~~~~~~~~~p-tLIVcP~S-Ll~qW~~Ei~ 1521 (1806)
..+|-|..++=.. ..|...|--..+|.|||+--+--+. +...++.... .+ +| .||+||.- +..|-.+++.
T Consensus 387 k~~~IQ~qAiP~I----msGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~--gd-GPi~li~aPtrela~QI~r~~~ 459 (997)
T KOG0334|consen 387 KPTPIQAQAIPAI----MSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEE--GD-GPIALILAPTRELAMQIHREVR 459 (997)
T ss_pred CCcchhhhhcchh----ccCcceEEeeccCCccchhhhcchhhhhhcCCChhh--CC-CceEEEEcCCHHHHHHHHHHHH
Confidence 4566676666332 2444567778999999975422222 2222221111 12 55 48889954 7778777777
Q ss_pred HhhccCCceE-EEEecChhHHHHHHhhhcCCcEEEeeHHHH----HhhHhhhcc-ccceEEEEcccccccC--hhhHHHH
Q 000237 1522 KFIDVSLMST-LQYVGSAQDRIALREQFDKHNVIITSYDVV----RKDADYLGQ-LLWNYCILDEGHIIKN--SKSKITV 1593 (1806)
Q Consensus 1522 kf~~~p~l~v-liy~Gs~~~R~~l~~~l~~~dVVITSYe~L----r~di~~L~~-i~w~~VILDEaH~IKN--~~Sk~sk 1593 (1806)
+|+..-.+++ .+|.|+...+..-.-. ....|+|+|-..+ ...-..+.. ..-.|+|+|||.++-. ..-+.++
T Consensus 460 kf~k~l~ir~v~vygg~~~~~qiaelk-Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 460 KFLKLLGIRVVCVYGGSGISQQIAELK-RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred HHHhhcCceEEEecCCccHHHHHHHHh-cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccch
Confidence 7765445554 4566665443322222 2378888886544 222122222 2356999999998732 2223344
Q ss_pred HHHHhhhcce-EEeccC
Q 000237 1594 AVKQLKAAHR-LILSGT 1609 (1806)
Q Consensus 1594 alk~L~A~~R-LlLTGT 1609 (1806)
.+..++..+- ++.|+|
T Consensus 539 Ii~nlrpdrQtvlfSat 555 (997)
T KOG0334|consen 539 ILQNLRPDRQTVLFSAT 555 (997)
T ss_pred HHhhcchhhhhhhhhhh
Confidence 5555544442 334444
No 196
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=84.46 E-value=3.7 Score=51.32 Aligned_cols=133 Identities=15% Similarity=0.176 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHH-HHHHhHHHhhhcCCccCCCcEEEEecc-ccHHHHHHHHHHhhcc
Q 000237 1449 YQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASA-IVASDIAERRASNSIEEIHPSLIICPS-TLVGHWAFEIEKFIDV 1526 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIa-lia~l~~~r~~~~~~~~~~ptLIVcP~-SLl~qW~~Ei~kf~~~ 1526 (1806)
-|..+|-... .+..-+--.-+|.|||..-+- ++..+....... ........+|++|. -|..|-+..|.+....
T Consensus 45 IQs~aIplaL----EgKDvvarArTGSGKT~AYliPllqkll~~k~t~-~~e~~~sa~iLvPTkEL~qQvy~viekL~~~ 119 (569)
T KOG0346|consen 45 IQSSAIPLAL----EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN-DGEQGPSAVILVPTKELAQQVYKVIEKLVEY 119 (569)
T ss_pred hhhcccchhh----cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc-cccccceeEEEechHHHHHHHHHHHHHHHHH
Confidence 4556664432 222223336899999976433 333333333321 11222445888894 4878888777765311
Q ss_pred --CCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh---hccccceEEEEcccccccC
Q 000237 1527 --SLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY---LGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1527 --p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~---L~~i~w~~VILDEaH~IKN 1586 (1806)
..++++-...+..+.....--....+|||+|-..+-..... ...-...++|+||+.-+-.
T Consensus 120 c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLlls 184 (569)
T KOG0346|consen 120 CSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLS 184 (569)
T ss_pred HHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhh
Confidence 24444444432222221122335679999999887654321 1122367899999987643
No 197
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=84.45 E-value=4.5 Score=47.79 Aligned_cols=23 Identities=30% Similarity=0.209 Sum_probs=18.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHHh
Q 000237 1466 HGILCDDMGLGKTLQASAIVASD 1488 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l 1488 (1806)
+-+|.=++|.|||..+-++...+
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 34889999999999887776544
No 198
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=84.21 E-value=5.7 Score=53.48 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=30.4
Q ss_pred ccceEEEEcccccccChhhHHHHHHHHh---hhcceEEeccCCCCCChhhHHh
Q 000237 1571 LLWNYCILDEGHIIKNSKSKITVAVKQL---KAAHRLILSGTPIQNNITDLWS 1620 (1806)
Q Consensus 1571 i~w~~VILDEaH~IKN~~Sk~skalk~L---~A~~RLlLTGTPIqNnl~ELwS 1620 (1806)
-.|.++||||+|.+.+. .....++.| ....+++|+.|-.+.=+.-+-|
T Consensus 118 gr~KVIIIDEah~LT~~--A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS 168 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH--AFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS 168 (830)
T ss_pred CCceEEEEeChhhCCHH--HHHHHHHHHHhcCCCeEEEEEECChhhccchhhh
Confidence 45899999999999542 233334444 3456888888865544444443
No 199
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=83.60 E-value=2 Score=48.09 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCccchhhccchhHHHHHHHhhcCCcccCCcchhhhhhhhccccC
Q 000237 1300 HVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDC 1379 (1806)
Q Consensus 1300 ~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~py~~~l~~pll~~msd~ 1379 (1806)
+..||--+..|++.+|...| ..+...+..+...|.|. +...|..|..++.+++. .+.+....-++.-++....|.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~---~d~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDE-DPLVRKTALLVLSHLIL---EDMIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHH---cCceeehhhhhHHHHHHHcCC
Confidence 36789999999999999887 56666677888888877 45678889999999876 344444443344567888999
Q ss_pred Cchhhhhhhhhhhhccc
Q 000237 1380 DQSVRQSVTRSFASLVP 1396 (1806)
Q Consensus 1380 ~~~vr~~~~~~fa~lv~ 1396 (1806)
++.||..|...|..+..
T Consensus 76 ~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLK 92 (178)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999887654
No 200
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=83.48 E-value=6 Score=54.39 Aligned_cols=147 Identities=18% Similarity=0.176 Sum_probs=84.1
Q ss_pred cccccch--HHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH---HHH
Q 000237 1442 LKVTLRR--YQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV---GHW 1516 (1806)
Q Consensus 1442 lk~~LRp--YQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl---~qW 1516 (1806)
+...++| -|.-|---| +.|-|-=-.+|=|||+++..-+....-.+ .+-.+|-+-..|. ..|
T Consensus 133 ~~wdm~~ydVQLiGgivL------h~G~IAEM~TGEGKTLvatlp~yLnAL~G--------~gVHvVTvNDYLA~RDaew 198 (1025)
T PRK12900 133 MTWDMVPYDVQLIGGIVL------HSGKISEMATGEGKTLVSTLPTFLNALTG--------RGVHVVTVNDYLAQRDKEW 198 (1025)
T ss_pred cccCccccchHHhhhHHh------hcCCccccCCCCCcchHhHHHHHHHHHcC--------CCcEEEeechHhhhhhHHH
Confidence 3444444 476665333 23445556789999998743332211111 1445555556666 589
Q ss_pred HHHHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeH-----HHHHhh----HhhhccccceEEEEcccccccCh
Q 000237 1517 AFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSY-----DVVRKD----ADYLGQLLWNYCILDEGHIIKNS 1587 (1806)
Q Consensus 1517 ~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSY-----e~Lr~d----i~~L~~i~w~~VILDEaH~IKN~ 1587 (1806)
...+.+|+ +++|.......... .+...-.+||+-.|- +.+|.+ .+.+-+..++|+|+||+..+-
T Consensus 199 m~p~y~fl---GLtVg~i~~~~~~~--~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL-- 271 (1025)
T PRK12900 199 MNPVFEFH---GLSVGVILNTMRPE--ERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL-- 271 (1025)
T ss_pred HHHHHHHh---CCeeeeeCCCCCHH--HHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh--
Confidence 99999997 45665554322111 122334678877773 444433 233455679999999998651
Q ss_pred hhHHHHHHHHh-hhcceEEeccCCCCCChhhHHh
Q 000237 1588 KSKITVAVKQL-KAAHRLILSGTPIQNNITDLWS 1620 (1806)
Q Consensus 1588 ~Sk~skalk~L-~A~~RLlLTGTPIqNnl~ELwS 1620 (1806)
+ .|+.-+++|| |+.+....+|.
T Consensus 272 ----------IDeARTPLIISg-p~~~~~~~~y~ 294 (1025)
T PRK12900 272 ----------IDEARTPLIISG-PVPNADNSKFQ 294 (1025)
T ss_pred ----------hccccCceEEeC-CCCCcchHHHH
Confidence 2 4667799998 44444344443
No 201
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=83.11 E-value=4.2 Score=53.96 Aligned_cols=150 Identities=22% Similarity=0.236 Sum_probs=83.7
Q ss_pred cCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH-----HHHHHHHHHhhccCCceEEE-Eec
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV-----GHWAFEIEKFIDVSLMSTLQ-YVG 1536 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl-----~qW~~Ei~kf~~~p~l~vli-y~G 1536 (1806)
.+.-.|+|-++|.|||.|.=-|+...-+ ...++...+-+=|-=|..+. ..-..|+..+. ..+.+.+ |.|
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf---~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~--~eVsYqIRfd~ 344 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGF---ASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLG--SEVSYQIRFDG 344 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHccc---CCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCc--cceeEEEEecc
Confidence 4455799999999999998777643221 11111221222233343322 34455666543 2233322 555
Q ss_pred ChhHHHHHHhhhcCCcEEEeeHHHHHhhHh-hhccccceEEEEcccccccChhhHHHH-HH---HHh-----------hh
Q 000237 1537 SAQDRIALREQFDKHNVIITSYDVVRKDAD-YLGQLLWNYCILDEGHIIKNSKSKITV-AV---KQL-----------KA 1600 (1806)
Q Consensus 1537 s~~~R~~l~~~l~~~dVVITSYe~Lr~di~-~L~~i~w~~VILDEaH~IKN~~Sk~sk-al---k~L-----------~A 1600 (1806)
+-.+ ...|-++|=..+-+.++ .|.-..+..||+||||. ++-+|-+.- .+ -.| +.
T Consensus 345 ti~e---------~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHE-RSvnTDILiGmLSRiV~LR~k~~ke~~~~kp 414 (1172)
T KOG0926|consen 345 TIGE---------DTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHE-RSVNTDILIGMLSRIVPLRQKYYKEQCQIKP 414 (1172)
T ss_pred ccCC---------CceeEEecchHHHHHHHHhHhhhhceeEEechhhh-ccchHHHHHHHHHHHHHHHHHHhhhhcccCc
Confidence 4332 45688899888877654 34445689999999996 333332211 11 111 12
Q ss_pred cceEEeccCCCCCChhhHHhhhhhhCC
Q 000237 1601 AHRLILSGTPIQNNITDLWSLFDFLMP 1627 (1806)
Q Consensus 1601 ~~RLlLTGTPIqNnl~ELwSLL~FL~P 1627 (1806)
-.-++||+|---.++.|=--||...-|
T Consensus 415 LKLIIMSATLRVsDFtenk~LFpi~pP 441 (1172)
T KOG0926|consen 415 LKLIIMSATLRVSDFTENKRLFPIPPP 441 (1172)
T ss_pred eeEEEEeeeEEecccccCceecCCCCc
Confidence 234789999876666665566665555
No 202
>PHA02533 17 large terminase protein; Provisional
Probab=82.99 E-value=6.6 Score=51.40 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=79.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecccc-HHHHHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTL-VGHWAFEI 1520 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SL-l~qW~~Ei 1520 (1806)
....|+|+|++-+..|.. +.--++.-.=..|||..+.+++........ ...+++++|..- ...=-+++
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~-------~~~v~i~A~~~~QA~~vF~~i 124 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNK-------DKNVGILAHKASMAAEVLDRT 124 (534)
T ss_pred eecCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCC-------CCEEEEEeCCHHHHHHHHHHH
Confidence 346799999998887631 122366667789999988776654333211 136777888321 11111344
Q ss_pred HHhhc-cCCc-eEEEEecChhHHHHHHhhhc-CCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHH
Q 000237 1521 EKFID-VSLM-STLQYVGSAQDRIALREQFD-KHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQ 1597 (1806)
Q Consensus 1521 ~kf~~-~p~l-~vliy~Gs~~~R~~l~~~l~-~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~ 1597 (1806)
+.... .|.+ ...+. ...... -.+. ...|.+.+ .+.+..+....+++|+||+|.+++.. ....++..
T Consensus 125 k~~ie~~P~l~~~~i~-~~~~~~----I~l~NGS~I~~ls-----s~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p 193 (534)
T PHA02533 125 KQAIELLPDFLQPGIV-EWNKGS----IELENGSKIGAYA-----SSPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQP 193 (534)
T ss_pred HHHHHhCHHHhhccee-ecCccE----EEeCCCCEEEEEe-----CCCCccCCCCCceEEEeccccCCCHH-HHHHHHHH
Confidence 43321 0211 11000 000000 0011 11222222 22244566778899999999998754 33333333
Q ss_pred h-hh--cceEEeccCCC-CCChhhHHh
Q 000237 1598 L-KA--AHRLILSGTPI-QNNITDLWS 1620 (1806)
Q Consensus 1598 L-~A--~~RLlLTGTPI-qNnl~ELwS 1620 (1806)
. .+ ..|++...||- .|+..++|.
T Consensus 194 ~lasg~~~r~iiiSTp~G~n~fye~~~ 220 (534)
T PHA02533 194 VISSGRSSKIIITSTPNGLNHFYDIWT 220 (534)
T ss_pred HHHcCCCceEEEEECCCchhhHHHHHH
Confidence 3 22 24788888885 344444543
No 203
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=82.96 E-value=3.1 Score=55.91 Aligned_cols=127 Identities=18% Similarity=0.184 Sum_probs=74.2
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhhccCCceEEEEecChhHHHHHHh
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE 1546 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~ 1546 (1806)
++=-.||.|||...+-++...... ...++|+|.- .+++.+-...+++.. .++ ...|........
T Consensus 53 vVRSpMGTGKTtaLi~wLk~~l~~--------~~~~VLvVShRrSL~~sL~~rf~~~~-l~g--Fv~Y~d~~~~~i---- 117 (824)
T PF02399_consen 53 VVRSPMGTGKTTALIRWLKDALKN--------PDKSVLVVSHRRSLTKSLAERFKKAG-LSG--FVNYLDSDDYII---- 117 (824)
T ss_pred EEECCCCCCcHHHHHHHHHHhccC--------CCCeEEEEEhHHHHHHHHHHHHhhcC-CCc--ceeeeccccccc----
Confidence 666899999998877766543211 1156777766 778888877777652 122 223333321110
Q ss_pred hhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccc-cChhh-------HHHHHHHHh--hhcceEEeccCC
Q 000237 1547 QFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHII-KNSKS-------KITVAVKQL--KAAHRLILSGTP 1610 (1806)
Q Consensus 1547 ~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~I-KN~~S-------k~skalk~L--~A~~RLlLTGTP 1610 (1806)
.-..++-+++..+.+.+....+- .+|+.|||||+-.+ +.-.| .....++.+ ++++.+++-||-
T Consensus 118 ~~~~~~rLivqIdSL~R~~~~~l-~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 118 DGRPYDRLIVQIDSLHRLDGSLL-DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred cccccCeEEEEehhhhhcccccc-cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 01247889999998876543311 23899999996433 11111 111223333 678888888864
No 204
>PRK09687 putative lyase; Provisional
Probab=82.54 E-value=1.7 Score=52.27 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=48.1
Q ss_pred hHHHHHHhcCCcHHHHHHHHHHHHHHHhh-C-hHhHHHHHHhhhhcccCCChhHHHHHHHHHHHHHhcCCCCCCc
Q 000237 9 NRLLTLLDTGSTQATRFTAARQIGEIAKT-H-PQDLNSLLRKVSQYLRSKSWDTRVAAAHAIGAIAQNVKLTTLK 81 (1806)
Q Consensus 9 dRL~~LLeTGSt~~~R~tAA~Qlgdiak~-h-P~el~~LL~rv~~~LrSk~WdTRvAAa~Aig~I~~nv~~w~p~ 81 (1806)
+.+..|+. ...+.+|..|+.=||++... . -.+...+|... +++.+.|+-|-+|+.|+|.+....+.|+|.
T Consensus 57 ~~l~~ll~-~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l--~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~ 128 (280)
T PRK09687 57 RLAIELCS-SKNPIERDIGADILSQLGMAKRCQDNVFNILNNL--ALEDKSACVRASAINATGHRCKKNPLYSPK 128 (280)
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH--HhcCCCHHHHHHHHHHHhcccccccccchH
Confidence 44555553 44678888888888887532 1 14556666555 568888888888888888887777777664
No 205
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.53 E-value=3 Score=51.85 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=79.6
Q ss_pred cCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHhhccCCceEEEEecChhHHHHHHhhhc
Q 000237 1471 DDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD 1549 (1806)
Q Consensus 1471 DdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~ 1549 (1806)
.-+|.|||..-+-=+..-.... ...-.+.||+.|.. |..|-.+=++.+.....++....+|..+-...+.....
T Consensus 65 artgsgktaaf~ipm~e~Lk~~-----s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~ 139 (529)
T KOG0337|consen 65 ARTGSGKTAAFLIPMIEKLKSH-----SQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNE 139 (529)
T ss_pred eecCCcchhhHHHHHHHHHhhc-----cccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhcc
Confidence 3578999964332222211111 11115789999955 66665554555443345666544454433334444445
Q ss_pred CCcEEEeeHHHHHhhHh--hhccccceEEEEcccccccC--hhhHHHHHHHHhhhc-ceEEeccCCC
Q 000237 1550 KHNVIITSYDVVRKDAD--YLGQLLWNYCILDEGHIIKN--SKSKITVAVKQLKAA-HRLILSGTPI 1611 (1806)
Q Consensus 1550 ~~dVVITSYe~Lr~di~--~L~~i~w~~VILDEaH~IKN--~~Sk~skalk~L~A~-~RLlLTGTPI 1611 (1806)
+.||||+|-..+-...- .+.-....|||+||+.+|-. -.-+..+.+.++... -.+++|||--
T Consensus 140 npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp 206 (529)
T KOG0337|consen 140 NPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLP 206 (529)
T ss_pred CCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCc
Confidence 78999988876643221 12333468999999999843 345566677777443 5789999953
No 206
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=82.53 E-value=3 Score=57.41 Aligned_cols=169 Identities=16% Similarity=0.134 Sum_probs=102.7
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIE 1521 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~ 1521 (1806)
....||-|.++|+-. ..|.-+.+--.+|-||++. +- +... -..+-+|||-| .||+.-=...+.
T Consensus 262 ~~~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLC---YQ--lPA~-------l~~gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 262 HKGFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLC---YQ--LPAL-------LLGGVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred cccCChhHHHHHHHH----HcCCceEEEeecCCceeeE---ee--cccc-------ccCCceEEeccHHHHHHHHHHhhh
Confidence 356899999999733 2455577888999999952 20 0000 00157899999 667754444442
Q ss_pred HhhccCCceEEEEecCh--hHHHHHHhhh----cCCcEEEeeHHHHHhhHhh---hcccc----ceEEEEcccccccC--
Q 000237 1522 KFIDVSLMSTLQYVGSA--QDRIALREQF----DKHNVIITSYDVVRKDADY---LGQLL----WNYCILDEGHIIKN-- 1586 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~--~~R~~l~~~l----~~~dVVITSYe~Lr~di~~---L~~i~----w~~VILDEaH~IKN-- 1586 (1806)
+ ..+.-....+.. .++......+ ..+.++.+|-+.+...... +.... -.++|+||||-+..
T Consensus 326 ~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 326 K----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred h----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 2 223333333333 3333333333 3568899999988654322 22222 57899999997643
Q ss_pred -hhhHHHHHHHHh----hhcceEEeccCCCCCChhhHHhhhhhhCCCCCC
Q 000237 1587 -SKSKITVAVKQL----KAAHRLILSGTPIQNNITDLWSLFDFLMPGFLG 1631 (1806)
Q Consensus 1587 -~~Sk~skalk~L----~A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lg 1631 (1806)
.-..-|+.+..+ ...-.+.||+|--..--.|+...++.-+|..+.
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK 451 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec
Confidence 223334444444 333568899999888888888888888776543
No 207
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=82.43 E-value=2.2 Score=47.70 Aligned_cols=89 Identities=22% Similarity=0.248 Sum_probs=70.3
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHhhccCCceeeecccccchhhhhhhhhhhHHhHHhhHHHHHHccCCCCCchH
Q 000237 529 VRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDV 608 (1806)
Q Consensus 529 VRET~AQ~Lgall~~m~~~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKYlvAVR~dll~~lL~~Vl~a~~~GL~D~DDDV 608 (1806)
||-++-=+||-+...-| ..|......|..+.+++.+.||..+|+-|.+|+. .|++. +=+.++..++..|.|+|.+|
T Consensus 4 vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~--~d~ik-~k~~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL--EDMIK-VKGQLFSRILKLLVDENPEI 79 (178)
T ss_pred HHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--cCcee-ehhhhhHHHHHHHcCCCHHH
Confidence 67788888888776654 6677777888888888999999999999999985 77773 33444466667779999999
Q ss_pred HHhHHhhhhhhHH
Q 000237 609 RAVAADALIPTAA 621 (1806)
Q Consensus 609 raVAA~~L~Pia~ 621 (1806)
|+.|...|.=+..
T Consensus 80 r~~A~~~~~e~~~ 92 (178)
T PF12717_consen 80 RSLARSFFSELLK 92 (178)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998865543
No 208
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=82.38 E-value=1.4 Score=48.74 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=28.3
Q ss_pred HhhhcCCcEEEeeHHHHHhhHh--hh--ccccceEEEEcccccccC
Q 000237 1545 REQFDKHNVIITSYDVVRKDAD--YL--GQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1545 ~~~l~~~dVVITSYe~Lr~di~--~L--~~i~w~~VILDEaH~IKN 1586 (1806)
+.....+||||++|..+-.... .+ ....-..||+||||+|-+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 4456788999999998865421 22 123457899999999843
No 209
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=82.08 E-value=9.4 Score=51.24 Aligned_cols=68 Identities=25% Similarity=0.223 Sum_probs=50.8
Q ss_pred cchHHHHHHHHHHHHhhcCC-ceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1446 LRRYQQEGINWLAFLKRFKL-HGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1446 LRpYQ~eGV~wL~~l~~~~~-gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
+.-.|..++.-|......+. +-+|---.|.|||..+..++... .+|+|||+| ..+..||..|++.|
T Consensus 10 ~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~------------~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 10 PAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV------------NRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred CChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh------------CCCEEEEECCHHHHHHHHHHHHHh
Confidence 34578888877765554442 34677789999999887766431 169999999 56888999999999
Q ss_pred hc
Q 000237 1524 ID 1525 (1806)
Q Consensus 1524 ~~ 1525 (1806)
++
T Consensus 78 ~p 79 (655)
T TIGR00631 78 FP 79 (655)
T ss_pred CC
Confidence 94
No 210
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=82.07 E-value=8.3 Score=52.53 Aligned_cols=139 Identities=16% Similarity=0.257 Sum_probs=109.7
Q ss_pred cCCChhHHHHHHHHHHHhhccCChhhhHHHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccC
Q 000237 1256 SVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLG 1335 (1806)
Q Consensus 1256 ~~~~~q~lid~l~vl~~~~p~~~~~l~~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~ 1335 (1806)
-+.-.+-+..+++.|..++-.|.....+.....+|.++.++.-.++-+|.++-+|+=+++.......|... |+-++.
T Consensus 305 kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~---I~e~lk 381 (815)
T KOG1820|consen 305 KDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEA---ILEALK 381 (815)
T ss_pred cCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHH---HHHHhc
Confidence 34456788999999999999999999999999999999999999999999999999999996665555444 444555
Q ss_pred CccchhhccchhHHHHHHHhhcCCcccCCc-chhhhhhh-hccccCCchhhhhhhhhhhhccccc
Q 000237 1336 DMTSVHARQGAGMLISLLVQGLGAELVPYA-PLLVVPLL-RCMSDCDQSVRQSVTRSFASLVPLL 1398 (1806)
Q Consensus 1336 ~~~~~~~r~ga~~~~~~~~~~~~~~~~py~-~~l~~pll-~~msd~~~~vr~~~~~~fa~lv~l~ 1398 (1806)
+. +-..|.+-..++.+.+..++....+.- +--++|.+ ....|.+++||.++..+++.+.+.+
T Consensus 382 ~k-np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 382 GK-NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred CC-ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 43 345677778889999998886544432 33455654 5566999999999999999877654
No 211
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.95 E-value=13 Score=49.52 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=29.5
Q ss_pred ccceEEEEcccccccChhhHHHHHHHHh---hhcceEEeccCCCCCChhhHHh
Q 000237 1571 LLWNYCILDEGHIIKNSKSKITVAVKQL---KAAHRLILSGTPIQNNITDLWS 1620 (1806)
Q Consensus 1571 i~w~~VILDEaH~IKN~~Sk~skalk~L---~A~~RLlLTGTPIqNnl~ELwS 1620 (1806)
-.|.++||||+|++.. ......+|.| ....+++|..|=.+.=+.-+.|
T Consensus 123 gr~KViIIDEah~Ls~--~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrS 173 (700)
T PRK12323 123 GRFKVYMIDEVHMLTN--HAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 173 (700)
T ss_pred CCceEEEEEChHhcCH--HHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHH
Confidence 3589999999999932 2333445555 3445778887754443333443
No 212
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.87 E-value=28 Score=44.07 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=85.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc--cHHHHHHHHHHhhccCCceEEEEecChhHHHHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST--LVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIAL 1544 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S--Ll~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l 1544 (1806)
-++.=..|.|||.++.-+...+...... ...++.+|.=.+ .-..|+ ++.|+..-.+.+
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~-----~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv------------- 236 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDD-----KSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV------------- 236 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhcc-----CCCeEEEEeccCccHHHHHH--HHHHhhcCCcce-------------
Confidence 3667789999998876666543321100 114555555433 223333 556652112221
Q ss_pred HhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHH---HHHHHhhh--cceEEeccCCCCCChhhHH
Q 000237 1545 REQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKIT---VAVKQLKA--AHRLILSGTPIQNNITDLW 1619 (1806)
Q Consensus 1545 ~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~s---kalk~L~A--~~RLlLTGTPIqNnl~ELw 1619 (1806)
.++-+|+.+...+..+ ..+++||+|++.+.....-.+. +.+..... ..-+.|++|-=+|.+.+.+
T Consensus 237 --------~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 237 --------KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred --------EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 1122445554444444 3579999999987643221222 22222222 3458899999999999988
Q ss_pred hhhhhhCCC-----------CCCchhHHHHHhccchhhccc
Q 000237 1620 SLFDFLMPG-----------FLGTERQFQATYGKPLVAARD 1649 (1806)
Q Consensus 1620 SLL~FL~Pg-----------~Lgt~~~F~~~f~kPi~~~r~ 1649 (1806)
.-+..+.+. .+|.--.+...+..|+..-..
T Consensus 307 ~~~~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~ 347 (388)
T PRK12723 307 HQFSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTD 347 (388)
T ss_pred HHhcCCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeC
Confidence 888776554 245555566666777754433
No 213
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=81.19 E-value=6.5 Score=48.70 Aligned_cols=125 Identities=21% Similarity=0.318 Sum_probs=86.6
Q ss_pred HHHHHHHHhccchhhhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHHHHHHHHHhhccCChhhhHHHHhhhHH
Q 000237 1212 ALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPC 1291 (1806)
Q Consensus 1212 al~~l~~~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid~l~vl~~~~p~~~~~l~~~~~~llp~ 1291 (1806)
||..|.. -+.|-.=||.|-.++.+.+...... ....+..-|.++++++-.=+=.+.+-+.+++|.
T Consensus 198 aL~sL~t--D~gl~~LlPyf~~fI~~~v~~n~~~-------------nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~ 262 (343)
T cd08050 198 ALQSLRT--DPGLQQLLPYFVRFIAEGVTVNLDQ-------------NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPS 262 (343)
T ss_pred HHHHhcc--CCCchhhhhHHHHHHHHHHHhhhcc-------------cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHH
Confidence 4444443 2334566888888888866321110 344578888999999876555667888999999
Q ss_pred HHHhhc----------CChhHHHHHHHHHHHHhhhhccHH---HHHHHHHHhhcccCCcc-chhhccchhHHHH
Q 000237 1292 IFKCVC----------HSHVSVRLAASRCITSMAKSMTIN---VMAAVVENAIPMLGDMT-SVHARQGAGMLIS 1351 (1806)
Q Consensus 1292 ~~~~l~----------~~~~~vR~~aa~c~a~~~~~~~~~---~~~~~~~~~~p~l~~~~-~~~~r~ga~~~~~ 1351 (1806)
+++|+- -.+-.+|.-||++++.+|+.+... .-.++...+.-.+-|.. ......||+-.+.
T Consensus 263 vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~ 336 (343)
T cd08050 263 VLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLS 336 (343)
T ss_pred HHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH
Confidence 999983 355699999999999999875543 45566666665666554 4455899996554
No 214
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=80.52 E-value=35 Score=47.70 Aligned_cols=173 Identities=17% Similarity=0.177 Sum_probs=89.3
Q ss_pred chHHHHHHHHHHHHhh----cCCceEEEcCCCCchHHHHHHHHHHhHHHhhhc--------------C--------CccC
Q 000237 1447 RRYQQEGINWLAFLKR----FKLHGILCDDMGLGKTLQASAIVASDIAERRAS--------------N--------SIEE 1500 (1806)
Q Consensus 1447 RpYQ~eGV~wL~~l~~----~~~gGILADdMGLGKTlqaIalia~l~~~r~~~--------------~--------~~~~ 1500 (1806)
+.+|-.+++-+..+.. .|.-|+--..+|.|||+.-.-++..+....... + +..+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 5689999987765432 333457778999999998777775543221100 0 0000
Q ss_pred CCcEEEEeccc----cHHHHHHHHHH-----------hhcc-CCceEEEEecChhHHH--------HHHhhhcCCcEEEe
Q 000237 1501 IHPSLIICPST----LVGHWAFEIEK-----------FIDV-SLMSTLQYVGSAQDRI--------ALREQFDKHNVIIT 1556 (1806)
Q Consensus 1501 ~~ptLIVcP~S----Ll~qW~~Ei~k-----------f~~~-p~l~vliy~Gs~~~R~--------~l~~~l~~~dVVIT 1556 (1806)
.-.-|++=.+ |..++.++.+. |+.. .+-+++.|.|.-.+-. .....+-.+.|+|+
T Consensus 490 -ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 490 -DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred -cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEe
Confidence 1112222222 33445553211 2211 1112455666532110 01112234678888
Q ss_pred eHHHHHhhHhhhc---------cccceEEEEcccccccChhhHHHHHHHHh---hhcceEEeccCCCCCChhhHHh
Q 000237 1557 SYDVVRKDADYLG---------QLLWNYCILDEGHIIKNSKSKITVAVKQL---KAAHRLILSGTPIQNNITDLWS 1620 (1806)
Q Consensus 1557 SYe~Lr~di~~L~---------~i~w~~VILDEaH~IKN~~Sk~skalk~L---~A~~RLlLTGTPIqNnl~ELwS 1620 (1806)
|-+.+-.-...++ ...-..+|+||.|-+-.........+..+ -....++||||--..-...|..
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~~ 644 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLFR 644 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHH
Confidence 8877754432222 33356799999998754433333222222 3466799999987665555544
No 215
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=80.50 E-value=5.7 Score=53.81 Aligned_cols=162 Identities=17% Similarity=0.114 Sum_probs=100.5
Q ss_pred chHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhhc
Q 000237 1447 RRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFID 1525 (1806)
Q Consensus 1447 RpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~~ 1525 (1806)
-.+|++-+ +.-..+...++...+-.|||...-..+-...+. .+.+-++-|+| ++++.|=..++...+.
T Consensus 513 d~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe-------sD~~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 513 DEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-------SDSDVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred cHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhh-------cCCCEEEEecchHHHhhhhhHHHHHhhc
Confidence 34676644 344566678888899999999876666544432 22366788889 7799999998887764
Q ss_pred cCCceEEE-EecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh----h-ccccceEEEEcccccccChh-hHHHHHHHHh
Q 000237 1526 VSLMSTLQ-YVGSAQDRIALREQFDKHNVIITSYDVVRKDADY----L-GQLLWNYCILDEGHIIKNSK-SKITVAVKQL 1598 (1806)
Q Consensus 1526 ~p~l~vli-y~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~----L-~~i~w~~VILDEaH~IKN~~-Sk~skalk~L 1598 (1806)
.+.+.-.+ ..|.-....+ ..--.+.|.||--+.+....-. . .--+..|+|+||.|.|.|.. ......+-.+
T Consensus 582 ~~t~~rg~sl~g~ltqEYs--inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l 659 (1330)
T KOG0949|consen 582 TKTFLRGVSLLGDLTQEYS--INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL 659 (1330)
T ss_pred cCccccchhhHhhhhHHhc--CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh
Confidence 34333222 2222211111 1122678999998877643211 0 01235799999999998844 4555555555
Q ss_pred hhcceEEeccCCCCCChhhHHhhhh
Q 000237 1599 KAAHRLILSGTPIQNNITDLWSLFD 1623 (1806)
Q Consensus 1599 ~A~~RLlLTGTPIqNnl~ELwSLL~ 1623 (1806)
-.--.++||+|- +|+..++.-++
T Consensus 660 i~CP~L~LSATi--gN~~l~qkWln 682 (1330)
T KOG0949|consen 660 IPCPFLVLSATI--GNPNLFQKWLN 682 (1330)
T ss_pred cCCCeeEEeccc--CCHHHHHHHHH
Confidence 555678899984 56655554444
No 216
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=80.27 E-value=14 Score=42.18 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=24.3
Q ss_pred eEEEEcccccccChh---hHHHHHHHHh-hhcceEEeccCCC
Q 000237 1574 NYCILDEGHIIKNSK---SKITVAVKQL-KAAHRLILSGTPI 1611 (1806)
Q Consensus 1574 ~~VILDEaH~IKN~~---Sk~skalk~L-~A~~RLlLTGTPI 1611 (1806)
+++|+||.|.+.... ......+..+ ..+.++++|+|.-
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 689999999986432 2334444433 2346788888854
No 217
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=79.93 E-value=5.7 Score=54.03 Aligned_cols=122 Identities=22% Similarity=0.184 Sum_probs=72.6
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cH---HHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LV---GHWAF 1518 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll---~qW~~ 1518 (1806)
....++-|.-|.--| +.|-|.=-.+|=|||+++...+ ++..... +.+-||++.. |. ..|..
T Consensus 74 G~r~ydvQlig~l~L------~~G~IaEm~TGEGKTL~a~l~a-yl~aL~G--------~~VhVvT~NdyLA~RD~e~m~ 138 (870)
T CHL00122 74 GLRHFDVQLIGGLVL------NDGKIAEMKTGEGKTLVATLPA-YLNALTG--------KGVHIVTVNDYLAKRDQEWMG 138 (870)
T ss_pred CCCCCchHhhhhHhh------cCCccccccCCCCchHHHHHHH-HHHHhcC--------CceEEEeCCHHHHHHHHHHHH
Confidence 344566787776333 2344666789999999654333 2222111 5778888855 44 57999
Q ss_pred HHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeH-----HHHHhhH----hhhccccceEEEEcccccc
Q 000237 1519 EIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSY-----DVVRKDA----DYLGQLLWNYCILDEGHII 1584 (1806)
Q Consensus 1519 Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSY-----e~Lr~di----~~L~~i~w~~VILDEaH~I 1584 (1806)
.+.+|+| +++....+...... +...-.+||+-+|- +.+|... +......++++|+||+..+
T Consensus 139 pvy~~LG---Lsvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 139 QIYRFLG---LTVGLIQEGMSSEE--RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHHHHcC---CceeeeCCCCChHH--HHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 9999984 56665544322111 12223567777764 3444332 2233456899999999876
No 218
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.61 E-value=9.2 Score=49.35 Aligned_cols=41 Identities=24% Similarity=0.147 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhcCC--ce-EEEcCCCCchHHHHHHHHHHhH
Q 000237 1449 YQQEGINWLAFLKRFKL--HG-ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~~~~~--gG-ILADdMGLGKTlqaIalia~l~ 1489 (1806)
.|...+..|......+. |. ++.-+.|.|||..+..++..+.
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45555555544333333 33 8889999999999888876543
No 219
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=78.46 E-value=3.1e+02 Score=38.76 Aligned_cols=346 Identities=19% Similarity=0.143 Sum_probs=208.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHh--------hcccCCcCCCccccchhhh--------HHHHHHHHhhcCChhhHHHHHH
Q 000237 491 RHSWQKNCEFLQDCAIRFLCILS--------LDRFGDYVSDQVVAPVRET--------CAQALGAAFKYMHPSLVYETLY 554 (1806)
Q Consensus 491 ~~~~~~n~~wLeDlaiRlLCVla--------LDRFGDyVSDqVVAPVRET--------~AQ~Lgall~~m~~~~v~~~~~ 554 (1806)
-++...+.--+.+.|.+++-=+. |-+|=|++-|+ |=+|| |=++|.+++||++...+..+.+
T Consensus 181 ~~~Yl~~~~~~r~~aalllsk~~sR~D~~~~~~~Fl~~~l~~---~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~ 257 (1133)
T KOG1943|consen 181 FENYLISSGILRRSAALLLSKLFSRTDVKDLLLSFLDWLLDC---PSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSD 257 (1133)
T ss_pred HHHHHhccchhHHHHHHHHHHHcccccHHHHHHHHHHHhhcc---cchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhh
Confidence 33444444466777777765433 44566664443 44455 4589999999999998777776
Q ss_pred HHHhhccCCceeeecc-cccchhhhhhhhh------------------------------------------------hh
Q 000237 555 ILLQMQRRPEWEIRHG-SLLGIKYLVAVRQ------------------------------------------------EM 585 (1806)
Q Consensus 555 iLl~~q~~~~WEvrHG-gLLGiKYlvAVR~------------------------------------------------dl 585 (1806)
..+++... .=|.--| +++- ||+|-+=| |
T Consensus 258 ~~~r~L~~-~~~~~d~~~llr-KllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~ed- 334 (1133)
T KOG1943|consen 258 TGLRMLSV-CRESNDGQSLLR-KLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGED- 334 (1133)
T ss_pred hhhHhhcc-cccccccHhHHH-HHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccc-
Confidence 66655433 1111122 2221 23322222 1
Q ss_pred HHhHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHh-hchhhHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhc
Q 000237 586 LHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVA-LDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYS 664 (1806)
Q Consensus 586 l~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~-~~~~~l~~il~~LWd~L~~lDDLs~St~svM~LLa~l~s 664 (1806)
.++.+..|+...+.||.|.|-+||=-||--+-=|+..+.. +-.+.|.+++. ++.-.+|=++=-|+. -.||+|--
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid----~~~p~e~~~aWHgac-LaLAELA~ 409 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID----LFNPAEDDSAWHGAC-LALAELAL 409 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH----hcCcCCchhHHHHHH-HHHHHHHh
Confidence 3578889999999999999999999999999888887763 22344555554 777776544444443 36677632
Q ss_pred C--------chhhHHhhccccccccccchhcccccCCCCCCCCCCchhhhcccccccccccccchhhHHHHHHHHHHHHH
Q 000237 665 Q--------EEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLE 736 (1806)
Q Consensus 665 ~--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~ 736 (1806)
- ++|++.+-. + ++|.+.. +-+-+=++||-||.--.=+|..
