Query 000237
Match_columns 1806
No_of_seqs 408 out of 2554
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 19:15:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000237.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_14-17//hhsearch_pdb/000237hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oc3_A Helicase MOT1, MOT1; re 1.0 1 1 880.9 15.1 315 294-886 168-488 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 452.6 26.4 311 1435-1764 45-368 (644)
3 3mwy_W Chromo domain-containin 1.0 1 1 430.3 26.2 287 1439-1764 230-528 (800)
4 1z63_A Helicase of the SNF2/RA 1.0 1 1 392.3 26.7 291 1432-1765 25-317 (500)
5 3dmq_A RNA polymerase-associat 1.0 1 1 282.6 13.0 259 1440-1711 148-452 (968)
6 1wp9_A ATP-dependent RNA helic 1.0 1 1 191.5 18.6 173 1442-1629 6-184 (494)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 173.7 16.7 194 1442-1714 90-286 (472)
8 1rif_A DAR protein, DNA helica 1.0 1 1 165.5 12.8 166 1444-1628 112-279 (282)
9 4a2w_A RIG-I, retinoic acid in 1.0 1 1 165.1 19.2 178 1436-1622 237-429 (936)
10 4a2q_A RIG-I, retinoic acid in 1.0 1 1 162.9 19.7 177 1435-1620 236-427 (797)
No 1
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=1.00 E-value=1 Score=880.91 Aligned_cols=315 Identities=19% Similarity=0.291 Sum_probs=285.0
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 98997369999999830999602324557999999985078753025888998875210123331223343310124678
Q 000237 294 DGLWPFRSFVEQLILDMFDPVWEVRHGSVMALREILTHHGASAGVFMPELGPDGALNVEFKDKDSITMKREREIDLNVQV 373 (1806)
Q Consensus 294 ~g~WPf~~~~e~L~~dLFdp~WEvRHGAa~gLREilk~hg~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (1806)
.++|||+ |||+|++|||||.||+|||||||||||+|+||+||||...
T Consensus 168 ~~eWPfq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~-------------------------------- 214 (800)
T 3oc3_A 168 PIENVLD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIR-------------------------------- 214 (800)
T ss_dssp CCCSGGG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCC--------------------------------
T ss_pred CCCCHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEECC--------------------------------
T ss_conf 7777899-9999999852863346448999999999982657761010--------------------------------
Q ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999500001466799997645555667789976545336789888998778854466544467877689999972000
Q 000237 374 PADEPEPLLKKMKFEDAPPPLMDTMVSPVNCDGCNISIKVDDSGCNLPAGSVNGQLDLSSVKVEPESNLDGLSHPSKEAI 453 (1806)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (1806)
T Consensus 215 -------------------------------------------------------------------------------- 214 (800)
T 3oc3_A 215 -------------------------------------------------------------------------------- 214 (800)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 01476899999887664110127861157777899999878863634999889999987512358867893135323457
Q 000237 454 DILEPRGQSGEKGDFLNSETLKNLPENSELMNWLKLARHSWQKNCEFLQDCAIRFLCILSLDRFGDYVSDQVVAPVRETC 533 (1806)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~wLeDlaiRlLCVlaLDRFGDyVSDqVVAPVRET~ 533 (1806)
.|+ |||+|||||||||||||||||||||||||||
T Consensus 215 ------------------------------------------~N~----DLAvRLLCVLALDRFGDYVSDqVVAPVRETa 248 (800)
T 3oc3_A 215 ------------------------------------------VDS----KLFSKIYEILVTDKFNDFVDDRTVAPVRDAA 248 (800)
T ss_dssp ------------------------------------------CCT----THHHHHHHHHHHBCCBBCSSSSCBCHHHHHH
T ss_pred ------------------------------------------CCH----HHHHHHHHHHHHCCCCCCCCCEEEEEHHHHH
T ss_conf ------------------------------------------237----8999999999960202545681663048889
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 99999976207935699999999760458851221243100134555344367767765899998058999924899677
Q 000237 534 AQALGAAFKYMHPSLVYETLYILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLHGLLGYVLPACRAGLEDPDDDVRAVAA 613 (1806)
Q Consensus 534 AQ~Lgall~~m~~~~v~~v~~iLl~lq~~~~WEvrHGgLLGiKYlvAVR~dll~~lL~~Vl~a~~~GL~D~DDDVraVAA 613 (1806)
|||||++ +||+++ ..++..|+..+.+++|||||||||||||+ +|++.. |++|+++++.||+|+|||||||||
T Consensus 249 AQtLGaL-~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 249 AYLLSRI-YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HHHHHHH-TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHH-HHCCHH--HHHHHHHHHHCCCCCEEEHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 9999998-708916--78999998505788824122168999999----999998-888999999655796207999999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHCCCCCCC
Q ss_conf 64432499997416343999999999730079989846488999999982580014774202432111101000135678
Q 000237 614 DALIPTAAAIVALDGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMVGATSKQEFDLNEVVRADDVG 693 (1806)
Q Consensus 614 ~~L~Pia~~lv~~~~~~l~~il~~LWd~L~~lDDLS~St~svM~LLa~l~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1806)
++|+|+| .++.++.|+++|||||.++||||+||||||+|||+||++|. .+
T Consensus 321 etLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-------~a----------------- 370 (800)
T 3oc3_A 321 ELLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-------EL----------------- 370 (800)
