Query 000238
Match_columns 1805
No_of_seqs 4 out of 6
Neff 1.3
Searched_HMMs 29240
Date Tue Mar 26 16:00:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000238.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_18-22//hhsearch_pdb/000238hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n40_P P62 envelope glycoprote 1.0 1 1 9.3 1.0 12 1449-1460 241-252 (401)
2 2rrf_A Zinc finger FYVE domain 1.0 1 1 9.3 0.6 25 87-111 21-45 (141)
3 3j0f_I E2 envelope glycoprotei 1.0 1 1 9.1 0.6 13 1449-1461 180-192 (423)
4 2yew_C E2 envelope glycoprotei 1.0 1 1 8.9 0.8 12 1449-1460 178-189 (421)
5 2xfc_B E2 envelope glycoprotei 1.0 1 1 8.8 1.0 11 1449-1459 181-191 (423)
6 1j6w_A Autoinducer-2 productio 1.0 1 1 8.4 -4.2 36 551-586 43-82 (175)
7 4gua_A Non-structural polyprot 1.0 1 1 8.3 0.1 40 23-70 518-557 (670)
8 2c9l_Y EB1, zebra, BZLF1 trans 1.0 1 1 8.2 -0.3 11 287-297 53-63 (63)
9 3glw_Z Dynein intermediate cha 1.0 1 1 8.1 0.3 16 45-60 7-23 (28)
10 2ox7_A Hypothetical protein; s 1.0 1 1 8.0 0.2 17 1090-1106 135-151 (155)
No 1
>3n40_P P62 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 3n44_B* 3n41_B* 3n42_B* 3n43_B* 2xfb_B 3n44_A* 3n41_A* 3n42_A* 3n43_A*
Probab=1.00 E-value=1 Score=9.34 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=5.9
Q ss_pred HHHCCCCEEECC
Q ss_conf 731289702113
Q 000238 1449 MSKQGNDTYISP 1460 (1805)
Q Consensus 1449 mskqgndtyisp 1460 (1805)
||.+|+..||.|
T Consensus 241 ls~~~g~v~itp 252 (401)
T 3n40_P 241 MSQQSGNVKITV 252 (401)
T ss_dssp EEEETTEEEECC
T ss_pred EEECCCCEEEEC
T ss_conf 551378279954
No 2
>2rrf_A Zinc finger FYVE domain-containing protein 21; zfyve21, PH, unknown function; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=9.28 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 3322489873334201000123567
Q 000238 87 GETFLGSPSAVQVSIEDTCRVSKSS 111 (1805)
Q Consensus 87 GeSFL~SPSv~~v~~EeT~rvses~ 111 (1805)
|++|+-|+.-+--+..-.||.|.+|
T Consensus 21 GatF~Vs~~~sek~e~~vCrLS~nh 45 (141)
T 2rrf_A 21 GATFLVTFGNSEKPETMTCRLSNNQ 45 (141)
T ss_dssp CEEEEECCSSCCSCEEEEEEECTTS
T ss_pred CCEEEEECCCCCCCCEEEEEECCCE
T ss_conf 8569985167887705888726980
No 3
>3j0f_I E2 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1z8y_J
Probab=1.00 E-value=1 Score=9.14 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=8.0
Q ss_pred HHHCCCCEEECCC
Q ss_conf 7312897021132
Q 000238 1449 MSKQGNDTYISPV 1461 (1805)
Q Consensus 1449 mskqgndtyispv 1461 (1805)
||.||+..||.|-
T Consensus 180 ls~s~g~V~itpp 192 (423)
T 3j0f_I 180 LEESSGKVYAKPP 192 (423)
T ss_pred EEECCCCEEEECC
T ss_conf 8722881799679
No 4
>2yew_C E2 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=1.00 E-value=1 Score=8.94 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=6.4
Q ss_pred HHHCCCCEEECC
Q ss_conf 731289702113
Q 000238 1449 MSKQGNDTYISP 1460 (1805)
Q Consensus 1449 mskqgndtyisp 1460 (1805)
||.+|+..||.|
T Consensus 178 ls~s~g~v~itp 189 (421)
T 2yew_C 178 VSNTGKSYSLDP 189 (421)
T ss_dssp CBCCTTEEEECC
T ss_pred EEECCCCEEEEC
T ss_conf 440388179965
No 5
>2xfc_B E2 envelope glycoprotein; receptor binding, membrane fusion, icosahedral envelo; 9.00A {Chikungunya virus}
Probab=1.00 E-value=1 Score=8.77 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=6.2
Q ss_pred HHHCCCCEEEC
Q ss_conf 73128970211
Q 000238 1449 MSKQGNDTYIS 1459 (1805)
Q Consensus 1449 mskqgndtyis 1459 (1805)
||.||+..||.