T Consensus 410 rGlLlps~l~dVvplI~k-a----L~Yd~~~---------------------------G~~s~G~~VRDaAcY~~WAf~R 457 (1133)
T KOG1943|consen 410 RGLLLPSLLEDVVPLILK-A----LHYDVRR---------------------------GQHSVGQHVRDAACYVCWAFAR 457 (1133)
T ss_pred cCCcchHHHHHHHHHHHH-H----hhhhhhh---------------------------cccccccchHHHHHHHHHHHHh
Confidence 1 245544421 1 1221110 1122346899999999999976
Q ss_pred hccccccccCCCCCCCchhchhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc--CC-hhhHHHhh-hhhHH------HH
Q 000237 737 AGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQ--SP-VEDLEAAG-GKFMS------SW 806 (1806)
Q Consensus 737 ~~~~~~~~~~~~~~~W~~~i~~~~LR~vFQnlLlE~~~~I~~~s~~vW~~ll~--~~-~~~~~~~~-~~~~~------~w 806 (1806)
.-+. ++ +.++++.+.-.+-++.++.+.-.++..|..+....+- .. +..+.-+. ..|++ .|
T Consensus 458 ays~---------~~-l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy 527 (1133)
T KOG1943|consen 458 AYSP---------SD-LKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCY 527 (1133)
T ss_pred cCCh---------hh-hhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHH
Confidence 5432 21 2347788888888999999999999999999998883 22 22221111 11211 14
Q ss_pred HHHhhcCCCCCCCCCccccccCCCccchhhHHHHHhhhhcccCCCCCCCCCCcccCCCCCCcceeecCCcc-hhhh---h
Q 000237 807 IELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAVKLENDSSGSVDLPQERNGDTSTNSVKITVGSDL-EMSV---T 882 (1806)
Q Consensus 807 l~L~mtP~g~~~d~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~n~d~~~~~~~~~~ggd~-~lv~---~ 882 (1806)
..+.+.=.+-+ .+ .. + ++. --+ ..+. .
T Consensus 528 ~~l~~~ia~~~---~y-----------~~-----------------------------~-----~f~-~L~t~Kv~HWd~ 558 (1133)
T KOG1943|consen 528 LDLCVSIAEFS---GY-----------RE-----------------------------P-----VFN-HLLTKKVCHWDV 558 (1133)
T ss_pred HHHhHHHHhhh---hH-----------HH-----------------------------H-----HHH-HHHhcccccccH
Confidence 44432200000 00 00 0 000 000 0011 5
Q ss_pred hHHHHHHHHHHHHHhhhccchhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHhhcc
Q 000237 883 NTRVVTASALGIFASKLHEGSIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIK 938 (1806)
Q Consensus 883 ~tRi~aA~alG~l~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvi~ewa~~~~ 938 (1806)
..|-.||.||-.+.-.-|....+.+...|+.+..|+.+.-|..+-+...|......
T Consensus 559 ~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~ 614 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALR 614 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhh
Confidence 77899999999966666666677778889999999999999888887777665443
No 220
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=77.71 E-value=22 Score=47.71 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1450 QQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|...+..|......+ .|. |+.-+.|.|||..+..+...+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 444444444433332 244 78899999999999888876655
No 221
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=77.16 E-value=4.7e+02 Score=40.12 Aligned_cols=168 Identities=15% Similarity=0.117 Sum_probs=93.6
Q ss_pred hHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchhhHHHHHHHHHHhhcCCCCCCcchH------------------
Q 000237 592 YVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTS------------------ 653 (1806)
Q Consensus 592 ~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~~l~~il~~LWd~L~~lDDLs~St~------------------ 653 (1806)
+++|.++.-|.+.|..++.+||.+|--++.. -..+ .+..||+.|.. || +-...
T Consensus 530 GAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~---~d~~----~I~~Lv~LLls-dd-~~~~~~aL~vLgnIlsl~~~~d~ 600 (2102)
T PLN03200 530 GAVPALLWLLKNGGPKGQEIAAKTLTKLVRT---ADAA----TISQLTALLLG-DL-PESKVHVLDVLGHVLSVASLEDL 600 (2102)
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc---cchh----HHHHHHHHhcC-CC-hhHHHHHHHHHHHHHhhcchhHH
Confidence 6788888888999999999999998665421 1112 22445555433 22 11111
Q ss_pred --------HHHHHHHHHhcCchhhHHhhccccccccccchhcccccCCCCCCCCCCchhhhcccccccccccccchhhHH
Q 000237 654 --------SVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRH 725 (1806)
Q Consensus 654 --------svM~LLa~l~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~ 725 (1806)
...+.|.+|..++.- ..+..| ..-+..+..++.+.-+.......+|.|.=.+++.=+.||+
T Consensus 601 ~~~g~~~~ggL~~Lv~LL~sgs~--~ikk~A---------a~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~k 669 (2102)
T PLN03200 601 VREGSAANDALRTLIQLLSSSKE--ETQEKA---------ASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVAT 669 (2102)
T ss_pred HHHhhhccccHHHHHHHHcCCCH--HHHHHH---------HHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHH
Confidence 223344444443311 011111 0111122222223223344677788999999999999999
Q ss_pred HHHHHHHHHHHhccccccccCCCCCCCchhchhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc
Q 000237 726 SAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQ 789 (1806)
Q Consensus 726 a~l~tL~~ll~~~~~~~~~~~~~~~~W~~~i~~~~LR~vFQnlLlE~~~~I~~~s~~vW~~ll~ 789 (1806)
.+-.+|..+...++..+ ....+...++.- +=++|-..+.++.+.+..+-.+++.
T Consensus 670 eAA~AL~nL~~~~~~~q---------~~~~v~~GaV~p-L~~LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 670 QSARALAALSRSIKENR---------KVSYAAEDAIKP-LIKLAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred HHHHHHHHHHhCCCHHH---------HHHHHHcCCHHH-HHHHHhCCChHHHHHHHHHHHHHHc
Confidence 99999999986443211 001122223332 3455566777888887777777765
No 222
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.15 E-value=4.9 Score=51.54 Aligned_cols=178 Identities=19% Similarity=0.219 Sum_probs=109.2
Q ss_pred eecccccchhhh-hhhhhhhHHhHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchhhHHHHHHHHHHhhcCC
Q 000237 567 IRHGSLLGIKYL-VAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDL 645 (1806)
Q Consensus 567 vrHGgLLGiKYl-vAVR~dll~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~~l~~il~~LWd~L~~l 645 (1806)
-|-|||.|+-=. +|-=.|-.+ ++..++|-|+..+.|+|+-||--|-.+|--||.---.--..-.+.|...||..-.|-
T Consensus 59 ~rkGgLiGlAA~~iaLg~~~~~-Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDs 137 (675)
T KOG0212|consen 59 MRKGGLIGLAAVAIALGIKDAG-YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADS 137 (675)
T ss_pred cccchHHHHHHHHHHhccccHH-HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCC
Confidence 355999996433 222334445 899999999999999999999999999977765321111223455666666555443
Q ss_pred CCCCcchHHHHHHHHHHhcCchhhHHhhccccccccccchhcccccCCCCCCCCCCchhhhcccccccccccccchhhHH
Q 000237 646 DDLSPSTSSVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRH 725 (1806)
Q Consensus 646 DDLs~St~svM~LLa~l~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~ 725 (1806)
-.++-+--.||-.|... +.... .+.| + +..++|-|---+--.=.++|.
T Consensus 138 ---d~~V~~~aeLLdRLikd-----IVte~--~~tF--------------------s--L~~~ipLL~eriy~~n~~tR~ 185 (675)
T KOG0212|consen 138 ---DQNVRGGAELLDRLIKD-----IVTES--ASTF--------------------S--LPEFIPLLRERIYVINPMTRQ 185 (675)
T ss_pred ---ccccccHHHHHHHHHHH-----hcccc--cccc--------------------C--HHHHHHHHHHHHhcCCchHHH
Confidence 23333333455444321 11100 0111 2 445444332222233458999
Q ss_pred HHHHHHHHHHHhccccccccCCCCCCCchhchhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc
Q 000237 726 SAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQ 789 (1806)
Q Consensus 726 a~l~tL~~ll~~~~~~~~~~~~~~~~W~~~i~~~~LR~vFQnlLlE~~~~I~~~s~~vW~~ll~ 789 (1806)
.++.=|..|.++++...+ ..++++++-+| |.|-++.++|+++..-+-..+|.
T Consensus 186 flv~Wl~~Lds~P~~~m~-------~yl~~~ldGLf-----~~LsD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 186 FLVSWLYVLDSVPDLEMI-------SYLPSLLDGLF-----NMLSDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred HHHHHHHHHhcCCcHHHH-------hcchHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHH
Confidence 999999999988876332 34344444444 67899999999988887777765
No 223
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=76.69 E-value=6.3 Score=51.73 Aligned_cols=146 Identities=18% Similarity=0.158 Sum_probs=78.4
Q ss_pred hcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-----cHHHHHHHHHHhhccCCceEEEEec
Q 000237 1462 RFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-----LVGHWAFEIEKFIDVSLMSTLQYVG 1536 (1806)
Q Consensus 1462 ~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-----Ll~qW~~Ei~kf~~~p~l~vliy~G 1536 (1806)
..+.-.|+.-|+|.|||.|.=-++..... ...+.+-+.=|.- |..-=.+|..--.|...--.+-|..
T Consensus 64 e~nqvlIviGeTGsGKSTQipQyL~eaG~--------~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed 135 (674)
T KOG0922|consen 64 EDNQVLIVIGETGSGKSTQIPQYLAEAGF--------ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFED 135 (674)
T ss_pred HHCCEEEEEcCCCCCccccHhHHHHhccc--------ccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecc
Confidence 45566799999999999998777653221 1113433333533 3333444443322211000111221
Q ss_pred ChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhh-ccccceEEEEcccccccChhhHHHH----HHHHh---hhc-ceEEec
Q 000237 1537 SAQDRIALREQFDKHNVIITSYDVVRKDADYL-GQLLWNYCILDEGHIIKNSKSKITV----AVKQL---KAA-HRLILS 1607 (1806)
Q Consensus 1537 s~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L-~~i~w~~VILDEaH~IKN~~Sk~sk----alk~L---~A~-~RLlLT 1607 (1806)
... .+-.|..+|=..+-+.+-.= .--.+.+||+||||. .|-.+. .++++ +.. +.+++|
T Consensus 136 ~ts---------~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHE----Rsl~TDiLlGlLKki~~~R~~LklIimS 202 (674)
T KOG0922|consen 136 STS---------KDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHE----RSLHTDILLGLLKKILKKRPDLKLIIMS 202 (674)
T ss_pred cCC---------CceeEEEecchHHHHHHhcCCccccccEEEEechhh----hhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 111 13357778877776654211 123589999999995 333333 33333 444 346789
Q ss_pred cCCCCCChhhHHhhhhhh-CCC
Q 000237 1608 GTPIQNNITDLWSLFDFL-MPG 1628 (1806)
Q Consensus 1608 GTPIqNnl~ELwSLL~FL-~Pg 1628 (1806)
||-=-..+.++|.-...+ -||
T Consensus 203 ATlda~kfS~yF~~a~i~~i~G 224 (674)
T KOG0922|consen 203 ATLDAEKFSEYFNNAPILTIPG 224 (674)
T ss_pred eeecHHHHHHHhcCCceEeecC
Confidence 998777777777654433 344
No 224
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=76.60 E-value=3.1 Score=54.64 Aligned_cols=172 Identities=13% Similarity=0.148 Sum_probs=107.1
Q ss_pred ccCcccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHH
Q 000237 1437 KLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGH 1515 (1806)
Q Consensus 1437 ~ip~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~q 1515 (1806)
..|........|||.+-.+.|.... -....+.-..-+|||...+.++.+..... ..|+|+|.|.- ....
T Consensus 8 ~~pG~w~~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--------P~~~l~v~Pt~~~a~~ 77 (557)
T PF05876_consen 8 AEPGPWRTDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQD--------PGPMLYVQPTDDAAKD 77 (557)
T ss_pred CCCCCCCCCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeC--------CCCEEEEEEcHHHHHH
Confidence 3456678899999999887653221 23457777888999998877776544432 27999999954 7777
Q ss_pred HHH-HHHHhhc-cCCceEEEEec--ChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccc----cCh
Q 000237 1516 WAF-EIEKFID-VSLMSTLQYVG--SAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHII----KNS 1587 (1806)
Q Consensus 1516 W~~-Ei~kf~~-~p~l~vliy~G--s~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~I----KN~ 1587 (1806)
|.. .|...+. .|.++-.+... ....-......+....+.++...+- ..|......++++||...+ ++.
T Consensus 78 ~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~----~~l~s~~~r~~~~DEvD~~p~~~~~e 153 (557)
T PF05876_consen 78 FSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP----SNLRSRPARYLLLDEVDRYPDDVGGE 153 (557)
T ss_pred HHHHHHHHHHHhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCC----cccccCCcCEEEEechhhccccCccC
Confidence 875 4555442 13333222110 0011112233444455666655433 4567788999999999987 333
Q ss_pred hhHHHHHHH---HhhhcceEEeccCCCCCChhhHHhhh
Q 000237 1588 KSKITVAVK---QLKAAHRLILSGTPIQNNITDLWSLF 1622 (1806)
Q Consensus 1588 ~Sk~skalk---~L~A~~RLlLTGTPIqNnl~ELwSLL 1622 (1806)
.+....+.+ .+..+.++++..||.......++.++
T Consensus 154 Gdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 154 GDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred CCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 344444444 44567899999999987655555554
No 225
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=76.48 E-value=9 Score=46.37 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcCC--ceEEEcCCCCchHHHHHHHHHHhH
Q 000237 1451 QEGINWLAFLKRFKL--HGILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1451 ~eGV~wL~~l~~~~~--gGILADdMGLGKTlqaIalia~l~ 1489 (1806)
.+.+.++......+. +-++.-+.|.|||..+.++.....
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 334445444444444 568889999999999988876543
No 226
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=76.46 E-value=21 Score=46.51 Aligned_cols=117 Identities=26% Similarity=0.286 Sum_probs=81.0
Q ss_pred hHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchhhH--HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhcC
Q 000237 588 GLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTL--HSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQ 665 (1806)
Q Consensus 588 ~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~~l--~~il~~LWd~L~~lDDLs~St~svM~LLa~l~s~ 665 (1806)
.+++...+.+..||..+++.||..|..+|--++.+-... -+.+ +.++..+..||.+- |.+. ....+++|++|.++
T Consensus 73 ~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~-~~~~~~~~l~~~i~~~L~~~-d~~V-a~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 73 SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGA-AQLLVDNELLPLIIQCLRDP-DLSV-AKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHH-HHHhcCccHHHHHHHHHcCC-cHHH-HHHHHHHHHHHhCC
Confidence 467888899999999999999999999975554332111 1111 45788899999663 3333 44668899999999
Q ss_pred chhhHHhhccccccccccchhcccccCCCCCCCCCCchhhhcccccccccccccchhhHHHHHHHHHHHHHhc
Q 000237 666 EEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAG 738 (1806)
Q Consensus 666 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~~ 738 (1806)
+.-++.+.. +.+++.|...+.++=..||.-++.++-.+....
T Consensus 150 ~~~~~~l~~-------------------------------~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 150 PEGLEQLFD-------------------------------SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred chhHHHHhC-------------------------------cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Confidence 876654421 112455777788877778988888777765543
No 227
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=76.05 E-value=22 Score=45.34 Aligned_cols=56 Identities=20% Similarity=0.257 Sum_probs=37.6
Q ss_pred cceEEEEcccccccChhhHHHHHHHHh-h-----hcceEEeccCCCCCChhhHHhhhhhhCCC
Q 000237 1572 LWNYCILDEGHIIKNSKSKITVAVKQL-K-----AAHRLILSGTPIQNNITDLWSLFDFLMPG 1628 (1806)
Q Consensus 1572 ~w~~VILDEaH~IKN~~Sk~skalk~L-~-----A~~RLlLTGTPIqNnl~ELwSLL~FL~Pg 1628 (1806)
.+++||+|.+-+...... ....+..+ . ....++|++|+-++.+.+++..|..+.+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~-~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~ 360 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKR-LIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLD 360 (424)
T ss_pred CCCEEEEeCCCCCCCCHH-HHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCC
Confidence 479999999866433222 22233333 2 24468899999888999999888877653
No 228
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.44 E-value=14 Score=46.14 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhH
Q 000237 1449 YQQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~ 1489 (1806)
-|...+..+......+ .|. ++.=+.|.|||..+-+++..+.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 3555555554433332 245 7889999999998888876543
No 229
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=75.25 E-value=17 Score=42.56 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHhhcCCc-eEEEcCCCCchHHHHHHHHH
Q 000237 1448 RYQQEGINWLAFLKRFKLH-GILCDDMGLGKTLQASAIVA 1486 (1806)
Q Consensus 1448 pYQ~eGV~wL~~l~~~~~g-GILADdMGLGKTlqaIalia 1486 (1806)
+.+..+++.+......+.+ .+|.=+.|.|||..+-.++.
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3445667666554444443 57889999999987766543
No 230
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=75.17 E-value=1.9 Score=43.23 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=68.5
Q ss_pred hhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHH----HHHHHhhcccCCccchhhccchhHHHHHHHhhcCCcccC
Q 000237 1288 LLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMA----AVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVP 1363 (1806)
Q Consensus 1288 llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~----~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~p 1363 (1806)
.+|.++.++++...-+|..+..|++.+|+..+...-. -+++.+++++++. +...|..+..++..+...-.....-
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcHHHHHH
Confidence 4678888889999999999999999999864322222 4455566666654 4566777888888876532210000
Q ss_pred Ccch-hhhhhhhccccCCchhhhhhhhhhhhc
Q 000237 1364 YAPL-LVVPLLRCMSDCDQSVRQSVTRSFASL 1394 (1806)
Q Consensus 1364 y~~~-l~~pll~~msd~~~~vr~~~~~~fa~l 1394 (1806)
+..- ++.-+++.+.+.+..++..+...+..+
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 0001 223355778888888888877776654
No 231
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=74.98 E-value=6.4 Score=47.39 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=19.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~~ 1490 (1806)
+-++.-++|.|||..+-++...++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4477789999999998887766554
No 232
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=73.80 E-value=19 Score=48.37 Aligned_cols=79 Identities=20% Similarity=0.176 Sum_probs=55.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCC-ceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecc-ccHHHHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKL-HGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS-TLVGHWAFE 1519 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~-gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~-SLl~qW~~E 1519 (1806)
-...|.++|..++.-+......+. +.++---.|.|||+.+.+++... .+|+|||+|. ....+|.++
T Consensus 9 ~~~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~~------------~r~vLIVt~~~~~A~~l~~d 76 (652)
T PRK05298 9 SPYKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIARL------------QRPTLVLAHNKTLAAQLYSE 76 (652)
T ss_pred cCCCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHHh------------CCCEEEEECCHHHHHHHHHH
Confidence 345788999999977655544332 34666778999998866544321 1689999996 577899999
Q ss_pred HHHhhccCCceEEEE
Q 000237 1520 IEKFIDVSLMSTLQY 1534 (1806)
Q Consensus 1520 i~kf~~~p~l~vliy 1534 (1806)
+..|++ ...|..|
T Consensus 77 L~~~~~--~~~v~~f 89 (652)
T PRK05298 77 FKEFFP--ENAVEYF 89 (652)
T ss_pred HHHhcC--CCeEEEe
Confidence 999984 3334444
No 233
>PRK07952 DNA replication protein DnaC; Validated
Probab=73.22 E-value=68 Score=38.15 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHh-hcC---CceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHH
Q 000237 1448 RYQQEGINWLAFLK-RFK---LHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEK 1522 (1806)
Q Consensus 1448 pYQ~eGV~wL~~l~-~~~---~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~k 1522 (1806)
+.|..++..+.... ... .+-+|.-..|.|||..+.+++..+...+ .+++++ -+..|..++..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g---------~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG---------KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC---------CeEEEE----EHHHHHHHHHH
Confidence 45666665554322 111 2348889999999999999987765421 344444 24566666554
No 234
>PRK08084 DNA replication initiation factor; Provisional
Probab=72.99 E-value=25 Score=41.17 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=17.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 000237 1466 HGILCDDMGLGKTLQASAIVAS 1487 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~ 1487 (1806)
.-+|.=..|.|||.-+.++...
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3488889999999877666544
No 235
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=72.81 E-value=18 Score=47.18 Aligned_cols=155 Identities=22% Similarity=0.231 Sum_probs=94.2
Q ss_pred HHhhhhhHHHHHHHHHHHHhhcccCCcCCCccccchhhhHHHHHHHHhhcCChhhH-HHHHHHHHhhccCCceeeecccc
Q 000237 494 WQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLV-YETLYILLQMQRRPEWEIRHGSL 572 (1806)
Q Consensus 494 ~~~n~~wLeDlaiRlLCVlaLDRFGDyVSDqVVAPVRET~AQ~Lgall~~m~~~~v-~~~~~iLl~~q~~~~WEvrHGgL 572 (1806)
...-..+++++..++ + ++=+-+-..||| +.|...|..+|.-+++..+ ......|.....++.=.||.-++
T Consensus 28 ~~~~~~~l~~~~~~~--l--f~~L~~~~~e~v-----~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l 98 (503)
T PF10508_consen 28 ELSSSPFLERLPEPV--L--FDCLNTSNREQV-----ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLAL 98 (503)
T ss_pred HHhhhhHHHhchHHH--H--HHHHhhcChHHH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 334455777776666 1 122223345554 4566888888888888764 34444445555565556666666
Q ss_pred cchhhhhhhhhhhHHhHH--hhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchhhHHHH-----HHHHHHhhcCC
Q 000237 573 LGIKYLVAVRQEMLHGLL--GYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSI-----VMLLWDILLDL 645 (1806)
Q Consensus 573 LGiKYlvAVR~dll~~lL--~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~~l~~i-----l~~LWd~L~~l 645 (1806)
--|.+.+--....+. ++ ..+++.++..|.|+|..|...|+.+|..++.+- ..+..+ +..|++.+..-
T Consensus 99 ~~l~~~~~~~~~~~~-~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-----~~~~~l~~~~~~~~L~~l~~~~ 172 (503)
T PF10508_consen 99 KQLGRIARHSEGAAQ-LLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-----EGLEQLFDSNLLSKLKSLMSQS 172 (503)
T ss_pred HHHHHHhcCCHHHHH-HhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-----hhHHHHhCcchHHHHHHHHhcc
Confidence 666666544443333 33 678899999999999999999999998887532 222333 55566665543
Q ss_pred CCCCcchHHHHHHHHHHhcC
Q 000237 646 DDLSPSTSSVMNLLAEIYSQ 665 (1806)
Q Consensus 646 DDLs~St~svM~LLa~l~s~ 665 (1806)
+|.. ---|.+++.+++++
T Consensus 173 ~~~v--R~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 173 SDIV--RCRVYELLVEIASH 190 (503)
T ss_pred CHHH--HHHHHHHHHHHHhc
Confidence 3311 12355566666554
No 236
>CHL00181 cbbX CbbX; Provisional
Probab=72.59 E-value=9 Score=46.32 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=19.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhH
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~ 1489 (1806)
+-+|.=.+|.|||..+-++...++
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 347889999999999988876543
No 237
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=72.42 E-value=6.1 Score=51.09 Aligned_cols=135 Identities=16% Similarity=0.208 Sum_probs=78.1
Q ss_pred chHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhh-
Q 000237 1447 RRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFI- 1524 (1806)
Q Consensus 1447 RpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~- 1524 (1806)
.|-|..++-.+. .+..++-|..+|.|||+-=++=+......... .........+|+.| ..|..|-..|..+|.
T Consensus 160 t~iq~~aipvfl----~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~ 234 (593)
T KOG0344|consen 160 TPIQKQAIPVFL----EKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-EKHKVGLRALILSPTRELAAQIYREMRKYSI 234 (593)
T ss_pred Ccccchhhhhhh----cccceEEeccCCCcchhhhhhHHHHHHHHhhc-ccCccceEEEEecchHHHHHHHHHHHHhcCC
Confidence 345666765553 33467889999999976443333222211111 11111257799999 668899999999997
Q ss_pred -ccCCceEEEEecCh--hHHHHHHhhhcCCcEEEeeHHHHHhhHhh----hccccceEEEEcccccccCh
Q 000237 1525 -DVSLMSTLQYVGSA--QDRIALREQFDKHNVIITSYDVVRKDADY----LGQLLWNYCILDEGHIIKNS 1587 (1806)
Q Consensus 1525 -~~p~l~vliy~Gs~--~~R~~l~~~l~~~dVVITSYe~Lr~di~~----L~~i~w~~VILDEaH~IKN~ 1587 (1806)
....++...+.... ..+.... .-..++++|.|--.+...+.. +.-.....+|+||+..+.++
T Consensus 235 ~~~t~~~a~~~~~~~~~~qk~a~~-~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 235 DEGTSLRAAQFSKPAYPSQKPAFL-SDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP 303 (593)
T ss_pred CCCCchhhhhcccccchhhccchh-HHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh
Confidence 33334433333321 1111111 113567888777776655433 12223567899999999988
No 238
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.36 E-value=52 Score=41.92 Aligned_cols=127 Identities=11% Similarity=0.177 Sum_probs=67.9
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc----cHHHHHHHHHHhhccCCceEEEEecChhHHHH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST----LVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA 1543 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S----Ll~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~ 1543 (1806)
.|.=..|.|||..+..+...+...+ .++.+|.-.. .+.||. .|.....+.+..
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~~~G---------kkVglI~aDt~RiaAvEQLk----~yae~lgipv~v---------- 301 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFHGKK---------KTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVIA---------- 301 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcC---------CcEEEEecCCcchHHHHHHH----HHhhhcCCcEEe----------
Confidence 4556799999988877766543211 3555555422 344554 343212222221
Q ss_pred HHhhhcCCcEEEeeHHHHHhhHhhhcc-ccceEEEEcccccccChhhHHHHHHHHh---hhc-ceEEeccCCCCCChhhH
Q 000237 1544 LREQFDKHNVIITSYDVVRKDADYLGQ-LLWNYCILDEGHIIKNSKSKITVAVKQL---KAA-HRLILSGTPIQNNITDL 1618 (1806)
Q Consensus 1544 l~~~l~~~dVVITSYe~Lr~di~~L~~-i~w~~VILDEaH~IKN~~Sk~skalk~L---~A~-~RLlLTGTPIqNnl~EL 1618 (1806)
..+.+.+...+..+.. ..+++||+|-+=+..+...........+ ... .-+.|++|--.+...+.
T Consensus 302 -----------~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i 370 (436)
T PRK11889 302 -----------VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 370 (436)
T ss_pred -----------cCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHH
Confidence 1233344444444543 3589999999755433222222222222 222 23558888777887888
Q ss_pred HhhhhhhCCC
Q 000237 1619 WSLFDFLMPG 1628 (1806)
Q Consensus 1619 wSLL~FL~Pg 1628 (1806)
...|+.+.+.
T Consensus 371 ~~~F~~~~id 380 (436)
T PRK11889 371 ITNFKDIHID 380 (436)
T ss_pred HHHhcCCCCC
Confidence 7777765443
No 239
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.98 E-value=23 Score=47.41 Aligned_cols=41 Identities=20% Similarity=0.032 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhcCC--ce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1450 QQEGINWLAFLKRFKL--HG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~~--gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|.+.+..|......+. ++ ++.-+.|.|||..+.+++..+..
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4555555544444432 33 78889999999999998877654
No 240
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=71.75 E-value=20 Score=41.01 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=71.5
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEEEEecCh--hHHHHHH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSA--QDRIALR 1545 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~--~~R~~l~ 1545 (1806)
++.=..|.|||.++.-+.+.+... . .++.+||--+-.--=.++++.|+. .+.+-.+.-.. ...
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~--------~~v~lis~D~~R~ga~eQL~~~a~--~l~vp~~~~~~~~~~~---- 69 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-G--------KKVALISADTYRIGAVEQLKTYAE--ILGVPFYVARTESDPA---- 69 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T----------EEEEEESTSSTHHHHHHHHHHH--HHTEEEEESSTTSCHH----
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-c--------ccceeecCCCCCccHHHHHHHHHH--HhccccchhhcchhhH----
Confidence 456689999999888777765543 1 466777765444344455666662 22222222111 011
Q ss_pred hhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHH----h-hhcceEEeccCCCCCChhhHHh
Q 000237 1546 EQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQ----L-KAAHRLILSGTPIQNNITDLWS 1620 (1806)
Q Consensus 1546 ~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~----L-~A~~RLlLTGTPIqNnl~ELwS 1620 (1806)
+.++.-.+.+..-.+++|++|-+-+-.+.... ...++. + ....-+++++|--+..+.+...
T Consensus 70 -------------~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~-~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~ 135 (196)
T PF00448_consen 70 -------------EIAREALEKFRKKGYDLVLIDTAGRSPRDEEL-LEELKKLLEALNPDEVHLVLSATMGQEDLEQALA 135 (196)
T ss_dssp -------------HHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHH-HHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH
T ss_pred -------------HHHHHHHHHHhhcCCCEEEEecCCcchhhHHH-HHHHHHHhhhcCCccceEEEecccChHHHHHHHH
Confidence 12223334455566899999998765333222 222222 2 3345677899887777666666
Q ss_pred hhhhhCCC
Q 000237 1621 LFDFLMPG 1628 (1806)
Q Consensus 1621 LL~FL~Pg 1628 (1806)
.+..+.+.
T Consensus 136 ~~~~~~~~ 143 (196)
T PF00448_consen 136 FYEAFGID 143 (196)
T ss_dssp HHHHSSTC
T ss_pred HhhcccCc
Confidence 55555443
No 241
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=71.18 E-value=27 Score=45.69 Aligned_cols=226 Identities=21% Similarity=0.232 Sum_probs=160.2
Q ss_pred HHhhcccCCcCCCccccchhhhHHHHHHHHhhcCChhhHHHHHHHHHhhccCCceeeecccccchhhhhhhhhhhHHhHH
Q 000237 511 ILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLL 590 (1806)
Q Consensus 511 VlaLDRFGDyVSDqVVAPVRET~AQ~Lgall~~m~~~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKYlvAVR~dll~~lL 590 (1806)
.-.|+-|||++- =||+-+.-+.=+++.++++-.|...+--|+.=....-|.-.-+++=+|.=++-.+.+.|...+
T Consensus 219 p~il~~~~d~~~-----~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 219 PSILTNFGDKIN-----KVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred HHHHHHhhccch-----hhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence 446788999863 489999999999999999999988876663322223899999999888888888999999999
Q ss_pred hhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchhhHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhcCchhhH
Q 000237 591 GYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIP 670 (1806)
Q Consensus 591 ~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~~l~~il~~LWd~L~~lDDLs~St~svM~LLa~l~s~~~v~~ 670 (1806)
+.++|-+..-|-|..--||..+-.||.=+.+-+ ....|..++.+|=||+.|= +..| |+.+.
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svi---dN~dI~~~ip~Lld~l~dp---~~~~-------------~e~~~ 354 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI---DNPDIQKIIPTLLDALADP---SCYT-------------PECLD 354 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhcCc---ccch-------------HHHHH
Confidence 999999999999999999999999998775533 3334889999999888651 1111 11111
Q ss_pred HhhccccccccccchhcccccCCCCCCCCCCchhhhcccccccccccccchhhHHHHHHHHHHHHHhccccccccCCCCC
Q 000237 671 KMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGS 750 (1806)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~~~~~~~~~~~~~~ 750 (1806)
.+.... | |. ...+.+ |+.+||=|=-=|+-.-|+.++.+..-.--+...-.+ .
T Consensus 355 ~L~~tt----F-------V~------~V~~ps--LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD---------p 406 (569)
T KOG1242|consen 355 SLGATT----F-------VA------EVDAPS--LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED---------P 406 (569)
T ss_pred hhccee----e-------ee------eecchh--HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC---------H
Confidence 111100 0 00 011233 888888777677666677776666655554433211 2
Q ss_pred CCchhchhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc
Q 000237 751 FWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQ 789 (1806)
Q Consensus 751 ~W~~~i~~~~LR~vFQnlLlE~~~~I~~~s~~vW~~ll~ 789 (1806)
-|+.++++.++-=+ ++.+.-.-++++..+.++...+++
T Consensus 407 ~~lapfl~~Llp~l-k~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 407 KDLAPFLPSLLPGL-KENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred HHHhhhHHHHhhHH-HHHhcCCChhHHHHHHHHHHHHHH
Confidence 47777777776443 444555589999999999998886
No 242
>PRK08181 transposase; Validated
Probab=70.97 E-value=63 Score=38.93 Aligned_cols=46 Identities=22% Similarity=0.011 Sum_probs=31.4
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~ 1490 (1806)
.+-+.|..++.+.......+.+-+|.-..|.|||.-+.++......
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 3556777777554212234556789999999999999888765443
No 243
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=70.66 E-value=13 Score=51.09 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=20.8
Q ss_pred ce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1466 HG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1466 gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|. |+.-..|.|||..+..|...+..
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 55 78889999999999988877654
No 244
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=70.49 E-value=17 Score=49.71 Aligned_cols=118 Identities=18% Similarity=0.088 Sum_probs=68.9
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccH---HHHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLV---GHWAFEI 1520 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl---~qW~~Ei 1520 (1806)
..++-|.-|.--| +.|-|-=-.+|=|||+++..-+. +....+ +.+=||.. ..|. ..|...+
T Consensus 78 r~ydVQliGglvL------h~G~IAEMkTGEGKTLvAtLpay-LnAL~G--------kgVhVVTvNdYLA~RDae~mg~v 142 (925)
T PRK12903 78 RPYDVQIIGGIIL------DLGSVAEMKTGEGKTITSIAPVY-LNALTG--------KGVIVSTVNEYLAERDAEEMGKV 142 (925)
T ss_pred CcCchHHHHHHHH------hcCCeeeecCCCCccHHHHHHHH-HHHhcC--------CceEEEecchhhhhhhHHHHHHH
Confidence 4556677776333 23446667889999997643222 111111 34555555 4455 5799999
Q ss_pred HHhhccCCceEEEEecC--hhHHHHHHhhhcCCcEEEeeHHH-----HHhh----HhhhccccceEEEEcccccc
Q 000237 1521 EKFIDVSLMSTLQYVGS--AQDRIALREQFDKHNVIITSYDV-----VRKD----ADYLGQLLWNYCILDEGHII 1584 (1806)
Q Consensus 1521 ~kf~~~p~l~vliy~Gs--~~~R~~l~~~l~~~dVVITSYe~-----Lr~d----i~~L~~i~w~~VILDEaH~I 1584 (1806)
.+|+| +++.+.... +.+|. ..-.+||+-+|... +|.. .+..-+..++|+|+||+..|
T Consensus 143 y~fLG---LsvG~i~~~~~~~~rr----~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 143 FNFLG---LSVGINKANMDPNLKR----EAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred HHHhC---CceeeeCCCCChHHHH----HhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 99984 555544432 22222 22357888777544 4432 23344566899999999876
No 245
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=70.44 E-value=7.2 Score=43.19 Aligned_cols=112 Identities=23% Similarity=0.358 Sum_probs=77.2
Q ss_pred hHHHHhhhHHHHHhhcCC-hhHHHHHHHHHHHHhhhhccHHH-------------------------------------H
Q 000237 1282 KPKLLTLLPCIFKCVCHS-HVSVRLAASRCITSMAKSMTINV-------------------------------------M 1323 (1806)
Q Consensus 1282 ~~~~~~llp~~~~~l~~~-~~~vR~~aa~c~a~~~~~~~~~~-------------------------------------~ 1323 (1806)
||.+++.| +..|+.+ ..-+|..+-||++.|+..+|..- .
T Consensus 8 yP~LL~~L---~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~ 84 (160)
T PF11865_consen 8 YPELLDIL---LNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYP 84 (160)
T ss_pred hHHHHHHH---HHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHH
Confidence 45555544 4444444 37899999999999987554321 1
Q ss_pred HHHHHHhhcccCCccchhhccchhHHHHHHHhhcCCcccCCcchhhhhhhhccccCCchhhhhhhhhhhhccc
Q 000237 1324 AAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVP 1396 (1806)
Q Consensus 1324 ~~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~py~~~l~~pll~~msd~~~~vr~~~~~~fa~lv~ 1396 (1806)
..++..++-.|.|..-...+...+.+|-.+.+.+|...+||..-.+.+++..+..++...|...-..++.++.
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1233334445555544456678889999999999999999999988888999988877777665555555544
No 246
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.00 E-value=20 Score=49.41 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=20.2
Q ss_pred ce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1466 HG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1466 gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|. |+.=+.|.|||..+-++...+..
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccC
Confidence 45 78899999999998888766543
No 247
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=69.42 E-value=17 Score=47.06 Aligned_cols=67 Identities=25% Similarity=0.181 Sum_probs=46.0
Q ss_pred cchHHHHHHHHHHHHhh--------cCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHH
Q 000237 1446 LRRYQQEGINWLAFLKR--------FKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWA 1517 (1806)
Q Consensus 1446 LRpYQ~eGV~wL~~l~~--------~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~ 1517 (1806)
.+.+..+.+.|...... ...|.+|+-.+|.|||+.+-++..... .+++-|-.+.++..|.
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~------------~~fi~v~~~~l~sk~v 317 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR------------SRFISVKGSELLSKWV 317 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC------------CeEEEeeCHHHhcccc
Confidence 44555566666544332 233568999999999998888765211 4566666569999999
Q ss_pred HHHHHhh
Q 000237 1518 FEIEKFI 1524 (1806)
Q Consensus 1518 ~Ei~kf~ 1524 (1806)
-|..+..
T Consensus 318 Gesek~i 324 (494)
T COG0464 318 GESEKNI 324 (494)
T ss_pred chHHHHH
Confidence 9988875
No 248
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=68.70 E-value=13 Score=44.94 Aligned_cols=128 Identities=15% Similarity=0.156 Sum_probs=84.3
Q ss_pred HHHHHHHhhccCChhhhH--HHHhhhHHH-HHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCccchhh
Q 000237 1266 NIQLVRSIAPMLDEALKP--KLLTLLPCI-FKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHA 1342 (1806)
Q Consensus 1266 ~l~vl~~~~p~~~~~l~~--~~~~llp~~-~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 1342 (1806)
+|.+...++-.++..+.+ .+.+++..+ ..+++|+...||..+=+|++-+|-....-+-..+.- ++-.+.. +....
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l-~~~~~~~-~~~~v 80 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPL-FLQALQK-DDEEV 80 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHh-CCHHH
Confidence 566666666666655554 333777554 599999999999999999999997655444333321 1112222 24555
Q ss_pred ccchhHHHHHHHhhcCCcccCCcch---------hhhhhhhccccCCchhhhhhhhhhhhcc
Q 000237 1343 RQGAGMLISLLVQGLGAELVPYAPL---------LVVPLLRCMSDCDQSVRQSVTRSFASLV 1395 (1806)
Q Consensus 1343 r~ga~~~~~~~~~~~~~~~~py~~~---------l~~pll~~msd~~~~vr~~~~~~fa~lv 1395 (1806)
|--+..+|..++-..|..+++...- +..-+.+.+.+.++.++..+...|++|.
T Consensus 81 ~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 81 KITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 6677888888877778776654442 2222345666667788888888888864
No 249
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.39 E-value=59 Score=46.69 Aligned_cols=154 Identities=24% Similarity=0.332 Sum_probs=91.4
Q ss_pred hcccHHHHHHHHHHHhccchhhhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHHHHHHHHHhhccCChhhhHH
Q 000237 1205 SRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPK 1284 (1806)
Q Consensus 1205 ~RrGA~~al~~l~~~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid~l~vl~~~~p~~~~~l~~~ 1284 (1806)
-||=+.-++..|++.+|..|---.|+|--++.+...+ ..++.-..-.-. .-+.=..+|..+|+-+..=. .