T ss_dssp HHHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-------TC-----------------
T ss_pred HHHHHHC------CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-------CC-----------------
T ss_conf 9845330------66668999999999752002111226799999999980972-------12-----------------
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHCCCH
Q ss_conf 78777887011100134324455554034579999999999970111001237899998101046689999888714661
Q 000237 694 EGRDFQANPYMLSMLAPRLWPFMRHSITSVRHSAIRTLERLLEAGYKRMIAESSGGSFWPSFILGDTLRIVFQNLLLESN 773 (1806)
Q Consensus 694 ~~~~~~~~~~~l~~LvPRL~PFlrHsItsVR~a~l~tL~~ll~~~~~~~~~~~~~~~~W~~~i~~~~LR~vFQnlLlE~~ 773 (1806)
.. .+.|||||||||||+|||||+||++||.+|+ ++++|||||||+|||+|
T Consensus 371 ------~~---dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL---------------------~~~~LRLIFQNILLE~n 420 (800)
T 3oc3_A 371 ------SI---PPERLKDIFPCFTSPVPEVRTSILNMVKNLS---------------------EESIDFLVAEVVLIEEK 420 (800)
T ss_dssp ------CC---CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC---------------------CHHHHHHHHHHHHHCSC
T ss_pred ------CC---CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHCCC
T ss_conf ------34---7577877776561884799999999999997---------------------46699999999983883
Q ss_pred HHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 789998999999--986078034788422209989998506888877877422236887443146888875421025789
Q 000237 774 EEILQCSDRVWR--LLVQSPVEDLEAAGGKFMSSWIELATTPFGSSLDATKMFWPVALPRKSHFKAAAKMRAVKLENDSS 851 (1806)
Q Consensus 774 ~~I~~~s~~vW~--~ll~~~~~~~~~~~~~~~~~wl~L~mtP~g~~~d~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~~ 851 (1806)
++|+++|.+||+ ..| +..|++|+|||+|+| |++|++.+
T Consensus 421 eeIl~lS~~VWk~r~~L--------------l~~wi~L~MtPIGv~-----f~kPs~~~--------------------- 460 (800)
T 3oc3_A 421 DEIREMAIKLLKKRRDL--------------PKNLILHFMNVIGGS-----LYEPYSED--------------------- 460 (800)
T ss_dssp HHHHHHHHHHHHTCSCC--------------CHHHHHHHHHHTTSC-----SSSCCCTT---------------------
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHCCCCCCC-----CCCCCCCC---------------------
T ss_conf 89999999999988887--------------899999852868872-----33667766---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCHHHH----HHHHH
Q ss_conf 998999755688887742022177630243----55789
Q 000237 852 GSVDLPQERNGDTSTNSVKITVGSDLEMSV----TNTRV 886 (1806)
Q Consensus 852 ~~~~~~~~~n~d~~~~~~~~~~ggd~~lv~----~~tRi 886 (1806)
...||+|++ |+. ||++++| +++||
T Consensus 461 -----~~~hnVD~~-----M~~-GDI~LvG~dviirsRi 488 (800)
T 3oc3_A 461 -----DFVSYEDLY-----FTK-SGINVVGKDEILKNRC 488 (800)
T ss_dssp -----TCSSCCTTT-----SSH-HHHHHHCHHHHHHHHH
T ss_pred -----CCCCCCCHH-----HHC-CCCCCCCHHHHHHHHH
T ss_conf -----643245312-----330-7874012889987547
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=452.64 Aligned_cols=311 Identities=31% Similarity=0.472 Sum_probs=263.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH-----HCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
Q ss_conf 876671002345168999999999976-----038763998478983699999999996998631277568885899936
Q 000237 1435 DYKLGTELKVTLRRYQQEGINWLAFLK-----RFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP 1509 (1806)
Q Consensus 1435 ~~~iP~~lk~~LRpYQ~eGV~wL~~l~-----~~~~gGILADDMGLGKTlQaIalIa~l~~~r~~~~~~~~~~ptLIVcP 1509 (1806)
...+++.+...|||||++|++||+... ..+.||||||+||+|||+|+|+++..+...... ..+..+++|||||
T Consensus 45 ~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~--~~p~~~~~LiV~P 122 (644)
T 1z3i_X 45 HVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD--CKPEIDKVIVVSP 122 (644)
T ss_dssp CEECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT--SSCSCSCEEEEEC
T ss_pred EEEECHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC--CCCCCCCEEEEEC
T ss_conf 17518564003519999999999984233544588875961078742999999999999974866--5677785799965
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEEC-CHHHHHH-HHHHH------CCCCEEEEEHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 610799999999962259865999936-8467999-99520------377499952999983076540234108997155
Q 000237 1510 STLVGHWAFEIEKFIDVSLMSTLQYVG-SAQDRIA-LREQF------DKHNVIITSYDVVRKDADYLGQLLWNYCILDEG 1581 (1806)
Q Consensus 1510 ~SLv~qW~~Ei~kf~~~p~l~vlvy~G-s~~~R~~-l~~~l------~~~dVVITSYe~lr~di~~L~~i~w~~VILDEa 1581 (1806)
.+++.||.+|+.+|++. .+.++.+.+ ....+.. +.... ..++|+|+||++++.+.+.+....|++||+|||
T Consensus 123 ~sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEa 201 (644)
T 1z3i_X 123 SSLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEG 201 (644)
T ss_dssp HHHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTG
T ss_pred HHHHHHHHHHHHHHCCC-CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 89988799999997588-72599980898899999999998733777787579963899876578750488657998786
Q ss_pred CCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCCCCCCHHHHHHHH
Q ss_conf 43458022899999994301368711678989945678555310779887146899874150100136678734588799
Q 000237 1582 HIIKNSKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGV 1661 (1806)
Q Consensus 1582 H~IKN~~Sk~skAlk~L~A~~RLlLTGTPIqN~l~ELwSLl~FL~Pg~Lgs~~~F~~~f~kpi~~~rd~~~s~ke~e~g~ 1661 (1806)
|++||..++.++++..+++.+||+|||||+||++.|||++++|++|+++++...|.++|..|+..+++...+..+...+.
