BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000239
         (1804 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OYX|A Chain A, Haloferax Volcanii Malate Synthase MagnesiumGLYOXYLATE
            COMPLEX
 pdb|3OYZ|A Chain A, Haloferax Volcanii Malate Synthase PyruvateACETYL-Coa
            Ternary Complex
 pdb|3PUG|A Chain A, Haloferax Volcanii Malate Synthase Native At 3mm Glyoxylate
          Length = 433

 Score = 32.3 bits (72), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 1024 EAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANV-AVLTEQNNVLQ 1082
            E +  G A  L  +++REE +  TS +      + S+E+  +  EA   A+   Q+  L+
Sbjct: 314  ELRVGGDARELTADELREELLGLTSYVPSMDDIVDSMEEFEAAKEAGRGAIAMTQSATLR 373

Query: 1083 VGKTTLENELQMLKDEAGSQA 1103
            +G T ++ E   + DEA  QA
Sbjct: 374  IGGTEIDIEKDRMWDEATYQA 394


>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound
            To Novel Bosutinib Isoform 1, Previously Thought To Be
            Bosutinib
          Length = 293

 Score = 32.0 bits (71), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 22/38 (57%)

Query: 1121 LKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGT 1158
            LKA N +  LEG+ R++D  VSA N K    RD   GT
Sbjct: 135  LKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGT 172


>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound
            To Su11274
 pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 (Lok)
            Bound To Gw830263a
 pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10 (Lok)
            Bound To Gw830263a
 pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
            With Inhibitor Dsa-7
 pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
            With Inhibitor Dsa-7
          Length = 302

 Score = 32.0 bits (71), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 22/38 (57%)

Query: 1121 LKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGT 1158
            LKA N +  LEG+ R++D  VSA N K    RD   GT
Sbjct: 143  LKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGT 180


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.126    0.327 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,188,605
Number of Sequences: 62578
Number of extensions: 1622159
Number of successful extensions: 4980
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 4747
Number of HSP's gapped (non-prelim): 285
length of query: 1804
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1691
effective length of database: 7,902,023
effective search space: 13362320893
effective search space used: 13362320893
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)