T Consensus 1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~----lE~~vLnYls~r-~~~~e~ealDt~R~s~akss-----p 1216 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE----LEPQVLNYLSLR-LINIETEALDTLRASAAKSS-----P 1216 (1702)
T ss_pred HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc----cchHHHHHHHHh-hhhhHHHHHHHHHHhhhcCC-----c
Confidence 4666777899999999999887788877666654421 101100000000 01111223333333222100 0
Q ss_pred HHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCccchhhccchhHHHHHHHhhcCCcccCC
Q 000237 1285 LLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPY 1364 (1806)
Q Consensus 1285 ~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~py 1364 (1806)
++..|- +|+- .....+|.-++..+.-++..+...--|-|..-+|..++..+|.++.||
T Consensus 1217 ---mmeTi~---------------~ci~----~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~ 1274 (1702)
T KOG0915|consen 1217 ---MMETIN---------------KCIN----YIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY 1274 (1702)
T ss_pred ---HHHHHH---------------HHHH----hhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc
Confidence 111111 2221 233445555555555556655556678999999999999999999999
Q ss_pred cchhhhhhhhccccCCchhhhhhhhh
Q 000237 1365 APLLVVPLLRCMSDCDQSVRQSVTRS 1390 (1806)
Q Consensus 1365 ~~~l~~pll~~msd~~~~vr~~~~~~ 1390 (1806)
..-++.-++--..|.++.+|.+-..+
T Consensus 1275 sgKll~al~~g~~dRNesv~kafAsA 1300 (1702)
T KOG0915|consen 1275 SGKLLRALFPGAKDRNESVRKAFASA 1300 (1702)
T ss_pred hhHHHHHHhhccccccHHHHHHHHHH
Confidence 99988888888889888888665433
No 250
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.37 E-value=47 Score=41.97 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1450 QQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|...+..|......+ .|+ |+.-..|.|||..+.++...+..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344444443333333 344 67889999999999888776543
No 251
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=68.27 E-value=19 Score=49.56 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=73.2
Q ss_pred hhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEe--ccccH-HHHHHHHHHhhccCCceEEEEecC
Q 000237 1461 KRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIIC--PSTLV-GHWAFEIEKFIDVSLMSTLQYVGS 1537 (1806)
Q Consensus 1461 ~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVc--P~SLl-~qW~~Ei~kf~~~p~l~vliy~Gs 1537 (1806)
...+.-.|++-++|.|||.|.=-++...... ....|+| |.-+. -.=.+.+..-.+...=..+-|.--
T Consensus 62 i~~~~vvii~getGsGKTTqlP~~lle~g~~----------~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iR 131 (845)
T COG1643 62 IEQNQVVIIVGETGSGKTTQLPQFLLEEGLG----------IAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIR 131 (845)
T ss_pred HHhCCEEEEeCCCCCChHHHHHHHHHhhhcc----------cCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEE
Confidence 3455567999999999999987776543320 2223333 54433 222333333332110011111110
Q ss_pred hhHHHHHHhhhcCCcEEEeeHHHHHhhHh-hhccccceEEEEcccccccChhhHHHH-HHHHh----hhcc-eEEeccCC
Q 000237 1538 AQDRIALREQFDKHNVIITSYDVVRKDAD-YLGQLLWNYCILDEGHIIKNSKSKITV-AVKQL----KAAH-RLILSGTP 1610 (1806)
Q Consensus 1538 ~~~R~~l~~~l~~~dVVITSYe~Lr~di~-~L~~i~w~~VILDEaH~IKN~~Sk~sk-alk~L----~A~~-RLlLTGTP 1610 (1806)
..++. -.+-.|-++|=.++-+.+. .-.--.+++||+||+|. ++-++-+.- .++.+ +.+- .+++|+|-
T Consensus 132 fe~~~-----s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHE-RSl~tDilLgllk~~~~~rr~DLKiIimSATl 205 (845)
T COG1643 132 FESKV-----SPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHE-RSLNTDILLGLLKDLLARRRDDLKLIIMSATL 205 (845)
T ss_pred eeccC-----CCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhh-hhHHHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 00000 0233477778777766553 22234589999999996 222222221 12222 3223 46799997
Q ss_pred CCCChhhHHhh
Q 000237 1611 IQNNITDLWSL 1621 (1806)
Q Consensus 1611 IqNnl~ELwSL 1621 (1806)
=...+..++..
T Consensus 206 d~~rfs~~f~~ 216 (845)
T COG1643 206 DAERFSAYFGN 216 (845)
T ss_pred CHHHHHHHcCC
Confidence 66566655553
No 252
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=68.13 E-value=54 Score=40.14 Aligned_cols=137 Identities=19% Similarity=0.159 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHhhcCC----ce-EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEE-eccc-cHHHHHHHH
Q 000237 1448 RYQQEGINWLAFLKRFKL----HG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLII-CPST-LVGHWAFEI 1520 (1806)
Q Consensus 1448 pYQ~eGV~wL~~l~~~~~----gG-ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIV-cP~S-Ll~qW~~Ei 1520 (1806)
|.=.++++-|..+..+.. .| +|.-|.|.|||..+=-|.... . .........-|+++| +|+. -.......|
T Consensus 40 ~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h-p--~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 40 PRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH-P--PQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC-C--CCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 344566666666555543 23 788899999998554443311 1 111111112355444 4533 445666666
Q ss_pred HHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccc-cChhhHHH---HHHH
Q 000237 1521 EKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHII-KNSKSKIT---VAVK 1596 (1806)
Q Consensus 1521 ~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~I-KN~~Sk~s---kalk 1596 (1806)
-..++.|.-. .. + ....-......++.+.-.++|+||.|++ .....+.. .++|
T Consensus 117 L~~lgaP~~~------~~--~---------------~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK 173 (302)
T PF05621_consen 117 LEALGAPYRP------RD--R---------------VAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK 173 (302)
T ss_pred HHHhCcccCC------CC--C---------------HHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH
Confidence 6665444211 10 0 0011112236778888999999999996 33333333 3444
Q ss_pred Hhhhcc--eEEeccCC
Q 000237 1597 QLKAAH--RLILSGTP 1610 (1806)
Q Consensus 1597 ~L~A~~--RLlLTGTP 1610 (1806)
.|.... -+++.||+
T Consensus 174 ~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 174 FLGNELQIPIVGVGTR 189 (302)
T ss_pred HHhhccCCCeEEeccH
Confidence 443333 25566765
No 253
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=67.85 E-value=92 Score=39.20 Aligned_cols=219 Identities=21% Similarity=0.264 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHhhcccCCcCC-CccccchhhhHHHHHHHHhhcCCh-hhHHHHHHHHHhhccCCceeeecccccchhhhh
Q 000237 502 QDCAIRFLCILSLDRFGDYVS-DQVVAPVRETCAQALGAAFKYMHP-SLVYETLYILLQMQRRPEWEIRHGSLLGIKYLV 579 (1806)
Q Consensus 502 eDlaiRlLCVlaLDRFGDyVS-DqVVAPVRET~AQ~Lgall~~m~~-~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKYlv 579 (1806)
.+++.+.+.+++--+|+=++- ... -++.-.+|-.+-.+++. ..+.+-++++..+ +.
T Consensus 106 K~i~~~~l~~ls~Q~f~~~~~~~~~----~~~l~~~l~~i~~~~~s~si~~erL~i~~~l------------------l~ 163 (372)
T PF12231_consen 106 KSICTHYLWCLSDQKFSPKIMTSDR----VERLLAALHNIKNRFPSKSIISERLNIYKRL------------------LS 163 (372)
T ss_pred HHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHHhhccCCchhHHHHHHHHHHHH------------------HH
Confidence 468888999999999998742 111 12333333333333444 3466777776322 22
Q ss_pred hhhhhhHHhHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchh-hHHHHHHHHHHhhcCCCCCCcchHHHHHH
Q 000237 580 AVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQ-TLHSIVMLLWDILLDLDDLSPSTSSVMNL 658 (1806)
Q Consensus 580 AVR~dll~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~-~l~~il~~LWd~L~~lDDLs~St~svM~L 658 (1806)
-.++-|+. -.+.=+|.++.++-+.+.|+|.-|...+.=+...+. ++ .+...+ .+++..- +... .+-++
T Consensus 164 q~p~~M~~-~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~---~~~~~s~~~---~~~~~~~--~~~~--~~~~~ 232 (372)
T PF12231_consen 164 QFPQQMIK-HADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLG---PNKELSKSV---LEDLQRS--LENG--KLIQL 232 (372)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhC---hhHHHHHHH---HHHhccc--cccc--cHHHH
Confidence 22333432 344445566666677899999987776655544332 22 233332 3333211 1111 12222
Q ss_pred HHHHhcCchhhHHhhccccccccccchhcccccCCCCCCCCCCchhhhcccccccccccccchhhHHHHHHHHHHHHHhc
Q 000237 659 LAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAG 738 (1806)
Q Consensus 659 La~l~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~~ 738 (1806)
+.+ .+..|.. +.+ =..+||.+|+.+ ..|| +
T Consensus 233 ~~~------~L~~mi~-----------------------~~~----~~~~a~~iW~~~---------------i~LL--~ 262 (372)
T PF12231_consen 233 YCE------RLKEMIK-----------------------SKD----EYKLAMQIWSVV---------------ILLL--G 262 (372)
T ss_pred HHH------HHHHHHh-----------------------CcC----CcchHHHHHHHH---------------HHHh--C
Confidence 111 1112211 101 134688899832 2333 2
Q ss_pred cccccccCCCCCCCchhchhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcCChhhHHHhhhhhHHHHHHHhhcCCCCCC
Q 000237 739 YKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGSSL 818 (1806)
Q Consensus 739 ~~~~~~~~~~~~~W~~~i~~~~LR~vFQnlLlE~~~~I~~~s~~vW~~ll~~~~~~~~~~~~~~~~~wl~L~mtP~g~~~ 818 (1806)
+. .-..| ..+.+.|+ |.|.+.--+++.+...|..+|+.++.... ........++.|+++|+...+
T Consensus 263 ~~-------~~~~w--~~~n~wL~-v~e~cFn~~d~~~k~~A~~aW~~liy~~~-----~~~~~~~k~l~lL~~Pl~~~l 327 (372)
T PF12231_consen 263 SS-------RLDSW--EHLNEWLK-VPEKCFNSSDPQVKIQAFKAWRRLIYASN-----PNELTSPKRLKLLCQPLSSQL 327 (372)
T ss_pred Cc-------hhhcc--HhHhHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHhc-----CCccccHHHHHHHHHHHHHHh
Confidence 21 12345 35566674 55999999999999999999999997211 112234579999999875533
No 254
>PTZ00429 beta-adaptin; Provisional
Probab=67.37 E-value=66 Score=44.05 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=90.0
Q ss_pred HHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchhhHHHHHHHHHHhhcCCCCCCcc-hHHHHHHHHHHhcCchh--h
Q 000237 593 VLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPS-TSSVMNLLAEIYSQEEM--I 669 (1806)
Q Consensus 593 Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~~l~~il~~LWd~L~~lDDLs~S-t~svM~LLa~l~s~~~v--~ 669 (1806)
|+.=+..=..|.|.+++.-|--++=-+|.. .+.....+|..|-+.|.+-.++.+. +..+-++ +-.+|+- +
T Consensus 369 IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k----~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~I---lrkyP~~~il 441 (746)
T PTZ00429 369 ILKELAEYASGVDMVFVVEVVRAIASLAIK----VDSVAPDCANLLLQIVDRRPELLPQVVTAAKDI---VRKYPELLML 441 (746)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh----ChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHCccHHHH
Confidence 333333444466777776666665444432 2566777888888888654454322 2222233 2345542 1
Q ss_pred HHhhccccccccccchhc--ccccCCCCCCCCCC-chhhhcccccccccccccchhhHHHHHHHHHHHHHhccccccccC
Q 000237 670 PKMVGATSKQEFDLNEVV--RADDVGEGRDFQAN-PYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAES 746 (1806)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~l~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~~~~~~~~~~ 746 (1806)
..+........++-.+.. -|==+||+.+..++ ++.+..++.+ |+-++ ..||.+.|.+...|.-....
T Consensus 442 ~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~---f~~E~-~~VqlqlLta~vKlfl~~p~------ 511 (746)
T PTZ00429 442 DTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDT---IMEHE-QRVQLAILSAAVKMFLRDPQ------ 511 (746)
T ss_pred HHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhh---hccCC-HHHHHHHHHHHHHHHhcCcH------
Confidence 222110000000000000 01123444333222 4445555543 55555 57999999988887653211
Q ss_pred CCCCCCchhchhhHHHHHHHHHhcc-chHHHHHHHHHHHHHHhc
Q 000237 747 SGGSFWPSFILGDTLRIVFQNLLLE-SNEEILQCSDRVWRLLVQ 789 (1806)
Q Consensus 747 ~~~~~W~~~i~~~~LR~vFQnlLlE-~~~~I~~~s~~vW~~ll~ 789 (1806)
=.++.+..||+.+.-+ .|+||+|-+.--|+.|-.
T Consensus 512 ---------~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~ 546 (746)
T PTZ00429 512 ---------GMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSK 546 (746)
T ss_pred ---------HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcC
Confidence 1256777888887765 666999999999986643
No 255
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=66.87 E-value=31 Score=45.98 Aligned_cols=138 Identities=16% Similarity=0.194 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhhcCC--ce-EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhcc
Q 000237 1450 QQEGINWLAFLKRFKL--HG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDV 1526 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~~--gG-ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~ 1526 (1806)
|...++.|......+. ++ |+.-..|.|||..+.++...+........ .+|++-.| . |+..-..+...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~~~~~~~c--g----~c~~C~~i~~g 98 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGD----GGPTIDLC--G----VGEHCQAIMEG 98 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----CCCccccC--c----ccHHHHHHhcC
Confidence 4555555544443332 33 77789999999999888876654321110 02222212 1 22222233322
Q ss_pred CCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhcc----ccceEEEEcccccccCh-hhHHHHHHHHhhhc
Q 000237 1527 SLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQ----LLWNYCILDEGHIIKNS-KSKITVAVKQLKAA 1601 (1806)
Q Consensus 1527 p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~----i~w~~VILDEaH~IKN~-~Sk~skalk~L~A~ 1601 (1806)
.+..++.+.... .++.+.+|..++.+.. -.+.+||+||+|.+... ...+.+.+......
T Consensus 99 ~h~Dv~e~~a~s----------------~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~ 162 (598)
T PRK09111 99 RHVDVLEMDAAS----------------HTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH 162 (598)
T ss_pred CCCceEEecccc----------------cCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCC
Confidence 333333332211 1223445544433322 24789999999999431 11222223333455
Q ss_pred ceEEeccCCCCC
Q 000237 1602 HRLILSGTPIQN 1613 (1806)
Q Consensus 1602 ~RLlLTGTPIqN 1613 (1806)
.+++|+.|-+..
T Consensus 163 ~~fIl~tte~~k 174 (598)
T PRK09111 163 VKFIFATTEIRK 174 (598)
T ss_pred eEEEEEeCChhh
Confidence 567776665443
No 256
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=66.80 E-value=50 Score=44.64 Aligned_cols=40 Identities=25% Similarity=0.169 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhH
Q 000237 1450 QQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~ 1489 (1806)
|...++.|......+ .++ |+.-..|.|||..+.++...+.
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 444444443333333 245 8889999999998888876544
No 257
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=66.54 E-value=27 Score=45.34 Aligned_cols=126 Identities=23% Similarity=0.284 Sum_probs=91.6
Q ss_pred HHHHHHHHhccchhhhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHHHHHHHHHhhccCChhhhHHHHhhhHH
Q 000237 1212 ALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPC 1291 (1806)
Q Consensus 1212 al~~l~~~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid~l~vl~~~~p~~~~~l~~~~~~llp~ 1291 (1806)
||..|...=| |-.-||.+-.+|.+-....+. ...-+-|+.-|+++|+++-.=+--|-|-+-+++|.
T Consensus 227 AL~sL~TDsG--L~~LlPyFv~fIae~vs~ni~------------~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PS 292 (576)
T KOG2549|consen 227 ALQSLETDSG--LQQLLPYFVTFIAEGVSVNIV------------QNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPS 292 (576)
T ss_pred HHHhhccCcc--HHHHHHHHHHHHhhheeeccc------------cccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhH
Confidence 6666666444 556789999999887643211 12346799999999999987666777999999999
Q ss_pred HHHhhcCCh----------hHHHHHHHHHHHHhhhhccHH---HHHHHHHHhhcccCCc-cchhhccchhHHHH
Q 000237 1292 IFKCVCHSH----------VSVRLAASRCITSMAKSMTIN---VMAAVVENAIPMLGDM-TSVHARQGAGMLIS 1351 (1806)
Q Consensus 1292 ~~~~l~~~~----------~~vR~~aa~c~a~~~~~~~~~---~~~~~~~~~~p~l~~~-~~~~~r~ga~~~~~ 1351 (1806)
+++|+-+++ -++|--||+.++-+|+.+... .=.++++...-.|.|. .......|++-.+.
T Consensus 293 vlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~ 366 (576)
T KOG2549|consen 293 VLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLS 366 (576)
T ss_pred HHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHH
Confidence 999987654 468999999999999976554 3345555555555554 56678899995544
No 258
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=66.48 E-value=25 Score=43.86 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhcCC--c-eEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1450 QQEGINWLAFLKRFKL--H-GILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~~--g-GILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|.+++..|......+. | -++.-+.|+|||..+..++..+..
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4455666655554443 2 377899999999999888876554
No 259
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=66.32 E-value=14 Score=47.76 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=112.7
Q ss_pred ccHHHHHHHHHHHhccchhhhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHH-HHHHHHHHhhccCChhhhHHH
Q 000237 1207 RGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILI-NNIQLVRSIAPMLDEALKPKL 1285 (1806)
Q Consensus 1207 rGA~~al~~l~~~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~li-d~l~vl~~~~p~~~~~l~~~~ 1285 (1806)
-.+=.||.+|...--+...+.+-.+.+.++..|.+.++-+-+.... +|...-|++. +-+.||+++.-+..+++.+--
T Consensus 518 ~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~--eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~ 595 (858)
T COG5215 518 VSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILAT--EDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE 595 (858)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH
Confidence 3445577777777777777777777777777664322211110010 1112234433 345799999999888777554
Q ss_pred HhhhHHHHHhhcCChhH-HHHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCccchhh---ccchhHHHHHHHhhcCCcc
Q 000237 1286 LTLLPCIFKCVCHSHVS-VRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHA---RQGAGMLISLLVQGLGAEL 1361 (1806)
Q Consensus 1286 ~~llp~~~~~l~~~~~~-vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~---r~ga~~~~~~~~~~~~~~~ 1361 (1806)
..++-.++..|++.... +---+=-.|..++.. -.+.+...+.+++|++....+-.. ..-++.++..+...||.++
T Consensus 596 D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~s-l~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df 674 (858)
T COG5215 596 DQLMELFIRILESTKPTTAFGDVYTAISALSTS-LEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF 674 (858)
T ss_pred HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH
Confidence 44555566666666322 222221223333332 256788888999999986654433 4468889999999999999
Q ss_pred cCCcchhhhhhhhccccCC--chhhhhhhhhhhh
Q 000237 1362 VPYAPLLVVPLLRCMSDCD--QSVRQSVTRSFAS 1393 (1806)
Q Consensus 1362 ~py~~~l~~pll~~msd~~--~~vr~~~~~~fa~ 1393 (1806)
.||...+..-+.+++|... .++......+|..
T Consensus 675 ~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgD 708 (858)
T COG5215 675 NIYADVLMSSLVQCLSSEATHRDLKPAILSVFGD 708 (858)
T ss_pred HHHHHHHHHHHHHHhcChhhccccchHHHHHHHH
Confidence 9999998888888888753 2333333444543
No 260
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=66.10 E-value=15 Score=50.60 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=69.9
Q ss_pred hHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCccchhhccchhHHHHHHHhhcCCcccCCcc-h
Q 000237 1289 LPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAP-L 1367 (1806)
Q Consensus 1289 lp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~py~~-~ 1367 (1806)
+-.++..|++..++||.+|||-++.+.+..|-+-...++..++..++-...-..=-|+.-++..+.. .+++++.. .
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~---rGlLlps~l~ 419 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL---RGLLLPSLLE 419 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh---cCCcchHHHH
Confidence 4566889999999999999999999999999998899999998877754433333378777766543 45555544 3
Q ss_pred hhhhhh----------hccccCCchhhhhh
Q 000237 1368 LVVPLL----------RCMSDCDQSVRQSV 1387 (1806)
Q Consensus 1368 l~~pll----------~~msd~~~~vr~~~ 1387 (1806)
.|+|++ |.++.+. .||.++
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~-~VRDaA 448 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQ-HVRDAA 448 (1133)
T ss_pred HHHHHHHHHhhhhhhhccccccc-chHHHH
Confidence 577764 4566654 578776
No 261
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=66.02 E-value=14 Score=46.24 Aligned_cols=46 Identities=30% Similarity=0.424 Sum_probs=33.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEe-ccccHHHHHHHHHHhh
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIIC-PSTLVGHWAFEIEKFI 1524 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVc-P~SLl~qW~~Ei~kf~ 1524 (1806)
|.++.-.+|.|||+.+=|+... |+.+..-+ ..+|+..|.-|=+|..
T Consensus 247 gvLm~GPPGTGKTlLAKAvATE-------------c~tTFFNVSsstltSKwRGeSEKlv 293 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATE-------------CGTTFFNVSSSTLTSKWRGESEKLV 293 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHh-------------hcCeEEEechhhhhhhhccchHHHH
Confidence 4588899999999988777642 34455544 4668899998877764
No 262
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=66.01 E-value=21 Score=35.77 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=56.3
Q ss_pred hhHHHHHHhcCCcHHHHHHHHHHHHHHHhhChHhHH-----HHHHhhhhcccCCChhHHHHHHHHHHHHHhcCC
Q 000237 8 LNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLN-----SLLRKVSQYLRSKSWDTRVAAAHAIGAIAQNVK 76 (1806)
Q Consensus 8 LdRL~~LLeTGSt~~~R~tAA~Qlgdiak~hP~el~-----~LL~rv~~~LrSk~WdTRvAAa~Aig~I~~nv~ 76 (1806)
+..|+.+|..++ ..+|..|+.-|+.+.+.-|+... ..+..+.++|.+++.+.|.+|..|++.|+.+-|
T Consensus 9 i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 9 LPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 567888998886 78999999999999987555444 455578888999999999999999999998743
No 263
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=65.64 E-value=32 Score=43.24 Aligned_cols=86 Identities=12% Similarity=0.103 Sum_probs=49.5
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEEEEecChhHHHHHHhh
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQ 1547 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~ 1547 (1806)
++.=++|.|||..++.++...... .+++|.|.-.--..+......++. ...-+
T Consensus 86 LI~G~pG~GKStLllq~a~~~a~~---------g~~VlYvs~EEs~~qi~~Ra~rlg-~~~~~----------------- 138 (372)
T cd01121 86 LIGGDPGIGKSTLLLQVAARLAKR---------GGKVLYVSGEESPEQIKLRADRLG-ISTEN----------------- 138 (372)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhc---------CCeEEEEECCcCHHHHHHHHHHcC-CCccc-----------------
Confidence 788899999999888887654321 146777765444455544444432 11111
Q ss_pred hcCCcEEEeeHHHHHhhHhhhccccceEEEEccccccc
Q 000237 1548 FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIK 1585 (1806)
Q Consensus 1548 l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IK 1585 (1806)
+.+.....+....+.+.....++||+|+.|.+.
T Consensus 139 -----l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 139 -----LYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred -----EEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 112111112222233445678999999999874
No 264
>PRK06526 transposase; Provisional
Probab=65.30 E-value=39 Score=40.26 Aligned_cols=27 Identities=22% Similarity=0.076 Sum_probs=21.5
Q ss_pred cCCceEEEcCCCCchHHHHHHHHHHhH
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia~l~ 1489 (1806)
.+.+-+|.-..|.|||..+.++.....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 345668888999999999999876544
No 265
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.03 E-value=28 Score=47.12 Aligned_cols=142 Identities=14% Similarity=0.186 Sum_probs=100.3
Q ss_pred ccHHHHHHHHHHHhccchhhhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHHHHHHHHHhhccCChhhhHHHH
Q 000237 1207 RGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLL 1286 (1806)
Q Consensus 1207 rGA~~al~~l~~~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid~l~vl~~~~p~~~~~l~~~~~ 1286 (1806)
..|--++..||..|-+++|..+--.++.+..... .+.-...|+.++.-++-+--++ ....-
T Consensus 786 LnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~------------~d~~lkVGEai~k~~qa~Gel~-------~~y~~ 846 (982)
T KOG4653|consen 786 LNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQ------------TDYRLKVGEAILKVAQALGELV-------FKYKA 846 (982)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCC------------ccceehHHHHHHHHHHHhccHH-------HHHHH
Confidence 3455577899999999886544333332222110 1223456777776555332211 11222
Q ss_pred hhhHHHHHhhcCChhHHHHHHHHHHHHhhhhcc---HHHHHHHHHHhhcccCCccchhhccchhHHHHHHHhhcCCcccC
Q 000237 1287 TLLPCIFKCVCHSHVSVRLAASRCITSMAKSMT---INVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVP 1363 (1806)
Q Consensus 1287 ~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~---~~~~~~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~p 1363 (1806)
.+.-.++..++.+...+|-++---++.+|.... .+.|.-++..++-.....+++..|+.|+-+|.++.+++|.+.+|
T Consensus 847 ~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLp 926 (982)
T KOG4653|consen 847 VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLP 926 (982)
T ss_pred HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHH
Confidence 345667889999999999999888999998766 67888888889888888889999999999999999999999999
Q ss_pred Ccch
Q 000237 1364 YAPL 1367 (1806)
Q Consensus 1364 y~~~ 1367 (1806)
+-..
T Consensus 927 ilr~ 930 (982)
T KOG4653|consen 927 ILRL 930 (982)
T ss_pred HHHH
Confidence 5543
No 266
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.35 E-value=59 Score=42.62 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1450 QQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|...++.|......+ .|. ++.-..|.|||..+-.+...+..
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444455444433322 244 78889999999988888766543
No 267
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=64.33 E-value=44 Score=46.29 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=83.1
Q ss_pred chHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEe--ccc----cHHHHHH-H
Q 000237 1447 RRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIIC--PST----LVGHWAF-E 1519 (1806)
Q Consensus 1447 RpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVc--P~S----Ll~qW~~-E 1519 (1806)
+.++.+-++.+ +.+.--++.-|+|-|||.|+--++.......+ +. .+ ||| |.- -+.+|.. |
T Consensus 175 ~~~r~~Il~~i----~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~-~~--IicTQPRRIsAIsvAeRVa~E 242 (924)
T KOG0920|consen 175 YKMRDTILDAI----EENQVVVISGETGCGKTTQVPQFILDEAIESG-----AA-CN--IICTQPRRISAISVAERVAKE 242 (924)
T ss_pred HHHHHHHHHHH----HhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CC-Ce--EEecCCchHHHHHHHHHHHHH
Confidence 34555545433 34556789999999999999999876554332 11 22 555 431 2233333 3
Q ss_pred HHHhhccCCceEEEEe-cChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhh-ccccceEEEEcccccccChhhHHHHHHHH
Q 000237 1520 IEKFIDVSLMSTLQYV-GSAQDRIALREQFDKHNVIITSYDVVRKDADYL-GQLLWNYCILDEGHIIKNSKSKITVAVKQ 1597 (1806)
Q Consensus 1520 i~kf~~~p~l~vliy~-Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L-~~i~w~~VILDEaH~IKN~~Sk~skalk~ 1597 (1806)
-..- .. ..+-|. +-.+.+ .....+..+|+..+-+..... .-.....+|+||.|.=--..-.+--.++.
T Consensus 243 R~~~---~g-~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~ 312 (924)
T KOG0920|consen 243 RGES---LG-EEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKD 312 (924)
T ss_pred hccc---cC-CeeeEEEeeeccc------CCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHH
Confidence 3111 22 333232 111111 123568899999886654321 12236789999999632222333344444
Q ss_pred h---h-hcceEEeccCCCCCChhhHHhhh
Q 000237 1598 L---K-AAHRLILSGTPIQNNITDLWSLF 1622 (1806)
Q Consensus 1598 L---~-A~~RLlLTGTPIqNnl~ELwSLL 1622 (1806)
+ + .-+.++||||---..+.++|.-.
T Consensus 313 lL~~~p~LkvILMSAT~dae~fs~YF~~~ 341 (924)
T KOG0920|consen 313 LLPRNPDLKVILMSATLDAELFSDYFGGC 341 (924)
T ss_pred HhhhCCCceEEEeeeecchHHHHHHhCCC
Confidence 4 2 23457899998755555555533
No 268
>PRK14974 cell division protein FtsY; Provisional
Probab=64.18 E-value=69 Score=39.86 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=58.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecc----ccHHHHHHHHHHhhccCCceEE-EEecChhHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS----TLVGHWAFEIEKFIDVSLMSTL-QYVGSAQDR 1541 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~----SLl~qW~~Ei~kf~~~p~l~vl-iy~Gs~~~R 1541 (1806)
.++.-..|.|||.++..++..+... . .+++++... ....||....... .+.+. .+.|....
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~-g--------~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~dp~- 208 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKN-G--------FSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGADPA- 208 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc-C--------CeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCCCHH-
Confidence 3566799999998776666543321 1 356666543 3446665544443 12221 11121100
Q ss_pred HHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHh----hhcc-eEEeccCCCCC
Q 000237 1542 IALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL----KAAH-RLILSGTPIQN 1613 (1806)
Q Consensus 1542 ~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L----~A~~-RLlLTGTPIqN 1613 (1806)
..+..-++......+++||+|.+++..+..... ..++.+ +... .+.+++|.-++
T Consensus 209 -----------------~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm-~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 209 -----------------AVAYDAIEHAKARGIDVVLIDTAGRMHTDANLM-DELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred -----------------HHHHHHHHHHHhCCCCEEEEECCCccCCcHHHH-HHHHHHHHhhCCceEEEeeccccchh
Confidence 111111222333457899999999986544433 333333 2333 45677776443
No 269
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=64.10 E-value=74 Score=37.00 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=24.4
Q ss_pred cceEEEEcccccccChhhHH---HHHHHHh-hhcceEEecc
Q 000237 1572 LWNYCILDEGHIIKNSKSKI---TVAVKQL-KAAHRLILSG 1608 (1806)
Q Consensus 1572 ~w~~VILDEaH~IKN~~Sk~---skalk~L-~A~~RLlLTG 1608 (1806)
..+++++|..|.+.+..... +..+..+ ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 47899999999998764322 2233333 3456778777
No 270
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.86 E-value=26 Score=46.80 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=20.0
Q ss_pred ce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1466 HG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1466 gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
+. |+.-..|.|||..+..+...+..
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhccc
Confidence 44 56889999999999888876543
No 271
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=63.64 E-value=71 Score=39.38 Aligned_cols=43 Identities=21% Similarity=0.108 Sum_probs=28.4
Q ss_pred chHHHHHHH-HHHHHhhc--CCceEEEcCCCCchHHHHHHHHHHhH
Q 000237 1447 RRYQQEGIN-WLAFLKRF--KLHGILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1447 RpYQ~eGV~-wL~~l~~~--~~gGILADdMGLGKTlqaIalia~l~ 1489 (1806)
|..|.+.+. ++...... ..+.++.=..|.|||..+-.++..+.
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 777777763 33322222 23458888999999998888776543
No 272
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.45 E-value=25 Score=46.67 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhcCC--ce-EEEcCCCCchHHHHHHHHHHhH
Q 000237 1449 YQQEGINWLAFLKRFKL--HG-ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~~~~~--gG-ILADdMGLGKTlqaIalia~l~ 1489 (1806)
.|...+..|......+. |. |+.=+.|.|||..+.+++..+.
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35666666654444332 33 7889999999999988876654
No 273
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=63.41 E-value=40 Score=46.18 Aligned_cols=127 Identities=16% Similarity=0.091 Sum_probs=71.1
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHH-HHHHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVG-HWAFEIEK 1522 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~-qW~~Ei~k 1522 (1806)
..|-+-|++++..+.. .+.-.+|--..|.|||...-+++......+ .+++.++|..... ...+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~~g---------~~V~~~ApTg~Aa~~L~~~--- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEAAG---------YRVIGAALSGKAAEGLQAE--- 415 (744)
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHhCC---------CeEEEEeCcHHHHHHHHhc---
Confidence 4688999999987642 123458889999999987766654432211 4677778876443 23221
Q ss_pred hhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHh-hhc
Q 000237 1523 FIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-KAA 1601 (1806)
Q Consensus 1523 f~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L-~A~ 1601 (1806)
++.+..++ .+ +... +.+... .....+++|+||+..+.. ....+.+... ...
T Consensus 416 -~g~~a~Ti--------~~--~~~~-------------~~~~~~--~~~~~~llIvDEasMv~~--~~~~~Ll~~~~~~~ 467 (744)
T TIGR02768 416 -SGIESRTL--------AS--LEYA-------------WANGRD--LLSDKDVLVIDEAGMVGS--RQMARVLKEAEEAG 467 (744)
T ss_pred -cCCceeeH--------HH--HHhh-------------hccCcc--cCCCCcEEEEECcccCCH--HHHHHHHHHHHhcC
Confidence 11110000 00 0000 001001 123578999999999843 3334444422 467
Q ss_pred ceEEeccCCCCC
Q 000237 1602 HRLILSGTPIQN 1613 (1806)
Q Consensus 1602 ~RLlLTGTPIqN 1613 (1806)
.+++|.|=|-|-
T Consensus 468 ~kliLVGD~~QL 479 (744)
T TIGR02768 468 AKVVLVGDPEQL 479 (744)
T ss_pred CEEEEECChHHc
Confidence 899999966543
No 274
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=63.33 E-value=35 Score=42.22 Aligned_cols=46 Identities=28% Similarity=0.296 Sum_probs=34.1
Q ss_pred ccchHHHHHHHHHHHHhhcCCce-EEEcCCCCchHHHHHHHHHHhHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHG-ILCDDMGLGKTLQASAIVASDIAE 1491 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gG-ILADdMGLGKTlqaIalia~l~~~ 1491 (1806)
.++|+|....+-+....+ -.|+ ++.-..|.|||..+.++...+...
T Consensus 3 ~~yPWl~~~~~~~~~~~r-~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGR-HPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHCCC-cceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 358899888876655422 2345 577899999999999998877653
No 275
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=63.18 E-value=55 Score=34.46 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=17.0
Q ss_pred EEEcCCCCchHHHHHHHHHHhH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~ 1489 (1806)
++.=..|.|||..+..++....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHH
Confidence 4556799999999888876543
No 276
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.10 E-value=41 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=19.4
Q ss_pred ce-EEEcCCCCchHHHHHHHHHHhH
Q 000237 1466 HG-ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1466 gG-ILADdMGLGKTlqaIalia~l~ 1489 (1806)
|+ ++.-..|.|||..+.++...+.
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45 8899999999998888776543
No 277
>PRK08116 hypothetical protein; Validated
Probab=62.93 E-value=71 Score=38.35 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=20.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~~ 1490 (1806)
+-+|.=+.|.|||..+.+++..+..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~ 140 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIE 140 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3578889999999999988776554
No 278
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.87 E-value=55 Score=42.85 Aligned_cols=41 Identities=24% Similarity=0.185 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhcCC--ce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1450 QQEGINWLAFLKRFKL--HG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~~--gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|...+..|......+. |. ++.-..|.|||..+.++...+..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4455555544333332 44 88899999999999888776543
No 279
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.62 E-value=38 Score=45.40 Aligned_cols=42 Identities=24% Similarity=0.193 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1449 YQQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
.|...+..|......+ .|+ |+.-..|.|||..+..+...+..
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3556666665544333 244 68899999999999888776544
No 280
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=62.36 E-value=20 Score=43.70 Aligned_cols=42 Identities=21% Similarity=0.025 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhc--CCceEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1449 YQQEGINWLAFLKRF--KLHGILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~~~--~~gGILADdMGLGKTlqaIalia~l~~ 1490 (1806)
+|...|+-|...... ..+=++--..|.|||-++.++...+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 788888877544333 122366679999999999999876543
No 281
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=61.99 E-value=61 Score=35.67 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=34.0
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHh
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKF 1523 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf 1523 (1806)
++.-++|.|||..++.++......+ .+++++.......+..+.+..+
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~g---------~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARG---------EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCC---------CcEEEEECCCCHHHHHHHHHHc
Confidence 5677999999999998887644321 5788888766666666655554
No 282
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.61 E-value=64 Score=43.31 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1450 QQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|...+..|......+ .|. ++.-..|.|||..+.++...+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455555554444333 245 78889999999999888766554
No 283
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=61.57 E-value=40 Score=42.35 Aligned_cols=122 Identities=19% Similarity=0.141 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhHHHhhhcCC-ccCCCcEEEEeccccHHHHHHHHHHhhc
Q 000237 1450 QQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDIAERRASNS-IEEIHPSLIICPSTLVGHWAFEIEKFID 1525 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~~~r~~~~~-~~~~~ptLIVcP~SLl~qW~~Ei~kf~~ 1525 (1806)
|.+++..+......+ .|+ ++.-..|.||+..+.++...+......... ......+|.+|+..-.-+|. ... .
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i---~~~-~ 99 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI---AAG-A 99 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH---Hcc-C
Confidence 555665555444433 244 677899999999999999887764321111 00113456667654333332 222 2
Q ss_pred cCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhcc----ccceEEEEcccccc
Q 000237 1526 VSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQ----LLWNYCILDEGHII 1584 (1806)
Q Consensus 1526 ~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~----i~w~~VILDEaH~I 1584 (1806)
.|++.++.-....+. .+. ... ++-+.+|...+++.. -.|..|||||+|.+
T Consensus 100 HPDl~~i~~~~~~~~-~~~-----~~~---I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m 153 (365)
T PRK07471 100 HGGLLTLERSWNEKG-KRL-----RTV---ITVDEVRELISFFGLTAAEGGWRVVIVDTADEM 153 (365)
T ss_pred CCCeEEEeccccccc-ccc-----ccc---ccHHHHHHHHHHhCcCcccCCCEEEEEechHhc
Confidence 255444321111110 000 011 245666665555442 35889999999988
No 284
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=60.83 E-value=24 Score=44.99 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=34.0
Q ss_pred ccceEEEEcccccccChhhHHHHHHHHh-------hhcc-eEEeccCCCCCChhhHHhhhhhh
Q 000237 1571 LLWNYCILDEGHIIKNSKSKITVAVKQL-------KAAH-RLILSGTPIQNNITDLWSLFDFL 1625 (1806)
Q Consensus 1571 i~w~~VILDEaH~IKN~~Sk~skalk~L-------~A~~-RLlLTGTPIqNnl~ELwSLL~FL 1625 (1806)
-.|..+|+||+|. .|..+..+..+ +.+- .+++|+|--...+..+|.=.-.+
T Consensus 158 ~~y~viiLDeahE----RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 158 GRYGVIILDEAHE----RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLL 216 (699)
T ss_pred ccccEEEechhhh----hhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCee
Confidence 3599999999995 44444444433 3343 46799998877777777644444
No 285
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=60.37 E-value=24 Score=44.72 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=20.1
Q ss_pred ce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1466 HG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1466 gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|+ ++.-..|.|||..+.++...+..
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44 67789999999999998776544
No 286
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=60.11 E-value=86 Score=40.38 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=18.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHhH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~ 1489 (1806)
-+|.-+.|+|||.-+-++.....
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~ 155 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Confidence 47888999999988777765543
No 287
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.99 E-value=52 Score=43.76 Aligned_cols=175 Identities=21% Similarity=0.180 Sum_probs=106.9
Q ss_pred chhhhHHHHHHHHhhcC-ChhhHHHHHHHHHh---h--ccCCceeeecccccchhhhhhhhhhhH-----HhHHhhHHHH
Q 000237 528 PVRETCAQALGAAFKYM-HPSLVYETLYILLQ---M--QRRPEWEIRHGSLLGIKYLVAVRQEML-----HGLLGYVLPA 596 (1806)
Q Consensus 528 PVRET~AQ~Lgall~~m-~~~~v~~~~~iLl~---~--q~~~~WEvrHGgLLGiKYlvAVR~dll-----~~lL~~Vl~a 596 (1806)
||--..-.+||+....= -..+|.+.+--|+. . .+-+.-+||-.+++=+=-+.-.|..=+ +.+++.=.--
T Consensus 145 p~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~ 224 (1005)
T KOG1949|consen 145 PVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEE 224 (1005)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHH
Confidence 44334444566543332 24457666655411 0 112556777766654433333333222 4456666666
Q ss_pred HHccCCCCCchHHHhHHhhhhhhHHHHHhhchhh-HHHHHHHHHHhhcCCCCCCcch-HHHHHHHHHHhcCchhhHHhhc
Q 000237 597 CRAGLEDPDDDVRAVAADALIPTAAAIVALDGQT-LHSIVMLLWDILLDLDDLSPST-SSVMNLLAEIYSQEEMIPKMVG 674 (1806)
Q Consensus 597 ~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~~-l~~il~~LWd~L~~lDDLs~St-~svM~LLa~l~s~~~v~~~~~~ 674 (1806)
...=|+|+--|||++|-.-+.-|...|..+-|.+ +..++.-+-|-+.. |=++++ -||.+=|-.+...
T Consensus 225 l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~--dt~s~VR~svf~gl~~~l~n--------- 293 (1005)
T KOG1949|consen 225 LYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAF--DTSSDVRCSVFKGLPMILDN--------- 293 (1005)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhh--ccchheehhHhcCcHHHHcC---------
Confidence 7777899999999999999999999999987664 56666655554332 211111 1222222222222
Q ss_pred cccccccccchhcccccCCCCCCCCCCchhhhcccccccccccccchhhHHHHHHHHHHHHHh
Q 000237 675 ATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEA 737 (1806)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~ 737 (1806)
+..-..|..+.|+|=|-|.-+.++||.|+..-|..+=..
T Consensus 294 ------------------------p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 294 ------------------------PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred ------------------------ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 222224999999999999999999999999988877544
No 288
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=59.94 E-value=7.1 Score=45.84 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=63.3
Q ss_pred EEE-cCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHhhc-cCCceEEEEecChhHH--H
Q 000237 1468 ILC-DDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKFID-VSLMSTLQYVGSAQDR--I 1542 (1806)
Q Consensus 1468 ILA-DdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf~~-~p~l~vliy~Gs~~~R--~ 1542 (1806)
+|| .-.|+|||..- +++.+.... ..++.-.+||+|... |..|-.+|..+|.. .|..++.+|.|+-.-+ .