T Consensus 202 H~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~ 281 (644)
T 1z3i_X 202 HRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGE 281 (644)
T ss_dssp GGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHH
T ss_pred EECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHHH
T ss_conf 22478045999999855567379984673458899999999861887689999999863261541677677888999999
Q ss_pred HHHHHHHHHHCCEEEEEEHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCC
Q ss_conf 99999999641514666134551079996899999369999999999999768699875432100111016898645322
Q 000237 1662 LAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKA 1741 (1806)
Q Consensus 1662 ~ale~L~k~L~PfiLRRtKedVl~dLPpKie~~v~v~LSp~Qk~lYe~l~~~~~~~~i~s~~~~~~~~~~~~~~~~s~~s 1741 (1806)
..+.+|+..+.||++||+|+++..+||+|++++++|+||+.|+++|+.+..... ... ..... +.
T Consensus 282 ~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~----------~~~--~~~~g----~~ 345 (644)
T 1z3i_X 282 QKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAK----------PVE--SLQTG----KI 345 (644)
T ss_dssp HHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHC----------GGG--SSCTT----CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHH----------HHH--HHHCC----CC
T ss_conf 999999999889998710876764279836999983799899999999999899----------999--87627----62
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 89999999999996069225579
Q 000237 1742 STHVFQALQYLLKLCSHPLLVLG 1764 (1806)
Q Consensus 1742 ~~~VlqaL~~LRkICnHP~LV~~ 1764 (1806)
...++..++.|||+||||.|+..
T Consensus 346 ~~~~l~~l~~Lrk~c~hp~l~~~ 368 (644)
T 1z3i_X 346 SVSSLSSITSLKKLCNHPALIYE 368 (644)
T ss_dssp CHHHHHHHHHHHHHHHCTHHHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 14599999999999579998888
No 3
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=430.28 Aligned_cols=287 Identities=32% Similarity=0.535 Sum_probs=245.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHH
Q ss_conf 71002345168999999999976038763998478983699999999996998631277568885899936610799999
Q 000237 1439 GTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAF 1518 (1806)
Q Consensus 1439 P~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADDMGLGKTlQaIalIa~l~~~r~~~~~~~~~~ptLIVcP~SLv~qW~~ 1518 (1806)
|.....+|||||++|++||.+.+..+.+|||||+||+|||+|+|+++..+...+... +|+|||||.+++.||.+
T Consensus 230 ~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~------~~~LIV~P~sll~qW~~ 303 (800)
T 3mwy_W 230 PFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQN------GPHIIVVPLSTMPAWLD 303 (800)
T ss_dssp TTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCC------SCEEEECCTTTHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCC------CCEEEEECCHHHHHHHH
T ss_conf 865799758999999999999851389989982787532999999999999860779------98899988038999999
Q ss_pred HHHHHHCCCCCEEEEEECCHHHHHHHHH------------HHCCCCEEEEEHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 9999622598659999368467999995------------2037749995299998307654023410899715543458
Q 000237 1519 EIEKFIDVSLMSTLQYVGSAQDRIALRE------------QFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKN 1586 (1806)
Q Consensus 1519 Ei~kf~~~p~l~vlvy~Gs~~~R~~l~~------------~l~~~dVVITSYe~lr~di~~L~~i~w~~VILDEaH~IKN 1586 (1806)
||.+|+ |.+++..|.|....+...+. ....++|+||||+++.++...+..+.|++||+||||++||
T Consensus 304 E~~~~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 304 TFEKWA--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKN 381 (800)
T ss_dssp HHHHHS--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCC
T ss_pred HHHHHC--CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEHHHHHHHCC
T ss_conf 999977--996499982777778898887762263001344566788990699998649998337732564134444147
Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 02289999999430136871167898994567855531077988714689987415010013667873458879999999
Q 000237 1587 SKSKITVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEA 1666 (1806)
Q Consensus 1587 ~~Sk~skAlk~L~A~~RLlLTGTPIqN~l~ELwSLl~FL~Pg~Lgs~~~F~~~f~kpi~~~rd~~~s~ke~e~g~~ale~ 1666 (1806)
..++.++++..+++.+||+|||||++|++.|||++++||+|+.|+....|...... ......+..