T Consensus 181 ls~s~g~v~it 191 (423)
T 2xfc_B 181 MSQQSGNVKIT 191 (423)
T ss_dssp EEESSSSEEEC
T ss_pred EEECCCCEEEE
T ss_conf 44038807994
No 6
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=1.00 E-value=1 Score=8.45 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHHCCCCC
Q ss_conf 4579554678445410001335631247----55039864
Q 000238 551 QNKNASDLHDIPVLDEEAGETEGKDLEE----VIKTEPKG 586 (1805)
Q Consensus 551 ~NKN~~~L~~I~vLdeEa~~~EGk~Lee----V~~~~Pk~ 586 (1805)
||+..-.--+||-|+--...---..++. ||+++|-|
T Consensus 43 PN~e~m~~~~iHTlEHL~A~~lRnh~~~~~~~iId~sPMG 82 (175)
T 1j6w_A 43 PNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMG 82 (175)
T ss_dssp TTTCCCCHHHHHHHHHHHHHHHHHHHCBTTBEEEEEEECT
T ss_pred CCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 8822278742069999888887507567887699968967
No 7
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=1.00 E-value=1 Score=8.27 Aligned_cols=40 Identities=33% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 998644566430103664202686678873011012355421122212
Q 000238 23 PGSGHFDSTADETFSRELKKFQGTLNVPPDTVEYLGETKDMQAASDFG 70 (1805)
Q Consensus 23 ~~~~~~DaTADE~~~reLK~~~G~lN~PPet~EYl~~TK~MQvAsd~~ 70 (1805)
+.|||-||. |+.-+|---.--.++-||+-||--|+|-|++
T Consensus 518 lvrVhP~Ss--------L~gr~GyStt~Gk~~SyleGTkFHQ~A~d~A 557 (670)
T 4gua_A 518 LVWIHPDSC--------LKGRKGFSTTKGKLYSYFEGTKFHQAAKDMA 557 (670)
T ss_dssp CEECCTTCT--------TTTSTTEESSCSBSBCCCTTSTTHHHHHHHH
T ss_pred EEEECCCHH--------CCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 587388211--------0589886467784666305740667788899
No 8
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=1.00 E-value=1 Score=8.23 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q ss_conf 33654546852
Q 000238 287 DAEGIFPSTTD 297 (1805)
Q Consensus 287 ~a~~I~~st~D 297 (1805)
|.++|+|+|||
T Consensus 53 dvdsiip~t~d 63 (63)
T 2c9l_Y 53 DVDSIIPRTPD 63 (63)
T ss_dssp CHHHHSCCCCC
T ss_pred CCCCCCCCCCC
T ss_conf 61115789998
No 9
>3glw_Z Dynein intermediate chain; LC8, tctex, tctex-1, IC, dynein chain, entropy, allostery, chelate effect, multivalent., microtubule; 3.15A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=8.10 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=0.0
Q ss_pred CCCCCCC-CCHHCCCCC
Q ss_conf 8667887-301101235
Q 000238 45 GTLNVPP-DTVEYLGET 60 (1805)
Q Consensus 45 G~lN~PP-et~EYl~~T 60 (1805)
+.-|.|| |++-|+-.|
T Consensus 7 ~~tniPPKE~v~YsKqT 23 (28)
T 3glw_Z 7 QTQTTPPKETLVYTKQT 23 (28)
T ss_pred EECCCCCCCEEEEEEEE
T ss_conf 01247985106787344
No 10
>2ox7_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, NEW YORK structural genomics research consortiu nysgrc; 1.78A {Enterococcus faecalis} SCOP: b.172.1.1
Probab=1.00 E-value=1 Score=7.99 Aligned_cols=17 Identities=53% Similarity=0.831 Sum_probs=0.0
Q ss_pred CCCCHHHHCCCCCCCCC
Q ss_conf 66522210137678877
Q 000238 1090 GNIHEEEKSEGENNGHH 1106 (1805)
Q Consensus 1090 gniheeeksegennghh 1106 (1805)
|||||-..--...+|||
T Consensus 135 GNIyENpELLE~~~~~~ 151 (155)
T 2ox7_A 135 GNIHENPELLEGNEGHH 151 (155)
T ss_dssp EETTTSTTSCC------
T ss_pred EECCCCHHHHCCCCCCC
T ss_conf 55035988849876766
Done!