T Consensus 82 vlcqaksgmgktavf--vl~tlqqie----pv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkde 155 (387)
T KOG0329|consen 82 VLCQAKSGMGKTAVF--VLATLQQIE----PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDE 155 (387)
T ss_pred hheecccCCCceeee--ehhhhhhcC----CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccH
Confidence 444 46899999542 222222111 112225689999854 77788777665542 2888998888865322 1
Q ss_pred HHHhhhcCCcEEEeeHHHHHhhH--hhhccccceEEEEcccccc
Q 000237 1543 ALREQFDKHNVIITSYDVVRKDA--DYLGQLLWNYCILDEGHII 1584 (1806)
Q Consensus 1543 ~l~~~l~~~dVVITSYe~Lr~di--~~L~~i~w~~VILDEaH~I 1584 (1806)
.+... ...||+.|...+...+ ..+.--+....|+|||..+
T Consensus 156 e~lk~--~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 156 ELLKN--CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred HHHhC--CCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH
Confidence 11112 4568888877664322 1233334567899999865
No 289
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=59.85 E-value=29 Score=35.22 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhccCChhhhHHHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHh
Q 000237 1263 LINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENA 1330 (1806)
Q Consensus 1263 lid~l~vl~~~~p~~~~~l~~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~ 1330 (1806)
-.-+|..|+-++-.=+ .-...+-.++..++..|+++.+.|=..|-+|++++|...+.+++..+++.-
T Consensus 20 Ra~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~~y 86 (92)
T PF10363_consen 20 RAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLDEY 86 (92)
T ss_pred HHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 3456777777776655 122233445566788999999999999999999999999999999988764
No 290
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=59.22 E-value=1.1e+02 Score=42.61 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=18.4
Q ss_pred EEcCCCCchHHHHHHHHHHhHH
Q 000237 1469 LCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1469 LADdMGLGKTlqaIalia~l~~ 1490 (1806)
+.=.+|.|||.++-.++..+..
T Consensus 786 IyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 786 ISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999888766543
No 291
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.91 E-value=40 Score=43.93 Aligned_cols=23 Identities=30% Similarity=0.208 Sum_probs=18.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHhH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~ 1489 (1806)
-++.-..|.|||..+..+...+.
T Consensus 38 ~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 38 ILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred EEEECCCCccHHHHHHHHHHHHc
Confidence 48889999999998877765543
No 292
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=58.05 E-value=1.1e+02 Score=36.96 Aligned_cols=185 Identities=16% Similarity=0.226 Sum_probs=107.3
Q ss_pred Cceeeecccc-cchhhhhh--hhhhhHHhHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchhhHHHHHHHHH
Q 000237 563 PEWEIRHGSL-LGIKYLVA--VRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLLW 639 (1806)
Q Consensus 563 ~~WEvrHGgL-LGiKYlvA--VR~dll~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~~l~~il~~LW 639 (1806)
+.|.-..|.- .-+.|+|. +....+.+.++-|+|.++.=+.|.+-.+|.-+...| .+|++.-+... |
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL----~~ll~~~~~~~-------~ 155 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLL----HHLLEKVPAAE-------W 155 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHH----HHHHHhCChhh-------h
Confidence 4899888766 78999997 344455789999999999999999999999998888 44444333322 7
Q ss_pred HhhcCCCCCCcchHHHH-H-HHHHHhcCchhhHHhhccccccccccchhcccccCCCCCCCCCCchhhhccccccccccc
Q 000237 640 DILLDLDDLSPSTSSVM-N-LLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMR 717 (1806)
Q Consensus 640 d~L~~lDDLs~St~svM-~-LLa~l~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlr 717 (1806)
+.|.+- --++|+ + |.-.|+-.|.+.+ ..++ +
T Consensus 156 ~~L~~t-----Gl~~v~~~al~~~L~~LP~~tp----------------------------~~~s--~------------ 188 (282)
T PF10521_consen 156 DILRRT-----GLFSVFEDALFPCLYYLPPITP----------------------------EDES--L------------ 188 (282)
T ss_pred HHHHHc-----ChHHHHHHHHHHHhhcCCCCCC----------------------------chhh--H------------
Confidence 776552 001111 1 1122332332211 0111 0
Q ss_pred ccchhhHHHHHHHHHHHHHhccccccccCCCCCCCchhchhhHHHH-HHHHHhccch---HHHHHHHHHHHHHHhcCChh
Q 000237 718 HSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRI-VFQNLLLESN---EEILQCSDRVWRLLVQSPVE 793 (1806)
Q Consensus 718 HsitsVR~a~l~tL~~ll~~~~~~~~~~~~~~~~W~~~i~~~~LR~-vFQnlLlE~~---~~I~~~s~~vW~~ll~~~~~ 793 (1806)
.+=..|.-||..|+.+....+ +....+ -+.++||. |+|++.-+.+ ..++...++.=..++.+..-
T Consensus 189 ----~Ll~~ay~~L~~L~~~~~~~~----~~~r~~---~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi 257 (282)
T PF10521_consen 189 ----ELLQAAYPALLSLLKTQENDD----SNPRST---WLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGI 257 (282)
T ss_pred ----HHHHHHHHHHHHHHHhhccCC----cccchH---HHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhcc
Confidence 011234555555554432100 122333 56777877 9999999999 88888877776666654322
Q ss_pred hHHHhhhhhHHHHHHHhhcCCCC
Q 000237 794 DLEAAGGKFMSSWIELATTPFGS 816 (1806)
Q Consensus 794 ~~~~~~~~~~~~wl~L~mtP~g~ 816 (1806)
....-....+..+...+..|++.
T Consensus 258 ~~~~hL~rii~~l~~~l~npf~~ 280 (282)
T PF10521_consen 258 SSVKHLQRIIPVLSQILENPFGT 280 (282)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcC
Confidence 22222233344456666666654
No 293
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=57.37 E-value=58 Score=42.69 Aligned_cols=41 Identities=22% Similarity=0.109 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhcC---CceEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1450 QQEGINWLAFLKRFK---LHGILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~---~gGILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|...+..|......+ .+.++.-+.|.|||..+-.+...+..
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 555555554433333 24588999999999999888766543
No 294
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=57.19 E-value=66 Score=41.34 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=18.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHhH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~ 1489 (1806)
-+|.-..|+|||..+-++.....
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~ 173 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYIL 173 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 47889999999998877766544
No 295
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.17 E-value=34 Score=45.53 Aligned_cols=41 Identities=22% Similarity=0.110 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1450 QQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|...+..|......+ .|. |+.-..|.|||..+.++...+..
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 555555554443333 345 78899999999999888876554
No 296
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.15 E-value=13 Score=49.68 Aligned_cols=176 Identities=20% Similarity=0.254 Sum_probs=102.8
Q ss_pred hhhHHHHHHHHHhhccCCceeeecccccchhhhhhhhhhhHHhHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHh
Q 000237 546 PSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVA 625 (1806)
Q Consensus 546 ~~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKYlvAVR~dll~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~ 625 (1806)
|+......+.++.=-.++-|++||= .||=.+.+|- +.+..+...-++.+|.|.+-=||..||... +.+-.
T Consensus 81 P~~a~~avnt~~kD~~d~np~iR~l---Alrtm~~l~v---~~i~ey~~~Pl~~~l~d~~~yvRktaa~~v----akl~~ 150 (734)
T KOG1061|consen 81 PDLAILAVNTFLKDCEDPNPLIRAL---ALRTMGCLRV---DKITEYLCDPLLKCLKDDDPYVRKTAAVCV----AKLFD 150 (734)
T ss_pred chHHHhhhhhhhccCCCCCHHHHHH---HhhceeeEee---hHHHHHHHHHHHHhccCCChhHHHHHHHHH----HHhhc
Confidence 3333344444444444578999982 2333333333 568888899999999999999999999875 44545
Q ss_pred hchhhH--HHHHHHHHHhhcCCC-C-CCcchHHHHHHHHHHhcCc---------hhhHHhhccccccccccchhcccccC
Q 000237 626 LDGQTL--HSIVMLLWDILLDLD-D-LSPSTSSVMNLLAEIYSQE---------EMIPKMVGATSKQEFDLNEVVRADDV 692 (1806)
Q Consensus 626 ~~~~~l--~~il~~LWd~L~~lD-D-Ls~St~svM~LLa~l~s~~---------~v~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1806)
..++.+ ..++..|||.+.|.| + -+.++++++..... +| +++..+.... .+.-+.+.+.-.+-.
T Consensus 151 ~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~---~~~~~~~~l~~~~~~~lL~al-~ec~EW~qi~IL~~l 226 (734)
T KOG1061|consen 151 IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES---HPSVNLLELNPQLINKLLEAL-NECTEWGQIFILDCL 226 (734)
T ss_pred CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh---CCCCCcccccHHHHHHHHHHH-HHhhhhhHHHHHHHH
Confidence 555543 458999999998543 2 23333333322211 22 2222222111 111111111111112
Q ss_pred CCCCCCCCCchhhhcccccccccccccchhhHHHHHHHHHHHHHh
Q 000237 693 GEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEA 737 (1806)
Q Consensus 693 ~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~ 737 (1806)
-.+....+.. ...+.-|+-|++-|+-+.|=.++++-+..++..
T Consensus 227 ~~y~p~d~~e--a~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~ 269 (734)
T KOG1061|consen 227 AEYVPKDSRE--AEDICERLTPRLQHANSAVVLSAVKVILQLVKY 269 (734)
T ss_pred HhcCCCCchh--HHHHHHHhhhhhccCCcceEeehHHHHHHHHHH
Confidence 2222223334 667888999999999999999999988888754
No 297
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=56.43 E-value=63 Score=39.93 Aligned_cols=150 Identities=16% Similarity=0.142 Sum_probs=79.1
Q ss_pred cccchHHHHHHHHHHHHhhcCC--ce-EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKL--HG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEI 1520 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~--gG-ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei 1520 (1806)
..++|+|....+.+......+. |+ ++.-..|+||+..+.+++..+..... ..++ .|+. -+|.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~-----~~~~----~c~~---c~~~--- 67 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP-----DPAA----AQRT---RQLI--- 67 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCC-----CCCC----cchH---HHHH---
Confidence 4689999999987766644432 44 67789999999999999887765321 1111 1221 1121
Q ss_pred HHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhcc----ccceEEEEcccccccChhhHHHHHHH
Q 000237 1521 EKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQ----LLWNYCILDEGHIIKNSKSKITVAVK 1596 (1806)
Q Consensus 1521 ~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~----i~w~~VILDEaH~IKN~~Sk~skalk 1596 (1806)
. -...|++.++...-..... + .-.-++-+.+|...+.+.. -.+.++|||+++.+.. +.....+|
T Consensus 68 ~-~g~HPD~~~i~~~p~~~~~--------k-~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~--~AaNaLLK 135 (319)
T PRK08769 68 A-AGTHPDLQLVSFIPNRTGD--------K-LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR--AACNALLK 135 (319)
T ss_pred h-cCCCCCEEEEecCCCcccc--------c-ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH--HHHHHHHH
Confidence 1 1122454433111100000 0 0012345566655554432 2478999999999832 22333344
Q ss_pred Hh---hhcceEEeccCCCCCChhhHHh
Q 000237 1597 QL---KAAHRLILSGTPIQNNITDLWS 1620 (1806)
Q Consensus 1597 ~L---~A~~RLlLTGTPIqNnl~ELwS 1620 (1806)
-| ..+..++|++.-...=+.-+-|
T Consensus 136 tLEEPp~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 136 TLEEPSPGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred HhhCCCCCCeEEEEECChhhCchHHHh
Confidence 44 4455677776543333333333
No 298
>PRK06835 DNA replication protein DnaC; Validated
Probab=56.32 E-value=1e+02 Score=38.33 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=30.9
Q ss_pred ccchHHHHHHHHHH----HHhhcCCceEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1445 TLRRYQQEGINWLA----FLKRFKLHGILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~----~l~~~~~gGILADdMGLGKTlqaIalia~l~~ 1490 (1806)
..|.++..++.+.. .....+.+-+|.-+.|.|||..+.|++..+..
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 56667767666433 22223344578889999999999988876553
No 299
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=56.29 E-value=35 Score=46.59 Aligned_cols=135 Identities=21% Similarity=0.203 Sum_probs=80.5
Q ss_pred cCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccH---HHHHHHHHHhhccCCceEEEE-ecC
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLV---GHWAFEIEKFIDVSLMSTLQY-VGS 1537 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl---~qW~~Ei~kf~~~p~l~vliy-~Gs 1537 (1806)
.+.|.|.---+|=|||+++..-+....-.+ +.+.||.. -.|. ..|...+-.|.+ +.+.+. .+.
T Consensus 92 lh~g~iaEM~TGEGKTL~atlp~ylnaL~g---------kgVhvVTvNdYLA~RDae~m~~l~~~LG---lsvG~~~~~m 159 (822)
T COG0653 92 LHLGDIAEMRTGEGKTLVATLPAYLNALAG---------KGVHVVTVNDYLARRDAEWMGPLYEFLG---LSVGVILAGM 159 (822)
T ss_pred hcCCceeeeecCCchHHHHHHHHHHHhcCC---------CCcEEeeehHHhhhhCHHHHHHHHHHcC---CceeeccCCC
Confidence 345668888899999998865543322111 34555555 3344 679999999984 444432 222
Q ss_pred -hhHHHHHHhhhcCCcEEEeeHHHHHhh---------HhhhccccceEEEEcccccccChhhHHHHHHHHhhhcceEEec
Q 000237 1538 -AQDRIALREQFDKHNVIITSYDVVRKD---------ADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILS 1607 (1806)
Q Consensus 1538 -~~~R~~l~~~l~~~dVVITSYe~Lr~d---------i~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L~A~~RLlLT 1607 (1806)
+.+|.. .-.+||.-+|-.-+..| .+..-...++|.|+||+..|- --.|+..+++|
T Consensus 160 ~~~ek~~----aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL-----------IDEARtPLiIS 224 (822)
T COG0653 160 SPEEKRA----AYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL-----------IDEARTPLIIS 224 (822)
T ss_pred ChHHHHH----HHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee-----------eeccccceeee
Confidence 222322 23567776664433222 122223468999999998651 11577789999
Q ss_pred cCCCCCChhhHHhhhhhh
Q 000237 1608 GTPIQNNITDLWSLFDFL 1625 (1806)
Q Consensus 1608 GTPIqNnl~ELwSLL~FL 1625 (1806)
| |...+...+..+-+|+
T Consensus 225 G-~~~~~~~~Y~~~~~~v 241 (822)
T COG0653 225 G-PAEDSSELYKKVDDLV 241 (822)
T ss_pred c-ccccCchHHHHHHHHH
Confidence 9 9988854444444444
No 300
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=55.38 E-value=64 Score=39.90 Aligned_cols=145 Identities=10% Similarity=0.026 Sum_probs=76.9
Q ss_pred ccchHHHHHHHHHHHHhhcCC--ce-EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKL--HG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIE 1521 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~--gG-ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~ 1521 (1806)
.++|+|....+.+......++ |+ ++.-..|+||+..+..+...+...... ...|+. |+. +.-+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~---~~~Cg~----C~s------C~~~~ 69 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ---SEACGF----CHS------CELMQ 69 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC---CCCCCC----CHH------HHHHH
Confidence 578888888877766544433 45 777899999999999998877654321 111121 111 11111
Q ss_pred HhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhc----cccceEEEEcccccccChhhHHHHHHHH
Q 000237 1522 KFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLG----QLLWNYCILDEGHIIKNSKSKITVAVKQ 1597 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~----~i~w~~VILDEaH~IKN~~Sk~skalk~ 1597 (1806)
.. ..|++..+.-.+..+ .++-+.+|...+.+. .-.|..+|||++|++. .......+|-
T Consensus 70 ~g-~HPD~~~i~p~~~~~---------------~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--~~AaNaLLKt 131 (319)
T PRK06090 70 SG-NHPDLHVIKPEKEGK---------------SITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN--ESASNALLKT 131 (319)
T ss_pred cC-CCCCEEEEecCcCCC---------------cCCHHHHHHHHHHHhhCcccCCceEEEecchhhhC--HHHHHHHHHH
Confidence 11 124443332111000 124455555444432 2348899999999984 2223334444
Q ss_pred h---hhcceEEeccCCCCCChhhHHh
Q 000237 1598 L---KAAHRLILSGTPIQNNITDLWS 1620 (1806)
Q Consensus 1598 L---~A~~RLlLTGTPIqNnl~ELwS 1620 (1806)
| ..+..++|+.+-...=+.-+.|
T Consensus 132 LEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 132 LEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred hcCCCCCeEEEEEECChhhChHHHHh
Confidence 4 4445566665543333333444
No 301
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=54.82 E-value=68 Score=40.45 Aligned_cols=127 Identities=15% Similarity=0.128 Sum_probs=78.5
Q ss_pred hhcccHHHHHHHHHHHhccchhhhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHHHHHHHHHhhccCChh---
Q 000237 1204 ISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEA--- 1280 (1806)
Q Consensus 1204 i~RrGA~~al~~l~~~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid~l~vl~~~~p~~~~~--- 1280 (1806)
-.||.|.--|..||++|+...+.-+-..=..+..-.... +......---++.++.+++......
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~-------------~~~~w~~KD~Al~Li~ala~k~~t~~~G 292 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASN-------------PSNNWRSKDGALYLIGALASKGSTTKSG 292 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------TTT-HHHHHHHHHHHHHHHBSS--BTTB
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhC-------------CcccHHHHHHHHHHHHHHHhhhccccCC
Confidence 378999999999999999998776643322222211000 0011112223677777777666321
Q ss_pred ---------hhHHHHhh-hHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCccchhhcc
Q 000237 1281 ---------LKPKLLTL-LPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQ 1344 (1806)
Q Consensus 1281 ---------l~~~~~~l-lp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~r~ 1344 (1806)
+...+.+. +|-+. .-.+.+.++|--|-|++.++...++.+.+..++..++..|++...+..-.
T Consensus 293 vt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~ty 365 (370)
T PF08506_consen 293 VTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTY 365 (370)
T ss_dssp -S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHH
T ss_pred cccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhh
Confidence 12222222 35444 33378899999999999999999999999999999999999876654433
No 302
>PRK08727 hypothetical protein; Validated
Probab=54.82 E-value=58 Score=38.08 Aligned_cols=22 Identities=36% Similarity=0.312 Sum_probs=17.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHh
Q 000237 1467 GILCDDMGLGKTLQASAIVASD 1488 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l 1488 (1806)
-+|.-..|.|||.-+.++....
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAA 65 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4888899999998888776653
No 303
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=54.75 E-value=9e+02 Score=35.08 Aligned_cols=273 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhccc-hhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHhhccccCCCCccCCCCCCCcchhHHH
Q 000237 882 TNTRVVTASALGIFASKLHEG-SIQFVIDPLWNALTSFSGVQRQVAAMVFISWFKEIKSEELPGSAAVLPNLPGHLKQWL 960 (1806)
Q Consensus 882 ~~tRi~aA~alG~l~~~~~~~-~~~~~~~~L~~~L~S~sa~qR~~aalvi~ewa~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1806)
..+|+.|-+.|-.+.-++.++ .++.+..-++.+++.+.+-=|..|-..+.+--...+.- -+.-...+.
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~-----------~~~daniF~ 505 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI-----------PPSDANIFP 505 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC-----------CcccchhhH
Q ss_pred HHHHhccCCCCCCCCC---CCChhhhhhHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhhHHHHHHhhccC
Q 000237 961 LDLLACSDPTYPTKDS---LLPYAELSRTYGKMRNEASQLLRAMETSSMFTEMLSANEIDVESLSADNAISFASKLQLLG 1037 (1806)
Q Consensus 961 ~~l~~~l~~~~~~~~~---~~~Y~El~~~l~~lr~ec~~Ll~~~~~~~~~~~~~~~~~ip~~~~~v~~~ie~A~~~~~~~ 1037 (1806)
+-+.+.|+..+.+... -..|.+=...|...-.--..+-...+..|| .+..
T Consensus 506 eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~---------------------------~n~~ 558 (1431)
T KOG1240|consen 506 EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGM---------------------------LNDP 558 (1431)
T ss_pred hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhccc---------------------------ccCc
Q ss_pred -CCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCCCCcchH-HHHHhhhhhchHH
Q 000237 1038 -SNSDGSESLSRQMLDDIESIKQRMLTTSGYLKCVQSNLHVTVSALVAAAVVWMSELPARLNPIIL-PLMASIKREQEEK 1115 (1806)
Q Consensus 1038 -~~l~~~~~~~~~~~~~le~~r~~l~~~i~~~~~~~~~~~~~V~A~~A~A~v~l~~LP~KLNPiIk-pLMeSIK~EEn~~ 1115 (1806)
++-..... +...-++++..|...+.+-+ .+--|+|| .||+
T Consensus 559 nset~~~~~----------------------~~~~~~~L~~~V~~~v~sLl-------sd~~~~Vkr~Lle--------- 600 (1431)
T KOG1240|consen 559 NSETAPEQN----------------------YNTELQALHHTVEQMVSSLL-------SDSPPIVKRALLE--------- 600 (1431)
T ss_pred ccccccccc----------------------cchHHHHHHHHHHHHHHHHH-------cCCchHHHHHHHH---------
Q ss_pred HHHHHHHHHHHHHHHhh-cCCCCChhHHHHHhhhhccCCCCCCCccccCCCccccccccccccccccCcccccccccCCC
Q 000237 1116 LQEKAAEALAELIADCI-ARKPSPNDKLIKNICSLTSMDPCETPQAAAMGSMEIIDDQDFLSFGSSTGKQKSRAHMLAGG 1194 (1806)
Q Consensus 1116 LQ~~sA~sla~Li~~~~-~~~~~p~~KIikNLc~flC~D~~~tP~~~~~~~~~~~~~~gilsl~~~~~~~~~~~~~~~~~ 1194 (1806)
.++.+|. =+|..-||=|..-||+||- ++ +
T Consensus 601 ----------~i~~LC~FFGk~ksND~iLshLiTfLN------------------------------Dk-D--------- 630 (1431)
T KOG1240|consen 601 ----------SIIPLCVFFGKEKSNDVILSHLITFLN------------------------------DK-D--------- 630 (1431)
T ss_pred ----------HHHHHHHHhhhcccccchHHHHHHHhc------------------------------Cc-c---------
Q ss_pred ccccccchhhhcccHHHHHHHHHHHhccchhhhch---------hhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHH
Q 000237 1195 EDRSRVEGFISRRGSELALRHLCGKFGVSLFDKLP---------KLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILIN 1265 (1806)
Q Consensus 1195 ~~~~~~~~~i~RrGA~~al~~l~~~fg~~l~~~lP---------~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid 1265 (1806)
.+....+|++++ .+.|.|.--|...+. |.++..--..+.
T Consensus 631 -----------------------w~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~lt---------D~EE~Viv~aL~ 678 (1431)
T KOG1240|consen 631 -----------------------WRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLT---------DGEEAVIVSALG 678 (1431)
T ss_pred -----------------------HHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhcc---------CcchhhHHHHHH
Q ss_pred HHHHHHHhhccCChhhh--HHHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 000237 1266 NIQLVRSIAPMLDEALK--PKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSM 1318 (1806)
Q Consensus 1266 ~l~vl~~~~p~~~~~l~--~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~ 1318 (1806)
+|++| +.-++. +-+.+++..++.+|.||+.-||+++---|++++...
T Consensus 679 ~ls~L------ik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 679 SLSIL------IKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHH------HHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
No 304
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=54.66 E-value=91 Score=39.42 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=18.1
Q ss_pred EEEcCCCCchHHHHHHHHHHhH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~ 1489 (1806)
+|.-..|+|||..+-++.....
T Consensus 140 ~l~G~~G~GKThL~~ai~~~l~ 161 (405)
T TIGR00362 140 FIYGGVGLGKTHLLHAIGNEIL 161 (405)
T ss_pred EEECCCCCcHHHHHHHHHHHHH
Confidence 7889999999998877776544
No 305
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=54.36 E-value=17 Score=44.17 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=78.7
Q ss_pred EEE-cCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc----cHHHHHHHHHHhhccCCceEEEEecChhHHH
Q 000237 1468 ILC-DDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST----LVGHWAFEIEKFIDVSLMSTLQYVGSAQDRI 1542 (1806)
Q Consensus 1468 ILA-DdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S----Ll~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~ 1542 (1806)
||| .-.|.|||-.- +.-.... - ......--.+|++|.. -+.|-+.|+.+++ .+++++..|...-|.
T Consensus 125 iLaRaKNGTGKT~a~---~IP~Lek-i--d~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~---~i~vmvttGGT~lrD 195 (459)
T KOG0326|consen 125 ILARAKNGTGKTAAY---CIPVLEK-I--DPKKNVIQAIILVPTRELALQTSQVCKELSKHL---GIKVMVTTGGTSLRD 195 (459)
T ss_pred hhhhccCCCCCccce---echhhhh-c--CccccceeEEEEeecchhhHHHHHHHHHHhccc---CeEEEEecCCccccc
Confidence 454 35799999532 2111111 0 0111224579999944 3467888888886 488888888887766
Q ss_pred HHHhhhcCCcEEEeeHHHHHhhH----hhhccccceEEEEcccccccChhh--HHHHHHHHhh-hcceEEeccC
Q 000237 1543 ALREQFDKHNVIITSYDVVRKDA----DYLGQLLWNYCILDEGHIIKNSKS--KITVAVKQLK-AAHRLILSGT 1609 (1806)
Q Consensus 1543 ~l~~~l~~~dVVITSYe~Lr~di----~~L~~i~w~~VILDEaH~IKN~~S--k~skalk~L~-A~~RLlLTGT 1609 (1806)
.+..-.....++|.|-..+-... ..+. +-..+|+|||..+-+..- ...+.+.-|. .+..++.|+|
T Consensus 196 DI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls--~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySAT 267 (459)
T KOG0326|consen 196 DIMRLNQTVHLVVGTPGRILDLAKKGVADLS--DCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSAT 267 (459)
T ss_pred ceeeecCceEEEEcCChhHHHHHhcccccch--hceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecc
Confidence 65555456678888877664332 2222 346899999998865332 2334444443 4445666777
No 306
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=54.24 E-value=48 Score=41.30 Aligned_cols=46 Identities=26% Similarity=0.311 Sum_probs=34.9
Q ss_pred cchHHHHHHHHHHHHhhcCCce-EEEcCCCCchHHHHHHHHHHhHHH
Q 000237 1446 LRRYQQEGINWLAFLKRFKLHG-ILCDDMGLGKTLQASAIVASDIAE 1491 (1806)
Q Consensus 1446 LRpYQ~eGV~wL~~l~~~~~gG-ILADdMGLGKTlqaIalia~l~~~ 1491 (1806)
++|+|...-+-|......-.|+ ++.-..|.|||..+..+...+...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5788888887777664444456 567899999999999998877654
No 307
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=54.00 E-value=74 Score=45.27 Aligned_cols=140 Identities=18% Similarity=0.145 Sum_probs=77.4
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHh
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKF 1523 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf 1523 (1806)
..|-+-|++++..+. ..+.-++|--..|.|||...-++.......+ .+++.++|..-.- ..+.+-
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G---------~~V~g~ApTgkAA---~~L~e~ 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAAG---------YRVVGGALAGKAA---EGLEKE 444 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---------CeEEEEcCcHHHH---HHHHHh
Confidence 468999999998763 2233457778999999987766654322211 4566666654332 334333
Q ss_pred hccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHh-hhcc
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-KAAH 1602 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L-~A~~ 1602 (1806)
++.+..+ ++ + +...+. .....+ -.-+++||||+..+. .......++.. .+..
T Consensus 445 ~Gi~a~T---Ia-----s--~ll~~~-------------~~~~~l--~~~~vlVIDEAsMv~--~~~m~~Ll~~~~~~ga 497 (1102)
T PRK13826 445 AGIQSRT---LS-----S--WELRWN-------------QGRDQL--DNKTVFVLDEAGMVA--SRQMALFVEAVTRAGA 497 (1102)
T ss_pred hCCCeee---HH-----H--HHhhhc-------------cCccCC--CCCcEEEEECcccCC--HHHHHHHHHHHHhcCC
Confidence 3211100 00 0 000000 000011 124689999999983 33444555555 4678
Q ss_pred eEEeccCCCCCChhhHHhhhhhh
Q 000237 1603 RLILSGTPIQNNITDLWSLFDFL 1625 (1806)
Q Consensus 1603 RLlLTGTPIqNnl~ELwSLL~FL 1625 (1806)
+++|.|=|-|-...+-=..|..|
T Consensus 498 rvVLVGD~~QL~~V~aG~~f~~l 520 (1102)
T PRK13826 498 KLVLVGDPEQLQPIEAGAAFRAI 520 (1102)
T ss_pred EEEEECCHHHcCCCCCCcHHHHH
Confidence 99999998877655444444444
No 308
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=53.69 E-value=1.7e+02 Score=36.08 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=46.5
Q ss_pred ChhHHHHHHHHHHHhhccCChh-hhHHHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhcc
Q 000237 1259 DPQILINNIQLVRSIAPMLDEA-LKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMT 1319 (1806)
Q Consensus 1259 ~~q~lid~l~vl~~~~p~~~~~-l~~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~ 1319 (1806)
.++-+.-+|+---.++..++.. +...+-..+|.+..+|.|...-||-+|+.+||-|.....
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666667777764 445556679999999999999999999999998876544
No 309
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.51 E-value=42 Score=43.52 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=18.5
Q ss_pred EEEcCCCCchHHHHHHHHHHhH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~ 1489 (1806)
|+.-+.|.|||..+-++...+.
T Consensus 40 Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 40 IFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEECCCCCCHHHHHHHHHHHhc
Confidence 8899999999998888876543
No 310
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=52.91 E-value=28 Score=29.45 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=29.7
Q ss_pred hHHHHhh--hHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 000237 1282 KPKLLTL--LPCIFKCVCHSHVSVRLAASRCITSMAK 1316 (1806)
Q Consensus 1282 ~~~~~~l--lp~~~~~l~~~~~~vR~~aa~c~a~~~~ 1316 (1806)
...+.+. +|.++.+|.|+...+|..|+.++..||+
T Consensus 5 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3445554 8999999999999999999999999884
No 311
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=52.68 E-value=94 Score=34.39 Aligned_cols=133 Identities=18% Similarity=0.150 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhcc
Q 000237 1450 QQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDV 1526 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~ 1526 (1806)
|.+.+..|....+.+ .|. ++.-+.|.||+..+.+++..+....... . .|- .-.....+.... .
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~-------~---~c~---~c~~c~~~~~~~-~ 67 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNE-------D---PCG---ECRSCRRIEEGN-H 67 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CT-------T-----S---SSHHHHHHHTT--C
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCC-------C---CCC---CCHHHHHHHhcc-C
Confidence 566666666555554 245 7778899999999999988765432211 1 111 111222333221 1
Q ss_pred CCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhcc----ccceEEEEcccccccChhhHHHHHHHHh---h
Q 000237 1527 SLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQ----LLWNYCILDEGHIIKNSKSKITVAVKQL---K 1599 (1806)
Q Consensus 1527 p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~----i~w~~VILDEaH~IKN~~Sk~skalk~L---~ 1599 (1806)
|+ +..+......+ ...-+.+|...+.+.. ..+..+|+||+|.+.. ......++-| .
T Consensus 68 ~d--~~~~~~~~~~~-------------~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~--~a~NaLLK~LEepp 130 (162)
T PF13177_consen 68 PD--FIIIKPDKKKK-------------SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE--EAQNALLKTLEEPP 130 (162)
T ss_dssp TT--EEEEETTTSSS-------------SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H--HHHHHHHHHHHSTT
T ss_pred cc--eEEEecccccc-------------hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH--HHHHHHHHHhcCCC
Confidence 33 33333222100 1122455544443332 3488999999999832 1222223333 5
Q ss_pred hcceEEeccCCCCC
Q 000237 1600 AAHRLILSGTPIQN 1613 (1806)
Q Consensus 1600 A~~RLlLTGTPIqN 1613 (1806)
.+.+++|+.+-..+
T Consensus 131 ~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 131 ENTYFILITNNPSK 144 (162)
T ss_dssp TTEEEEEEES-GGG
T ss_pred CCEEEEEEECChHH
Confidence 66778887754433
No 312
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=52.51 E-value=40 Score=42.86 Aligned_cols=94 Identities=21% Similarity=0.259 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHHHHhhcccCCcCCCccccchhhhHHHHHHHHhhcCChhhHHHHHHHHHhhccCCceeeecccccchhh
Q 000237 498 CEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKY 577 (1806)
Q Consensus 498 ~~wLeDlaiRlLCVlaLDRFGDyVSDqVVAPVRET~AQ~Lgall~~m~~~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKY 577 (1806)
|++...+.=+| ++.|.....+ +|+.+-.+|+-+++|+|.+.+.
T Consensus 318 QR~F~~~~p~L-----~~~~~~~~~~-----~k~~yL~ALs~ll~~vP~~vl~--------------------------- 360 (415)
T PF12460_consen 318 QRFFTQVLPKL-----LEGFKEADDE-----IKSNYLTALSHLLKNVPKSVLL--------------------------- 360 (415)
T ss_pred HHHHHHHHHHH-----HHHHhhcChh-----hHHHHHHHHHHHHhhCCHHHHH---------------------------
Confidence 44555555555 5666665544 8999999999999999976222
Q ss_pred hhhhhhhhHHhHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchhhHHHHHHHH
Q 000237 578 LVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQTLHSIVMLL 638 (1806)
Q Consensus 578 lvAVR~dll~~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~~l~~il~~L 638 (1806)
.-++.++|.++.+|.=+|.||+..+-.+|.++..+-...-.+.+++|+..|
T Consensus 361 ----------~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 361 ----------PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRL 411 (415)
T ss_pred ----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 256677888889998899999999999999998887666666777777654
No 313
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=52.36 E-value=58 Score=40.40 Aligned_cols=136 Identities=12% Similarity=0.037 Sum_probs=74.6
Q ss_pred ccchHHHHHHHHHHHHhhcCC--ce-EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKL--HG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIE 1521 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~--gG-ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~ 1521 (1806)
.++|+|+...+.+......++ |+ ++.-+.|.||+..+.++..++....... ...|+ .|+.- +-+.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~--~~~Cg----~C~sC------~~~~ 69 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQG--HKSCG----HCRGC------QLMQ 69 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCC----CCHHH------HHHH
Confidence 468899888877766654443 45 5778999999999999988876542211 11122 13211 1111
Q ss_pred HhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhcc----ccceEEEEcccccccChhhHHHHHHHH
Q 000237 1522 KFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQ----LLWNYCILDEGHIIKNSKSKITVAVKQ 1597 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~----i~w~~VILDEaH~IKN~~Sk~skalk~ 1597 (1806)
. ...|++..+.-.++. -..+-+.+|...+.+.. -.|..+|+|+++.+.. ......+|-
T Consensus 70 ~-g~HPD~~~i~p~~~~---------------~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~--~AaNaLLKt 131 (334)
T PRK07993 70 A-GTHPDYYTLTPEKGK---------------SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTD--AAANALLKT 131 (334)
T ss_pred c-CCCCCEEEEeccccc---------------ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCH--HHHHHHHHH
Confidence 1 122554433211110 02335556655544432 3588999999999832 223334455
Q ss_pred h---hhcceEEeccCC
Q 000237 1598 L---KAAHRLILSGTP 1610 (1806)
Q Consensus 1598 L---~A~~RLlLTGTP 1610 (1806)
| .....++|+.+-
T Consensus 132 LEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 132 LEEPPENTWFFLACRE 147 (334)
T ss_pred hcCCCCCeEEEEEECC
Confidence 5 344455565543
No 314
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.20 E-value=68 Score=42.27 Aligned_cols=41 Identities=22% Similarity=0.158 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhH
Q 000237 1449 YQQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~ 1489 (1806)
.|...++.|......+ .|+ |+.-..|.|||..+-++...+.
T Consensus 20 Gq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 20 GQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445555444333332 245 7889999999998888876654
No 315
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=51.97 E-value=36 Score=45.06 Aligned_cols=153 Identities=15% Similarity=0.214 Sum_probs=71.5
Q ss_pred HHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEe--cc-----ccHHHHHHHHHHhhccCCc
Q 000237 1457 LAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIIC--PS-----TLVGHWAFEIEKFIDVSLM 1529 (1806)
Q Consensus 1457 L~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVc--P~-----SLl~qW~~Ei~kf~~~p~l 1529 (1806)
|+...+.+.-.|+.-|+|.|||.|.--++...-+. +.+ +|.| |. ++...-.+|+.--+|...=
T Consensus 364 ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~--------~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 364 LLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYA--------DNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccc--------cCC--eeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 33344556667889999999999987666543221 112 5655 32 2334445555333321100
Q ss_pred eEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhh-HhhhccccceEEEEcccccccChhhHHHHHHHHh---hhcce-E
Q 000237 1530 STLQYVGSAQDRIALREQFDKHNVIITSYDVVRKD-ADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL---KAAHR-L 1604 (1806)
Q Consensus 1530 ~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~d-i~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L---~A~~R-L 1604 (1806)
-.+-|..... ....|=.+|=..+-+. +..-.-..+..||+||||.=.-..--..-.++.. +.+.+ +
T Consensus 434 YsIRFEdvT~---------~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKli 504 (1042)
T KOG0924|consen 434 YSIRFEDVTS---------EDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLI 504 (1042)
T ss_pred eEEEeeecCC---------CceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEE
Confidence 0001111110 0112333443443321 1111123478999999996321112222233333 33444 4
Q ss_pred EeccCCCCCChhhHHh-hhhhhCCC
Q 000237 1605 ILSGTPIQNNITDLWS-LFDFLMPG 1628 (1806)
Q Consensus 1605 lLTGTPIqNnl~ELwS-LL~FL~Pg 1628 (1806)
+.|+|-=-..+.++|. -=.|-.||
T Consensus 505 VtSATm~a~kf~nfFgn~p~f~IpG 529 (1042)
T KOG0924|consen 505 VTSATMDAQKFSNFFGNCPQFTIPG 529 (1042)
T ss_pred EeeccccHHHHHHHhCCCceeeecC
Confidence 5677765555666555 22355555
No 316
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=51.79 E-value=1e+02 Score=38.32 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=34.9
Q ss_pred cchHHHHHHHHHHHHhhcCC--ce-EEEcCCCCchHHHHHHHHHHhHHH
Q 000237 1446 LRRYQQEGINWLAFLKRFKL--HG-ILCDDMGLGKTLQASAIVASDIAE 1491 (1806)
Q Consensus 1446 LRpYQ~eGV~wL~~l~~~~~--gG-ILADdMGLGKTlqaIalia~l~~~ 1491 (1806)
++|+|+...+-+......+. |+ ++.-..|.||+..+..+...+...
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~ 51 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ 51 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 57888888877766655443 56 567899999999999998877653
No 317
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=51.56 E-value=50 Score=43.78 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=19.6
Q ss_pred EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
++.=+.|.|||..+-+++..+..
T Consensus 42 Lf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 42 IFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEECCCCCCHHHHHHHHHHhhcc
Confidence 78899999999999888876554
No 318
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=50.42 E-value=32 Score=45.42 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=50.5
Q ss_pred CchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccH----HHHHHHHHHhhccCCceEEEEecChhHHHHHHhhhc
Q 000237 1475 LGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLV----GHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFD 1549 (1806)
Q Consensus 1475 LGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl----~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~ 1549 (1806)
-|||...+++|+.+...-.. -.+..|+. +.+. ..-...+.+|++.. .+....|..- .....-.
T Consensus 213 HGKTWf~VpiIsllL~s~~g-------I~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~--~vi~~k~~tI---~~s~pg~ 280 (668)
T PHA03372 213 HGKTWFIIPIISFLLKNIIG-------ISIGYVAHQKHVSQFVLKEVEFRCRRMFPRK--HTIENKDNVI---SIDHRGA 280 (668)
T ss_pred CCceehHHHHHHHHHHhhcC-------ceEEEEeeHHHHHHHHHHHHHHHHhhhcCcc--ceeeecCcEE---EEecCCC
Confidence 59999999999877753221 45667776 3333 33444567787422 2221111100 0000000
Q ss_pred CCcEEEeeHHHHHhhHhhhccccceEEEEcccccccC
Q 000237 1550 KHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1550 ~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN 1586 (1806)
+..++..| ...-..++...|+++++||+|-||-
T Consensus 281 Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~ 313 (668)
T PHA03372 281 KSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKK 313 (668)
T ss_pred cceeeehh----hccCccccCCCCCEEEEehhhccCH
Confidence 11122211 0122457788899999999999963
No 319
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.15 E-value=66 Score=42.56 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhcCC--ce-EEEcCCCCchHHHHHHHHHHhH
Q 000237 1450 QQEGINWLAFLKRFKL--HG-ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~~--gG-ILADdMGLGKTlqaIalia~l~ 1489 (1806)
|...++.|......+. +. |+.-+.|.|||..+-.++..+.