T Consensus 382 ~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~---------------~~~~~~~~~ 446 (800)
T 3mwy_W 382 AESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD---------------EEQEEYIHD 446 (800)
T ss_dssp SSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCT---------------THHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCC---------------HHHHHHHHH
T ss_conf 10199999997522438972278577999999999998586636743442322231---------------468999999
Q ss_pred HHHHHCCEEEEEEHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 99964151466613455107999689999936999999999999976869987543210011101689864532289999
Q 000237 1667 LHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVF 1746 (1806)
Q Consensus 1667 L~k~L~PfiLRRtKedVl~dLPpKie~~v~v~LSp~Qk~lYe~l~~~~~~~~i~s~~~~~~~~~~~~~~~~s~~s~~~Vl 1746 (1806)
|+..+.||++||+|.++..+||++.+..++|+|++.|+++|+.+..+.. ..+.. +.. .....++
T Consensus 447 L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~----------~~l~~--~~~----~~~~~~l 510 (800)
T 3mwy_W 447 LHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNY----------SALTA--GAK----GGHFSLL 510 (800)
T ss_dssp HHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCC----------C----------------CTHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHH----------HHHHH--CCC----CCHHHHH
T ss_conf 9999757775320876643168827999970799999999999999999----------99861--035----4544699
Q ss_pred HHHHHHHHHHCCCCCCCC
Q ss_conf 999999996069225579
Q 000237 1747 QALQYLLKLCSHPLLVLG 1764 (1806)
Q Consensus 1747 qaL~~LRkICnHP~LV~~ 1764 (1806)
..++.||++||||.|+..
T Consensus 511 ~~l~~Lrk~~~hp~l~~~ 528 (800)
T 3mwy_W 511 NIMNELKKASNHPYLFDN 528 (800)
T ss_dssp HHHHHHHHHHHCGGGSSS
T ss_pred HHHHHHHHHHCCHHHHCC
T ss_conf 999999987358654235
No 4
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=392.28 Aligned_cols=291 Identities=34% Similarity=0.655 Sum_probs=247.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 99987667100234516899999999997603876399847898369999999999699863127756888589993661
Q 000237 1432 HIDDYKLGTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPST 1511 (1806)
Q Consensus 1432 ~i~~~~iP~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADDMGLGKTlQaIalIa~l~~~r~~~~~~~~~~ptLIVcP~S 1511 (1806)
..+++. |..++.+|||||++|++|+......+.+|||||+||+|||+++++++........ .+++|||||.+
T Consensus 25 ~~~~~~-p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-------~~~~LIv~P~~ 96 (500)
T 1z63_A 25 SFQLLE-PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-------LTPSLVICPLS 96 (500)
T ss_dssp -CCCCC-CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-------CSSEEEEECST
T ss_pred CCCCCC-CHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-------CCCEEEECCHH
T ss_conf 776679-8332003369999999999997417998899808997389999999998875589-------99789990389
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 07999999999622598659999368467999995203774999529999830765402341089971554345802289
Q 000237 1512 LVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKI 1591 (1806)
Q Consensus 1512 Lv~qW~~Ei~kf~~~p~l~vlvy~Gs~~~R~~l~~~l~~~dVVITSYe~lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~ 1591 (1806)
++.||.+|+.+|+ +.+++..+.|.... .....++|+|+||+++.++.. +....|+++|+||+|++||..++.
T Consensus 97 l~~qw~~e~~~~~--~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~ 168 (500)
T 1z63_A 97 VLKNWEEELSKFA--PHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKI 168 (500)
T ss_dssp THHHHHHHHHHHC--TTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHH
T ss_pred HHHHHHHHHHHHC--CCCEEEEEECCCHH-----CCCCCCCEEEEEHHHHHCCCH-HCCCCCCEEEEECCCCCCCHHHHH
T ss_conf 9999999999977--99559997267021-----003577689963799726302-117872879980841017876899
Q ss_pred HHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999943013687116789899456785553107798871468998741501001366787345887999999999964
Q 000237 1592 TVAVKQLKAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQV 1671 (1806)
Q Consensus 1592 skAlk~L~A~~RLlLTGTPIqN~l~ELwSLl~FL~Pg~Lgs~~~F~~~f~kpi~~~rd~~~s~ke~e~g~~ale~L~k~L 1671 (1806)
++++..+++.+||+|||||++|++.|+|++++|+.|+.+++...|.+.|..|+..+. ....+.|+..+
T Consensus 169 ~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~------------~~~~~~l~~~l 236 (500)
T 1z63_A 169 FKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD------------NMAKEELKAII 236 (500)
T ss_dssp HHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC------------HHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC------------HHHHHHHHHHH
T ss_conf 999996004718997467777999999999998587757998999998525111466------------88999999997
Q ss_pred CCEEEEEEHHH--HHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 15146661345--5107999689999936999999999999976869987543210011101689864532289999999
Q 000237 1672 MPFLLRRTKDE--VLSDLPEKIIQDRYCDLSAVQLKLYEKFSGSQAKQEISSMVKVDESADKGEGNNVSAKASTHVFQAL 1749 (1806)
Q Consensus 1672 ~PfiLRRtKed--Vl~dLPpKie~~v~v~LSp~Qk~lYe~l~~~~~~~~i~s~~~~~~~~~~~~~~~~s~~s~~~VlqaL 1749 (1806)
.||++||+|.+ +..+||++.+..++|+|++.|++.|+.+..... ...... .+ . .....++..+
T Consensus 237 ~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~----------~~~~~~-~~--~--~~~~~~~~~l 301 (500)
T 1z63_A 237 SPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLF----------NNIDSV-TG--I--KRKGMILSTL 301 (500)
T ss_dssp TTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHT----------TTTTTC-CT--H--HHHHHHHHHH
T ss_pred HHHEEEECCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHH----------HHHHHH-HC--C--CCHHHHHHHH
T ss_conf 6674550255424112299975899981899999999999999999----------999864-23--2--1067999999
Q ss_pred HHHHHHHCCCCCCCCC
Q ss_conf 9999960692255799
Q 000237 1750 QYLLKLCSHPLLVLGD 1765 (1806)
Q Consensus 1750 ~~LRkICnHP~LV~~~ 1765 (1806)
.+||++|+||.++...
