Query 000238
Match_columns 1805
No_of_seqs 4 out of 6
Neff 1.3
Searched_HMMs 13730
Date Tue Mar 26 16:10:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000238.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_18-22//hhsearch_scop/000238hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e0ca1 c.46.1.2 (A:1-135) Sul 3.9 95 0.0069 6.9 0.5 27 26-54 26-52 (135)
2 d1ci3m1 b.2.6.1 (M:1-169,M:232 3.4 87 0.0063 7.2 -0.6 34 1200-1244 151-184 (187)
3 d1tf5a3 c.37.1.19 (A:1-226,A:3 3.3 93 0.0067 7.0 -0.5 10 788-797 97-106 (273)
4 d1e2wa1 b.2.6.1 (A:1-168,A:233 3.1 98 0.0071 6.8 -0.6 34 1201-1245 151-184 (187)
5 d2cx1a2 d.17.6.4 (A:1-90) Hypo 2.5 1.6E+02 0.012 5.6 -0.0 24 1257-1280 48-71 (90)
6 d2cs4a1 d.15.1.5 (A:8-91) Ras 2.5 1.6E+02 0.012 5.6 -0.1 18 531-548 9-26 (84)
7 d2hfqa1 d.375.1.1 (A:1-85) Hyp 2.4 1.7E+02 0.012 5.5 0.1 19 695-713 52-70 (85)
8 d2j0wa1 c.73.1.3 (A:3-294) Asp 2.2 1.9E+02 0.014 5.1 0.6 20 316-335 210-229 (292)
9 d1vjea_ d.185.1.2 (A:) Autoind 2.2 33 0.0024 9.6 -4.0 36 551-586 39-74 (149)
10 d2cdqa1 c.73.1.3 (A:25-328) As 2.1 2E+02 0.015 5.0 1.0 20 316-335 220-239 (304)
No 1
>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=3.92 E-value=95 Score=6.91 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=11.3
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCCCCH
Q ss_conf 64456643010366420268667887301
Q 000238 26 GHFDSTADETFSRELKKFQGTLNVPPDTV 54 (1805)
Q Consensus 26 ~~~DaTADE~~~reLK~~~G~lN~PPet~ 54 (1805)
+-+|....+-|.+. ..+|++|.|...+
T Consensus 26 viiDvR~~~ey~~g--HIpgA~~~~~~~~ 52 (135)
T d1e0ca1 26 ILVDLTSAARYAEG--HIPGARFVDPKRT 52 (135)
T ss_dssp EEEECSCHHHHHHC--BSTTCEECCGGGG
T ss_pred EEEECCCHHHHHCC--CCCCCCCCCHHHH
T ss_conf 89979887888526--6752213661543
No 2
>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain {Phormidium laminosum [TaxId: 32059]}
Probab=3.44 E-value=87 Score=7.15 Aligned_cols=34 Identities=38% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 468878885210000138443035115899999888541022231
Q 000238 1200 DKGNEDRGPAMMAEEKSNENELLAVKDNSENKPSIGQEDSKHILQ 1244 (1805)
Q Consensus 1200 dkgnedrgpammaeeksnenellavkdnsenkpsigqedskhilq 1244 (1805)
--||..||-..-.-+|||- |--..||.|..-+||
T Consensus 151 vGgNRGRGQvYP~G~kSNN-----------NVGGFGQ~d~EiVLQ 184 (187)
T d1ci3m1 151 LGANRGRGQIYPTGEKSNN-----------NVGGFGQKDTEIVLQ 184 (187)
T ss_dssp EEEEESCCSBCTTSCBCSS-----------CCCEEEEEEEEEEEC
T ss_pred EECCCCCCCCCCCCCCCCC-----------CCCCCCCCCEEEEEC
T ss_conf 7055666536798754567-----------545557662389951
No 3
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=3.33 E-value=93 Score=6.99 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=3.2
Q ss_pred CCCCCCCCCC
Q ss_conf 2112468730
Q 000238 788 VAERSEGEND 797 (1805)
Q Consensus 788 ~aE~SkGe~d 797 (1805)
.|||.-|||-
T Consensus 97 iaem~TGEGK 106 (273)
T d1tf5a3 97 IAEMKTGEGK 106 (273)
T ss_dssp EEECCTTSCH
T ss_pred HEEECCCCCC
T ss_conf 3020688751
No 4
>d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.10 E-value=98 Score=6.84 Aligned_cols=34 Identities=35% Similarity=0.480 Sum_probs=21.9
Q ss_pred CCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 688788852100001384430351158999998885410222315
Q 000238 1201 KGNEDRGPAMMAEEKSNENELLAVKDNSENKPSIGQEDSKHILQE 1245 (1805)
Q Consensus 1201 kgnedrgpammaeeksnenellavkdnsenkpsigqedskhilqe 1245 (1805)
-||..||-..-.-+|||- |--..||.|..-+||.