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444444333332 34 6889999999999988886654
No 320
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=50.09 E-value=73 Score=41.89 Aligned_cols=134 Identities=22% Similarity=0.298 Sum_probs=89.1
Q ss_pred hHHhhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhh-chhhHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhcCc
Q 000237 588 GLLGYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVAL-DGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQE 666 (1806)
Q Consensus 588 ~lL~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~-~~~~l~~il~~LWd~L~~lDDLs~St~svM~LLa~l~s~~ 666 (1806)
-.|+.++..+++-|...-.|||-=||+..--++.-|-.- ....+..+-.+|.+.|.+- -----|||.+-..+|+|--
T Consensus 600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~--ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 600 PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGED--YPEVLGSILKAICSIYSVH 677 (975)
T ss_pred cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcc--cHHHHHHHHHHHHHHhhhh
Confidence 478889999999999999999999998654433323221 1345778888888888763 2223466666655555421
Q ss_pred hhhHHhhccccccccccchhcccccCCCCCCCCCCchhhhcccccccccccccchhhHHHHHHHHHHHHHhccccccccC
Q 000237 667 EMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAES 746 (1806)
Q Consensus 667 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~~~~~~~~~~ 746 (1806)
.+ ..-+.| .+.++|+|.|.||.-=.-|-..++.-+.+.-..+.. -
T Consensus 678 ~~----------------------------~~mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe-----y 722 (975)
T COG5181 678 RF----------------------------RSMQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE-----Y 722 (975)
T ss_pred cc----------------------------cccCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc-----c
Confidence 11 011335 899999999999887777777777766666543322 1
Q ss_pred CCCCCCchhchhhHHHHHHH
Q 000237 747 SGGSFWPSFILGDTLRIVFQ 766 (1806)
Q Consensus 747 ~~~~~W~~~i~~~~LR~vFQ 766 (1806)
-+.+.| ||+.|-
T Consensus 723 i~~rEW--------MRIcfe 734 (975)
T COG5181 723 IGVREW--------MRICFE 734 (975)
T ss_pred CCHHHH--------HHHHHH
Confidence 256677 788885
No 321
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=49.98 E-value=94 Score=40.19 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=17.0
Q ss_pred eEEEcCCCCchHHHHHHHHHHh
Q 000237 1467 GILCDDMGLGKTLQASAIVASD 1488 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l 1488 (1806)
-+|.-+.|+|||..+-++...+
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l 165 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYI 165 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHH
Confidence 4688999999998776665543
No 322
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=49.74 E-value=1.4e+02 Score=35.41 Aligned_cols=55 Identities=24% Similarity=0.198 Sum_probs=28.5
Q ss_pred HHHHhcCCCCCCCccCcccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHH
Q 000237 1424 LEQLLDNSHIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQAS 1482 (1806)
Q Consensus 1424 l~~L~d~~~i~~~~ip~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaI 1482 (1806)
++.-+.|+.+++|---..+...|+.+=..+. .....-.|.|+.-.+|+|||..+-
T Consensus 14 l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~----~r~~~l~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 14 LAERLRPKSLDEFIGQEHLKGNLKILIRAAK----KRGEALDHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHH----CTTS---EEEEESSTTSSHHHHHH
T ss_pred hHHhcCCCCHHHccCcHHHHhhhHHHHHHHH----hcCCCcceEEEECCCccchhHHHH
Confidence 4556677777777555555544433211111 011112367999999999996543
No 323
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=49.46 E-value=64 Score=38.49 Aligned_cols=50 Identities=22% Similarity=0.158 Sum_probs=33.9
Q ss_pred cCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHH
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIE 1521 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~ 1521 (1806)
.+.+-+|.=.+|.|||..++|+...+.. .. .+++++-=+.++.+++..+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~-~g--------~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK-AG--------ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH-cC--------CeEEEEEHHHHHHHHHHHHh
Confidence 4556688889999999999999877662 21 45666554555555555443
No 324
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=49.26 E-value=12 Score=51.52 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=69.4
Q ss_pred CceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhhccCCceEEEEecChhHHHH
Q 000237 1465 LHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIA 1543 (1806)
Q Consensus 1465 ~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~ 1543 (1806)
.+..+.+..|.|||+.+-..+...... ..-.++.+|.| +.++.-=.+.+.+-...++++++-..|....-
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~-------~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd-- 1014 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSY-------YPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPD-- 1014 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhcc-------CCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCC--
Confidence 345888999999998774333322221 11268999999 55554333333332223577787777764322
Q ss_pred HHhhhcCCcEEEeeHHHHHhhHhhhcc----ccceEEEEcccccccCh
Q 000237 1544 LREQFDKHNVIITSYDVVRKDADYLGQ----LLWNYCILDEGHIIKNS 1587 (1806)
Q Consensus 1544 l~~~l~~~dVVITSYe~Lr~di~~L~~----i~w~~VILDEaH~IKN~ 1587 (1806)
.......+++|||.+..-........ ..+..+|+||.|-.+..
T Consensus 1015 -~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 -VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred -hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 33456789999999877443332222 23567999999988654
No 325
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=48.87 E-value=78 Score=44.69 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=73.2
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHh
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKF 1523 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf 1523 (1806)
..|-+-|+++|..+.. .+.-.+|-=..|.|||.+.-++... ..... ..++.++|..... ..+..-
T Consensus 345 ~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~~~~~~-~e~~G--------~~V~~~ApTGkAA---~~L~e~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLGVAREA-WEAAG--------YEVRGAALSGIAA---ENLEGG 409 (988)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHHH-HHHcC--------CeEEEecCcHHHH---HHHhhc
Confidence 3588999999987642 1223578889999999864443322 22111 4567777765443 222221
Q ss_pred hccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHh-hhcc
Q 000237 1524 IDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-KAAH 1602 (1806)
Q Consensus 1524 ~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L-~A~~ 1602 (1806)
.+ .... .+...+. .+.+. ...-...+++|+||+..+.. ....+.++.. ....
T Consensus 410 tG-----------i~a~--TI~sll~----------~~~~~--~~~l~~~~vlIVDEASMv~~--~~m~~LL~~a~~~ga 462 (988)
T PRK13889 410 SG-----------IASR--TIASLEH----------GWGQG--RDLLTSRDVLVIDEAGMVGT--RQLERVLSHAADAGA 462 (988)
T ss_pred cC-----------cchh--hHHHHHh----------hhccc--ccccccCcEEEEECcccCCH--HHHHHHHHhhhhCCC
Confidence 11 1000 0000000 00000 00122457999999999843 3344444433 5678
Q ss_pred eEEeccCCCCCChhhHHhhhh
Q 000237 1603 RLILSGTPIQNNITDLWSLFD 1623 (1806)
Q Consensus 1603 RLlLTGTPIqNnl~ELwSLL~ 1623 (1806)
+++|.|=|-|-...+-=+.|.
T Consensus 463 rvVLVGD~~QLpsV~aG~~f~ 483 (988)
T PRK13889 463 KVVLVGDPQQLQAIEAGAAFR 483 (988)
T ss_pred EEEEECCHHHcCCCCCCchHH
Confidence 999999887765543333333
No 326
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=47.89 E-value=43 Score=35.75 Aligned_cols=66 Identities=24% Similarity=0.416 Sum_probs=55.5
Q ss_pred hhHHHHHHhcCCcHHHHHHHHHHHHHHHhhChHhHHHHH------HhhhhcccCCChhHHHHHHHHHHHHHhc
Q 000237 8 LNRLLTLLDTGSTQATRFTAARQIGEIAKTHPQDLNSLL------RKVSQYLRSKSWDTRVAAAHAIGAIAQN 74 (1806)
Q Consensus 8 LdRL~~LLeTGSt~~~R~tAA~Qlgdiak~hP~el~~LL------~rv~~~LrSk~WdTRvAAa~Aig~I~~n 74 (1806)
|-+|+.||++...+.+--.|+--||++++.||.= .+++ .+|...+.+.+=|-|--|=.|++.++.|
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 4578999999889999999999999999999984 4444 5789999999999999999999999876
No 327
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=47.20 E-value=1.2e+02 Score=35.05 Aligned_cols=138 Identities=12% Similarity=0.084 Sum_probs=69.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHH-HHHHHHhhccCCceEEEEecChh----
Q 000237 1465 LHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHW-AFEIEKFIDVSLMSTLQYVGSAQ---- 1539 (1806)
Q Consensus 1465 ~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW-~~Ei~kf~~~p~l~vliy~Gs~~---- 1539 (1806)
+.-++.-..|-|||..++++......++ .+++||= .+-+.| ..|...+-..+.+....+.....
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G---------~~V~ivQ--FlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~ 91 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHG---------KKVGVVQ--FIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQ 91 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCC---------CeEEEEE--EecCCCccCHHHHHhcCCCcEEEECCCCCcccCC
Confidence 3447889999999999999887654432 3555542 333444 23433332112233222111100
Q ss_pred HHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccC----hhhHHHHHHHHhhhcceEEeccCCCCCCh
Q 000237 1540 DRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKN----SKSKITVAVKQLKAAHRLILSGTPIQNNI 1615 (1806)
Q Consensus 1540 ~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN----~~Sk~skalk~L~A~~RLlLTGTPIqNnl 1615 (1806)
++..... .--+.+..-.+.+..-.|++|||||.-..-+ +.......+..-....-++|||--....+
T Consensus 92 ~~~e~~~---------~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 92 DRERDIA---------AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred CcHHHHH---------HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 0000000 0001122223455667899999999765433 33444444444445557999997554444
Q ss_pred hhHHhhh
Q 000237 1616 TDLWSLF 1622 (1806)
Q Consensus 1616 ~ELwSLL 1622 (1806)
.|+..++
T Consensus 163 ie~ADlV 169 (191)
T PRK05986 163 IEAADLV 169 (191)
T ss_pred HHhCchh
Confidence 4443333
No 328
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.17 E-value=20 Score=47.06 Aligned_cols=142 Identities=24% Similarity=0.279 Sum_probs=91.6
Q ss_pred cccHHHHHHHHHHHhccchhhh-chhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHHHHHHHHHhhccCChhhhHH
Q 000237 1206 RRGSELALRHLCGKFGVSLFDK-LPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPK 1284 (1806)
Q Consensus 1206 RrGA~~al~~l~~~fg~~l~~~-lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid~l~vl~~~~p~~~~~l~~~ 1284 (1806)
|+-...||.-|+..||.+++.. +|.|++.++.. +=...+ +=|=+|+ +++--=-.+..|.
T Consensus 372 RkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~------~W~vrE-----------agvLAlG---AIAEGcM~g~~p~ 431 (885)
T KOG2023|consen 372 RKCSAAALDVLANVFGDELLPILLPLLKEHLSSE------EWKVRE-----------AGVLALG---AIAEGCMQGFVPH 431 (885)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcc------hhhhhh-----------hhHHHHH---HHHHHHhhhcccc
Confidence 6667779999999999998765 46666655542 000000 1112222 2222223345566
Q ss_pred HHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhc----cHHHHHHHHHHhhcccCCccchhhccchhHHHHHHHhhcCCc
Q 000237 1285 LLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSM----TINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAE 1360 (1806)
Q Consensus 1285 ~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~----~~~~~~~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~ 1360 (1806)
+-+++|.++.+|-.+.+.||.+...++..+++.. +.+-+..+++.++-.+-|++ -.....|.-+..-+-+.-|.+
T Consensus 432 LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N-K~VQEAAcsAfAtleE~A~~e 510 (885)
T KOG2023|consen 432 LPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN-KKVQEAACSAFATLEEEAGEE 510 (885)
T ss_pred hHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHhccch
Confidence 6688999999999999999999999999998753 22445555555555555442 233344555566677888999
Q ss_pred ccCCcchh
Q 000237 1361 LVPYAPLL 1368 (1806)
Q Consensus 1361 ~~py~~~l 1368 (1806)
++||-.-+
T Consensus 511 LVp~l~~I 518 (885)
T KOG2023|consen 511 LVPYLEYI 518 (885)
T ss_pred hHHHHHHH
Confidence 99987654
No 329
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.91 E-value=1.8e+02 Score=39.86 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=57.2
Q ss_pred HHHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhh--------hccHHHH----HHHHHHhhcccCCccchhhccchhHHH
Q 000237 1283 PKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAK--------SMTINVM----AAVVENAIPMLGDMTSVHARQGAGMLI 1350 (1806)
Q Consensus 1283 ~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~--------~~~~~~~----~~~~~~~~p~l~~~~~~~~r~ga~~~~ 1350 (1806)
+++++++|.+...|+++..||-.-||.|+..+-. +.+-+-+ ..++...+-.+.-+++ ..-+=-..+|
T Consensus 494 ~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~-~EneylmKaI 572 (960)
T KOG1992|consen 494 EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK-AENEYLMKAI 572 (960)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcc-cccHHHHHHH
Confidence 7889999999999999999999999999987632 2222222 2233333333332322 1122234567
Q ss_pred HHHHhhcCCcccCCcchhhhh
Q 000237 1351 SLLVQGLGAELVPYAPLLVVP 1371 (1806)
Q Consensus 1351 ~~~~~~~~~~~~py~~~l~~p 1371 (1806)
-+++..+...++|+...++.-
T Consensus 573 mRii~i~~~~i~p~~~~~l~~ 593 (960)
T KOG1992|consen 573 MRIISILQSAIIPHAPELLRQ 593 (960)
T ss_pred HHHHHhCHHhhhhhhhHHHHH
Confidence 777778888888988876443
No 330
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.69 E-value=1.1e+02 Score=40.92 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1450 QQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|...++.|......+ .|. |+.=..|.|||..+.++...+..
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 344444443333332 245 67789999999999888766543
No 331
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.58 E-value=99 Score=40.00 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=72.1
Q ss_pred HHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHH---HHHhhcccCCccchhhccchhHHHHHHHhhcCCc
Q 000237 1284 KLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAV---VENAIPMLGDMTSVHARQGAGMLISLLVQGLGAE 1360 (1806)
Q Consensus 1284 ~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~---~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~ 1360 (1806)
-+-+.+-.+..-.+.+.+-+|+||+||++.+++-+|.+++.+. ++.++=-|-|..+...-.-++-++..+++.....
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 3444455556677889999999999999999999898887653 4444444455555555455666666666655433
Q ss_pred -ccCCcchhhhhhhhccccCCchhhhhhhhhhhhcccc
Q 000237 1361 -LVPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVPL 1397 (1806)
Q Consensus 1361 -~~py~~~l~~pll~~msd~~~~vr~~~~~~fa~lv~l 1397 (1806)
+-||-.=..+-+-.-+.+.++..|-.+---|..|.++
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 3455443333233344555667787776667666553
No 332
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=45.92 E-value=73 Score=42.29 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=19.2
Q ss_pred Cce-EEEcCCCCchHHHHHHHHHHhH
Q 000237 1465 LHG-ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1465 ~gG-ILADdMGLGKTlqaIalia~l~ 1489 (1806)
.|. +++-..|.|||..+-.+...+.
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344 6689999999998888775543
No 333
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=45.75 E-value=1.3e+02 Score=36.27 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=29.3
Q ss_pred cceEEEEcccccccChh--hHHHHHHHHhhhcceEEeccCCCCCChhhHHhhh
Q 000237 1572 LWNYCILDEGHIIKNSK--SKITVAVKQLKAAHRLILSGTPIQNNITDLWSLF 1622 (1806)
Q Consensus 1572 ~w~~VILDEaH~IKN~~--Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL 1622 (1806)
...++|+||+|.+.... ......+.......++++|++....-...+.+-+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 36789999999983322 1122223333456688888876543334444433
No 334
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=45.62 E-value=97 Score=43.25 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=23.0
Q ss_pred HHHHHHH--hhcCCceEEEcCCCCchHHHHHHHHHH
Q 000237 1454 INWLAFL--KRFKLHGILCDDMGLGKTLQASAIVAS 1487 (1806)
Q Consensus 1454 V~wL~~l--~~~~~gGILADdMGLGKTlqaIalia~ 1487 (1806)
++.+... .+...+.||.=+.|.|||..+=++...
T Consensus 196 i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 196 IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHH
Confidence 5555442 233346699999999999887666554
No 335
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=45.57 E-value=1.1e+02 Score=34.35 Aligned_cols=133 Identities=13% Similarity=0.100 Sum_probs=66.0
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHH-HHHHHHhhccCCceEEEEecCh----hHHH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHW-AFEIEKFIDVSLMSTLQYVGSA----QDRI 1542 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW-~~Ei~kf~~~p~l~vliy~Gs~----~~R~ 1542 (1806)
.+.-..|-|||..++++......++ .++++|= .+.+.| ..|..-+-..+.+....+.... .++.
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~~g---------~~v~~vQ--FlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~ 74 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALGHG---------YRVGVVQ--FLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDE 74 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---------CeEEEEE--EeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChH
Confidence 4456679999999999886544332 3555532 111113 2333332222444433322110 0010
Q ss_pred HHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccC----hhhHHHHHHHHhhhcceEEeccCCCCCChhhH
Q 000237 1543 ALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKN----SKSKITVAVKQLKAAHRLILSGTPIQNNITDL 1618 (1806)
Q Consensus 1543 ~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN----~~Sk~skalk~L~A~~RLlLTGTPIqNnl~EL 1618 (1806)
...... -+.+..-.+.+....++++||||.-..-+ +.......++.-....-++|||--.+..+.|+
T Consensus 75 ~~~~~a---------~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 75 EDIAAA---------AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred HHHHHH---------HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 000000 12223333455667899999999765522 33344444444445557999997655544444
Q ss_pred Hh
Q 000237 1619 WS 1620 (1806)
Q Consensus 1619 wS 1620 (1806)
..
T Consensus 146 AD 147 (159)
T cd00561 146 AD 147 (159)
T ss_pred Cc
Confidence 33
No 336
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=45.41 E-value=50 Score=41.98 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=76.3
Q ss_pred hcCChhHHHHHHHHHHHHhhhhc-cHHHHHHHHHHhhcccCCccchhhccchhHHHHHHHhhcCCcccCCcchhhhhhhh
Q 000237 1296 VCHSHVSVRLAASRCITSMAKSM-TINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLR 1374 (1806)
Q Consensus 1296 l~~~~~~vR~~aa~c~a~~~~~~-~~~~~~~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~py~~~l~~pll~ 1374 (1806)
+.+.....|..+++|+|.+.... ..+.+..+++.....+........|.++++++.-+...+-..--|...-++--+++
T Consensus 199 ~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~ 278 (415)
T PF12460_consen 199 LSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLE 278 (415)
T ss_pred HcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33456899999999999999775 44567788887777774455667899999999999998888878888777766777
Q ss_pred ccccCCchhhhhhhhhhhhccc
Q 000237 1375 CMSDCDQSVRQSVTRSFASLVP 1396 (1806)
Q Consensus 1375 ~msd~~~~vr~~~~~~fa~lv~ 1396 (1806)
.+++ +.+...+..+|.-++.
T Consensus 279 lL~~--~~~g~~aA~~f~il~~ 298 (415)
T PF12460_consen 279 LLSS--PELGQQAAKAFGILLS 298 (415)
T ss_pred HhCC--hhhHHHHHHHHhhHhc
Confidence 7777 4566777777776653
No 337
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.36 E-value=1.2e+02 Score=38.42 Aligned_cols=126 Identities=10% Similarity=0.088 Sum_probs=63.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEEEEecChhHHHHHHh
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALRE 1546 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~ 1546 (1806)
-+|.-..|.|||..+..+......... ..++.+|.-.+...-=.+.+..|...-.+.+.......
T Consensus 140 i~lvGptGvGKTTtiakLA~~~~~~~G-------~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~-------- 204 (374)
T PRK14722 140 FALMGPTGVGKTTTTAKLAARCVMRFG-------ASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGG-------- 204 (374)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcC-------CCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcc--------
Confidence 377889999999988887765432211 02455555433322222344444421122222211111
Q ss_pred hhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHhh-----hcceEEeccCCCCCChhhHHhh
Q 000237 1547 QFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLK-----AAHRLILSGTPIQNNITDLWSL 1621 (1806)
Q Consensus 1547 ~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L~-----A~~RLlLTGTPIqNnl~ELwSL 1621 (1806)
.+......+. ..++|+||++=+.-. +......+..+. ....++|++|--.+.+.+.+.-
T Consensus 205 -------------~l~~~l~~l~--~~DlVLIDTaG~~~~-d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~ 268 (374)
T PRK14722 205 -------------DLQLALAELR--NKHMVLIDTIGMSQR-DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQA 268 (374)
T ss_pred -------------cHHHHHHHhc--CCCEEEEcCCCCCcc-cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHH
Confidence 1111122222 358899999854322 222334444442 2335778999877777766544
Q ss_pred hh
Q 000237 1622 FD 1623 (1806)
Q Consensus 1622 L~ 1623 (1806)
|.
T Consensus 269 f~ 270 (374)
T PRK14722 269 YR 270 (374)
T ss_pred HH
Confidence 43
No 338
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=45.24 E-value=1.8e+02 Score=34.96 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=17.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 000237 1466 HGILCDDMGLGKTLQASAIVAS 1487 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~ 1487 (1806)
+.++.=+.|.|||..+-++...
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4688899999999888777654
No 339
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=44.87 E-value=24 Score=39.88 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=33.5
Q ss_pred hhhccccceEEEEcccccccC----hhhHHHHHHHHhhhcceEEeccCCCCCChhhHH
Q 000237 1566 DYLGQLLWNYCILDEGHIIKN----SKSKITVAVKQLKAAHRLILSGTPIQNNITDLW 1619 (1806)
Q Consensus 1566 ~~L~~i~w~~VILDEaH~IKN----~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELw 1619 (1806)
+.+..-.|++||+||.-..-+ +.......+..-....-++|||.-....+.|+.
T Consensus 91 ~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 91 EMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred HHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 455567899999999864332 233444455444455579999985544444433
No 340
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.78 E-value=2.4e+02 Score=34.14 Aligned_cols=127 Identities=11% Similarity=0.103 Sum_probs=67.0
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecc----ccHHHHHHHHHHhhccCCceEEEEecChhHHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS----TLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRI 1542 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~----SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~ 1542 (1806)
-.+.-..|.|||.....+....... . .++.+|.-. ..+.||.. |+..-.+.+. ..
T Consensus 78 i~~~G~~g~GKTtl~~~l~~~l~~~-~--------~~v~~i~~D~~ri~~~~ql~~----~~~~~~~~~~--~~------ 136 (270)
T PRK06731 78 IALIGPTGVGKTTTLAKMAWQFHGK-K--------KTVGFITTDHSRIGTVQQLQD----YVKTIGFEVI--AV------ 136 (270)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc-C--------CeEEEEecCCCCHHHHHHHHH----HhhhcCceEE--ec------
Confidence 3666779999998776665543221 1 345555542 24555653 4311122221 11
Q ss_pred HHHhhhcCCcEEEeeHHHHHhhHhhhcc-ccceEEEEcccccccChhhHHHHHHHHh----hh-cceEEeccCCCCCChh
Q 000237 1543 ALREQFDKHNVIITSYDVVRKDADYLGQ-LLWNYCILDEGHIIKNSKSKITVAVKQL----KA-AHRLILSGTPIQNNIT 1616 (1806)
Q Consensus 1543 ~l~~~l~~~dVVITSYe~Lr~di~~L~~-i~w~~VILDEaH~IKN~~Sk~skalk~L----~A-~~RLlLTGTPIqNnl~ 1616 (1806)
.+.+.+...++.+.. ..+++||+|-+=+.-+..- ....+..+ .. ..-+.|++|--.+...
T Consensus 137 -------------~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~-~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~ 202 (270)
T PRK06731 137 -------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASE-TVEEMIETMGQVEPDYICLTLSASMKSKDMI 202 (270)
T ss_pred -------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHH-HHHHHHHHHhhhCCCeEEEEEcCccCHHHHH
Confidence 122233333344433 3589999999755422222 22222222 22 2346689998888888
Q ss_pred hHHhhhhhhCCC
Q 000237 1617 DLWSLFDFLMPG 1628 (1806)
Q Consensus 1617 ELwSLL~FL~Pg 1628 (1806)
+....|+-+.+.
T Consensus 203 ~~~~~f~~~~~~ 214 (270)
T PRK06731 203 EIITNFKDIHID 214 (270)
T ss_pred HHHHHhCCCCCC
Confidence 877777765443
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=44.66 E-value=93 Score=40.12 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=18.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHhH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~ 1489 (1806)
.+++-..|.|||.++..++..+.
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 46778999999998888876544
No 342
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=44.54 E-value=91 Score=37.43 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=20.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAE 1491 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~ 1491 (1806)
-++.-..|.|||..+.++...+...
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 4777889999999999998876643
No 343
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=44.03 E-value=1.1e+02 Score=40.38 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.6
Q ss_pred EEEcCCCCchHHHHHHHHHHhH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~ 1489 (1806)
++.-+.|.|||..+-+++..+.
T Consensus 40 Lf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 40 LFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred EEECCCCCcHHHHHHHHHHHhc
Confidence 7889999999998888876654
No 344
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.59 E-value=31 Score=45.12 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=55.1
Q ss_pred CCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhhccC--CceEEEEecChhHHHHHHhhh
Q 000237 1472 DMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFIDVS--LMSTLQYVGSAQDRIALREQF 1548 (1806)
Q Consensus 1472 dMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~~~p--~l~vliy~Gs~~~R~~l~~~l 1548 (1806)
.+|.|||+++.++|..+...+. +..|..|- .+++..-...|-.-.... .-.++.|.|..-+-.+ ...+
T Consensus 5 atgsgkt~~ma~lil~~y~kgy--------r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikk-vn~f 75 (812)
T COG3421 5 ATGSGKTLVMAGLILECYKKGY--------RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKK-VNNF 75 (812)
T ss_pred ccCCChhhHHHHHHHHHHHhch--------hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeee-eccc
Confidence 5899999999999988765433 45777665 556654443322111000 0011112222111111 1111
Q ss_pred ----cCCcEEEeeHHHHHhhHhh----------hccccceEEEEccccccc
Q 000237 1549 ----DKHNVIITSYDVVRKDADY----------LGQLLWNYCILDEGHIIK 1585 (1806)
Q Consensus 1549 ----~~~dVVITSYe~Lr~di~~----------L~~i~w~~VILDEaH~IK 1585 (1806)
..-.|+.||.+.+-.+... +... --+.+-||+|++-
T Consensus 76 sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~-klvfl~deahhln 125 (812)
T COG3421 76 SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQ-KLVFLADEAHHLN 125 (812)
T ss_pred CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhC-ceEEEechhhhhh
Confidence 2235899999888766432 2211 2346789999993
No 345
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=43.49 E-value=18 Score=49.47 Aligned_cols=181 Identities=25% Similarity=0.370 Sum_probs=102.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCCceEEEcCCCCc--hHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLG--KTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFE 1519 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLG--KTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~E 1519 (1806)
....+.+||.....-.. .........+++.|+| ||..+..+......... ....++++|..+..+|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~e 151 (866)
T COG0553 81 SRFILIPHQLDIALEVL--NELALRVLIADEVGLGDLKTIEAGAILKELLLRGE-------IKRVLILVPKTLRAQWVVE 151 (866)
T ss_pred cccccCcchhhhhhhhh--hhhhhchhhcccccccccccccccccchHhhhhhh-------hccceeccchHHHHHHHHH
Confidence 34556677766653221 1122226888999999 89888777665443322 2678999999999999999
Q ss_pred HHHhhccCCceEEEEecChhHHHHH--HhhhcCCcEEEeeHHHHHhh----Hhhhccccc---eEEEEcccccccChh--
Q 000237 1520 IEKFIDVSLMSTLQYVGSAQDRIAL--REQFDKHNVIITSYDVVRKD----ADYLGQLLW---NYCILDEGHIIKNSK-- 1588 (1806)
Q Consensus 1520 i~kf~~~p~l~vliy~Gs~~~R~~l--~~~l~~~dVVITSYe~Lr~d----i~~L~~i~w---~~VILDEaH~IKN~~-- 1588 (1806)
...++..+ ..+....+........ ...+...+.++.+++..+.. ...+....| +++++||+|...+..
T Consensus 152 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (866)
T COG0553 152 LLEKFNIR-LAVLDKEGLRYLLKQYDAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGT 230 (866)
T ss_pred hhhhcccc-chhhhhhhhhhhhhhhcccccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhccccccc
Confidence 88774211 1111111111110000 00000011145555555443 123334446 899999999987742
Q ss_pred -------hHHHHHHHHhhhc--------ceEEeccCCCCCChhhHHhhhhhhCCCCCCc
Q 000237 1589 -------SKITVAVKQLKAA--------HRLILSGTPIQNNITDLWSLFDFLMPGFLGT 1632 (1806)
Q Consensus 1589 -------Sk~skalk~L~A~--------~RLlLTGTPIqNnl~ELwSLL~FL~Pg~Lgt 1632 (1806)
+..+...+..... ....+++||.+....+++....++.|..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 231 RKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred ccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 3344444444211 2347899999998888887777777766655
No 346
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=43.26 E-value=2e+02 Score=33.21 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=17.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q 000237 1465 LHGILCDDMGLGKTLQASAIVAS 1487 (1806)
Q Consensus 1465 ~gGILADdMGLGKTlqaIalia~ 1487 (1806)
..-+|.-+.|.|||..+.++...
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34588999999999887766554
No 347
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.71 E-value=2.1e+02 Score=36.95 Aligned_cols=126 Identities=12% Similarity=0.129 Sum_probs=68.1
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc--cHHHHHHHHHHhhccCCceEEEEecChhHHHHHH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST--LVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALR 1545 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S--Ll~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~ 1545 (1806)
++.=..|.|||.++.-++........ .++.++.=.. ....| .+..|+....+.+.
T Consensus 227 ~lvGptGvGKTTtaaKLA~~~~~~~G--------~~V~Lit~Dt~R~aA~e--QLk~yAe~lgvp~~------------- 283 (432)
T PRK12724 227 FFVGPTGSGKTTSIAKLAAKYFLHMG--------KSVSLYTTDNYRIAAIE--QLKRYADTMGMPFY------------- 283 (432)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcC--------CeEEEecccchhhhHHH--HHHHHHHhcCCCee-------------
Confidence 46679999999998888764422111 2344444222 22344 44555422222211
Q ss_pred hhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHh-h-------hcceEEeccCCCCCChhh
Q 000237 1546 EQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-K-------AAHRLILSGTPIQNNITD 1617 (1806)
Q Consensus 1546 ~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L-~-------A~~RLlLTGTPIqNnl~E 1617 (1806)
....+....+.+....+++||+|=+-+.-+.. .....+..+ . ....+.|++|-=+++..+
T Consensus 284 -----------~~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~ 351 (432)
T PRK12724 284 -----------PVKDIKKFKETLARDGSELILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT 351 (432)
T ss_pred -----------ehHHHHHHHHHHHhCCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH
Confidence 11111222233334578999999765542222 233333332 1 134578999998888888
Q ss_pred HHhhhhhhCCC
Q 000237 1618 LWSLFDFLMPG 1628 (1806)
Q Consensus 1618 LwSLL~FL~Pg 1628 (1806)
....|..+.+.
T Consensus 352 ~~~~f~~~~~~ 362 (432)
T PRK12724 352 VLKAYESLNYR 362 (432)
T ss_pred HHHHhcCCCCC
Confidence 88877777654
No 348
>PRK06921 hypothetical protein; Provisional
Probab=42.70 E-value=1.6e+02 Score=35.47 Aligned_cols=26 Identities=23% Similarity=0.075 Sum_probs=20.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1465 LHGILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1465 ~gGILADdMGLGKTlqaIalia~l~~ 1490 (1806)
.+-+|.=+.|.|||..+.|++..+..
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 34588889999999999888766543
No 349
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=42.37 E-value=44 Score=39.45 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhH
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~ 1489 (1806)
+-|++-.+|.|||..+.|+...+.
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHh
Confidence 569999999999999988876544
No 350
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=42.14 E-value=59 Score=33.28 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=14.8
Q ss_pred EEEcCCCCchHHHHHHHHHH
Q 000237 1468 ILCDDMGLGKTLQASAIVAS 1487 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~ 1487 (1806)
+|-=.+|.|||..+-.++..
T Consensus 2 ll~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHH
T ss_pred EEECcCCCCeeHHHHHHHhh
Confidence 34558999999887776654
No 351
>PF13245 AAA_19: Part of AAA domain
Probab=42.00 E-value=58 Score=31.77 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=30.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV 1513 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl 1513 (1806)
.++--.+|.|||.+.+..+..+...+.. . ..++||++|..-.
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~----~-~~~vlv~a~t~~a 54 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARAD----P-GKRVLVLAPTRAA 54 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcC----C-CCeEEEECCCHHH
Confidence 4557899999999999988877643211 1 2689999996543
No 352
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=41.67 E-value=70 Score=44.21 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=42.9
Q ss_pred hcCCcEEEeeHHHHHhhH--hhhccccceEEEEcccccccChhhHHHHHHHHh----hhcceEEeccCCCC
Q 000237 1548 FDKHNVIITSYDVVRKDA--DYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL----KAAHRLILSGTPIQ 1612 (1806)
Q Consensus 1548 l~~~dVVITSYe~Lr~di--~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L----~A~~RLlLTGTPIq 1612 (1806)
+...+|+++|-.++.+|+ ..+.--....+|+||||++... +.-+-.++.+ +..+..++|+.|-.
T Consensus 5 y~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~-~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIES-SQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeeccccccc-ccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 456789999999999875 2222334789999999999543 3333333444 34456789998865
No 353
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=41.20 E-value=40 Score=41.42 Aligned_cols=88 Identities=20% Similarity=0.371 Sum_probs=62.1
Q ss_pred hhcccccccccccccchhhHHHHHHHHHHHHHhccccccccCCCCCCCchhchhhHHHHHHHHHhc------c-chHHHH
Q 000237 705 LSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLL------E-SNEEIL 777 (1806)
Q Consensus 705 l~~LvPRL~PFlrHsitsVR~a~l~tL~~ll~~~~~~~~~~~~~~~~W~~~i~~~~LR~vFQnlLl------E-~~~~I~ 777 (1806)
+....|-|+|||.|+-.+||-.-|+-++.++- + ++..||-.++-+|+ | ++.|+.
T Consensus 95 l~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~l-p------------------L~~~L~p~l~~li~slLpGLede~sE~~ 155 (307)
T PF04118_consen 95 LPIYSPGLFPLFSYASIQVKPQLLDIYEKYYL-P------------------LGPALRPCLKGLILSLLPGLEDEGSEFF 155 (307)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-C------------------ccHHHHHHHHHHHHHhccccccCCchHH
Confidence 67788999999999999999999998888763 1 23477777777763 4 788888
Q ss_pred HHHHHHHHHHhcCChhhHHHhhhhhHHHHHHHhhcCCCC
Q 000237 778 QCSDRVWRLLVQSPVEDLEAAGGKFMSSWIELATTPFGS 816 (1806)
Q Consensus 778 ~~s~~vW~~ll~~~~~~~~~~~~~~~~~wl~L~mtP~g~ 816 (1806)
+-..++-..+=...... .-|-.-|++++++|...
T Consensus 156 ~~~~~ll~~l~~~v~~~-----~F~~~lwl~ii~sp~~R 189 (307)
T PF04118_consen 156 DRTLKLLDKLKEAVGDK-----YFWQCLWLCIITSPSRR 189 (307)
T ss_pred HHHHHHHHHHHHhcChh-----HHHHHHHHHHhcCcchh
Confidence 87777755444321111 22333499999887544
No 354
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=41.15 E-value=1.1e+02 Score=39.48 Aligned_cols=23 Identities=30% Similarity=0.105 Sum_probs=18.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHhH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~ 1489 (1806)
-+|.-+.|+|||.-+-++...+.
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 47888999999998877776543
No 355
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.92 E-value=96 Score=38.61 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=71.8
Q ss_pred cCCChhHHHHHHHHHHHhhccCChhhhHHHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHH---HHH-HHHHHhh
Q 000237 1256 SVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTIN---VMA-AVVENAI 1331 (1806)
Q Consensus 1256 ~~~~~q~lid~l~vl~~~~p~~~~~l~~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~---~~~-~~~~~~~ 1331 (1806)
.....++.+++|..|+.++-.+|-+.-=.=+..++.++..|.+..+-+|-.||+.|++....-|-- +|. ..+++++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 445688999999999999999987765333444566666999999999999999999998753321 111 0233444
Q ss_pred cccCCccchhhccchhHHHHHHHhhc
Q 000237 1332 PMLGDMTSVHARQGAGMLISLLVQGL 1357 (1806)
Q Consensus 1332 p~l~~~~~~~~r~ga~~~~~~~~~~~ 1357 (1806)
-.+....+.+.|.-|.=+|+.++...
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~ 198 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNN 198 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcC
Confidence 45555556677777777777777643
No 356
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=40.89 E-value=2.9e+02 Score=34.25 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=29.7
Q ss_pred ccccceEEEEcccccccChhhHHHH--HHHH-h-------hhcceEEeccCCCCCChhhHHh
Q 000237 1569 GQLLWNYCILDEGHIIKNSKSKITV--AVKQ-L-------KAAHRLILSGTPIQNNITDLWS 1620 (1806)
Q Consensus 1569 ~~i~w~~VILDEaH~IKN~~Sk~sk--alk~-L-------~A~~RLlLTGTPIqNnl~ELwS 1620 (1806)
....+++||+|=+-+.-+....... .+.. + .....+.+++|--+|.+.....
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~ 254 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA 254 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH
Confidence 3466899999998877554442221 1111 1 1123477899866666655433
No 357
>CHL00095 clpC Clp protease ATP binding subunit
Probab=40.86 E-value=95 Score=43.13 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=19.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHh
Q 000237 1464 KLHGILCDDMGLGKTLQASAIVASD 1488 (1806)
Q Consensus 1464 ~~gGILADdMGLGKTlqaIalia~l 1488 (1806)
..+-||.-+.|.|||..+-++....
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3466999999999999887776543
No 358
>PRK11054 helD DNA helicase IV; Provisional
Probab=40.79 E-value=59 Score=44.18 Aligned_cols=71 Identities=17% Similarity=0.033 Sum_probs=47.9
Q ss_pred cccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHH-HHH
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFE-IEK 1522 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~E-i~k 1522 (1806)
..|-+.|+++|.. ..++.++--..|.|||.+.++-++++...... ....+|+++...-..++..| +.+
T Consensus 195 ~~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~-----~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQA-----QPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC-----CHHHeEEEeccHHHHHHHHHHHHH
Confidence 4688999999952 22344666679999999999998887753221 12578888886655554443 555
Q ss_pred hhc
Q 000237 1523 FID 1525 (1806)
Q Consensus 1523 f~~ 1525 (1806)
.++
T Consensus 264 ~lg 266 (684)
T PRK11054 264 RLG 266 (684)
T ss_pred hcC
Confidence 553
No 359
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=40.65 E-value=1.1e+02 Score=36.77 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=29.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecccc------HHHHHHHHHH
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTL------VGHWAFEIEK 1522 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SL------l~qW~~Ei~k 1522 (1806)
-+.++-+.|.|||+..=++.++.-. -.-+.|+.|+.. ..-|..++..
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~----------d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNE----------DQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCC----------CceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 4678899999999988755444221 133456777543 3557666654
No 360
>PTZ00293 thymidine kinase; Provisional
Probab=40.61 E-value=67 Score=37.52 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=24.0
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST 1511 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S 1511 (1806)
++.-.||.|||...|-.+......+ .+++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~ag---------~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYSE---------KKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcC---------CceEEEEecc
Confidence 5677999999987776654332211 5788888854
No 361
>PRK11823 DNA repair protein RadA; Provisional
Probab=40.59 E-value=1.3e+02 Score=39.00 Aligned_cols=87 Identities=11% Similarity=0.115 Sum_probs=50.9
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEEEEecChhHHHHHHhh
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQ 1547 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~ 1547 (1806)
++.=++|.|||..++.++...... ..++|.|.-..-..+......++. ...-++.++ ..
T Consensus 84 lI~G~pG~GKTtL~lq~a~~~a~~---------g~~vlYvs~Ees~~qi~~ra~rlg-~~~~~l~~~-~e---------- 142 (446)
T PRK11823 84 LIGGDPGIGKSTLLLQVAARLAAA---------GGKVLYVSGEESASQIKLRAERLG-LPSDNLYLL-AE---------- 142 (446)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc---------CCeEEEEEccccHHHHHHHHHHcC-CChhcEEEe-CC----------
Confidence 788999999999988887654321 157788876555556655555442 111111111 00
Q ss_pred hcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccC
Q 000237 1548 FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1548 l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN 1586 (1806)
++.+.+ .+.+.....++||+|+.+.+..