T Consensus 302 ~~lr~~~~~p~l~~~~ 317 (500)
T 1z63_A 302 LKLKQIVDHPALLKGG 317 (500)
T ss_dssp HHHHHHTTCTHHHHCS
T ss_pred HHHHHHHCCHHHHCCC
T ss_conf 9999881799884385
No 5
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=282.62 Aligned_cols=259 Identities=21% Similarity=0.264 Sum_probs=192.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHH
Q ss_conf 10023451689999999999760387639984789836999999999969986312775688858999366107999999
Q 000237 1440 TELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPSTLVGHWAFE 1519 (1806)
Q Consensus 1440 ~~lk~~LRpYQ~eGV~wL~~l~~~~~gGILADDMGLGKTlQaIalIa~l~~~r~~~~~~~~~~ptLIVcP~SLv~qW~~E 1519 (1806)
...+.+|+|||++++.|+.. ..+.++||||+||+|||+++++++......+. .+++|||||.+|+.||..|
T Consensus 148 ~~~~~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-------~~rvLIVvP~sLl~Qw~~E 218 (968)
T 3dmq_A 148 RGQRTSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-------AERVLIIVPETLQHQWLVE 218 (968)
T ss_dssp SCCSSCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-------CCCEEEECCTTTHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-------CCEEEEEECHHHHHHHHHH
T ss_conf 57899970999999999997--05898898789997599999999999998189-------9829999578889999999
Q ss_pred HHHHHCCCCCEEEEEECCHHHHHHH--HHHHCCCCEEEEEHHHHHHHH---HHHCCCCCEEEEECCCCCCCCHHHHH---
Q ss_conf 9996225986599993684679999--952037749995299998307---65402341089971554345802289---
Q 000237 1520 IEKFIDVSLMSTLQYVGSAQDRIAL--REQFDKHNVIITSYDVVRKDA---DYLGQLLWNYCILDEGHIIKNSKSKI--- 1591 (1806)
Q Consensus 1520 i~kf~~~p~l~vlvy~Gs~~~R~~l--~~~l~~~dVVITSYe~lr~di---~~L~~i~w~~VILDEaH~IKN~~Sk~--- 1591 (1806)
+.+++ .+++.+|.|........ ...+..++|+|+||+++.++. ..+....|++||+||+|+++|..+..
T Consensus 219 ~~~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 219 MLRRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HHHHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred HHHHH---CCCEEEECCCHHHHHHHHCCCCCCCCCEEEECHHHHHHCHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCHHH
T ss_conf 99986---998799806205554320036445689899768998648788887641587789744467625888754299
Q ss_pred HHHHHHH--HHCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHC------CCC-CCCHH-------
Q ss_conf 9999994--3013687116789899456785553107798871468998741501001------366-78734-------
Q 000237 1592 TVAVKQL--KAAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAA------RDS-KCSAK------- 1655 (1806)
Q Consensus 1592 skAlk~L--~A~~RLlLTGTPIqN~l~ELwSLl~FL~Pg~Lgs~~~F~~~f~kpi~~~------rd~-~~s~k------- 1655 (1806)
++++..+ +++++|+|||||++|++.|+|++++|+.|+.+++...|...+....... ... ..+..
T Consensus 296 ~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~ 375 (968)
T 3dmq_A 296 YQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGE 375 (968)
T ss_dssp HHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTT
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99999986257858999768766987999999982593011898999999985788999999874267899889999998
Q ss_pred -----------------H---HHHHHHHHHHHHHH--HCCEEEEEEHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHH
Q ss_conf -----------------5---88799999999996--41514666134551079996899999369999999999999
Q 000237 1656 -----------------D---AEAGVLAMEALHKQ--VMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLKLYEKFS 1711 (1806)
Q Consensus 1656 -----------------e---~e~g~~ale~L~k~--L~PfiLRRtKedVl~dLPpKie~~v~v~LSp~Qk~lYe~l~ 1711 (1806)
+ .......+..+... ...+++|+++..+. .+|++..+.+.+++++.++..|+...