T Consensus 151 GgNRGRGQvYP~G~kSNN-----------NVGGFGQ~e~EiVLQ~ 184 (187)
T d1e2wa1 151 GGNRGRGQVYPDGKKSNF-----------NVGGFGQAETEIVLQN 184 (187)
T ss_dssp EEEESCCSBCTTSCBCSS-----------CCCEEEEEEEEEEECC
T ss_pred ECCCCCCCCCCCCCCCCC-----------CCCCCCCCCEEEEECC
T ss_conf 055666636798754667-----------6455465521688317
No 5
>d2cx1a2 d.17.6.4 (A:1-90) Hypothetical protein APE0525, N-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=2.51 E-value=1.6e+02 Score=5.59 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 000367743333578996201013
Q 000238 1257 SVRSDENEESVVDADKSPCLMEIG 1280 (1805)
Q Consensus 1257 svrsdeneesvvdadkspclmeig 1280 (1805)
..|.|..+-.++..|.-|||.+..
T Consensus 48 kartdsgeyeiitvdgvpclfews 71 (90)
T d2cx1a2 48 KARTDSGEYEIITVDGVPCLFEWS 71 (90)
T ss_dssp EEECSSCEEEEEEETTEEEEEECT
T ss_pred EEECCCCCEEEEEECCCCEEEEEC
T ss_conf 760578836899965841788814
No 6
>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing protein 8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.49 E-value=1.6e+02 Score=5.58 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=8.9
Q ss_pred HHHHCCCCCCCCCCHHHH
Q ss_conf 863013222111211453
Q 000238 531 REIKNVSEVDEKTECAEV 548 (1805)
Q Consensus 531 Re~K~~sEv~~KTE~AEV 548 (1805)
.+.+-|+-|..+|-|++|
T Consensus 9 ge~r~V~GVt~~TTC~DV 26 (84)
T d2cs4a1 9 GVQRIVCGVTEVTTCQEV 26 (84)
T ss_dssp TEEECCSSBCSSSCHHHH
T ss_pred CEEEEEECCCCCCCHHHH
T ss_conf 907788688999728999
No 7
>d2hfqa1 d.375.1.1 (A:1-85) Hypothetical protein NE1680 {Nitrosomonas europaea [TaxId: 915]}
Probab=2.44 E-value=1.7e+02 Score=5.45 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=12.8
Q ss_pred CCCCEECCHHHHHHHHHCC
Q ss_conf 1352021238875533103
Q 000238 695 VNNAVFVRDEKAKENIQAE 713 (1805)
Q Consensus 695 v~naefv~deKa~enIQAa 713 (1805)
...--|||-+.|..+|+.+
T Consensus 52 ~~~C~FCHsE~A~~~V~~~ 70 (85)
T d2hfqa1 52 SEECRFCHSEKAPDEVIEA 70 (85)
T ss_dssp TTTBCCCEEEECCHHHHHH
T ss_pred HHHCCCCCCCCCCHHHHHH
T ss_conf 2105254676599899999
No 8
>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=2.19 E-value=1.9e+02 Score=5.14 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCCCCCCCCH
Q ss_conf 36786333456788777890
Q 000238 316 LDTQSVTPATDVSGVYEAEP 335 (1805)
Q Consensus 316 LD~~SVT~a~D~S~~~E~~~ 335 (1805)
|+...|+.-|||.|+|-+.|
T Consensus 210 l~A~~v~iwtDV~Gi~taDP 229 (292)
T d2j0wa1 210 LHASRVDIWTDVPGIYTTDP 229 (292)
T ss_dssp TTCSEEEEEESSSSEESSCT
T ss_pred HHCHHHHHHCCCCCEEECHH
T ss_conf 50589998616752343632
No 9
>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]}
Probab=2.16 E-value=33 Score=9.58 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 457955467844541000133563124755039864
Q 000238 551 QNKNASDLHDIPVLDEEAGETEGKDLEEVIKTEPKG 586 (1805)
Q Consensus 551 ~NKN~~~L~~I~vLdeEa~~~EGk~LeeV~~~~Pk~ 586 (1805)
||+..-+--++|-|+.-...---..++.||+|+|-|
T Consensus 39 PN~~~m~~~~~HTlEHL~A~~lRn~~~~iId~sPMG 74 (149)
T d1vjea_ 39 PNQGAIDPAAIHTLEHLLAGYMRDHLEGVVDVSPMG 74 (149)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHHHHHCTTEEEEEECT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 984558874124999988988873778848887876
No 10
>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=2.11 E-value=2e+02 Score=5.02 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCH
Q ss_conf 36786333456788777890
Q 000238 316 LDTQSVTPATDVSGVYEAEP 335 (1805)
Q Consensus 316 LD~~SVT~a~D~S~~~E~~~ 335 (1805)
|+...|+.-|||.|+|-+.|
T Consensus 220 l~A~~~~iwtDV~Gi~taDP 239 (304)
T d2cdqa1 220 LGLKEIQVWKDVDGVLTCDP 239 (304)
T ss_dssp HTCSEEEEEESSSSSBSSCT
T ss_pred HCCHHHHHHCCCCHHEECCC
T ss_conf 57569988537604214520
Done!