T Consensus 143 --------~~l~~i---~~~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 143 --------TNLEAI---LATIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred --------CCHHHH---HHHHHhhCCCEEEEechhhhcc
Confidence 112222 2334456789999999997643
No 362
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=40.49 E-value=1.1e+02 Score=39.63 Aligned_cols=41 Identities=24% Similarity=0.210 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcCC--ce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1450 QQEGINWLAFLKRFKL--HG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~~--gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|...+.+|....+.+. +. |+.=+.|.|||..+.+++..+..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 5556666655444432 44 67889999999999888876543
No 363
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=40.43 E-value=2.5e+02 Score=30.88 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=17.4
Q ss_pred EEEcCCCCchHHHHHHHHHHhH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~ 1489 (1806)
++.-..|.|||..+..++..+.
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 5667899999999888876544
No 364
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=40.28 E-value=84 Score=40.14 Aligned_cols=53 Identities=13% Similarity=0.264 Sum_probs=34.1
Q ss_pred cceEEEEcccccccChhhHHH---HHHHHhh-hcceEEecc--CCCCCC--hhhHHhhhhh
Q 000237 1572 LWNYCILDEGHIIKNSKSKIT---VAVKQLK-AAHRLILSG--TPIQNN--ITDLWSLFDF 1624 (1806)
Q Consensus 1572 ~w~~VILDEaH~IKN~~Sk~s---kalk~L~-A~~RLlLTG--TPIqNn--l~ELwSLL~F 1624 (1806)
.-+++++|-.|.+.+...... .....+. ....+++|+ +|-+-+ ..+|.|=|.+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~ 235 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW 235 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc
Confidence 568899999999977643333 3333443 344899999 775544 3467666654
No 365
>PRK08760 replicative DNA helicase; Provisional
Probab=40.10 E-value=2.4e+02 Score=36.89 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=64.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEE-EEecC--hhHHHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTL-QYVGS--AQDRIA 1543 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vl-iy~Gs--~~~R~~ 1543 (1806)
.|++-.+|.|||.-++.++........ .+++++..---..+|...+..... .+... +..|. ..+...
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g--------~~V~~fSlEMs~~ql~~Rl~a~~s--~i~~~~i~~g~l~~~e~~~ 301 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSK--------KGVAVFSMEMSASQLAMRLISSNG--RINAQRLRTGALEDEDWAR 301 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcC--------CceEEEeccCCHHHHHHHHHHhhC--CCcHHHHhcCCCCHHHHHH
Confidence 399999999999999888865432211 578999887777888887665531 11110 11221 112211
Q ss_pred H---HhhhcCCcEEEee-----HHHHHhhHhhh-ccccceEEEEcccccccC
Q 000237 1544 L---REQFDKHNVIITS-----YDVVRKDADYL-GQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1544 l---~~~l~~~dVVITS-----Ye~Lr~di~~L-~~i~w~~VILDEaH~IKN 1586 (1806)
+ ...+.+..+.|.. -+.++..+..+ .....++||+|=-|.++.
T Consensus 302 ~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~ 353 (476)
T PRK08760 302 VTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSV 353 (476)
T ss_pred HHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCC
Confidence 1 2233445555542 34454444333 234578999998888863
No 366
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=40.06 E-value=1.4e+02 Score=36.77 Aligned_cols=130 Identities=16% Similarity=0.115 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhh
Q 000237 1448 RYQQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI 1524 (1806)
Q Consensus 1448 pYQ~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~ 1524 (1806)
-.|...+..+......+ .|. ++.-+.|.|||..+..++..+...... ....|+ .|+ .. ..+...
T Consensus 9 ~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~--~~~~cg----~C~-----~c-~~~~~~- 75 (329)
T PRK08058 9 ALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERN--GVEPCG----TCT-----NC-KRIDSG- 75 (329)
T ss_pred hhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCC----cCH-----HH-HHHhcC-
Confidence 34666666665554433 345 888999999999998887765432110 001111 111 11 111111
Q ss_pred ccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhc----cccceEEEEcccccccChhhHHHHHHHHh--
Q 000237 1525 DVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLG----QLLWNYCILDEGHIIKNSKSKITVAVKQL-- 1598 (1806)
Q Consensus 1525 ~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~----~i~w~~VILDEaH~IKN~~Sk~skalk~L-- 1598 (1806)
..|++..+...|.. .+.+.+|...+.+. .-.+.++|+||+|++.. ......++-|
T Consensus 76 ~hpD~~~i~~~~~~-----------------i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~--~a~NaLLK~LEE 136 (329)
T PRK08058 76 NHPDVHLVAPDGQS-----------------IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA--SAANSLLKFLEE 136 (329)
T ss_pred CCCCEEEecccccc-----------------CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH--HHHHHHHHHhcC
Confidence 12454444333221 23455665555443 22478999999999842 2223334444
Q ss_pred -hhcceEEeccC
Q 000237 1599 -KAAHRLILSGT 1609 (1806)
Q Consensus 1599 -~A~~RLlLTGT 1609 (1806)
.....++|+.+
T Consensus 137 Pp~~~~~Il~t~ 148 (329)
T PRK08058 137 PSGGTTAILLTE 148 (329)
T ss_pred CCCCceEEEEeC
Confidence 35556777665
No 367
>PRK12377 putative replication protein; Provisional
Probab=39.79 E-value=2.6e+02 Score=33.39 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=20.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~~ 1490 (1806)
+-+|.-+.|.|||..+.|+...+..
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~ 127 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLA 127 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3478889999999999998876653
No 368
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=39.67 E-value=1.2e+02 Score=43.29 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=71.2
Q ss_pred hhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccH-----HHHHHHHHHhhccCCceEEEEe
Q 000237 1461 KRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLV-----GHWAFEIEKFIDVSLMSTLQYV 1535 (1806)
Q Consensus 1461 ~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl-----~qW~~Ei~kf~~~p~l~vliy~ 1535 (1806)
++.+.+.++|...|.|||..+=-.+.. + ...++..-|.|...+ .-|...|.+-. .+.+....
T Consensus 1156 y~~nd~v~vga~~gsgkt~~ae~a~l~-----~-----~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~---G~~~~~l~ 1222 (1674)
T KOG0951|consen 1156 YNTNDNVLVGAPNGSGKTACAELALLR-----P-----DTIGRAVYIAPLEEIADEQYRDWEKKFSKLL---GLRIVKLT 1222 (1674)
T ss_pred ecccceEEEecCCCCchhHHHHHHhcC-----C-----ccceEEEEecchHHHHHHHHHHHHHhhcccc---CceEEecC
Confidence 345567899999999999876333321 1 223678889997654 45777776663 45566666
Q ss_pred cChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccC
Q 000237 1536 GSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1536 Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN 1586 (1806)
|...--. ..+...+|+|.|.+.+.... .-..-++.|.||.|.|..
T Consensus 1223 ge~s~~l---kl~~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg 1267 (1674)
T KOG0951|consen 1223 GETSLDL---KLLQKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGG 1267 (1674)
T ss_pred Cccccch---HHhhhcceEEechhHHHHHh---hhhhcceEeeehhhhhcc
Confidence 6553322 23456789999988776542 223467899999999975
No 369
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=39.65 E-value=98 Score=42.63 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=19.3
Q ss_pred cCCceEEEcCCCCchHHHHHHHHHH
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVAS 1487 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia~ 1487 (1806)
...+-+|.=+.|.|||..+-++...
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3446699999999999987776543
No 370
>PRK06893 DNA replication initiation factor; Validated
Probab=39.54 E-value=1.1e+02 Score=35.61 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=17.4
Q ss_pred EEEcCCCCchHHHHHHHHHHh
Q 000237 1468 ILCDDMGLGKTLQASAIVASD 1488 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l 1488 (1806)
+|.-..|.|||.-+.++....
T Consensus 43 ~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 788999999998887776553
No 371
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=38.96 E-value=1.9e+02 Score=39.02 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=24.1
Q ss_pred ceEEEEcccccccChhhH---HHHHHHHhh-hcceEEeccCC
Q 000237 1573 WNYCILDEGHIIKNSKSK---ITVAVKQLK-AAHRLILSGTP 1610 (1806)
Q Consensus 1573 w~~VILDEaH~IKN~~Sk---~skalk~L~-A~~RLlLTGTP 1610 (1806)
.+++|||+.|.+.+.... ++..+..+. ....+++|+.-
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 588999999999765433 333343443 34557777753
No 372
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.68 E-value=1.7e+02 Score=37.17 Aligned_cols=21 Identities=38% Similarity=0.335 Sum_probs=16.6
Q ss_pred ceEEEcCCCCchHHHHHHHHH
Q 000237 1466 HGILCDDMGLGKTLQASAIVA 1486 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia 1486 (1806)
+-+|.=+.|.|||..+-++..
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 458888999999987766643
No 373
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=37.59 E-value=7.2e+02 Score=32.05 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=21.1
Q ss_pred HHHHHhhHhhhccccceEEE---EcccccccChhh
Q 000237 1558 YDVVRKDADYLGQLLWNYCI---LDEGHIIKNSKS 1589 (1806)
Q Consensus 1558 Ye~Lr~di~~L~~i~w~~VI---LDEaH~IKN~~S 1589 (1806)
|+.+..-++.|+.++++-|| +||.-.+.|--+
T Consensus 325 ~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~~~s 359 (407)
T COG1419 325 YEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNLFS 359 (407)
T ss_pred hHHHHHHHHHhccCCcceeEEEcccccCchhHHHH
Confidence 45555556677777777777 688877755433
No 374
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=37.40 E-value=64 Score=44.14 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=79.7
Q ss_pred hcccHHHHHHHHHHHhccchhhhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHHHHHHHHHhhccCChhhhHH
Q 000237 1205 SRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPK 1284 (1806)
Q Consensus 1205 ~RrGA~~al~~l~~~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid~l~vl~~~~p~~~~~l~~~ 1284 (1806)
-|++|..-|++..++|+..+||.- ..|.. .++.....
T Consensus 54 lRQ~A~v~L~~yie~hW~~~~E~f-------r~~~~------------------------------------~~e~~K~~ 90 (1005)
T KOG2274|consen 54 LRQIALVLLKRYIEKHWSPNFEAF-------RYPLI------------------------------------VSEEVKAL 90 (1005)
T ss_pred HHHHHHHHHHHHHHHhCCChHhhc-------cCCCc------------------------------------ccHHHHHH
Confidence 478888888888888888887643 11110 12223333
Q ss_pred HHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCccchhhccchhHHHHHHHhhcCC
Q 000237 1285 LLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGA 1359 (1806)
Q Consensus 1285 ~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~ 1359 (1806)
|.+.||..+. -+++-+|.++|-|+.+|+.+.=-+..+-++..++.++.. ++...--||.+++..+...+..
T Consensus 91 IRe~Ll~~l~---~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~-~n~n~i~~am~vL~el~~ev~~ 161 (1005)
T KOG2274|consen 91 IREQLLNLLD---DSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS-GNENSIHGAMRVLAELSDEVDV 161 (1005)
T ss_pred HHHHHHhhhh---ccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc-cchhhhhhHHHHHHHHHHHHHH
Confidence 4444444433 688999999999999999999989999999999999987 5666778999999988877643
No 375
>PRK06904 replicative DNA helicase; Validated
Probab=37.24 E-value=3.5e+02 Score=35.32 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=63.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhh-ccCCceEEEEec---ChhHHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI-DVSLMSTLQYVG---SAQDRI 1542 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~-~~p~l~vliy~G---s~~~R~ 1542 (1806)
.|+|--+|.|||.-++.++....... ..|++++..---..++...+-... +.+.-+ + ..| +..+..
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~--------g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~-i-~~g~~l~~~e~~ 293 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMAS--------EKPVLVFSLEMPAEQIMMRMLASLSRVDQTK-I-RTGQNLDQQDWA 293 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhc--------CCeEEEEeccCCHHHHHHHHHHhhCCCCHHH-h-ccCCCCCHHHHH
Confidence 49999999999998877765433211 158999988777777777655443 111111 1 122 122222
Q ss_pred HHH---hhhc-CCcEEEe-----eHHHHHhhHhhhcc-c-cceEEEEcccccccCh
Q 000237 1543 ALR---EQFD-KHNVIIT-----SYDVVRKDADYLGQ-L-LWNYCILDEGHIIKNS 1587 (1806)
Q Consensus 1543 ~l~---~~l~-~~dVVIT-----SYe~Lr~di~~L~~-i-~w~~VILDEaH~IKN~ 1587 (1806)
++. ..+. ..++.|. |.+.++..+..+.. . ..++||+|=-|.++.+
T Consensus 294 ~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 294 KISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC
Confidence 222 1232 2346663 45566655544332 2 4789999998888643
No 376
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=37.18 E-value=3.2e+02 Score=37.29 Aligned_cols=144 Identities=10% Similarity=0.048 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHhhcc----
Q 000237 1452 EGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKFIDV---- 1526 (1806)
Q Consensus 1452 eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf~~~---- 1526 (1806)
+-|+-+...+++....+. -+=|-|||..+..++..+..... ..++|.+|.. ....-.+++++++..
T Consensus 176 ~~id~~~~~fkq~~tV~t-aPRqrGKS~iVgi~l~~La~f~G--------i~IlvTAH~~~ts~evF~rv~~~le~lg~~ 246 (752)
T PHA03333 176 REIDRIFDEYGKCYTAAT-VPRRCGKTTIMAIILAAMISFLE--------IDIVVQAQRKTMCLTLYNRVETVVHAYQHK 246 (752)
T ss_pred HHHHHHHHHHhhcceEEE-eccCCCcHHHHHHHHHHHHHhcC--------CeEEEECCChhhHHHHHHHHHHHHHHhccc
Confidence 335555555555444444 47899999988766655443111 4688999933 444444444444420
Q ss_pred ---CCc-eEEEEecChhH-HHHHHh--hhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHhh
Q 000237 1527 ---SLM-STLQYVGSAQD-RIALRE--QFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLK 1599 (1806)
Q Consensus 1527 ---p~l-~vliy~Gs~~~-R~~l~~--~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L~ 1599 (1806)
+.. ++....|.... +..... ..+...+... .+..+..+...++++|+|||+.|.. ......+--+.
T Consensus 247 ~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~-----Ars~~s~RG~~~DLLIVDEAAfI~~--~~l~aIlP~l~ 319 (752)
T PHA03333 247 PWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFL-----ASSPNAARGQNPDLVIVDEAAFVNP--GALLSVLPLMA 319 (752)
T ss_pred cccCCCceEEEeeCCeeEEEEecCcccccCcceeEEe-----cccCCCcCCCCCCEEEEECcccCCH--HHHHHHHHHHc
Confidence 111 12222221100 000000 0000111111 1112345556789999999999965 22222222222
Q ss_pred -hcceEEeccCCC
Q 000237 1600 -AAHRLILSGTPI 1611 (1806)
Q Consensus 1600 -A~~RLlLTGTPI 1611 (1806)
...++++..+|.
T Consensus 320 ~~~~k~IiISS~~ 332 (752)
T PHA03333 320 VKGTKQIHISSPV 332 (752)
T ss_pred cCCCceEEEeCCC
Confidence 466777777775
No 377
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=36.90 E-value=1.2e+02 Score=38.68 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=63.7
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEEEEecChhHHHHHHhh
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQ 1547 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~ 1547 (1806)
+++-|+|.||+..-+-+++.+... +++|.|+=.--..||+-..++..-
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~~----------~~vLYVsGEES~~QiklRA~RL~~---------------------- 144 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAKR----------GKVLYVSGEESLQQIKLRADRLGL---------------------- 144 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHhc----------CcEEEEeCCcCHHHHHHHHHHhCC----------------------
Confidence 788999999997665555543321 478888888888888888777630
Q ss_pred hcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChh
Q 000237 1548 FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSK 1588 (1806)
Q Consensus 1548 l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~ 1588 (1806)
...++.+..+..+......+.+.+++++|+|=.|.+-++.
T Consensus 145 -~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 145 -PTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEE 184 (456)
T ss_pred -CccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeeccc
Confidence 1235666666666666677778899999999999886543
No 378
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=36.67 E-value=45 Score=44.69 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=53.5
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhhcc--CCceEEEEecChhHHHHH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFIDV--SLMSTLQYVGSAQDRIAL 1544 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~~~--p~l~vliy~Gs~~~R~~l 1544 (1806)
+.+-.==-|||..+..+++........ ..+++++| ......-.+|+..++.. +.-.+....|.. +
T Consensus 258 VflVPRR~GKTwivv~iI~~ll~s~~G-------i~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-----I 325 (738)
T PHA03368 258 VFLVPRRHGKTWFLVPLIALALATFRG-------IKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-----I 325 (738)
T ss_pred EEEecccCCchhhHHHHHHHHHHhCCC-------CEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-----E
Confidence 333444579999887666655432211 57888998 44555555665554320 111121122210 0
Q ss_pred HhhhcC---CcEEEeeHHHHHhhHhhhccccceEEEEcccccccC
Q 000237 1545 REQFDK---HNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1545 ~~~l~~---~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN 1586 (1806)
.-.+.. ..+.+.| .+ .-..++...|+++|+||||.|+.
T Consensus 326 ~i~f~nG~kstI~FaS---ar-ntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 326 SFSFPDGSRSTIVFAS---SH-NTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred EEEecCCCccEEEEEe---cc-CCCCccCCcccEEEEechhhCCH
Confidence 001111 1222221 12 22346777899999999999964
No 379
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=36.25 E-value=2.9e+02 Score=35.74 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=18.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHhH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~ 1489 (1806)
-+++--.|.|||.++.-++..+.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 37888999999999888877643
No 380
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=35.91 E-value=1.8e+02 Score=34.25 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=59.2
Q ss_pred CCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEe--ccccHHHHHHHHHHhhccCCceEEEEecChhHHHHHHhhhcCC
Q 000237 1474 GLGKTLQASAIVASDIAERRASNSIEEIHPSLIIC--PSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKH 1551 (1806)
Q Consensus 1474 GLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVc--P~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~ 1551 (1806)
|.|||..++.+...+...+ .+++||= |..-...|......-...+.. ...+.
T Consensus 12 GvGKTT~a~nLA~~la~~G---------~~VlliD~DpQ~s~~~w~~~~~~~~~~~~~-~~~~~---------------- 65 (231)
T PRK13849 12 GAGKTTALMGLCAALASDG---------KRVALFEADENRPLTRWKENALRSNTWDPA-CEVYA---------------- 65 (231)
T ss_pred CccHHHHHHHHHHHHHhCC---------CcEEEEeCCCCCCHHHHHHhhccccCCCcc-ceecC----------------
Confidence 7899999988887755421 3566553 455567786533211000000 00000
Q ss_pred cEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHh-hhcceEEeccCCCCCChhhHHhhhhhh
Q 000237 1552 NVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-KAAHRLILSGTPIQNNITDLWSLFDFL 1625 (1806)
Q Consensus 1552 dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L-~A~~RLlLTGTPIqNnl~ELwSLL~FL 1625 (1806)
......++...+.+..-.|+|||+|=.-.. +... ...+ .+++.+ +|++-+..++++...++
T Consensus 66 ---~~~~~~l~~~l~~~~~~~yD~iiID~pp~~----~~~~--~~al~~aD~vl----iP~~ps~~d~~~~~~~~ 127 (231)
T PRK13849 66 ---ADELPLLEAAYEDAELQGFDYALADTHGGS----SELN--NTIIASSNLLL----IPTMLTPLDIDEALSTY 127 (231)
T ss_pred ---CCHHHHHHHHHHHHhhCCCCEEEEeCCCCc----cHHH--HHHHHHCCEEE----EeccCcHHHHHHHHHHH
Confidence 011223444334443346999999965543 1221 2223 345544 57777888887776664
No 381
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=35.64 E-value=1.5e+02 Score=38.41 Aligned_cols=87 Identities=9% Similarity=0.121 Sum_probs=51.6
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEEEEecChhHHHHHHhh
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQ 1547 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~ 1547 (1806)
+++=++|.|||..++.++...... ..++|.|....-..|......++. ...-+..++.
T Consensus 98 lI~G~pGsGKTTL~lq~a~~~a~~---------g~kvlYvs~EEs~~qi~~ra~rlg-~~~~~l~~~~------------ 155 (454)
T TIGR00416 98 LIGGDPGIGKSTLLLQVACQLAKN---------QMKVLYVSGEESLQQIKMRAIRLG-LPEPNLYVLS------------ 155 (454)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhc---------CCcEEEEECcCCHHHHHHHHHHcC-CChHHeEEcC------------
Confidence 888999999999888877654321 147888887655666665555542 1100111110
Q ss_pred hcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccC
Q 000237 1548 FDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1548 l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN 1586 (1806)
. ++.+.+. ..+.....+++|+|..+.+..
T Consensus 156 --e-----~~~~~I~---~~i~~~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 156 --E-----TNWEQIC---ANIEEENPQACVIDSIQTLYS 184 (454)
T ss_pred --C-----CCHHHHH---HHHHhcCCcEEEEecchhhcc
Confidence 0 1223333 334456789999999987753
No 382
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=35.36 E-value=1.4e+02 Score=40.32 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=47.9
Q ss_pred cchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhh
Q 000237 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFI 1524 (1806)
Q Consensus 1446 LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~ 1524 (1806)
|-|-|+++|.+ ..++.++---.|.|||.+.+.-+..+...... ....+|+|+. ......-++.+.+.+
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-----~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-----KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-----CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889998853 34566777799999999999988887653211 1145666665 556677777777766
Q ss_pred c
Q 000237 1525 D 1525 (1806)
Q Consensus 1525 ~ 1525 (1806)
+
T Consensus 71 ~ 71 (664)
T TIGR01074 71 G 71 (664)
T ss_pred C
Confidence 3
No 383
>COG2901 Fis Factor for inversion stimulation Fis, transcriptional activator [Transcription / DNA replication, recombination, and repair]
Probab=35.34 E-value=26 Score=35.28 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=31.8
Q ss_pred CCCccc-cchhhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 000237 521 VSDQVV-APVRETCAQALGAAFKYMHPSLVYETLYILL 557 (1806)
Q Consensus 521 VSDqVV-APVRET~AQ~Lgall~~m~~~~v~~~~~iLl 557 (1806)
+.|++- -|+||+++|+|---|.+++..-|..+++..|
T Consensus 18 t~~~~~~~plRdsV~~~L~~Y~~~L~G~~v~~lY~mVL 55 (98)
T COG2901 18 SQDQITQKPLRDSVKQALKNYFADLNGQDVNDLYEMVL 55 (98)
T ss_pred cCCccccccHHHHHHHHHHHHHHHcCCCChhhHHHHHH
Confidence 356666 8999999999999999999999888887653
No 384
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=35.33 E-value=1.9e+02 Score=38.88 Aligned_cols=40 Identities=23% Similarity=0.092 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhH
Q 000237 1450 QQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~ 1489 (1806)
|...++.|......+ .|+ ++.-..|.|||..+.++...+.
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444444333332 244 6788999999999988887654
No 385
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=35.03 E-value=1.1e+02 Score=35.00 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=34.8
Q ss_pred hhhccccceEEEEcccccccC----hhhHHHHHHHHhhhcceEEeccCCCCCChhhHHhhhhh
Q 000237 1566 DYLGQLLWNYCILDEGHIIKN----SKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDF 1624 (1806)
Q Consensus 1566 ~~L~~i~w~~VILDEaH~IKN----~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~F 1624 (1806)
+.+..-.|+++|+||.-..-+ +.......+..-....-++|||- |-+.+|..+.+.
T Consensus 109 ~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR---~~p~~Lie~AD~ 168 (178)
T PRK07414 109 AVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGP---EMPESLLAIADQ 168 (178)
T ss_pred HHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECC---CCCHHHHHhCCe
Confidence 455567899999999765433 33334444444455557999997 444555544443
No 386
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=34.81 E-value=1.1e+02 Score=42.77 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=23.9
Q ss_pred HHHHHHHHh--hcCCceEEEcCCCCchHHHHHHHHHH
Q 000237 1453 GINWLAFLK--RFKLHGILCDDMGLGKTLQASAIVAS 1487 (1806)
Q Consensus 1453 GV~wL~~l~--~~~~gGILADdMGLGKTlqaIalia~ 1487 (1806)
-++.+.... +...+.+|.=+.|.|||..+-+++..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 365555422 23345688889999999988776654
No 387
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.31 E-value=1.5e+02 Score=36.44 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=95.2
Q ss_pred cCCChhHHHHHHHHHHHhhccCChhhhHHHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccC
Q 000237 1256 SVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLG 1335 (1806)
Q Consensus 1256 ~~~~~q~lid~l~vl~~~~p~~~~~l~~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~ 1335 (1806)
+..+-...||+|-.+|.+.-+=.+.+++.+.+....+.+.++++.+.|=.+|.-|+++|...........+=..+.-++.
T Consensus 98 ~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ 177 (334)
T KOG2933|consen 98 SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLH 177 (334)
T ss_pred chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455678999999999888877889999999999999999999999999999999999987766655544333444444
Q ss_pred Cc--cchhhccchhHHHHHHHhhcCCcccCCcchhhhhhhhccccCCchhhhhhhhhhhhccccc
Q 000237 1336 DM--TSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVPLL 1398 (1806)
Q Consensus 1336 ~~--~~~~~r~ga~~~~~~~~~~~~~~~~py~~~l~~pll~~msd~~~~vr~~~~~~fa~lv~l~ 1398 (1806)
.+ .+...|..|-.++...| ...-|-..+ .-+.-......+.+|..+..+|...++-+
T Consensus 178 ka~~dnrFvreda~kAL~aMV----~~vtp~~~L--~~L~~~~~~~n~r~r~~a~~~~~~~v~rl 236 (334)
T KOG2933|consen 178 KASQDNRFVREDAEKALVAMV----NHVTPQKLL--RKLIPILQHSNPRVRAKAALCFSRCVIRL 236 (334)
T ss_pred hhcccchHHHHHHHHHHHHHH----hccChHHHH--HHHHHHHhhhchhhhhhhhccccccceec
Confidence 32 23344555655554433 333343322 11223355667788988899998887765
No 388
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=34.15 E-value=4.1e+02 Score=31.33 Aligned_cols=47 Identities=21% Similarity=0.049 Sum_probs=30.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHH
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEI 1520 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei 1520 (1806)
-.+++-..|.|||..++.++........ .+++++.-..-..++...+
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g--------~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHG--------VRVGTISLEEPVVRTARRL 78 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcC--------ceEEEEEcccCHHHHHHHH
Confidence 3588999999999999888766543211 4677777544344444444
No 389
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=34.13 E-value=1.8e+02 Score=35.68 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=18.5
Q ss_pred EEEcCCCCchHHHHHHHHHHhH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~ 1489 (1806)
++.=+.|.|||..+-++...+.
T Consensus 40 Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 40 LFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred EEECCCCCCHHHHHHHHHHHhc
Confidence 7889999999988888876654
No 390
>PRK10865 protein disaggregation chaperone; Provisional
Probab=33.94 E-value=1.3e+02 Score=42.17 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=23.6
Q ss_pred HHHHHHH--hhcCCceEEEcCCCCchHHHHHHHHHH
Q 000237 1454 INWLAFL--KRFKLHGILCDDMGLGKTLQASAIVAS 1487 (1806)
Q Consensus 1454 V~wL~~l--~~~~~gGILADdMGLGKTlqaIalia~ 1487 (1806)
++.+... .+...+.||.-++|.|||..+-++...
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHH
Confidence 5555442 233446799999999999988777654
No 391
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=33.71 E-value=99 Score=39.30 Aligned_cols=44 Identities=23% Similarity=0.217 Sum_probs=26.2
Q ss_pred ceEEEEcccccccChhhHHHHHHHHhhhcceEEeccCCCCCChhhHH
Q 000237 1573 WNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLW 1619 (1806)
Q Consensus 1573 w~~VILDEaH~IKN~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELw 1619 (1806)
--.+++||.|++ .++++-- +.-.--+..++|-|+-.+|-..++-
T Consensus 105 ~tiLflDEIHRf--nK~QQD~-lLp~vE~G~iilIGATTENPsF~ln 148 (436)
T COG2256 105 RTILFLDEIHRF--NKAQQDA-LLPHVENGTIILIGATTENPSFELN 148 (436)
T ss_pred ceEEEEehhhhc--Chhhhhh-hhhhhcCCeEEEEeccCCCCCeeec
Confidence 356899999998 3333322 2333345566676766677554443
No 392
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=33.67 E-value=1.3e+02 Score=37.47 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=18.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHH
Q 000237 1464 KLHGILCDDMGLGKTLQASAIVA 1486 (1806)
Q Consensus 1464 ~~gGILADdMGLGKTlqaIalia 1486 (1806)
..|.+|.-+.|.|||..+-++..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~ 178 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAH 178 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999988877754
No 393
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=33.29 E-value=54 Score=44.82 Aligned_cols=104 Identities=19% Similarity=0.195 Sum_probs=80.7
Q ss_pred HHHhhcCChhHHHHHHHHHHHHhhhhccHH-HHHHHHHHhhcccCCccchhhccchhHHHHHHHhhcCCcccCCcchhhh
Q 000237 1292 IFKCVCHSHVSVRLAASRCITSMAKSMTIN-VMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVV 1370 (1806)
Q Consensus 1292 ~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~-~~~~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~py~~~l~~ 1370 (1806)
+...+...-..+|.+||+|+..++...+.+ .+..++.+.+-+.++. +-..|.--.-.|..++..+|.++ +...|..
T Consensus 523 ~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei--~~~~Llp 599 (759)
T KOG0211|consen 523 LRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEI--TCEDLLP 599 (759)
T ss_pred HHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHH--HHHHHhH
Confidence 334455556788999999999999988733 6777777888788766 56778888888888888888875 3445556
Q ss_pred hhhhccccCCchhhhhhhhhhhhccccc
Q 000237 1371 PLLRCMSDCDQSVRQSVTRSFASLVPLL 1398 (1806)
Q Consensus 1371 pll~~msd~~~~vr~~~~~~fa~lv~l~ 1398 (1806)
++.+--.|..+.||.-+...|..+++++
T Consensus 600 ~~~~l~~D~vanVR~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 600 VFLDLVKDPVANVRINVAKHLPKILKLL 627 (759)
T ss_pred HHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence 6667778999999999999988888765
No 394
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.02 E-value=59 Score=41.61 Aligned_cols=46 Identities=30% Similarity=0.325 Sum_probs=35.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhh
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI 1524 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~ 1524 (1806)
-+|+-..|.|||+.+.|++.... -..-=|.|.+|...|.-|.++..
T Consensus 189 lLLfGPpgtGKtmL~~aiAsE~~------------atff~iSassLtsK~~Ge~eK~v 234 (428)
T KOG0740|consen 189 LLLFGPPGTGKTMLAKAIATESG------------ATFFNISASSLTSKYVGESEKLV 234 (428)
T ss_pred hheecCCCCchHHHHHHHHhhhc------------ceEeeccHHHhhhhccChHHHHH
Confidence 37899999999999988875421 23445778899999999887765
No 395
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=32.92 E-value=2.3e+02 Score=37.07 Aligned_cols=45 Identities=16% Similarity=0.078 Sum_probs=27.7
Q ss_pred CCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHhh
Q 000237 1473 MGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKFI 1524 (1806)
Q Consensus 1473 MGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf~ 1524 (1806)
.|.|||..-..=++.++..+. + .+++|.|- ++|..+.+.-+.+|+
T Consensus 185 AGSGKT~~La~Kaa~lh~knP------d-~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNP------D-SRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cCCCchhHHHHHHHHHhcCCC------C-ceEEEEeehHHHHHHHHHHHHHHH
Confidence 589999754443444433222 1 57788776 566677777666665
No 396
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=32.88 E-value=1.1e+02 Score=38.12 Aligned_cols=135 Identities=15% Similarity=0.164 Sum_probs=76.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecc-----------------ccHHHHHHHHHHhhccCCc
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS-----------------TLVGHWAFEIEKFIDVSLM 1529 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~-----------------SLl~qW~~Ei~kf~~~p~l 1529 (1806)
++|.--||.|||..+-.+...+..... .++.|++=- +.-..|.+.+.+++. .+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g--------~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le--~~ 71 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERG--------WAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLE--HF 71 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccC--------CeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHH--HH
Confidence 456677999999988777665542211 244444321 222344455555542 11
Q ss_pred eEEEEecCh---------hHHHHHHhhhcCCcEEEeeHHHHHhhHhhhcc---ccceEEEEcccccccChhhHHHHHHHH
Q 000237 1530 STLQYVGSA---------QDRIALREQFDKHNVIITSYDVVRKDADYLGQ---LLWNYCILDEGHIIKNSKSKITVAVKQ 1597 (1806)
Q Consensus 1530 ~vliy~Gs~---------~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~---i~w~~VILDEaH~IKN~~Sk~skalk~ 1597 (1806)
-+.+..|.. ..+......+..++++|............+.. -...++|+|=...++...-..+...+.
T Consensus 72 v~a~~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~ 151 (340)
T TIGR03575 72 LVAVINGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARK 151 (340)
T ss_pred HHHhcCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHH
Confidence 111111111 11333334556677766554333222222221 234579999999998888888888888
Q ss_pred hhhcceEEeccCCC
Q 000237 1598 LKAAHRLILSGTPI 1611 (1806)
Q Consensus 1598 L~A~~RLlLTGTPI 1611 (1806)
..+.+..+.-.+|.
T Consensus 152 ~~~~~~~V~ld~pl 165 (340)
T TIGR03575 152 YSLGFCQLFLDCPV 165 (340)
T ss_pred hCCCEEEEEEeCCH
Confidence 88888888888875
No 397
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=32.77 E-value=2.5e+02 Score=38.61 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=19.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHh
Q 000237 1464 KLHGILCDDMGLGKTLQASAIVASD 1488 (1806)
Q Consensus 1464 ~~gGILADdMGLGKTlqaIalia~l 1488 (1806)
..+-||.=+.|.|||..+-++....
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3456999999999999887776543
No 398
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=32.69 E-value=1.3e+02 Score=34.77 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=57.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec----cccHHHHHHHHHHhhccCCceEEEEecChh--H
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP----STLVGHWAFEIEKFIDVSLMSTLQYVGSAQ--D 1540 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP----~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~--~ 1540 (1806)
.+++-.+|.|||.-++.++........ .+++.+.. ..++..+.... .+.+.-. +..+... .
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g--------~~vly~s~E~~~~~~~~r~~~~~---~~~~~~~--~~~~~~~~~~ 82 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQG--------KPVLFFSLEMSKEQLLQRLLASE---SGISLSK--LRTGSLSDED 82 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--------CceEEEeCCCCHHHHHHHHHHHh---cCCCHHH--HhcCCCCHHH
Confidence 388999999999998888766544311 57888884 33444443221 1111101 1111110 1
Q ss_pred H---HHHHhhhcCCcEEE-----eeHHHHHhhHhhh-ccccceEEEEcccccccCh
Q 000237 1541 R---IALREQFDKHNVII-----TSYDVVRKDADYL-GQLLWNYCILDEGHIIKNS 1587 (1806)
Q Consensus 1541 R---~~l~~~l~~~dVVI-----TSYe~Lr~di~~L-~~i~w~~VILDEaH~IKN~ 1587 (1806)
. ......+....+.| .+.+.+...+..+ .....++||+|=.+.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~ 138 (242)
T cd00984 83 WERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGS 138 (242)
T ss_pred HHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCC
Confidence 1 11122233344444 2445555544433 3457899999998887654
No 399
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=32.68 E-value=2.3e+02 Score=38.99 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1450 QQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|...++-|......+ .|+ ++.-+.|.|||..+-.+...+..
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 444454444433333 345 78899999999999888766544
No 400
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.65 E-value=1.9e+02 Score=42.01 Aligned_cols=87 Identities=24% Similarity=0.236 Sum_probs=57.4
Q ss_pred HHhhcCChhHHHHHH---HHHHHHhh----hhccHHHHHHHHHHhhcccCCccc----hhhccchhHHHHHHHhhcCCcc
Q 000237 1293 FKCVCHSHVSVRLAA---SRCITSMA----KSMTINVMAAVVENAIPMLGDMTS----VHARQGAGMLISLLVQGLGAEL 1361 (1806)
Q Consensus 1293 ~~~l~~~~~~vR~~a---a~c~a~~~----~~~~~~~~~~~~~~~~p~l~~~~~----~~~r~ga~~~~~~~~~~~~~~~ 1361 (1806)
|+..--=...||.+| |+.++.+| ++.....=..++..++|.|-+.+- ...|.=++..+-.++..-|..+
T Consensus 1087 fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~l 1166 (1702)
T KOG0915|consen 1087 FRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKEL 1166 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhh
Confidence 333333345677765 44444444 333333456677888998887643 2568888889999999999999
Q ss_pred cCCcchhhhhhhhccccC
Q 000237 1362 VPYAPLLVVPLLRCMSDC 1379 (1806)
Q Consensus 1362 ~py~~~l~~pll~~msd~ 1379 (1806)
.||..=||+-++...|.-
T Consensus 1167 kP~~~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1167 KPHFPKLIPLLLNAYSEL 1184 (1702)
T ss_pred cchhhHHHHHHHHHcccc
Confidence 999998875555544443
No 401
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=32.59 E-value=1.9e+02 Score=32.24 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=19.1
Q ss_pred EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
++.-+.|.|||..+..++..+..
T Consensus 18 L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 18 LFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred EEECCCCCCHHHHHHHHHHHHcC
Confidence 77889999999999888776543
No 402
>PRK10263 DNA translocase FtsK; Provisional
Probab=32.52 E-value=1.6e+02 Score=42.54 Aligned_cols=55 Identities=20% Similarity=0.313 Sum_probs=37.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCc
Q 000237 1464 KLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLM 1529 (1806)
Q Consensus 1464 ~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l 1529 (1806)
..|.+++--+|.|||...-++|.++..... ++.-.+++|=|+.+ |+..|-+.|++
T Consensus 1010 ~PHLLIAGaTGSGKSv~LntLIlSLl~~~s-----PeeVrl~LIDPK~v------ELs~ye~LPHl 1064 (1355)
T PRK10263 1010 MPHLLVAGTTGSGKSVGVNAMILSMLYKAQ-----PEDVRFIMIDPKML------ELSVYEGIPHL 1064 (1355)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHHhCC-----ccceEEEEECCCcc------chhhhccCccc
Confidence 358899999999999999999887665321 22244566666642 66666544554
No 403
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=32.27 E-value=68 Score=42.95 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=75.4
Q ss_pred hcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCccchhhccchhHHHHHHHhhcCCcccCCcchhhhhhhhc
Q 000237 1296 VCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRC 1375 (1806)
Q Consensus 1296 l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~py~~~l~~pll~~ 1375 (1806)
..+...-||...||.||++++.+..+.+..+++.+-- ...+-..|-.-+.++.+|..-+|-.++||..-++.=+=..
T Consensus 485 idn~deYVRnttarafavvasalgip~llpfLkavc~---SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~g 561 (1172)
T KOG0213|consen 485 IDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCG---SKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHG 561 (1172)
T ss_pred cccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhc---cccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 3467788999999999999999997766665544322 2235567888889999999999999999988655444456
Q ss_pred cccCCchhhhhhhhhhhhcccc
Q 000237 1376 MSDCDQSVRQSVTRSFASLVPL 1397 (1806)
Q Consensus 1376 msd~~~~vr~~~~~~fa~lv~l 1397 (1806)
+.|....||-....+.+.+.+.
T Consensus 562 l~De~qkVR~itAlalsalaea 583 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEA 583 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHh
Confidence 7777788998888887776654
No 404
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=32.26 E-value=2.1e+02 Score=37.34 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=69.8
Q ss_pred chHHHHHHHHHHhcCch------hhHHhhccccccccccchhcccccCCCCCCCCCCchhhhcccccccccccccchh-h
Q 000237 651 STSSVMNLLAEIYSQEE------MIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITS-V 723 (1806)
Q Consensus 651 St~svM~LLa~l~s~~~------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsits-V 723 (1806)
.|++|||||=+|.+-+. +++++.. ..|+|||.-||.-+-++ +
T Consensus 31 ~~~~ImDlLLklIs~d~~~~~~~ilewL~~-------------------------------q~LI~~Li~~L~p~~~~~~ 79 (475)
T PF04499_consen 31 DTPAIMDLLLKLISTDKPESPTGILEWLAE-------------------------------QNLIPRLIDLLSPSYSSDV 79 (475)
T ss_pred CCcHHHHHHHHHHccCcccchHHHHHHHHH-------------------------------hCHHHHHHHHhCCCCCHHH
Confidence 37899999999998653 4444321 46889999999644444 5
Q ss_pred HHHHHHHHHHHHHhccccccccCCCCCCCc--hh-----chhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc
Q 000237 724 RHSAIRTLERLLEAGYKRMIAESSGGSFWP--SF-----ILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQ 789 (1806)
Q Consensus 724 R~a~l~tL~~ll~~~~~~~~~~~~~~~~W~--~~-----i~~~~LR~vFQnlLlE~~~~I~~~s~~vW~~ll~ 789 (1806)
-.+|-..|..++.+....... ...+. .+ ..+++++.++.++|-++....+--+..|-..||+
T Consensus 80 q~naa~~L~aII~is~n~~~~----~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 80 QSNAADFLKAIIRISRNAPQN----EQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIR 148 (475)
T ss_pred HHHHHHHHHHHHHHhhccccc----cccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 556778888888775431111 01111 11 3467888899888876778888888888888885
No 405
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=32.22 E-value=2.3e+02 Score=31.13 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=34.6
Q ss_pred ccceEEEEcccccccChhhHHHHHHHHhhhcceEEeccCCCCCChhhHHhhhhhhCC
Q 000237 1571 LLWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMP 1627 (1806)
Q Consensus 1571 i~w~~VILDEaH~IKN~~Sk~skalk~L~A~~RLlLTGTPIqNnl~ELwSLL~FL~P 1627 (1806)
-.+++||+|=...+.+. ...+..+.+...+++..+|-..+..+...+++++..