T Consensus 376 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~~ 452 (968)
T 3dmq_A 376 MIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVSG 452 (968)
T ss_dssp TTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC-CCCHHHEEEEECCCCHHHHHHHHHHH
T ss_conf 842033678875036222333799999999999861733265632265545-56711157523689999999999875
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=191.47 Aligned_cols=173 Identities=16% Similarity=0.158 Sum_probs=133.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC-CCHHHHHHHH
Q ss_conf 023451689999999999760387639984789836999999999969986312775688858999366-1079999999
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS-TLVGHWAFEI 1520 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADDMGLGKTlQaIalIa~l~~~r~~~~~~~~~~ptLIVcP~-SLv~qW~~Ei 1520 (1806)
...+|||||++++.|+.. + ++|++++||+|||++++.++....... ..++|||||. +|+.||.+|+
T Consensus 6 ~~~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~~--------~~~~liv~P~~~L~~q~~~~~ 72 (494)
T 1wp9_A 6 DLIQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTKY--------GGKVLMLAPTKPLVLQHAESF 72 (494)
T ss_dssp HHHCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHHS--------CSCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH----C-CEEEECCCCCCHHHHHHHHHHHHHHCC--------CCEEEEEECCHHHHHHHHHHH
T ss_conf 787863999999999961----9-989991899878999999999998647--------985999978889999999999
Q ss_pred HHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEHHHHHHHHH--HHCCCCCEEEEECCCCCCCCHHHHHH--HHHH
Q ss_conf 9962259865999936846799999520377499952999983076--54023410899715543458022899--9999
Q 000237 1521 EKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDAD--YLGQLLWNYCILDEGHIIKNSKSKIT--VAVK 1596 (1806)
Q Consensus 1521 ~kf~~~p~l~vlvy~Gs~~~R~~l~~~l~~~dVVITSYe~lr~di~--~L~~i~w~~VILDEaH~IKN~~Sk~s--kAlk 1596 (1806)
.+|++.+..++..+.|....... ...+..++|+|+||+.+..... .+....|+++|+||+|++++..+... +.+.
T Consensus 73 ~~~~~~~~~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~ 151 (494)
T 1wp9_A 73 RRLFNLPPEKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYK 151 (494)
T ss_dssp HHHBCSCGGGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHEEEEECCCCHHHH-HHHCCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 98747561116876077533556-65335798999639999999860871565410899978756688881999999997
Q ss_pred H-HHHCCEEEECCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9-43013687116789899456785553107798
Q 000237 1597 Q-LKAAHRLILSGTPIQNNITDLWSLFDFLMPGF 1629 (1806)
Q Consensus 1597 ~-L~A~~RLlLTGTPIqN~l~ELwSLl~FL~Pg~ 1629 (1806)
. .+..++++|||||. |+..+++.++.++.+..
T Consensus 152 ~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~ 184 (494)
T 1wp9_A 152 RQAKNPLVIGLTASPG-STPEKIMEVINNLGIEH 184 (494)
T ss_dssp HHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCE
T ss_pred HCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHE
T ss_conf 3288776999956998-88578999998507000
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=173.71 Aligned_cols=194 Identities=22% Similarity=0.290 Sum_probs=151.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC-CCHHHHHHHH
Q ss_conf 023451689999999999760387639984789836999999999969986312775688858999366-1079999999
Q 000237 1442 LKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS-TLVGHWAFEI 1520 (1806)
Q Consensus 1442 lk~~LRpYQ~eGV~wL~~l~~~~~gGILADDMGLGKTlQaIalIa~l~~~r~~~~~~~~~~ptLIVcP~-SLv~qW~~Ei 1520 (1806)
...+|+|||++++.++. .+.+++++++||+|||++++.++... . .++|||||. +|+.||.+++
T Consensus 90 ~~~~l~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~~----~--------~~~Lvl~P~~~L~~Q~~~~~ 153 (472)
T 2fwr_A 90 AEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL----S--------TPTLIVVPTLALAEQWKERL 153 (472)
T ss_dssp CCCCBCHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHHH----C--------SCEEEEESSHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHH----HCCCEEEEECCCCCHHHHHHHHHHHC----C--------CCEEEEECCHHHHHHHHHHH
T ss_conf 89986889999999999----65987999699998899999999980----9--------99999987999999999999
Q ss_pred HHHHCCCCCE-EEEEECCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9962259865-999936846799999520377499952999983076540234108997155434580228999999943
Q 000237 1521 EKFIDVSLMS-TLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQLK 1599 (1806)
Q Consensus 1521 ~kf~~~p~l~-vlvy~Gs~~~R~~l~~~l~~~dVVITSYe~lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skAlk~L~ 1599 (1806)
.+| + .+ +..+.|.... ..+|+|+||+.+......+. ..|+++|+||+|++.+.... +.+..+.
T Consensus 154 ~~~---~-~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~ 217 (472)
T 2fwr_A 154 GIF---G-EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSI 217 (472)
T ss_dssp GGG---C-GGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCC
T ss_pred HHC---C-CCCEEEECCCCCC---------CCCEEEEECHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHH--HHHHHCC
T ss_conf 967---9-9636998787677---------67789997689997799736-87778999897578976899--9997357
Q ss_pred HCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 01368711678989945678555310779887146899874150100136678734588799999999996415146661
Q 000237 1600 AAHRLILSGTPIQNNITDLWSLFDFLMPGFLGTERQFQATYGKPLVAARDSKCSAKDAEAGVLAMEALHKQVMPFLLRRT 1679 (1806)
Q Consensus 1600 A~~RLlLTGTPIqN~l~ELwSLl~FL~Pg~Lgs~~~F~~~f~kpi~~~rd~~~s~ke~e~g~~ale~L~k~L~PfiLRRt 1679 (1806)
+.++++|||||.+++..+ ..+...+.|.+.++.
T Consensus 218 ~~~~l~lSATp~~~~~~~-----------------------------------------------~~l~~~~~~~~~~~~ 250 (472)
T 2fwr_A 218 APFRLGLTATFEREDGRH-----------------------------------------------EILKEVVGGKVFELF 250 (472)
T ss_dssp CSEEEEEESCCCCTTSGG-----------------------------------------------GSHHHHTCCEEEECC
T ss_pred CCEEEEEECCCCCCCCHH-----------------------------------------------HHHHHHHCCEEEECC
T ss_conf 781899932766889778-----------------------------------------------999997298576547
Q ss_pred HHHHHCC-CCCCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 3455107-9996899999369999999999999768
Q 000237 1680 KDEVLSD-LPEKIIQDRYCDLSAVQLKLYEKFSGSQ 1714 (1806)
Q Consensus 1680 KedVl~d-LPpKie~~v~v~LSp~Qk~lYe~l~~~~ 1714 (1806)
..++... +++.....+.+++++.++..|+.+....
T Consensus 251 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (472)
T 2fwr_A 251 PDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVY 286 (472)
T ss_dssp HHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 898706767881899998589989999999999999
No 8
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=1.00 E-value=1 Score=165.55 Aligned_cols=166 Identities=16% Similarity=0.159 Sum_probs=124.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC-CCHHHHHHHHHH
Q ss_conf 3451689999999999760387639984789836999999999969986312775688858999366-107999999999
Q 000237 1444 VTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS-TLVGHWAFEIEK 1522 (1806)
Q Consensus 1444 ~~LRpYQ~eGV~wL~~l~~~~~gGILADDMGLGKTlQaIalIa~l~~~r~~~~~~~~~~ptLIVcP~-SLv~qW~~Ei~k 1522 (1806)
.+|++||.+++.++... .+++++++||+|||++++.++......+. +++|||||. +|+.||.+++.+
T Consensus 112 ~~l~~~Q~~ai~~~l~~----~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--------~~~lil~Pt~~L~~q~~~~l~~ 179 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN----RRRILNLPTSAGRSLIQALLARYYLENYE--------GKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp CCCCHHHHHHHHHHHHH----SEEEECCCTTSCHHHHHHHHHHHHHHHCS--------SEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHC----CCEEEECCCCCCCHHHHHHHHHHHHHCCC--------CEEEEEECCHHHHHHHHHHHHH
T ss_conf 67569999999999846----98599807999738999999999997689--------7599997979999999999998
Q ss_pred HHCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHH-HHC
Q ss_conf 6225986599993684679999952037749995299998307654023410899715543458022899999994-301
Q 000237 1523 FIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQLLWNYCILDEGHIIKNSKSKITVAVKQL-KAA 1601 (1806)
Q Consensus 1523 f~~~p~l~vlvy~Gs~~~R~~l~~~l~~~dVVITSYe~lr~di~~L~~i~w~~VILDEaH~IKN~~Sk~skAlk~L-~A~ 1601 (1806)
|...+...+..+.+...... ......+|+|+||+.+.+....+ ...|+++|+||+|++.+. .....+..+ ++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~ 253 (282)
T 1rif_A 180 YRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCM 253 (282)
T ss_dssp HTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCC
T ss_pred HCCCCCCEEEEEECCCCCHH---HHCCCCCEEEECHHHHHHHHHHH-HHHCCEEEEECCCCCCCC--CHHHHHHHHHCCC
T ss_conf 53545632799868985022---20358829997669987547878-863899999897037853--2999999741177
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 368711678989945678555310779
Q 000237 1602 HRLILSGTPIQNNITDLWSLFDFLMPG 1628 (1806)
Q Consensus 1602 ~RLlLTGTPIqN~l~ELwSLl~FL~Pg 1628 (1806)
++++|||||. |...+++.++.++.|-
T Consensus 254 ~~l~lSATp~-~~~~~~~~l~~l~g~i 279 (282)
T 1rif_A 254 FKFGLSGSLR-DGKANIMQYVGMFGEI 279 (282)
T ss_dssp EEEEECSSCC-TTSTTHHHHHHHHCEE
T ss_pred EEEEEECCCC-CCCHHHHHHHHHCCCC
T ss_conf 6999927999-8505799999861782
No 9
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=165.14 Aligned_cols=178 Identities=12% Similarity=0.153 Sum_probs=128.0
Q ss_pred CCCCCCC--CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC-CC
Q ss_conf 7667100--23451689999999999760387639984789836999999999969986312775688858999366-10