T Consensus 66 ~~yD~VIiD~pp~~~~~----~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~ 118 (169)
T cd02037 66 GELDYLVIDMPPGTGDE----HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK 118 (169)
T ss_pred CCCCEEEEeCCCCCcHH----HHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh
Confidence 57999999998765211 111112234466666668888888888888877743
No 406
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=31.68 E-value=68 Score=40.96 Aligned_cols=106 Identities=22% Similarity=0.092 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhcccCCcC-CCcc-------ccchhhhHHHHHHHHhhcCChhhHHHHHHHHHhhccCCceeeeccccc
Q 000237 502 QDCAIRFLCILSLDRFGDYV-SDQV-------VAPVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLL 573 (1806)
Q Consensus 502 eDlaiRlLCVlaLDRFGDyV-SDqV-------VAPVRET~AQ~Lgall~~m~~~~v~~~~~iLl~~q~~~~WEvrHGgLL 573 (1806)
+|-..|..|+++|..+.+-. -+.+ -..||-.+|++|| .+..+ .....|+.+..++...||-+++
T Consensus 67 ~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg----~i~~~---~a~~~L~~~L~~~~p~vR~aal- 138 (410)
T TIGR02270 67 DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALG----WLGGR---QAEPWLEPLLAASEPPGRAIGL- 138 (410)
T ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHh----cCCch---HHHHHHHHHhcCCChHHHHHHH-
Confidence 34567888888888766543 2211 2238888888887 34444 3334455555666666776554
Q ss_pred chhhh------------h-----hhhhhhHHhHH-----hhHHHHHHccCCCCCchHHHhHHhhh
Q 000237 574 GIKYL------------V-----AVRQEMLHGLL-----GYVLPACRAGLEDPDDDVRAVAADAL 616 (1806)
Q Consensus 574 GiKYl------------v-----AVR~dll~~lL-----~~Vl~a~~~GL~D~DDDVraVAA~~L 616 (1806)
+.... + +||..-+. .| ...+|.+..+|.|.|.+||..|+.+|
T Consensus 139 ~al~~r~~~~~~~L~~~L~d~d~~Vra~A~r-aLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 139 AALGAHRHDPGPALEAALTHEDALVRAAALR-ALGELPRRLSESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred HHHHhhccChHHHHHHHhcCCCHHHHHHHHH-HHHhhccccchHHHHHHHcCCCHHHHHHHHHHH
Confidence 22211 0 11222211 11 22344455667777777777777766
No 407
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=30.80 E-value=2.8e+02 Score=31.90 Aligned_cols=73 Identities=27% Similarity=0.436 Sum_probs=50.5
Q ss_pred hhhhcccHHHHHHHHHHHhccchhhhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHHHHHHHHHh---hccCC
Q 000237 1202 GFISRRGSELALRHLCGKFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSI---APMLD 1278 (1806)
Q Consensus 1202 ~~i~RrGA~~al~~l~~~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid~l~vl~~~---~p~~~ 1278 (1806)
-.+.++|...-|.. ..|..++--+|+|=- ||..+++. ...+.+..+|.+|+.+ .+.+-
T Consensus 55 ~flA~~g~~dll~~---~~~~kilPvlPqLI~----plk~AL~t------------r~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 55 RFLARQGIKDLLER---GGGEKILPVLPQLII----PLKRALNT------------RDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred HHHHHHHHHHHHHh---cchhHHHHHHHHHHH----HHHHHHhC------------CCHHHHHHHHHHHHHHHHhhhhhh
Confidence 45566666554444 488888888888744 44332222 2345566777777777 99999
Q ss_pred hhhhHHHHhhhHHHH
Q 000237 1279 EALKPKLLTLLPCIF 1293 (1806)
Q Consensus 1279 ~~l~~~~~~llp~~~ 1293 (1806)
++|-|.+-+++|.+-
T Consensus 116 ~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 116 EALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 408
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=30.56 E-value=2.1e+02 Score=33.40 Aligned_cols=112 Identities=10% Similarity=0.013 Sum_probs=55.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhHHHhhhcC---CccCCCcEEEEec---cccHHHHHHHHHHhhccCCc--eEEEEecC
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDIAERRASN---SIEEIHPSLIICP---STLVGHWAFEIEKFIDVSLM--STLQYVGS 1537 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~~~r~~~~---~~~~~~ptLIVcP---~SLl~qW~~Ei~kf~~~p~l--~vliy~Gs 1537 (1806)
-|+|+-..|.|||.-++.++.+...-..... .....+++|+++- ..-+.+-...+...++...+ +.....|.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 3789999999999999988776432111100 0112368899883 34444444444443321111 11111111
Q ss_pred hhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEccccc
Q 000237 1538 AQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHI 1583 (1806)
Q Consensus 1538 ~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~ 1583 (1806)
..+.. +...+. ......+...++.+....++++|+|.--.
T Consensus 83 -~~~l~----~~~~~~-~~~~~~~~~l~~~~~~~~~~lvviDpl~~ 122 (239)
T cd01125 83 -IQPIS----IAREGR-IIVVPEFERIIEQLLIRRIDLVVIDPLVS 122 (239)
T ss_pred -CCcee----cccCCc-ccccHHHHHHHHHHHhcCCCEEEECChHH
Confidence 00000 000000 12234444444545456789999997543
No 409
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=30.54 E-value=1.4e+02 Score=40.85 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=26.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHH
Q 000237 1465 LHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWA 1517 (1806)
Q Consensus 1465 ~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~ 1517 (1806)
.|.+|.=.+|.|||..+-++..... .+++.|-++.++..|.
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~------------~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESG------------ANFIAVRGPEILSKWV 528 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcC------------CCEEEEehHHHhhccc
Confidence 3457788999999998877754311 3566666665555543
No 410
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=30.34 E-value=4.5e+02 Score=30.88 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=25.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecc
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS 1510 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~ 1510 (1806)
.++.-+.|.|||..+..++....... .+++.|+..
T Consensus 27 ~~i~G~~G~GKTtl~~~~~~~~~~~g---------~~~~yi~~e 61 (230)
T PRK08533 27 ILIEGDESTGKSILSQRLAYGFLQNG---------YSVSYVSTQ 61 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC---------CcEEEEeCC
Confidence 47889999999999888877543211 466777753
No 411
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=30.18 E-value=1.1e+02 Score=38.63 Aligned_cols=152 Identities=19% Similarity=0.112 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHH-HHHHHHHHhhccC
Q 000237 1449 YQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVG-HWAFEIEKFIDVS 1527 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~-qW~~Ei~kf~~~p 1527 (1806)
-|+.||-=. -.|.+.+.--+.|.|||..-...+...... .....-.||++|..-+. |=..-...+....
T Consensus 52 IQqraI~p~----i~G~dv~~qaqsgTgKt~af~i~iLq~iD~------~~ke~qalilaPtreLa~qi~~v~~~lg~~~ 121 (397)
T KOG0327|consen 52 IQQRAILPC----IKGHDVIAQAQSGTGKTAAFLISILQQIDM------SVKETQALILAPTRELAQQIQKVVRALGDHM 121 (397)
T ss_pred HHhcccccc----ccCCceeEeeeccccchhhhHHHHHhhcCc------chHHHHHHHhcchHHHHHHHHHHHHhhhccc
Confidence 366666211 234566777899999998832222221100 01114578999987554 4443344444334
Q ss_pred CceEEEEecChhHH-HHHHhhhcCCcEEEeeHHHHHhhH--hhhccccceEEEEcccccc--cChhhHHHHHHHHhhhc-
Q 000237 1528 LMSTLQYVGSAQDR-IALREQFDKHNVIITSYDVVRKDA--DYLGQLLWNYCILDEGHII--KNSKSKITVAVKQLKAA- 1601 (1806)
Q Consensus 1528 ~l~vliy~Gs~~~R-~~l~~~l~~~dVVITSYe~Lr~di--~~L~~i~w~~VILDEaH~I--KN~~Sk~skalk~L~A~- 1601 (1806)
..++....|...-+ ....-......|++-|-..+--.+ ..+......+.|+||+... ++...+++.....+..+
T Consensus 122 ~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~v 201 (397)
T KOG0327|consen 122 DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDV 201 (397)
T ss_pred ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcch
Confidence 45666555544333 222222223456666654443221 2555666789999999876 45666777777777444
Q ss_pred ceEEeccCC
Q 000237 1602 HRLILSGTP 1610 (1806)
Q Consensus 1602 ~RLlLTGTP 1610 (1806)
..+++|+|-
T Consensus 202 Qv~l~SAT~ 210 (397)
T KOG0327|consen 202 QVVLLSATM 210 (397)
T ss_pred hheeecccC
Confidence 456678874
No 412
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=30.10 E-value=85 Score=37.41 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=16.0
Q ss_pred CCCCchHHHHHHHHHHhHHH
Q 000237 1472 DMGLGKTLQASAIVASDIAE 1491 (1806)
Q Consensus 1472 dMGLGKTlqaIalia~l~~~ 1491 (1806)
-=|.|||..+.++...+...
T Consensus 10 kGGvG~TTltAnLA~aL~~~ 29 (243)
T PF06564_consen 10 KGGVGKTTLTANLAWALARL 29 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 34899999999998877654
No 413
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.01 E-value=4.8e+02 Score=35.34 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=16.9
Q ss_pred EEEcCCCCchHHHHHHHHHHh
Q 000237 1468 ILCDDMGLGKTLQASAIVASD 1488 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l 1488 (1806)
|++-+.|.|||..+..+...+
T Consensus 43 Lf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 43 LFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 788999999999776666554
No 414
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=29.50 E-value=59 Score=36.75 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=21.0
Q ss_pred ceEEEEcccccccChhhHHHHHHHHh-hhcceEEecc
Q 000237 1573 WNYCILDEGHIIKNSKSKITVAVKQL-KAAHRLILSG 1608 (1806)
Q Consensus 1573 w~~VILDEaH~IKN~~Sk~skalk~L-~A~~RLlLTG 1608 (1806)
+++|++||+|-+. ..+.+.+..+ .....++..|
T Consensus 77 ~dvI~IDEaQFf~---~~i~~l~~~~~~~g~~Vi~~G 110 (176)
T PF00265_consen 77 YDVIGIDEAQFFD---EQIVQLVEILANKGIPVICAG 110 (176)
T ss_dssp CSEEEESSGGGST---TTHHHHHHHHHHTT-EEEEEE
T ss_pred CCEEEEechHhhH---HHHHHHHHHHHhCCCeEEEEe
Confidence 8999999999985 3444555554 3344555554
No 415
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=29.43 E-value=1.4e+02 Score=38.37 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=31.0
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhh
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI 1524 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~ 1524 (1806)
+++-=-|.|||.++--+..++.. +. .++|+||-..-..-=.++++...
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk-~~--------~kvllVaaD~~RpAA~eQL~~La 151 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKK-KG--------KKVLLVAADTYRPAAIEQLKQLA 151 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHH-cC--------CceEEEecccCChHHHHHHHHHH
Confidence 45556899999888777766554 22 56777776554444455555555
No 416
>PRK07004 replicative DNA helicase; Provisional
Probab=29.35 E-value=3.6e+02 Score=35.06 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=62.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEE-EEecC--hhHHHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTL-QYVGS--AQDRIA 1543 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vl-iy~Gs--~~~R~~ 1543 (1806)
-|++--+|.|||.-++.++....... ..|++++..---..++...+-... ..+... +..|. ..+...
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~--------~~~v~~fSlEM~~~ql~~R~la~~--~~v~~~~i~~g~l~~~e~~~ 285 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEY--------GLPVAVFSMEMPGTQLAMRMLGSV--GRLDQHRMRTGRLTDEDWPK 285 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHc--------CCeEEEEeCCCCHHHHHHHHHHhh--cCCCHHHHhcCCCCHHHHHH
Confidence 38999999999999988876543211 157888877666666665553222 111111 11121 122222
Q ss_pred H---HhhhcCCcEEEe-----eHHHHHhhHhhhcc-c-cceEEEEcccccccC
Q 000237 1544 L---REQFDKHNVIIT-----SYDVVRKDADYLGQ-L-LWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1544 l---~~~l~~~dVVIT-----SYe~Lr~di~~L~~-i-~w~~VILDEaH~IKN 1586 (1806)
+ ...+.+..+.|. +...++.....+.. . ..++||+|=-|.+.+
T Consensus 286 ~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 286 LTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 2 224455667663 44555555544433 2 368999999888864
No 417
>PRK04132 replication factor C small subunit; Provisional
Probab=29.28 E-value=2.1e+02 Score=40.03 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=31.8
Q ss_pred cceEEEEcccccccChhhHHHHHHHHh---hhcceEEeccCCCCCChhhHHhhhh
Q 000237 1572 LWNYCILDEGHIIKNSKSKITVAVKQL---KAAHRLILSGTPIQNNITDLWSLFD 1623 (1806)
Q Consensus 1572 ~w~~VILDEaH~IKN~~Sk~skalk~L---~A~~RLlLTGTPIqNnl~ELwSLL~ 1623 (1806)
.|..||+||+|.+.. ......++-+ ....+++|+.++...=+.-+-|-+.
T Consensus 630 ~~KVvIIDEaD~Lt~--~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~ 682 (846)
T PRK04132 630 SFKIIFLDEADALTQ--DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 682 (846)
T ss_pred CCEEEEEECcccCCH--HHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhce
Confidence 478999999999942 2222222333 3577899998887655555555443
No 418
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=29.20 E-value=5.6e+02 Score=32.03 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=19.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHHhH
Q 000237 1465 LHGILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1465 ~gGILADdMGLGKTlqaIalia~l~ 1489 (1806)
.+.++.-..|.|||..+-.++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3468899999999998888876543
No 419
>PRK09183 transposase/IS protein; Provisional
Probab=29.14 E-value=2.9e+02 Score=33.05 Aligned_cols=25 Identities=28% Similarity=0.173 Sum_probs=19.2
Q ss_pred cCCceEEEcCCCCchHHHHHHHHHH
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVAS 1487 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia~ 1487 (1806)
.+.+.+|.-+.|.|||..+.++...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3445577779999999999888544
No 420
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=28.83 E-value=7.9e+02 Score=29.73 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=27.7
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhh
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI 1524 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~ 1524 (1806)
.+.-..|.|||.++.-+...+...+ +++++|.-..-...=.+++..|.
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~g---------~~V~li~~D~~r~~a~~ql~~~~ 123 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQG---------KSVLLAAGDTFRAAAIEQLEEWA 123 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcC---------CEEEEEeCCCCCHHHHHHHHHHH
Confidence 4556999999998888776543221 45666664321111134555555
No 421
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=28.59 E-value=1.4e+02 Score=34.71 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=23.3
Q ss_pred ceEEEEcccccccChhhHHHHHHHHhhh--cceEEecc
Q 000237 1573 WNYCILDEGHIIKNSKSKITVAVKQLKA--AHRLILSG 1608 (1806)
Q Consensus 1573 w~~VILDEaH~IKN~~Sk~skalk~L~A--~~RLlLTG 1608 (1806)
.+.|.+||+|-+.. .+-..+..+.. ..++++.|
T Consensus 83 ~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 83 VDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYG 117 (201)
T ss_pred cCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEec
Confidence 68999999999843 45555666643 56777777
No 422
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=28.47 E-value=1.8e+02 Score=36.11 Aligned_cols=26 Identities=35% Similarity=0.254 Sum_probs=21.5
Q ss_pred cCCceEEEcCCCCchHHHHHHHHHHh
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVASD 1488 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia~l 1488 (1806)
-..++.|.-..|.|||+++=++++.+
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 45678899999999999998887653
No 423
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=28.31 E-value=4.8e+02 Score=33.35 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=59.0
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEE-EEecC--hhHHHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTL-QYVGS--AQDRIA 1543 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vl-iy~Gs--~~~R~~ 1543 (1806)
.+++-.+|.|||.-++.++........ .+++++..---..+....+..+. ..+... +..|. ..+..+
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g--------~~vl~~SlEm~~~~i~~R~~~~~--~~v~~~~~~~g~l~~~~~~~ 267 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEG--------KPVAFFSLEMSAEQLAMRMLSSE--SRVDSQKLRTGKLSDEDWEK 267 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC--------CeEEEEeCcCCHHHHHHHHHHHh--cCCCHHHhccCCCCHHHHHH
Confidence 389999999999988888765432111 57888887554444444443332 111110 01121 111111
Q ss_pred H---HhhhcCCcEEEe-----eHHHHHhhHhhh-ccccceEEEEcccccccC
Q 000237 1544 L---REQFDKHNVIIT-----SYDVVRKDADYL-GQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1544 l---~~~l~~~dVVIT-----SYe~Lr~di~~L-~~i~w~~VILDEaH~IKN 1586 (1806)
+ ...+.+..+.|. +-+.++..+..+ .....++||+|=-|.++.
T Consensus 268 ~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~ 319 (434)
T TIGR00665 268 LTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMSG 319 (434)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCC
Confidence 1 223344455552 344455444333 344679999999888864
No 424
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=28.31 E-value=3e+02 Score=34.03 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhcCC--ce-EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1450 QQEGINWLAFLKRFKL--HG-ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~~--gG-ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
|.+.++.+......+. ++ ++.-+.|.||+..+.+++..+..
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc 52 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLS 52 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5566666655544443 44 77789999999999999887654
No 425
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=28.28 E-value=3e+02 Score=36.93 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=19.4
Q ss_pred cCCceEEEcCCCCchHHHHHHHHH
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVA 1486 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia 1486 (1806)
...|.+||-.+|-|||+.+=|+..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVAN 567 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVAN 567 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhh
Confidence 445669999999999998877653
No 426
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=28.05 E-value=91 Score=36.93 Aligned_cols=120 Identities=17% Similarity=0.103 Sum_probs=64.2
Q ss_pred cchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHhh
Q 000237 1446 LRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKFI 1524 (1806)
Q Consensus 1446 LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf~ 1524 (1806)
|-+-|...|++ ..+.-++--..|.|||.+.+.-++.+..... .....+|+|++.. ....-...+...+
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhc
Confidence 45678888865 2334455567999999999888887766432 1225799999865 4445555565554
Q ss_pred ccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhH-h---hhccccceEEEEcccc
Q 000237 1525 DVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDA-D---YLGQLLWNYCILDEGH 1582 (1806)
Q Consensus 1525 ~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di-~---~L~~i~w~~VILDEaH 1582 (1806)
+.... ......+.... .-....+.|.|++.+...+ . ....+..++-|+|+..
T Consensus 70 ~~~~~-----~~~~~~~~~~~-~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 70 EEEQQ-----ESSDNERLRRQ-LSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HHCCH-----CCTT-HHHHHH-HHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred Ccccc-----ccccccccccc-ccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 21100 00011111111 1123567888888775432 1 1222334566666655
No 427
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=27.87 E-value=4.5e+02 Score=39.74 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=74.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIE 1521 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~ 1521 (1806)
+...|-+-|++++..+.. ....-.++---.|.|||.+.-+++........ .....++.++|..-.- .++.
T Consensus 964 ~~~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~-----~~~~~V~glAPTgrAA---k~L~ 1033 (1747)
T PRK13709 964 LMEGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPE-----SERPRVVGLGPTHRAV---GEMR 1033 (1747)
T ss_pred hcCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhc-----ccCceEEEECCcHHHH---HHHH
Confidence 345789999999987642 22334577789999999887666654322110 0113466677755332 2222
Q ss_pred HhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHhh-h
Q 000237 1522 KFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLK-A 1600 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L~-A 1600 (1806)
. .+ .... .+...+...+. .... .......-+++|+||+-.+.+. ...+.++.+. .
T Consensus 1034 e-~G-----------i~A~--TI~s~L~~~~~-------~~~~-~~~~~~~~~llIVDEaSMv~~~--~m~~Ll~~~~~~ 1089 (1747)
T PRK13709 1034 S-AG-----------VDAQ--TLASFLHDTQL-------QQRS-GETPDFSNTLFLLDESSMVGNT--DMARAYALIAAG 1089 (1747)
T ss_pred h-cC-----------cchh--hHHHHhccccc-------cccc-ccCCCCCCcEEEEEccccccHH--HHHHHHHhhhcC
Confidence 2 11 1000 01111111000 0000 0011134579999999998443 3445555554 3
Q ss_pred cceEEeccCCCCCChh
Q 000237 1601 AHRLILSGTPIQNNIT 1616 (1806)
Q Consensus 1601 ~~RLlLTGTPIqNnl~ 1616 (1806)
..|++|.|=+-|-...
T Consensus 1090 garvVLVGD~~QL~sV 1105 (1747)
T PRK13709 1090 GGRAVSSGDTDQLQAI 1105 (1747)
T ss_pred CCEEEEecchHhcCCC
Confidence 6799999977765443
No 428
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=27.83 E-value=5.5e+02 Score=32.75 Aligned_cols=109 Identities=12% Similarity=0.097 Sum_probs=58.4
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhh-ccCCceEEEEecC--hhHHHH-
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI-DVSLMSTLQYVGS--AQDRIA- 1543 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~-~~p~l~vliy~Gs--~~~R~~- 1543 (1806)
+++-.+|.|||.-++.++....... ..+++++..-.-..+....+-... +.+.-. ...|. ..+...
T Consensus 198 viag~pg~GKT~~al~ia~~~a~~~--------g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~--~~~~~l~~~~~~~~ 267 (421)
T TIGR03600 198 VIGARPSMGKTTLALNIAENVALRE--------GKPVLFFSLEMSAEQLGERLLASKSGINTGN--IRTGRFNDSDFNRL 267 (421)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhC--------CCcEEEEECCCCHHHHHHHHHHHHcCCCHHH--HhcCCCCHHHHHHH
Confidence 9999999999999988875543211 158888886554455544433222 111111 01111 111111
Q ss_pred --HHhhhcCCcEEEe-----eHHHHHhhHhhhc-cc-cceEEEEcccccccC
Q 000237 1544 --LREQFDKHNVIIT-----SYDVVRKDADYLG-QL-LWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1544 --l~~~l~~~dVVIT-----SYe~Lr~di~~L~-~i-~w~~VILDEaH~IKN 1586 (1806)
....+.+..++|. |-+.++..+..+. .. ..++||+|=-|.+..
T Consensus 268 ~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 268 LNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 1223344455553 3444454444332 22 478999998888864
No 429
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=27.72 E-value=78 Score=39.38 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=30.6
Q ss_pred cceEEEEcccccccChhhHHHHHHHHhhhcceEEeccCCCCCCh
Q 000237 1572 LWNYCILDEGHIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNI 1615 (1806)
Q Consensus 1572 ~w~~VILDEaH~IKN~~Sk~skalk~L~A~~RLlLTGTPIqNnl 1615 (1806)
+=.+||+||||+ ..--+.-..+.+|-.+.+..+||.+.|=++
T Consensus 243 ~dAfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 243 NDAFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred CCeEEEEecccc--cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 346899999998 233333445667778889999999987664
No 430
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.29 E-value=2.7e+02 Score=36.58 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcC--Cce-EEEcCCCCchHHHHHHHHHHhH
Q 000237 1450 QQEGINWLAFLKRFK--LHG-ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1450 Q~eGV~wL~~l~~~~--~gG-ILADdMGLGKTlqaIalia~l~ 1489 (1806)
|...+..|....+.+ .|+ +++=+.|.|||..+-.+...+.
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444455444433333 244 6789999999988877766543
No 431
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.24 E-value=1.1e+02 Score=41.84 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=89.0
Q ss_pred HHHHHHHhhccCChhhhHHHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCccchhhccc
Q 000237 1266 NIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLGDMTSVHARQG 1345 (1806)
Q Consensus 1266 ~l~vl~~~~p~~~~~l~~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~r~g 1345 (1806)
+|+.++-++-.=.++-.-.-...+...+..|+++.+.|=..|-+-++++|.+.+.+.++-+.+.-..+-+.. ....|--
T Consensus 747 gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~-~~d~~lk 825 (982)
T KOG4653|consen 747 GLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKL-QTDYRLK 825 (982)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCC-Cccceeh
Confidence 445555555433333333333456667889999999999999999999999999999988888665544332 1344555
Q ss_pred hhHHHHHHHhhcCCcccCCcchhhhhhhhccccCCchhhhhhhhhhhhccc
Q 000237 1346 AGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSVTRSFASLVP 1396 (1806)
Q Consensus 1346 a~~~~~~~~~~~~~~~~py~~~l~~pll~~msd~~~~vr~~~~~~fa~lv~ 1396 (1806)
-+|+|..++...|.-..-|...++.-.|.-..|+|+..|-+.-..|+.+-.
T Consensus 826 VGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 826 VGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 559999999999998888877665555555556666667655544544433
No 432
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=27.18 E-value=7e+02 Score=33.30 Aligned_cols=142 Identities=16% Similarity=0.068 Sum_probs=76.8
Q ss_pred cccccccchHHHHHHHHHHHHhhcCCc------eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecccc-
Q 000237 1440 TELKVTLRRYQQEGINWLAFLKRFKLH------GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTL- 1512 (1806)
Q Consensus 1440 ~~lk~~LRpYQ~eGV~wL~~l~~~~~g------GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SL- 1512 (1806)
++....|-|||+..+.-|.-.+..+-+ +++.-.=|=|||..+.+++....-.... .-..+.|++|.--
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~-----~~~~~~i~A~s~~q 130 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR-----SGAGIYILAPSVEQ 130 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh-----cCCcEEEEeccHHH
Confidence 456778999999999776533332222 3677788899998877776554332211 1146788888542
Q ss_pred HHHHHHHHHHhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeH---H---HHHhhHhhhccccceEEEEcccccccC
Q 000237 1513 VGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSY---D---VVRKDADYLGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1513 l~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSY---e---~Lr~di~~L~~i~w~~VILDEaH~IKN 1586 (1806)
..+=-.+++.-+ ...+ .-+ .......+.+.|+-- . .+..+.......+....|+||-|..++
T Consensus 131 a~~~F~~ar~mv--~~~~--------~l~--~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~ 198 (546)
T COG4626 131 AANSFNPARDMV--KRDD--------DLR--DLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGK 198 (546)
T ss_pred HHHhhHHHHHHH--HhCc--------chh--hhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcC
Confidence 233333333322 0000 001 111122333332211 1 123344556677899999999999988
Q ss_pred hhhHHHHHHHHh
Q 000237 1587 SKSKITVAVKQL 1598 (1806)
Q Consensus 1587 ~~Sk~skalk~L 1598 (1806)
+.-....+...+
T Consensus 199 ~~~~~~~~~~g~ 210 (546)
T COG4626 199 QEDMYSEAKGGL 210 (546)
T ss_pred HHHHHHHHHhhh
Confidence 863333333444
No 433
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=27.13 E-value=1.1e+02 Score=40.99 Aligned_cols=49 Identities=18% Similarity=0.084 Sum_probs=39.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~ 1490 (1806)
+..++|+-|.+-.+-+......|.-||+-..+|.|||+..||-......
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 5557888898877777777778888999999999999999888665443
No 434
>PF13173 AAA_14: AAA domain
Probab=27.07 E-value=55 Score=34.39 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=26.5
Q ss_pred cceEEEEcccccccChhhHHHHHHHHh---hhcceEEeccCCCCC
Q 000237 1572 LWNYCILDEGHIIKNSKSKITVAVKQL---KAAHRLILSGTPIQN 1613 (1806)
Q Consensus 1572 ~w~~VILDEaH~IKN~~Sk~skalk~L---~A~~RLlLTGTPIqN 1613 (1806)
.-.++++||+|++.+ ....++.+ ..+.++++||.-...
T Consensus 61 ~~~~i~iDEiq~~~~----~~~~lk~l~d~~~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD----WEDALKFLVDNGPNIKIILTGSSSSL 101 (128)
T ss_pred CCcEEEEehhhhhcc----HHHHHHHHHHhccCceEEEEccchHH
Confidence 567899999999964 34445544 235689999975443
No 435
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=26.86 E-value=3.6e+02 Score=40.30 Aligned_cols=150 Identities=17% Similarity=0.131 Sum_probs=78.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIE 1521 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~ 1521 (1806)
....|-+-|++++..+. .....-.++-=..|.|||.+.-+++......... ....++.++|..-.- .++.
T Consensus 832 ~~~~Lt~~Qr~Av~~iL--ts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~-----~g~~V~glAPTgkAa---~~L~ 901 (1623)
T PRK14712 832 LMEKLTSGQRAATRMIL--ETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES-----ERPRVVGLGPTHRAV---GEMR 901 (1623)
T ss_pred hhcccCHHHHHHHHHHH--hCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc-----cCceEEEEechHHHH---HHHH
Confidence 34478999999997653 2223346777899999998876665443221100 013466677754332 2222
Q ss_pred HhhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHhh-h
Q 000237 1522 KFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLK-A 1600 (1806)
Q Consensus 1522 kf~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L~-A 1600 (1806)
. .+.+. . .+...+.... .+. .. ..-....-+++|+||+-.+.+ ....+.+..+. .
T Consensus 902 e-~Gi~A-----------~--TIasfL~~~~----~~~--~~--~~~~~~~~~llIVDEASMV~~--~~m~~ll~~~~~~ 957 (1623)
T PRK14712 902 S-AGVDA-----------Q--TLASFLHDTQ----LQQ--RS--GETPDFSNTLFLLDESSMVGN--TDMARAYALIAAG 957 (1623)
T ss_pred H-hCchH-----------h--hHHHHhcccc----chh--hc--ccCCCCCCcEEEEEccccccH--HHHHHHHHhhhhC
Confidence 2 11000 0 0111111000 000 00 000113357999999999844 33444455554 3
Q ss_pred cceEEeccCCCCCChhhHHhhhhhh
Q 000237 1601 AHRLILSGTPIQNNITDLWSLFDFL 1625 (1806)
Q Consensus 1601 ~~RLlLTGTPIqNnl~ELwSLL~FL 1625 (1806)
..|++|.|=+-|-...+-=+.|..|
T Consensus 958 garvVLVGD~~QL~sV~aG~~F~~l 982 (1623)
T PRK14712 958 GGRAVASGDTDQLQAIAPGQPFRLQ 982 (1623)
T ss_pred CCEEEEEcchhhcCCCCCCHHHHHH
Confidence 5799999988877665544445443
No 436
>PRK08506 replicative DNA helicase; Provisional
Probab=26.83 E-value=4.6e+02 Score=34.25 Aligned_cols=109 Identities=11% Similarity=0.132 Sum_probs=62.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhh-ccCCceEEEEecC--hhHHHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI-DVSLMSTLQYVGS--AQDRIA 1543 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~-~~p~l~vliy~Gs--~~~R~~ 1543 (1806)
-|++-.+|.|||.-++.++...... ..+++++..---..++...+-... +.+.-+. ..|. ..+...
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~---------g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i--~~~~l~~~e~~~ 263 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQ---------DKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNL--RTGDLDDDEWER 263 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhc---------CCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHH--hcCCCCHHHHHH
Confidence 3999999999999998888654321 157888887666666665554332 1111110 1121 112211
Q ss_pred H---HhhhcCCcEEEe-----eHHHHHhhHhhhcc-c-cceEEEEcccccccC
Q 000237 1544 L---REQFDKHNVIIT-----SYDVVRKDADYLGQ-L-LWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1544 l---~~~l~~~dVVIT-----SYe~Lr~di~~L~~-i-~w~~VILDEaH~IKN 1586 (1806)
+ ...+.+..++|. |.+.++..+..+.. . ..++||+|=-|.+..
T Consensus 264 ~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 264 LSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 1 223445556663 34555555554432 2 368999999988864
No 437
>PRK10867 signal recognition particle protein; Provisional
Probab=26.80 E-value=5.5e+02 Score=33.35 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=18.6
Q ss_pred EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
+++--.|.|||.++.-++.++..
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHH
Confidence 67779999999998888776544
No 438
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=26.73 E-value=3.9e+02 Score=32.85 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=32.9
Q ss_pred ccchHHHHHHHHHHHHhhcCC--ceEEEcCCCCchHHHHHHHHHHhHHH
Q 000237 1445 TLRRYQQEGINWLAFLKRFKL--HGILCDDMGLGKTLQASAIVASDIAE 1491 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~--gGILADdMGLGKTlqaIalia~l~~~ 1491 (1806)
+|...|...+..+......+. |++|... |.||+..+..+...+...
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~ 49 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCE 49 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCC
Confidence 466778888887766655443 5666655 689999888888776653
No 439
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.52 E-value=1e+02 Score=38.64 Aligned_cols=50 Identities=26% Similarity=0.287 Sum_probs=34.4
Q ss_pred cCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhh
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI 1524 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~ 1524 (1806)
...|-+|...+|.|||+.+-++.... . .+.+=|--.+++..|.-|-+|.+
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea-----g-------a~fInv~~s~lt~KWfgE~eKlv 175 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA-----G-------ANFINVSVSNLTSKWFGEAQKLV 175 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc-----C-------CCcceeeccccchhhHHHHHHHH
Confidence 44556888999999999887765321 0 23333444678889998888876
No 440
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=26.41 E-value=1.2e+02 Score=36.12 Aligned_cols=38 Identities=16% Similarity=-0.031 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHH
Q 000237 1449 YQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVA 1486 (1806)
Q Consensus 1449 YQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia 1486 (1806)
+.+.-++.+......+.+.+|.-++|.|||..+-++..
T Consensus 6 ~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 6 AVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHH
Confidence 33444444444445666779999999999998877754
No 441
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=26.37 E-value=7.8e+02 Score=31.98 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=16.8
Q ss_pred EEEcCCCCchHHHHHHHHHHhH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~ 1489 (1806)
.++--.|.|||.++.-+...+.
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4666899999988877776543
No 442
>PRK05642 DNA replication initiation factor; Validated
Probab=26.10 E-value=2.1e+02 Score=33.53 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=23.3
Q ss_pred ceEEEEcccccccChhh---HHHHHHHHhh-hcceEEeccC
Q 000237 1573 WNYCILDEGHIIKNSKS---KITVAVKQLK-AAHRLILSGT 1609 (1806)
Q Consensus 1573 w~~VILDEaH~IKN~~S---k~skalk~L~-A~~RLlLTGT 1609 (1806)
.+++|+|+.|.+.+... ..+..+..+. ...++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 47899999998865332 2333333333 3467888876
No 443
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=26.10 E-value=18 Score=50.74 Aligned_cols=46 Identities=26% Similarity=0.239 Sum_probs=39.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHH
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVAS 1487 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~ 1487 (1806)
+.....++|.....|+......+.+|.++|+||+|||..-.+++..
T Consensus 283 ~~~~~l~~~~~~~~~~l~~e~l~~~~t~~de~gl~k~~E~~a~~~~ 328 (1394)
T KOG0298|consen 283 VFKLKLCFQFYSFEEELPKESLSPGGTLADEMGLGKTVEFLAMLTS 328 (1394)
T ss_pred HhhhccceecccccccchhccCCCcchHHHHhhhHHHHHHHHHHhc
Confidence 3455677899999999888888889999999999999988888764
No 444
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=26.04 E-value=2.5e+02 Score=32.56 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=31.7
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHh
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKF 1523 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf 1523 (1806)
++.-+.|.|||.-+..++...... ..+++.|.=..-.....+.+..+
T Consensus 29 ~i~G~~GsGKt~l~~~~~~~~~~~---------g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 29 LIEGDHGTGKSVLSQQFVYGALKQ---------GKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred EEECCCCCChHHHHHHHHHHHHhC---------CCEEEEEEcCCCHHHHHHHHHHC
Confidence 777899999999998887643321 14677777554455555555554
No 445
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=25.78 E-value=3.4e+02 Score=32.03 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=63.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHH-HHHHHHHHhhccCCceEEEEecC--hhHHHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVG-HWAFEIEKFIDVSLMSTLQYVGS--AQDRIA 1543 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~-qW~~Ei~kf~~~p~l~vliy~Gs--~~~R~~ 1543 (1806)
.+++-.+|.|||.-++-++........ .++++++.---.. -+.+-+....+.+.-+. ..|. ..+...
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~--------~~vly~SlEm~~~~l~~R~la~~s~v~~~~i--~~g~l~~~e~~~ 91 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGG--------YPVLYFSLEMSEEELAARLLARLSGVPYNKI--RSGDLSDEEFER 91 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTS--------SEEEEEESSS-HHHHHHHHHHHHHTSTHHHH--HCCGCHHHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcC--------CeEEEEcCCCCHHHHHHHHHHHhhcchhhhh--hccccCHHHHHH
Confidence 499999999999999888876554311 5899998854333 33444444433221111 1121 122222
Q ss_pred H---HhhhcCCcEEEee-----HHHHHhhHhhhcc--ccceEEEEcccccccCh
Q 000237 1544 L---REQFDKHNVIITS-----YDVVRKDADYLGQ--LLWNYCILDEGHIIKNS 1587 (1806)
Q Consensus 1544 l---~~~l~~~dVVITS-----Ye~Lr~di~~L~~--i~w~~VILDEaH~IKN~ 1587 (1806)
+ ...+....++|.. .+.++..+..+.. ...++||+|=.|.++.+
T Consensus 92 ~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 92 LQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 2 2344555566543 4455555544433 46789999999999874
No 446
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=25.67 E-value=1.2e+02 Score=38.50 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=17.8
Q ss_pred CceEEEcCCCCchHHHHHHHHH
Q 000237 1465 LHGILCDDMGLGKTLQASAIVA 1486 (1806)
Q Consensus 1465 ~gGILADdMGLGKTlqaIalia 1486 (1806)
.|.+|.=+.|.|||..+-++..
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CceEEECCCCCChHHHHHHHHH
Confidence 4558899999999998877754
No 447
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=25.49 E-value=1.2e+02 Score=34.13 Aligned_cols=28 Identities=36% Similarity=0.232 Sum_probs=21.1
Q ss_pred cCCceEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia~l~~ 1490 (1806)
.+.+-+|.-.+|.|||..+.+++.....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 3445577789999999999999876554
No 448
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.37 E-value=2.8e+02 Score=34.68 Aligned_cols=122 Identities=18% Similarity=0.223 Sum_probs=66.1
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEEEE-ecChhHHHHHHh
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQY-VGSAQDRIALRE 1546 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vliy-~Gs~~~R~~l~~ 1546 (1806)
++.-=.|.|||.+ |+=++....... .++++.+--+-..-=.++++.|...-...++.. .|.. -..
T Consensus 143 l~vGVNG~GKTTT-IaKLA~~l~~~g--------~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~D--pAa--- 208 (340)
T COG0552 143 LFVGVNGVGKTTT-IAKLAKYLKQQG--------KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGAD--PAA--- 208 (340)
T ss_pred EEEecCCCchHhH-HHHHHHHHHHCC--------CeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCC--cHH---
Confidence 4445689999965 454444333221 467777766655555566666663222333221 1211 111
Q ss_pred hhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHH------HHHHHh--hhcceEEec--cCCCCCChh
Q 000237 1547 QFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKIT------VAVKQL--KAAHRLILS--GTPIQNNIT 1616 (1806)
Q Consensus 1547 ~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~s------kalk~L--~A~~RLlLT--GTPIqNnl~ 1616 (1806)
+-|+.+ +.-....+++|++|=|=++-|...... +.++.. .++|.++|. ||-=||.+.
T Consensus 209 ---------VafDAi----~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~ 275 (340)
T COG0552 209 ---------VAFDAI----QAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALS 275 (340)
T ss_pred ---------HHHHHH----HHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHH
Confidence 123333 344456789999999999877554332 222222 356666654 777777654
No 449
>CHL00176 ftsH cell division protein; Validated
Probab=25.36 E-value=3.1e+02 Score=37.23 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=18.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHH
Q 000237 1464 KLHGILCDDMGLGKTLQASAIVA 1486 (1806)
Q Consensus 1464 ~~gGILADdMGLGKTlqaIalia 1486 (1806)
..|.+|.-++|.|||..+=++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999998877743
No 450
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=25.31 E-value=4.9e+02 Score=32.01 Aligned_cols=22 Identities=41% Similarity=0.430 Sum_probs=17.5
Q ss_pred CceEEEcCCCCchHHHHHHHHH
Q 000237 1465 LHGILCDDMGLGKTLQASAIVA 1486 (1806)
Q Consensus 1465 ~gGILADdMGLGKTlqaIalia 1486 (1806)
.+.++.-..|.|||..+-++..