Q 000237 1436 YKLGTEL--KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICPS-TL 1512 (1806)
Q Consensus 1436 ~~iP~~l--k~~LRpYQ~eGV~wL~~l~~~~~gGILADDMGLGKTlQaIalIa~l~~~r~~~~~~~~~~ptLIVcP~-SL 1512 (1806)
+..|..+ ..+||+||.+++.++. .+.++|++++||+|||++.+..+........ ....+++|||||. .|
T Consensus 237 ~~~~~~l~~~~~~r~~Q~~ai~~il----~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~----~~~~~~vLvl~Pt~~L 308 (936)
T 4a2w_A 237 IGKPPPVYETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPV 308 (936)
T ss_dssp -----------CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHTTTTTCC----SSCCCCEEEECSSHHH
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHH----CCCCEEEEECCCCHHHHHHHHHHHHHHHHCC----CCCCCEEEEEECCHHH
T ss_conf 2376533478987799999999998----0998999969984599999999999997365----5689859999698999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH--H-CCCCCEEEEECCCCCCCCHHH
Q ss_conf 7999999999622598659999368467999995203774999529999830765--4-023410899715543458022
Q 000237 1513 VGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY--L-GQLLWNYCILDEGHIIKNSKS 1589 (1806)
Q Consensus 1513 v~qW~~Ei~kf~~~p~l~vlvy~Gs~~~R~~l~~~l~~~dVVITSYe~lr~di~~--L-~~i~w~~VILDEaH~IKN~~S 1589 (1806)
+.||..++.+|++...+++..++|....+.........++|+|+||+.+...... + .-..|+++|+||+|++.+..+
T Consensus 309 ~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~ 388 (936)
T 4a2w_A 309 YEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP 388 (936)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 99999999997121695599997996312578974169999994499999998717645336787999987313599866
Q ss_pred HHHHHHHHH-HH--------CCEEEECCCCCCCCHHHHHHHH
Q ss_conf 899999994-30--------1368711678989945678555
Q 000237 1590 KITVAVKQL-KA--------AHRLILSGTPIQNNITDLWSLF 1622 (1806)
Q Consensus 1590 k~skAlk~L-~A--------~~RLlLTGTPIqN~l~ELwSLl 1622 (1806)
....+..+ .. .++++|||||.+++..+++..+
T Consensus 389 -~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~ 429 (936)
T 4a2w_A 389 -YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETI 429 (936)
T ss_dssp -HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHH
T ss_pred -HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf -99999999998631378867399863885545402089999
No 10
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=162.92 Aligned_cols=177 Identities=13% Similarity=0.158 Sum_probs=128.1
Q ss_pred CCCCCCCC--CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC-CC
Q ss_conf 87667100--2345168999999999976038763998478983699999999996998631277568885899936-61
Q 000237 1435 DYKLGTEL--KVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERRASNSIEEIHPSLIICP-ST 1511 (1806)
Q Consensus 1435 ~~~iP~~l--k~~LRpYQ~eGV~wL~~l~~~~~gGILADDMGLGKTlQaIalIa~l~~~r~~~~~~~~~~ptLIVcP-~S 1511 (1806)
.+..|..+ ..+|||||.+++.++. .+.++|++++||+|||++.+..+......... ...+++||||| ..
T Consensus 236 ~~~~~~~~~g~~~l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~Lvl~Pt~~ 307 (797)
T 4a2q_A 236 GIGKPPPVYETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVP 307 (797)
T ss_dssp ------------CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHH
T ss_pred HHCCCHHHCCCCCCCHHHHHHHHHHH----HCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC----CCCCEEEEEECCHH
T ss_conf 52485442388999999999999998----09998999699972999999999999984665----67996999969899
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH--H-CCCCCEEEEECCCCCCCCHH
Q ss_conf 07999999999622598659999368467999995203774999529999830765--4-02341089971554345802
Q 000237 1512 LVGHWAFEIEKFIDVSLMSTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADY--L-GQLLWNYCILDEGHIIKNSK 1588 (1806)
Q Consensus 1512 Lv~qW~~Ei~kf~~~p~l~vlvy~Gs~~~R~~l~~~l~~~dVVITSYe~lr~di~~--L-~~i~w~~VILDEaH~IKN~~ 1588 (1806)
|+.||..++.+|++...+++..++|..............++|+|+||+.+...... + .-..|+++|+||+|++.+..
T Consensus 308 L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~ 387 (797)
T 4a2q_A 308 VYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 387 (797)
T ss_dssp HHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 99999999998614379469999699623246997407999999766999999982654651337789998863558876
Q ss_pred HHHHHHHHHH-HH--------CCEEEECCCCCCCCHHHHHH
Q ss_conf 2899999994-30--------13687116789899456785
Q 000237 1589 SKITVAVKQL-KA--------AHRLILSGTPIQNNITDLWS 1620 (1806)
Q Consensus 1589 Sk~skAlk~L-~A--------~~RLlLTGTPIqN~l~ELwS 1620 (1806)
. ....+..+ .. .++++|||||.+++..+++.
T Consensus 388 ~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~ 427 (797)
T 4a2q_A 388 P-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 427 (797)
T ss_dssp H-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHH
T ss_pred C-HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHH
T ss_conf 4-999999999976314788785999727755455224899
Done!