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~ 73 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIAN 73 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 3568899999999988776654
No 451
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=25.15 E-value=6.4e+02 Score=27.93 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=54.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHhHHHhhhcC-CccCCCcEEEEeccccHHHHHHHHHHhhccCCceEEEEecChhHHHHH
Q 000237 1466 HGILCDDMGLGKTLQASAIVASDIAERRASN-SIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIAL 1544 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIalia~l~~~r~~~~-~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vliy~Gs~~~R~~l 1544 (1806)
-++++-..|.|||..++.++........... ......++|+|....-..++.+.+..... .. ....+...
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~--~~-------~~~~~~~~ 104 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQ--DY-------DDDANLFF 104 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHT--TS--------HHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhc--cc-------CCccceEE
Confidence 3689999999999999999887653211100 00123688998887667777777777662 22 11122222
Q ss_pred HhhhcCCcEEEe--------eHHHHHhhHhhhcc-ccceEEEEcccccccC
Q 000237 1545 REQFDKHNVIIT--------SYDVVRKDADYLGQ-LLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1545 ~~~l~~~dVVIT--------SYe~Lr~di~~L~~-i~w~~VILDEaH~IKN 1586 (1806)
........+-+. .-..+....+.+.. ...++||||=...+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~ 155 (193)
T PF13481_consen 105 VDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHD 155 (193)
T ss_dssp HHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--
T ss_pred eeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhc
Confidence 211000111121 12233344455555 5689999998777644
No 452
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=25.15 E-value=1.6e+02 Score=36.94 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=45.2
Q ss_pred ccchHHHHHHHHHHHHhh--cCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHH---HH
Q 000237 1445 TLRRYQQEGINWLAFLKR--FKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWA---FE 1519 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~--~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~---~E 1519 (1806)
+|-+-|+..+++...... .+..-.+-=.-|.|||...=++....... ...+++++|..+...=. .-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~---------~~~~~~~a~tg~AA~~i~~G~T 71 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR---------GKKVLVTAPTGIAAFNIPGGRT 71 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc---------cceEEEecchHHHHHhccCCcc
Confidence 366789999888754443 23334677789999998777766543221 15788888976554322 34
Q ss_pred HHHhh
Q 000237 1520 IEKFI 1524 (1806)
Q Consensus 1520 i~kf~ 1524 (1806)
++.++
T Consensus 72 ~hs~f 76 (364)
T PF05970_consen 72 IHSFF 76 (364)
T ss_pred hHHhc
Confidence 55555
No 453
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=25.12 E-value=4.8e+02 Score=28.37 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=16.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~ 1490 (1806)
-++.=+.|.|||...-.++.....
T Consensus 27 ~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 27 LLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 478889999999988776665443
No 454
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=25.06 E-value=2.1e+02 Score=37.79 Aligned_cols=25 Identities=36% Similarity=0.287 Sum_probs=19.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHh
Q 000237 1464 KLHGILCDDMGLGKTLQASAIVASD 1488 (1806)
Q Consensus 1464 ~~gGILADdMGLGKTlqaIalia~l 1488 (1806)
..|.+|.=.+|.|||..+-++...+
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhh
Confidence 3456888899999999887776543
No 455
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.99 E-value=1.4e+03 Score=31.83 Aligned_cols=270 Identities=16% Similarity=0.193 Sum_probs=148.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCC-CCCCcchHHHHHhhhhhchHHHHHHHHHHHH
Q 000237 1047 SRQMLDDIESIKQRMLTTSGYLKCVQSNLHVTVSALVAAAVVWMSELP-ARLNPIILPLMASIKREQEEKLQEKAAEALA 1125 (1806)
Q Consensus 1047 ~~~~~~~le~~r~~l~~~i~~~~~~~~~~~~~V~A~~A~A~v~l~~LP-~KLNPiIkpLMeSIK~EEn~~LQ~~sA~sla 1125 (1806)
+|.+.--|-+-||.++.-+ +++.|+-++.+-+=.+.-|+++++.+= +-+=|=+-|..|-+=+-.++-+.+.|+-+..
T Consensus 90 GYLaamLlLdE~qdvllLl--tNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~ 167 (866)
T KOG1062|consen 90 GYLAAMLLLDERQDLLLLL--TNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAV 167 (866)
T ss_pred HHHHHHHHhccchHHHHHH--HHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4556556666677766654 466777788777777888999998874 2333344444444444488999999999999
Q ss_pred HHHHHhhcCCCCChhHHHHHhhhhccCCCCCCCccccCCCccccccccccccccccCcccccccccCCCccccccchhhh
Q 000237 1126 ELIADCIARKPSPNDKLIKNICSLTSMDPCETPQAAAMGSMEIIDDQDFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFIS 1205 (1806)
Q Consensus 1126 ~Li~~~~~~~~~p~~KIikNLc~flC~D~~~tP~~~~~~~~~~~~~~gilsl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1205 (1806)
++|.. -|.=..-++-+--+.+|.- ++|+|-
T Consensus 168 r~irK----~P~l~e~f~~~~~~lL~ek-----------------~hGVL~----------------------------- 197 (866)
T KOG1062|consen 168 RFIRK----VPDLVEHFVIAFRKLLCEK-----------------HHGVLI----------------------------- 197 (866)
T ss_pred HHHHc----CchHHHHhhHHHHHHHhhc-----------------CCceee-----------------------------
Confidence 99973 2222223333333344410 123321
Q ss_pred cccHHHHHHHHHH-------HhccchhhhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHHHHHHHHHhhccCC
Q 000237 1206 RRGSELALRHLCG-------KFGVSLFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLD 1278 (1806)
Q Consensus 1206 RrGA~~al~~l~~-------~fg~~l~~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid~l~vl~~~~p~~~ 1278 (1806)
|+..-+..+|+ +|..-.-+=|-.|+++....+.+.++- ....++.-=|.-|.+||.+.-. |
T Consensus 198 --~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv---------~gi~dPFLQi~iLrlLriLGq~-d 265 (866)
T KOG1062|consen 198 --AGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDV---------HGISDPFLQIRILRLLRILGQN-D 265 (866)
T ss_pred --eHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCc---------cCCCchHHHHHHHHHHHHhcCC-C
Confidence 12223344444 365544444556677777666543331 1334556667788888876655 7
Q ss_pred hhhhHHHHhhhHHHHHhhc--------------------CChhHHHHHHHHHHHHhhh-------hccHHHHHHHH----
Q 000237 1279 EALKPKLLTLLPCIFKCVC--------------------HSHVSVRLAASRCITSMAK-------SMTINVMAAVV---- 1327 (1806)
Q Consensus 1279 ~~l~~~~~~llp~~~~~l~--------------------~~~~~vR~~aa~c~a~~~~-------~~~~~~~~~~~---- 1327 (1806)
+...+.+-++|--+++-.- .+..-+|-.|+.|++.+=. .+..+++..+|
T Consensus 266 ~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~ 345 (866)
T KOG1062|consen 266 ADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDP 345 (866)
T ss_pred ccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCc
Confidence 7766666666655543211 2344556666666666532 22222222222
Q ss_pred -------HHhhcccCCccchhhccchhHHHHHHHhhcCCcccCCcchhhhhhhhccccCCchhhhhh
Q 000237 1328 -------ENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLVVPLLRCMSDCDQSVRQSV 1387 (1806)
Q Consensus 1328 -------~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~py~~~l~~pll~~msd~~~~vr~~~ 1387 (1806)
..|+-=|.|+. +.-|.-|.|+++.++.. ..+..++--++..|..+|++.+...
T Consensus 346 ~avqrHr~tIleCL~DpD-~SIkrralELs~~lvn~------~Nv~~mv~eLl~fL~~~d~~~k~~~ 405 (866)
T KOG1062|consen 346 TAVQRHRSTILECLKDPD-VSIKRRALELSYALVNE------SNVRVMVKELLEFLESSDEDFKADI 405 (866)
T ss_pred HHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 12334444443 23344567777776652 2334445555566666666655433
No 456
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=24.86 E-value=7e+02 Score=38.47 Aligned_cols=136 Identities=17% Similarity=0.153 Sum_probs=69.8
Q ss_pred ccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHH
Q 000237 1443 KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEK 1522 (1806)
Q Consensus 1443 k~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~k 1522 (1806)
...|-+-|++++..+.. ......++-=..|.|||.+..+++......... ....++.++|..-. ..+++.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-----~g~~v~glApT~~A---a~~L~~ 1086 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-----EQLQVIGLAPTHEA---VGELKS 1086 (1960)
T ss_pred cCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-----cCCeEEEEeChHHH---HHHHHh
Confidence 34789999999976532 222345666789999998886554433221110 01356666775432 233332
Q ss_pred hhccCCceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChhhHHHHHHHHh-hhc
Q 000237 1523 FIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-KAA 1601 (1806)
Q Consensus 1523 f~~~p~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skalk~L-~A~ 1601 (1806)
.+ .... .+...+... ...+.... ...-.++|+||+-.+.+ ....+.++.. .+.
T Consensus 1087 -~g-----------~~a~--Ti~s~l~~~-------~~~~~~~~---~~~~~v~ivDEasMv~~--~~~~~l~~~~~~~~ 1140 (1960)
T TIGR02760 1087 -AG-----------VQAQ--TLDSFLTDI-------SLYRNSGG---DFRNTLFILDESSMVSN--FQLTHATELVQKSG 1140 (1960)
T ss_pred -cC-----------CchH--hHHHHhcCc-------ccccccCC---CCcccEEEEEccccccH--HHHHHHHHhccCCC
Confidence 11 1000 011111100 00011000 22357999999999843 2333444333 466
Q ss_pred ceEEeccCCCCCC
Q 000237 1602 HRLILSGTPIQNN 1614 (1806)
Q Consensus 1602 ~RLlLTGTPIqNn 1614 (1806)
.|++|.|=+-|=.
T Consensus 1141 ak~vlvGD~~QL~ 1153 (1960)
T TIGR02760 1141 SRAVSLGDIAQLQ 1153 (1960)
T ss_pred CEEEEeCChhhcC
Confidence 8999999766543
No 457
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.85 E-value=82 Score=41.23 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=72.2
Q ss_pred HhhcCChhHHHHHHHHHHHHhhhhc----cHHHHHHHHHHhhcccCCccchhhccchhHHHHHHHhhcCCcccCCcchhh
Q 000237 1294 KCVCHSHVSVRLAASRCITSMAKSM----TINVMAAVVENAIPMLGDMTSVHARQGAGMLISLLVQGLGAELVPYAPLLV 1369 (1806)
Q Consensus 1294 ~~l~~~~~~vR~~aa~c~a~~~~~~----~~~~~~~~~~~~~p~l~~~~~~~~r~ga~~~~~~~~~~~~~~~~py~~~l~ 1369 (1806)
+.|.++.--=|.+||--+..+-+-. ..+-|+.+++.+.--+..+.....|.|...-+......+|.+..+|..-.+
T Consensus 7 r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv 86 (675)
T KOG0212|consen 7 RGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIV 86 (675)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhh
Confidence 3444444445888887777666533 334566666654444444444556668888888888899999999999999
Q ss_pred hhhhhccccCCchhhhhhhhhhhhcc
Q 000237 1370 VPLLRCMSDCDQSVRQSVTRSFASLV 1395 (1806)
Q Consensus 1370 ~pll~~msd~~~~vr~~~~~~fa~lv 1395 (1806)
.|++-+++|+|..+|-.|-.+.-.+.
T Consensus 87 ~Pv~~cf~D~d~~vRyyACEsLYNia 112 (675)
T KOG0212|consen 87 PPVLNCFSDQDSQVRYYACESLYNIA 112 (675)
T ss_pred HHHHHhccCccceeeeHhHHHHHHHH
Confidence 99999999999999988766544433
No 458
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=24.75 E-value=57 Score=43.59 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=34.8
Q ss_pred CceEEEEecChhHHHHHHhhhcCCcEEEeeHHHHHhhHhh--h-ccccceEEEEcccccccC
Q 000237 1528 LMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY--L-GQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1528 ~l~vliy~Gs~~~R~~l~~~l~~~dVVITSYe~Lr~di~~--L-~~i~w~~VILDEaH~IKN 1586 (1806)
.++..-|+|+. .....+++|+-.|+.+-..-.. + -...=..||+||||++-+
T Consensus 308 ~~~~CPYY~SR-------~avp~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlid 362 (821)
T KOG1133|consen 308 ELRGCPYYASR-------RAVPQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLID 362 (821)
T ss_pred hcCCCCchhhh-------hccccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHH
Confidence 34555567663 3457889999999998654221 1 123346899999999855
No 459
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.24 E-value=8.2e+02 Score=32.80 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=16.0
Q ss_pred EEEcCCCCchHHHHHHHHHHhH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~ 1489 (1806)
.+.-..|.|||..+..+.....
T Consensus 354 aLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 354 ALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4456789999988877766543
No 460
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=23.30 E-value=1.4e+02 Score=40.66 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=43.2
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccc-cHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST-LVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~S-Ll~qW~~Ei~kf 1523 (1806)
.|-+-|+++|.+ ..++.++.-..|.|||.+.+.-++++...... ....+|+|+... ....-.+.+.+.
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v-----~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-----QARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-----CHHHeeeEechHHHHHHHHHHHHHH
Confidence 477899999964 24556777789999999999988887753211 114567766632 333344444443
No 461
>CHL00206 ycf2 Ycf2; Provisional
Probab=23.17 E-value=2.1e+02 Score=43.07 Aligned_cols=41 Identities=7% Similarity=0.190 Sum_probs=29.1
Q ss_pred CceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHH
Q 000237 1465 LHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWA 1517 (1806)
Q Consensus 1465 ~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~ 1517 (1806)
.|.+|.-.+|.|||+.|=|++.... -|.+-|....++..|.
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es~------------VPFIsISgs~fl~~~~ 1671 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNSY------------VPFITVFLNKFLDNKP 1671 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhcC------------CceEEEEHHHHhhccc
Confidence 3558889999999998877765311 4666666677777763
No 462
>PRK05748 replicative DNA helicase; Provisional
Probab=23.07 E-value=5.9e+02 Score=32.89 Aligned_cols=110 Identities=14% Similarity=0.084 Sum_probs=61.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhhccCCceEE-EEecC--hhHHHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFIDVSLMSTL-QYVGS--AQDRIA 1543 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~~~p~l~vl-iy~Gs--~~~R~~ 1543 (1806)
.+++--+|.|||.-++-++........ .+++++..---..+....+.... ..+... +..|. ..+...
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g--------~~v~~fSlEms~~~l~~R~l~~~--~~v~~~~i~~~~l~~~e~~~ 275 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTD--------KNVAIFSLEMGAESLVMRMLCAE--GNIDAQRLRTGQLTDDDWPK 275 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCC--------CeEEEEeCCCCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHHHHH
Confidence 489999999999999888765432111 57888887666666666553222 111111 11121 111111
Q ss_pred H---HhhhcCCcEEEe-----eHHHHHhhHhhhc-cc-cceEEEEcccccccC
Q 000237 1544 L---REQFDKHNVIIT-----SYDVVRKDADYLG-QL-LWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1544 l---~~~l~~~dVVIT-----SYe~Lr~di~~L~-~i-~w~~VILDEaH~IKN 1586 (1806)
+ ...+.+..+.|. |-+.++..+..+. .. ..++||+|=-|.++.
T Consensus 276 ~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~ 328 (448)
T PRK05748 276 LTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQG 328 (448)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCC
Confidence 1 123344555553 3445555544443 23 578999999998863
No 463
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=22.93 E-value=2.7e+02 Score=34.02 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=19.6
Q ss_pred ce-EEEcCCCCchHHHHHHHHHHhH
Q 000237 1466 HG-ILCDDMGLGKTLQASAIVASDI 1489 (1806)
Q Consensus 1466 gG-ILADdMGLGKTlqaIalia~l~ 1489 (1806)
|. ++.-+-|.|||..+..+...+.
T Consensus 27 ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 27 HAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred ceEEeECCCCCCHHHHHHHHHHHHc
Confidence 45 7889999999999988876543
No 464
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.61 E-value=8.2e+02 Score=31.56 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=27.2
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEecc----ccHHHHHHHHH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS----TLVGHWAFEIE 1521 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~----SLl~qW~~Ei~ 1521 (1806)
.++-..|.|||..+..+.......+ .++.+|+-. .-+.||..-.+
T Consensus 210 ~lvGptGvGKTTt~akLA~~l~~~g---------~~V~lItaDtyR~gAveQLk~yae 258 (407)
T PRK12726 210 SLIGQTGVGKTTTLVKLGWQLLKQN---------RTVGFITTDTFRSGAVEQFQGYAD 258 (407)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC---------CeEEEEeCCccCccHHHHHHHHhh
Confidence 4556789999988877776543211 355555542 23667765433
No 465
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=22.55 E-value=2.2e+02 Score=35.51 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=59.1
Q ss_pred cCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcC-CccCCCcEEEEe----ccccHHHHHHHHHHhhccC-CceEEEEec
Q 000237 1463 FKLHGILCDDMGLGKTLQASAIVASDIAERRASN-SIEEIHPSLIIC----PSTLVGHWAFEIEKFIDVS-LMSTLQYVG 1536 (1806)
Q Consensus 1463 ~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~-~~~~~~ptLIVc----P~SLl~qW~~Ei~kf~~~p-~l~vliy~G 1536 (1806)
.+-+.||+-+-|+|||...|-+...+..-+..-. ...+.+.+|+|. |.+++..-..-...+.=.| +++.+....
T Consensus 88 ~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd 167 (402)
T COG3598 88 KGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTD 167 (402)
T ss_pred cCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccc
Confidence 3445589899999999988777655433221111 223346777765 3445544433333332001 111111100
Q ss_pred ChhHHHHHHhhhcCCcEEEeeHHHHHhhHhhhccccceEEEEcccccccChh
Q 000237 1537 SAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSK 1588 (1806)
Q Consensus 1537 s~~~R~~l~~~l~~~dVVITSYe~Lr~di~~L~~i~w~~VILDEaH~IKN~~ 1588 (1806)
+...-...|+ +.. -.+++-...+.+.++++||+|-.-.+-..+
T Consensus 168 -------~~Gaa~~~d~-l~p-kl~rRfek~~~Q~rp~~vViDp~v~f~~G~ 210 (402)
T COG3598 168 -------VSGAADESDV-LSP-KLYRRFEKILEQKRPDFVVIDPFVAFYEGK 210 (402)
T ss_pred -------cccCCCcccc-ccH-HHHHHHHHHHHHhCCCeEEEcchhhhcCCc
Confidence 0000011122 233 555666667778889999999765554333
No 466
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=22.09 E-value=3.9e+02 Score=32.34 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=17.7
Q ss_pred EEEcCCCCchHHHHHHHHHHhHH
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~ 1490 (1806)
+++-..|.|||.++..++..+..
T Consensus 198 ~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 198 ALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 45568999999988887766543
No 467
>PRK08939 primosomal protein DnaI; Reviewed
Probab=21.76 E-value=3.7e+02 Score=33.10 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=19.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~ 1490 (1806)
-+|.=+.|.|||..+.|+...+..
T Consensus 159 l~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 159 LYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 367779999999999998877653
No 468
>PRK08840 replicative DNA helicase; Provisional
Probab=21.59 E-value=7.9e+02 Score=32.16 Aligned_cols=110 Identities=16% Similarity=0.191 Sum_probs=60.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhh-ccCCceEEEEec--ChhHHHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI-DVSLMSTLQYVG--SAQDRIA 1543 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~-~~p~l~vliy~G--s~~~R~~ 1543 (1806)
.|+|--+|.|||.-++-++....... ..|+++...---..++...+-... +.+.-+. ..| +..+...
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~--------~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i--~~~~l~~~e~~~ 289 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQ--------DKPVLIFSLEMPAEQLMMRMLASLSRVDQTKI--RTGQLDDEDWAR 289 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhC--------CCeEEEEeccCCHHHHHHHHHHhhCCCCHHHH--hcCCCCHHHHHH
Confidence 39999999999999877765433211 157888877666666666544332 1111111 112 1222222
Q ss_pred HH---hhh-cCCcEEEe-----eHHHHHhhHhhhcc-c-cceEEEEcccccccC
Q 000237 1544 LR---EQF-DKHNVIIT-----SYDVVRKDADYLGQ-L-LWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1544 l~---~~l-~~~dVVIT-----SYe~Lr~di~~L~~-i-~w~~VILDEaH~IKN 1586 (1806)
+. ..+ ....+.|. |.+.++..+..+.. . ..++||+|=-|.++.
T Consensus 290 ~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~ 343 (464)
T PRK08840 290 ISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRV 343 (464)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCC
Confidence 21 222 23455553 34455544444432 2 368999999998863
No 469
>cd08802 Death_UNC5B Death domain found in Uncoordinated-5B. Death Domain (DD) found in Uncoordinated-5B (UNC5B). UNC5B is part of the UNC-5 homolog family. It is a receptor for the secreted netrin-1 and plays a role in axonal guidance, angiogenesis, and apoptosis. UNC5B signaling is involved in the netrin-1-induced proliferation and migration of renal proximal tubular cells. It is also required for vascular patterning during embryonic development, and its activation inhibits sprouting angiogenesis. UNC5 proteins are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activatio
Probab=21.53 E-value=54 Score=32.99 Aligned_cols=22 Identities=41% Similarity=0.794 Sum_probs=19.4
Q ss_pred cchhhh---hhHHHHHHHHHhcCCC
Q 000237 314 VWEVRH---GSVMALREILTHHGAS 335 (1806)
Q Consensus 314 ~WEvRH---GAa~gLREilk~hg~~ 335 (1806)
.||.|| |+.-.|.++|+..|..
T Consensus 52 ~WE~~~~~~~~v~~L~~~L~~mgR~ 76 (84)
T cd08802 52 LWEARHQDDGDLNSLASALEEMGKS 76 (84)
T ss_pred HHHhcCCCcccHHHHHHHHHHcCcc
Confidence 499999 9999999999988753
No 470
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=21.50 E-value=1.6e+02 Score=37.48 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=18.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHH
Q 000237 1464 KLHGILCDDMGLGKTLQASAIVA 1486 (1806)
Q Consensus 1464 ~~gGILADdMGLGKTlqaIalia 1486 (1806)
+.|.+|.-..|.|||..+-++..
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34568889999999998866654
No 471
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=21.37 E-value=3.2e+02 Score=37.42 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=52.2
Q ss_pred ccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEec-cccHHHHHHHHHHh
Q 000237 1445 TLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-STLVGHWAFEIEKF 1523 (1806)
Q Consensus 1445 ~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP-~SLl~qW~~Ei~kf 1523 (1806)
-|..-|+.+...+.... -.|+--.+|.|||.+++-++..+...... ....-|.||||= .+.+.|.-.-+..+
T Consensus 378 ildsSq~~A~qs~ltye----lsliqgppGTgkt~vtlkav~tLL~n~s~---~~~~epIlvvC~Tnhavdq~ligiy~~ 450 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYE----LSLIQGPPGTGKTLVTLKAVDTLLLNSSG---YTEPEPILVVCLTNHAVDQYLIGIYYH 450 (1025)
T ss_pred eecHHHHHHHHHHhhhh----hheeecCCCCCceeehHHHHHHHHhcccc---cccccceeeeehhhHHHHHHHHHHHhc
Confidence 46668999887764322 24777799999999999988877764422 233479999997 56888887777653
No 472
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=21.36 E-value=2.1e+02 Score=39.73 Aligned_cols=111 Identities=22% Similarity=0.382 Sum_probs=82.5
Q ss_pred hhhhHHHHhhhHHHHHhhcCChhHHHHHHHHHHHHhhhhccHHHHHHHHHHhhcccC----Ccc--chhhccchhHHHHH
Q 000237 1279 EALKPKLLTLLPCIFKCVCHSHVSVRLAASRCITSMAKSMTINVMAAVVENAIPMLG----DMT--SVHARQGAGMLISL 1352 (1806)
Q Consensus 1279 ~~l~~~~~~llp~~~~~l~~~~~~vR~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~----~~~--~~~~r~ga~~~~~~ 1352 (1806)
+.+.|.+-.++|.++.||.-+...+|-.+=+||-.+-...+ ..|+--+..++|.+- +.. ....|.-|..++.-
T Consensus 901 ~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~-tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~a 979 (1030)
T KOG1967|consen 901 QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE-TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNA 979 (1030)
T ss_pred HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc-ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHH
Confidence 66779999999999999999999999999999988765433 234444455555543 222 36789999999988
Q ss_pred HHhhcCCc-ccCCcchhhhhhhhccccCCchhhhhhhhh
Q 000237 1353 LVQGLGAE-LVPYAPLLVVPLLRCMSDCDQSVRQSVTRS 1390 (1806)
Q Consensus 1353 ~~~~~~~~-~~py~~~l~~pll~~msd~~~~vr~~~~~~ 1390 (1806)
+.+.+... ++||....+..+...++|....||.-|..+
T Consensus 980 L~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 980 LTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 87755444 778988877667777888877788766544
No 473
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=21.22 E-value=3.9e+02 Score=34.34 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHH
Q 000237 1452 EGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVA 1486 (1806)
Q Consensus 1452 eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia 1486 (1806)
..|+.+.-.. .|..+++.-+.|.|||..+-.+..
T Consensus 158 rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian 191 (416)
T PRK09376 158 RIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIAN 191 (416)
T ss_pred eeeeeecccc-cCceEEEeCCCCCChhHHHHHHHH
Confidence 3445544333 344455666899999976555443
No 474
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=21.15 E-value=4.8e+02 Score=36.05 Aligned_cols=20 Identities=40% Similarity=0.388 Sum_probs=16.5
Q ss_pred ceEEEcCCCCchHHHHHHHH
Q 000237 1466 HGILCDDMGLGKTLQASAIV 1485 (1806)
Q Consensus 1466 gGILADdMGLGKTlqaIali 1485 (1806)
+.||.=+.|.|||..+-++.
T Consensus 54 slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56899999999998776665
No 475
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.86 E-value=55 Score=42.64 Aligned_cols=130 Identities=22% Similarity=0.227 Sum_probs=70.1
Q ss_pred hhHHHHHHccCCCCCchHHHhHHhhhhhhHHHHHhhchh------------------hHHHHHHHHHH--hhcCCCCCCc
Q 000237 591 GYVLPACRAGLEDPDDDVRAVAADALIPTAAAIVALDGQ------------------TLHSIVMLLWD--ILLDLDDLSP 650 (1806)
Q Consensus 591 ~~Vl~a~~~GL~D~DDDVraVAA~~L~Pia~~~v~~~~~------------------~l~~il~~LWd--~L~~lDDLs~ 650 (1806)
.+.+|.++.-|..+.+||+-=|.-||==||..=...+.. .+..+-++.|- .|-.-.+=+|
T Consensus 151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 456778888899999999988888776555432222211 12233334441 1111133333
Q ss_pred chHHHHHHH---HHHhcC--chhhHHhhccccccccccchhcccccCCCCCCCCCCchhhhcccccccccccccchhhHH
Q 000237 651 STSSVMNLL---AEIYSQ--EEMIPKMVGATSKQEFDLNEVVRADDVGEGRDFQANPYMLSMLAPRLWPFMRHSITSVRH 725 (1806)
Q Consensus 651 St~svM~LL---a~l~s~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LvPRL~PFlrHsitsVR~ 725 (1806)
....|=-+| ..|.-+ ++|+.- ..--+.-+.++....-+-..-+..+|||-++|.|...+|+-
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~D-------------a~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~ 297 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTD-------------ACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVT 297 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHH-------------HHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccccc
Confidence 322222222 222211 122200 00111122233333333334678899999999999999999
Q ss_pred HHHHHHHH
Q 000237 726 SAIRTLER 733 (1806)
Q Consensus 726 a~l~tL~~ 733 (1806)
.+||++-.
T Consensus 298 PaLRaiGN 305 (514)
T KOG0166|consen 298 PALRAIGN 305 (514)
T ss_pred HHHhhccc
Confidence 99998877
No 476
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=20.83 E-value=75 Score=38.71 Aligned_cols=75 Identities=28% Similarity=0.241 Sum_probs=62.3
Q ss_pred chhhhHHHHHHHHhhcCChhhHHHHHHHHHhhccCCceeeecccccchhhhhhhhhhhHHhHHhhHHHHHHccCCCCCch
Q 000237 528 PVRETCAQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDD 607 (1806)
Q Consensus 528 PVRET~AQ~Lgall~~m~~~~v~~~~~iLl~~q~~~~WEvrHGgLLGiKYlvAVR~dll~~lL~~Vl~a~~~GL~D~DDD 607 (1806)
=||..++.+||-+..++ ..+...+..+..++.|++|...+..+.|.--. ..+++...+|.+.|-.
T Consensus 195 ~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~----------~~~~~l~~~l~~~~~~ 259 (335)
T COG1413 195 DVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVRKAALLALGEIGDE----------EAVDALAKALEDEDVI 259 (335)
T ss_pred HHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc----------hhHHHHHHHHhccchH
Confidence 58899999999998888 45566778888899999999999888776543 3467888899999999
Q ss_pred HHHhHHhhhh
Q 000237 608 VRAVAADALI 617 (1806)
Q Consensus 608 VraVAA~~L~ 617 (1806)
++..++..+.
T Consensus 260 ~~~~~~~~~~ 269 (335)
T COG1413 260 LALLAAAALG 269 (335)
T ss_pred HHHHHHHHhc
Confidence 9999998886
No 477
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=20.45 E-value=1.8e+02 Score=38.89 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=48.7
Q ss_pred ccccccchHHHHHHHHHHHHhhcCCceEEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHH
Q 000237 1441 ELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFE 1519 (1806)
Q Consensus 1441 ~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~E 1519 (1806)
.+-.++.+-|-+.++. ..+.--|+--..|.|||..++-=++++.+..+. .-..+++||+.|.-+.......
T Consensus 208 dIV~TIQkEQneIIR~-----ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~---~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 208 DIVETIQKEQNEIIRF-----EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG---PLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred HHHHHhhHhHHHHHhc-----cCCCeEEEecCCCCCchhHHHHHHHHHHhcccc---ccccCceEEEcCcHHHHHHHHH
Confidence 3556778888887742 222233677889999999998878877764432 2233789999998876655444
No 478
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.42 E-value=2.5e+02 Score=35.82 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=26.8
Q ss_pred EEEcCCCCchHHHHHHHHHHhHHHhhhcCCccCCCcEEEEeccccHHHHHHHHHHhh
Q 000237 1468 ILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFEIEKFI 1524 (1806)
Q Consensus 1468 ILADdMGLGKTlqaIalia~l~~~r~~~~~~~~~~ptLIVcP~SLl~qW~~Ei~kf~ 1524 (1806)
.+.-=-|.|||.++.-+..++.. +. .++.+||-.+-..---+.++.++
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kk-kG--------~K~~LvcaDTFRagAfDQLkqnA 152 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKK-KG--------YKVALVCADTFRAGAFDQLKQNA 152 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHh-cC--------CceeEEeecccccchHHHHHHHh
Confidence 34455799999766555443322 11 56777787554443344444444
No 479
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=20.41 E-value=1.7e+02 Score=34.24 Aligned_cols=24 Identities=21% Similarity=0.048 Sum_probs=18.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHhHH
Q 000237 1467 GILCDDMGLGKTLQASAIVASDIA 1490 (1806)
Q Consensus 1467 GILADdMGLGKTlqaIalia~l~~ 1490 (1806)
-.|+-.+|.|||..++.-......
T Consensus 8 IflG~apGVGKTy~ML~ea~~l~~ 31 (211)
T PF02702_consen 8 IFLGAAPGVGKTYAMLQEAHRLKE 31 (211)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 478999999999988776655443
No 480
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.37 E-value=6e+02 Score=35.34 Aligned_cols=78 Identities=9% Similarity=0.110 Sum_probs=44.2
Q ss_pred cceEEEEcccccccChhhHHHHHHHHh-----hhcceEEeccCCCCCChhhHHhhhhhh---CCC-----------CCCc
Q 000237 1572 LWNYCILDEGHIIKNSKSKITVAVKQL-----KAAHRLILSGTPIQNNITDLWSLFDFL---MPG-----------FLGT 1632 (1806)
Q Consensus 1572 ~w~~VILDEaH~IKN~~Sk~skalk~L-----~A~~RLlLTGTPIqNnl~ELwSLL~FL---~Pg-----------~Lgt 1632 (1806)
.+++||||=+=+..+. ......+..+ ....-+.|++|--...+.++..-|+.. .+. .+|.
T Consensus 263 ~~D~VLIDTAGRs~~d-~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~ 341 (767)
T PRK14723 263 DKHLVLIDTVGMSQRD-RNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGP 341 (767)
T ss_pred CCCEEEEeCCCCCccC-HHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccH
Confidence 3578899987655332 2244444443 223456788886555566666555533 221 2455
Q ss_pred hhHHHHHhccchhhcccc
Q 000237 1633 ERQFQATYGKPLVAARDS 1650 (1806)
Q Consensus 1633 ~~~F~~~f~kPi~~~r~~ 1650 (1806)
--.+...+..|+..-...
T Consensus 342 iL~i~~~~~lPI~yit~G 359 (767)
T PRK14723 342 ALDTVIRHRLPVHYVSTG 359 (767)
T ss_pred HHHHHHHHCCCeEEEecC
Confidence 556667777777654443
No 481
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=20.30 E-value=1.1e+02 Score=34.22 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=35.5
Q ss_pred ChHhHHHHHHhhhhcccCCChhHHHHHHHHHHHHHhcCC
Q 000237 38 HPQDLNSLLRKVSQYLRSKSWDTRVAAAHAIGAIAQNVK 76 (1806)
Q Consensus 38 hP~el~~LL~rv~~~LrSk~WdTRvAAa~Aig~I~~nv~ 76 (1806)
...+++.+..|+..+|+||+.+.|-++.+-+++++++-+
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~ 57 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS 57 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh
Confidence 356889999999999999999999999999999999854
No 482
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.24 E-value=2.3e+02 Score=40.56 Aligned_cols=230 Identities=20% Similarity=0.202 Sum_probs=118.2
Q ss_pred cCCCCCCCcchHHHHHhhhhhchHHHHHHHHHHHHHHHHHhh-cCCCC-------ChhHHHHHhhhhccC--CCCCCCcc
Q 000237 1091 SELPARLNPIILPLMASIKREQEEKLQEKAAEALAELIADCI-ARKPS-------PNDKLIKNICSLTSM--DPCETPQA 1160 (1806)
Q Consensus 1091 ~~LP~KLNPiIkpLMeSIK~EEn~~LQ~~sA~sla~Li~~~~-~~~~~-------p~~KIikNLc~flC~--D~~~tP~~ 1160 (1806)
..+|+++.+-.--+|+.|+.++.- .-+|||.-=+.+..... .-+.+ .+.|+||=.=.-+-. |+..+|+.
T Consensus 726 ~~~~~lp~~wLee~l~~i~~kt~~-itRRSaGlP~ll~al~~te~~~~~k~ll~r~~~~Ll~ia~~p~~~~~~~~~~p~V 804 (1417)
T KOG1810|consen 726 SRFPELPELWLEELLEKILAKTSG-ITRRSAGLPFLLTALVETELKLGMKELLPRCFCKLLKIAECPLPGEWGEGDEPRV 804 (1417)
T ss_pred cccccCcHHHHHHHHHHHHhhccc-chhccCCCCHHHHHHHHhhhcccchhhhHHHHHHHHHHhcCCCccccCCCcchhh
Confidence 468899999999999999998887 55666642222222222 11222 244444422222222 44445555
Q ss_pred ccCCCccccccccccccccccCcccccccccCCCccccccchhhhcccHHHHHHHHHH-Hhc----------------cc
Q 000237 1161 AAMGSMEIIDDQDFLSFGSSTGKQKSRAHMLAGGEDRSRVEGFISRRGSELALRHLCG-KFG----------------VS 1223 (1806)
Q Consensus 1161 ~~~~~~~~~~~~gilsl~~~~~~~~~~~~~~~~~~~~~~~~~~i~RrGA~~al~~l~~-~fg----------------~~ 1223 (1806)
+..+..+.+-..-+|+-...+- .. ++-..+. +-=...----|.-|++.+++|-. .|| -.
T Consensus 805 HA~NvmkaIf~~~~LS~~~sef-~s-~Al~lAi--~~fs~~~W~~RN~atlLfaALi~RvfGv~~s~~~~~~r~~~S~~~ 880 (1417)
T KOG1810|consen 805 HAMNVMKAIFTSSILSNERSEF-QS-RALRLAI--EGFSHDMWAERNSATLLFAALINRVFGVIRSRLCLDHRNRLSGLE 880 (1417)
T ss_pred hhHHHHHHHHccchhhHHHHHH-HH-HHHHHHH--HhcCchHHhhhhhHHHHHHHHHHHHHHhhhHHhhcccccccchhh
Confidence 4433222211111111100000 00 0000000 00000012236677777777754 366 35
Q ss_pred hhhhchhhHHHhhhhccCCCCCchhHHHhhhccCCChhHHHHHHHHHHHhhccCChhhhHHHHhhhHHHHHhhcCChhHH
Q 000237 1224 LFDKLPKLWDCLTEVLIPDGPSNKKKIILAIESVRDPQILINNIQLVRSIAPMLDEALKPKLLTLLPCIFKCVCHSHVSV 1303 (1806)
Q Consensus 1224 l~~~lP~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~lid~l~vl~~~~p~~~~~l~~~~~~llp~~~~~l~~~~~~v 1303 (1806)
.|+|.|.|.+++-.-|...... ... .++..++ |--.|=+|-.+.|.=..+-+--+....|.++.|..++.-.|
T Consensus 881 FFtkyp~L~~~ll~~Less~a~----~sg--s~q~s~a-L~piLl~LSrL~~~~~~~~~~~ls~F~p~l~ect~q~~~~v 953 (1417)
T KOG1810|consen 881 FFTKYPTLHPLLLTELESSDAQ----LSG--SEQSSLA-LWPILLMLSRLYPSAPRSATLGLSVFVPFLQECTCQSNLKV 953 (1417)
T ss_pred hhhcCccHHHHHHHHhhhhccC----CCc--ccCcccc-HHHHHHHHHhhcccCCccccCCchhhhHHHHHHHhhhhHHH
Confidence 6999999999888666321110 000 1111111 44444455555555444444455667899999999999999
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHhhcccCCc
Q 000237 1304 RLAASRCITSMAKSMTINVMAAVVENAIPMLGDM 1337 (1806)
Q Consensus 1304 R~~aa~c~a~~~~~~~~~~~~~~~~~~~p~l~~~ 1337 (1806)
|.|||+.+..+... ...-+..+++..+-.
T Consensus 954 RemAs~vl~~L~~~-----~~e~l~~~~dl~~~q 982 (1417)
T KOG1810|consen 954 REMASLVLLALVDA-----VLEDLRQVLDLKAPQ 982 (1417)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHhccccc
Confidence 99999999988766 233344556655544
No 483
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=20.11 E-value=1.7e+02 Score=35.61 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=22.9
Q ss_pred CCCchHHHHHHHHhcCCCcchhhhhhHHHHHHHHH
Q 000237 296 LWPFRSFVEQLILDMFDPVWEVRHGSVMALREILT 330 (1806)
Q Consensus 296 ~WPf~~~~e~L~~DLFdp~WEvRHGAa~gLREilk 330 (1806)
.|.-....-.+..+++|..|-+|==++..++++..
T Consensus 270 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 270 ALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 34444556667777777777777777777666543
No 484
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=20.08 E-value=4e+02 Score=27.73 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHHHHhccccccccCCCCCCCchhchhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc-CChhhHHHhh
Q 000237 721 TSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESNEEILQCSDRVWRLLVQ-SPVEDLEAAG 799 (1806)
Q Consensus 721 tsVR~a~l~tL~~ll~~~~~~~~~~~~~~~~W~~~i~~~~LR~vFQnlLlE~~~~I~~~s~~vW~~ll~-~~~~~~~~~~ 799 (1806)
..-|+.+|+.|..++..+.. . .....++++ -..|.. +|.+ +..+.++++|..+++ -+.+.+....
T Consensus 29 ~~ek~~~l~si~~lI~~~~~-~----------i~~~~pQI~-a~L~sa-l~~~-~l~~~al~~W~~fi~~L~~~~l~~ll 94 (107)
T PF08064_consen 29 IPEKKRALRSIEELIKLGGS-H----------ISSARPQIM-ACLQSA-LEIP-ELREEALSCWNCFIKTLDEEDLGPLL 94 (107)
T ss_pred HHHHHHHHHHHHHHHHHhHH-H----------HHHHHHHHH-HHHHHH-hCCh-hhHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 45688999999999986543 1 122445544 344444 4444 999999999999997 4455555544
Q ss_pred hhhHHH
Q 000237 800 GKFMSS 805 (1806)
Q Consensus 800 ~~~~~~ 805 (1806)
...+..
T Consensus 95 ~~~~~~ 100 (107)
T PF08064_consen 95 DQIFAI 100 (107)
T ss_pred HHHHHH
Confidence 443333
Done!